BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780620|ref|YP_003065033.1| iron-responsive
transcriptional regulator [Candidatus Liberibacter asiaticus str.
psy62]
         (144 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040297|gb|ACT57093.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score =  296 bits (758), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR
Sbjct: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD
Sbjct: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VLTQYSIECLVRNRSSIKKIFNAG
Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144


>gi|315121821|ref|YP_004062310.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495223|gb|ADR51822.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 144

 Score =  242 bits (618), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 128/143 (89%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLTKRTDYGIRVLMYCA++ D PNRI+QIAEACCISE FLFKILQPL KAGI+ETVRGR
Sbjct: 1   MHLTKRTDYGIRVLMYCALNQDCPNRIAQIAEACCISEFFLFKILQPLGKAGIIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRLCRPADQIT+LDVVKATEESF++AECF  HKI CPLVG+C L+SV +KALNAFFD
Sbjct: 61  NGGVRLCRPADQITVLDVVKATEESFYMAECFGKHKISCPLVGNCNLSSVFQKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL +YSIECLV++RS  KK+  A
Sbjct: 121 VLKRYSIECLVQDRSLYKKLLKA 143


>gi|222084938|ref|YP_002543467.1| rhizobial iron transcriptional regulator protein [Agrobacterium
           radiobacter K84]
 gi|221722386|gb|ACM25542.1| rhizobial iron transcriptional regulator protein [Agrobacterium
           radiobacter K84]
          Length = 162

 Score =  184 bits (467), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 108/138 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +  Y +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGYLSRIPEIAKAYGVSELFLFKILQPLTKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +P   I++ DVV+ TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPPTDISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VLT+YSI+ LV+ R  I 
Sbjct: 121 VLTEYSIDDLVKARPQIN 138


>gi|15964483|ref|NP_384836.1| iron-responsive transcriptional regulator [Sinorhizobium meliloti
           1021]
 gi|307308426|ref|ZP_07588130.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307318989|ref|ZP_07598420.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|8469098|sp|Q9R9M8|AAU3_RHIME RecName: Full=Protein aau3
 gi|15073660|emb|CAC45302.1| Transcriptional regulator of the iron limitation response
           [Sinorhizobium meliloti 1021]
 gi|306895403|gb|EFN26158.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306901029|gb|EFN31637.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 154

 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 109/138 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL  Y+I+ LV+ R  I 
Sbjct: 121 VLQGYTIDDLVKARPQIN 138


>gi|227820925|ref|YP_002824895.1| iron-responsive transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227339924|gb|ACP24142.1| putative transcriptional regulator, Rrf2 family [Sinorhizobium
           fredii NGR234]
          Length = 154

 Score =  183 bits (464), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 110/137 (80%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA+A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAKAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA +I++ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFFD
Sbjct: 61  NGGVRLPKPASEISLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL  Y+I+ LV+ R  I
Sbjct: 121 VLKGYTIDDLVKARPQI 137


>gi|325291641|ref|YP_004277505.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059494|gb|ADY63185.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 156

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/137 (63%), Positives = 108/137 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA++I++ DVVK TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL +YSI+ LV+ R  I
Sbjct: 121 VLAEYSIDDLVKARPQI 137


>gi|6224919|gb|AAF06014.1|AF193764_1 Aau3 protein [Sinorhizobium meliloti]
          Length = 154

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 109/138 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAGAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL  Y+I+ LV+ R  I 
Sbjct: 121 VLQGYTIDDLVKARPQIN 138


>gi|150395554|ref|YP_001326021.1| iron-responsive transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027069|gb|ABR59186.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 154

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 108/138 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL  Y+I+ LV+ R  I 
Sbjct: 121 VLQGYTIDDLVKARPQIN 138


>gi|15887554|ref|NP_353235.1| iron-responsive transcriptional regulator [Agrobacterium
           tumefaciens str. C58]
 gi|15155087|gb|AAK86020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 156

 Score =  181 bits (459), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 108/137 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA++I++ DVV+ TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL +YSI+ LV+ R  I
Sbjct: 121 VLAEYSIDDLVKARPQI 137


>gi|222147641|ref|YP_002548598.1| iron-responsive transcriptional regulator [Agrobacterium vitis S4]
 gi|221734629|gb|ACM35592.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 156

 Score =  177 bits (449), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + D+ +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRILMYCAANKDHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  ++I++ DVVK TE+SF +AECF    ++DCPL+ SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGRAPEKISLFDVVKVTEDSFAMAECFEDDGEVDCPLIDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL +YSI+ LV+ R  I 
Sbjct: 121 AVLAEYSIDDLVKARPQIN 139


>gi|163758625|ref|ZP_02165712.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
 gi|162283915|gb|EDQ34199.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
          Length = 149

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 107/138 (77%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI  IA+A  +SELFLFKILQPL KAG+VE+VRGR
Sbjct: 1   MRLTRQTNYAVRMLMYCAANDGNLSRIGDIAKAYSVSELFLFKILQPLTKAGLVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R AD+IT+LDVV  TE+SF +AECF +   +CPLV SCGL + LRKAL AFF+
Sbjct: 61  NGGIRLGRAADKITLLDVVSVTEDSFAMAECFENDATECPLVDSCGLNTALRKALGAFFE 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL  YSI+ LV+ R SI 
Sbjct: 121 VLATYSIDDLVKARPSIN 138


>gi|241203174|ref|YP_002974270.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857064|gb|ACS54731.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 160

 Score =  176 bits (447), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    ++DCPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVDCPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++YSI+ LV+ R  I 
Sbjct: 121 AVLSEYSIDDLVKARPQIN 139


>gi|13516334|emb|CAC35510.1| rhizobial iron regulator [Rhizobium leguminosarum bv. viciae]
          Length = 160

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    +++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++YSI+ LV+ R  I 
Sbjct: 121 AVLSEYSIDDLVKARPQIN 139


>gi|209547997|ref|YP_002279914.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533753|gb|ACI53688.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 160

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 108/139 (77%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++YSI+ LV+ R  I 
Sbjct: 121 AVLSEYSIDDLVKARPQIN 139


>gi|116250549|ref|YP_766387.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255197|emb|CAK06271.1| Rhizobium iron regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 160

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    +++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++YSI+ LV+ R  I 
Sbjct: 121 AVLSEYSIDDLVKARPQIN 139


>gi|327190570|gb|EGE57662.1| iron-responsive transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 160

 Score =  174 bits (441), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL RPA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGRPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++Y+I+ LV+ R  I 
Sbjct: 121 AVLSEYTIDDLVKARPQIN 139


>gi|86356384|ref|YP_468276.1| iron-responsive transcriptional regulator [Rhizobium etli CFN 42]
 gi|190890437|ref|YP_001976979.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CIAT 652]
 gi|86280486|gb|ABC89549.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|190695716|gb|ACE89801.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CIAT 652]
          Length = 160

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL++Y+I+ LV+ R  I 
Sbjct: 121 AVLSEYTIDDLVKARPQIN 139


>gi|13471232|ref|NP_102801.1| iron-responsive transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|14021976|dbj|BAB48587.1| Aau3 protein [Mesorhizobium loti MAFF303099]
          Length = 153

 Score =  173 bits (438), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 107/141 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA +ND  +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y+I  +V  R +++ + 
Sbjct: 121 VLARYTIADMVAARPNVRNLL 141


>gi|218663399|ref|ZP_03519329.1| iron-responsive transcriptional regulator [Rhizobium etli IE4771]
          Length = 160

 Score =  173 bits (438), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 107/139 (76%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++   +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            VL+ Y+I+ LV+ R  I 
Sbjct: 121 AVLSDYTIDDLVKARPQIN 139


>gi|260459730|ref|ZP_05807984.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034532|gb|EEW35789.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 153

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 107/141 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA +ND  +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANNDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y+I  +V  R +++ + 
Sbjct: 121 VLERYTIADMVAARPNVRSLL 141


>gi|319783139|ref|YP_004142615.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169027|gb|ADV12565.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 154

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 107/141 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++D  +RI +IA A  +SELFLFKILQPLV+ G+V+TVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANDDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVKLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y+I  LV  R +++ + 
Sbjct: 121 VLARYTIADLVAARPNVRNLL 141


>gi|239833919|ref|ZP_04682247.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239821982|gb|EEQ93551.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 211

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 106/141 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 59  MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 118

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I++ DVV+ TEE+F +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 119 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 178

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +YSI  LV+ R +++ + 
Sbjct: 179 VLMKYSIADLVKARPNVRHLL 199


>gi|153010938|ref|YP_001372152.1| iron-responsive transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151562826|gb|ABS16323.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 153

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 106/141 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I++ DVV+ TEE+F +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +YSI  LV+ R +++ + 
Sbjct: 121 VLMKYSIADLVKARPNVRHLL 141


>gi|23500306|ref|NP_699746.1| iron-responsive transcriptional regulator [Brucella suis 1330]
 gi|161620624|ref|YP_001594510.1| iron-responsive transcriptional regulator [Brucella canis ATCC
           23365]
 gi|254702937|ref|ZP_05164765.1| iron-responsive transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260568151|ref|ZP_05838620.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261753543|ref|ZP_05997252.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|23463917|gb|AAN33751.1| RrF2 family protein [Brucella suis 1330]
 gi|161337435|gb|ABX63739.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|260154816|gb|EEW89897.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261743296|gb|EEY31222.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 153

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLVK G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVKHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|225629057|ref|ZP_03787090.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
 gi|225615553|gb|EEH12602.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
          Length = 180

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28  MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 88  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 148 VLMKYSIADLVKARPNVR 165


>gi|237817129|ref|ZP_04596121.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|237787942|gb|EEP62158.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
          Length = 180

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28  MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 88  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 148 VLMKYSIADLVKARPNVR 165


>gi|17989052|ref|NP_541685.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           1 str. 16M]
 gi|148557978|ref|YP_001257553.1| iron-responsive transcriptional regulator [Brucella ovis ATCC
           25840]
 gi|225686349|ref|YP_002734321.1| iron-responsive transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|254699801|ref|ZP_05161629.1| iron-responsive transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254705944|ref|ZP_05167772.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711169|ref|ZP_05172980.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254720448|ref|ZP_05182259.1| iron-responsive transcriptional regulator [Brucella sp. 83/13]
 gi|256029550|ref|ZP_05443164.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256043455|ref|ZP_05446384.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256059242|ref|ZP_05449448.1| iron-responsive transcriptional regulator [Brucella neotomae 5K33]
 gi|256111523|ref|ZP_05452537.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           3 str. Ether]
 gi|256157745|ref|ZP_05455663.1| iron-responsive transcriptional regulator [Brucella ceti M490/95/1]
 gi|256253285|ref|ZP_05458821.1| iron-responsive transcriptional regulator [Brucella ceti B1/94]
 gi|256262513|ref|ZP_05465045.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260167360|ref|ZP_05754171.1| iron-responsive transcriptional regulator [Brucella sp. F5/99]
 gi|260564653|ref|ZP_05835138.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|261220398|ref|ZP_05934679.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313373|ref|ZP_05952570.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318761|ref|ZP_05957958.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261323195|ref|ZP_05962392.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261750271|ref|ZP_05993980.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261756768|ref|ZP_06000477.1| RrF2 family protein [Brucella sp. F5/99]
 gi|265985470|ref|ZP_06098205.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265986559|ref|ZP_06099116.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989875|ref|ZP_06102432.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993019|ref|ZP_06105576.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|265996251|ref|ZP_06108808.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|294853640|ref|ZP_06794312.1| rirA [Brucella sp. NVSL 07-0026]
 gi|306839690|ref|ZP_07472493.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|306841790|ref|ZP_07474476.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306845894|ref|ZP_07478462.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|17984895|gb|AAL53949.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|148369263|gb|ABQ62135.1| RrF2 family protein [Brucella ovis ATCC 25840]
 gi|225642454|gb|ACO02367.1| Transcriptional regulator, Rrf2 family protein [Brucella melitensis
           ATCC 23457]
 gi|260152296|gb|EEW87389.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260918982|gb|EEX85635.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297984|gb|EEY01481.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299175|gb|EEY02672.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302399|gb|EEY05896.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261736752|gb|EEY24748.1| RrF2 family protein [Brucella sp. F5/99]
 gi|261740024|gb|EEY27950.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262550548|gb|EEZ06709.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|262763889|gb|EEZ09921.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263000544|gb|EEZ13234.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092248|gb|EEZ16545.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264658756|gb|EEZ29017.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264664062|gb|EEZ34323.1| transcriptional regulator [Brucella sp. 83/13]
 gi|294819295|gb|EFG36295.1| rirA [Brucella sp. NVSL 07-0026]
 gi|306273786|gb|EFM55624.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|306288195|gb|EFM59582.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306405270|gb|EFM61546.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|326410717|gb|ADZ67781.1| iron-responsive transcriptional regulator [Brucella melitensis M28]
 gi|326554010|gb|ADZ88649.1| iron-responsive transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 153

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|62317580|ref|YP_223433.1| iron-responsive transcriptional regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|83269562|ref|YP_418853.1| iron-responsive transcriptional regulator [Brucella melitensis
           biovar Abortus 2308]
 gi|189022834|ref|YP_001932575.1| iron-responsive transcriptional regulator [Brucella abortus S19]
 gi|254691079|ref|ZP_05154333.1| iron-responsive transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254695615|ref|ZP_05157443.1| iron-responsive transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|254698864|ref|ZP_05160692.1| iron-responsive transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732311|ref|ZP_05190889.1| iron-responsive transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256256264|ref|ZP_05461800.1| iron-responsive transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260544818|ref|ZP_05820639.1| RrF2 family protein [Brucella abortus NCTC 8038]
 gi|260756675|ref|ZP_05869023.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260760106|ref|ZP_05872454.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260763344|ref|ZP_05875676.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882492|ref|ZP_05894106.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261216014|ref|ZP_05930295.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297249620|ref|ZP_06933321.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
           bv. 5 str. B3196]
 gi|62197773|gb|AAX76072.1| RrF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939836|emb|CAJ12844.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
           Abortus 2308]
 gi|189021408|gb|ACD74129.1| RrF2 family protein [Brucella abortus S19]
 gi|260098089|gb|EEW81963.1| RrF2 family protein [Brucella abortus NCTC 8038]
 gi|260670424|gb|EEX57364.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673765|gb|EEX60586.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676783|gb|EEX63604.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872020|gb|EEX79089.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917621|gb|EEX84482.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297173489|gb|EFH32853.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
           bv. 5 str. B3196]
          Length = 153

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|163844714|ref|YP_001622369.1| iron-responsive transcriptional regulator [Brucella suis ATCC
           23445]
 gi|163675437|gb|ABY39547.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
           23445]
          Length = 153

 Score =  166 bits (420), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|254712372|ref|ZP_05174183.1| iron-responsive transcriptional regulator [Brucella ceti M644/93/1]
 gi|254715444|ref|ZP_05177255.1| iron-responsive transcriptional regulator [Brucella ceti M13/05/1]
 gi|261217178|ref|ZP_05931459.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320049|ref|ZP_05959246.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260922267|gb|EEX88835.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292739|gb|EEX96235.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 153

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYTIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|256015338|ref|YP_003105347.1| RrF2 family protein [Brucella microti CCM 4915]
 gi|255997998|gb|ACU49685.1| RrF2 family protein [Brucella microti CCM 4915]
          Length = 153

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 105/138 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F + ECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMTECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +YSI  LV+ R +++
Sbjct: 121 VLMKYSIADLVKARPNVR 138


>gi|110633798|ref|YP_674006.1| iron-responsive transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284782|gb|ABG62841.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 153

 Score =  165 bits (417), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA +    +RI  IA+A  +S+LFLFKILQPLV+AG V+TVRGR
Sbjct: 1   MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA+ IT+ DV++ TEESF +AECF  +  +CPLV  CGL   LRKAL AFF+
Sbjct: 61  NGGVKLGKPAEDITLFDVIRVTEESFAMAECF-ENDTECPLVDGCGLNEALRKALGAFFE 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL  Y+I+ LV  R +++ + 
Sbjct: 120 VLASYTIQDLVDARPNMRDVL 140


>gi|90419071|ref|ZP_01226982.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337151|gb|EAS50856.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 160

 Score =  164 bits (414), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 103/139 (74%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA +    +RI  IA A   SELFLFKILQPLV+AG+VETVRGR
Sbjct: 7   MRLTRQTNYAIRILMYCASNGGQLSRIKDIAAAYSASELFLFKILQPLVEAGMVETVRGR 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA  I + +VV+ TEE+F +AECF +  +DCPL+ SC L S LR+ALNAF  
Sbjct: 67  NGGVRLARPAAAINLRNVVEVTEENFALAECFETGAVDCPLIESCELNSALREALNAFLG 126

Query: 121 VLTQYSIECLVRNRSSIKK 139
            L  Y+I+ L+ N++ +++
Sbjct: 127 ALGNYTIDDLLGNKAFMRR 145


>gi|49475376|ref|YP_033417.1| iron-responsive transcriptional regulator [Bartonella henselae str.
           Houston-1]
 gi|49238182|emb|CAF27391.1| hypothetical protein BH05830 [Bartonella henselae str. Houston-1]
          Length = 155

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 103/132 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA+A  +SELFLFKILQPLV+AG V+TVRGR
Sbjct: 1   MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DVVK TE++F +AECF + K +CPL+  C L + L+KALNAFFD
Sbjct: 61  NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD 120

Query: 121 VLTQYSIECLVR 132
           VL+  S+  L R
Sbjct: 121 VLSVISLADLQR 132


>gi|49474135|ref|YP_032177.1| iron-responsive transcriptional regulator [Bartonella quintana str.
           Toulouse]
 gi|49239639|emb|CAF25998.1| aau3 protein [Bartonella quintana str. Toulouse]
          Length = 148

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 101/132 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI  IA+A  ISE FLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVEAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +PA +I++ DVVK TE++F +AECF + K +CPL+  CGL + L+KALNAFFD
Sbjct: 61  NGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCPLIDFCGLNTALQKALNAFFD 120

Query: 121 VLTQYSIECLVR 132
           VL+  S+  L R
Sbjct: 121 VLSMISLADLQR 132


>gi|319898771|ref|YP_004158864.1| hypothetical protein BARCL_0601 [Bartonella clarridgeiae 73]
 gi|319402735|emb|CBI76282.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 159

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 102/130 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 9   MRLTKQTNYALRMLMYCASNQGALSRIPEIAKAHAVSELFLFKILQPLVEAGFMQTVRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   DCPL+  CGL +VL+KAL++FFD
Sbjct: 69  NGGVKLAKPAKEISVADVIKITEDNFSMAECFDNKLSDCPLINFCGLNTVLKKALDSFFD 128

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 129 VLSMTSIADL 138


>gi|319408357|emb|CBI82010.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 137

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 99/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + D  + I +IA+   ISELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKKTNYALRILMYCASNQDSLSSIPEIAKTYAISELFLFKILQPLVEAGFLQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +PA +I++ DVVK  E++F +AECF   +++CPLV SC L  VL+ ALNAFFD
Sbjct: 61  NGGIKLAKPATEISVADVVKIIEDNFSMAECFDKTEVNCPLVNSCNLNIVLKNALNAFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSTTSISDL 130


>gi|319407107|emb|CBI80744.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 151

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 100/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA    +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQEALSRIPEIASTYAVSELFLFKILQPLVEAGFIKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|319405537|emb|CBI79156.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 151

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 101/130 (77%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQGALSRIPEIARAYAVSELFLFKILQPLVEAGFMKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F++AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFYMAECFDNKLSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|319404095|emb|CBI77683.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 151

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 100/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA    +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQEALSRIPEIANTYAVSELFLFKILQPLVEAGFMKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|163868066|ref|YP_001609270.1| iron-responsive transcriptional regulator [Bartonella tribocorum
           CIP 105476]
 gi|161017717|emb|CAK01275.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 144

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +R+S+IA+A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGSLSRVSEIAKAYAVSELFLFKILQPLVQAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF + +  CPL+  C L   L+KAL+AFFD
Sbjct: 61  NGGVKLAKPATEISVADVLKVTEDNFSLAECFDNAEPTCPLIDFCSLNIALQKALSAFFD 120

Query: 121 VLTQYSIECLVR 132
           VL+  S+  L R
Sbjct: 121 VLSVISLADLQR 132


>gi|240850269|ref|YP_002971662.1| iron-responsive transcriptional regulator [Bartonella grahamii
           as4aup]
 gi|240267392|gb|ACS50980.1| iron-responsive transcriptional regulator [Bartonella grahamii
           as4aup]
          Length = 147

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 99/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +R+ +IA+A  +SELFLFKILQ LV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGTLSRVPEIAKAYAVSELFLFKILQLLVQAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA +I++ DVVK TE++F +AECF + +  CPL+  C L + L+KALNAFF+
Sbjct: 61  NGGVRLAKPAAEISVADVVKVTEDNFSLAECFDTAEPTCPLIDFCSLNTALQKALNAFFE 120

Query: 121 VLTQYSIECL 130
           VL+  S+  L
Sbjct: 121 VLSVISLADL 130


>gi|114705699|ref|ZP_01438602.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
 gi|114538545|gb|EAU41666.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
          Length = 149

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 99/141 (70%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMY A++ D  +R+ +IA+A    E F+FKIL PLV AG+VETVRGR
Sbjct: 1   MRLTRQTNYAIRILMYLAVNKDRLSRLGEIAKAYSAPEPFMFKILNPLVSAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A +I + +VV+ TEESF +AECF +   DCPL+ SC L + LR+AL AF  
Sbjct: 61  NGGIRLAREATRINLREVVELTEESFQMAECFETGA-DCPLIFSCELNAALRQALEAFLS 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L +YS+E L +N+  + +  
Sbjct: 120 TLGRYSLEDLTKNKGYLHRTL 140


>gi|118589790|ref|ZP_01547195.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
 gi|118437876|gb|EAV44512.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
          Length = 154

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 100/141 (70%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R LMYCA++ D P++++ IA +  +SE  LFKI++ LV A +++T+RGR
Sbjct: 1   MRLTQQTNYAVRALMYCAVNPDKPSKVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPA++I++ +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +
Sbjct: 61  NGGVMLARPAEKISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   SI  L  +R  ++ + 
Sbjct: 121 VLDGKSIADLSEDRFGMRDLL 141


>gi|307947490|ref|ZP_07662823.1| protein Aau3 [Roseibium sp. TrichSKD4]
 gi|307769308|gb|EFO28536.1| protein Aau3 [Roseibium sp. TrichSKD4]
          Length = 153

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 100/141 (70%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R LMYCA++ D P+R++ IA +  +SE  LFKI++ LV A +++T+RGR
Sbjct: 1   MRLTQQTNYAVRALMYCAVNPDKPSRVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L +PA+ I++ +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +
Sbjct: 61  NGGVMLAKPAETISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   SI  L  +R  ++++ 
Sbjct: 121 VLDTKSIADLSEDRFGMRELL 141


>gi|254473748|ref|ZP_05087143.1| protein Aau3 [Pseudovibrio sp. JE062]
 gi|211957134|gb|EEA92339.1| protein Aau3 [Pseudovibrio sp. JE062]
          Length = 142

 Score =  134 bits (338), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 91/128 (71%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA + D P+++++IA +  +SE  LFKI++ LV A +++T+RGR GG+ L RPA+QI+
Sbjct: 1   MYCAANPDKPSKVAEIAASFSMSETHLFKIMKVLVDADLMKTIRGRNGGIVLPRPAEQIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +  VV+ATEESF +AECF S + DCPLV  CG  SVL +AL AF  VL + +I  L  NR
Sbjct: 61  VGQVVRATEESFLLAECFDSGRQDCPLVNHCGFNSVLHEALEAFLGVLDKCTIADLADNR 120

Query: 135 SSIKKIFN 142
           +SI+ +  
Sbjct: 121 ASIRHLLQ 128


>gi|328545191|ref|YP_004305300.1| transcriptional regulator superfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414933|gb|ADZ71996.1| Transcriptional regulator superfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 137

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 91/128 (71%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA + + P++++ IA +  +SE  LFKI++ LV  G+++T+RGR GG+ L RPA++IT
Sbjct: 1   MYCAANPERPSKVADIAASFAMSETHLFKIMKVLVDGGLIKTIRGRNGGIVLARPANKIT 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I +VV+  EESF++AECF S + DCP++ +CG   VL +AL AF DVL   +IE +  NR
Sbjct: 61  IGEVVRVAEESFYLAECFNSGRKDCPILTTCGFNGVLHEALEAFMDVLDSKTIEDIAENR 120

Query: 135 SSIKKIFN 142
             ++K+ +
Sbjct: 121 KDLRKLLH 128


>gi|163761538|ref|ZP_02168610.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
           DFL-43]
 gi|162281252|gb|EDQ31551.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
           DFL-43]
          Length = 155

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +T+Y +R+LM+C    D   ++ +IA    + E FLF ILQ L   G++ET RGR
Sbjct: 1   MKLTSQTNYAVRMLMFCHSKGDRA-KVKEIAAFYGLPERFLFNILQRLTAVGLMETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+QI + DVV+  EE+F +AECF +   DCPL+ +CGL   L +AL +FFD
Sbjct: 60  GGGIRLARPAEQIMLGDVVRLVEENFEMAECFEAGGTDCPLINTCGLNKALSEALRSFFD 119

Query: 121 VLTQYSIECLVRNRSSI 137
            L +YSI  L  +  +I
Sbjct: 120 SLNRYSIADLTGSEFNI 136


>gi|218514457|ref|ZP_03511297.1| iron-responsive transcriptional regulator [Rhizobium etli 8C-3]
          Length = 146

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 89/127 (70%), Gaps = 9/127 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSC--------GLTSVL 111
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV S         G   +L
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSLRPEFGAAQGAQCLL 120

Query: 112 RKALNAF 118
           R+A+  +
Sbjct: 121 RRAVGIY 127


>gi|254503973|ref|ZP_05116124.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
 gi|222440044|gb|EEE46723.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
          Length = 140

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 88/128 (68%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA++ D P+R++ IA +  +SE  LFKI++ LV A ++ T+RGR GGV L RPA+ I+
Sbjct: 1   MYCAVNPDKPSRVADIAASFEMSETHLFKIMKVLVDANLIRTIRGRNGGVMLARPAEAIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +VL   SI  L  +R
Sbjct: 61  VGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFMEVLDAKSIADLSEDR 120

Query: 135 SSIKKIFN 142
             ++ + N
Sbjct: 121 FGMRTLLN 128


>gi|304393239|ref|ZP_07375167.1| protein Aau3 [Ahrensia sp. R2A130]
 gi|303294246|gb|EFL88618.1| protein Aau3 [Ahrensia sp. R2A130]
          Length = 158

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 90/138 (65%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK+T+Y +R+LMYCA H +   R+S +A    +S+ F+ K+LQ   KAG V+T+RGR
Sbjct: 1   MQITKQTNYALRMLMYCAAH-EGSVRLSDVATFYGLSQSFMHKVLQTTSKAGFVKTMRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP ++IT+ +VV+A E+ F +AECF      CPL  SCGL     +AL+AF  
Sbjct: 60  SGGLMLARPPEEITVGEVVRAVEDRFEMAECF-REDTTCPLEQSCGLNGAFHEALDAFLT 118

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +++I  +   R++I 
Sbjct: 119 VLDKHTIADITNERANIN 136


>gi|218462293|ref|ZP_03502384.1| iron-responsive transcriptional regulator [Rhizobium etli Kim 5]
          Length = 89

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LTK+T+Y +R+LMYCA ++   +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1  MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLSKAGLVETVRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GGVRL +PA  IT+ DVV+ TE+SF +A
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMA 89


>gi|300689754|ref|YP_003750749.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           PSI07]
 gi|299076814|emb|CBJ49424.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           PSI07]
          Length = 172

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 86/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGIALGRPAAEINIGDVVRATEPDFSLVECFHGDDNHCVITRVCGLRGVLTAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDAYTLQDLIDRPAALNRVLAEG 144


>gi|299065123|emb|CBJ36287.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           CMR15]
          Length = 192

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 87/144 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 21  MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 80

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF  +   C +   CGL  VL  AL A+F+
Sbjct: 81  AGGITLGRPAAEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 140

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 141 VLDTYTLQDLIERPAALNRVLAEG 164


>gi|17548114|ref|NP_521516.1| hypothetical protein RSc3397 [Ralstonia solanacearum GMI1000]
 gi|17430421|emb|CAD16894.1| putative of unknown function upf0074; transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 172

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 87/144 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF  +   C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIERPAALNRVLAEG 144


>gi|300702436|ref|YP_003744036.1| hth-type transcriptional regulator nsrr [Ralstonia solanacearum
           CFBP2957]
 gi|299070097|emb|CBJ41384.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           CFBP2957]
          Length = 170

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAADINIGDVVRATEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144


>gi|207722055|ref|YP_002252493.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|207741831|ref|YP_002258223.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
 gi|206587229|emb|CAQ17813.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|206593215|emb|CAQ60142.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
          Length = 172

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV++TE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144


>gi|83746141|ref|ZP_00943195.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
 gi|83727107|gb|EAP74231.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
          Length = 189

 Score =  117 bits (292), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 18  MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV++TE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 78  AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 137

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 138 VLDTYTLQDLIDKPAALNRVLAEG 161


>gi|89096423|ref|ZP_01169316.1| YhdE [Bacillus sp. NRRL B-14911]
 gi|89089277|gb|EAR68385.1| YhdE [Bacillus sp. NRRL B-14911]
          Length = 158

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY IRVL+Y A H ND    I +IAEA  IS+  L KI+  L K G + TVRG
Sbjct: 1   MRLTTYSDYSIRVLIYLASHQNDKLVNIKEIAEAYDISKNHLMKIIYNLGKMGYIRTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG +L +   +I I ++V+ TEE F++ ECF  HK  C +   C L  +L  AL +F 
Sbjct: 61  RNGGFKLAKLPAEINIGEIVRKTEEDFYLVECF-DHKNKCVITPVCSLKHILNHALESFL 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++E +V N++ +K+ F
Sbjct: 120 KVLDQYTLEDIVENKAMLKEYF 141


>gi|52079417|ref|YP_078208.1| hypothetical protein BL02858 [Bacillus licheniformis ATCC 14580]
 gi|52784777|ref|YP_090606.1| YhdE [Bacillus licheniformis ATCC 14580]
 gi|319646802|ref|ZP_08001031.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
 gi|81386129|sp|Q65M01|NSRR_BACLD RecName: Full=HTH-type transcriptional regulator nsrR
 gi|52002628|gb|AAU22570.1| conserved hypothetical protein YhdE [Bacillus licheniformis ATCC
           14580]
 gi|52347279|gb|AAU39913.1| YhdE [Bacillus licheniformis ATCC 14580]
 gi|317391390|gb|EFV72188.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
          Length = 143

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  N      I  IA++  IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +V++ TE+ F + ECF   K  C L   CGL  VL KAL+A+ 
Sbjct: 61  RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           DVL QY+++ ++ N+  I+K+ 
Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLL 142


>gi|295702551|ref|YP_003595626.1| nitric oxide sensitive transcriptional regulator [Bacillus
           megaterium DSM 319]
 gi|294800210|gb|ADF37276.1| transcriptional regulator, nitric oxide sensitive [Bacillus
           megaterium DSM 319]
          Length = 149

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +RVL+Y  +  N+  + I +IAEA  IS+  L KI+  L K G++ET+RG
Sbjct: 1   MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +    I I  VV+ TEE F + ECF      C +   C L +VL +A+ AF 
Sbjct: 61  RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDREGNFCVISPVCKLKNVLHEAMQAFI 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL QY++E L++N+  +
Sbjct: 121 KVLDQYTLEDLIQNKDEL 138


>gi|294497180|ref|YP_003560880.1| nitric oxide sensitive transcriptional regulator [Bacillus
           megaterium QM B1551]
 gi|294347117|gb|ADE67446.1| transcriptional regulator, nitric oxide sensitive [Bacillus
           megaterium QM B1551]
          Length = 149

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +RVL+Y  +  N+  + I +IAEA  IS+  L KI+  L K G++ET+RG
Sbjct: 1   MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +    I I  VV+ TEE F + ECF      C +   C L SVL +A+ AF 
Sbjct: 61  RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFI 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL QY++E L++N+  +
Sbjct: 121 KVLDQYTLEDLIQNKDEL 138


>gi|295401854|ref|ZP_06811818.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111004|ref|YP_003989320.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294976108|gb|EFG51722.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216105|gb|ADP74709.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 156

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++  A+       I +I++   ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGALEPGEKTNIKEISQTFSISENHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I  VV+ TEE+  + ECFASH   C L   C L SVL +AL AF 
Sbjct: 61  RNGGIRLAKQPEEINIGAVVRKTEENLSLVECFASHGNHCVLTPVCQLKSVLHEALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL  Y++  L+ N+ S++ IF+
Sbjct: 121 RVLDAYALSDLLANKQSLQAIFS 143


>gi|241664864|ref|YP_002983224.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12D]
 gi|309780331|ref|ZP_07675082.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
 gi|240866891|gb|ACS64552.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12D]
 gi|308921034|gb|EFP66680.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
          Length = 159

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 84/139 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I +IA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I + DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL  Y+++ LV   +++ +
Sbjct: 121 VLDGYTLQDLVDKPNAVSR 139


>gi|298291178|ref|YP_003693117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927689|gb|ADH88498.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 146

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RV+++   H+D    I +IA    +S   L K++Q L  AG VETVRGR
Sbjct: 1   MKLTRYTDYAMRVMIHLGTHDDRLASIPEIARIYDLSHSNLMKVVQDLGHAGYVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPADQI + ++V+ TE  F + +C       C +  +CGL  +L +A  AF  
Sbjct: 61  HGGVRLARPADQINLGELVRHTEAGFDLVDCQG-----CLIAPACGLPGILAEATRAFLS 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  L+  RS+++++F
Sbjct: 116 VLDKYTVADLLGRRSALRQLF 136


>gi|148554707|ref|YP_001262289.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148499897|gb|ABQ68151.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 147

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++ AI++D    I +I+    +S   L K++  L + G +ETVRGR
Sbjct: 1   MRLTRYTDYSLRVLIHLAINDDRLCSIGEISRTYDVSHNHLMKVVNALSRDGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA++IT+ +VV+ TEE F +A+C       C L   CGLT VL +A+ A   
Sbjct: 61  TGGMRLARPANEITVGEVVRRTEEGFQLADCSG-----CALSPVCGLTGVLAEAMQAMMT 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           V   Y +  L+ +R +++++ N
Sbjct: 116 VFDSYKVSDLLTDREAMRRLMN 137


>gi|187930672|ref|YP_001901159.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12J]
 gi|187727562|gb|ACD28727.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12J]
          Length = 159

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 83/139 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I +IA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I + DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL  Y+++ L    +++ +
Sbjct: 121 VLDGYTLQDLADKPNAVSR 139


>gi|302879674|ref|YP_003848238.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302582463|gb|ADL56474.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 161

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 87/139 (62%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +D G+R+LMY A+       I + ++   IS+  L KI   L K G++ ++RGR
Sbjct: 1   MKLTQYSDLGLRLLMYLALREGESVTIQEASDRFAISKNHLVKISHQLTKQGLIVSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP ++I + +V++ATEE+F + ECF + +  C + G C L++VL  AL AFF 
Sbjct: 61  NGGVRLARPPERINVEEVLRATEENFDLVECFNAAQNRCVISGECKLSAVLDAALAAFFK 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL+  S+  LV N  +I +
Sbjct: 121 VLSATSLADLVTNSQAIDQ 139


>gi|114328337|ref|YP_745494.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316511|gb|ABI62571.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 141

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ TDY IRV++Y +++ D   +I++IA    IS   L K++Q LV AG+V +VRGR
Sbjct: 1   MKFTRYTDYAIRVMIYLSVNQDRVVQIAEIARVYDISHNHLMKVVQGLVSAGLVSSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQIT+ ++V+ TE+ F + EC      DC     C   S+L +A  AF  
Sbjct: 61  SGGLLLGRPADQITVGELVRRTEDGFHLVEC-----ADCAARPGCQAPSILAEATKAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  +VR++S     FN
Sbjct: 116 VLDRYTLSDVVRDKSIAHAAFN 137


>gi|298247883|ref|ZP_06971688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550542|gb|EFH84408.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 152

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLT  TDY +RVL+Y A + D     I  IA+   IS   L KI+  L K G +ET+RG
Sbjct: 1   MHLTYHTDYALRVLLYLAAYPDTQLANIQDIADTYTISSNHLMKIVHKLGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL R    I I +VV+ TEE FF+ ECF S    C +   C L + L++AL AF 
Sbjct: 61  RNGGMRLARKPADIRIGEVVRQTEEDFFLVECFDSEHNCCVITPVCNLRTALQEALTAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
            VL +Y++  L  N++  +++
Sbjct: 121 SVLDKYTLADLTSNKALYQRL 141


>gi|329888279|ref|ZP_08266877.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846835|gb|EGF96397.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 141

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 85/142 (59%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y     D    I++IA+A  IS+  L K++  LV AG + +VRGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGARQDRLCSIAEIAQAYGISQNHLMKVVSDLVNAGYLVSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP DQI +  VV+ TE+ F + +C +     C +  +CGLT  L +AL AF  
Sbjct: 61  FGGVRLARPPDQINVGAVVRHTEDGFDLVDCGS-----CIIAPACGLTGALHQALAAFMK 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++E L+  R  +  +F 
Sbjct: 116 VLDGYTLEGLLSRRVDMAGLFE 137


>gi|167644820|ref|YP_001682483.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167347250|gb|ABZ69985.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 151

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++ A  +D    I +IA    IS+  L K++Q L KAG V TVRGR
Sbjct: 1   MRLTRYTDYAMRVLLHLAARDDGLASIGEIAALYDISQNHLMKVVQDLGKAGFVRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPADQI +  VV+ TEE F + +C       C +  +C L  VL +A  AF  
Sbjct: 61  GGGVALARPADQIVVGQVVRQTEEGFQLVDCS-----QCLIAPACTLPRVLNEATAAFIG 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++E L+  R  ++ +F 
Sbjct: 116 VLEKYTLEDLLDRRHQMRALFG 137


>gi|260431455|ref|ZP_05785426.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415283|gb|EEX08542.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 148

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHPDRLVTKSEIAEVCNISENHLAQVINQLSQLGYLSTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQI I  V +  E    +AECFA     CPL  +C L   L+ A   FF 
Sbjct: 61  NGGMELGRPADQIRIGSVFRHVEGDLPIAECFADADNTCPLTDACRLRLALQDAAEVFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + +++ LV +   + KI  
Sbjct: 121 SLDEITLDALVCDNDPLLKILQ 142


>gi|159044209|ref|YP_001533003.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911969|gb|ABV93402.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 150

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LMYCA+H     R S++A+A   SE  L +++  L + G +ETVRGR
Sbjct: 1   MRLTTRTNLAMRTLMYCAVHTGRNIRTSEVAKATNASENHLGQVINMLGQTGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A  IT+  V +  E     AECF + +  CPL+  C L   L +AL AF+ 
Sbjct: 61  GGGIRLARNAQDITVGGVFRVFEAGTPFAECFDAKECTCPLISVCRLKGALGEALMAFYR 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   ++E LV++ + +K +  
Sbjct: 121 SLDAITLESLVKDNTGLKDLLG 142


>gi|149203563|ref|ZP_01880532.1| rrf2 family protein [Roseovarius sp. TM1035]
 gi|149142680|gb|EDM30722.1| rrf2 family protein [Roseovarius sp. TM1035]
          Length = 150

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 86/142 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IR+LM+CA ++D     ++IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAIRLLMFCAANSDRLVTKAEIAERCNISESHLAQVINRLSQLGFLYTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP  QIT+ DV +  E+   VAECFA     CPL  +C L   L  A+ AF+ 
Sbjct: 61  TGGVRLGRPMSQITVGDVFRQLEQHTPVAECFADVDNTCPLTKACRLRVALVDAVEAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + +++ LV N  ++  IF+
Sbjct: 121 HLDEVTLDALVCNNDALFAIFS 142


>gi|254467326|ref|ZP_05080737.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
 gi|206688234|gb|EDZ48716.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
          Length = 149

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     ++IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHEDRLVTKAEIAECCNISENHLAQVINQLSQLGYLTTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DV +  E +  + ECFA     CPL G+C L   L  A  AF+ 
Sbjct: 61  NGGMNLGRPAAEIRIGDVFRDVEGNLPMVECFADADNTCPLAGACRLKVALADAAQAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   S+E LV +   + +I 
Sbjct: 121 SLDDISLEALVCDNHDLLRIL 141


>gi|138895291|ref|YP_001125744.1| hypothetical protein GTNG_1635 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250928|ref|ZP_03149612.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
 gi|134266804|gb|ABO66999.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209569|gb|EDY04344.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
          Length = 148

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++    ++     I +I+    +SE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTSYTEYALRVLLFLGTLDEGEKTNIKEISTIFSLSEHHLSKIVHELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I +  VV+ TE++  + ECFASH  +C L  +C L  VLR+AL AF 
Sbjct: 61  RNGGIRLAKRPEEIIVGAVVRETEDNLSLVECFASHGNECILTPACRLRFVLREALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ NR+S++ + 
Sbjct: 121 RVLDTYTLADLLENRTSLRALL 142


>gi|239827060|ref|YP_002949684.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. WCH70]
 gi|239807353|gb|ACS24418.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
          Length = 147

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++   +  +    I +I++   ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGTLDPEEKTNIKEISKTFSISENHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL R  ++I I  VV+ TEE+  + ECFA H   C L   C L  VL +AL +F 
Sbjct: 61  RNGGIRLARKPEEIRIGSVVRNTEENLSLVECFAGHGNHCVLTPVCQLKRVLHEALGSFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ N+  ++ IF
Sbjct: 121 QVLDSYTLADLLSNKQHLQMIF 142


>gi|311695841|gb|ADP98714.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
          Length = 145

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A+  D    I +IA++  IS+  L K++  L K G +ET+RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAVQGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL R    I+I  +V+ TE+   + ECF+S K  C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHRSPSDISIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119

Query: 121 VLTQYSIECLVRNR 134
           VL +Y++  +++ +
Sbjct: 120 VLDKYTLADVIQEQ 133


>gi|56477058|ref|YP_158647.1| transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56313101|emb|CAI07746.1| predicted transcriptional regulator [Aromatoleum aromaticum EbN1]
          Length = 153

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 80/138 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L++  +H +    I QIA+   IS+  L KI+  L   G+VET RGR
Sbjct: 1   MKLTDYTDYTLRTLIFLGLHRNEQVTIQQIADGYDISKNHLMKIIHRLSLDGLVETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +P D+I I  VV+A E+ F + ECF+     C L   C L +  R AL AFF 
Sbjct: 61  SGGVRLRKPPDEINIGQVVRAAEQEFALVECFSRVNNRCVLSPVCELQATFRDALEAFFA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL + ++  ++RN   ++
Sbjct: 121 VLDKRTLADILRNAEEVR 138


>gi|294677259|ref|YP_003577874.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|294476079|gb|ADE85467.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 168

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CA++ D   R  +IAEAC  SE  L +++  L + G +ET RGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAVNGDRIVRKHEIAEACNASENHLAQVVNTLAQRGFIETQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP DQI + +V++  E      EC       CPL  +C     +  AL AF+ 
Sbjct: 61  SGGLRLARPMDQIGVGEVLRTFEAVLPFVECLDGDNNTCPLCDACRFRDAIEAALEAFYT 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            + ++S+  LVR+  +++ + 
Sbjct: 121 AMDRHSVGDLVRDNDALEHLL 141


>gi|298290421|ref|YP_003692360.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296926932|gb|ADH87741.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 151

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RV++Y A   D P  IS++A A  IS+  L K++  L +AG V + RGR
Sbjct: 1   MRLTRYSDYAMRVMLYLAARGDRPCSISEMAAAYGISQNHLMKVMNDLGRAGYVASTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA++I + D+++ TE+   + +C       C L   CGL+SVL +AL AF  
Sbjct: 61  NGGFRLARPANEIVVGDLLRHTEDDLDLVDCPR-----CVLSRGCGLSSVLDEALMAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  L+  R   + + 
Sbjct: 116 VLDRYTLADLIDRRQGFQSLL 136


>gi|241765268|ref|ZP_04763249.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241365059|gb|EER59951.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 162

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  IS++AE+  IS   L KI+Q L   G++ET R
Sbjct: 1   MRLTQWTDYTLRVLMYCAASEGRVQPVTISEVAESYGISRSHLTKIVQELSAQGLLETTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA  I I  VV+ATE  F + ECF +    C L   C L  VL +A+ AF
Sbjct: 61  GRGGGMRLMKPAGDINIGAVVRATETDFNLVECFDAEHNQCRLSAHCYLKGVLGQAMQAF 120

Query: 119 FDVLTQYSIECLV 131
             VL + ++  L+
Sbjct: 121 IAVLDKVTLADLL 133


>gi|197106638|ref|YP_002132015.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480058|gb|ACG79586.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
          Length = 148

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+ +RVLMY A+H D    I++IA    IS+  L K++  L +AG +ETVRG+
Sbjct: 1   MRLTGYTDFALRVLMYIAVHPDRRPTIAEIAAGYGISKNHLMKVVFDLGRAGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+ I + ++V+ TE    +A C       C +  +C L  VL +A  AF D
Sbjct: 61  NGGLRLARPAESIGVGELVRRTEGDMALAPCLGRAD-GCVITPACRLKGVLVEARTAFMD 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y+I  L R   S++ +  
Sbjct: 120 VLDRYTIADLARQPESLRALLG 141


>gi|56420273|ref|YP_147591.1| hypothetical protein GK1738 [Geobacillus kaustophilus HTA426]
 gi|261419938|ref|YP_003253620.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC61]
 gi|297530100|ref|YP_003671375.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. C56-T3]
 gi|319766752|ref|YP_004132253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC52]
 gi|81347283|sp|Q5KZ63|NSRR_GEOKA RecName: Full=HTH-type transcriptional regulator nsrR
 gi|56380115|dbj|BAD76023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261376395|gb|ACX79138.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC61]
 gi|297253352|gb|ADI26798.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           C56-T3]
 gi|317111618|gb|ADU94110.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC52]
          Length = 147

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++  A+  +    I  IA A  ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGALDEEEKTNIKDIAAAFSISEHHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +   +I I  VV+ TEE+  + ECFA+H  +C L   C L   L +AL AF 
Sbjct: 61  RNGGIRLAKRPAEIVIGAVVRETEENLSLVECFAAHGNECVLTPVCRLRFALHEALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL  Y++  L+ +R+S++ +  
Sbjct: 121 RVLDAYTLADLLEDRASLRSLLK 143


>gi|319763901|ref|YP_004127838.1| transcriptional regulator, rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|330823835|ref|YP_004387138.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317118462|gb|ADV00951.1| transcriptional regulator, Rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|329309207|gb|AEB83622.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA     + P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L SVL  A  A+
Sbjct: 61  GRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCRMSSHCRLQSVLSNATRAY 120

Query: 119 FDVLTQYSIECLV 131
             VL   S+  LV
Sbjct: 121 LAVLDGLSVADLV 133


>gi|90019750|ref|YP_525577.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89949350|gb|ABD79365.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
           degradans 2-40]
          Length = 146

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVLMY  + +     I +IA++  IS+  L K++Q L   G ++ +RG+
Sbjct: 1   MHITRFTDYSLRVLMYAGLRDGELCTIQEIADSYNISKNHLMKVVQELNIKGYLKAIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA++I +  +V+ TE+ F + ECF S    C +  +C L S+L +ALNAF  
Sbjct: 61  NGGLTLGRPANEINLGSLVRDTEQDFNIVECF-SEADTCTITPNCKLKSILAQALNAFLG 119

Query: 121 VLTQYSIECLVRNRS 135
           VL  Y++E L+  R+
Sbjct: 120 VLDDYTLEDLLAPRT 134


>gi|121999179|ref|YP_001003966.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590584|gb|ABM63164.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 152

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 83/142 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RVL++          I  IAE   IS   L K++  L   G VETVRG+
Sbjct: 1   MRLTRHSDYALRVLLFLGAAQGELVTIGAIAERFEISRNHLMKVVNRLAAHGFVETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL +P + I + ++++ TEE F + ECF      C + G+C + +VL +AL+AF  
Sbjct: 61  RGGIRLAQPPETIPLGELLRRTEEDFTLVECFREEDQRCRIEGTCAVRAVLDEALHAFLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  L+ NR ++    N
Sbjct: 121 VLDRYTLADLLHNRGALAVDLN 142


>gi|121595468|ref|YP_987364.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120607548|gb|ABM43288.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 166

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA     + P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L +VL  A  A+
Sbjct: 61  GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120

Query: 119 FDVLTQYSIECLV 131
             VL  +++  LV
Sbjct: 121 LAVLDSFTVADLV 133


>gi|157691675|ref|YP_001486137.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680433|gb|ABV61577.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 143

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y A   N+  + I QIA+   IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +VV+ TE+   + ECF   K  C +   C L  VL +AL+A+ 
Sbjct: 61  RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY+++ L +N+ +++++ 
Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142


>gi|182678939|ref|YP_001833085.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634822|gb|ACB95596.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 150

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA-GIVETVRG 59
           M LT  TDY +R L++  +H +    I +IA+A  ISE  L K++Q L +  G +ET RG
Sbjct: 1   MRLTLHTDYALRTLIFLGLHQERRVSIHEIADAYGISENHLMKVIQKLGRPDGFIETTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
           R GG+RL R  D+I + DVV+ TEE   +  CF   K    C L G CGL S+L +AL A
Sbjct: 61  RGGGLRLARAPDKIRLDDVVRYTEEDMAIVACFQQAKDHEACVLTGYCGLQSILGEALAA 120

Query: 118 FFDVLTQYSIECLVR--NRSSIKKIFN 142
           F  VL +Y++  L+   +R+ I ++  
Sbjct: 121 FLAVLQRYTLADLLSSPDRAQIMRLLT 147


>gi|92118952|ref|YP_578681.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801846|gb|ABE64221.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           hamburgensis X14]
          Length = 150

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  ISE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDISEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P + I++ +V++ TE    +  CF      C +  SC L   L +A  AF +
Sbjct: 61  GGGLRLAKPVEAISLAEVIRTTEPDMAIVTCFKPVNAPCMINPSCVLKRALERAREAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  LV  R+ +  +  
Sbjct: 121 VLEGYTLADLVAPRARLASLLG 142


>gi|222111682|ref|YP_002553946.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221731126|gb|ACM33946.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
           TPSY]
          Length = 166

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA     + P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L +VL  A  A+
Sbjct: 61  GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120

Query: 119 FDVLTQYSIECLV 131
             VL   ++  LV
Sbjct: 121 LAVLDSLTVADLV 133


>gi|330993730|ref|ZP_08317664.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329759304|gb|EGG75814.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 151

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 79/141 (56%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y  IH D    I ++A+A  ISE  L KI+  L + G +ET+RGR
Sbjct: 1   MRLTLHTDYALRTLLYLGIHTDRLTSIREVAQAYGISENHLVKIIHRLGQGGFIETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP------LVGSCGLTSVLRKA 114
            GG+RL RPA  I I DVV+ TEE   +  C      + P      L  +C L  VL +A
Sbjct: 61  NGGLRLGRPAASILIGDVVRYTEEDMALVNCMQPADPERPDMKPCILADACRLRGVLGEA 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L +F  VL +Y++  ++ +R 
Sbjct: 121 LGSFIAVLDRYTLADVITDRE 141


>gi|194014188|ref|ZP_03052805.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
           7061]
 gi|194013214|gb|EDW22779.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
           7061]
          Length = 143

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y A   N+  + I QIA+   IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +VV+ TE+   + ECF   K  C +   C L  VL +AL A+ 
Sbjct: 61  RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y+++ L +N+ +++++ 
Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142


>gi|90418251|ref|ZP_01226163.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337923|gb|EAS51574.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 151

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RV++Y A   D  + ++ I+EA  IS   L K++  L KAG V T+RGR
Sbjct: 1   MRLTRYTDYALRVVIYLAARPDGLSSVADISEAYGISRNHLTKVVHELGKAGYVTTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA QI + ++V+ TE+ F +A+C       C +  +CG++ VL +A+ AF  
Sbjct: 61  SGGIRLARPASQIFVGELVRTTEDGFDLADCN-----RCIIQPACGMSGVLAEAVTAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +YS   L +    I  +F
Sbjct: 116 VLDRYSFADLPKREIDILSLF 136


>gi|163736848|ref|ZP_02144266.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389452|gb|EDQ13803.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 154

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IA  C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA +I I DV +  E +  + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++E L+ +  ++  +F
Sbjct: 121 SLDGITLEALICDNDALFALF 141


>gi|149376004|ref|ZP_01893770.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
 gi|149359641|gb|EDM48099.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
          Length = 145

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A+  D    I QIA++  IS   L K++  L K G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLVYLAVQGDELATIQQIADSYEISRNHLMKVVHQLNKKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL    + I +  +V+ TE+   V ECF+S    C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHMAPEDINVGILVRETEQDLSVVECFSSGDA-CRITPVCGLKSMFGEALAAFLE 119

Query: 121 VLTQYSIECLVRNR 134
           VL +Y++  ++ ++
Sbjct: 120 VLDRYTLADIIHDQ 133


>gi|323489216|ref|ZP_08094448.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
 gi|323397103|gb|EGA89917.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
          Length = 144

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y      D    I +I+EA  IS+  L K+   L KAG ++TVRG
Sbjct: 1   MRLTMYTDFSLRVLIYLGTKKPDKLTTIQEISEAYNISKNHLTKVTFELGKAGFIQTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      I +  VV+  E+ F + ECF      CP+   CGL  VL KAL+A+ 
Sbjct: 61  RGGGIRLADLPQNINVGTVVRKMEDDFHLVECFDPATNRCPISPVCGLRGVLGKALHAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++E L+ N+  +++I   
Sbjct: 121 TVLDEYTLEDLLFNKEGLREILKT 144


>gi|163743993|ref|ZP_02151362.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161382753|gb|EDQ07153.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
          Length = 154

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IA  C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA +I I DV +  E +  + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++E L+ +  ++  +F
Sbjct: 121 SLDGITLEALICDNDALFALF 141


>gi|23097747|ref|NP_691213.1| hypothetical protein OB0292 [Oceanobacillus iheyensis HTE831]
 gi|81747143|sp|Q8ETG9|NSRR_OCEIH RecName: Full=HTH-type transcriptional regulator nsrR
 gi|22775971|dbj|BAC12248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 147

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+L K TDY +RVL++  + +D     I +IAE   IS+  L K++  L K  +V T+RG
Sbjct: 1   MNLKKYTDYALRVLIFTGLKSDQELANIKEIAEVYQISQEHLRKVVHELTKMELVVTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L +PA +I I  +++  E  F + ECF      C +   C L  V+ KAL AFF
Sbjct: 61  RNGGIKLAKPASEINIGLLIRQLENDFVLLECFDKGTNHCVISPGCTLKHVINKALVAFF 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL +Y++E L++N   +
Sbjct: 121 KVLEEYTLEDLIKNEEEL 138


>gi|146277178|ref|YP_001167337.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555419|gb|ABP70032.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 144

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 82/141 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CAI+     R +++A AC  SE  L +++  L + G + TVRGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA+ I + DV +  E +    ECF+  +  CPL  SC L   L  AL+AF+ 
Sbjct: 61  CGGLALGRPAENIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALSAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + S+  +V+  + ++++ 
Sbjct: 121 SLDKLSLRDMVQENTELEELL 141


>gi|167563455|ref|ZP_02356371.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
 gi|167570625|ref|ZP_02363499.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
          Length = 161

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 77/131 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHNVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P  +I I DV++A+E  F + ECF  H   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPGRIGIGDVIRASETDFRLVECFDRHTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|77463446|ref|YP_352950.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462302|ref|YP_001043416.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639304|ref|YP_002525566.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332558324|ref|ZP_08412646.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387864|gb|ABA79049.1| transcriptional regulator / transcriptional regulator, BadM/Rrf2
           family [Rhodobacter sphaeroides 2.4.1]
 gi|126103966|gb|ABN76644.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160085|gb|ACM01065.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
 gi|332276036|gb|EGJ21351.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 144

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CAI+     R +++A AC  SE  L +++  L + G + TVRGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA++I + DV +  E +    ECF+  +  CPL  SC L   L  AL AF+ 
Sbjct: 61  CGGLALGRPAEKIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALAAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + S+  +V+  + ++ + 
Sbjct: 121 TLDKLSLRDMVQENTELEDLL 141


>gi|260429411|ref|ZP_05783388.1| putative transcriptional regulator [Citreicella sp. SE45]
 gi|260420034|gb|EEX13287.1| putative transcriptional regulator [Citreicella sp. SE45]
          Length = 159

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IRVLM+CA ++      ++IA  C  SE  L +++  L + G + T RGR
Sbjct: 1   MRVTKRTNIAIRVLMHCAANSGRLVTKAEIARRCNASENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQI I DV +A E    +AECFA     CPL  +C L   L  A +AF+ 
Sbjct: 61  HGGLELGRPADQIRIGDVFRALEAPVPLAECFADVDNTCPLTNACRLKIALTDAASAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   S++ LV + + +  I 
Sbjct: 121 TLDPISLDTLVCDNAPLMDIL 141


>gi|120555981|ref|YP_960332.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325830|gb|ABM20145.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
           VT8]
          Length = 145

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 83/133 (62%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A   D    I +IA++  IS+  L K++  L K G +ET+RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAAEGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL      I I  +V+ TE+   + ECF+S K  C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHMAPQDINIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119

Query: 121 VLTQYSIECLVRN 133
           VL +Y++  ++++
Sbjct: 120 VLDRYTLADVIQD 132


>gi|85714888|ref|ZP_01045874.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
 gi|85698374|gb|EAQ36245.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
          Length = 150

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  +SE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDVSEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA+ I + +V++ TE    +  C       C +  SC L   L +A  AF +
Sbjct: 61  GGGLRLAKPAEAIRLAEVIRTTEPDMAIVSCLKPLNAPCMINPSCVLKRALERAQQAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  L   R+ +  +  
Sbjct: 121 VLEGYTLADLTAPRARLSSLLG 142


>gi|108758209|ref|YP_635032.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
 gi|108462089|gb|ABF87274.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
          Length = 148

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT   DY +RVL+Y A     P    ++A+A  IS+  L +++Q L   G+V+   GR
Sbjct: 1   MHLTLHADYSLRVLLYLATRTGRPVSTQEMADAYGISKHHLVRVVQTLAGQGVVDARAGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L R    I +  V++A E  F + ECF   +  CP+  +CGL  VL +A  AF  
Sbjct: 61  SGGVVLARAPADIQVGSVLRAAEPDFHLVECFDRERNACPIAPACGLKGVLDEAREAFLA 120

Query: 121 VLTQYSI-ECLVRNRSSIKKIF 141
           VL +Y++ + L R+R +++  F
Sbjct: 121 VLDRYTLADLLRRSRPNLQDYF 142


>gi|88706864|ref|ZP_01104564.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
 gi|88698914|gb|EAQ96033.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
          Length = 147

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 80/139 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  ++Y +R+LMYCA+H     RI  +A A  IS+  L K  + L + G + TVRGR
Sbjct: 1   MRLTAYSNYSMRILMYCAMHPGQLVRIQDVATAFDISKAHLLKAARHLGQLGYLSTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A++I I  V++A E+S    ECF S    CP+ G+C LT + R+ L AF+ 
Sbjct: 61  SGGIQLGMAAERIDIGAVIRAVEDSGEFVECFNSSTNSCPIAGTCKLTGLFRRGLEAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
            L   ++  LV   + ++ 
Sbjct: 121 ELDGVTLADLVGTGTELRS 139


>gi|259416348|ref|ZP_05740268.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
 gi|259347787|gb|EEW59564.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
          Length = 155

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA++       S+IA+ C ISE  L +++  L + G ++T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCALNEGRLVTKSEIAQRCNISENHLAQVVNQLSQLGFLKTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R AD+I I DV +  E    + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGLNLSRSADEICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALSRAGEAFYS 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++E L  +   +++I 
Sbjct: 121 ALDGVTLESLTCDNFDLQRIL 141


>gi|167837274|ref|ZP_02464157.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 161

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 77/131 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCAANPDRLITIAELAERHAVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P  +I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLAMPPARIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|311031562|ref|ZP_07709652.1| nitric oxide sensitive transcriptional regulator [Bacillus sp.
           m3-13]
          Length = 158

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMY--CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  TDY +RVL+Y   A  N+   +I +IAEA  IS+  L K+   L K G VET+R
Sbjct: 1   MKLTLYTDYSLRVLLYLASAPENNKLIQIKEIAEAYGISKNHLMKVTFHLGKLGYVETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L +   ++ I ++V+ TEE F + ECF  H   C +   C L  VL +A  AF
Sbjct: 61  GRNGGLLLAKEPKELNIGELVRQTEEDFHIVECFQDH-ASCVISPHCKLKGVLYQATQAF 119

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL QY++  L+ N+  +
Sbjct: 120 ISVLDQYTLADLITNKEQL 138


>gi|162146319|ref|YP_001600778.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543678|ref|YP_002275907.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784894|emb|CAP54437.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531355|gb|ACI51292.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 146

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y     D    I +IA+A  ISE  L KI+  L + G +ETVRGR
Sbjct: 1   MRLTLHTDYALRTLIYLGTRTDRLVSIHEIAQAYGISENHLMKIIHRLGRGGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP------LVGSCGLTSVLRKA 114
            GG+RL R AD I I DVV+ TEE   +  C        P      L  +C L  VL +A
Sbjct: 61  GGGLRLARAADAIRIGDVVRYTEEDMALVGCMQGDDPSAPDARPCVLADACRLKGVLGEA 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L AF  VL +Y++  ++  R+
Sbjct: 121 LGAFTAVLDRYTLADMITERT 141


>gi|53725252|ref|YP_102394.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|52428675|gb|AAU49268.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
          Length = 165

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 4   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 64  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 124 ELDGATLADLV 134


>gi|124385754|ref|YP_001028829.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126450911|ref|YP_001081260.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|254357765|ref|ZP_04974038.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|124293774|gb|ABN03043.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126243781|gb|ABO06874.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|148026892|gb|EDK84913.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
          Length = 162

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLTDLV 131


>gi|67641803|ref|ZP_00440570.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|121599140|ref|YP_993712.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|167001110|ref|ZP_02266911.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|167895170|ref|ZP_02482572.1| Rrf2 family protein [Burkholderia pseudomallei 7894]
 gi|167919806|ref|ZP_02506897.1| Rrf2 family protein [Burkholderia pseudomallei BCC215]
 gi|254178664|ref|ZP_04885319.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|254199293|ref|ZP_04905659.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|254205604|ref|ZP_04911956.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|254296933|ref|ZP_04964386.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|121227950|gb|ABM50468.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|147748889|gb|EDK55963.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|147753047|gb|EDK60112.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|157807290|gb|EDO84460.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|160699703|gb|EDP89673.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|238522791|gb|EEP86233.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|243063060|gb|EES45246.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
          Length = 162

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|53719983|ref|YP_108969.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76809787|ref|YP_334214.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|126442125|ref|YP_001059734.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126454292|ref|YP_001067019.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277895|ref|ZP_01764610.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|167720485|ref|ZP_02403721.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
 gi|167739474|ref|ZP_02412248.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167816678|ref|ZP_02448358.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167846586|ref|ZP_02472094.1| putative transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|167903554|ref|ZP_02490759.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911804|ref|ZP_02498895.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|237813128|ref|YP_002897579.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|242315306|ref|ZP_04814322.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254184271|ref|ZP_04890861.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|254191305|ref|ZP_04897809.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195724|ref|ZP_04902150.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254261403|ref|ZP_04952457.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
 gi|52210397|emb|CAH36378.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76579240|gb|ABA48715.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|126221618|gb|ABN85124.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126227934|gb|ABN91474.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134251545|gb|EBA51624.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|157938977|gb|EDO94647.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169652469|gb|EDS85162.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|184214802|gb|EDU11845.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|237506106|gb|ACQ98424.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|242138545|gb|EES24947.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254220092|gb|EET09476.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
          Length = 162

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|167825083|ref|ZP_02456554.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
 gi|217420382|ref|ZP_03451887.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|226199936|ref|ZP_03795486.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|217395794|gb|EEC35811.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|225927992|gb|EEH24029.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 162

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|254510320|ref|ZP_05122387.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
 gi|221534031|gb|EEE37019.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
          Length = 148

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 78/141 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +RVLMYCA H D     ++IAE C ISE  L +++  L +   + T RGR
Sbjct: 1   MRITKRTNIAVRVLMYCAAHPDRLVTKAEIAEVCNISENHLAQVINQLSQLDYLSTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R ADQI I  V +  E +  +AECFA     CPL  +C L   L+ A   F+ 
Sbjct: 61  NGGTVLARAADQIRIGSVFRHVEGALPIAECFADADNTCPLTDACRLRLALQDAAEVFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   +++ L+ +  ++ +I 
Sbjct: 121 SLDDITLDALICDNDNLLRIL 141


>gi|222150933|ref|YP_002560086.1| hypothetical protein MCCL_0683 [Macrococcus caseolyticus JCSC5402]
 gi|222120055|dbj|BAH17390.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 138

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A   ++  +I +IA    IS+  L K++  L   G +ET RGR
Sbjct: 1   MKLTLYSDYSLRVLMYIA-RQEHRVQIDEIANFYGISKNHLTKVVNNLATLGYIETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+    ++I I  +++ TEE F + ECF      CP+ G CGL  VL +AL A+  
Sbjct: 60  GGGIRIKMAPEEINIGALIRKTEEHFNLVECFDRETNTCPIAGICGLQGVLSEALGAYLS 119

Query: 121 VLTQYSIECLVRNRSS 136
           VL  Y++  ++ N+ +
Sbjct: 120 VLDSYTLNDILHNKRT 135


>gi|85714309|ref|ZP_01045297.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
 gi|85698756|gb|EAQ36625.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
          Length = 165

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 24  MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 83

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+S+   CP+  SC L + LR+ALNAF  
Sbjct: 84  SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 142

Query: 121 VLTQYSIECLVRN 133
            L +Y++  L+ N
Sbjct: 143 TLDRYTLADLILN 155


>gi|332285364|ref|YP_004417275.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429317|gb|AEC20651.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 151

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LMY   H D    I+++A+A  ISE  L KI   L + G +ET+RG+
Sbjct: 1   MRLTTMTDYAMRLLMYVGRHPDRLCTIAEVAQAYGISEPHLMKITHRLAQRGWLETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I +  VV+ TE    + ECF ++   C L G C LT+++  AL  F  
Sbjct: 61  NGGMRLAHPPEEINLGAVVRDTENDLALVECFVANNA-CTLSGQCNLTAIIDGALQQFMQ 119

Query: 121 VLTQYSI 127
            L +Y++
Sbjct: 120 HLDRYTL 126


>gi|94498334|ref|ZP_01304893.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
 gi|94422214|gb|EAT07256.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
          Length = 141

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y          I+ IA A  IS+  L K++  LV AG +E+VRGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGRQPGELASIAVIARAFAISQNHLMKVVNDLVNAGYLESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I +  +V+ TE+ F +  C A     C +  +CGLTSVL +AL AF  
Sbjct: 61  NGGIRLARPPHEINVGALVRQTEDDFDLVGCGA-----CVIAPACGLTSVLDEALLAFLK 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL  YS+  ++  +     + 
Sbjct: 116 VLDGYSLADVLARKGDFSHLL 136


>gi|167581217|ref|ZP_02374091.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
 gi|167619304|ref|ZP_02387935.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
 gi|257138520|ref|ZP_05586782.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 161

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++++E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|83720448|ref|YP_442322.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|83654273|gb|ABC38336.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 164

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 4   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++++E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 64  GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 124 ELDGATLADLV 134


>gi|254443774|ref|ZP_05057250.1| rrf2 family protein (putative transcriptional regulator)
           [Verrucomicrobiae bacterium DG1235]
 gi|198258082|gb|EDY82390.1| rrf2 family protein (putative transcriptional regulator)
           [Verrucomicrobiae bacterium DG1235]
          Length = 144

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TDY +R+L+Y  ++ +    +++IA+A  IS+  L KI   L + GIV   RG+
Sbjct: 1   MELTKFTDYSLRMLLYLGLNEERLVSLTEIADAYSISKNHLVKISAHLSQNGIVAATRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +   +I I  VV++TE    + ECF      C +  +C L SVL+KA  AF+ 
Sbjct: 61  GGGIRLAKQPHEINIGTVVRSTEGHTPLVECFDPENNRCCITKNCTLKSVLKKAEKAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L Q++++ L++NR  +   F
Sbjct: 121 ELDQHTLQDLLKNRKGLAATF 141


>gi|56695347|ref|YP_165695.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56677084|gb|AAV93750.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 148

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 83/145 (57%), Gaps = 6/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +TKRT+  +R+LM+CA H   P R+   S+IAE C +SE  L +++  L + G + T 
Sbjct: 1   MRITKRTNIAVRLLMFCAAH---PGRLVTKSEIAEVCNVSENHLAQVINQLSQLGFLTTQ 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+ L   AD I I +V +  E +  + ECFA     CPL  +C L   LR A  A
Sbjct: 58  RGRNGGMCLGMAADAIRIGEVFRHVEGNLPMVECFADADNSCPLTDACRLRLALRDAAQA 117

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F+  L + +++ LV + + + KI N
Sbjct: 118 FYASLDEITLDALVCDNTDLLKILN 142


>gi|212632981|ref|YP_002309506.1| hypothetical protein swp_0072 [Shewanella piezotolerans WP3]
 gi|212554465|gb|ACJ26919.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 149

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+H +  +  RIS+I +   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDFGLRTLMYLALHPERESLFRISEITDVFDLSANHISKVVHHLGKLGYLKTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L  PA +I + DVV+A E S    +C   +   C    +C L  VL +A+NA+
Sbjct: 61  GKSGGFKLAMPASEINVGDVVRALENSLSSIDCSKPY---CLFTPACKLKGVLAEAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y++E +V N+  +K + 
Sbjct: 118 LAVLDGYTLEMIVTNKKELKSLL 140


>gi|75674940|ref|YP_317361.1| hypothetical protein Nwi_0743 [Nitrobacter winogradskyi Nb-255]
 gi|74419810|gb|ABA04009.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 150

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 75/131 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  +SE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP + I + +V++ TE    V  C       C +   C L   + +A  AF D
Sbjct: 61  GGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCKINPCCVLKRAMERAQQAFMD 120

Query: 121 VLTQYSIECLV 131
           VL  Y++  LV
Sbjct: 121 VLEGYTLADLV 131


>gi|75676837|ref|YP_319258.1| hypothetical protein Nwi_2653 [Nitrobacter winogradskyi Nb-255]
 gi|74421707|gb|ABA05906.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 142

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 1   MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+S+   CP+  SC L + LR+ALNAF  
Sbjct: 61  SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 119

Query: 121 VLTQYSIECLV 131
            L +Y++  L+
Sbjct: 120 TLDRYTLADLI 130


>gi|225075994|ref|ZP_03719193.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
           NRL30031/H210]
 gi|224952709|gb|EEG33918.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
           NRL30031/H210]
          Length = 152

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNISTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+   E   V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGENN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLV 131
            L QYS++ L+
Sbjct: 119 HLDQYSLQDLL 129


>gi|121635429|ref|YP_975674.1| hypothetical protein NMC1725 [Neisseria meningitidis FAM18]
 gi|120867135|emb|CAM10902.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254672733|emb|CBA06710.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325198879|gb|ADY94335.1| transcriptional repressor nsrR [Neisseria meningitidis G2136]
          Length = 147

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    V EC  S+  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLATPPDRINIGSVVRHLEPMQLV-ECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|304386705|ref|ZP_07368978.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
 gi|261391951|emb|CAX49413.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           8013]
 gi|304339220|gb|EFM05301.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
          Length = 147

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    V EC  S+  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|74318032|ref|YP_315772.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057527|gb|AAZ97967.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 156

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 79/139 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY A H D    IS+IAE   IS+  L K++  L  +G+V+T+RGR
Sbjct: 1   MRLTTYTDYALRTLMYLATHRDRLVTISEIAEVHGISKNHLMKVVYQLGLSGLVDTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +IT+ +VV++TE  F +AECF      C    +C L  VL  A  A+  
Sbjct: 61  NGGLRLKREPTEITVGEVVRSTETDFDMAECFDPSGDRCLYSPACVLKDVLSSATLAYLG 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL + ++  LV      KK
Sbjct: 121 VLDKVTLGDLVGGGRGRKK 139


>gi|326385353|ref|ZP_08206998.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210159|gb|EGD60931.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 141

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RV++Y   H D    I++IA A  IS+  L K++  L   G V+ +RGR
Sbjct: 1   MRLTRFSDYAVRVIIYLGAHTDRLCSIAEIARAYDISQNHLMKVVSDLAAHGYVQALRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +I I  +++ TE +  +  C      DC L G+C L   L +ALNAFF 
Sbjct: 61  NGGIRLGRPAGEINIGKLIRHTEGTIDLVGCE-----DCKLAGACDLPDPLNEALNAFFA 115

Query: 121 VLTQYSI 127
           VL +Y++
Sbjct: 116 VLERYTL 122


>gi|71908531|ref|YP_286118.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71848152|gb|AAZ47648.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
           aromatica RCB]
          Length = 159

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +RVLMY     D    I++IA A  IS+  L K+   L + G +ETVRG+
Sbjct: 1   MRLSAFSDYSLRVLMYLGAQTDRLATIAEIAAAHDISKSHLMKVAYQLGRGGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     +I + +V++ TE  F +AECFA  K  C + G+C L ++L +AL A F 
Sbjct: 61  GGGLRLAHEPQEIVVGEVIRQTESDFTLAECFAD-KSTCRIQGACCLPAILNEALKAMFL 119

Query: 121 VLTQYSIECLVRN 133
           VL  Y++  L+R 
Sbjct: 120 VLDGYTLADLLRT 132


>gi|326403994|ref|YP_004284076.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050856|dbj|BAJ81194.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 150

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT  TDYG+R L++ A+  D    I++IA +  IS+  L K++  L +AG+VET+RGR
Sbjct: 1   MHLTMFTDYGLRTLIFLALRPDRQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA  I + +V++A E    +  C    +  C + G C L +V+ +A +AF  
Sbjct: 61  HGGMRLARPAANIGLGEVIRAMEPGLALVACQEGGR--CAIGGCCDLQAVMNEARDAFLG 118

Query: 121 VLTQYSIECLV 131
           V  +Y++  +V
Sbjct: 119 VFDRYTLADVV 129


>gi|124515741|gb|EAY57250.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
 gi|206602245|gb|EDZ38727.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 169

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 77/141 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY IRVL+Y +   D P  IS++AE+  IS   L K++  L ++G + T RG+
Sbjct: 1   MQLTLYSDYSIRVLLYLSAKTDGPATISEVAESYGISRNHLVKVVHNLSQSGYIRTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+ L R   +I+I  +++ TE  F + EC       CP+   C L +V R AL AF  
Sbjct: 61  KGGMVLGRDPKEISIGGLLRQTEPDFRLVECLQEESSGCPIDQVCSLKAVFRTALYAFLK 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  +  N   +K I 
Sbjct: 121 TLDGYTLADITGNVGLLKPIL 141


>gi|149915740|ref|ZP_01904265.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. AzwK-3b]
 gi|149810322|gb|EDM70167.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. AzwK-3b]
          Length = 150

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 80/144 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IRVLM+C  + D     S+IA  C  SE  L +++  L +   + T RGR
Sbjct: 1   MRITKRTNIAIRVLMFCGANIDRLVTKSEIAARCNTSESHLAQVINRLAQLDFLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP D+I I DV +  E +  +AECFA     CPLV +C L   +  A  AF+ 
Sbjct: 61  SGGIALARPMDEIIIGDVFRQLESNVPIAECFADVDNTCPLVTACRLRHAIADAAEAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
            L + +++ LV +  ++  IF  G
Sbjct: 121 HLDKITLDVLVCDNVALLDIFMPG 144


>gi|157964032|ref|YP_001504066.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
           ATCC 700345]
 gi|157849032|gb|ABV89531.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
           ATCC 700345]
          Length = 149

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYG+R LMY A+H++  +  RI++I E   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDYGLRTLMYLALHSERESLFRIAEITEVFDLSANHISKVVHHLGKLGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PA +I I  VV+A E S    +C    K  C    +C L   L  A+NA+
Sbjct: 61  GKSGGFKLAKPASEINIGQVVRALENSLAPIDC---SKPYCLFTPACKLRGALADAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y+++ +V N+  +K + 
Sbjct: 118 LAVLDGYTLDMIVTNKQELKSLL 140


>gi|292490559|ref|YP_003525998.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291579154|gb|ADE13611.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
           Nc4]
          Length = 153

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 83/138 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y ++H++    IS+IA +  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLSLHDEQLATISEIASSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  ++I +  +V+ TE  F VAECF +    C +   C L  V  +A  AF  
Sbjct: 61  GGGMRLSQAPEKINLGRIVQQTEGRFDVAECFNTTHNTCSISSCCQLKDVFWEARCAFLA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +Y++  +++N++ ++
Sbjct: 121 VLNRYTLADVIKNKNELR 138


>gi|300115490|ref|YP_003762065.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299541427|gb|ADJ29744.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 153

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 82/138 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y  ++N     IS+IA++  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + I I  VV+ TE  F +AECF +    C +   C L +V  +A  AF  
Sbjct: 61  GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCQLKNVFWEARCAFIA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +Y++  +V+N+S ++
Sbjct: 121 VLDRYTLADIVKNKSQLR 138


>gi|77166414|ref|YP_344939.1| hypothetical protein Noc_2967 [Nitrosococcus oceani ATCC 19707]
 gi|254435367|ref|ZP_05048874.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
 gi|76884728|gb|ABA59409.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207088478|gb|EDZ65750.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
          Length = 153

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 82/138 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y  ++N     IS+IA++  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + I I  VV+ TE  F +AECF +    C +   C L +V  +A  AF  
Sbjct: 61  GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCELKNVFWEARCAFIA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL +Y++  +V+N+S ++
Sbjct: 121 VLDRYTLADIVKNKSQLR 138


>gi|58039326|ref|YP_191290.1| CDG1D protein [Gluconobacter oxydans 621H]
 gi|58001740|gb|AAW60634.1| CDG1D protein [Gluconobacter oxydans 621H]
          Length = 149

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++  +H  +   I +IA+A  ISE  L K++  L + G V TVRGR
Sbjct: 1   MRLTLHTDYALRVLIHLGVHTSHRVSIREIAQAYRISENHLVKVVHRLGQGGFVTTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+ L RPA +I +  VV+ TE+   + +C   +  D   C L  +C L  VL  AL A
Sbjct: 61  GGGLELARPASEINVGAVVRFTEDDMTLVDCEGRNSTDGTPCVLSPACVLRGVLGDALGA 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
           F  VL +Y++  L+  R +
Sbjct: 121 FLTVLDRYTLADLLTGREA 139


>gi|119384427|ref|YP_915483.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119374194|gb|ABL69787.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 147

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y     +    I +IA+A  IS+  L K++  LV AG + ++RGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGREPERLCPIGEIAQAYGISQNHLMKVINDLVNAGFLASLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I I  +V+ TE+ F +  C      +C +  +CGLTSVL +A+  F  
Sbjct: 61  NGGIRLARPPAEINIGALVRHTEDDFDLVGCG-----NCIIAPACGLTSVLDEAMAGFMA 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  YS+  ++  R     + N
Sbjct: 116 VLDGYSLADVLARRPDFSYLLN 137


>gi|149923899|ref|ZP_01912287.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
 gi|149815242|gb|EDM74789.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
          Length = 145

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 73/127 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TDY +RVL+Y A  +       +I+EA  IS   L K++  L +AG +   RGR
Sbjct: 1   MRLTKHTDYALRVLIYVAAADGRQVSTDEISEAYGISGHHLVKVVGTLGRAGFLAVKRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L R  +++ + +V++ATE  F + EC      +CPL G+C L S L +A  AF  
Sbjct: 61  GGGVTLARDPEELRLGEVLEATEPDFAMVECMQEGNTECPLTGACSLVSPLYEAQRAFIA 120

Query: 121 VLTQYSI 127
            L QY++
Sbjct: 121 SLDQYTL 127


>gi|117918506|ref|YP_867698.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117610838|gb|ABK46292.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
          Length = 151

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRKTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C   +   C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QYS++ +V NR+ +
Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136


>gi|261379265|ref|ZP_05983838.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
 gi|284797696|gb|EFC53043.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
          Length = 152

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  VV+   E   V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADNPENINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLV 131
            L QYS++ L+
Sbjct: 119 HLDQYSLQDLL 129


>gi|114045552|ref|YP_736102.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
 gi|113886994|gb|ABI41045.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
          Length = 151

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C   +   C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVQAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QYS++ +V NR+ +
Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136


>gi|294788820|ref|ZP_06754061.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
 gi|294483302|gb|EFG30988.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
          Length = 152

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL++ AI++D    I+ IA+A  IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQQTDYALRVLIFAAINDDSLVNIATIADAYQISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +I +  VV+  E    V ECF  +   C L   C L  +L   + AF  
Sbjct: 61  GGGLRLARPAVEICVGAVVRHMEH-LTVVECFGENN-QCILTPCCRLMDILHGGMKAFLS 118

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L  Y++  L+ NR + + ++ 
Sbjct: 119 HLDGYTLADLIGNRQAHELLYQ 140


>gi|296313550|ref|ZP_06863491.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
 gi|296839891|gb|EFH23829.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
          Length = 148

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|113968387|ref|YP_732180.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883071|gb|ABI37123.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
          Length = 151

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C   +   C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QYS++ +V NR+ +
Sbjct: 118 LNVLDQYSLQDIVSNRNEL 136


>gi|161870639|ref|YP_001599812.1| hypothetical protein NMCC_1709 [Neisseria meningitidis 053442]
 gi|161596192|gb|ABX73852.1| nitric oxide-sensitive repressor [Neisseria meningitidis 053442]
          Length = 147

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|319639116|ref|ZP_07993872.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
 gi|317399593|gb|EFV80258.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
          Length = 152

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 81/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+   E   V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLV 131
            L QYS++ L+
Sbjct: 119 HLDQYSLQDLL 129


>gi|241760757|ref|ZP_04758848.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
           SK114]
 gi|241318654|gb|EER55206.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
           SK114]
          Length = 152

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA+   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDSLVNISTIAKTYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+   E   V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLV 131
            L QYS++ L+
Sbjct: 119 HLDQYSLQDLL 129


>gi|86139275|ref|ZP_01057845.1| rrf2 family protein [Roseobacter sp. MED193]
 gi|85824119|gb|EAQ44324.1| rrf2 family protein [Roseobacter sp. MED193]
          Length = 157

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 78/141 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA + D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAANADRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  ++I I +V +  E +  + ECFA     CPL  +C L   L  A  AF+ 
Sbjct: 61  NGGMALGRRPEEIQIGNVFRDVEGALPMVECFADADNTCPLASACRLKVALSDAAQAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++E LV +   + +I 
Sbjct: 121 SLDDITLEALVCDNHDLMRIL 141


>gi|167621980|ref|YP_001672274.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352002|gb|ABZ74615.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           halifaxensis HAW-EB4]
          Length = 149

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYG+R LMY A++++  +  RIS+I E   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDYGLRTLMYLAVNSERESLFRISEITEVFDLSANHISKVVHHLGKLGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PA +I I  VV+A E S    +C   +   C    +C L   L  A+NA+
Sbjct: 61  GKSGGFKLAKPAAEINIGQVVRALENSLAPIDCSKPY---CLFTPACKLKGALGDAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y+++ +V N+  +K + 
Sbjct: 118 LAVLDAYTLDMIVTNKQELKSLL 140


>gi|114767192|ref|ZP_01446069.1| Transcriptional regulator [Pelagibaca bermudensis HTCC2601]
 gi|114540662|gb|EAU43732.1| Transcriptional regulator [Roseovarius sp. HTCC2601]
          Length = 188

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 78/141 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+   R+LM CA++ D   R ++IA+ C  S      ++Q L   G +E  RGR
Sbjct: 34  MRLTTRTNLAARILMACAVNPDRRLRTAEIADLCNCSTNHAAHVVQRLHAEGYLEAQRGR 93

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   Q++I  V +  E     AECF +    CPLVG+C L S +R+AL AF+ 
Sbjct: 94  AGGIRLARAVPQVSIGAVFRLFESEIPFAECFDADTNSCPLVGTCRLRSYIRRALEAFYH 153

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   +++ LVR    + ++ 
Sbjct: 154 ELDLVTLDDLVRGNCGLTELL 174


>gi|121604234|ref|YP_981563.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593203|gb|ABM36642.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 168

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 77/132 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY A + +    I  IA+A  I++  L K++  L   G+VE++RGR
Sbjct: 1   MRLTTYTDYALRTLMYLAANRERLVTIQDIADAHGIAKNHLTKVVHQLGILGVVESLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   QI I  VV++TE  F++AECF   K  C +  +C L  VL  A  A+  
Sbjct: 61  NGGLRLGREPGQINIGAVVRSTEPDFYMAECFDPGKSHCIMSAACSLKDVLNDATMAYLA 120

Query: 121 VLTQYSIECLVR 132
           VL   +++ L++
Sbjct: 121 VLDGVTLDYLMK 132


>gi|15676349|ref|NP_273485.1| hypothetical protein NMB0437 [Neisseria meningitidis MC58]
 gi|254805531|ref|YP_003083752.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|7225662|gb|AAF40875.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254669073|emb|CBA07596.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|308388639|gb|ADO30959.1| hypothetical protein NMBB_0481 [Neisseria meningitidis alpha710]
 gi|316984950|gb|EFV63906.1| rrf2 family protein [Neisseria meningitidis H44/76]
 gi|325128852|gb|EGC51711.1| transcriptional repressor nsrR [Neisseria meningitidis N1568]
 gi|325130805|gb|EGC53539.1| transcriptional repressor nsrR [Neisseria meningitidis OX99.30304]
 gi|325132983|gb|EGC55660.1| transcriptional repressor nsrR [Neisseria meningitidis M6190]
 gi|325134903|gb|EGC57536.1| transcriptional repressor nsrR [Neisseria meningitidis M13399]
 gi|325137004|gb|EGC59601.1| transcriptional repressor nsrR [Neisseria meningitidis M0579]
 gi|325138971|gb|EGC61521.1| transcriptional repressor nsrR [Neisseria meningitidis ES14902]
 gi|325140951|gb|EGC63458.1| transcriptional repressor nsrR [Neisseria meningitidis CU385]
 gi|325142952|gb|EGC65310.1| transcriptional repressor nsrR [Neisseria meningitidis 961-5945]
 gi|325144975|gb|EGC67258.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240013]
 gi|325199624|gb|ADY95079.1| transcriptional repressor nsrR [Neisseria meningitidis H44/76]
 gi|325202752|gb|ADY98206.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240149]
 gi|325203544|gb|ADY98997.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240355]
 gi|325205505|gb|ADZ00958.1| transcriptional repressor nsrR [Neisseria meningitidis M04-240196]
 gi|325208748|gb|ADZ04200.1| transcriptional repressor nsrR [Neisseria meningitidis NZ-05/33]
          Length = 147

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|119899391|ref|YP_934604.1| AAU3 protein [Azoarcus sp. BH72]
 gi|119671804|emb|CAL95718.1| AAU3 protein precursor [Azoarcus sp. BH72]
          Length = 153

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +RVLMY   H D  + +++IA A  ISE  L K++  L ++G V+T+RG+
Sbjct: 1   MRLSTFSDYCLRVLMYLGEHADRLSTVAEIARAHDISESHLTKVVHQLGRSGYVDTLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +I + +V++ TE  F + ECF      C + G+C L +VL +AL A F 
Sbjct: 61  GGGMRLARAPREIVLGEVLRQTETDFALVECFGDEP-HCYMEGACQLQAVLGEALGAMFR 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL  Y++  L++      ++ 
Sbjct: 120 VLDGYTLADLLQRPDGSTRVL 140


>gi|119944403|ref|YP_942083.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
           ingrahamii 37]
 gi|119863007|gb|ABM02484.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
           ingrahamii 37]
          Length = 147

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +R+L+Y AI+ND  + I++IA++  IS+  L KI+Q L   G +  +RG+
Sbjct: 1   MHITRYTDYSLRILIYLAINNDQLSTINEIAQSYHISKNHLMKIVQQLNVKGYLLAIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L R    I I  +V+  E+S  + ECF+ +   C +  SC L  +  +A  +FF+
Sbjct: 61  NGGIKLNRDPGDINIGSLVREMEDSNKLVECFSDNN-HCVISPSCQLKGIFAEAQESFFN 119

Query: 121 VLTQYSIECLV 131
            L +Y++  LV
Sbjct: 120 TLDKYTLADLV 130


>gi|209884294|ref|YP_002288151.1| putative transcriptional regulator [Oligotropha carboxidovorans
           OM5]
 gi|209872490|gb|ACI92286.1| putative transcriptional regulator [Oligotropha carboxidovorans
           OM5]
          Length = 149

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY A  ND    I + AEA  IS   L K+   L +AG ++  RGR
Sbjct: 1   MRLTNFSDYALRILMYAAAQNDRLITIEETAEAYGISRAHLMKVANQLTRAGYLKATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  D+I + DV++ATE  F + EC  ++ + C +   C L   L +AL AF +
Sbjct: 61  SGGLALAKRPDRIRLSDVLRATEPDFSLVECLTTNNL-CVISPRCRLRGALNEALAAFLE 119

Query: 121 VLTQYSIECLV 131
            L  Y+++ L+
Sbjct: 120 TLDGYTLDDLI 130


>gi|192359950|ref|YP_001982031.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
 gi|190686115|gb|ACE83793.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
          Length = 160

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +RVL+Y A+  +  + I +IA++  IS+  L K++Q L   G ++ VRG+
Sbjct: 16  MRITRYTDYSLRVLIYVALKGEAISTIREIADSYGISKNHLMKVVQELNNKGYLQAVRGK 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  +V+ TEE F + ECF+    +C L  +C L  VL KAL AFF 
Sbjct: 76  HGGLRLNGRPEDINIGRLVRHTEEDFALVECFSGG--ECSLTPACRLKGVLVKALEAFFQ 133

Query: 121 VLTQYSIECLV 131
           VL  Y++  L+
Sbjct: 134 VLDGYTLADLL 144


>gi|170750041|ref|YP_001756301.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656563|gb|ACB25618.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 163

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +H    + I+ IA A  ISE  L K++  L + G++ T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLHEPEQSSIAAIARAYGISENHLTKVVHQLGRLGLIRTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P  +I +  VV+ TE+   + ECF      C +   C L  VL +AL AF  
Sbjct: 61  GGGLRLAMPPGEIVVGAVVRQTEDDLALVECFGGGA--CAITAPCRLRRVLGEALAAFLA 118

Query: 121 VLTQYSIECLV 131
           VL +Y++  L+
Sbjct: 119 VLDRYTLADLL 129


>gi|134094873|ref|YP_001099948.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738776|emb|CAL61823.1| HTH-type transcriptional regulator nsrR [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 75/136 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY  ++ D    I  IA+   IS+  L K++  L  +G+VETVRGR
Sbjct: 1   MRLTSYTDYALRTLMYLGMNRDNLVTIQDIADLHGISKNHLMKVVHQLGLSGMVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      I I +VV+ TE  FF+AECF      C    SC L  VL  A+ A+  
Sbjct: 61  NGGLKLGHEPADINIGEVVRNTETDFFMAECFDPASNACVYAPSCILKGVLNDAIEAYLA 120

Query: 121 VLTQYSIECLVRNRSS 136
           VL   ++  L+  +++
Sbjct: 121 VLNNVTLADLIAQKNA 136


>gi|148260795|ref|YP_001234922.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
           JF-5]
 gi|146402476|gb|ABQ31003.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
           JF-5]
          Length = 150

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT  TDYG+R L++ A+  +    I++IA +  IS+  L K++  L +AG+VET+RGR
Sbjct: 1   MHLTMFTDYGLRTLIFLALRPERQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA  I + +V++A E    +  C    +  C + G C L +V+ +A +AF  
Sbjct: 61  HGGMRLARPAANIGLGEVIRAMEPGLALVPCQEGGR--CAIGGCCDLQAVMNEARDAFLG 118

Query: 121 VLTQYSIECLV 131
           V  +Y++  +V
Sbjct: 119 VFDRYTLADVV 129


>gi|188580176|ref|YP_001923621.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343674|gb|ACB79086.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           populi BJ001]
          Length = 160

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G+++T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TE+   + ECF++    C +   C L   L +AL AF  
Sbjct: 61  GGGLRLAKPPGEIVVGAVVRETEDDLALVECFSAGS--CAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLV 131
           VL +Y++  L+
Sbjct: 119 VLDRYTLADLL 129


>gi|126729963|ref|ZP_01745775.1| rrf2 family protein [Sagittula stellata E-37]
 gi|126709343|gb|EBA08397.1| rrf2 family protein [Sagittula stellata E-37]
          Length = 161

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 71/121 (58%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +RVLMYCA H +      +IA+ C  SE  L +++  L + G + T RGR GG+ L RPA
Sbjct: 1   MRVLMYCAAHTERLVTKHEIAQVCNASENHLAQVINQLAQLGFLHTQRGRNGGLELARPA 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            +I I DV +  E+   +AECFA     CPL  +C L  +L KA N+F++ L   +++ L
Sbjct: 61  SEIVIGDVFRHLEQPVPLAECFADVDNTCPLTEACRLRDLLTKAANSFYETLDPITLDAL 120

Query: 131 V 131
           V
Sbjct: 121 V 121


>gi|83859025|ref|ZP_00952546.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852472|gb|EAP90325.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 152

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 78/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + LT  +++ +R+L + A+H     R   +A A  IS   L K +  L K G ++ VRGR
Sbjct: 6   LRLTNFSNFALRLLQFAALHAPNLIRTEDVARAHGISRHHLLKAVNTLEKEGFIKAVRGR 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA+ +T+ +V++ TE    + ECF +    CPL+G C L++ ++ A  AF  
Sbjct: 66  NGGITLNRPAEDVTVGEVIRITEAPLELVECFNAETNTCPLIGVCHLSASIQTATRAFLA 125

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL   +I  +  NRS +    N
Sbjct: 126 VLDDVTIADIAANRSVLLSRLN 147


>gi|332527665|ref|ZP_08403710.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332112067|gb|EGJ12043.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 155

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I +IA     SE  L K++  L   G++ TVRG+
Sbjct: 1   MKLTSFTDYSLRVLIYLATRPGRRATIGEIAAKFSASENHLTKVVHFLGTEGVLATVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP   I + D+V+ TE     AECF S    C +   C L  VL +A+ AF+ 
Sbjct: 61  GGGLGLARPPQDIVVGDIVRRTEGEAMPAECFGSGG-GCAIAPCCRLRGVLGEAVEAFYA 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++E LV NR  +  I 
Sbjct: 120 VLDRYTLEDLVANRDQLDAIL 140


>gi|261855536|ref|YP_003262819.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261836005|gb|ACX95772.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 150

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 4/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPN--RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L ++TD+ +R LM  A    N+ P    I +I+E   IS   + K++  LV+   VE 
Sbjct: 1   MQLNQQTDFALRALMLLAQEEKNNSPRLLTIREISEFHRISRNHMMKVINTLVEQNFVEA 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG+ GG++L RP+++I + DVV+A E ++ + ECF+  + +C L+ SC L  +  +ALN
Sbjct: 61  KRGQNGGLKLNRPSNEIRVGDVVRALENNWNLVECFSPERQNCQLLPSCQLKYLFHRALN 120

Query: 117 AFFDVLTQ 124
           AFF+ L Q
Sbjct: 121 AFFEELDQ 128


>gi|163850401|ref|YP_001638444.1| rrf2 family transcriptional regulator [Methylobacterium extorquens
           PA1]
 gi|218528961|ref|YP_002419777.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Methylobacterium chloromethanicum CM4]
 gi|240137477|ref|YP_002961948.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254559655|ref|YP_003066750.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|163662006|gb|ABY29373.1| transcriptional regulator, Rrf2 family [Methylobacterium extorquens
           PA1]
 gi|218521264|gb|ACK81849.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           chloromethanicum CM4]
 gi|240007445|gb|ACS38671.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254266933|emb|CAX22732.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           DM4]
          Length = 157

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G+++T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TE+   + ECF++    C +   C L   L +AL AF  
Sbjct: 61  GGGLRLAKPPAEIVVGAVVRETEDDLALVECFSAGS--CAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLV 131
           VL +Y++  L+
Sbjct: 119 VLDRYTLADLL 129


>gi|171915867|ref|ZP_02931337.1| HTH-type transcriptional regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 160

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 73/131 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +DY +RVLMY A        +S++ +A  +S   L KI+  L K G +   RGR
Sbjct: 1   MELSRFSDYSLRVLMYAAAREHEKVTLSELTQAYRVSHHHLVKIVHFLGKQGYLSNRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I + DV++ TE  F + ECF      C L  +C L  V R+A +AF D
Sbjct: 61  SGGIRLGRAPRDIKVGDVIRHTETHFNLVECFDPANDLCKLSPTCRLRGVFREARDAFLD 120

Query: 121 VLTQYSIECLV 131
           VL  Y++E LV
Sbjct: 121 VLDHYTLEDLV 131


>gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038392|gb|ABF65004.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
          Length = 154

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA++       S+IA  C ISE  L +++  L + G ++T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R A  I I DV +  E    + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGLALGRAAADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   S+E L  +   +++I +
Sbjct: 121 ALDGISLESLTCDNIDLQRILS 142


>gi|261378411|ref|ZP_05982984.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
 gi|269145183|gb|EEZ71601.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
          Length = 148

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAINDDMLVNIGTIAETYGISKSHLMKVVTSLVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDCINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAIKSFFT 118

Query: 121 VLTQYSIECLV 131
            L  ++++ L+
Sbjct: 119 YLDGFTLQDLL 129


>gi|299538188|ref|ZP_07051473.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298726390|gb|EFI66980.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 145

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y     D   + I +I++A  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +VL QY+++  + ++  +
Sbjct: 121 NVLDQYTLDDFLHSKEKL 138


>gi|255067242|ref|ZP_05319097.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
 gi|255048610|gb|EET44074.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
          Length = 154

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAEA  IS+  L K++  LVK G + ++RG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAINDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D+I +  VV+   E   V EC   +  +C +  SC LT +L  A+ AFF 
Sbjct: 61  GGGLRLADTPDKINVGAVVRHL-EPMQVVECMGENN-ECLITPSCRLTGILGGAIKAFFA 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 HLDGFTLQDLLN 130


>gi|110834981|ref|YP_693840.1| transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110648092|emb|CAL17568.1| Transcriptional regulator, putative [Alcanivorax borkumensis SK2]
          Length = 143

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y ++ H+  P  I +IA+A  IS   + K+ Q LV+ G V+++RG
Sbjct: 1   MQLTTHTDYALRTLIYLSLRHDKLPTTIQEIADAYHISNNHVAKVAQTLVQLGYVQSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ + +PA++I + ++++ T E+  + +CF +    CP+  +C L + L KA  AF 
Sbjct: 61  RSGGLVMAKPANEINVGELIRQT-ENLKLLDCFGTES-SCPIDPACKLKNALGKAQAAFL 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L QY++     N   ++
Sbjct: 119 QTLDQYNLADFTDNSDELR 137


>gi|24371645|ref|NP_715687.1| Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|24345407|gb|AAN53132.1|AE015456_2 Rrf2 family protein [Shewanella oneidensis MR-1]
          Length = 151

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RIS+I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRISEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  ++++ E S    +C   +   C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPAGEINLGQLIRSLENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QYS+  +V NR+ +
Sbjct: 118 LNVLDQYSLLDIVSNRNEL 136


>gi|154246969|ref|YP_001417927.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154161054|gb|ABS68270.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 149

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ +TDY +R LM+ A+  D  + I++IA A  IS+  L K+ Q L   G VE VRGR
Sbjct: 1   MRLSVQTDYALRTLMFLAV-KDGHHSIAEIAHAYGISKNHLMKVAQRLAAEGFVEGVRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RPA+ + +  +++  E++    ECF +    C +  +CGL   L  AL AF  
Sbjct: 60  SGGLKLARPANALNVGSIMRIMEDTGTFVECFDAATNSCVVTPACGLRHALAGALEAFAR 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L Q++I  LV +  S     +A
Sbjct: 120 HLDQFTIADLVPDSKSYGWQLDA 142


>gi|91790549|ref|YP_551501.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699774|gb|ABE46603.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 156

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 79/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I++IA A  +SE  L K++  L K G +  VRG+
Sbjct: 1   MKLTAFTDYSLRVLIYLAAQPQQRATIAEIATAFDVSENHLSKVVHCLGKNGWLANVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L  P + I +  VV+ TE    VAECF+     C +   C L  VL +A+ AF  
Sbjct: 61  GGGLELAMPPELIGVGAVVRQTEGVAVVAECFSDKGNHCSITRVCRLRGVLGEAVEAFHA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  LV+NR S+ ++ 
Sbjct: 121 VLDRYTLADLVQNRQSLARVL 141


>gi|172057713|ref|YP_001814173.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990234|gb|ACB61156.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 148

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDYG+RVL+Y  +H D    +  IA    IS   L K+ Q L K G VE+ RGR
Sbjct: 1   MRITQYTDYGLRVLIYLGLHRDEVTPMPAIANHYGISSNHLMKVTQQLTKLGYVESTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  ++I I  VV+   E   + ECFA+    C +   C L  +L +AL AF  
Sbjct: 61  TGGLRLIRDPEEINIGKVVREM-EPMDIVECFAADG-HCVIEPQCQLKGILARALRAFIR 118

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L Q+++  L++N   +  +F
Sbjct: 119 ELEQHTLAELLKNPYELNLLF 139


>gi|218768796|ref|YP_002343308.1| hypothetical protein NMA2048 [Neisseria meningitidis Z2491]
 gi|121052804|emb|CAM09151.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319411035|emb|CBY91435.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           WUE 2594]
          Length = 147

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLASPPERINIGAVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|260575577|ref|ZP_05843575.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259022220|gb|EEW25518.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 130

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+CA++     R   +A+AC  SE  L +++  L + G + TVRGR GG+ L RP D+IT
Sbjct: 1   MFCAVNPGKVVRKQDVAQACNASENHLAQVIHLLAQKGFLHTVRGRSGGLMLGRPVDEIT 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +V +A E +    ECF+ H+  CPL+ SC L   L KAL AF+  L   ++  +VR  
Sbjct: 61  VGEVFRAFEATLPFTECFSQHENSCPLIDSCRLKCALVKALAAFYATLDALTLRDMVREN 120

Query: 135 SSIKKIF 141
             ++ + 
Sbjct: 121 GDLEGLL 127


>gi|229917143|ref|YP_002885789.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
           AT1b]
 gi|229468572|gb|ACQ70344.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
           AT1b]
          Length = 146

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY +R LMY A  +     I ++A+   IS+  + K++  L K G +E+VRGR
Sbjct: 1   MRLTQTCDYALRTLMYSATFSHRLVTIQEVADQYNISKNHVMKVVYELGKHGYLESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RP D I + +VV+ T E F + ECF   +  C +  +C L  VL +A+ AF  
Sbjct: 61  GGGFRLARPMDDINVGEVVR-TMEPFELVECFGEGR--CVIAPACDLRGVLNEAMLAFLH 117

Query: 121 VLTQYSIECLVRNRSS 136
           VL +Y+I  LV NR++
Sbjct: 118 VLDRYTIADLVVNRTN 133


>gi|186475702|ref|YP_001857172.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
 gi|184192161|gb|ACC70126.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
          Length = 175

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 7/133 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+ ++    I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 11  MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGR 70

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKA 114
            GG+RL   +  +T+ +VV+ATE  F +  C        +H+ +C +   C L S+L  A
Sbjct: 71  NGGLRLYEHSSSLTVGEVVRATESDFALVSCLNVADASGAHR-ECVIQSHCRLKSILESA 129

Query: 115 LNAFFDVLTQYSI 127
            +AFF  L  Y+I
Sbjct: 130 RDAFFRELDNYTI 142


>gi|126728159|ref|ZP_01743975.1| Transcriptional regulator [Sagittula stellata E-37]
 gi|126711124|gb|EBA10174.1| Transcriptional regulator [Sagittula stellata E-37]
          Length = 171

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 76/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+   RVLM+CA +     R +QIA AC  S   + +++Q L   G + T RGR
Sbjct: 1   MRLTTRTNLAARVLMFCAANPGTQVRSAQIAAACNASANHVARVVQQLQSEGFLSTRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RP   I+I  V +  E     AECF      CPL G+C L   L +AL+AF+ 
Sbjct: 61  TGGLQLARPPSAISIGTVFRLFETEIPFAECFDPVANTCPLTGTCRLKRYLTRALDAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + +++ L +    + ++ 
Sbjct: 121 ELDRVTLDDLTQGNCGLDRLL 141


>gi|126739737|ref|ZP_01755428.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
 gi|126718969|gb|EBA15680.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
          Length = 149

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LM+CA ++D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMFCAANSDRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R   +I + D+ +  E +  + ECFA     CPL  +C L   L  A  AF+ 
Sbjct: 61  NGGMSLGRDPQEILMGDIFRHVEGNLPMVECFADADNSCPLTDACRLRVALSDAAQAFYS 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   +++ LV +   + ++ 
Sbjct: 121 SLDDITLDSLVCDNHDLMRLL 141


>gi|261401746|ref|ZP_05987871.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
 gi|313667825|ref|YP_004048109.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|269208119|gb|EEZ74574.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
 gi|309379076|emb|CBX22378.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005287|emb|CBN86720.1| transcriptional regulator [Neisseria lactamica 020-06]
          Length = 148

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I+ IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLASPPERINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 YLDGFTLQDLLN 130


>gi|254485469|ref|ZP_05098674.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
 gi|214042338|gb|EEB82976.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
          Length = 152

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 73/137 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T+Y +R L   AI      R+  +A+   +S   + KI+  L KAG +ETVRGR
Sbjct: 1   MKLTSYTNYAMRSLQLAAIKAPDLVRVDDVAKIHNLSRPHIMKIVHELGKAGYLETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R    I + DVV+ TE    V ECF   K  CPL+G C L+  +++A  AF  
Sbjct: 61  GGGFRLARDPADIIVGDVVRITEGPLDVVECFNPEKNTCPLIGICILSRKMQEATAAFMA 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   +I  +  NR  +
Sbjct: 121 VLDDLTIADITANRGQL 137


>gi|169829842|ref|YP_001700000.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
           C3-41]
 gi|168994330|gb|ACA41870.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
           C3-41]
          Length = 145

 Score = 94.0 bits (232), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y     D   + I +I+EA  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL +Y+++  + ++  +
Sbjct: 121 TVLDRYTLDDFLHSKEKL 138


>gi|59801857|ref|YP_208569.1| hypothetical protein NGO1519 [Neisseria gonorrhoeae FA 1090]
 gi|194099329|ref|YP_002002430.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
 gi|239999588|ref|ZP_04719512.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|240014762|ref|ZP_04721675.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI18]
 gi|240017211|ref|ZP_04723751.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA6140]
 gi|240081152|ref|ZP_04725695.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|240113364|ref|ZP_04727854.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|240116288|ref|ZP_04730350.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|240118576|ref|ZP_04732638.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|240121285|ref|ZP_04734247.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID24-1]
 gi|240124119|ref|ZP_04737075.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|240126265|ref|ZP_04739151.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|240128788|ref|ZP_04741449.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|254494301|ref|ZP_05107472.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
 gi|260439895|ref|ZP_05793711.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|268595398|ref|ZP_06129565.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|268597263|ref|ZP_06131430.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|268599439|ref|ZP_06133606.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|268601953|ref|ZP_06136120.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|268604283|ref|ZP_06138450.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|268682742|ref|ZP_06149604.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|268684848|ref|ZP_06151710.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|268687169|ref|ZP_06154031.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|291043171|ref|ZP_06568894.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|293398504|ref|ZP_06642682.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
 gi|59718752|gb|AAW90157.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934619|gb|ACF30443.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
 gi|226513341|gb|EEH62686.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
 gi|268548787|gb|EEZ44205.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|268551051|gb|EEZ46070.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|268583570|gb|EEZ48246.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|268586084|gb|EEZ50760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|268588414|gb|EEZ53090.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|268623026|gb|EEZ55426.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|268625132|gb|EEZ57532.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|268627453|gb|EEZ59853.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|291012777|gb|EFE04760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|291610975|gb|EFF40072.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
 gi|317164836|gb|ADV08377.1| hypothetical protein NGTW08_1415 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 147

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I+ IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPERINIGAVVRHLEPMQLV-ECMGPNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L  ++++ L+ N+ +   ++ +
Sbjct: 119 YLDGFTLQDLL-NKPTYDLLYES 140


>gi|110678148|ref|YP_681155.1| hypothetical protein RD1_0790 [Roseobacter denitrificans OCh 114]
 gi|109454264|gb|ABG30469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 156

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 73/137 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T++ +R L   A+ +    R+  +     ++   + KI+  L  AG V T RGR
Sbjct: 1   MKLTSYTNFALRSLQLAALKSPELIRVDDVVRVHGLARPHIVKIVHELGVAGYVVTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL +PA +I I DVV+ TE    + ECF   K  CPL+G C L+  L+KA  AF D
Sbjct: 61  NGGFRLGKPAKEIVIGDVVRLTEGPLDLVECFNPEKNTCPLIGICKLSRALQKATRAFMD 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   ++  +  NR  +
Sbjct: 121 VLDDLTLADIAANRDDL 137


>gi|322831162|ref|YP_004211189.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166363|gb|ADW72062.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 141

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +D    ISQ+ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDDQMTNISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG++L +PA+ I I DVV+  E    V  C +     C +  +C L  VL  A+  F 
Sbjct: 61  KNGGIKLGKPAETIRIGDVVRELEPLSLV-NCASDF---CHITPACRLKQVLHTAVEHFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L QY++  +V++ S++ K+ 
Sbjct: 117 DELNQYTLADMVKDNSTLYKLL 138


>gi|92118751|ref|YP_578480.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801645|gb|ABE64020.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           hamburgensis X14]
          Length = 142

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H+D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 1   MRLTSFFDYTLRLLMYAATHSDRLITIEETAGVYGISRTHLMKVANQLTRAGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+++   CP+  SC L + LR+AL AF  
Sbjct: 61  SGGLALAKRPNRIKLGDVLCATEPDFALVECFSANN-HCPISSSCRLRAPLREALAAFTA 119

Query: 121 VLTQYSIECLV 131
            L +Y++  L+
Sbjct: 120 TLDRYTLADLI 130


>gi|91774995|ref|YP_544751.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708982|gb|ABE48910.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
           flagellatus KT]
          Length = 149

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+RVLMY + H  + P  IS+IA    I    L K++  L K G ++T RG
Sbjct: 1   MQLTKFTDLGLRVLMYVSQHERNKPITISEIATQFNIPRNHLIKVVTFLNKTGWIQTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+RL      + +  V++  E S  +  C    +  CPL G CGL   L   LNAF+
Sbjct: 61  PNGGLRLGTDPASLHLGHVIRVLEGSASLVNC---QEPPCPLAGQCGLKHALDLGLNAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           D +  Y+++ ++RNR++
Sbjct: 118 DYMDTYTLQDVIRNRTA 134


>gi|126665836|ref|ZP_01736817.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
 gi|126629770|gb|EBA00387.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
          Length = 145

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A   D    I  +A+A  IS+  L K++  L   G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLVYLAACGDRLVTIQDVADAYDISKNHLMKVVHQLNLKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I I  +V+ TE    + ECF+++   C +   C L S+LR+AL AF  
Sbjct: 61  NGGMRLRRQPSSINIGALVRDTEPDLNLVECFSANN-QCCITPVCSLQSMLREALQAFLA 119

Query: 121 VLTQYSIECLVR 132
            L  Y++  +VR
Sbjct: 120 TLDTYTLADVVR 131


>gi|107028973|ref|YP_626068.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116689869|ref|YP_835492.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105898137|gb|ABF81095.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia AU 1054]
 gi|116647958|gb|ABK08599.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
          Length = 171

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+ +VV+ATE  F +  CF++  ++   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGVESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L ++++  L    S +  +  
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145


>gi|260429630|ref|ZP_05783607.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
 gi|260420253|gb|EEX13506.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
          Length = 150

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY +RV +Y   H D    IS+I  A  +S+  L K++Q LV+ G +++ RGR
Sbjct: 1   MHLSKFTDYALRVCLYLGAHQDRVVPISEITRAHGLSQSNLMKVVQQLVEGGFLKSTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPA +I + +V +  E    + +C       C L+G+CGL   L +A NAF+ 
Sbjct: 61  SGGVTLARPAAEIRVGEVARFMEGDSGLVDCST-----CILIGACGLVRGLNEAKNAFYQ 115

Query: 121 VLTQYSI 127
            L + S+
Sbjct: 116 SLDRSSL 122


>gi|254671066|emb|CBA07956.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 145

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+ G
Sbjct: 1   MTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGKGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+RL  P D+I I  VV+  E    V EC   +  +C +  SC LT +L  A+ +FF  L
Sbjct: 61  GLRLAAPPDRINIGSVVRHLEPMQLV-ECMGENN-ECLITPSCRLTGILGGAMKSFFTYL 118

Query: 123 TQYSIECLVR 132
             ++++ L+ 
Sbjct: 119 DGFTLQDLLN 128


>gi|220934620|ref|YP_002513519.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995930|gb|ACL72532.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 143

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y A++ D  +RI+ IAEA  IS   L K++  L   G + T RG+
Sbjct: 1   MQLTRHTDYALRVLIYLAVNPDRLSRITDIAEAYDISRHHLVKVVHELAGHGHILTYRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I I DVV+  EE+  +  C A     C ++  C L  VL  A +AF  
Sbjct: 61  HGGMRLARPPAEIRIGDVVRDMEENLEIINCSAPM---CIILPDCRLKGVLNDARDAFMA 117

Query: 121 VLTQYSIECLV 131
            L + ++  LV
Sbjct: 118 TLDRVTLAELV 128


>gi|83954868|ref|ZP_00963546.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
 gi|83840594|gb|EAP79766.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
          Length = 156

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 72/137 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T++ +R L   A+      R+  +     ++   + KI+  L +AG V T RGR
Sbjct: 1   MKLTSYTNFALRSLQLAALKEPDLIRVDDVVRVHGLARPHIVKIVHELGRAGYVATQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA+ I I DVV+ TE    + ECF   +  CPL+G C L+  L++A  AF  
Sbjct: 61  NGGFRLARPAEDIVIGDVVRLTEGPLDLVECFNPERNTCPLIGICKLSRALQEATGAFMA 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   ++  +  NR  +
Sbjct: 121 VLDNLTLSDIASNRGDL 137


>gi|254450707|ref|ZP_05064144.1| rhizobial iron transcriptional regulator protein [Octadecabacter
           antarcticus 238]
 gi|198265113|gb|EDY89383.1| rhizobial iron transcriptional regulator protein [Octadecabacter
           antarcticus 238]
          Length = 143

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL K +DY +R+L+  ++        S IA++  +S+  + K+   LV+ G V + RGR
Sbjct: 1   MHLDKFSDYAVRILIALSVSKAGRVPASSIAQSYGLSQHHIAKVATELVRGGFVTSDRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RPA  I+I  V+++      VAECF S   +C ++ +CGL + L +A +AFF 
Sbjct: 61  GGGLQLARPATDISIGAVLRSIMADDPVAECFGSAP-NCAILPACGLRTPLTQAKDAFFS 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL  Y+++ + + +S++  + +A
Sbjct: 120 VLDGYTLDDVTQRKSALADLLSA 142


>gi|170729199|ref|YP_001763225.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814546|gb|ACA89130.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC
           51908]
          Length = 152

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L K G +ETVR
Sbjct: 1   MQLTRYTDFGIRTLMYLALQPERETLFRIAEITEVFELSPNHVSKIVHHLGKLGYLETVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL  PA +I I  +V+  E S    +C   +K  C    +C L  VL +A++A+
Sbjct: 61  GKSGGFRLGMPASEINIGQLVRVLENSLAPIDC---NKPYCLFTPACKLRGVLAEAVSAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL ++S+E +V NR  + K+ 
Sbjct: 118 LAVLDKHSLEDVVSNRQQLLKLL 140


>gi|331694605|ref|YP_004330844.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949294|gb|AEA22991.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 148

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T   DY +RVL+Y  +       +  IA A  IS   L K++  L  AG+VET RGR
Sbjct: 1   MRHTNHADYALRVLLYLRVAPGRRGSVGDIATAHHISRHHLDKVVTGLAAAGLVETARGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+ ++++A E  + V EC    +  C + G CG  +V  +AL+A+F 
Sbjct: 61  GGGVRLVRDPASITLGEIMRAMENDYAVVECLGPARF-CRVAGVCGARNVFSRALDAYFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL   ++E +  N   ++    
Sbjct: 120 VLDDATLEEIADNDLGLRGALG 141


>gi|298370162|ref|ZP_06981478.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281622|gb|EFI23111.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 150

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAETYNISKSHLMKVVTALVKGGFLTSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L  P ++I I  VV+  E    V EC      +C +  SC L  +L   + AF +
Sbjct: 61  GGGLKLAEPPEKINIGSVVRHLEPMQLV-ECMGRDN-NCLITPSCRLADILSGGIKAFLN 118

Query: 121 VLTQYSIECLVR 132
            L  +++  L+ 
Sbjct: 119 YLDGFTLSDLLN 130


>gi|126650509|ref|ZP_01722732.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
 gi|126592665|gb|EAZ86664.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
          Length = 145

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y     D   + I +I++A  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL +Y+++  + ++  +
Sbjct: 121 TVLDRYTLDDFLHSKEKL 138


>gi|89900652|ref|YP_523123.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345389|gb|ABD69592.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 154

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY   H +    IS++A A  ISE  L KI   L  AG +ETVRG+
Sbjct: 1   MRLTTMSDYAMRLLMYVGQHPERLCTISEVARAYEISEAHLTKITHQLALAGWLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL      I +  VV++ E  F + EC  S    C L  SC LT ++  AL +F  
Sbjct: 61  GGGMRLAAAPQDIGLGAVVRSMEPDFTIVECLTS-DTTCQLTSSCHLTGIINGALQSFMQ 119

Query: 121 VLTQYSIECLV 131
            L +Y++  L+
Sbjct: 120 YLDRYTLADLL 130


>gi|187923802|ref|YP_001895444.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Burkholderia phytofirmans PsJN]
 gi|187714996|gb|ACD16220.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           phytofirmans PsJN]
          Length = 166

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 3/130 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+     + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGGGLSTIQDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL    + +T+ ++V+ATE  F +  CF     +   C +   C L   L  A NA
Sbjct: 61  NGGLRLAEQTNALTVGEIVRATESDFALVGCFPDQHGERRGCVITAQCRLRGALEAARNA 120

Query: 118 FFDVLTQYSI 127
           F   L +++I
Sbjct: 121 FLTELDRHTI 130


>gi|114565174|ref|YP_752688.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336467|gb|ABI73849.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           frigidimarina NCIMB 400]
          Length = 151

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR+LMY A+ ++  N  RI+++     +S   + KI+  L K G ++TVR
Sbjct: 1   MQLTRYTDFGIRILMYLAVQSERENLFRIAEVTSVFDLSSNHVAKIIHQLGKMGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL + AD++ I  +V+  E S    +C + +   C     C L  VL +A+ A+
Sbjct: 61  GKSGGFRLAKAADEVLIGQLVRDLEHSLSPIDCESPY---CRFTPICRLKGVLGQAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL QY++  +V N+S I
Sbjct: 118 LAVLDQYTLADIVSNKSDI 136


>gi|238022039|ref|ZP_04602465.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
 gi|237866653|gb|EEP67695.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
          Length = 152

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL+Y A+++     I  IAE   IS+  L K++  LVK G + ++RG+
Sbjct: 1   MYLTQQTDYALRVLIYAAVNDQSLVNIGTIAETYNISKSHLMKVVTALVKGGFLTSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +P ++I +  VV+ TE    +AECF  +   C +  +C L+ +L   L AF +
Sbjct: 61  GGGLKLAQPPEKIRVGTVVRVTEP-LQLAECFGDNN-QCLITPTCRLSQILNSGLIAFIN 118

Query: 121 VLTQYSIECLVR 132
            L  Y++  LV 
Sbjct: 119 HLDGYTLADLVN 130


>gi|127514738|ref|YP_001095935.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
           PV-4]
 gi|126640033|gb|ABO25676.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
           PV-4]
          Length = 150

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L K G ++TVR
Sbjct: 1   MQLTRYTDFGIRTLMYLALSPERETLFRIAEITEVFDLSANHVSKIVHHLGKEGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PADQI I  +V+  E S    +C   +   C    +C L  VL +A++A+
Sbjct: 61  GKAGGFKLGKPADQINIGVLVRTLENSLSPIDCSKPY---CRFSPACQLKGVLAEAVDAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL +YS+  +V NR  ++ + 
Sbjct: 118 LAVLDKYSLADVVSNRDELRALL 140


>gi|170692319|ref|ZP_02883482.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
 gi|170142749|gb|EDT10914.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
          Length = 169

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y AI  +  + I  I++A  +S+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAIRGEGLSTIQDISDAYGVSKNHLMKVVQQLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL     ++T+ ++V+ATE  F +  C      +   C +   C L +VL  A NA
Sbjct: 61  NGGLRLAERTRKLTVGEIVRATESDFALVACLPDQNGERRPCVITPQCRLRNVLEAARNA 120

Query: 118 FFDVLTQYSIE 128
           F   L +++I+
Sbjct: 121 FLAELDRHTID 131


>gi|120600824|ref|YP_965398.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291147|ref|YP_001181571.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560917|gb|ABM26844.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
           W3-18-1]
 gi|145562837|gb|ABP73772.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens CN-32]
 gi|319428504|gb|ADV56578.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens 200]
          Length = 151

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S    +C   +   C    +C L  VL  A++A+
Sbjct: 61  GKMGGFRLGKPACEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAHAVDAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QYS++ +V NR  +
Sbjct: 118 LNVLDQYSLQDIVSNRDEL 136


>gi|260576973|ref|ZP_05844954.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259020815|gb|EEW24130.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 157

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +T+   RVLM CA++     R ++IA AC  S   L  ++  L   G +ETVRGR
Sbjct: 1   MRLTTKTNLAARVLMACAVNEGVTLRTAEIARACNASLNHLLLVVNALHTNGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP  Q+++ +V +  E     AECF      CPL  +C L S + +A+ AF+ 
Sbjct: 61  SGGLHLTRPPAQVSMGEVFRTFESGTPFAECFDPDTNTCPLSTTCRLRSYVARAVEAFYH 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            +   ++E LV+    +  + 
Sbjct: 121 EMDMVTLEDLVKGNCGLSGLL 141


>gi|217968854|ref|YP_002354088.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217506181|gb|ACK53192.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 163

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +R+LMY     +    I ++AE   IS   L K++  LV  G V+  RG+
Sbjct: 1   MNITQHTDYALRLLMYLGTCTERRVTIKEVAERFDISRSHLMKVVTGLVAKGFVDGARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A QI + DVV+  E SF + ECF S    C L  +C L   L  AL AFF 
Sbjct: 61  GGGLRLARAATQIGLGDVVRGMEPSFELVECFGSGS-HCLLDPACRLKGALAGALQAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + ++  L+ +   +  +  
Sbjct: 120 ALDRLTLADLIGDDGQLHAVLG 141


>gi|126176517|ref|YP_001052666.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS155]
 gi|152998594|ref|YP_001364275.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS185]
 gi|160873169|ref|YP_001552485.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS195]
 gi|217971259|ref|YP_002356010.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS223]
 gi|304412444|ref|ZP_07394051.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|307305788|ref|ZP_07585534.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
 gi|125999722|gb|ABN63797.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS155]
 gi|151363212|gb|ABS06212.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS185]
 gi|160858691|gb|ABX47225.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS195]
 gi|217496394|gb|ACK44587.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS223]
 gi|304349279|gb|EFM13690.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|306911281|gb|EFN41707.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
 gi|315265394|gb|ADT92247.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS678]
          Length = 151

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S    +C   +   C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL QY++  +V NR  +
Sbjct: 118 LNVLDQYTLLDIVSNRDEL 136


>gi|261365670|ref|ZP_05978553.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
 gi|288565837|gb|EFC87397.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
          Length = 154

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I  IAEA  IS+  L K++  LVK G + + RG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAVNDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D+I +  VV+   E   + EC   +  +C +  SC L  +L  A+ AFF 
Sbjct: 61  GGGLRLADTPDKINVGAVVRHL-EPMQIVECMGENN-ECLITPSCRLAGILGGAIKAFFA 118

Query: 121 VLTQYSIECLVR 132
            L  ++++ L+ 
Sbjct: 119 HLDGFTLQDLLN 130


>gi|254492393|ref|ZP_05105565.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
           DMS010]
 gi|224462285|gb|EEF78562.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
           DMS010]
          Length = 143

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY +R+L+Y AIH  D P  +   AE   +S   L K+ Q LV+  +V + RG
Sbjct: 1   MQLTTHSDYALRLLIYLAIHPGDKPATVKDAAERYGVSTNHLAKVAQRLVQEKLVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L    + I I  +++ TE +  + ECF      CP+   C L S LRKA  AFF
Sbjct: 61  RGGGLKLATTPESINIGQLIRKTE-NLELLECFGD-DCACPIESVCILFSALRKAQKAFF 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DVL  Y++  +V+N+  + +  N
Sbjct: 119 DVLDGYTLADVVKNKHRLMQSLN 141


>gi|170733208|ref|YP_001765155.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|254248038|ref|ZP_04941359.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
 gi|124872814|gb|EAY64530.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
 gi|169816450|gb|ACA91033.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
          Length = 171

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+ +VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L ++++  L    S +  +  
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145


>gi|119773198|ref|YP_925938.1| Rrf2 family protein [Shewanella amazonensis SB2B]
 gi|119765698|gb|ABL98268.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
           SB2B]
          Length = 151

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L KAG ++TVR
Sbjct: 1   MQLTRYTDFGIRTLMYMAVQPERTALFRIAEITEVFDLSPNHVSKIIHHLGKAGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S     C    K  C L+ +C L  VL  A+ A+
Sbjct: 61  GKAGGFRLAKPAAEINLGALVRELEHSLAPINC---SKPVCRLLPACQLKGVLANAVQAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL QY +  +V NR  +
Sbjct: 118 LAVLDQYQLADIVTNRDEL 136


>gi|295676448|ref|YP_003604972.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
 gi|295436291|gb|ADG15461.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
          Length = 176

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  D  + I  I+EA  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYALRVLLYLAVRGDGLSTIQDISEAYGISKNHLMKVVQQLGEFGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ DVV+ TE  F +  C       +  C +   C L   L+ A  A
Sbjct: 61  NGGLRLSAQSLSLTVGDVVRVTESDFALVGCLPDRQGQQRPCVITSQCRLRGALQAANLA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
           F   L +++I  + + +S +  +   G
Sbjct: 121 FLAELDRFTIGDVAQPKSPLAALLGLG 147


>gi|299531825|ref|ZP_07045227.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
 gi|298720266|gb|EFI61221.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
          Length = 153

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A   +    IS++A+A  ISE  L K+   L   G +ETVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   QI I  V++  E  F + ECF +    C L G C L  +L+ AL++F  
Sbjct: 61  GGGMRLAREPKQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMA 119

Query: 121 VLTQYSIECLV 131
            L  +++  L+
Sbjct: 120 HLDGFTLADLI 130


>gi|88800419|ref|ZP_01115984.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
 gi|88776866|gb|EAR08076.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
          Length = 155

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +RVL+Y  +  ++P RI  +AE+  IS+  L K++Q L   G V+  RGR
Sbjct: 1   MNITRFTDYALRVLVYLNVDTEHPARIQDVAESYDISKNHLMKVVQVLNAQGYVKATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I ++V+  EE   + ECF +    C +  +C +  +   A+  FF 
Sbjct: 61  NGGIALSRPASEINIGELVRYFEEGSKLVECFGADN-QCVITPACQIKQMFTGAMEQFFC 119

Query: 121 VLTQYSI 127
            L Q+++
Sbjct: 120 HLDQFTL 126


>gi|327440415|dbj|BAK16780.1| predicted transcriptional regulator [Solibacillus silvestris
           StLB046]
          Length = 153

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDY +R LMY  +   +    I +IA+A  IS+  L K+   L K G +ET+RG
Sbjct: 5   VRLTVYTDYSLRTLMYLGVRGRENLVTIQEIADAYQISKNHLMKVTHDLGKIGYIETIRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    +QI I +VV+ TE+ F + ECF      C +   C L   L++AL A+ 
Sbjct: 65  RGGGIRLAVEPEQINIGEVVRKTEDDFHLVECFNPEGNLCKISPECRLKFALQEALKAYL 124

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  ++ ++  + ++F
Sbjct: 125 AVLDTYTLADVLVSKDILSELF 146


>gi|221066727|ref|ZP_03542832.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|220711750|gb|EED67118.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
          Length = 154

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A   +    IS+I++A  ISE  + K+   L + G ++TVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVAQRPERLCTISEISQAYGISEAHMMKVTHQLAQQGWIKTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     QI +  VV+  E  F + ECF +    C L G C LT +L+ AL++F  
Sbjct: 61  GGGMRLAHEPQQINLGAVVRGMEPDFALVECFTNDN-RCMLAGDCRLTGLLQGALHSFMA 119

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L  +++  L+  ++S  ++
Sbjct: 120 HLDGFTLATLLIPQASANEL 139


>gi|40063649|gb|AAR38438.1| rrf2 family protein [uncultured marine bacterium 582]
          Length = 147

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 75/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+K TDY +R+LM+ A+ + +     QIAE        L K+ Q LV+ G V +VRGR
Sbjct: 1   MQLSKFTDYALRILMHLAVADKHMLTTRQIAEIHDAKYNHLAKVTQWLVRKGYVASVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + + +  VV+  E    + +C       C L  SCGLTS LR A  AFF 
Sbjct: 61  SGGLRLAKETNDVNVGLVVRDLEGQSELVDCLRPSGGSCILAPSCGLTSALRAAQEAFFQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++  L +N + I ++ 
Sbjct: 121 SLDTLTLADLTKNDAPISRLL 141


>gi|206560284|ref|YP_002231048.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198036325|emb|CAR52221.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 172

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+  VV+ATE  F +  CF+   S    C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGQVVRATENDFALVGCFSPDDSESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L    S +  +  
Sbjct: 121 FFAELDRHTIGELAEPASPLVALLG 145


>gi|134295879|ref|YP_001119614.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134139036|gb|ABO54779.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 171

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  +S+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYALRVMLYLAVRGDGLATIQEISDAYGVSKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++TI  VV+ATE  F +  CFA    +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPASLKLTIGQVVRATENDFALVGCFAPDGGESRGCVIQPQCQLKGVLAAARDA 120

Query: 118 FFDVLTQYSI 127
           FF  L +++I
Sbjct: 121 FFAELDRHTI 130


>gi|323526163|ref|YP_004228316.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1001]
 gi|323383165|gb|ADX55256.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1001]
          Length = 166

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I+EA  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISEAYGISKNHLMKVVQRLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ ++V+ATE  F +  C       +  C +   C L +VL  A +A
Sbjct: 61  NGGLRLAERSRTLTVGEIVRATENDFALVACLPDQDGQRRPCVITPQCRLRNVLEAARHA 120

Query: 118 FFDVLTQYSIE 128
           F   L +++IE
Sbjct: 121 FLAELDRHTIE 131


>gi|51594783|ref|YP_068974.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis IP
           32953]
 gi|150260577|ref|ZP_01917305.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
 gi|153947883|ref|YP_001402601.1| NsrR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|161484881|ref|NP_667973.2| transcriptional repressor NsrR [Yersinia pestis KIM 10]
 gi|161511445|ref|NP_991928.2| transcriptional repressor NsrR [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162100152|ref|YP_653811.2| transcriptional repressor NsrR [Yersinia pestis Antiqua]
 gi|162139427|ref|YP_649219.2| transcriptional repressor NsrR [Yersinia pestis Nepal516]
 gi|167470114|ref|ZP_02334818.1| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1]
 gi|218927582|ref|YP_002345457.1| transcriptional repressor NsrR [Yersinia pestis CO92]
 gi|229836639|ref|ZP_04456805.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
 gi|229840251|ref|ZP_04460410.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842329|ref|ZP_04462484.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903932|ref|ZP_04519045.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
 gi|270489081|ref|ZP_06206155.1| Rrf2 family protein [Yersinia pestis KIM D27]
 gi|81640568|sp|Q66FA9|NSRR_YERPS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372265|sp|Q1C106|NSRR_YERPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372266|sp|Q0WJT1|NSRR_YERPE RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372267|sp|Q1CEG1|NSRR_YERPN RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030892|sp|A7FMX3|NSRR_YERP3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|51588065|emb|CAH19671.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|115346193|emb|CAL19061.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149289985|gb|EDM40062.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
 gi|152959378|gb|ABS46839.1| nitrite-sensitive repressor NsrR [Yersinia pseudotuberculosis IP
           31758]
 gi|229679702|gb|EEO75805.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690639|gb|EEO82693.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696617|gb|EEO86664.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706323|gb|EEO92331.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
 gi|270337585|gb|EFA48362.1| Rrf2 family protein [Yersinia pestis KIM D27]
 gi|320013755|gb|ADV97326.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 141

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ S + K+ 
Sbjct: 117 KELDNYTLADMVKDNSPLYKLL 138


>gi|254515045|ref|ZP_05127106.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
 gi|219677288|gb|EED33653.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
          Length = 137

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 73/128 (57%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+LM+CAIH     RI  +A A  IS+  L K  + L + G + T RGR GG++L    
Sbjct: 1   MRILMHCAIHPGRIVRIQDVATAFGISKAHLLKSARHLGQLGYLSTSRGRNGGIQLGMAP 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           ++I +  V++  E+S    ECF SH   CP+VG C LT + RK L AF+  L   S+  +
Sbjct: 61  ERIFVGKVIRELEDSGDFVECFNSHTNTCPIVGPCKLTGLFRKGLEAFYKELDDVSLADI 120

Query: 131 VRNRSSIK 138
           V +  +++
Sbjct: 121 VGDGRALR 128


>gi|163797341|ref|ZP_02191294.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
 gi|159177432|gb|EDP61988.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
          Length = 158

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +R L+  A++      I +IA    IS+  L K++  L +  I+ + RG+
Sbjct: 1   MQLSQFTDYALRTLILVALNGSRRTTIDEIATRYGISKEHLRKVVHLLSRLSILHSTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL  PA  I I D+V+ATE  F +AEC  A     CP+ G C L+ +LR A  AF 
Sbjct: 61  GGGLRLNIPAKAIRIGDIVRATEGGFAMAECLRADRAGHCPIDGVCRLSGILRGATAAFL 120

Query: 120 DVLTQYSIECLVRNRSSI 137
             L ++++  L+ +R S+
Sbjct: 121 TELDRHTLADLIADRDSL 138


>gi|296114961|ref|ZP_06833606.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978479|gb|EFG85212.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 164

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +    I ++A+A  +SE  + K++  L +AG++ TVRGR
Sbjct: 1   MRLTLHTDYALRVLLYVALRPETRVSIREVAQANRVSETHMVKVVHKLGRAGLIRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG+ L + A+ I I  VV+ TEE   +  C    +   DC L G C    VL  AL+AF
Sbjct: 61  GGGIELGQAAEDIRIGAVVRLTEEERQLVSCMRPKAEAEDCVLSGFCQFYFVLGTALDAF 120

Query: 119 FDVLTQYSI 127
            +VL ++++
Sbjct: 121 MEVLDRWTL 129


>gi|258512207|ref|YP_003185641.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478933|gb|ACV59252.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 140

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT  TDY +RVL+Y A   D    ++ +IA    IS   L K +  L + G +ETVRG
Sbjct: 1   MNLTLFTDYALRVLIYTANQPDGRLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL  P + I I DVV+A E+ F V  CFA+    C L+  C L   L +A++AF 
Sbjct: 61  RGGGMRLAMPPNDIRIGDVVRAMEDDFAVVGCFANDS--CVLLPGCKLRRALGEAVDAFL 118

Query: 120 DVLTQYSI 127
           + L QY++
Sbjct: 119 ETLNQYTL 126


>gi|307292739|ref|ZP_07572585.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306880805|gb|EFN12021.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 150

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 79/134 (58%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++  +       I +IA+A  +S   L K++  L + G+++T RGR
Sbjct: 1   MQLTRHTDYALRVLIHLTVAPSGRATIPEIADAYSLSRNHLMKVVHHLGQGGLLDTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP + I+I +VV+ +E    +A+C +     C L  +CGL+++L+ A  AF  
Sbjct: 61  GGGFTLARPPEAISIGEVVRHSEPDMNMADCGS-----CALRTACGLSAILKAATAAFLA 115

Query: 121 VLTQYSIECLVRNR 134
           VL ++S+    R++
Sbjct: 116 VLDRHSLADAARDK 129


>gi|163749814|ref|ZP_02157059.1| Rrf2 family protein [Shewanella benthica KT99]
 gi|161330328|gb|EDQ01307.1| Rrf2 family protein [Shewanella benthica KT99]
          Length = 152

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYGIR LMY AI  +     RIS+I +   +S   + KI+  L K G ++T+R
Sbjct: 1   MQLTRYTDYGIRTLMYLAIQPERETLFRISEITQVFDLSPNHVSKIVHHLGKLGYLKTIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +   +I I  +V+  E S    +C   +   C L  SC L  VL +A+ A+
Sbjct: 61  GKSGGFRLGKSPKEINIGQLVRVLENSLTPIDCSKPY---CRLTPSCQLWGVLAEAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QYS+  +V N   + K+ 
Sbjct: 118 LTVLDQYSLADIVSNNHELVKLL 140


>gi|237750663|ref|ZP_04581143.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
 gi|229373753|gb|EEO24144.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
          Length = 139

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+K +DY  R L+Y A H++  N I  +A    IS+  L KI+  L K   ++T RGR
Sbjct: 1   MQLSKFSDYSFRALIYLAQHDNTLNTIENMASELRISQNHLKKIIHKLSKGQFIKTFRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAF 118
            GG++L +    I + DV+  TE +    EC    S   +CP   +C L S++ KA NAF
Sbjct: 61  EGGIKLAKKPKDIGLADVLLYTEINTDFVECLKHNSKHTECPYQINCNLKSIIHKAKNAF 120

Query: 119 FDVLTQYSIECLVR 132
                +YS++ L++
Sbjct: 121 MQEFQKYSLQDLLQ 134


>gi|167836361|ref|ZP_02463244.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 165

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+ +VV+ TE  F +  CFA    SH+ +C +   C L  V   A  
Sbjct: 61  NGGLRLNAQSATLTVGEVVRKTENDFALVGCFAGEAESHR-NCVIQSVCRLKGVFVAARE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145


>gi|114331398|ref|YP_747620.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
           eutropha C91]
 gi|114308412|gb|ABI59655.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
           C91]
          Length = 154

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y  +  +  + I++I++   IS   + KI+  L + G +ET+RG+
Sbjct: 1   MKLTNYSDYALRILIYLGLKREKLSTITEISDCYRISRNHVVKIVHHLGQLGYLETLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  + I I +V++ TE S  + ECF+     C +  SC L S++ +AL AF  
Sbjct: 61  HGGIRLARAPEMINIGEVMRHTETSMDLVECFSDQNA-CIICDSCVLRSIIAEALAAFMT 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL  Y++  L+  +  +KK
Sbjct: 120 VLDSYTLADLMVPKRQLKK 138


>gi|226226792|ref|YP_002760898.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226089983|dbj|BAH38428.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 152

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 71/127 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +D  +R LM   +  D    +  IA    +S   L KI+Q L + G VETVRGR
Sbjct: 1   MRLTRFSDNALRCLMVLGLEPDALIPVHSIAVRMNMSHEHLVKIVQRLAELGYVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+  +V+ TE++  + ECF      CP+  +C L  +L +AL+AF  
Sbjct: 61  NGGVRLVRSPQHITLGALVRETEDNLALVECFEPESNTCPIAPACVLARMLDEALSAFLA 120

Query: 121 VLTQYSI 127
           VL  Y++
Sbjct: 121 VLDGYTL 127


>gi|209519545|ref|ZP_03268338.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
 gi|209500024|gb|EEA00087.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
          Length = 176

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYALRVLLYLAVRGEGLSTIHDISQAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ DVV+ATE  F +  C    +     C +   C L   L+ A  A
Sbjct: 61  NGGLRLGAQSPALTVGDVVRATESDFALVGCLPDRQGVQRHCVITTQCRLRGALQAANQA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
           F   L +++I  + +  S +  +   G
Sbjct: 121 FLAELDRHTIGEVAQPHSPLAALLGLG 147


>gi|56962129|ref|YP_173852.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|81367334|sp|Q5WL64|NSRR_BACSK RecName: Full=HTH-type transcriptional regulator nsrR
 gi|56908364|dbj|BAD62891.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 149

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R+L+Y A+   +  + + Q+A+   IS   L K+   L K G++ET++G
Sbjct: 1   MQLTSYTDYSLRLLLYLALQPKHKLSSVKQVADIYRISYNHLTKVTHELGKLGLIETIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I +VVK TE++  + ECF      C L  +C L  VL +AL A+ 
Sbjct: 61  RNGGIRLAKEPEEINIGEVVKQTEDNLELVECFNRETNTCILNPACRLKGVLHEALAAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY+++ LV N   ++ + 
Sbjct: 121 QVLEQYTVKDLVLNEDDLRALL 142


>gi|256823249|ref|YP_003147212.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796788|gb|ACV27444.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
           DSM 16069]
          Length = 148

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL++ A+  D  + I +I+++  IS   L K++  L K G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLLFLALEKDRLSTIQEISDSYNISSNHLMKVVHALNKKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  +V+  E    + ECF+     C +   CGL +VL +AL  F  
Sbjct: 61  NGGMRLRMDPEDIRIGVLVREMEPDMSLVECFSPDN-KCVITPVCGLKAVLGEALKNFLA 119

Query: 121 VLTQYSI 127
            L +Y++
Sbjct: 120 TLDKYTL 126


>gi|254476056|ref|ZP_05089442.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030299|gb|EEB71134.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 137

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 71/129 (55%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA ++D     S+IAE C ISE  L +++  L + G + T RGR GG+ L RPA +I 
Sbjct: 1   MYCAANSDRLVTKSEIAERCNISENHLAQVINQLAQLGYLRTQRGRNGGMSLGRPAGKIG 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I DV +  E +  + ECFA     CPLV +C L   L  A  AF+  L   ++E LV + 
Sbjct: 61  IGDVFRDVEGTVPMVECFADADNTCPLVSACRLRVALADAAQAFYRSLDGITLEALVCDN 120

Query: 135 SSIKKIFNA 143
             +  +F A
Sbjct: 121 DELFALFQA 129


>gi|167587014|ref|ZP_02379402.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           ubonensis Bu]
          Length = 165

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL   + ++T+  VV+ TE  F +  CFA  +    C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPHSTRLTVGQVVRETENDFALVGCFAGGESQRACVIEPHCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  L +  S +  +  
Sbjct: 121 FAELDRHTLGELAQPASPLAALLG 144


>gi|85707148|ref|ZP_01038235.1| rrf2 family protein [Roseovarius sp. 217]
 gi|85668307|gb|EAQ23181.1| rrf2 family protein [Roseovarius sp. 217]
          Length = 100

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 63/100 (63%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IR+LM+CA +ND     ++IAE C  SE  L +I+  L + G + T RGR
Sbjct: 1   MRITKRTNIAIRLLMFCASNNDRLVTKAEIAERCNTSESHLAQIINRLSQLGFLYTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            GGVRL RP  +IT+ DV +  E++  VAECFA     CP
Sbjct: 61  TGGVRLGRPMTEITVGDVFRQLEQNTPVAECFADVDNTCP 100


>gi|331699002|ref|YP_004335241.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953691|gb|AEA27388.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 148

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+  D+ +RVLM+  +       I  IA A  +S   L K+++ +  AG+VET RGR
Sbjct: 1   MRHTQHADFALRVLMFLRVAPGRRGSIGDIALAHRVSRNHLDKVVRRMSTAGLVETSRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+ DV+++ E+ F V EC    +  C + G CG  +V   AL+++F 
Sbjct: 61  GGGVRLVRDPASITVGDVIRSMEDDFAVVECLGPARY-CRVAGVCGARTVFAAALDSYFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL + +++ +  N   ++    
Sbjct: 120 VLDRATLDDVAANDGGLRGALG 141


>gi|78066618|ref|YP_369387.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77967363|gb|ABB08743.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 171

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118
            GG+RL   + Q+T+  VV+ATE  F +  CF++      C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPESLQLTVGQVVRATESDFALVGCFSAEGESRGCVIEPQCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  LV   + +  +  
Sbjct: 121 FAELDRHTLGELVEPAAPLVALLG 144


>gi|110347078|ref|YP_665896.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283189|gb|ABG61249.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 153

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY A   D    I + A A  +S+  L K+   L + G ++ VRGR
Sbjct: 1   MRLTSFSDYALRMLMYAATAGDRLITIEEAARAFSVSKTHLNKVANTLTRGGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  + I I DV++ TE  F + ECFA+    C L  SC L+ +L +A+ +F +
Sbjct: 61  SGGLMLDRRPETIRIGDVIRMTEPDFALVECFATGN-QCILTNSCKLSGMLGEAMASFHE 119

Query: 121 VLTQYSI 127
            L +Y++
Sbjct: 120 TLDRYTL 126


>gi|296157751|ref|ZP_06840585.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
 gi|295891997|gb|EFG71781.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
          Length = 166

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIRDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  CF   + +   C +   C L   L  A +A
Sbjct: 61  NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I  + +    +  +  
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145


>gi|171058160|ref|YP_001790509.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
           SP-6]
 gi|170775605|gb|ACB33744.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
           SP-6]
          Length = 165

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LMY     +    I+++A+A  ISE  L KI   L  AG +ETVRG+
Sbjct: 1   MRLTTMTDYALRLLMYVGQRPERLCTIAEVAQAYGISEAHLMKITHQLGLAGWIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     QI + ++V++ E  F + EC AS    C L G C LT +   AL AF +
Sbjct: 61  GGGMRLALEPAQINLGELVRSVEPDFALVECLASGNA-CSLTGRCRLTGIFDDALAAFME 119

Query: 121 VL 122
            L
Sbjct: 120 KL 121


>gi|114319388|ref|YP_741071.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225782|gb|ABI55581.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 162

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY  RVL+Y          I  IA+   IS   L K++  L   G +ETVRG+
Sbjct: 1   MRLTVYSDYAFRVLVYLGTRPGERATIRGIADCYGISRNHLTKVVHQLGSQGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL R  + I + +V++ TEE F + EC   S +  C + G C L  VL +A  AF 
Sbjct: 61  GGGLRLTRDPEGIGVGEVLRDTEEGFGLVECMRPSGRGMCRIEGGCRLRGVLGEATRAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  L+ NR  + ++ 
Sbjct: 121 AVLDRYTLADLLENRDELAQLL 142


>gi|91783441|ref|YP_558647.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687395|gb|ABE30595.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           xenovorans LB400]
          Length = 166

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS   L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISDAYGISRNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  CF   + +   C +   C L   L  A +A
Sbjct: 61  NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I  + +    +  +  
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145


>gi|145300994|ref|YP_001143835.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853766|gb|ABO92087.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 150

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRN 133
           +VL +Y++   VR+
Sbjct: 118 EVLGEYTLADAVRD 131


>gi|332978237|gb|EGK14968.1| transcriptional repressor NsrR [Psychrobacter sp. 1501(2011)]
          Length = 171

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 28/166 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55
           M LT  +DY +R LMY A+    P+R     I+ IA +  IS   L K++  L + G +E
Sbjct: 1   MRLTNYSDYALRTLMYLAV---IPDRDTLATITDIANSYQISRSHLTKVIHQLAQIGYIE 57

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------------------SH 95
           ++RG+ GG+RL +PA  I + +V++ TE  F V  CFA                     +
Sbjct: 58  SIRGKNGGIRLAKPAADIILGEVIRQTEPDFHVVPCFALLPSRTKPKENQVESLNTPMKY 117

Query: 96  KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
              C +   C L SV  +A  AF  V+  Y++  +V N   + +I 
Sbjct: 118 SESCAITPVCKLKSVFAEATQAFLKVMDDYTLADIVNNEEELWQIL 163


>gi|330990437|ref|ZP_08314396.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
          SXCC-1]
 gi|329762474|gb|EGG78959.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
          SXCC-1]
          Length = 207

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 58/93 (62%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY +R L+Y  +H D    I ++AEA  ISE  L K++  L + G V+T+RGR
Sbjct: 1  MRLTLYTDYALRTLLYLGVHADRRVSIREVAEAYGISENHLVKVIHHLGRGGFVDTLRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           GG+ L RPADQI + DVV+ TEE   +  C +
Sbjct: 61 GGGLMLARPADQINVGDVVRHTEEDMALVGCMS 93


>gi|117619511|ref|YP_854778.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560918|gb|ABK37866.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 150

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRN 133
           +VL +Y++   VR+
Sbjct: 118 EVLGEYTLADAVRD 131


>gi|172060807|ref|YP_001808459.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993324|gb|ACB64243.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
          Length = 172

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145


>gi|146279260|ref|YP_001169418.1| hypothetical protein Rsph17025_3229 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557501|gb|ABP72113.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 144

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK +DY +RVL+Y A I +     I + A    IS+  L K++  L+ AG ++  RG
Sbjct: 1   MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMSLIHAGFLQGTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL RPA++I + +V++ATE  F + ECF      C +   C L  +  KA+ +F 
Sbjct: 61  RTGGFRLARPANEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPIFAKAVKSFM 119

Query: 120 DVLTQYSI 127
           D L Q++I
Sbjct: 120 DTLDQFTI 127


>gi|114777146|ref|ZP_01452166.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
 gi|114552667|gb|EAU55127.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
          Length = 153

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 7/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT+ TDY +RVL+Y  +   YP R   I++I++A  I+   L K++  L + G + T 
Sbjct: 1   MQLTQYTDYSLRVLIYLGL---YPERRCTITEISDAYDINRNHLVKVVHSLSQDGWITTT 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG+ L     QI I  V++ TE    + ECF +    CP+  +C L   L +A  A
Sbjct: 58  RGKSGGMVLSFNPKQINIGAVIQGTEPHMNLLECFDNKYNTCPITSACVLKHALYQARKA 117

Query: 118 FFDVLTQYSIE-CLVRNRSSIKKIFNAG 144
           F +VL+ Y++E  LV+    I  + N G
Sbjct: 118 FMNVLSNYTLEDVLVQPEILISLLGNVG 145


>gi|300022521|ref|YP_003755132.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524342|gb|ADJ22811.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 145

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY     D    I +IA+   ISE  L K++  L + G V+T+RGR
Sbjct: 1   MRLTVHSDYALRVLMYLGAREDRLATIQEIAKVYAISENHLMKVVNKLARHGFVKTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+ +TI +V++  EE F V ECF    + C +  SC L   LR+A++AF  
Sbjct: 61  GGGLRLGRPAEDLTIGEVLRVVEEDFHVVECFGESNM-CRISQSCRLRLALRRAIDAFLA 119

Query: 121 VLTQYSIECLVRNRSSI 137
            L ++++  ++ NR+SI
Sbjct: 120 ELDEWTLADILSNRNSI 136


>gi|330817194|ref|YP_004360899.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
 gi|327369587|gb|AEA60943.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
          Length = 156

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+ ++  + I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRSEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRKA 114
            GG+R+   + ++TI +VV+ATE  F +  CF        H+  C +   C L  VL  A
Sbjct: 61  NGGLRINANSGRLTIGEVVRATESDFALVGCFGGEGQGVEHR-SCVIEPHCRLKGVLYAA 119

Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
             AFF  L +++I  L R  S +
Sbjct: 120 REAFFSELDRHTIAELSRPASPL 142


>gi|307729564|ref|YP_003906788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1003]
 gi|307584099|gb|ADN57497.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1003]
          Length = 169

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+     + I  I+EA  +S+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGQGLSTIQDISEAYGVSKNHLMKVVQQLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  C      +   C +   C L +VL  A +A
Sbjct: 61  NGGLRLAERTRSLTVGEIVRATESDFALVACLPDQNGERRACVITPQCRLRNVLEAARHA 120

Query: 118 FFDVLTQYSIE 128
           F   L +++I+
Sbjct: 121 FLAELDRHTID 131


>gi|145600842|ref|YP_001164918.1| transcriptional repressor NsrR [Yersinia pestis Pestoides F]
 gi|162419331|ref|YP_001605273.1| transcriptional repressor NsrR [Yersinia pestis Angola]
 gi|165926673|ref|ZP_02222505.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936529|ref|ZP_02225097.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011855|ref|ZP_02232753.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214016|ref|ZP_02240051.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400661|ref|ZP_02306170.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418774|ref|ZP_02310527.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423241|ref|ZP_02314994.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170026007|ref|YP_001722512.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII]
 gi|186893791|ref|YP_001870903.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+]
 gi|294502487|ref|YP_003566549.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
 gi|108777100|gb|ABG19619.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Nepal516]
 gi|108781808|gb|ABG15866.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Antiqua]
 gi|145212538|gb|ABP41945.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Pestoides F]
 gi|162352146|gb|ABX86094.1| nitrite-sensitive repressor NsrR [Yersinia pestis Angola]
 gi|165915645|gb|EDR34254.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921296|gb|EDR38520.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989214|gb|EDR41515.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204811|gb|EDR49291.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962768|gb|EDR58789.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167050029|gb|EDR61437.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057411|gb|EDR67157.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752541|gb|ACA70059.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis YPIII]
 gi|186696817|gb|ACC87446.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis PB1/+]
 gi|262360517|gb|ACY57238.1| hypothetical protein YPD4_0329 [Yersinia pestis D106004]
 gi|262364465|gb|ACY61022.1| hypothetical protein YPD8_0332 [Yersinia pestis D182038]
 gi|294352946|gb|ADE63287.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
          Length = 154

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 14  VQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 73

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 74  KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 129

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ S + K+ 
Sbjct: 130 KELDNYTLADMVKDNSPLYKLL 151


>gi|329119509|ref|ZP_08248194.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464442|gb|EGF10742.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 153

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL Y A++++    I+ IAE   IS+  L K++  LVK G +++VRG+
Sbjct: 1   MYLTQQTDYALRVLAYAAVNSEELVNIATIAEVYGISKSHLMKVVTALVKGGFLDSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A+ I + DVV+  E    V EC  +    C L   C L SVL  A  AF +
Sbjct: 61  GGGLRLRRQAELIRLGDVVRHMEPMKLV-ECMGAGN-QCLLTSCCLLASVLNDAGKAFLE 118

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L ++++  L+ N+ +   +++
Sbjct: 119 HLDKFTLADLI-NKPTFDMLYS 139


>gi|21957349|gb|AAM84224.1|AE013666_4 hypothetical protein y0636 [Yersinia pestis KIM 10]
 gi|45435245|gb|AAS60805.1| Predicted transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 158

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 18  VQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 77

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 78  KNGGIRLGKPADQILIGDVVRQMEPLTLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 133

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ S + K+ 
Sbjct: 134 KELDNYTLADMVKDNSPLYKLL 155


>gi|218290218|ref|ZP_03494372.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239693|gb|EED06884.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 140

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT  TDY +RVL+Y A   D    ++ +IA    IS   L K +  L + G +ETVRG
Sbjct: 1   MNLTLFTDYALRVLIYTANQPDGKLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL  PA  I + DVV+A E+ F V  CFA+    C L+  C L   L +A++AF 
Sbjct: 61  RGGGMRLALPARDIRVGDVVRAVEDDFAVVGCFANDS--CVLLPGCRLKRALGEAVDAFL 118

Query: 120 DVLTQYSI 127
           + L +Y++
Sbjct: 119 ETLNRYTL 126


>gi|330831524|ref|YP_004394476.1| Rrf2 family protein [Aeromonas veronii B565]
 gi|328806660|gb|AEB51859.1| Rrf2 family protein [Aeromonas veronii B565]
          Length = 150

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFGISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRN 133
           +VL +Y++   VR+
Sbjct: 118 EVLGEYTLADAVRD 131


>gi|77361335|ref|YP_340910.1| hypothetical protein PSHAa2419 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876246|emb|CAI87468.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 149

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M++++ TDY +RVL+Y AI+ +      I +IAE   +S+  L K++Q L   G + + R
Sbjct: 1   MNISRFTDYSLRVLIYLAINKNTNEIKTIKEIAECYGVSKNHLMKVVQQLSAQGYINSTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG++L   A+QI I  +V++ E    + ECF  +   C +  +C L  VL  A+ +F
Sbjct: 61  GKNGGIKLNHAAEQINIGQLVRSFEGKSALVECFGENNF-CIITPACQLKKVLSHAIESF 119

Query: 119 FDVLTQYSIECLVR--NRSSIKKIF 141
           F+ L QY++  L+   N++ + KI 
Sbjct: 120 FNCLDQYTLADLINGPNKAVLSKIL 144


>gi|238764698|ref|ZP_04625642.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
           33638]
 gi|238697094|gb|EEP89867.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
           33638]
          Length = 141

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|332160028|ref|YP_004296605.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664258|gb|ADZ40902.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862089|emb|CBX72255.1| HTH-type transcriptional repressor nsrR [Yersinia enterocolitica
           W22703]
          Length = 141

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|30248932|ref|NP_841002.1| hypothetical protein NE0928 [Nitrosomonas europaea ATCC 19718]
 gi|30138549|emb|CAD84839.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
           19718]
          Length = 151

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L Y  +  +  + I++IA+   IS   + KI+  L + G V+T+RG+
Sbjct: 1   MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQLGYVDTLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I +V++ TE S  + ECF S++  C +  SC L + + +AL+AF  
Sbjct: 61  NGGIRLAHAPEKINIGEVIRHTETSMDIVECF-SNQNSCIIGCSCVLRTAISEALSAFMA 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL  Y++  L+  R  + +
Sbjct: 120 VLDDYTLADLIAPRRQLSR 138


>gi|238787545|ref|ZP_04631343.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
           ATCC 33641]
 gi|238724332|gb|EEQ15974.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
           ATCC 33641]
          Length = 141

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|294143081|ref|YP_003559059.1| Rrf2 family protein [Shewanella violacea DSS12]
 gi|293329550|dbj|BAJ04281.1| Rrf2 family protein [Shewanella violacea DSS12]
          Length = 152

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  TD+GIR LMY AI  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTHYTDFGIRTLMYLAIQPDRETLFRIAEITQVFDLSPNHVSKIVHRLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +    I I  +V+  E S    +C   +   C L  SC L  VL +A+ A+
Sbjct: 61  GKSGGFRLGKSPQDINIGQLVRVLENSLAPIDCSKPY---CRLTPSCQLRGVLAEAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QYS+  +V N   + K+ 
Sbjct: 118 LTVLDQYSLADIVSNNRELIKLL 140


>gi|123440766|ref|YP_001004758.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|189030891|sp|A1JIS1|NSRR_YERE8 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|122087727|emb|CAL10512.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 141

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|115351837|ref|YP_773676.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170703406|ref|ZP_02894182.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|115281825|gb|ABI87342.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
 gi|170131682|gb|EDT00234.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
          Length = 172

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLATLLG 145


>gi|77465342|ref|YP_354845.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464803|ref|YP_001045916.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221369349|ref|YP_002520445.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
 gi|77389760|gb|ABA80944.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126106614|gb|ABN79144.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221162401|gb|ACM03372.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
          Length = 145

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 6/130 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETV 57
           M LTK +DY +RVL+Y A   D   R+  I E   I   S+  L K++  L+ AG ++  
Sbjct: 1   MRLTKFSDYALRVLLYAASIED--GRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGT 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG RL RPA +I + +V++ATE  F + ECF      C +   C L  +L KA+++
Sbjct: 59  RGRTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPILAKAVSS 117

Query: 118 FFDVLTQYSI 127
           F D L +++I
Sbjct: 118 FMDTLDEFTI 127


>gi|238795296|ref|ZP_04638875.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
           29909]
 gi|238725381|gb|EEQ16956.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
           29909]
          Length = 141

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPANQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ S + K+ 
Sbjct: 117 NELDNYTLADMVKDNSPLYKLL 138


>gi|264678558|ref|YP_003278465.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Comamonas testosteroni CNB-2]
 gi|262209071|gb|ACY33169.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           CNB-2]
          Length = 148

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           TDY +R+LM+ A   +    IS++A+A  ISE  L K+   L   G +ETVRG+ GG+RL
Sbjct: 2   TDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGKGGGMRL 61

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            R   QI I  V++  E  F + ECF +    C L G C L  +L+ AL++F   L  ++
Sbjct: 62  AREPQQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMAHLDGFT 120

Query: 127 IECLV 131
           +  L+
Sbjct: 121 LADLI 125


>gi|157377604|ref|YP_001476204.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319978|gb|ABV39076.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
           HAW-EB3]
          Length = 151

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY AI  D     RIS+I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGIRTLMYLAIQPDREELFRISEITEVFELSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL      I +  +V+  E S    +C   +   C    SC L  VL  A+ A+
Sbjct: 61  GKSGGFRLGMSPKDINVGKLVRVLENSLAPIDCSKPY---CRFTPSCQLKGVLADAVAAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             V+  Y++E +V N+  +K++ 
Sbjct: 118 LAVIDAYTLEDIVSNKDELKQLL 140


>gi|291279503|ref|YP_003496338.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
           desulfuricans SSM1]
 gi|290754205|dbj|BAI80582.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
           desulfuricans SSM1]
          Length = 134

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK  DY +RV+++ A  + D     S+++E C I + FL KILQ L K G++++ +G
Sbjct: 1   MKLTKAADYALRVMLFIASSDKDKTFMRSELSEICDIPDSFLGKILQTLAKNGLLDSSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG +L +  ++IT+ D+V A +   ++ EC    ++ C     C + +VL K  N F 
Sbjct: 61  KKGGFKLSKSPEEITLYDIVTAIDGDVYINECIDKPEV-CKRSDICKINNVLAKIKNNFV 119

Query: 120 DVLTQYSIECLVRNR 134
             L  Y+++ L+ N+
Sbjct: 120 KELKNYTLKDLLTNK 134


>gi|154685398|ref|YP_001420559.1| YhdE [Bacillus amyloliquefaciens FZB42]
 gi|154351249|gb|ABS73328.1| YhdE [Bacillus amyloliquefaciens FZB42]
          Length = 144

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  H+D  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  LV+N+  I ++ 
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLL 142


>gi|148652572|ref|YP_001279665.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
           PRwf-1]
 gi|148571656|gb|ABQ93715.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
           PRwf-1]
          Length = 175

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 26/164 (15%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55
           M LT  +DY +R LMY A+    P+R     I+ IA +  IS   L KI+  L + G +E
Sbjct: 1   MRLTNYSDYALRTLMYLAV---IPDRNTLATITDIANSYQISRSHLTKIIHQLAQIGYIE 57

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----------------- 98
           ++RG+ GG+RL + A  I + +V++ TE  F V  CF +   D                 
Sbjct: 58  SIRGKNGGIRLAKAAQDINLGEVIRQTEPDFHVVPCFPAPGCDAQSRSNSKSKAQPKPAD 117

Query: 99  -CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            C +   C L SV  +A  AF  V+  Y++  +V N  ++ +I 
Sbjct: 118 YCAITPVCKLKSVFAEATGAFLKVMDNYTLADIVANEEALWQIL 161


>gi|91205424|ref|YP_537779.1| putative transcriptional regulator [Rickettsia bellii RML369-C]
 gi|91068968|gb|ABE04690.1| Putative transcriptional regulator [Rickettsia bellii RML369-C]
          Length = 136

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A        I +IAE   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P   I + D+++  E +  + ECF      C +  SC     +++A NAF  
Sbjct: 61  GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 120

Query: 121 VLTQYSIECLVRNR 134
            L  Y++E  + N+
Sbjct: 121 TLNNYTLEDAINNK 134


>gi|332288684|ref|YP_004419536.1| iron-responsive transcriptional regulator [Gallibacterium anatis
           UMN179]
 gi|330431580|gb|AEC16639.1| iron-responsive transcriptional regulator [Gallibacterium anatis
           UMN179]
          Length = 148

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TDY +RVL+Y A H D  + I +IA A  ISE  L K++  L K  ++ ++RG+
Sbjct: 1   MKLSTFTDYNLRVLLYLAAHQDRLSTIQEIALAYNISENHLMKVIHHLAKNDLILSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   ++ +  +V+  E+   + EC    K  C +  SC L   L  A N+F++
Sbjct: 61  GGGIRLHRAPSELNLGKIVRLAEQKGPIVECLGD-KNKCCIAPSCRLPLALNDAFNSFYE 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L++Y++  ++ + ++++ + 
Sbjct: 120 TLSKYTLADVMIDGATMQPLL 140


>gi|329115699|ref|ZP_08244418.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
 gi|326694969|gb|EGE46691.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
          Length = 155

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 15/149 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R L++     D  + I +IAE   ISE  + K++  L K G +ET+RGR
Sbjct: 6   MKLNLQTDYALRALIFLGSRTDRLSSIREIAETYRISETHMVKVIHRLGKGGFIETLRGR 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115
            GG+RL R A+ I I  VV   EE   + +C  SHK       C L+ SC L  VL + +
Sbjct: 66  NGGIRLGRLAETIRIGAVVSYMEEDMSLLDCL-SHKTCEREGTCILMPSCRLRGVLSETM 124

Query: 116 NAFFDVLTQYSI-------EC--LVRNRS 135
            A   VL +Y++       EC  L+RN +
Sbjct: 125 QAMMSVLDRYTLADMITPFECERLIRNET 153


>gi|304311681|ref|YP_003811279.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
 gi|301797414|emb|CBL45634.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
          Length = 166

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 13/153 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR------------ISQIAEACCISELFLFKILQPL 48
           M +T  TDY +RVLMY A+  + PN             I +IA A  IS   L K++  L
Sbjct: 1   MRITTFTDYTLRVLMYLAL-KEKPNEPSESRESVALATIPEIAAAYGISSNHLMKVVHHL 59

Query: 49  VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
            + G +E++RG+ GG+RL    DQI +  V++A+E +  + EC       C +   C L 
Sbjct: 60  ARTGTIESIRGKGGGIRLAAAPDQIRLGQVIRASESNGPIVECLGEEPGVCKIAPVCRLA 119

Query: 109 SVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           ++L  A  A +  L QY++  L R    ++ + 
Sbjct: 120 NILGTAFEALYASLDQYTLADLTRQSKPLQGLL 152


>gi|299131984|ref|ZP_07025179.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
 gi|298592121|gb|EFI52321.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
          Length = 149

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  +DY +R+LMY A+  D   R   I + AEA  IS   L K+   L +AG ++ V
Sbjct: 1   MRLTNFSDYALRILMYAAVVPD--GRLITIEETAEAYGISRAHLMKVANQLTRAGYMKAV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+ L +  D+I + DV++ATE  F + EC  +    C +   C L   L +AL A
Sbjct: 59  RGRSGGLTLAKRPDRIRLSDVLRATEPDFALVECMTADN-RCMISPRCRLRGALNEALAA 117

Query: 118 FFDVLTQYSIECLV 131
           F + L  Y++  L+
Sbjct: 118 FLETLDGYTLADLI 131


>gi|296116952|ref|ZP_06835554.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976518|gb|EFG83294.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 159

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y  IH D    I +IA+A  ISE  L KI+  L + G VET+RGR
Sbjct: 10  MRLTLHTDYALRTLIYLGIHTDRLTSIHEIAQAYGISENHLIKIIHRLGRGGFVETLRGR 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
           RGG+RL RPA  I I DVV+ TEE   +  C    A     C LVG C L  +L +AL +
Sbjct: 70  RGGLRLGRPAHDILIGDVVRYTEEDLGLVSCMQAPAEGVRPCLLVGGCSLRGILNEALGS 129

Query: 118 FFDVLTQYSIE 128
           F  VL  Y++E
Sbjct: 130 FMSVLDSYTLE 140


>gi|157827027|ref|YP_001496091.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389]
 gi|157802331|gb|ABV79054.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389]
          Length = 149

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A        I +IAE   IS   L K++  L + G + + +G+
Sbjct: 14  MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 73

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P   I + D+++  E +  + ECF      C +  SC     +++A NAF  
Sbjct: 74  GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 133

Query: 121 VLTQYSIECLVRNR 134
            L  Y++E  + N+
Sbjct: 134 TLNNYTLEDAINNK 147


>gi|254504883|ref|ZP_05117034.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
 gi|222440954|gb|EEE47633.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
          Length = 144

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+LM  +  +D P  + ++     +++  + KI+  L KAG +ET RGR
Sbjct: 9   MRLSQASDFALRLLMAIS-QSDAPQTVDKLTAQLGLAKSHVMKIVAQLAKAGYLETTRGR 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+ + AD I I DVV+  E    V  C       CP +  C L   + +A  AF D
Sbjct: 68  GGGIRIAKEADDIRIGDVVRLIEPDLGVVACLKDEPASCPFLPRCALKGAMARATEAFLD 127

Query: 121 VLTQYSIECLVRNRSSI 137
            L + ++  ++     I
Sbjct: 128 SLNEQTLGSILAGTQKI 144


>gi|163734089|ref|ZP_02141530.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
 gi|161392625|gb|EDQ16953.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
          Length = 149

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+L+   +        S+IA    +SE  L K+   LV+ G V + RGR
Sbjct: 1   MQLDKFTDYALRILITLVVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP ++I + +VV+       V ECF ++K  C ++ +CGL   L +A  AFF 
Sbjct: 61  NGGLTLARPPERILVGEVVRTMTRKEHVVECFGTNK-SCLILPACGLRQPLAEAQEAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L  Y++  + ++R S+  + N+
Sbjct: 120 TLDHYTLADVTQSRHSLGALLNS 142


>gi|294670388|ref|ZP_06735270.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307852|gb|EFE49095.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 149

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL Y A +++    I+ IAE   IS   L K+   LVK G +++VRG+
Sbjct: 1   MYLTQQTDYALRVLTYAAANSEGLVNIATIAEVYGISRSHLMKVATALVKGGFLDSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  ++I I DVV+  E    V EC  +    C L   C L+++L +A  AF  
Sbjct: 61  GGGLRLSRSEEEIVIGDVVRHMEPMKLV-ECMGADN-RCLLTSCCRLSNILNEAGQAFLA 118

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L ++++  L+ N+ ++  ++
Sbjct: 119 HLDKFTLSDLI-NQPTLDMLY 138


>gi|238750077|ref|ZP_04611580.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
           43380]
 gi|238711621|gb|EEQ03836.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
           43380]
          Length = 141

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA++I I DVV+  E    V  C +     C +  +C L S L +A+ +F 
Sbjct: 61  KNGGIRLGKPANEIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKSALNQAVKSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L  Y++  +V++ + + K+ 
Sbjct: 117 DELDNYTLADMVQDNTPLYKLL 138


>gi|119385748|ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119376343|gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 145

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 67/128 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDYG+RVLM  A   + P    QIA    IS+  L K++  L   G V + RGR
Sbjct: 1   MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +IT+  VV+  E  F + ECF +   +C L   C L   L  A  AF  
Sbjct: 61  SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120

Query: 121 VLTQYSIE 128
            L + ++E
Sbjct: 121 ELDRTTLE 128


>gi|313672577|ref|YP_004050688.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939333|gb|ADR18525.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 132

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 81/134 (60%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +TK +DY +RV+ + A    N Y  R ++++E C + + FL KILQ LVK+GI+E+ R
Sbjct: 1   MKITKASDYALRVVGFFATAEKNRYYMR-NELSEICNVPDSFLGKILQNLVKSGILESER 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+RGG ++ +  +++T+ D++++ E    + EC       C + G+C + ++L +     
Sbjct: 60  GKRGGFKMSKNPEEVTVYDIIRSVEGDVVINECLVEGNT-CKISGNCKIHNILDQVRCNL 118

Query: 119 FDVLTQYSIECLVR 132
            + L ++SI  LVR
Sbjct: 119 INELKRFSISDLVR 132


>gi|294084466|ref|YP_003551224.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664039|gb|ADE39140.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 149

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 71/127 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R LM  A++ +    IS+IAE   IS+  L K++  L   G + +  GR
Sbjct: 1   MRLRLQTDYALRALMCLAVNTERRVMISEIAEQQSISKNHLIKVIHRLTGLGFINSQPGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA QI I D+++  E      +CF      C L+  C L +VL  AL+AF+ 
Sbjct: 61  SGGLWLSRPAAQINIGDLIRQLEADSVFLDCFEGGAGRCRLIPQCQLKAVLADALDAFYA 120

Query: 121 VLTQYSI 127
           VL ++++
Sbjct: 121 VLDRFTL 127


>gi|229541297|ref|ZP_04430357.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229325717|gb|EEN91392.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 144

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY +R L+Y A +       I +IA+A  IS+  L KI   L + G+V+TVRG
Sbjct: 1   MRLTHYSDYALRELIYLASLEEGKLASIKEIADAYNISKNHLMKITYELSQLGLVKTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L +   +I +  +++ TE+ F + EC       C +   CGL  VL +AL A+ 
Sbjct: 61  RGGGICLNKHPREINVGKLIRITEDDFKLVECMEDGASACIISPVCGLKHVLNEALVAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++E LV++  S +++ 
Sbjct: 121 RVLDKYTLEDLVKDPLSYRQLL 142


>gi|50122544|ref|YP_051711.1| transcriptional repressor NsrR [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644039|sp|Q6D125|NSRR_ERWCT RecName: Full=HTH-type transcriptional repressor nsrR
 gi|49613070|emb|CAG76521.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 141

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C  SH+  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITAACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|52842742|ref|YP_096541.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629853|gb|AAU28594.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 143

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +  +C L SVL +A  AF  
Sbjct: 60  NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|171317873|ref|ZP_02907050.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171096942|gb|EDT41812.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 172

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++       C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATESDFALVGCFSADGGASRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145


>gi|238797601|ref|ZP_04641098.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
           43969]
 gi|238718598|gb|EEQ10417.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
           43969]
          Length = 141

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPAEQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|110678994|ref|YP_682001.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
 gi|109455110|gb|ABG31315.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
          Length = 147

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LM  A+        S+IA    +SE  L K+   LV+ G V + RGR
Sbjct: 1   MQLDKFTDYALRILMTLAVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  ++I +  VV+       V ECF + K  C ++ SCGL   L +A  AFF 
Sbjct: 61  NGGLTLARAPERILVGAVVRTMTRKAHVVECFGTDK-SCLILPSCGLRQPLAEAQEAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L  Y++  + R+R  +  + N
Sbjct: 120 TLDHYTLADVTRSRHGLGALLN 141


>gi|328544253|ref|YP_004304362.1| transcriptional regulator [polymorphum gilvum SL003B-26A1]
 gi|326413995|gb|ADZ71058.1| Putative transcriptional regulator [Polymorphum gilvum SL003B-26A1]
          Length = 155

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CA+++    R ++IA AC  SE  + +++  L + G + T RGR
Sbjct: 1   MRLTMRTNLAMRTLMFCAVNSARTVRKAEIARACNASENHIAQVIHLLSQKGYLRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I +  V ++ E     AECF      CPL  +C L   +  A+ AF+ 
Sbjct: 61  NGGIRLGMAMEEINVGTVFRSFEADVPFAECFQGVDNRCPLTAACRLRIAIVGAVGAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   S+  LV     + +I 
Sbjct: 121 ALDGLSLADLVAGNRELHRIL 141


>gi|54298536|ref|YP_124905.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
 gi|148360004|ref|YP_001251211.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
 gi|296108175|ref|YP_003619876.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53752321|emb|CAH13753.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
 gi|148281777|gb|ABQ55865.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
 gi|295650077|gb|ADG25924.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
           Alcoy]
          Length = 143

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +  +C L SVL +A  AF  
Sbjct: 60  NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSI 137
           +L QY++  ++ N S +
Sbjct: 120 ILEQYTLADVLHNPSEL 136


>gi|167856368|ref|ZP_02479095.1| sec-independent translocase [Haemophilus parasuis 29755]
 gi|167852506|gb|EDS23793.1| sec-independent translocase [Haemophilus parasuis 29755]
          Length = 147

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY  RVLMY A H D  + I Q+AE+  +S+  L K++  + K G + T RG+
Sbjct: 1   MHLSKFTDYAFRVLMYLAHHQDEVHTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+      + + +V++  + +  + +C +     C L   C L SVL  AL  F+ 
Sbjct: 61  GGGIRISSLILSMAVGEVIRTLQGNPRLIDCNSP---ACILKPHCHLKSVLDHALEHFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QYS+   + ++  IK I 
Sbjct: 118 YLNQYSVSECIGSQKVIKGIL 138


>gi|284006631|emb|CBA71892.1| transcriptional regulator [Arsenophonus nasoniae]
          Length = 140

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    I+++     +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPKDKMTNITEVTNVYGVSRNHMVKIINQLSRVGLVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PADQI I +VV+  E    V  C + +   C +  +C L  +L +A++ F 
Sbjct: 61  KNGGIYLGKPADQIRIGEVVRLLEPLALV-NCGSDY---CHITSACRLKQILNQAIDHFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L +Y++  L++N   + K+ 
Sbjct: 117 NELDKYTLADLIKNNEPLYKLL 138


>gi|161524598|ref|YP_001579610.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189350646|ref|YP_001946274.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198118|ref|ZP_03571164.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
 gi|221208391|ref|ZP_03581394.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
 gi|221215143|ref|ZP_03588110.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
 gi|160342027|gb|ABX15113.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans ATCC 17616]
 gi|189334668|dbj|BAG43738.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165079|gb|EED97558.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
 gi|221171804|gb|EEE04248.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
 gi|221182050|gb|EEE14451.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
          Length = 161

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG+RL   + ++T+ +VV+ATE  F +  CF        C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPASLKLTVGEVVRATETDFALVGCFVAGDDTRGCVIEPQCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  L     ++  +  
Sbjct: 121 FAELERHTLAELAEPAPALVSLLG 144


>gi|15613620|ref|NP_241923.1| hypothetical protein BH1057 [Bacillus halodurans C-125]
 gi|8480599|sp|Q9RC41|NSRR_BACHD RecName: Full=HTH-type transcriptional regulator nsrR
 gi|5822814|dbj|BAA83958.1| YHDE [Bacillus halodurans]
 gi|10173672|dbj|BAB04776.1| BH1057 [Bacillus halodurans C-125]
          Length = 146

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R+L+Y A+   D  + + Q+A    IS   L K+   L K G++ET++G
Sbjct: 1   MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I  VVK TE++  + ECF      C L   C L  VL +AL A+ 
Sbjct: 61  RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY+++ L+ N   ++ + 
Sbjct: 121 RVLEQYTLKDLLTNEDELQALL 142


>gi|253689808|ref|YP_003018998.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259514610|sp|C6DE26|NSRR_PECCP RecName: Full=HTH-type transcriptional repressor nsrR
 gi|251756386|gb|ACT14462.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 141

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C  SH+  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 QELDQYTLADMVKENPPLYKLL 138


>gi|238786347|ref|ZP_04630282.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
           43970]
 gi|238712746|gb|EEQ04823.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
           43970]
          Length = 141

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       I+Q+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTNITQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    V  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPAEQIRIGDVVRQLEPLSLV-NCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|261822840|ref|YP_003260946.1| transcriptional repressor NsrR [Pectobacterium wasabiae WPP163]
 gi|261606853|gb|ACX89339.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           wasabiae WPP163]
          Length = 141

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C  SH+  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|238027044|ref|YP_002911275.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           glumae BGR1]
 gi|237876238|gb|ACR28571.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           glumae BGR1]
          Length = 156

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 7/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
            GG+R+   +  +T+ +VV+A E  F +  CF       +H+  C +   C L  VL  A
Sbjct: 61  NGGLRMNPASATLTVGEVVRAGESDFALVGCFGGEGEAIAHR-GCVIEPHCRLKGVLAAA 119

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
            +AFF  L +++I  L    + + +   
Sbjct: 120 RDAFFAELDRHTIADLTHPGAQLARALG 147


>gi|85705587|ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217]
 gi|85670012|gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217]
          Length = 138

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 72/133 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   +     +++A+   +S   L KI+Q L + G++ET RG 
Sbjct: 1   MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +PA ++ +  +V+  EE   + ECFA+   DC + G C L + LR A  AF  
Sbjct: 61  GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120

Query: 121 VLTQYSIECLVRN 133
            L   ++  +  N
Sbjct: 121 DLEGSTLAAIALN 133


>gi|237749286|ref|ZP_04579766.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229380648|gb|EEO30739.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 139

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++TDY +R+LMY A H +    I++IAE   IS   L KI+  L  +  +E++RG 
Sbjct: 1   MQLTQQTDYALRILMYAAAHPERLVNITEIAELYGISRSHLTKIVANLASSQYLESIRGN 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL +PA +I I ++++   E   + +C +  +  C +  +C L  V  +A +AF  
Sbjct: 61  KGGIRLNKPASEINIGEIIRRF-EPLAIVDCMSKTR-SCVITPNCKLKHVFFEATDAFLK 118

Query: 121 VLTQYSI 127
              QY++
Sbjct: 119 TFDQYTL 125


>gi|321314662|ref|YP_004206949.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           BSn5]
 gi|291483405|dbj|BAI84480.1| hypothetical protein BSNT_01615 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020936|gb|ADV95922.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           BSn5]
          Length = 146

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDY +RVL++ A     P  +S   QIAE   IS+  L K++  L + G VET+
Sbjct: 1   MKLTNYTDYSLRVLIFLAAER--PGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+RL    + I I +VV+ TE+ F + ECF ++K  C +   CGL  VL +AL A
Sbjct: 59  RGRGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLA 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
           +  VL +Y++  LV+N+  I K+ 
Sbjct: 119 YLAVLDKYTLRDLVKNKEDIMKLL 142


>gi|16078003|ref|NP_388819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221308776|ref|ZP_03590623.1| hypothetical protein Bsubs1_05178 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313099|ref|ZP_03594904.1| hypothetical protein BsubsN3_05114 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318025|ref|ZP_03599319.1| hypothetical protein BsubsJ_05058 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322299|ref|ZP_03603593.1| hypothetical protein BsubsS_05159 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|6136719|sp|O07573|NSRR_BACSU RecName: Full=HTH-type transcriptional regulator nsrR
 gi|2226194|emb|CAA74483.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633273|emb|CAB12777.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 146

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDY +RVL++ A     P  +S   QIAE   IS+  L K++  L + G VET+
Sbjct: 1   MKLTNYTDYSLRVLIFLAAER--PGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+RL    + I I +VV+ TE+ F + ECF ++K  C +   CGL  VL +AL A
Sbjct: 59  RGRGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLA 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
           +  VL +Y++  LV+N+  I K+ 
Sbjct: 119 YLAVLDKYTLRDLVKNKEDIMKLL 142


>gi|227112379|ref|ZP_03826035.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227325972|ref|ZP_03829996.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 141

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C  SH+  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELEPLTLV-NC--SHEF-CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|54295371|ref|YP_127786.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
 gi|53755203|emb|CAH16696.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
          Length = 143

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +   C L SVL +A  AF  
Sbjct: 60  HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|307611397|emb|CBX01061.1| hypothetical protein LPW_27621 [Legionella pneumophila 130b]
          Length = 143

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKG-SCTIKDITDAYTISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +   C L SVL +A  AF  
Sbjct: 60  HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|88812644|ref|ZP_01127891.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
 gi|88790060|gb|EAR21180.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
          Length = 145

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY ++  +  + IS+IAE   IS   L K++  L + G VETVRG+ GG+RL      I 
Sbjct: 1   MYLSLKENELSTISEIAERYAISRNHLMKVVYELGRLGYVETVRGKHGGMRLRHSPASIN 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +VV+ TE    + ECF+S    C L  SC L  VLR+AL AF  VL +YS+  L+  +
Sbjct: 61  LGEVVRRTENDMALVECFSSQNY-CRLTPSCVLHGVLREALQAFLAVLDRYSLADLLEPK 119

Query: 135 SSIKKIF 141
             +  + 
Sbjct: 120 QKLANLL 126


>gi|78485131|ref|YP_391056.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363417|gb|ABB41382.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 156

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TDY +RVLMY A+ +  D   +I  I+E   I +  L K++  L K  +++TVR
Sbjct: 12  MQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIPKNHLMKVVHQLGKENMIKTVR 71

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ LC+P   I +  V++  E +     C    K  C +   C L   L KA+ AF
Sbjct: 72  GKHGGIMLCQPPSDIIVGHVIRKFEMTLSPVNC---EKPLCQIQEICLLKPALFKAMEAF 128

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              L QY++  + +N+  +K
Sbjct: 129 LSTLDQYTLADITKNQPCLK 148


>gi|148260837|ref|YP_001234964.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
           JF-5]
 gi|326404231|ref|YP_004284313.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146402518|gb|ABQ31045.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
           JF-5]
 gi|325051093|dbj|BAJ81431.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 139

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 65/125 (52%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LT  TDYG+R LM  AI  D     S +A    +S   L KIL  LV  G + + RG  G
Sbjct: 5   LTNYTDYGLRALMLLAIEPDRVQSTSALATRLDVSRHHLAKILMDLVAGGYLLSSRGPTG 64

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           GVRL +P  QI I DVV+  E    + ECF +    C L+ +C L   L +A +AF + L
Sbjct: 65  GVRLAKPPGQIRIGDVVRYLERDQAMVECFRADGGQCNLLPACRLRQTLNRAKDAFIETL 124

Query: 123 TQYSI 127
              S+
Sbjct: 125 NGKSL 129


>gi|332560946|ref|ZP_08415264.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332274744|gb|EGJ20060.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 143

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 6/128 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVRG 59
           +TK +DY +RVL+Y A   D   R+  I E   I   S+  L K++  L+ AG ++  RG
Sbjct: 1   MTKFSDYALRVLLYAASIED--GRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRG 58

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL RPA +I + +V++ATE  F + ECF      C +   C L  +L KA+++F 
Sbjct: 59  RTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNA-CCISRPCRLPPILAKAVSSFM 117

Query: 120 DVLTQYSI 127
           D L +++I
Sbjct: 118 DTLDEFTI 125


>gi|311105547|ref|YP_003978400.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
 gi|310760236|gb|ADP15685.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
          Length = 145

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D P  ++  +IA+   +S   L K+   + + G V T R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIADRFSVSRNHLVKVAHFMAQQGWVSTSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A    + D+++  E+   + +C    +  C L GSC L+ VL + L AF
Sbjct: 61  GKGGGLRLSRSAGDYRLGDLIRQLEQQGPLIDC---REPPCALDGSCRLSGVLAQTLQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           ++ L  Y++  LVR+ ++
Sbjct: 118 YEALNGYTLADLVRDPTA 135


>gi|114765192|ref|ZP_01444336.1| rrf2 family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542467|gb|EAU45494.1| rrf2 family protein [Roseovarius sp. HTCC2601]
          Length = 145

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+CA +       S+IA+ C  SE  L +++  L + G + T RGR GG+ L RPA+QI 
Sbjct: 1   MHCAANTGRLVTKSEIAKRCNASENHLAQVINQLAQLGYLHTQRGRNGGLELSRPAEQIR 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I DV +A E    +AECFA     CPL  +C L   L  A NAF+  L   +++ L+ + 
Sbjct: 61  IGDVFRALEAPVPLAECFADVDNTCPLTEACRLKIALSDAANAFYATLDPITLDTLICDN 120

Query: 135 SSIKKIF 141
           + +  I 
Sbjct: 121 APLMDIL 127


>gi|219871543|ref|YP_002475918.1| transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219691747|gb|ACL32970.1| transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 147

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY  RVLMY A H D    I Q+AE+  +S+  L K++  + K G + T RG+
Sbjct: 1   MHLSKFTDYAFRVLMYLAHHQDELRTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+      + + +V++  + +  + +C +     C L   C L SVL  AL  F+ 
Sbjct: 61  GGGIRISSLILSMPVGEVIRTLQGNPRLIDCNSP---ACILKPHCHLKSVLDHALEHFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QYSI   + ++  IK I 
Sbjct: 118 YLNQYSISECIGSQKLIKGIL 138


>gi|254498832|ref|ZP_05111541.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351940|gb|EET10766.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 143

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +       I++I+ A  IS   L KI+  L + GIV+T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIGVRQKICT-INEISIAYSISRNHLIKIIHRLSQIGIVKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    D+I +  ++   E +F +  CF  +K  C +  +C L ++L +A  AF  
Sbjct: 60  NGGIEMAISPDKINLKQLILKLEPNFDLVPCFNQNKEPCRIASACKLQTILYEAQKAFLT 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL ++++  ++ N++++ ++ 
Sbjct: 120 VLEKFTLADIMHNQAALHQLL 140


>gi|311067422|ref|YP_003972345.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
           1942]
 gi|310867939|gb|ADP31414.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
           1942]
          Length = 143

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  H +    I QIAE   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLATQHTEDLCNIKQIAETYSISKNHLMKVIYQLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +   CGL  V  +AL A+ 
Sbjct: 61  RGGGIRLGMAPEDINIGEVVRKTEDDFNIVECFDSGKNLCIISPVCGLKHVFNEALLAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  LV+N+  I ++ 
Sbjct: 121 SVLDKYTLGDLVKNKQDIMRLL 142


>gi|83310417|ref|YP_420681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945258|dbj|BAE50122.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 140

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++   H+     I++IAE   IS+  L K++  L ++G +ETVRG+
Sbjct: 1   MRLTLHTDYALRVLVHVGRHDGDLVTINEIAECYGISKNHLTKVVHQLGRSGYLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  + + + + ++ TEE F +  C      D C L   C     L   L+AFF
Sbjct: 61  YGGVRLLRQPEDVKLGEFIRETEEDFALVRCMRCDTPDECRLNAGCIARDALSSGLSAFF 120

Query: 120 DVLTQYSI 127
            VL  Y++
Sbjct: 121 KVLDGYTL 128


>gi|163856927|ref|YP_001631225.1| putative DNA-binding protein [Bordetella petrii DSM 12804]
 gi|163260655|emb|CAP42957.1| putative conserved DNA-binding protein [Bordetella petrii]
          Length = 145

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY    +D   P  I +IA    +S   + K++  L + G V T R
Sbjct: 1   MQLTRYTDFGLRVLMYLTQGDDRAVPATIPEIAARFNVSRNHMVKVVHFLARQGWVATTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL  P     + D+V+A E    +  C    +  C L G C L+ VL  +L  F
Sbjct: 61  GKGGGLRLAHPPSAYRVGDLVRALEHQGALINCA---EPPCALNGLCRLSGVLADSLQVF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D L ++++  LVR+ ++
Sbjct: 118 YDALNRHTLADLVRSPTA 135


>gi|296332358|ref|ZP_06874819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673638|ref|YP_003865310.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150276|gb|EFG91164.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411882|gb|ADM37001.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 146

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 85/144 (59%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDY +RVL++ A   + P  +S   QIAE   IS+  L K++  L + G VET+
Sbjct: 1   MKLTNYTDYSLRVLIFLAA--ERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETI 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+RL    + I I +VV+ TE+ F + ECF  +K  C +   CGL  VL +AL A
Sbjct: 59  RGRGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDVNKNLCVISPVCGLKHVLNEALMA 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
           +  VL  Y++  LV+N+  I K+ 
Sbjct: 119 YLAVLDNYTLRDLVKNKEDIMKLL 142


>gi|126732149|ref|ZP_01747951.1| CDG1D protein [Sagittula stellata E-37]
 gi|126707438|gb|EBA06502.1| CDG1D protein [Sagittula stellata E-37]
          Length = 150

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH +K TDY +RV +Y   H+     IS+IA A  +S+  L K++  LV+   +++ RGR
Sbjct: 1   MHFSKFTDYALRVCLYLGAHDGRVVPISEIARAHSLSQNNLMKVVNMLVEGNFLKSTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L R  D+I + DV +  E    + +C +     C L GSCGLT  L +A   F+ 
Sbjct: 61  AGGVQLARSPDRILVGDVARFMEGDAQMVDCSS-----CILRGSCGLTGALAEAKILFYQ 115

Query: 121 VLTQYSI 127
            L + SI
Sbjct: 116 TLNRNSI 122


>gi|293604765|ref|ZP_06687165.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
           43553]
 gi|292816934|gb|EFF76015.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
           43553]
          Length = 145

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLM      D P+   I +IA    +S   L K++  + + G + TVR
Sbjct: 1   MQLTRFTDFGLRVLMCLTQCRDRPSPVTIPEIAGRFEVSRNHLVKVVHFMSQRGWISTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A    + D+++  E+   + +C   H+  C L G+C L  VL + LNAF
Sbjct: 61  GKGGGLRLARDACAYRVGDLIRELEQQGPLIDC---HEPPCALDGACRLAGVLAQTLNAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D L  Y++  LVR+ ++
Sbjct: 118 YDALNGYTLADLVRDPTA 135


>gi|317407279|gb|EFV87255.1| hypothetical protein HMPREF0005_05535 [Achromobacter xylosoxidans
           C54]
          Length = 145

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D P    I +IA    +S   L K++  + + G V T R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIAARFDLSRNHLVKVVHFMSQRGWVSTAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ L RPA    + D+V+  E+   + +C    +  C L G+C L+ VL + L AF
Sbjct: 61  GKGGGLALARPAADYRLGDLVRELEQQGPLIDC---REPPCALDGACRLSGVLAQTLQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           ++ L  YS+  LVR+ ++
Sbjct: 118 YEALNGYSLADLVRDPTA 135


>gi|189425987|ref|YP_001953164.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter lovleyi SZ]
 gi|189422246|gb|ACD96644.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
          Length = 158

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A H    P +I  I+    IS  +L +I Q L KAGI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYHTGTAPAQIQDISRRQLISPRYLEQIFQNLKKAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113
            +GG  L R  DQIT+L+V++ATE+   + +C          K +CP  G+C   +V + 
Sbjct: 61  PQGGYTLARTPDQITVLEVIRATEQDALLVDCAGQGKKTRRRKNECPFEGNCVTQTVWKD 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A +   ++  + ++E L
Sbjct: 121 ANDLLAELFGKLTLETL 137


>gi|154253130|ref|YP_001413954.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154157080|gb|ABS64297.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 145

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 85/141 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L Y A+  D    IS++AE+  IS   L K+   L +AG VET+RGR
Sbjct: 1   MRLTLHTDYALRLLTYLALKPDEIATISEVAESYSISRNHLTKVAHELGRAGFVETLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A +I I DVV+A EE F + ECFA+    C +  +C L  VL++AL+A+  
Sbjct: 61  GGGLRLARAAGKIGIGDVVRAMEEDFCIVECFAAETDRCRIGPACRLKRVLKQALDAWLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   ++  LV     ++++ 
Sbjct: 121 VLDDTTLADLVERPQPLRRLL 141


>gi|160895967|ref|YP_001561549.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
           SPH-1]
 gi|160361551|gb|ABX33164.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
           SPH-1]
          Length = 146

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A H      I++IA+A  ISE  L K+   L   G + TVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL      I + DVV+  E    + ECF  +    C L   C L  VL  AL++F 
Sbjct: 61  GGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFM 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L  +++  L+   +S+ 
Sbjct: 121 AHLDGFTLADLLPAPASLP 139


>gi|302879682|ref|YP_003848246.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302582471|gb|ADL56482.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 132

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D  +R L+ C    + P  I+++AE C IS+  L K++  LV A +V + RGR
Sbjct: 1   MQLTVSSDSALRTLI-CLGKKNAPVTIAEVAEQCQISKSTLMKVVMTLVGANLVVSERGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L + A  I++  VV+  E S  + EC       CPL+  C L  VL  A   FF 
Sbjct: 60  NGGISLAQDAKDISVGSVVRLMENSLALVECMKDGTSTCPLLPKCRLKHVLYTAQENFFS 119

Query: 121 VLTQYSIECLVRN 133
            L   S+  L+R+
Sbjct: 120 TLDNTSLADLLRD 132


>gi|238755908|ref|ZP_04617236.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
           29473]
 gi|238705867|gb|EEP98256.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
           29473]
          Length = 141

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPPGQMTSISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C       C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAENIRIGDVVRELEPLSLVNCCSDF----CHITPACRLKQVLHQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ + + K+ 
Sbjct: 117 KELDNYTLADMVKDNAPLYKLL 138


>gi|317491645|ref|ZP_07950081.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921192|gb|EFV42515.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 144

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  TD+G+R LMY A    Y  R S  +IA    IS   + K++  LV  G +  VR
Sbjct: 1   MKLTTYTDFGLRALMYLA-SMPYGQRTSVGEIAGHYDISRNHMVKVVAQLVGLGYIHAVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ L +PA  I I  V++A E +    +C   H   C L+  C L + L+  + AF
Sbjct: 60  GKGGGIELGKPAADINIGQVIRALESNLNGIDC---HSPGCKLIKICQLQAALKVGMEAF 116

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
              +  Y++  LV NR  I  I  
Sbjct: 117 LTAMENYTLADLVSNRGEIIAILG 140


>gi|53803301|ref|YP_114917.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53757062|gb|AAU91353.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 150

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+ +RVL+Y  +    P    I +IAE   IS   L K++  L  AG++ T+R
Sbjct: 1   MQLTQFTDFSLRVLIYL-VRLPEPGMATIPEIAEYYRISRNHLVKVVNTLANAGLLVTMR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL RPAD ITI +VV+ TE +  + ECF      C +   C L ++L +A   F
Sbjct: 60  GKGGGLRLARPADTITIAEVVRLTEPNMNLVECFDPKASHCRIDRGCFLKAILYEARKDF 119

Query: 119 FDVLTQYSIECLVR 132
              L ++++    R
Sbjct: 120 LAALERHTLADAAR 133


>gi|296116983|ref|ZP_06835584.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976465|gb|EFG83242.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 167

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y     D    I  IA+   ISE  L K++  L + G + T RGR
Sbjct: 1   MRLTLYTDYALRTLLYLGAKPDTRVAIHDIAQTYDISENHLVKVVHKLGRGGFIVTKRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R    I I D+V+ TEE   +  C    K  C L G C L  ++ +ALNAF  
Sbjct: 61  NGGLLLARAPQDIRIGDIVRYTEEDMGIVAC-NQEKGSCRLAGVCRLQGLMGEALNAFMS 119

Query: 121 VLTQYSI 127
           VL + ++
Sbjct: 120 VLDRRTL 126


>gi|46201636|ref|ZP_00054636.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 140

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++    N     I++IAE   IS+  L K++  L ++G +ETVRG+
Sbjct: 1   MRLTLHTDYALRVLVHVGRQNGDLVTINEIAERYGISKNHLTKVVHQLGRSGYLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  + + +   ++ TE+ F +  C      D C L   C     L   L+AFF
Sbjct: 61  YGGVRLLRQPEDVKLGQFIRETEDDFALVRCMRCDSPDECRLNAGCIARDALSSGLSAFF 120

Query: 120 DVLTQYSIECLVRN 133
            VL  Y++  ++ N
Sbjct: 121 KVLDGYTLADMLDN 134


>gi|50086222|ref|YP_047732.1| hypothetical protein ACIAD3227 [Acinetobacter sp. ADP1]
 gi|49532198|emb|CAG69910.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 145

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY +  ++ P  I+ IA    +S+  L KI+  + K G + T RG+
Sbjct: 4   MQLNKFTDYALRILMYVSRPSETPYTIADIANDLRVSQNHLVKIVHFMGKQGWIITTRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A  + + D+V++ +    + EC   H   C L   CGL  +L +AL  F+ 
Sbjct: 64  GGGLKLNPKALDLKLGDIVRSLQGDHQIVEC---HTPPCVLRSHCGLKGILDQALEQFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L QY ++ ++R   +   I
Sbjct: 121 SLDQYQLKDVLRAPPTYSPI 140


>gi|169632345|ref|YP_001706081.1| hypothetical protein ABSDF0414 [Acinetobacter baumannii SDF]
 gi|169151137|emb|CAO99806.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 148

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K G + T+RG 
Sbjct: 4   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQGWIITIRGN 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 121 SLDQYTLGEVLQQPKSA 137


>gi|84393609|ref|ZP_00992361.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
 gi|84375750|gb|EAP92645.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
          Length = 147

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y AI+N   + I  IA +  IS+  L KI+Q L   G +   RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG++L C P+ QI I  +V+  E+   + ECF      C +  +C L ++  +A   F+
Sbjct: 61  NGGLKLSCHPS-QINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFY 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L  YS++ L+    S K
Sbjct: 119 KSLDAYSLQDLLGEGHSYK 137


>gi|171914811|ref|ZP_02930281.1| Putative transcriptional regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 151

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L+Y   H D      ++AE   +S   L K+ + L + G + + RG 
Sbjct: 1   MQLTYHTDYALRLLIYLLSHPDRNVSTREMAEFYGVSVNHLVKVAKSLTQGGWLVSSRGI 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L +   +  + D+V+ TE +  V ECF      CP+  SC L  +L +A  AFFD
Sbjct: 61  GGGVMLAKHTPEAKVGDIVRYTENTDIV-ECFQPKTNTCPIHRSCDLKPILFQARRAFFD 119

Query: 121 VLTQYSIECLVRNRSSI 137
           VL  +++  L R+ + +
Sbjct: 120 VLDSFTVRDLARHPNEL 136


>gi|86148482|ref|ZP_01066771.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
 gi|218708942|ref|YP_002416563.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
 gi|85833722|gb|EAQ51891.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
 gi|218321961|emb|CAV17962.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
          Length = 147

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y AI+N   + I  IA +  IS+  L KI+Q L   G +   RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG++L C P+ QI I  +V+  E+   + ECF      C +  +C L ++  +A   F+
Sbjct: 61  NGGLKLSCHPS-QINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFY 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L  YS++ L+    S K
Sbjct: 119 KCLDAYSLQDLLGEGHSYK 137


>gi|157368684|ref|YP_001476673.1| transcriptional repressor NsrR [Serratia proteamaculans 568]
 gi|189030889|sp|A8G8V5|NSRR_SERP5 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|157320448|gb|ABV39545.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 141

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I + DVV+A E    V  C ++    C +  +C L  VL++ +  F 
Sbjct: 61  KNGGIRLGKPAETIRLGDVVRALEPLSLV-NCNSTF---CHITPACRLKQVLQQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V +  S+ K+ 
Sbjct: 117 EELDSHTLADMVEDNPSLYKLL 138


>gi|260433137|ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416965|gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 142

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   +     +++AE   +S   L K++  L +AG +ET RG 
Sbjct: 1   MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP +QI + DVV   E    + ECFA+    C L  SC L   L++A   F +
Sbjct: 61  GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120

Query: 121 VLTQYSI-ECLVR 132
            L + ++ +C+ R
Sbjct: 121 DLNRSTLADCIYR 133


>gi|332139491|ref|YP_004425229.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549513|gb|AEA96231.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
          Length = 150

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 76/136 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +   T+   RVL+Y A+  +   + S+IA+A  +S   L K++  L+  G +   +GR
Sbjct: 1   MKINTFTNLAFRVLIYLALRKNQTVKTSEIADAYFVSFNHLKKVITLLIDQGYIIGTKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + A+ I I +V + T E   +AECFAS    C +  +C L ++L+ A + F  
Sbjct: 61  GGGIRLAKEANLINIGEVFRLTIEDVALAECFASPTNKCVISPTCRLKTILQDAADKFIS 120

Query: 121 VLTQYSIECLVRNRSS 136
            L Q+++  LV++R  
Sbjct: 121 ELDQFTLHDLVKDREG 136


>gi|294651640|ref|ZP_06728944.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822489|gb|EFF81388.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 150

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I+ IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGLRLNPEAKSLKLGEIVRTLQGHQHIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  ++++
Sbjct: 118 SLNQYTLGEVIQH 130


>gi|254518111|ref|ZP_05130167.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911860|gb|EEH97061.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 132

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 79/132 (59%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+L+K TDY  R L+Y A + D    + ++A+   ISE  L KI+  L K  +V +++GR
Sbjct: 1   MYLSKFTDYSFRALVYLAENRDKLCTVEELAKKLEISEHHLKKIIHKLAKTDLVISMKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119
            GG++L      I + +VV+ TE++  +A+CF+     CP + S C L  ++ ++L+AF 
Sbjct: 61  TGGLKLGLEPQDINLGEVVRITEDNLNIAQCFSKEDC-CPFITSGCKLKGIMNESLSAFL 119

Query: 120 DVLTQYSIECLV 131
              ++Y+++ L+
Sbjct: 120 HEFSRYTLQDLL 131


>gi|294634461|ref|ZP_06712997.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
 gi|291092171|gb|EFE24732.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
          Length = 140

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y  A+       ISQ+ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALVYMAALPEGQMTSISQVTEVYGVSRNHMVKIINQLSRAGFVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPA +I I DVV+  E    V  C  S    C +  +C L  VL++A  AF 
Sbjct: 61  KNGGIRLGRPASEIRIGDVVRELEPLTLV-NCSQSF---CHITPACRLKPVLQRATEAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L + ++  L+ + S + K+ 
Sbjct: 117 AELDKCTLADLIEHNSPLYKLL 138


>gi|150016720|ref|YP_001308974.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903185|gb|ABR34018.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 130

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+L+K +DY  R+L+Y A + D    + ++A    ISE  L KI+  L K   V + +GR
Sbjct: 1   MNLSKFSDYAFRILIYLAKNQDKICTVEELASNLEISEHHLKKIVHRLGKTEYVISTKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      I +  ++  TEES  ++ECF+S K  C     C L ++L  ++N+F D
Sbjct: 61  NGGLKLGLEPKDINLGKILIITEESISISECFSSAKHTCS-TSKCKLKAILSSSINSFVD 119

Query: 121 VLTQYSIE 128
             ++Y++E
Sbjct: 120 EFSKYTLE 127


>gi|56475710|ref|YP_157299.1| rf2 family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56311753|emb|CAI06398.1| predicted transcriptional regulator,rf2 family [Aromatoleum
           aromaticum EbN1]
          Length = 211

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT+ TDY  R L++  +    P     IS ++E   I    L KI+  L + G +E +
Sbjct: 57  MQLTRYTDYAFRTLIFLGLQK--PAELVTISIVSEHFDIPRNHLVKIVNHLARLGYIEAL 114

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG+RL RPA +I +  VV+A EE+     C   H+  C ++ SC L  ++ +A  A
Sbjct: 115 RGKGGGIRLNRPATKINLRTVVEAVEETLTPINC---HEPTCRILPSCRLVGIMDEAQEA 171

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
           F  VL +YS+  L ++   ++K+ 
Sbjct: 172 FLAVLGKYSLSDLQQDPQRLEKLL 195


>gi|320539671|ref|ZP_08039335.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
           str. Tucson]
 gi|320030283|gb|EFW12298.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
           str. Tucson]
          Length = 141

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    ISQ+ E   +S   + KI+  L + G V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISQVTEVYGVSRNHMVKIINQLSRVGFVTAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +P + I + DVV+A E    V  C   H   C +  +C L  VL + +  F 
Sbjct: 61  KNGGIRLSKPGETIRLGDVVRALEPLSLV-NC---HSDFCHISPACRLNQVLHQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V   S + K+ 
Sbjct: 117 EELNNHTLADMVEGNSLLYKLL 138


>gi|293393207|ref|ZP_06637522.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
 gi|291424353|gb|EFE97567.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
          Length = 141

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPKDKMTSISEVTEVYGVSRNHMVKIINQLSRIGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    V  C       C +  +C L  VL++ +  F 
Sbjct: 61  KNGGIRLGQPAASIRIGDVVRALEPLSLV-NCSGDF---CHITPACRLKQVLQQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V + + + K+ 
Sbjct: 117 AELDNYTLADMVEDNAPLYKLL 138


>gi|317493575|ref|ZP_07951996.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918518|gb|EFV39856.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 141

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +  D    I+Q+ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALIYMASLPADQMTNITQVTDVYGVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I I DVV+  E    V  C  SH+  C +  +C L  VL+KA  AF 
Sbjct: 61  KNGGIRLGRAAKDIRIGDVVRELEPLTLV-NC--SHEF-CHITTACRLKQVLQKATQAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L Q ++  L+   S + K+ 
Sbjct: 117 AELDQCTLADLIEENSPLYKLL 138


>gi|262370584|ref|ZP_06063909.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262314384|gb|EEY95426.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 149

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY +     P+ I+++A+A  +SE  L KI+  + K   + T RGR
Sbjct: 1   MQLNKFTDYALRILMYVSQPKALPHTIAELAQALQVSENHLMKIVHFMAKQQWIITARGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL      + + ++V+  +    + EC       C L  +CGL  +L +AL+ F+ 
Sbjct: 61  GGGIRLNPETLHLRLGEIVRVLQADQNIVECNTP---PCVLRSNCGLKGILDQALDQFYH 117

Query: 121 VLTQYSI 127
            L QY++
Sbjct: 118 SLDQYTL 124


>gi|33415325|gb|AAQ18178.1| putative 15.3 kDa negative regulatory protein [Rhodobacter
           capsulatus]
          Length = 140

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL   TD+ +R L++ A   +       ++    IS   L K++Q LV  G   T++G 
Sbjct: 1   MHLLASTDFALRALLFLATDPERLVNTETMSRDLGISRNHLQKVVQALVAGGFARTIKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGVRL  PA +I I  VV+  EE   +  CFA     C +   CGL  VL  A + ++D
Sbjct: 61  RGGVRLAHPATEIRIGAVVRHFEEHQPIVACFAPEG-QCVIEPICGLKGVLAGAQSQYYD 119

Query: 121 VLTQYSI-ECLVRNR 134
            L  Y++ +CL R R
Sbjct: 120 FLNGYTLADCLRRPR 134


>gi|224825697|ref|ZP_03698801.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224601921|gb|EEG08100.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 150

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+MY A+  +    I++IA+A  IS   L K++  L + G + TVRG+
Sbjct: 1   MRLTAFTDYCLRVMMYSALAGERLVTINEIAQAYGISASHLTKVVFFLGQHGYLTTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     Q+ +  +V+A E    + ECF      C +  +C L +VL  A  AF+ 
Sbjct: 61  GGGMRLADDPQQVNLGKLVRAAETDNVLVECFDPQHSQCRIASACRLMNVLHAAQEAFYG 120

Query: 121 VLTQYSIECLV 131
            L+++++  L+
Sbjct: 121 ELSRHTLADLL 131


>gi|167719226|ref|ZP_02402462.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
          Length = 162

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+ +VV+ TE  F +  CFA    SH+  C +  +C L  V   A  
Sbjct: 61  NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHR-SCVIQSACRLRGVFAAARE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145


>gi|262275147|ref|ZP_06052958.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
           hollisae CIP 101886]
 gi|262221710|gb|EEY73024.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
           hollisae CIP 101886]
          Length = 144

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 9/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIA---EACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R LMY A+    P  ++ I    E   +S   + KI+  + +AG VE V
Sbjct: 1   MQLTSFTDYGLRALMYLAMLP--PGELTSITVVTEKYGVSRNHMVKIIHRMSQAGFVEAV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG+RL +PA+ I I DV+++ E    V  C      +C +  +C L + + KAL A
Sbjct: 59  RGKNGGIRLGKPAELIVIGDVIRSLEPLQLV-NCAPQ---NCHITPACRLKTAIAKALTA 114

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
           F   + +Y++  +V     ++ + 
Sbjct: 115 FLAEMDKYTLHDMVSGNDDLQHLL 138


>gi|254252225|ref|ZP_04945543.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
 gi|124894834|gb|EAY68714.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
          Length = 173

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 61/95 (64%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+T+RGR
Sbjct: 3  MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTIRGR 62

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           GG+RL   + Q+T+  VV+ATE  F +  CF++ 
Sbjct: 63 NGGLRLFPESLQLTVGQVVRATENDFALVGCFSAE 97


>gi|53719117|ref|YP_108103.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|53723605|ref|YP_103037.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76811401|ref|YP_333785.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121599434|ref|YP_993187.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|124383404|ref|YP_001026037.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126442087|ref|YP_001059260.1| Rrf2 family protein [Burkholderia pseudomallei 668]
 gi|126450910|ref|YP_001080694.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|126452205|ref|YP_001066527.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277214|ref|ZP_01763929.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|167003463|ref|ZP_02269249.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|167738224|ref|ZP_02410998.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167815414|ref|ZP_02447094.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167823823|ref|ZP_02455294.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
 gi|167845364|ref|ZP_02470872.1| putative transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|167893908|ref|ZP_02481310.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167902361|ref|ZP_02489566.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167910597|ref|ZP_02497688.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167918624|ref|ZP_02505715.1| putative transcriptional regulator [Burkholderia pseudomallei
           BCC215]
 gi|217421524|ref|ZP_03453028.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|237812583|ref|YP_002897034.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|238563651|ref|ZP_04610659.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|242317014|ref|ZP_04816030.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254177455|ref|ZP_04884110.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|254179517|ref|ZP_04886116.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|254189092|ref|ZP_04895603.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197503|ref|ZP_04903925.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254199984|ref|ZP_04906350.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|254206317|ref|ZP_04912669.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|254260786|ref|ZP_04951840.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
 gi|254297396|ref|ZP_04964849.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|254358271|ref|ZP_04974544.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|52209531|emb|CAH35484.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52427028|gb|AAU47621.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76580854|gb|ABA50329.1| Transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121228244|gb|ABM50762.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|124291424|gb|ABN00693.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126221580|gb|ABN85086.1| Rrf2 family protein [Burkholderia pseudomallei 668]
 gi|126225847|gb|ABN89387.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126243780|gb|ABO06873.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|134250864|gb|EBA50943.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|147749580|gb|EDK56654.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|147753760|gb|EDK60825.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|148027398|gb|EDK85419.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|157807741|gb|EDO84911.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|157936771|gb|EDO92441.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698494|gb|EDP88464.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|169654244|gb|EDS86937.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|184210057|gb|EDU07100.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|217395266|gb|EEC35284.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|237503358|gb|ACQ95676.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|238520270|gb|EEP83732.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|242140253|gb|EES26655.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|243061024|gb|EES43210.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|254219475|gb|EET08859.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
          Length = 165

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+ +VV+ TE  F +  CFA    SH+  C +  +C L  V   A  
Sbjct: 61  NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHR-SCVIQSACRLRGVFAAARE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELAQPASQLATLLG 145


>gi|328552565|gb|AEB23057.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens
           TA208]
 gi|328910965|gb|AEB62561.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens LL3]
          Length = 144

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 88/144 (61%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A   ++  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  LV+N+  I ++  +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLKS 144


>gi|16767613|ref|NP_463228.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56416158|ref|YP_153233.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161617637|ref|YP_001591602.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|162139505|ref|YP_219230.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167553785|ref|ZP_02347531.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168231405|ref|ZP_02656463.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168239662|ref|ZP_02664720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168245155|ref|ZP_02670087.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263280|ref|ZP_02685253.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449946|ref|YP_002048410.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470152|ref|ZP_03076136.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735133|ref|YP_002117308.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247528|ref|YP_002149281.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197365083|ref|YP_002144720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200387819|ref|ZP_03214431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927167|ref|ZP_03218369.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205355124|ref|YP_002228925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859512|ref|YP_002246163.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238910525|ref|ZP_04654362.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|81361477|sp|Q5PL57|NSRR_SALPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|81520811|sp|Q8ZKA3|NSRR_SALTY RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372261|sp|Q57GL3|NSRR_SALCH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030888|sp|A9N4Z2|NSRR_SALPB RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737674|sp|B5F393|NSRR_SALA4 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737675|sp|B5R0P4|NSRR_SALEP RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737676|sp|B5R9C4|NSRR_SALG2 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737677|sp|B4TFB2|NSRR_SALHS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737678|sp|B5BKI6|NSRR_SALPK RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737679|sp|B4TSF8|NSRR_SALSV RecName: Full=HTH-type transcriptional repressor nsrR
 gi|16422928|gb|AAL23187.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56130415|gb|AAV79921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161367001|gb|ABX70769.1| hypothetical protein SPAB_05500 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408250|gb|ACF68469.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456516|gb|EDX45355.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710635|gb|ACF89856.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197096560|emb|CAR62170.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211231|gb|ACH48628.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197287648|gb|EDY27039.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199604917|gb|EDZ03462.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323832|gb|EDZ09027.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274905|emb|CAR39972.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321871|gb|EDZ09710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205334382|gb|EDZ21146.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336063|gb|EDZ22827.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348036|gb|EDZ34667.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206711315|emb|CAR35693.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249457|emb|CBG27322.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996699|gb|ACY91584.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160855|emb|CBW20386.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320088794|emb|CBY98552.1| HTH-type transcriptional repressor nsrR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615529|gb|EFY12449.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618589|gb|EFY15478.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621998|gb|EFY18848.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627722|gb|EFY24513.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631029|gb|EFY27793.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637752|gb|EFY34453.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642416|gb|EFY39020.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644015|gb|EFY40563.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650483|gb|EFY46891.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653553|gb|EFY49881.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659738|gb|EFY55981.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662051|gb|EFY58267.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666200|gb|EFY62378.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672620|gb|EFY68731.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676050|gb|EFY72121.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680534|gb|EFY76572.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684572|gb|EFY80576.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192887|gb|EFZ78113.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197237|gb|EFZ82377.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201646|gb|EFZ86710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206160|gb|EFZ91122.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213168|gb|EFZ97970.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215542|gb|EGA00286.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323227830|gb|EGA11984.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229000|gb|EGA13129.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236388|gb|EGA20464.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238707|gb|EGA22759.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241842|gb|EGA25871.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248009|gb|EGA31946.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254660|gb|EGA38471.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258281|gb|EGA41958.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263573|gb|EGA47094.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265831|gb|EGA49327.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270275|gb|EGA53723.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326630282|gb|EGE36625.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332991178|gb|AEF10161.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 141

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138


>gi|308172925|ref|YP_003919630.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
           7]
 gi|307605789|emb|CBI42160.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
           7]
          Length = 144

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 88/144 (61%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A   ++  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  LV+N+  I ++  +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144


>gi|226953865|ref|ZP_03824329.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835348|gb|EEH67731.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 150

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I+ IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGLRLNPEAKSLKLGEIVRTLQGHQQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  ++++
Sbjct: 118 SLNQYTLGEVIQH 130


>gi|145297732|ref|YP_001140573.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850504|gb|ABO88825.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 157

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPQGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+R+    + + I  V++A E +    +C +     C +V  C L S L++A+NAF 
Sbjct: 61  KNGGIRMACTPETVNIGQVIRALEGNLDGIDCNSPV---CHIVSVCLLKSALKEAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+  Y+++ L+ NR  ++K+F
Sbjct: 118 AVMDSYTLQDLLANRDELQKVF 139


>gi|296112360|ref|YP_003626298.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
 gi|295920054|gb|ADG60405.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
 gi|326568908|gb|EGE18977.1| transcriptional regulator NsrR [Moraxella catarrhalis BC1]
          Length = 177

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL      I + ++V+ TE  FFV  CFA       L+    +T+ LRK     
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             V  Q ++ C++     +K++F
Sbjct: 121 LSV-GQPAMSCVISPACHLKQVF 142


>gi|294054903|ref|YP_003548561.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614236|gb|ADE54391.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 145

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y     +  + I ++AE   +S   + KI++ L   G +ET+RG+
Sbjct: 1   MELTSFTDYSLRVLIYLTHDRERLSSIDELAEFYGLSRHHVAKIVKRLADLGYLETLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL    + I I +V+K TE  F + EC   +    C + G C L   L  A + FF
Sbjct: 61  NGGLRLGAEPESINIAEVIKGTEPHFNLVECMGGASDTACMIDGHCKLKGALAVARSHFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L +YS+  +     S + +
Sbjct: 121 KHLAEYSLADVALTEDSSRAV 141


>gi|215512187|gb|ACJ68081.1| NsrR [Moraxella catarrhalis O35E]
 gi|215512191|gb|ACJ68084.1| NsrR [Moraxella catarrhalis 7169]
 gi|215512196|gb|ACJ68088.1| NsrR [Moraxella catarrhalis]
 gi|326561869|gb|EGE12204.1| transcriptional regulator NsrR [Moraxella catarrhalis 7169]
 gi|326563304|gb|EGE13571.1| transcriptional regulator NsrR [Moraxella catarrhalis 46P47B1]
 gi|326563419|gb|EGE13684.1| transcriptional regulator NsrR [Moraxella catarrhalis 12P80B1]
 gi|326565958|gb|EGE16119.1| transcriptional regulator NsrR [Moraxella catarrhalis 103P14B1]
 gi|326569208|gb|EGE19269.1| transcriptional regulator NsrR [Moraxella catarrhalis BC7]
 gi|326571881|gb|EGE21886.1| transcriptional regulator NsrR [Moraxella catarrhalis BC8]
 gi|326575393|gb|EGE25318.1| transcriptional regulator NsrR [Moraxella catarrhalis 101P30B1]
 gi|326577989|gb|EGE27853.1| transcriptional regulator NsrR [Moraxella catarrhalis O35E]
          Length = 177

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL      I + ++V+ TE  FFV  CFA       L+    +T+ LRK     
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             V  Q ++ C++     +K++F
Sbjct: 121 LSV-GQPAMSCVISPACHLKQVF 142


>gi|170741067|ref|YP_001769722.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168195341|gb|ACA17288.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
           4-46]
          Length = 157

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G++ T RGR
Sbjct: 1   MHLTRYTDYALRTLIYLGLREPQQSSIAEIARAYGISENHLTKVVHQLGRLGLIRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TEE   + ECFAS    C +  SC L   L +AL AF  
Sbjct: 61  GGGLRLGKPPSEIVVGAVVRQTEEDLALVECFASSA--CAITASCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLVRNRS 135
           VL  Y++  L+ + S
Sbjct: 119 VLDGYTLADLLEDGS 133


>gi|16763186|ref|NP_458803.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144665|ref|NP_808007.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052276|ref|ZP_03345154.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418156|ref|ZP_03351222.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428666|ref|ZP_03361416.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582913|ref|ZP_03364739.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213648975|ref|ZP_03379028.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852964|ref|ZP_03382496.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289811153|ref|ZP_06541782.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289829975|ref|ZP_06547426.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|81512227|sp|Q8Z183|NSRR_SALTI RecName: Full=HTH-type transcriptional repressor nsrR
 gi|25303603|pir||AG1049 conserved hypothetical protein yjeB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505494|emb|CAD06844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140304|gb|AAO71867.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 141

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138


>gi|84683690|ref|ZP_01011593.1| Transcriptional regulator [Maritimibacter alkaliphilus HTCC2654]
 gi|84668433|gb|EAQ14900.1| Transcriptional regulator [Rhodobacterales bacterium HTCC2654]
          Length = 147

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 73/128 (57%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+C ++ D   R S+IAEA   S   L +++  L + G VET RGR GG+ L R  + I+
Sbjct: 1   MFCGVNTDQTVRSSEIAEATNASGNHLSQVIHKLQQFGYVETRRGRGGGLMLARKPEAIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I  + +  E      ECF +   +CPL+ +C L + ++KAL+AF+  L + ++  LV++ 
Sbjct: 61  IGALFRDFEAEVPFTECFDAANNNCPLIETCRLNTYIKKALDAFYSELDEVTLADLVKDN 120

Query: 135 SSIKKIFN 142
             + ++ +
Sbjct: 121 CGLIELLD 128


>gi|167562509|ref|ZP_02355425.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
 gi|167569690|ref|ZP_02362564.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
          Length = 165

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+ +VV+ TE  F +  CFA    SH+  C +  +C L  V   A +
Sbjct: 61  NGGLRLNAQSAALTVGEVVRKTENDFALVGCFADESESHR-SCVIQSACRLKGVFAAARD 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELSQPASQLAALLG 145


>gi|146310026|ref|YP_001175100.1| transcriptional repressor NsrR [Enterobacter sp. 638]
 gi|189030886|sp|A4W5R9|NSRR_ENT38 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|145316902|gb|ABP59049.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
          Length = 141

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       ISQ+ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPAQSIRVGDVVRELEPLSLV-NCSSDF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|91795047|ref|YP_564698.1| hypothetical protein Sden_3702 [Shewanella denitrificans OS217]
 gi|91717049|gb|ABE56975.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           denitrificans OS217]
          Length = 151

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYGIR+LMY AI  +     RI +I +   +S   + KI+  L K G ++T+R
Sbjct: 1   MQLTRYTDYGIRILMYLAIQPERTELFRIGEITDVFDLSANHVAKIVNHLGKLGYLKTIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L   A  I +  +V+  E S     C   +   C     C L S+L KAL+A+
Sbjct: 61  GKHGGFKLVTSASDINLGTLVRQLENSLVQVNCAEPY---CRFTPVCNLKSMLAKALSAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL  Y +  ++ N   +
Sbjct: 118 LAVLDSYYLSDVIDNSDKL 136


>gi|193078481|gb|ABO13483.2| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
          Length = 158

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 118 SLDQYTLGEVLQQPKSA 134


>gi|117620851|ref|YP_855204.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562258|gb|ABK39206.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 155

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+R+    + + I  V++A E +    +C +     C +V  C L + L++A+NAF 
Sbjct: 61  KNGGIRMACAPETVNIGQVIRALEGNLDGIDCGSPA---CHIVSVCLLKNALKEAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+  Y+++ L+ NR  ++K+F
Sbjct: 118 AVMDSYTLQDLLANRDELQKVF 139


>gi|260557021|ref|ZP_05829238.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409627|gb|EEX02928.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 148

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYVARPSDTPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 121 SLDQYTLGEVLQQPKSA 137


>gi|300721495|ref|YP_003710770.1| hypothetical protein XNC1_0462 [Xenorhabdus nematophila ATCC 19061]
 gi|297627987|emb|CBJ88536.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 139

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSHLGLVNAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I DVV++ E    V  C A     C +  +C L SVL +A+  F 
Sbjct: 61  KNGGISLGKPAREIRIGDVVRSLEPLALV-NCSA-----CQITSACRLKSVLNQAVENFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  +V++ S + ++ 
Sbjct: 115 EELDKHTLADMVKDNSPLYQLL 136


>gi|213158841|ref|YP_002320839.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|215482177|ref|YP_002324359.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|301345004|ref|ZP_07225745.1| hypothetical protein AbauAB0_02147 [Acinetobacter baumannii AB056]
 gi|301512065|ref|ZP_07237302.1| hypothetical protein AbauAB05_10807 [Acinetobacter baumannii AB058]
 gi|301596098|ref|ZP_07241106.1| hypothetical protein AbauAB059_09799 [Acinetobacter baumannii
           AB059]
 gi|332853133|ref|ZP_08434570.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332868621|ref|ZP_08438277.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
 gi|213058001|gb|ACJ42903.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|213988893|gb|ACJ59192.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332728802|gb|EGJ60161.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332733298|gb|EGJ64492.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
          Length = 145

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 118 SLDQYTLGEVLQQPKSA 134


>gi|184159604|ref|YP_001847943.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|239503240|ref|ZP_04662550.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|332876089|ref|ZP_08443873.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6014059]
 gi|183211198|gb|ACC58596.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322509514|gb|ADX04968.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519534|gb|ADX93915.1| hypothetical protein ABTW07_3498 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735707|gb|EGJ66750.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6014059]
          Length = 145

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 118 SLDQYTLGEVLQQPKSA 134


>gi|206889263|ref|YP_002249119.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741201|gb|ACI20258.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 164

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +T+ TDY IR ++Y +   DY  R  +I++   I + FL KIL+ L K G+V+  RG 
Sbjct: 30  LQITRETDYAIRTVLYLSGKKDYSARAEEISQQMQIPKSFLRKILKQLEKVGLVQLKRGV 89

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L R   +IT+ DV+ A E++  +  C  + KI C L+  C +  V  K       
Sbjct: 90  SGGIKLLREPVEITLFDVIVAMEKAVALNRCVINDKI-CGLISHCPVHPVWFKVRERLIQ 148

Query: 121 VLTQYSIECLVRNRSS 136
            L +   + L +  +S
Sbjct: 149 ALQEIKFQELAKGAAS 164


>gi|169794588|ref|YP_001712381.1| hypothetical protein ABAYE0402 [Acinetobacter baumannii AYE]
 gi|169147515|emb|CAM85376.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 148

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L + +S+
Sbjct: 121 SLDQYTLGEVLQQPKSA 137


>gi|330831194|ref|YP_004394146.1| Rrf2 family protein [Aeromonas veronii B565]
 gi|328806330|gb|AEB51529.1| Rrf2 family protein [Aeromonas veronii B565]
          Length = 156

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYGVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG+R+ C PA  I I  V++A E +    +C +     C +V  C L S L++A++AF
Sbjct: 61  KNGGIRMACDPA-TINIGQVIRALEGNLDGIDCGSPA---CHIVSVCLLKSALKEAMDAF 116

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             V+  Y+++ L+ NR  ++++F
Sbjct: 117 LAVMDSYTLQDLLANRDELQRVF 139


>gi|326576519|gb|EGE26427.1| transcriptional regulator NsrR [Moraxella catarrhalis CO72]
          Length = 177

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 31/169 (18%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---------------------- 96
           G+ GG+RL      I + ++V+ TE  FFV  CFA                         
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDDVMADNLIKIKTLD 120

Query: 97  -------IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
                  + C +  +C L  V  +A  AF  VL  Y++  ++ N   ++
Sbjct: 121 LSVGQPALSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELR 169


>gi|301167694|emb|CBW27277.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 143

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IRVLMY  I+++     ++I+ A  IS   L KI+  L K   +++ +G 
Sbjct: 1   MKLTTYTDYSIRVLMYLGINSERLCTSTEISAAYGISRNHLSKIIHQLSKLKYIQSYKGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG+ L      I +  +++  E  F + ECF    +  C +  SC L S+L  +L  F 
Sbjct: 61  SGGITLLEKPKNINLRKLIEQVEPDFDIVECFNQDSVFPCKITPSCKLKSILNSSLIEFL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L +Y++  ++ N+  +K
Sbjct: 121 KNLEKYTLADIIENKDELK 139


>gi|237729111|ref|ZP_04559592.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
 gi|226908840|gb|EEH94758.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
          Length = 141

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPAKDIGIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEKNQPLYKLL 138


>gi|126738163|ref|ZP_01753884.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
 gi|126720660|gb|EBA17365.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
          Length = 151

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 73/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ A H D      +IA+   +    L KI Q L   G VE++RGR
Sbjct: 1   MQISKFSDYALRILIHLATHEDGLMSTREIAQMQKLPFNHLAKISQWLTHEGYVESLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P + I+I  +++ +E    + EC       C +  +CGL  +L +A   FF 
Sbjct: 61  NGGMRLALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILNEAQEMFFT 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   ++  ++     ++ +  A
Sbjct: 121 TLDSKTLHDVLSGNGGMRNLLRA 143


>gi|163742862|ref|ZP_02150246.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161383826|gb|EDQ08211.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
          Length = 151

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 74/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ + H +      +IAE   +    L KI Q L   G VE+VRGR
Sbjct: 1   MQISKFSDYALRILIHLSTHEEGLMSTREIAEMQKLPFNHLAKISQWLTHEGYVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+  P + I+I  +++ +E    + EC       C +  +CGL  +L +A   FF 
Sbjct: 61  NGGMRMALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILTEAQEVFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   +++ ++     +K +  A
Sbjct: 121 ALDSKTLQNVLEGNRGMKNLIRA 143


>gi|154243891|ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154163013|gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 145

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R LM+ A   +      +IA+A  IS   L K+++ L  AG+V T RG 
Sbjct: 1   MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R AD IT+ ++V+  E    + ECF +    C L   C L   L+ A  AF  
Sbjct: 61  GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120

Query: 121 VLTQYSI-EC 129
            L + ++ EC
Sbjct: 121 ELDRTTLAEC 130


>gi|296115761|ref|ZP_06834387.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977738|gb|EFG84490.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 151

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 6/136 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R L Y  +H D    I ++A A  ISE  L K++  L + G ++T+RGR GG+ L R A
Sbjct: 1   MRTLFYVGLHTDRRVSIREVANAYGISENHLVKVIHKLGRGGFIQTMRGRGGGLTLARAA 60

Query: 71  DQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           D+I I DVV+ TEE   +  C  +  +D   C L   C L  +L +A++AF  VL   ++
Sbjct: 61  DEIRIGDVVRYTEEDMNLVACEPT-TVDGRSCVLARHCRLRGLLGQAIDAFMMVLDGATL 119

Query: 128 ECLVRNRSSI--KKIF 141
             L+ +   +  ++IF
Sbjct: 120 GSLLTDEDCVVLRQIF 135


>gi|296446526|ref|ZP_06888469.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296256022|gb|EFH03106.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 144

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R L+  A   D     + IA+   +S   + K+LQ L  +G VE +RG 
Sbjct: 1   MKLTTFTDFGLRALILLASRKDEVLSAAAIADYFSVSRHHMAKVLQELAASGYVEGIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GGVRL +    I + DVV++ ++   + +CF     DC L+  C L  +L  A   F  
Sbjct: 61  QGGVRLAKDPRDIRVGDVVRSLDKEQALVDCFRDGWNDCALLPRCRLKGMLANAQQGFLR 120

Query: 121 VLTQYSI-ECLVRNR-SSIKKI 140
            L +++I +CL +   +SI K+
Sbjct: 121 ELDRFTISDCLEKTEAASIPKL 142


>gi|307823007|ref|ZP_07653237.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
 gi|307735782|gb|EFO06629.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
          Length = 151

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +R+L+Y A +       I +IAE   IS   L K+   L   G + T RG
Sbjct: 1   MQLTQFTDLSLRLLIYLARLPEPGMATIQEIAEYHQISRNHLVKVANSLANQGFIMTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG++L RPA  I + +VV+ TE +  + ECF +    C L+ +C L + L +A  AF 
Sbjct: 61  KGGGIQLARPAYTIGVGEVVRRTELNMNLVECFDAPTNQCRLIRNCFLKATLYEAQRAFM 120

Query: 120 DVLTQYSI 127
            VL +Y++
Sbjct: 121 TVLDKYTL 128


>gi|212709958|ref|ZP_03318086.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
           30120]
 gi|212687367|gb|EEB46895.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
           30120]
          Length = 142

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y  A+       I+Q+ E   +S   + KI+  L   G V+  RG
Sbjct: 3   VQLTSFTDYGLRALIYLAALEKGQMTSITQVTEVYGVSRNHMVKIINQLSHLGYVKATRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA+ I I DVV+A E    V  C       C +  +C L   L+KA+  F 
Sbjct: 63  KNGGIALGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGALQKAIQQFL 118

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V++ S + ++ 
Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140


>gi|209696175|ref|YP_002264105.1| transcriptional repressor NsrR [Aliivibrio salmonicida LFI1238]
 gi|226736212|sp|B6EMP9|NSRR_ALISL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|208010128|emb|CAQ80453.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 141

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       I+ + E   +S   + KI+  L + G ++TVRG
Sbjct: 1   MQLTNFTDFGLRALIYLASLPKGELTSITVVTETFDVSRNHMVKIINKLGQEGFIKTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L RPADQI I +V+++  E F +  C       C +  +C L + L KA  AF 
Sbjct: 61  KNGGICLGRPADQIIIGEVIRSI-EPFNIVNCAPEF---CHITPACRLKTALAKAKQAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L Q++I+ ++   + +
Sbjct: 117 DELDQHTIQDMLTENNEL 134


>gi|90414467|ref|ZP_01222443.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
 gi|161936286|ref|YP_131442.2| transcriptional repressor NsrR [Photobacterium profundum SS9]
 gi|119372260|sp|Q6LM38|NSRR_PHOPR RecName: Full=HTH-type transcriptional repressor nsrR
 gi|90324472|gb|EAS41031.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
          Length = 144

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V+TVRG
Sbjct: 1   MQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117
           + GG+RL  PA++I + DVV+ATE    V  +E F      C +  +C L  +L  A +A
Sbjct: 61  KNGGIRLGMPANRIILGDVVRATEPLQIVNCSEDF------CHITPACQLKGILASARSA 114

Query: 118 FFDVLTQYSIECLVRNRSSI 137
           F   L ++++  L+ N   +
Sbjct: 115 FLAELDKHTLLSLIDNNPPL 134


>gi|90407535|ref|ZP_01215717.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
 gi|90311345|gb|EAS39448.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
          Length = 149

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 11/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT  TDYG+R L+Y AI    P      IS +A    +S   + K++  L K G ++ 
Sbjct: 1   MQLTTFTDYGLRTLIYLAI---LPKGELADISSVANIYNVSRNHMVKVISKLSKLGYIDA 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           VRG+ GG+RL   A +I + DV++   ES  +  C A     C +VG+C L  VL  A N
Sbjct: 58  VRGKNGGIRLGIDAHKIFLGDVIQ-NMESMNIVNCNAGF---CHIVGACQLKGVLASATN 113

Query: 117 AFFDVLTQYSIECLVRNR 134
           AF   L +++I  LV + 
Sbjct: 114 AFLAELNKHTILSLVEDN 131


>gi|270265005|ref|ZP_06193268.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040939|gb|EFA14040.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 141

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I + DVV+A E    V  C +     C +  +C L  VL + +  F 
Sbjct: 61  KNGGIRLGKPAETIRLGDVVRALEPLSLV-NCNSDF---CHITPACRLKQVLHQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V +   + K+ 
Sbjct: 117 EELDSHTLADMVEDNPPLYKLL 138


>gi|300021837|ref|YP_003754448.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523658|gb|ADJ22127.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 165

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T + IR+L+ C + ND   +++ +++   +++  +FKI+  L  AG +  VRG 
Sbjct: 1   MRLTKQTGHAIRILIDCTLANDELVKVADVSDRLGVTKQNVFKIVHILSHAGFLSAVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I I DVV+A E +    E     K +D        + ++   AL+AF 
Sbjct: 61  NGGVRLAKPATSIKIGDVVRAIEVTRVQVEGGRGRKTVDND---PASINAMFDDALSAFI 117

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL Q+++  L   +S +
Sbjct: 118 SVLDQHTLAELASQKSPL 135


>gi|330445010|ref|ZP_08308664.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493128|dbj|GAA03161.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 143

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G VETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELASITKVTETYNVSRNHMVKIINKLGQLGYVETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  PA  I + DVV+A  E   +  C A     C +  +C L  +L  A  AF 
Sbjct: 61  KNGGIRLGMPASTIIVGDVVRAI-EPLQIVNCSADF---CHITPACRLKGILANAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L  +++  LV + + +  + N+
Sbjct: 117 AELDNHTLLSLVEDNAPLLDLLNS 140


>gi|149202404|ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035]
 gi|149144502|gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035]
          Length = 148

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   D     +++A    +S   L KI+Q L +AG+++T RG 
Sbjct: 1   MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + DV++  E    +  CF +   +C L G C L + L+ A  AF D
Sbjct: 61  GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 DLDRSTL 127


>gi|56965514|ref|YP_177247.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911759|dbj|BAD66286.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 153

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDY +R L+Y  ++ +    ++  IA    IS   L K++  L + G++ T+RG
Sbjct: 3   IQLTTYTDYALRALLYVGSLPDGERTQVKDIASVYNISLNHLQKVIHDLGRKGVLHTIRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L      I I  +V+  E+   V ECF  +  +C +  SC L   L KA +AFF
Sbjct: 63  KHGGIALAHKPVDINIGKLVRELEDVQLV-ECFRDNN-NCLISNSCKLKEALAKAQHAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QYS+   + N++ +  +F
Sbjct: 121 QVLDQYSLADFLENKADLYALF 142


>gi|308446118|ref|XP_003087101.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
 gi|308262503|gb|EFP06456.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
          Length = 271

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A   D P  I++IAE   +SE  L KI+  + K G + T RG+
Sbjct: 1   MQLNKFTDYALRILMYIAPPKDVPYTIAEIAEDLHVSENHLVKIVHFMGKQGWLITTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     +  +  +V+  +    + EC   +   C L   CGL  +L +A+  F+ 
Sbjct: 61  GGGLRLNPDILEFRLGHIVRILQRDAQIVEC---NTPPCVLRPRCGLKGILDQAVEQFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L  Y++  ++       KI N+
Sbjct: 118 SLDHYTVADVLNAPPQHPKIVNS 140


>gi|330991657|ref|ZP_08315608.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329761676|gb|EGG78169.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 153

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           TDY +R L+Y  +H D    I +IA+A  ISE  L K++  L + G+++  RGR GG+ L
Sbjct: 3   TDYALRTLLYMGLHADRRVSIHEIADAYDISENHLVKVIHRLSRLGLIDARRGRGGGLVL 62

Query: 67  CRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
               + I I DVV+ TE+   +  C  ++     C L   C L   L +AL+AF  VL +
Sbjct: 63  AHAPEDIRIGDVVRKTEDDMRLVSCEPANPEGAGCILSDMCKLRGALAQALDAFMKVLDE 122

Query: 125 YSIECLVRNRS 135
            ++  L+ +  
Sbjct: 123 TTLADLLPDHD 133


>gi|320173668|gb|EFW48858.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella
           dysenteriae CDC 74-1112]
          Length = 141

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V+ C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLVS-CSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|299768660|ref|YP_003730686.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
 gi|298698748|gb|ADI89313.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
          Length = 145

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPDALNCNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L +++S+
Sbjct: 118 SLDQYTLGEVLQQSKSA 134


>gi|197287183|ref|YP_002153055.1| transcriptional repressor NsrR [Proteus mirabilis HI4320]
 gi|226737673|sp|B4F272|NSRR_PROMH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|194684670|emb|CAR46611.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 142

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L   G VE +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + +VV+A E    V  C A     C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAADIIVGEVVRALEPLSLV-NCSAEF---CHITPACRLKLVLNQAIEQFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L ++++  LV N S + K+ 
Sbjct: 117 KELDRHTLAELVENNSPLYKLL 138


>gi|56461491|ref|YP_156772.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
           L2TR]
 gi|56180501|gb|AAV83223.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
           loihiensis L2TR]
          Length = 150

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K TDYG+RVLMY A   D     I +++    +    L K++  L K G++ET RG
Sbjct: 1   MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLGKEGLIETRRG 60

Query: 60  RRGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L   PAD I +  V++  E   +  +C   HK +C +   C L  V+ +    F
Sbjct: 61  KNGGFLLAIEPAD-IRLDKVIRRLEGDEYWVDC---HKPECAIFPVCELKHVINQGKETF 116

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
           +D L  Y++  LV N + I++ +
Sbjct: 117 YDFLAGYTLASLVSNDAQIREFW 139


>gi|85704358|ref|ZP_01035461.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
 gi|85671678|gb|EAQ26536.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
          Length = 156

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57
           M LTK TDY +RVL+Y A     P +++ I E      IS   L K++  L+  G +E V
Sbjct: 1   MRLTKFTDYSLRVLLYAATLK--PKQLTTIEETSNLYGISRAHLKKVVLGLIHEGFLEGV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG RL  PA +I +  +++ TE  F +AECF      C +   C L  VL  AL+ 
Sbjct: 59  RGRSGGFRLAMPAHEINLGQLLRKTEPDFALAECFLPENA-CRVTKGCRLPIVLNLALSN 117

Query: 118 FFDVLTQYSI 127
           F      +++
Sbjct: 118 FLKTFDDFTL 127


>gi|224824735|ref|ZP_03697842.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224603228|gb|EEG09404.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 153

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RVLMY      D P  I +IAE   +S   L K++  + + G + T RG
Sbjct: 1   MQLTRFTDLGLRVLMYLTHRERDTPVTIPEIAERFAVSRNHLVKVVHFMAQQGWLVTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L RPAD   + DV++  E    + +C    +  C L   C L S L   L AFF
Sbjct: 61  KGGGLALARPADHYRLGDVIRTLEGMSDLIDCA---EPPCALRSGCQLKSALDVGLTAFF 117

Query: 120 DVLTQYSIECLV 131
           + L ++++   V
Sbjct: 118 EALNRFTLASAV 129


>gi|237806924|ref|YP_002891364.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237499185|gb|ACQ91778.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 151

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A+  D   + I+++A+   IS   + KI+  L   G ++T+RG
Sbjct: 1   MQLTLFTDYALRTLVFLALQPDQQLSTITEVADRFSISRNHVVKIVHQLGMKGYIDTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + +++   E    + +C    +  C L   C   +++RKA+ AF 
Sbjct: 61  KHGGIRLARSARDINLGNLIADMENVSCLLDC---QREGCRLAPGCRFQAIMRKAMRAFM 117

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL+++++  LVR+   +
Sbjct: 118 GVLSEFTLADLVRDEEQM 135


>gi|187731546|ref|YP_001882869.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
 gi|226737680|sp|B2TY53|NSRR_SHIB3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|187428538|gb|ACD07812.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
          Length = 141

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|168751471|ref|ZP_02776493.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754748|ref|ZP_02779755.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168766456|ref|ZP_02791463.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774110|ref|ZP_02799117.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780609|ref|ZP_02805616.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4076]
 gi|195935968|ref|ZP_03081350.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808424|ref|ZP_03250761.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812580|ref|ZP_03253909.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819958|ref|ZP_03260278.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397401|ref|YP_002273720.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4115]
 gi|254796197|ref|YP_003081034.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14359]
 gi|226736214|sp|B5Z2I4|NSRR_ECO5E RecName: Full=HTH-type transcriptional repressor nsrR
 gi|187770187|gb|EDU34031.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014508|gb|EDU52630.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001762|gb|EDU70748.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357816|gb|EDU76235.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363933|gb|EDU82352.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4486]
 gi|208728225|gb|EDZ77826.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733857|gb|EDZ82544.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740081|gb|EDZ87763.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158801|gb|ACI36234.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750226|gb|ACI73420.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|254595597|gb|ACT74958.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
           str. TW14359]
          Length = 141

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGLMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|167619786|ref|ZP_02388417.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
 gi|257138937|ref|ZP_05587199.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+  VV+ TE  F +  CF     +H+ +C +  +C L  V   A  
Sbjct: 61  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELAQPASQLSMLLG 145


>gi|293610818|ref|ZP_06693118.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827162|gb|EFF85527.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 145

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSI-ECLVRNRSS 136
            L QY++ E L +++S+
Sbjct: 118 SLDQYTLGEVLQQSKSA 134


>gi|325919608|ref|ZP_08181620.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
           ATCC 19865]
 gi|325549944|gb|EGD20786.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
           ATCC 19865]
          Length = 152

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARGDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A +IT++++V+A E    + EC   H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASEITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 121 ALRRVTLAQMLQ 132


>gi|167581669|ref|ZP_02374543.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
          Length = 165

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+  VV+ TE  F +  CF     +H+ +C +  +C L  V   A  
Sbjct: 61  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 120 AFFAELDKHTIGELAQPASQLSMLLG 145


>gi|15804767|ref|NP_290808.1| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933]
 gi|15834408|ref|NP_313181.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           Sakai]
 gi|16132000|ref|NP_418599.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24115533|ref|NP_710043.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 301]
 gi|26251070|ref|NP_757110.1| transcriptional repressor NsrR [Escherichia coli CFT073]
 gi|30065550|ref|NP_839721.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T]
 gi|74314663|ref|YP_313082.1| transcriptional repressor NsrR [Shigella sonnei Ss046]
 gi|82546581|ref|YP_410528.1| transcriptional repressor NsrR [Shigella boydii Sb227]
 gi|82779440|ref|YP_405789.1| transcriptional repressor NsrR [Shigella dysenteriae Sd197]
 gi|89110898|ref|AP_004678.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|91213727|ref|YP_543713.1| transcriptional repressor NsrR [Escherichia coli UTI89]
 gi|110644535|ref|YP_672265.1| transcriptional repressor NsrR [Escherichia coli 536]
 gi|110808096|ref|YP_691616.1| transcriptional repressor NsrR [Shigella flexneri 5 str. 8401]
 gi|117626524|ref|YP_859847.1| transcriptional repressor NsrR [Escherichia coli APEC O1]
 gi|168760419|ref|ZP_02785426.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168784814|ref|ZP_02809821.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC869]
 gi|168801832|ref|ZP_02826839.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC508]
 gi|170083624|ref|YP_001732944.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680746|ref|YP_001746573.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
 gi|191165643|ref|ZP_03027483.1| transcriptional repressor NsrR [Escherichia coli B7A]
 gi|191170792|ref|ZP_03032344.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|191174524|ref|ZP_03036022.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|193066007|ref|ZP_03047065.1| transcriptional repressor NsrR [Escherichia coli E22]
 gi|193070883|ref|ZP_03051815.1| transcriptional repressor NsrR [Escherichia coli E110019]
 gi|194426693|ref|ZP_03059247.1| transcriptional repressor NsrR [Escherichia coli B171]
 gi|194434604|ref|ZP_03066861.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
 gi|215489522|ref|YP_002331953.1| transcriptional repressor NsrR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217325196|ref|ZP_03441280.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218561337|ref|YP_002394250.1| transcriptional repressor NsrR [Escherichia coli S88]
 gi|218692512|ref|YP_002400724.1| transcriptional repressor NsrR [Escherichia coli ED1a]
 gi|218697927|ref|YP_002405594.1| transcriptional repressor NsrR [Escherichia coli 55989]
 gi|218702875|ref|YP_002410504.1| transcriptional repressor NsrR [Escherichia coli IAI39]
 gi|218707789|ref|YP_002415308.1| transcriptional repressor NsrR [Escherichia coli UMN026]
 gi|227886779|ref|ZP_04004584.1| transcriptional repressor NsrR [Escherichia coli 83972]
 gi|238903285|ref|YP_002929081.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|256019823|ref|ZP_05433688.1| transcriptional repressor NsrR [Shigella sp. D9]
 gi|256025113|ref|ZP_05438978.1| transcriptional repressor NsrR [Escherichia sp. 4_1_40B]
 gi|260847008|ref|YP_003224786.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|260858331|ref|YP_003232222.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|260870914|ref|YP_003237316.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|261225298|ref|ZP_05939579.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255450|ref|ZP_05947983.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285590|ref|YP_003502408.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402805|ref|ZP_06646902.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
 gi|293407905|ref|ZP_06651745.1| transcriptional repressor NsrR [Escherichia coli B354]
 gi|293417681|ref|ZP_06660303.1| transcriptional repressor NsrR [Escherichia coli B185]
 gi|293476489|ref|ZP_06664897.1| transcriptional repressor NsrR [Escherichia coli B088]
 gi|298378335|ref|ZP_06988219.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
 gi|301028000|ref|ZP_07191284.1| Rrf2 family protein [Escherichia coli MS 196-1]
 gi|306815607|ref|ZP_07449756.1| transcriptional repressor NsrR [Escherichia coli NC101]
 gi|307140872|ref|ZP_07500228.1| transcriptional repressor NsrR [Escherichia coli H736]
 gi|309787682|ref|ZP_07682293.1| rrf2 family protein [Shigella dysenteriae 1617]
 gi|312974014|ref|ZP_07788185.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|331644925|ref|ZP_08346042.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
 gi|331650303|ref|ZP_08351375.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
 gi|331656006|ref|ZP_08356994.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
 gi|331660753|ref|ZP_08361685.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
 gi|331665842|ref|ZP_08366736.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
 gi|331671083|ref|ZP_08371916.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
 gi|331671327|ref|ZP_08372125.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
 gi|331680308|ref|ZP_08380967.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
 gi|331681197|ref|ZP_08381834.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
 gi|84028053|sp|P0AF65|NSRR_ECO57 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028054|sp|P0AF64|NSRR_ECOL6 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028055|sp|P0AF63|NSRR_ECOLI RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028056|sp|P0AF66|NSRR_SHIFL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372258|sp|Q0T9L5|NSRR_ECOL5 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372259|sp|Q1R382|NSRR_ECOUT RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372262|sp|Q31TA8|NSRR_SHIBS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372263|sp|Q328F7|NSRR_SHIDS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372264|sp|Q3YUG5|NSRR_SHISS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|122956960|sp|Q0SXA4|NSRR_SHIF8 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030884|sp|A1AJ83|NSRR_ECOK1 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736213|sp|B7MLI3|NSRR_ECO45 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736215|sp|B7NTN4|NSRR_ECO7I RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736775|sp|B1XDS9|NSRR_ECODH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737668|sp|B7NGB2|NSRR_ECOLU RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737670|sp|B1LQJ8|NSRR_ECOSM RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768044|sp|B7UQI7|NSRR_ECO27 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768045|sp|B7LC37|NSRR_ECO55 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768046|sp|B7MSJ6|NSRR_ECO81 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|259514607|sp|C4ZR55|NSRR_ECOBW RecName: Full=HTH-type transcriptional repressor nsrR
 gi|12519166|gb|AAG59374.1|AE005651_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111502|gb|AAN83684.1|AE016771_195 Hypothetical protein yjeB [Escherichia coli CFT073]
 gi|537019|gb|AAA97074.1| yjeB [Escherichia coli str. K-12 substr. MG1655]
 gi|912442|dbj|BAA01776.1| ORF-1 [Shigella flexneri]
 gi|1790621|gb|AAC77135.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364631|dbj|BAB38577.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054861|gb|AAN45750.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043814|gb|AAP19533.1| hypothetical protein S4601 [Shigella flexneri 2a str. 2457T]
 gi|73858140|gb|AAZ90847.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81243588|gb|ABB64298.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81247992|gb|ABB68700.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|85676929|dbj|BAE78179.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|91075301|gb|ABE10182.1| hypothetical protein UTI89_C4778 [Escherichia coli UTI89]
 gi|110346127|gb|ABG72364.1| putative transcriptional regulator YjeB [Escherichia coli 536]
 gi|110617644|gb|ABF06311.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515648|gb|ABJ03723.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|169891459|gb|ACB05166.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170518464|gb|ACB16642.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
 gi|189368884|gb|EDU87300.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374986|gb|EDU93402.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC869]
 gi|189376056|gb|EDU94472.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904338|gb|EDV64047.1| transcriptional repressor NsrR [Escherichia coli B7A]
 gi|190905204|gb|EDV64845.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|190909016|gb|EDV68603.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|192926330|gb|EDV80966.1| transcriptional repressor NsrR [Escherichia coli E22]
 gi|192955829|gb|EDV86300.1| transcriptional repressor NsrR [Escherichia coli E110019]
 gi|194415432|gb|EDX31700.1| transcriptional repressor NsrR [Escherichia coli B171]
 gi|194417189|gb|EDX33301.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
 gi|209750218|gb|ACI73416.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750220|gb|ACI73417.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750222|gb|ACI73418.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750224|gb|ACI73419.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|215267594|emb|CAS12049.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321417|gb|EEC29841.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354659|emb|CAV01655.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
 gi|218368106|emb|CAR05913.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218372861|emb|CAR20741.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
 gi|218430076|emb|CAR10921.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
 gi|218434886|emb|CAR15824.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
 gi|222035948|emb|CAP78693.1| HTH-type transcriptional repressor nsrR [Escherichia coli LF82]
 gi|227836352|gb|EEJ46818.1| transcriptional repressor NsrR [Escherichia coli 83972]
 gi|238862328|gb|ACR64326.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|257756980|dbj|BAI28482.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257762155|dbj|BAI33652.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|257767270|dbj|BAI38765.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|260450995|gb|ACX41417.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1]
 gi|281181274|dbj|BAI57604.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281603640|gb|ADA76624.1| HTH-type transcriptional repressor nsrR [Shigella flexneri 2002017]
 gi|284924360|emb|CBG37476.1| transcriptional repressor [Escherichia coli 042]
 gi|290765463|gb|ADD59424.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320942|gb|EFE60384.1| transcriptional repressor NsrR [Escherichia coli B088]
 gi|291429720|gb|EFF02734.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
 gi|291430399|gb|EFF03397.1| transcriptional repressor NsrR [Escherichia coli B185]
 gi|291472156|gb|EFF14638.1| transcriptional repressor NsrR [Escherichia coli B354]
 gi|294490746|gb|ADE89502.1| transcriptional repressor NsrR [Escherichia coli IHE3034]
 gi|298280669|gb|EFI22170.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
 gi|299878910|gb|EFI87121.1| Rrf2 family protein [Escherichia coli MS 196-1]
 gi|305851269|gb|EFM51724.1| transcriptional repressor NsrR [Escherichia coli NC101]
 gi|307556345|gb|ADN49120.1| putative transcriptional regulator YjeB [Escherichia coli ABU
           83972]
 gi|307629250|gb|ADN73554.1| transcriptional repressor NsrR [Escherichia coli UM146]
 gi|308924432|gb|EFP69928.1| rrf2 family protein [Shigella dysenteriae 1617]
 gi|310331548|gb|EFP98804.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|312948827|gb|ADR29654.1| transcriptional repressor NsrR [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313646347|gb|EFS10809.1| rrf2 family protein [Shigella flexneri 2a str. 2457T]
 gi|315138732|dbj|BAJ45891.1| transcriptional repressor NsrR [Escherichia coli DH1]
 gi|315617591|gb|EFU98197.1| rrf2 family protein [Escherichia coli 3431]
 gi|320180691|gb|EFW55618.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella boydii
           ATCC 9905]
 gi|320187056|gb|EFW61767.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella flexneri
           CDC 796-83]
 gi|320190690|gb|EFW65340.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320193558|gb|EFW68195.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           WV_060327]
 gi|320200692|gb|EFW75278.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           EC4100B]
 gi|320638936|gb|EFX08582.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           G5101]
 gi|320644305|gb|EFX13370.1| transcriptional repressor NsrR [Escherichia coli O157:H- str.
           493-89]
 gi|320649623|gb|EFX18147.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. H
           2687]
 gi|320655019|gb|EFX22980.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660526|gb|EFX27987.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665795|gb|EFX32832.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156005|gb|EFZ42167.1| rrf2 family protein [Escherichia coli EPECa14]
 gi|323161967|gb|EFZ47839.1| rrf2 family protein family protein [Escherichia coli E128010]
 gi|323166661|gb|EFZ52419.1| rrf2 family protein [Shigella sonnei 53G]
 gi|323176063|gb|EFZ61655.1| rrf2 family protein family protein [Escherichia coli 1180]
 gi|323189943|gb|EFZ75221.1| rrf2 family protein family protein [Escherichia coli RN587/1]
 gi|323935408|gb|EGB31752.1| transcriptional regulator [Escherichia coli E1520]
 gi|323940097|gb|EGB36291.1| transcriptional regulator [Escherichia coli E482]
 gi|323950753|gb|EGB46631.1| transcriptional regulator [Escherichia coli H252]
 gi|323955465|gb|EGB51229.1| transcriptional regulator [Escherichia coli H263]
 gi|323965564|gb|EGB61018.1| transcriptional regulator [Escherichia coli M863]
 gi|323975481|gb|EGB70582.1| transcriptional regulator [Escherichia coli TW10509]
 gi|326345490|gb|EGD69233.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. 1125]
 gi|326346653|gb|EGD70387.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. 1044]
 gi|327250118|gb|EGE61837.1| rrf2 family protein family protein [Escherichia coli STEC_7v]
 gi|330908520|gb|EGH37039.1| nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           AA86]
 gi|331035900|gb|EGI08138.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
 gi|331040697|gb|EGI12855.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
 gi|331046360|gb|EGI18450.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
 gi|331051795|gb|EGI23834.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
 gi|331056893|gb|EGI28887.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
 gi|331061672|gb|EGI33598.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
 gi|331071172|gb|EGI42529.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
 gi|331071771|gb|EGI43107.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
 gi|331081418|gb|EGI52579.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
 gi|332083175|gb|EGI88406.1| rrf2 family protein family protein [Shigella boydii 5216-82]
 gi|332083816|gb|EGI89034.1| rrf2 family protein family protein [Shigella dysenteriae 155-74]
 gi|332087072|gb|EGI92206.1| rrf2 family protein family protein [Shigella boydii 3594-74]
 gi|332346255|gb|AEE59589.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749054|gb|EGJ79477.1| rrf2 family protein family protein [Shigella flexneri K-671]
 gi|332749323|gb|EGJ79744.1| rrf2 family protein family protein [Shigella flexneri 4343-70]
 gi|332761860|gb|EGJ92134.1| rrf2 family protein family protein [Shigella flexneri 2747-71]
 gi|332763226|gb|EGJ93469.1| nsrR [Shigella flexneri 2930-71]
 gi|333009143|gb|EGK28599.1| rrf2 family protein family protein [Shigella flexneri K-218]
 gi|333011981|gb|EGK31366.1| rrf2 family protein family protein [Shigella flexneri K-304]
          Length = 141

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|83721287|ref|YP_442725.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|83655112|gb|ABC39175.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 180

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 16  MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL   +  +T+  VV+ TE  F +  CF     +H+ +C +  +C L  V   A  
Sbjct: 76  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHR-NCVIQSACRLKGVFAAARE 134

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           AFF  L +++I  L +  S +  +  
Sbjct: 135 AFFAELDKHTIGELAQPASQLSMLLG 160


>gi|194445441|ref|YP_002043622.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195873714|ref|ZP_02698652.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197265870|ref|ZP_03165944.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243076|ref|YP_002218251.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205358148|ref|ZP_02576074.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205360093|ref|ZP_02834507.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224586207|ref|YP_002640006.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62130446|gb|AAX68149.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194404104|gb|ACF64326.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632977|gb|EDX51431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197244125|gb|EDY26745.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937592|gb|ACH74925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205327229|gb|EDZ13993.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205341100|gb|EDZ27864.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470735|gb|ACN48565.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312915465|dbj|BAJ39439.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222667|gb|EFX47739.1| Nitrite-sensitive transcriptional repressor NsrR [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322717315|gb|EFZ08886.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132705|gb|ADX20135.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 162

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 22  VQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 82  KNGGIRLGKPANTICIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 137

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 138 KELDNYTLADLVEENQPLYKLL 159


>gi|333010327|gb|EGK29760.1| rrf2 family protein family protein [Shigella flexneri VA-6]
          Length = 141

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|333011161|gb|EGK30575.1| rrf2 family protein family protein [Shigella flexneri K-272]
 gi|333012645|gb|EGK32025.1| rrf2 family protein family protein [Shigella flexneri K-227]
          Length = 141

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A+  +     IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMALLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|262377318|ref|ZP_06070542.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307771|gb|EEY88910.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 146

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A   D P  I+++AE   +S+    KI+  + K   + T RG+
Sbjct: 1   MQLNKFTDYALRILMYVAQPRDLPYTIAELAERLQVSQNHAMKIVHFMAKQDWLITTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + +  + +  +V+  +    V EC   +   C L  +CGL  +L  A+  F+ 
Sbjct: 61  GGGIRLNQASLNLQLGQIVRILQRDSNVVEC---NSPPCVLRPTCGLKGILDDAVEQFYS 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY ++ ++  R++
Sbjct: 118 SLDQYVLKDVITPRNT 133


>gi|294679131|ref|YP_003579741.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|294477947|gb|ADE87334.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 166

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L+Y A   +    I ++AE   IS   + K++  L + G + + +GR
Sbjct: 1   MRLTTFTDYALRLLIYTAGKPESRVTIDEVAEWFAISRAHVKKVVLTLSRGGFLLSSKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + +V+ ATE  F + EC+ +   +C +   C L +V  +AL AF  
Sbjct: 61  NGGFTLARPPGEINLSEVILATEPDFGLFECYLTGN-ECRISRPCRLPNVANEALAAFLA 119

Query: 121 VLTQYSI 127
           VL +Y++
Sbjct: 120 VLGKYTL 126


>gi|187478523|ref|YP_786547.1| hypothetical protein BAV2031 [Bordetella avium 197N]
 gi|115423109|emb|CAJ49640.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 145

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D    ++  +IAE   IS   L K++  + + G V   R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDREKAVTIPEIAERFAISRNHLVKVVHFMSQQGWVAATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ L RPA    + D+++  E    + +C    +  C L G C L  VL  +L  F
Sbjct: 61  GKGGGLALARPAASYRLGDLLRVLEHQGSLVDCA---EPPCALQGVCRLAGVLNDSLRGF 117

Query: 119 FDVLTQYSIECLV 131
           +D L Q+S+  LV
Sbjct: 118 YDSLNQHSLAELV 130


>gi|262373529|ref|ZP_06066807.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311282|gb|EEY92368.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 150

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  ++ P  I+ IA+   +S+  L KI+  + K   + T RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSEIPYTIADIAKDLHVSQNHLVKIVHFMGKQQWIVTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPSARTLRLGEIVRVLQGHQQIVECNTP---PCVLRSQCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  +V++
Sbjct: 118 SLDQYTLGEVVQH 130


>gi|254471392|ref|ZP_05084794.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
 gi|211959538|gb|EEA94736.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
          Length = 131

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +  D   RI Q+ +    S   + K++  L +AGI+ET+RGR GG +L R A  I++ DV
Sbjct: 1   MQPDVIQRIDQVVQQQGFSRGHVMKLVNQLSRAGILETMRGRGGGFKLGRLAKHISVGDV 60

Query: 79  VKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           V+A E  F V EC       +I C  + SC L  ++++A +AF DVL + +IE
Sbjct: 61  VRAVENDFAVVECLRQSECGEIHCCFLPSCRLKPLMQRASSAFLDVLDEMTIE 113


>gi|320159424|ref|YP_004172648.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
 gi|319993277|dbj|BAJ62048.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
          Length = 136

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 10/109 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +T++ DY +R ++Y A  +  PN+    SQIAE   I   FL KI+  L  AG++ T 
Sbjct: 1   MQITRQADYALRAMVYLARLS--PNQRASTSQIAEEQHIPPSFLAKIISQLSIAGLIHTS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPL 101
           RG RGGV L RP ++IT+LDVV+A +    + EC +   +     DCP+
Sbjct: 59  RGARGGVTLARPPEEITVLDVVEAIDGPIALNECTSPSGVCMFGEDCPM 107


>gi|289664563|ref|ZP_06486144.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671188|ref|ZP_06492263.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 152

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A H D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAAHCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 121 ALRRVTLAQMLQ 132


>gi|240140269|ref|YP_002964747.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254562849|ref|YP_003069944.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|240010244|gb|ACS41470.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254270127|emb|CAX26117.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           DM4]
          Length = 158

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +H    + I++IA A  ISE  L K++  L + G++ T RGR
Sbjct: 1   MRLTRYTDYALRALIYLGLHEPQQSSIAEIARAYGISESHLTKVVHQLGRLGLIRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R AD+I I  VV+ TE+   + ECFA     C +   C L   L +AL AF  
Sbjct: 61  GGGLHLGRRADEIVIGAVVRQTEDDLALVECFAGGA--CAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLVRNRSS 136
           VL  Y++  L+ + + 
Sbjct: 119 VLDGYTLADLLGDEAG 134


>gi|260549846|ref|ZP_05824062.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407096|gb|EEX00573.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 148

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYIARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC       C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGAIVRILQGDHQIVECNTP---PCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSI-ECLVRNRSS 136
            L Q+++ E L + +S+
Sbjct: 121 SLDQHTLGEVLQQPKSA 137


>gi|89900669|ref|YP_523140.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345406|gb|ABD69609.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 169

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVLM+CA++ +    I+++AE+  IS+  L K++  L + G+++T RGR
Sbjct: 1   MRLTDYTDYTLRVLMFCALNPERSVTIAELAESHAISKNHLMKVVNDLARQGLLQTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+ TE  F + ECF      C L   C L  V   A   F  
Sbjct: 61  GGGLRLLKPAADIRIGDVVRQTETDFRLVECFDPGHNTCTLTAQCQLKQVFWTAKQNFLA 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 ELDKVTL 127


>gi|323137714|ref|ZP_08072790.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
 gi|322397011|gb|EFX99536.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
          Length = 150

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D   R L++  +  +    I +I+ A   SE  L K+   LVK  ++   RGR
Sbjct: 1   MRLTTHSDLAFRTLIFLGVAGERGATIPEISSAFGASEHHLRKVAFELVKLELIRATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     Q+TI ++++  E  F  +EC  + +  C + G+CGL  V  ++L A F 
Sbjct: 61  NGGLALNISPAQVTIGELLRKLEPEFAESECLGAGQKGCVIFGACGLQRVFNESLGALFG 120

Query: 121 VLTQYSI 127
           VL +Y++
Sbjct: 121 VLDRYTL 127


>gi|87118174|ref|ZP_01074073.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
 gi|86165808|gb|EAQ67074.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
          Length = 147

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R LMY  +I  +  + + ++A     S+    K++  L K G V+++RG
Sbjct: 1   MRLTAFTDFGLRTLMYLTSIPTEQLSSVPEVARVYGASQNHFVKVIGQLTKLGYVQSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I I  V++  E       C    K  C +   C L   L  A+ AF 
Sbjct: 61  KNGGIRLAKKAEDINIGKVIRELENHLDAVNCT---KPVCQIASCCELKHALALAMEAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             + QYS+  +V N+  +  ++ +
Sbjct: 118 STMEQYSLADIVHNKPELIPLWQS 141


>gi|253991548|ref|YP_003042904.1| transcriptional repressor NsrR [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638426|emb|CAR67048.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782998|emb|CAQ86163.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 141

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y  A+       IS++ +   +S   + KI+  L   G+V+ VRG
Sbjct: 1   MQLTSFTDYGLRALIYMAALPQSQMTSISEVTDVYGVSRNHMVKIINQLSHLGLVDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    V  C       C +  +C L  VL +A   F 
Sbjct: 61  KNGGIRLGKPAKDIRIGDVVRALEPLSLV-NCSQE---SCHITSACRLKVVLNQAAEKFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  +V +   + K+ 
Sbjct: 117 EELDKHTLADMVEDNIPLYKLL 138


>gi|188535079|ref|YP_001908876.1| transcriptional repressor NsrR [Erwinia tasmaniensis Et1/99]
 gi|188030121|emb|CAO98007.1| Putative negative regulator [Erwinia tasmaniensis Et1/99]
          Length = 141

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPAGRMTSISEVTEIYGVSRHHMVKIINQLSRAGYVSALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I  VV+ T E   +  C +     C +  +C L + L +A+ +F 
Sbjct: 61  KNGGILLGKPAAEIVIGQVVR-TLEPLQLVNCSSEF---CHITAACRLKTALHEAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  LV +   + KI 
Sbjct: 117 RELDQYTLADLVEDNHPLYKIL 138


>gi|59712922|ref|YP_205698.1| transcriptional repressor NsrR [Vibrio fischeri ES114]
 gi|197336033|ref|YP_002157111.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
 gi|75353317|sp|Q5E2D6|NSRR_VIBF1 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737681|sp|B5FBQ6|NSRR_VIBFM RecName: Full=HTH-type transcriptional repressor nsrR
 gi|59481023|gb|AAW86810.1| nitrite-responsive HTH-type transcriptional repressor NsrR [Vibrio
           fischeri ES114]
 gi|197317523|gb|ACH66970.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
          Length = 141

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y  ++       I+ + E   +S   + KI+  L + G V+T+RG
Sbjct: 1   MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLGQEGYVKTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PADQI I DV++A  E   V  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGICLGKPADQIIIGDVIRAI-EPLQVVNCAPEF---CHITPACRLKGALAKAKQAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L +++I+ ++ + S +
Sbjct: 117 DELDKHTIQDMLTDNSEL 134


>gi|172057146|ref|YP_001813606.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989667|gb|ACB60589.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 146

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 15/145 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IR L++   + D   RI ++A+   IS+  L K++  L + G++ +VRGR
Sbjct: 1   MRMTRYTDYAIRSLLFAGANADRLVRIQEVADCYDISKNHLMKVVYRLGQNGLIHSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV------LRKA 114
            GG RL  P D+I I DVV+  E +        +H +D PL G+  L S+         A
Sbjct: 61  GGGFRLASPPDEIYIGDVVQLFEPT--------THFLD-PLEGTSELPSLDPARDAFDDA 111

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
           + AF  VL  Y+I  L+   +S  +
Sbjct: 112 IAAFHQVLNSYTINDLLHPTNSTHR 136


>gi|313905467|ref|ZP_07838831.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469651|gb|EFR64989.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 144

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+H N  P RI  I+    IS  +L +I+  LV+A  +++VRG
Sbjct: 1   MKISTKGRYALRMMLDIALHDNGVPVRIKDISARQEISLKYLEQIVSALVRAKYLKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + A + T+ D+++ TE S    EC A    DCP  GSC    +  +   A  
Sbjct: 61  PQGGYLLAKKASEYTVGDILRVTEGSLSPVECLAGDVNDCPRRGSCVTLRLWEELDEAIS 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
            V+  Y+IE L        K +NAG
Sbjct: 121 KVVDSYTIEDL--------KNWNAG 137


>gi|242238239|ref|YP_002986420.1| transcriptional repressor NsrR [Dickeya dadantii Ech703]
 gi|242130296|gb|ACS84598.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech703]
          Length = 141

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     I+++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGKMTSITEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    V  C  +H+  C +  +C L  VLR+A+  F 
Sbjct: 61  KNGGIRLGRDPATIRIGDVVRELEPLALV-NC--NHEF-CHITSACRLKQVLRQAVEQFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V+    + ++ 
Sbjct: 117 QELDNYTLADMVKENPPLYQLL 138


>gi|289208246|ref|YP_003460312.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288943877|gb|ADC71576.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 143

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD+ +RVLMY  +  +D    ++ I+E   I    L KI+  L + G + T RG
Sbjct: 1   MQLTRFTDFSLRVLMYLTVQPDDQRVTVTDISERFGIPRNHLVKIVHQLGQKGYLITRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L R  + I I  VV+  E +  V +C +     CP++  C L  VL  A +AF 
Sbjct: 61  KGGGISLARAPESINIGAVVRDMEPNLKVVDCESPM---CPILPGCQLRGVLDDARDAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++  + ++   ++ + 
Sbjct: 118 AVLDQYTVRDVTQSPEHLRSLL 139


>gi|218551448|ref|YP_002385240.1| transcriptional repressor NsrR [Escherichia fergusonii ATCC 35469]
 gi|226737671|sp|B7LLW0|NSRR_ESCF3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|218358990|emb|CAQ91650.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|324112225|gb|EGC06203.1| transcriptional regulator [Escherichia fergusonii B253]
 gi|325499713|gb|EGC97572.1| transcriptional repressor NsrR [Escherichia fergusonii ECD227]
          Length = 141

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|46914863|emb|CAG21640.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 151

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V+TVRG
Sbjct: 8   VQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 67

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117
           + GG+RL  PA++I + DVV+ATE    V  +E F      C +  +C L  +L  A +A
Sbjct: 68  KNGGIRLGMPANRIILGDVVRATEPLQIVNCSEDF------CHITPACQLKGILASARSA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
           F   L ++++  L+ N   +
Sbjct: 122 FLAELDKHTLLSLIDNNPPL 141


>gi|325266572|ref|ZP_08133249.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
 gi|324982015|gb|EGC17650.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
          Length = 157

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT++TDY +RVL+Y AI+N+    I++IA+   IS+  L K++  LVK G + +VRG+
Sbjct: 11  MHLTQQTDYALRVLIYTAINNEGLVNIAEIAKTYDISKSHLMKVVTALVKGGFLHSVRGK 70

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  +QI + DVV+ T E   +AECF  +  +C +   C L ++L   L  F  
Sbjct: 71  GGGLRLGKEPEQIRVGDVVRLT-EPMVIAECFGENN-ECIISPHCRLANILNSGLKLFLM 128

Query: 121 VLTQYSIECLVR 132
            L  Y++  L+ 
Sbjct: 129 HLDNYTLADLLN 140


>gi|261342839|ref|ZP_05970697.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
           35316]
 gi|288314881|gb|EFC53819.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
           35316]
          Length = 141

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPAGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + DVV+  E    V  C ++    C +  +C L   L +A+ +F 
Sbjct: 61  KNGGIRLGKPAQSIRVGDVVRELEPLSLV-NCSSAF---CHITPACRLKQALSQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|282600062|ref|ZP_05972854.2| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
 gi|282566903|gb|EFB72438.1| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
          Length = 142

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y  A+       I+++ +   +S   + KI+  L   G ++ VRG
Sbjct: 3   VQLTSFTDYGLRALIYLAALEKGKMTSITEVTDVYGVSRNHMVKIINQLSHLGYIKAVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA+ I I DVV+A E    V  C       C +  +C L   L KA+  F 
Sbjct: 63  KNGGISLGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGALNKAIQQFL 118

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V++ S + ++ 
Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140


>gi|311281270|ref|YP_003943501.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
 gi|308750465|gb|ADO50217.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
          Length = 141

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRVGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    V  C +     C +  +C L   L  A+ +F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSNAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138


>gi|149201796|ref|ZP_01878770.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
 gi|149144844|gb|EDM32873.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
          Length = 156

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M LTK TDY +RVL+Y A     P  ++ I E      IS   L K++  L+  G +E +
Sbjct: 1   MRLTKFTDYSLRVLLYAATLK--PGELTTIEETAKLYDISRAHLKKVVLQLIHEGFLEGI 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG RL R   +I +  VV+  E  F +AECF+     C +   C L  VL  AL  
Sbjct: 59  RGRSGGFRLARSPGEINLGQVVRKMEPEFALAECFSPDNA-CRVTKGCRLPIVLNLALTN 117

Query: 118 FFDVLTQYSIECLV 131
           F +    +++  L 
Sbjct: 118 FLNTFDDFTLADLA 131


>gi|152973049|ref|YP_001338195.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580843|ref|YP_002240865.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
 gi|238892663|ref|YP_002917397.1| transcriptional repressor NsrR [Klebsiella pneumoniae NTUH-K2044]
 gi|288937522|ref|YP_003441581.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Klebsiella variicola At-22]
 gi|290512260|ref|ZP_06551627.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
 gi|189030887|sp|A6TH94|NSRR_KLEP7 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737672|sp|B5Y324|NSRR_KLEP3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|150957898|gb|ABR79928.1| conserved protein, Winged helix domain [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206569901|gb|ACI11677.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
 gi|238544979|dbj|BAH61330.1| putative HTH-type transcriptional repressor [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288892231|gb|ADC60549.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
           At-22]
 gi|289775255|gb|EFD83256.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
          Length = 141

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA QI + DVV+  E    V  C +     C +  +C L   L +A  +F 
Sbjct: 61  KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138


>gi|325915080|ref|ZP_08177408.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538692|gb|EGD10360.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 152

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A  +      S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARSGEVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A QIT++++V+A E    + EC   H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARDAGQITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 121 ALRRVTLAQMLQ 132


>gi|37528395|ref|NP_931740.1| transcriptional repressor NsrR [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418099|sp|Q7MYU4|NSRR_PHOLL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|36787833|emb|CAE16948.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 141

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L   G+V+ VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPQSRMTSISEVTDIYGVSRNHMVKIINQLSHLGLVDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    V  C       C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAKDIRIGDVVRALEPLSLV-NCSQE---SCHITSACRLKVVLNQAIERFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  ++ +   + K+ 
Sbjct: 117 EELDKHTLADMIEDNIPLYKLL 138


>gi|21232196|ref|NP_638113.1| hypothetical protein XCC2765 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767675|ref|YP_242437.1| hypothetical protein XC_1348 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113952|gb|AAM42037.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573007|gb|AAY48417.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 152

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A  +D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 ALRRVTL 127


>gi|319786706|ref|YP_004146181.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465218|gb|ADV26950.1| transcriptional regulator, BadM/Rrf2 family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 154

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A         +++AE   + +  + K+L+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARPGEVLSAAELAEQSGLEQPTVSKLLKPLAQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL R AD+IT++++V+A E    + EC  +    C +   CG+ S  R   +   D
Sbjct: 62  RGGYRLSRDADRITLIEIVEAMEGPLAMTECSQAGANQCGIAHQCGVRSNWRLINDVVAD 121

Query: 121 VL 122
            L
Sbjct: 122 AL 123


>gi|270158902|ref|ZP_06187558.1| rrf2 family protein [Legionella longbeachae D-4968]
 gi|289166311|ref|YP_003456449.1| DNA-binding transcriptional regulator [Legionella longbeachae
           NSW150]
 gi|269987241|gb|EEZ93496.1| rrf2 family protein [Legionella longbeachae D-4968]
 gi|288859484|emb|CBJ13439.1| DNA-binding transcriptional regulator [Legionella longbeachae
           NSW150]
          Length = 148

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +  +    I  I +A  IS   + KI+  L K G+++T RG+
Sbjct: 1   MQLTQFTDYSLRALIYITLRKESCT-IKDITDAYTISNNHMVKIIHNLAKLGLIKTSRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E  F +  CF   K +C +   C L  +L +A  AF  
Sbjct: 60  GGGILIAVQPETINLGKLIAQLEPHFDLVPCFNKEKANCCIAPVCRLKGILHEAQTAFMK 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  ++ N   +  + N
Sbjct: 120 VLERYTLADVLHNPKELSVLLN 141


>gi|93006349|ref|YP_580786.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394027|gb|ABE75302.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
           cryohalolentis K5]
          Length = 181

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 41/182 (22%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  +DY +R L+Y A   + P     IS IA +  IS+  L KI+Q L + G +++V
Sbjct: 1   MRLTNYSDYALRSLIYLATKPE-PTLLANISDIANSYHISKSHLTKIIQQLGQLGYIDSV 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------------- 98
           RG+ GG+RL      I + +++K  E  F + ECF+++ +D                   
Sbjct: 60  RGKNGGIRLAHAPKDINLGELIKKIEPDFALVECFSTNSLDSSIADINSAVINDEKNASA 119

Query: 99  ------------------CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
                             C +   C L  VL +AL AF  VL +Y++  ++ N+  +  +
Sbjct: 120 NDMSLKLIDETVSHIASGCIISPVCQLKQVLAEALTAFIAVLERYTLADIIENKDELAAL 179

Query: 141 FN 142
            +
Sbjct: 180 LS 181


>gi|291614830|ref|YP_003524987.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
           lithotrophicus ES-1]
 gi|291584942|gb|ADE12600.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
           lithotrophicus ES-1]
          Length = 152

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I++I++   IS   L K++  L     + T RG+
Sbjct: 1   MRLTIYTDYSLRVLLYLASKPGETATITEISDFYNISRNHLVKVVHNLGLNEFIITSRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L R A+ I + DVV+ TE    + ECF     +C +  +C L S+L +  +AF  
Sbjct: 61  NGGIKLARAAEAILLSDVVRKTEPDMDLLECFNESTDNCVISSACRLKSMLYEGRSAFMA 120

Query: 121 VLTQYSI 127
           VL + ++
Sbjct: 121 VLEKNTL 127


>gi|254459475|ref|ZP_05072891.1| HTH-type transcriptional regulator NsrR [Rhodobacterales bacterium
           HTCC2083]
 gi|206676064|gb|EDZ40551.1| HTH-type transcriptional regulator NsrR [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 115

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 55/94 (58%)

Query: 42  FKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
            KI+  L +AG + T RGR GG RL +PA++I + DVV+ TE    + ECF      CPL
Sbjct: 1   MKIVHELGQAGYIVTQRGRGGGFRLAKPAEEIVVGDVVRLTEGPLNLVECFNLENNTCPL 60

Query: 102 VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           +G C L+  L++A  AF  VL   ++  +  NRS
Sbjct: 61  IGICKLSRSLQEATRAFMAVLDDLTLADIASNRS 94


>gi|188990792|ref|YP_001902802.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732552|emb|CAP50746.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
           campestris pv. campestris]
          Length = 152

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A  +D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 ALRRVTL 127


>gi|285017824|ref|YP_003375535.1| transcriptional regulator, rrf2 family transcription regulator
           protein [Xanthomonas albilineans GPE PC73]
 gi|283473042|emb|CBA15547.1| hypothetical transcriptional regulator, rrf2 family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 152

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLNVLAARPTEVLSATELAEQAGLEPPTVSKLLKPLAQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA+ IT++++V+A E    + EC + H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARPANAITLIEIVEAMEGPLAITEC-SHHGNQCNITHTCGVRSNWRLINDVIAD 120

Query: 121 VLTQYSIECLVR 132
            L   ++  ++R
Sbjct: 121 ALGGVTLAQMLR 132


>gi|328950902|ref|YP_004368237.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451226|gb|AEB12127.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 155

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +    P  +  +AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRGPGPVPLKDVAEAQEISQHYLEQIAAALRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL R  + IT L+VV+A E S     C    +  C  VG C   ++ ++   A  +
Sbjct: 61  KGGYRLARSPENITALEVVEAMEGSLAPVSCLEDPE-SCWQVGHCSTENLWKRVDAAMRE 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL + ++  L+  R  I+
Sbjct: 120 VLGKTTLRDLIEERRLIE 137


>gi|260599473|ref|YP_003212044.1| transcriptional repressor NsrR [Cronobacter turicensis z3032]
 gi|260218650|emb|CBA33971.1| HTH-type transcriptional repressor nsrR [Cronobacter turicensis
           z3032]
          Length = 141

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+   E   +  C ++    C +  +C L  VL  A+  F 
Sbjct: 61  KNGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV+    + K+ 
Sbjct: 117 QELDNYTLADLVQENQPLYKLL 138


>gi|308048583|ref|YP_003912149.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
           DSM 9799]
 gi|307630773|gb|ADN75075.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
           DSM 9799]
          Length = 144

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D+  R L+Y   +  +    IS++ E   +S   + K++  L  AG V TVRG
Sbjct: 1   MQLTSFSDFAFRALIYLGTLPKEELTSISRVTEVYGVSRNHMVKVINKLGHAGFVTTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG+RL +   +I + DVV+A E    V +C +     C +V +C L  VL +A NAF 
Sbjct: 61  KKGGIRLAKAPAEIGLGDVVRALEPLKLV-DCGSPF---CHIVPACRLKGVLEEATNAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L QY++  ++ N   +
Sbjct: 117 AALDQYTLADMLSNNPHL 134


>gi|322418655|ref|YP_004197878.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320125042|gb|ADW12602.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 136

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR ++Y A     P R   IS+IA A  + + FL KI Q   K G+V + 
Sbjct: 2   MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSS 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RPA  IT+ +VV+A E       C       C   G C +  + ++    
Sbjct: 60  RGTGGGFVLARPASAITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHLIWKRVQTE 117

Query: 118 FFDVLTQYSIECLVRN 133
             D+L   +I+ L RN
Sbjct: 118 VVDILDSVTIDTLARN 133


>gi|134291578|ref|YP_001115347.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134767|gb|ABO59092.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 170

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVET 56
           MHLT  TDY +RV+MY A+   YP    + I +IA A  IS   L K++  L + G +ET
Sbjct: 1   MHLTLYTDYTLRVMMYLAL--KYPGGGVSTIDEIAGAYGISRNHLTKVVHELSQLGFIET 58

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113
            RGR GG  L R  +QI++ ++V+  E+ F V  C     +H   C +   C L   L +
Sbjct: 59  SRGRAGGACLARAPEQISVGEIVRTAEKDFAVVSCHDMTVAH--GCTIFPVCNLRHRLYR 116

Query: 114 ALNAFFDVLTQYSI 127
           A++AF   L   ++
Sbjct: 117 AVDAFLHELDTMTL 130


>gi|89094369|ref|ZP_01167310.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
 gi|89081428|gb|EAR60659.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
          Length = 143

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVL Y A ++     +S+IA+   IS   L K++  L KAG + T RG+
Sbjct: 1   MQLSRFTDYTLRVLFYVATNDKRLVTLSEIAKCYDISVEHLRKVVHALSKAGHLATFRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +   +I I +V+   E    +  C       C L G C L SVL +A  AF  
Sbjct: 61  NGGIKLAKHPSEINIGEVIAEAEGRQPLINCGQQM---CRLTGFCTLQSVLGEAQTAFMR 117

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL QY++  ++ +    + + N
Sbjct: 118 VLDQYTLADMLESTDMRESLIN 139


>gi|34581534|ref|ZP_00143014.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262919|gb|EAA26423.1| unknown [Rickettsia sibirica 246]
          Length = 142

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R L+Y A     P RI    +I+E   IS   L K++  L + G + + 
Sbjct: 1   MQLTSVTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G+ GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  A
Sbjct: 58  KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEA 117

Query: 118 FFDVLTQYSIE 128
           F   L  Y++E
Sbjct: 118 FIKTLNNYTLE 128


>gi|291327130|ref|ZP_06127096.2| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
 gi|291311664|gb|EFE52117.1| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
          Length = 142

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G ++  RG
Sbjct: 3   VQLTSFTDYGLRALIYLASLGEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYIKATRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA+ I I DVV+A E    V  C       C +  +C L  VL +A+  F 
Sbjct: 63  KNGGITLGQPAESIRIGDVVRALEPLTLV-NCSGEF---CHITPACRLKGVLHQAIQQFL 118

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V++ S + ++ 
Sbjct: 119 QELDQYTLADMVKDNSPLYQLL 140


>gi|283786857|ref|YP_003366722.1| transcriptional repressor [Citrobacter rodentium ICC168]
 gi|282950311|emb|CBG89958.1| transcriptional repressor [Citrobacter rodentium ICC168]
          Length = 141

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG +  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFITAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKAANTIRIGDVVRELEPLSLV-NCNSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEQNQPLYKLL 138


>gi|307544373|ref|YP_003896852.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
 gi|307216397|emb|CBV41667.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
          Length = 169

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 4/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L++ TDY   V+   A H + P+  +++AEA  +    + K L+ LV+AG++E+ RG 
Sbjct: 18  LKLSRLTDYAAVVMAQIARHPEQPHAAAELAEAVSLPHPTVSKTLKMLVRAGLLESRRGA 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNA 117
           +GG  L RPA +I+  D++ A E    + EC  +   DC LV  CG++   ++   A+  
Sbjct: 78  QGGYSLARPASRISASDIISAIEGPVAMTECSQAEG-DCDLVSVCGVSDNWQRVSLAVRT 136

Query: 118 FFDVLT 123
             D +T
Sbjct: 137 LLDSVT 142


>gi|297537962|ref|YP_003673731.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
 gi|297257309|gb|ADI29154.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
          Length = 153

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +RVLMY        P  I++IAE   +    L K++  L K G V   RG
Sbjct: 1   MQLTKFTDLSLRVLMYLTQEERLMPVTINEIAEQFTVPRNHLIKVVTRLNKLGWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL   A+Q+ + +V++  E +  + +C    K  C L G+C L  +L   L AF+
Sbjct: 61  RNGGLRLGVQANQLKLGNVLQELENASALIDCA---KPPCALKGNCHLKEILDIGLKAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + +  +S+  +V +++ 
Sbjct: 118 EHMNTFSLADVVNHKTQ 134


>gi|229586877|ref|YP_002845378.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
 gi|228021927|gb|ACP53635.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
          Length = 142

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R L+Y A     P RI    +I+E   IS   L K++  L + G + + 
Sbjct: 1   MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G+ GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  A
Sbjct: 58  KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEA 117

Query: 118 FFDVLTQYSIE 128
           F   L  Y++E
Sbjct: 118 FIKTLNNYTLE 128


>gi|271501898|ref|YP_003334924.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
           Ech586]
 gi|270345453|gb|ACZ78218.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech586]
          Length = 141

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    V  C    K  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVRELEPLSLV-NC---SKAFCHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 KELDNYTLADMVEQNPHLYKLL 138


>gi|307132423|ref|YP_003884439.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
 gi|306529952|gb|ADM99882.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
          Length = 141

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+   E   +  C    K  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVREL-EPLSLVNC---SKEFCHITSACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 KELDNYTLADMVEENPPLYKLL 138


>gi|320105376|ref|YP_004180966.1| BadM/Rrf2 family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319923897|gb|ADV80972.1| transcriptional regulator, BadM/Rrf2 family [Terriglobus saanensis
           SP1PR4]
          Length = 164

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN----DYPNRIS-------QIAEACCISELFLFKILQPLV 49
           + LTK+ DYG+  L Y A       ++P  +         IAEA  I    L KILQ L 
Sbjct: 2   LRLTKKADYGLMALKYLAEQAVAAAEHPESVPAHAQSAKDIAEAYHIPPQLLAKILQTLA 61

Query: 50  KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
           +AGI+ +  G  GG  L R A +IT  +V++A +   F+  C   H   C L G C +  
Sbjct: 62  RAGILVSHAGTNGGYSLARSATEITAFEVIRAIDGPLFITSCITIHGT-CDLAGHCTIKE 120

Query: 110 VLRKALNAFFDVLTQYSIECLV 131
            LRK  ++  D+L+   I  LV
Sbjct: 121 PLRKVNDSIKDLLSGIRISDLV 142


>gi|296136896|ref|YP_003644138.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|295797018|gb|ADG31808.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 146

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D+G+R L+  A          ++A    IS   L K+LQ L   G V+T RG 
Sbjct: 1   MRLTSFSDFGLRALLVLAGSERETWSSVELAAKLDISRDHLIKVLQRLAAGGYVQTTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I I +V++  E+   + ECF      C L G C L   L +A  AF+ 
Sbjct: 61  GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120

Query: 121 VLTQYSI-ECL 130
            L + ++ +CL
Sbjct: 121 ALNETTLADCL 131


>gi|251788403|ref|YP_003003124.1| transcriptional repressor NsrR [Dickeya zeae Ech1591]
 gi|247537024|gb|ACT05645.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 141

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    V  C    K  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVRELEPLSLV-NC---SKEFCHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 TELDNYTLADMVEENPPLYKLL 138


>gi|121999002|ref|YP_001003789.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590407|gb|ABM62987.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 151

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y     +    + +IA A  IS+  L K++  L + G ++T +GR
Sbjct: 1   MELTYYTDYALRVLLYAGAQGERRVPMREIARAYGISQDHLRKVVHRLARHGYLQTTQGR 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL C P   I + DVV+  E+S  +  C    +  CPL G C L   L  A + F 
Sbjct: 61  SGGLRLGCAPG-AIRVGDVVRLMEDSLELIHC---DRGPCPLCGHCSLKRALNGARDQFI 116

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++E L+ +  + +++
Sbjct: 117 QHLDGVTLEELLADPGTAQQL 137


>gi|90581369|ref|ZP_01237165.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
 gi|90437479|gb|EAS62674.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
          Length = 144

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G +ETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I + DVV+A  E   +  C       C +  +C L  VL  A  AF 
Sbjct: 61  KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSLDF---CHITPACRLKGVLADAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L +Y++  LV + + +  + +
Sbjct: 117 AELDKYTLLTLVEDNAPLLNLLS 139


>gi|326316430|ref|YP_004234102.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373266|gb|ADX45535.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 168

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  I+++A    IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL  PA  I + DVV+ TE  F + ECF      C L G C L   L +A  +F
Sbjct: 61  GRGGGLRLRVPAADIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSF 120

Query: 119 FDVLTQYSIECLV 131
             VL   ++  LV
Sbjct: 121 LAVLDGVTLADLV 133


>gi|67459267|ref|YP_246891.1| putative transcriptional regulator [Rickettsia felis URRWXCal2]
 gi|67004800|gb|AAY61726.1| Putative transcriptional regulator [Rickettsia felis URRWXCal2]
          Length = 142

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIE 128
            L  Y++E
Sbjct: 121 TLNNYTLE 128


>gi|294341067|emb|CAZ89464.1| putative Transcriptional regulator [Thiomonas sp. 3As]
          Length = 146

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D+G+R L+  A          ++A    IS   L K+LQ L   G V+T RG 
Sbjct: 1   MRLTSFSDFGLRALLVLAGSERETWSSVELATKLDISRDHLIKVLQRLAAGGYVQTTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I I +V++  E+   + ECF      C L G C L   L +A  AF+ 
Sbjct: 61  GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120

Query: 121 VLTQYSI-ECL 130
            L + ++ +CL
Sbjct: 121 ALNETTLADCL 131


>gi|237703845|ref|ZP_04534326.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 3_2_53FAA]
 gi|332280962|ref|ZP_08393375.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
           D9]
 gi|226901757|gb|EEH88016.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 3_2_53FAA]
 gi|332103314|gb|EGJ06660.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
           D9]
          Length = 161

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 21  VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 81  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 136

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 137 TELDNYTLADLVEENQPLYKLL 158


>gi|296100945|ref|YP_003611091.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055404|gb|ADF60142.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 158

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 18  VQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 77

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L  A+ +F 
Sbjct: 78  KNGGIRLGKPAQSIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSLAVQSFL 133

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 134 KELDNYTLADLVEENQPLYKLL 155


>gi|281355327|ref|ZP_06241821.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281318207|gb|EFB02227.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 148

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R+L+  A+++ + P  I  I+E+  ISE ++ +++  L KAG+V+++RG
Sbjct: 1   MKISTKGRYGLRILLDLALNDSEKPRMIRDISESQHISEKYISRLIIELRKAGMVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG R+ R   +IT+LDVV+  E    + +C ++    CP + SC    +  +  N   
Sbjct: 61  SKGGYRISREPKEITLLDVVEVMEGPVSIVDCVSARDC-CPRIASCVTREIWTELNNQIR 119

Query: 120 DVLTQYSIECLV 131
           + L + +++ ++
Sbjct: 120 EALQKITLQEII 131


>gi|258514866|ref|YP_003191088.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778571|gb|ACV62465.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 144

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T++T+Y I  ++  A     D+   I QIA    I E+FL K +Q L K+GIV T R
Sbjct: 1   MQITRQTEYAIHAVIELAQIPFGDFV-LIRQIANKLNIPEMFLKKTVQALNKSGIVVTQR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GGVRL RP+D++T+ DV+ A E    +  C   +   C     C +  +L++   A 
Sbjct: 60  GTNGGVRLSRPSDKLTVADVMAAIEGPLMLNVCLGEN-YQCSNKPFCSIHKILQRTQKAV 118

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L++ +   +++N+  ++K
Sbjct: 119 LRELSRETFADIIKNKLRLEK 139


>gi|56708970|ref|YP_165015.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680655|gb|AAV97320.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 160

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ A          +IA+   +    L KI Q L   G VE+VRGR
Sbjct: 1   MQISKFSDYALRILIHLATSEGGLMSTREIADLQQLPFNHLAKISQWLTHEGYVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D I+I  +++ +E    + EC       C +  +CGL  +L +A  AFF 
Sbjct: 61  HGGMRLALPPDAISIGGLLRKSERGTPLVECMKEGGGCCVMTPACGLLPILIEAQEAFFH 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   +++ ++     ++ +  A
Sbjct: 121 SLDGSTLQDVLSGNRGMQNLIRA 143


>gi|304396949|ref|ZP_07378829.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304355745|gb|EFM20112.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 147

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++     +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  PA QI I DVV+  E    V +C +     C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMPARQIVIGDVVRKMEPLQLV-DCAS-----CSITPACRLKQALHDAVQRFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV   + + +I 
Sbjct: 115 QELDNYTLADLVEGNTPLYEII 136


>gi|196233877|ref|ZP_03132715.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
 gi|196222071|gb|EDY16603.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
          Length = 153

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 76/143 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y   H+       ++A+A  IS   L K+ + L KAG +   RG 
Sbjct: 1   MQLTTHSDYALRLLIYLTSHSTRKVSTREVADAYGISLNHLTKVAKSLTKAGWLLAARGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     +  + ++V+ TE +  VAECF +    CP+   C L  +L +A  AFFD
Sbjct: 61  GGGLTLAPHTREARVGEIVRYTEYTCDVAECFDAKANTCPITSVCRLKPLLYRAQKAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL   +IE + RN   +  IF +
Sbjct: 121 VLDTATIEDIARNPGELNAIFES 143


>gi|302878002|ref|YP_003846566.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302580791|gb|ADL54802.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 143

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TD  +R L+Y     +    I+++++A  I +  L K++  LV AG+V + RGR
Sbjct: 1   MQLNLSTDIALRTLIYLGQKKETAT-IAEVSDAFDIVKTHLMKVVMQLVAAGVVVSERGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL R   +I + DVV+  E +  +  C  +   D  CPL+ +C L ++L  A  AF
Sbjct: 60  NGGIRLARNPAEIVVGDVVRLMENNLALLYCMKTDAPDDCCPLMPNCHLRTILFNAQKAF 119

Query: 119 FDVLTQYSIECLV 131
            D L   ++  L+
Sbjct: 120 LDTLDGNTLADLL 132


>gi|89075977|ref|ZP_01162349.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
 gi|89048326|gb|EAR53905.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
          Length = 144

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G +ETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I + DVV+A  E   +  C       C +  +C L  VL  A  AF 
Sbjct: 61  KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSVDF---CHITPACRLKGVLADAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L +Y++  LV + + +  + +
Sbjct: 117 AELDKYTLLNLVEDNAPLLNLLS 139


>gi|120610257|ref|YP_969935.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588721|gb|ABM32161.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
           AAC00-1]
          Length = 167

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  I+++A    IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL  PA  I + DVV+ TE  F + ECF      C L G C L   L +A  ++
Sbjct: 61  GRGGGLRLRVPAASIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSY 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
             VL   ++  LV   ++   +  A
Sbjct: 121 LAVLDGVTLADLVARPAAAGAVSPA 145


>gi|119386877|ref|YP_917932.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119377472|gb|ABL72236.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 182

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y A H D    I   A A  IS   L K+   L +AG + +VRGR
Sbjct: 48  MRLTSFSDYALRLLIYAARHPDRLVTIEGAALAYDISRSHLTKVANVLTRAGFLNSVRGR 107

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R    + + +V++ TE     AECF   +I  P      L + +R AL AF  
Sbjct: 108 SGGLELGRDPAALRLGEVLRVTEPDMAAAECFGPEEIRDP-NRPGALDAAIRDALAAFLQ 166

Query: 121 VLTQYSIECLV 131
           V+ + ++  L+
Sbjct: 167 VMDRRTLADLL 177


>gi|300715046|ref|YP_003739849.1| transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
 gi|299060882|emb|CAX57989.1| Transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
          Length = 145

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y  A+       I+++ EA  +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYLAALPAGQMASITEVTEAYGVSRNHMVKIINQLSRAGYVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +I I  VV+  E    V  C       C +  +C L   L  A+ +F 
Sbjct: 61  KNGGIRLGKPASEIVIGQVVREMEPLQLV-NCQP-----CLISPACRLKKALYDAVQSFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ +   + K+ 
Sbjct: 115 AVLDGYTLADLLEDNHPLYKLL 136


>gi|134093901|ref|YP_001098976.1| hypothetical protein HEAR0652 [Herminiimonas arsenicoxydans]
 gi|133737804|emb|CAL60849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 151

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +D G+RVLMY A     P+  ++++A    +    L K++  L K G ++ VRG
Sbjct: 1   MKLTRFSDIGLRVLMYLAREARSPSVTVAEVAMQFDVPHNHLVKVVGALAKMGCIDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   AD++ I DV++  E    + +C    +I C L   C L + L+  + AF+
Sbjct: 61  RNGGIHLAVAADKLLIGDVLRMLEGDTEMVDC---ERIGCRLSSDCLLRNALKVGVEAFY 117

Query: 120 DVLTQYSIECLVRNR-----SSIKKIF 141
           D +  Y++  +V         ++ K+F
Sbjct: 118 DAMNLYTLADIVNGNVGEHIGNMHKVF 144


>gi|58581029|ref|YP_200045.1| hypothetical protein XOO1406 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425623|gb|AAW74660.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 152

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC  +H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 121 ALRRVTLAQMLQ 132


>gi|15892744|ref|NP_360458.1| hypothetical protein RC0821 [Rickettsia conorii str. Malish 7]
 gi|15619921|gb|AAL03359.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 142

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R L+Y A     P RI    +I+E   IS   L K++  L + G + + 
Sbjct: 1   MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G+ GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  A
Sbjct: 58  KGKGGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEA 117

Query: 118 FFDVLTQYSIE 128
           F   L  Y++E
Sbjct: 118 FIKTLNNYTLE 128


>gi|84622946|ref|YP_450318.1| hypothetical protein XOO_1289 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577995|ref|YP_001914924.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84366886|dbj|BAE68044.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522447|gb|ACD60392.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 152

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC  +H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 121 ALRRVTLAQMLQ 132


>gi|239946889|ref|ZP_04698642.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921165|gb|EER21189.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 142

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R L+Y A     P RI    +I+E   IS   L K++  L + G + + 
Sbjct: 1   MQLTSFTDYGLRSLIYLA---SKPERICSVKEISEYYNISLNHLVKVIHRLAQLGYINSS 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G+ GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  A
Sbjct: 58  KGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEA 117

Query: 118 FFDVLTQYSIE 128
           F   L  Y++E
Sbjct: 118 FIKTLNNYTLE 128


>gi|313679818|ref|YP_004057557.1| BadM/Rrf2 family transcriptional regulator [Oceanithermus profundus
           DSM 14977]
 gi|313152533|gb|ADR36384.1| transcriptional regulator, BadM/Rrf2 family [Oceanithermus
           profundus DSM 14977]
          Length = 147

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +    P  + ++AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRGPDPVPLKEVAEAQGISQHYLEQIAAALRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP ++I  L+VV+  E S     C       C   G C    + R+   A  +
Sbjct: 61  RGGYRLARPPEEINALEVVETMEGSLSPVGCIEDPG-SCEHEGQCSTELLWRRVDLAIRE 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 120 VLGSTNLQHLIDERRLIE 137


>gi|182418878|ref|ZP_02950135.1| Rrf2 family protein [Clostridium butyricum 5521]
 gi|237667382|ref|ZP_04527366.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377161|gb|EDT74729.1| Rrf2 family protein [Clostridium butyricum 5521]
 gi|237655730|gb|EEP53286.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 150

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A H    P  I  I++   +SE +L ++  PL +A I+ ++RG
Sbjct: 1   MKLSTKGRYGVRAMAELAAHYGGAPISIKTISKEQNLSEYYLEQLFSPLRRANIIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+   +IT+ D++   E    +A+C   +   C    SC    V  K  N+  
Sbjct: 61  AQGGYVLCKAPSEITVGDIMTILEGPIEIADCIDGYA--CDSEHSCATKFVWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DV+   S++ +V N   IKK
Sbjct: 119 DVMNSISLQDIVDNYEKIKK 138


>gi|170766851|ref|ZP_02901304.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
 gi|170124289|gb|EDS93220.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
          Length = 162

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 22  VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYDVSRNHMVKIINQLSRAGYVTAVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 82  KNGGIRLGKPASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 137

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 138 TELDNYTLADLVEENQPLYKLL 159


>gi|148264218|ref|YP_001230924.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146397718|gb|ABQ26351.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 137

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR ++Y A     P +   IS+IA A  + + FL KI Q   K GIV + 
Sbjct: 2   MELTRKGEYAIRGIIYLA--QQQPGKVSLISEIAHASDVPQTFLAKIFQSFAKLGIVNSS 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RPA  IT+ +VV+A E       C       C   G C +  V R   + 
Sbjct: 60  RGTGGGFTLGRPAASITLREVVEAVEGPIIPNRCLMGTGY-CDRGGHCNVHQVWRTVQSQ 118

Query: 118 FFDVLTQYSIECLVRNR 134
             ++L   +IE L + +
Sbjct: 119 VVNILDSVTIEELAKQK 135


>gi|85860337|ref|YP_462539.1| rrf2 family protein [Syntrophus aciditrophicus SB]
 gi|85723428|gb|ABC78371.1| rrf2 family protein [Syntrophus aciditrophicus SB]
          Length = 184

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R ++  A+H N+ P  +  IA+   ISE +L++++ PL  AG++ + RG
Sbjct: 43  MKLSTRGRYGLRFMLDLAVHYNEGPIFLKDIAQRQGISEKYLWQLIHPLKTAGLINSTRG 102

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  + IT+ D+++  E    + +C  +  I C    +C   +V ++A     
Sbjct: 103 AHGGYQLAKNPEDITLKDIMQVVEGPLCLVDCVDNASI-CERASTCITRNVWQEATRVIL 161

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L   ++E +V+ ++  +K
Sbjct: 162 KTLESLTLETMVKRQTEKEK 181


>gi|163743460|ref|ZP_02150839.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
 gi|161383290|gb|EDQ07680.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
          Length = 149

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L+  A   D    I  ++    +    + KI+  LV+ G V ++RGR
Sbjct: 1   MKLNLKTDYALRLLILLATRPDQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV++ R   +I + D+V A  E   + +C +     C LVG+C L  VL +A  AF +
Sbjct: 61  SGGVQIGREPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115

Query: 121 VLTQYSIECLVRNRSSI 137
           VL  Y +  L+   + +
Sbjct: 116 VLMAYRLSDLIEAPAPV 132


>gi|218295733|ref|ZP_03496529.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
           Y51MC23]
 gi|218243892|gb|EED10419.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
           Y51MC23]
          Length = 148

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRAPEAVPLKEVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP +++T L+VV+A E S     C    +  C  VG C    + R+   A   
Sbjct: 61  KGGYRLARPPEKVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWRRVDLAMRQ 119

Query: 121 VLTQYSIECLVRNR 134
           VL   +++ L+  R
Sbjct: 120 VLGGTTLKDLIEER 133


>gi|197117656|ref|YP_002138083.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197087016|gb|ACH38287.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 137

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR ++Y A     P R   IS+IA A  + + FL KI Q   K G+V + 
Sbjct: 2   MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSS 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RPA QIT+ +VV+A E       C       C   G C +  V ++    
Sbjct: 60  RGTGGGFVLARPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTE 117

Query: 118 FFDVLTQYSIECLVRN 133
              +L   +I+ L R+
Sbjct: 118 VVRILDGVTIDSLARS 133


>gi|320450975|ref|YP_004203071.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
           SA-01]
 gi|320151144|gb|ADW22522.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
           SA-01]
          Length = 154

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L ++G + +VRG 
Sbjct: 7   MWVSTKAQYGLRALVEIGLKAPEAVPLKEVAEAQGISQHYLEQIAAQLRRSGFIRSVRGA 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP +++T L+VV+A E S     C    +  C  VG C    + ++   A   
Sbjct: 67  RGGYRLARPPERVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWKRVDLAMRQ 125

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 126 VLGSTTLKDLIEERKLIE 143


>gi|323699033|ref|ZP_08110945.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           ND132]
 gi|323458965|gb|EGB14830.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans ND132]
          Length = 150

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A H  D P RI  IA+   +S  +L K+++ L   G V++ RG
Sbjct: 1   MKLTTRSRYGTRMMLDIAQHGKDGPVRIQDIADRQGVSAKYLEKLIRKLKDVGFVKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L +PA +I I +VV A E    + EC +  K  C  +  C    + ++A +A +
Sbjct: 61  PRGGHSLAKPAAEIPIGEVVHALEGDGSLVECRSGDK-GCSRMKECLTRRLWQEAADAMY 119

Query: 120 DVLTQYSIECLVRN 133
           + L  +++  L+ +
Sbjct: 120 ERLNTFTLADLIND 133


>gi|157155926|ref|YP_001465677.1| transcriptional repressor NsrR [Escherichia coli E24377A]
 gi|157163642|ref|YP_001460960.1| transcriptional repressor NsrR [Escherichia coli HS]
 gi|170021812|ref|YP_001726766.1| transcriptional repressor NsrR [Escherichia coli ATCC 8739]
 gi|194439542|ref|ZP_03071616.1| transcriptional repressor NsrR [Escherichia coli 101-1]
 gi|209921666|ref|YP_002295750.1| transcriptional repressor NsrR [Escherichia coli SE11]
 gi|218556730|ref|YP_002389644.1| transcriptional repressor NsrR [Escherichia coli IAI1]
 gi|253775197|ref|YP_003038028.1| transcriptional repressor NsrR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164107|ref|YP_003047215.1| transcriptional repressor NsrR [Escherichia coli B str. REL606]
 gi|297517580|ref|ZP_06935966.1| transcriptional repressor NsrR [Escherichia coli OP50]
 gi|307314874|ref|ZP_07594466.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|312965852|ref|ZP_07780078.1| rrf2 family protein [Escherichia coli 2362-75]
 gi|189030882|sp|A7ZV48|NSRR_ECO24 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030883|sp|A8A7S3|NSRR_ECOHS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030885|sp|B1IT28|NSRR_ECOLC RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736216|sp|B7M8T8|NSRR_ECO8A RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737669|sp|B6I282|NSRR_ECOSE RecName: Full=HTH-type transcriptional repressor nsrR
 gi|157069322|gb|ABV08577.1| transcriptional repressor NsrR [Escherichia coli HS]
 gi|157077956|gb|ABV17664.1| transcriptional repressor NsrR [Escherichia coli E24377A]
 gi|169756740|gb|ACA79439.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC
           8739]
 gi|194421541|gb|EDX37554.1| transcriptional repressor NsrR [Escherichia coli 101-1]
 gi|209914925|dbj|BAG79999.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218363499|emb|CAR01153.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
 gi|242379700|emb|CAQ34524.1| NsrR transcriptional repressor [Escherichia coli BL21(DE3)]
 gi|253326241|gb|ACT30843.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976008|gb|ACT41679.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253980164|gb|ACT45834.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|306905677|gb|EFN36206.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|309704683|emb|CBJ04033.1| transcriptional repressor [Escherichia coli ETEC H10407]
 gi|312289095|gb|EFR16989.1| rrf2 family protein [Escherichia coli 2362-75]
 gi|315063492|gb|ADT77819.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|323182284|gb|EFZ67694.1| rrf2 family protein family protein [Escherichia coli 1357]
 gi|323380429|gb|ADX52697.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11]
 gi|323946026|gb|EGB42063.1| transcriptional regulator [Escherichia coli H120]
 gi|323960327|gb|EGB55967.1| transcriptional regulator [Escherichia coli H489]
 gi|323970567|gb|EGB65826.1| transcriptional regulator [Escherichia coli TA007]
 gi|324118743|gb|EGC12635.1| transcriptional regulator [Escherichia coli E1167]
          Length = 141

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|283852245|ref|ZP_06369517.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572327|gb|EFC20315.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 146

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+++   P RI  IA    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALNDQAGPVRIKDIAARQGVSVKYLEKLVRELKQAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L RP ++I++  +V+A E  F + EC       CP    C    V  +A  A  
Sbjct: 61  PRGGHELARPLEEISVGAIVRALEGEFTLVECDGEAGTPCPRQADCLTREVWAEASRAMH 120

Query: 120 DVLTQYSIECLV-RNRS 135
           + L   ++  LV R+R+
Sbjct: 121 EKLDAITLADLVGRSRA 137


>gi|51893529|ref|YP_076220.1| putative transcriptional regulator [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857218|dbj|BAD41376.1| putative transcriptional regulator [Symbiobacterium thermophilum
           IAM 14863]
          Length = 146

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ L   A+H    P  +  IAE   +SE +L ++  PL +AGI+  VRG
Sbjct: 1   MKLSTKGKYGVKALFELAMHEGSGPVSLRTIAERQGLSEHYLEQLAAPLRRAGIITAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA+QIT+ D+++  E      +C    + D     +C +  V  +      
Sbjct: 61  AQGGYMLARPANQITVGDIIRVLEGPIGYTDCATEGEPDPECASTCPVHGVWERVTQQII 120

Query: 120 DVLTQYSIECLV 131
            V+   +++ LV
Sbjct: 121 AVIDSITLQDLV 132


>gi|78048634|ref|YP_364809.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037064|emb|CAJ24809.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 152

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 ALRRVTL 127


>gi|253701613|ref|YP_003022802.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251776463|gb|ACT19044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 136

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR ++Y A     P R   IS+IA A  + + FL KI Q   K G+V + 
Sbjct: 2   MELTRKGEYAIRGIIYLA--QQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVSSS 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RPA QIT+ +VV+A E       C       C   G C +  V ++    
Sbjct: 60  RGTGGGFVLGRPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTE 117

Query: 118 FFDVLTQYSIECLVRN 133
              +L   +I+ L R+
Sbjct: 118 VVHILDGVTIDLLARS 133


>gi|21243661|ref|NP_643243.1| hypothetical protein XAC2934 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294626272|ref|ZP_06704875.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664777|ref|ZP_06730103.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21109239|gb|AAM37779.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|292599418|gb|EFF43552.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605464|gb|EFF48789.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 152

 Score = 74.3 bits (181), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 ALRRVTL 127


>gi|144900519|emb|CAM77383.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 157

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++  +       I++IAE   IS+  L K++  L +AG +ETVRG+
Sbjct: 13  MRLTLHTDYALRVLVHVGLRGGELVTINEIAECHGISKNHLTKVVHQLGRAGFLETVRGK 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL      + + + V+  E+ F +A+C  AS+   C +  +C       + ++AFF
Sbjct: 73  YGGIRLLVDPRTLRLGEFVRQVEDDFALAQCMRASNADSCRVSAACLARRAFGQGIDAFF 132

Query: 120 DVLTQYSIECLV 131
             L  +++  ++
Sbjct: 133 KALNVHTLADMI 144


>gi|256828389|ref|YP_003157117.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577565|gb|ACU88701.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 138

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT R+ YG R+L+  A++ D  + N  + IA    IS+ ++ K++  L + G++E+ R
Sbjct: 1   MRLTTRSRYGTRLLLDIALNQDRGWVN-TTDIARRQKISQKYIEKLITGLRRGGLIESKR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALN 116
           G  GG +L +PA  IT+ DVV++ EE   + +C     I  +C L G C    V  +A N
Sbjct: 60  GPFGGHKLAKPAMDITVGDVVRSLEEKVALTQCAEGEPICGECSLAGECVTQFVWIEASN 119

Query: 117 AFFDVLTQYSIECLV 131
                L  Y +  LV
Sbjct: 120 VLMQTLDSYRLGELV 134


>gi|328544668|ref|YP_004304777.1| Rhizobial iron transcriptional regulator protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414410|gb|ADZ71473.1| Rhizobial iron transcriptional regulator protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 146

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+RTD  +R+L++ A+H      + +I +        +   +Q L + G + +  GR
Sbjct: 1   MRFTERTDIAVRLLLFLALHKGAKLSVDEIVDRYLGHRSQVVAAIQDLRRGGYIGSSPGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGV L R A +IT+ ++V+  E  F +  CF    K  C +   C     L +AL +FF
Sbjct: 61  SGGVWLVRSAHEITLAEIVRMFETDFHLTRCFKDGVKARCLIYDVCVFKQALERALGSFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
            VL + +I  L+ +   + ++   G
Sbjct: 121 AVLEETTIADLIEDEGRMLQVMEMG 145


>gi|253698991|ref|YP_003020180.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251773841|gb|ACT16422.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 152

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
            +GG  L +  D+IT+  VV+ATE    + +C    K +C   GSC   +V  ++   LN
Sbjct: 61  PQGGYCLAKSPDEITVRAVVEATEGDTLIVDCAGRKKGECSFDGSCVTQTVWEESNNRLN 120

Query: 117 AFFDVLT 123
            FF+ +T
Sbjct: 121 EFFESIT 127


>gi|330721810|gb|EGG99788.1| Nitrite-sensitive transcriptional repressor NsrR [gamma
           proteobacterium IMCC2047]
          Length = 142

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY  RVL+Y  ++     + + +IAE   +    L K++Q L KAG + T+RG
Sbjct: 1   MQLTRHTDYAFRVLIYLSSVEEGKLSTVGEIAEIFQVPINHLTKVVQQLGKAGFIITLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    + I +  VV+A E +     C  S  + C L  +C L  +L +A+ +F 
Sbjct: 61  KNGGIRLAHDPESILLGSVVRAMEATLDPVNC--SQPL-CRLKINCRLKPILNRAIQSFI 117

Query: 120 DVLTQYSIECLVRNRS 135
           + L +Y++  + +N+ 
Sbjct: 118 ETLDEYTLADISQNKE 133


>gi|166711249|ref|ZP_02242456.1| hypothetical protein Xoryp_07195 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 152

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  I+++++V+A E    + EC  +H   C +  +CG+ S  R   +   D
Sbjct: 62  HGGYRLARAASDISLVEIVEAMEGPLAITECSQNHS-QCGIAHTCGVRSNWRLINDVVGD 120

Query: 121 VLTQYSIECLVR 132
            L   ++  +++
Sbjct: 121 ALRHVTLAQMLQ 132


>gi|325925546|ref|ZP_08186934.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
           91-118]
 gi|325544050|gb|EGD15445.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
           91-118]
          Length = 172

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG 
Sbjct: 22  LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 81

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D
Sbjct: 82  HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGD 140

Query: 121 VLTQYSIECLVR 132
            L + ++  +++
Sbjct: 141 ALRRVTLAQMLQ 152


>gi|330003373|ref|ZP_08304594.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
 gi|328537001|gb|EGF63292.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
          Length = 156

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 16  VQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA QI + DVV+  E    V  C +     C +  +C L   L +A  +F 
Sbjct: 76  KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 131

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 132 KELDNYTLADLVEKNQPLYKLL 153


>gi|222055720|ref|YP_002538082.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221565009|gb|ACM20981.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 137

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR ++Y A  +  P +   IS+IA A  + + FL KI Q   K GI+ + 
Sbjct: 2   MELTRKGEYAIRGIIYLAQQS--PGKVSLISEIALATDVPQTFLAKIFQSFAKLGIINSS 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RPA  IT+  VV+A E       C       C   G C + +V R   + 
Sbjct: 60  RGTGGGFVLGRPASSITLRQVVEAVEGPIIPNRCLMDSGA-CDRGGYCNVHNVWRTVQSN 118

Query: 118 FFDVLTQYSIECLVRNRSS 136
              +L   +IE L + R+S
Sbjct: 119 VIGILDSVTIEELAKPRAS 137


>gi|308188263|ref|YP_003932394.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
 gi|308058773|gb|ADO10945.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
          Length = 147

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y  A+       I+++     +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYLAALPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  P  QI I DVV+  E    V +C +     C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMPPRQIVIGDVVRKMEPLQLV-DCAS-----CSITPACRLKQALHDAVQRFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV   + + +I 
Sbjct: 115 QELDSYTLADLVEGNTPLYEII 136


>gi|114566820|ref|YP_753974.1| rrf2 family protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337755|gb|ABI68603.1| transcriptional regulator, BadM/Rrf2 family [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 137

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +T++T+Y I++L+  A        P+++  IAE   I  +FL K +Q L +AG+V T 
Sbjct: 1   MQITRQTEYAIKILIELAKSPFGELIPSKL--IAEQQDIPGMFLQKTVQLLSRAGLVSTQ 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG +GGVRL   AD+ITI +V+ A E    +  C  S    CP +  C +  +L +A  A
Sbjct: 59  RGIQGGVRLTVSADKITIANVITAIEGPLALNLCL-SPGYSCPNMTDCQVRHILGRAQAA 117

Query: 118 FFDVLTQYSIECLVRNR 134
               L Q SI  +V  +
Sbjct: 118 LLHELQQESIADIVEGK 134


>gi|290473406|ref|YP_003466272.1| hypothetical protein XBJ1_0326 [Xenorhabdus bovienii SS-2004]
 gi|289172705|emb|CBJ79476.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 139

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G+V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSNLGLVNAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I DVV++ E    V  C A     C +  +C L  VL +A+  F 
Sbjct: 61  KNGGISLGKPASEIKIGDVVRSLEPLSLV-NCSA-----CYITPACRLKLVLNQAVENFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L ++++  +V++   + ++  A
Sbjct: 115 QELDKHTLADMVKDNRPLYQLLLA 138


>gi|225874112|ref|YP_002755571.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793907|gb|ACO33997.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 151

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+ DYG+  + Y A H   P+R ++ IAEA  I    L KILQ L + G++ +  G
Sbjct: 2   LRLTKKADYGLMAVKYLAEHAGEPSRSAKDIAEAYHIPAQLLAKILQKLTREGLLRSHAG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I+  +V++A +   F+  C     + C L  SC +   L +   +  
Sbjct: 62  MNGGYSLTRAAKDISAFEVIRAIDGPLFITSCTTGTSV-CDLTASCTIKEPLARVNESII 120

Query: 120 DVLTQYSIECLV 131
           D+L +  I  L+
Sbjct: 121 DLLRKTRISDLM 132


>gi|157371753|ref|YP_001479742.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323517|gb|ABV42614.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 180

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +YGI  L++    N       ++AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   YITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPAD+IT L+++ A E    + +C         F  +  D  L G C + +V+ 
Sbjct: 63  GGYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVML 122

Query: 113 KALNAFFDVLT 123
           +A  A  D L 
Sbjct: 123 QAEKAMRDALA 133


>gi|188491831|ref|ZP_02999101.1| transcriptional repressor NsrR [Escherichia coli 53638]
 gi|188487030|gb|EDU62133.1| transcriptional repressor NsrR [Escherichia coli 53638]
          Length = 141

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|149197247|ref|ZP_01874299.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
 gi|149139793|gb|EDM28194.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
          Length = 132

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L++ A + +     ++++E   I++  + +I+  L K G +   RGR
Sbjct: 1   MRLNLKTDYALRILLHAAKNKEKLITSTEVSERYNITQANVTQIVNALKKKGYLNVKRGR 60

Query: 61  RGG-VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG   L  P +++ I +++K  E    + +CF + +  CP++ SC L  ++   LNAF 
Sbjct: 61  YGGGFTLSDPPEEMRIGNIIKDIEPDLDLVQCFNNERNTCPVIDSCKLAGLMYSGLNAFL 120

Query: 120 DVLTQYSIECLV 131
           + + + ++  ++
Sbjct: 121 EKMNEQTLADII 132


>gi|156932409|ref|YP_001436325.1| transcriptional repressor NsrR [Cronobacter sakazakii ATCC BAA-894]
 gi|156530663|gb|ABU75489.1| hypothetical protein ESA_00188 [Cronobacter sakazakii ATCC BAA-894]
          Length = 166

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TD+G+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 26  VQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+   E   +  C ++    C +  +C L  VL  A+  F 
Sbjct: 86  KNGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 141

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV+    + K+ 
Sbjct: 142 QELDNYTLADLVQENQPLYKLL 163


>gi|304404495|ref|ZP_07386156.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346302|gb|EFM12135.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 133

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y       PNR   + Q+AE   +S  +L KIL  LVKAG+VE+ 
Sbjct: 1   MKYSKATNYALHTMLYLMAAT--PNRPIGVQQLAERQDVSSTYLSKILTKLVKAGMVESA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
            G  GG RL R  +QI+ LD++ A E +  + +C   H   CP+
Sbjct: 59  SGANGGYRLKRDWEQISFLDIIHAIEGTASIFDCSFDHGPQCPI 102


>gi|332968974|gb|EGK08018.1| transcriptional repressor NsrR [Kingella kingae ATCC 23330]
          Length = 147

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT++TDY +RVL+Y AI++D    I++IA+   IS+  L K++  LVK G + ++RG+
Sbjct: 1   MHLTQQTDYALRVLIYAAINDDGLVNIAEIAKVYNISKSHLMKVVTALVKGGFLYSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I + +VV+   E   + ECF     +C +   C L  +L   L  F  
Sbjct: 61  GGGLRLGKPTAEINVGEVVRLM-EPLTIVECFGDRN-ECLISPHCRLAGILNSGLKVFLS 118

Query: 121 VLTQYSIECLVRNRS 135
            L +Y++  L+ + +
Sbjct: 119 HLDKYTLADLINSDT 133


>gi|218887677|ref|YP_002436998.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758631|gb|ACL09530.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 150

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A+H  D P  I  IA+   IS  +L K+++ L KAG + +  G
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHGTDAPVSIRDIAKRQGISVKYLEKLIRVLRKAGYIRSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA +I + DVV A EES     C   +   CP +  C   ++  +A  A +
Sbjct: 61  AHGGYQLTQPASEIPVGDVVFALEESLAPYTCDEENPC-CPRMAVCLTRTIWDEASRAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L  +++  L+R+ S
Sbjct: 120 KKLNSFTLADLMRDAS 135


>gi|325123611|gb|ADY83134.1| hypothetical protein BDGL_002548 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 147

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL--VKAGIVETVR 58
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  +   K   + T+R
Sbjct: 1   MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKHKQEWIITIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F
Sbjct: 61  GKGGGIRLNPEALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESF 117

Query: 119 FDVLTQYSI-ECLVRNRSS 136
           +  L QY++ E L +++S+
Sbjct: 118 YQSLDQYTLGEVLQQSKSA 136


>gi|46198394|ref|YP_004061.1| rrf2 family protein [Thermus thermophilus HB27]
 gi|55980424|ref|YP_143721.1| rrf2 family protein, transcriptional regulator [Thermus
           thermophilus HB8]
 gi|46196016|gb|AAS80434.1| rrf2 family protein [Thermus thermophilus HB27]
 gi|55771837|dbj|BAD70278.1| rrf2 family protein, transcriptional regulator [Thermus
           thermophilus HB8]
          Length = 149

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L  AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRAPRAVPLKEVAEAQGISQHYLEQIAAQLRNAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP +++T L+VV+A E S     C    +  C  VG C    + R+   A   
Sbjct: 61  KGGYRLARPPEKVTALEVVEALEGSLAPVSCLEDPE-SCDKVGRCSTELLWRRVDLAMRQ 119

Query: 121 VLTQYSIECLVRNR 134
           VL   +++ L+  R
Sbjct: 120 VLGGTTLKDLIEER 133


>gi|78223138|ref|YP_384885.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194393|gb|ABB32160.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 135

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ +Y IR +++ A     P +   IS+IAEA  + + FL KILQ   K GIV++ 
Sbjct: 2   MELTRKGEYAIRGIIHLA--QLPPGKVALISEIAEATDVPQTFLAKILQSFAKIGIVQSF 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L R A +IT+ +VV+A E       C       C    +CG+  V R+    
Sbjct: 60  RGAGGGFMLGRSASRITLREVVEAVEGPILPNRCLIGSG-TCERDSTCGVHPVWRQVQQR 118

Query: 118 FFDVLTQYSIECLVRNR 134
             +VL   +IE L  ++
Sbjct: 119 VVEVLDGVTIEDLATHK 135


>gi|146297253|ref|YP_001181024.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410829|gb|ABP67833.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 150

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIATLKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   AEC     K+DCP    C    V  K   A   
Sbjct: 64  GGYMLSREPSKITIGEILRALEGSLSPAECIDDIEKVDCPRADFCVTKKVWEKVKKAIES 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSITLQDLVDD 136


>gi|313905754|ref|ZP_07839113.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469360|gb|EFR64703.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 173

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  YG+R L+  A + D     +Q IA+   ISE +L ++++ L K+G+V +VRG
Sbjct: 1   MKLTTRGRYGLRALIDLAENQDGGAVSTQSIAQRQDISESYLEQLIRMLKKSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG RL R AD+I++ DV+++ E S    EC A    DC     C +T ++ K +N
Sbjct: 61  AGGGYRLSRAADEISVGDVLRSLEGSLEAVECPAIVGDDCSSADEC-VTKIVWKRIN 116


>gi|318607414|emb|CBY28912.1| nitrite-sensitive transcriptional repressor NsrR [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 125

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           ISQ+ E   +S   + KI+  L + G+V  VRG+ GG+RL +PADQI I DVV+  E   
Sbjct: 12  ISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQIRIGDVVRQLEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L  VL +A+ +F + L  Y++  +V++ + + K+ 
Sbjct: 72  LV-NCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVQDNTPLYKLL 122


>gi|254393536|ref|ZP_05008671.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326439617|ref|ZP_08214351.1| rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
 gi|197707158|gb|EDY52970.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 150

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R+ M  A+H+D P   + ++A A  +      K++  L   G+VE  RG
Sbjct: 1   MRLTKGTDLALRIAMRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +V+  E +  V  C       CPL  +C L SVLR A  AF+
Sbjct: 61  RGGGLALTTAGRTGSIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFY 118

Query: 120 DVLTQYSIECLV 131
             L  Y+++ LV
Sbjct: 119 TALDPYTVDDLV 130


>gi|87198175|ref|YP_495432.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133856|gb|ABD24598.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 167

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD G+R+L+  A      +  +  AE   +S   + K+ Q LV  G   + RGR
Sbjct: 19  MQLTQHTDLGLRLLIVLARKGAAVSLPAFSAEQG-LSYHHVAKVAQALVHEGFATSQRGR 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R A  I + DVV+A E    +A+C       C L   CGL+ VL +AL AF  
Sbjct: 78  SGGIALAREATNIRVGDVVRALERGMRLADCGG-----CALRADCGLSGVLAEALEAFMA 132

Query: 121 VLTQYSIECLVRN 133
           VL +Y++  + R 
Sbjct: 133 VLDRYTLADVSRE 145


>gi|308070540|ref|YP_003872145.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859819|gb|ADM71607.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 132

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y +  +LM  A  +  P  + Q+AE+  +S  +L KIL  LVKAG++E+V G
Sbjct: 1   MKFTKATNYALHTMLMLVADSSVKPVGVQQLAESQNVSPTYLSKILTRLVKAGMIESVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG RL R  D IT LD++ A E +  + EC   H  +C
Sbjct: 61  ANGGYRLSRHKDDITFLDIIHAIEGTNSLFECDFVHGSEC 100


>gi|77918038|ref|YP_355853.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544121|gb|ABA87683.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 154

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56
           M +T+ T+Y IR +++ A     P   + + +  C    I+  FL KILQPL+K GIV +
Sbjct: 1   MIITRATEYAIRAVLFMATQ---PRGETVLKKDICREQEITPAFLTKILQPLIKQGIVGS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG  GG  L +    IT+LDV+KA E   ++  C A  + +C    +C +  V R+A  
Sbjct: 58  HRGIGGGFYLAKDPADITLLDVIKAEEGPIYLNLCLA-EETNCNREPTCPVNRVWREART 116

Query: 117 AFFDVLTQYSIECLVR 132
               VL +YS   L R
Sbjct: 117 QLLAVLDRYSFADLCR 132


>gi|163740100|ref|ZP_02147503.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
           BS107]
 gi|161386649|gb|EDQ11015.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
           BS107]
          Length = 149

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L+  A   +    I  ++    +    + KI+  LV+ G V ++RGR
Sbjct: 1   MKLNLKTDYALRLLILLATRPEQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV++ R   +I + D+V A  E   + +C +     C LVG+C L  VL +A  AF +
Sbjct: 61  SGGVQIGRKPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115

Query: 121 VLTQYSIECLV 131
           VL  Y +  L+
Sbjct: 116 VLMAYRLSDLI 126


>gi|33593212|ref|NP_880856.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33563587|emb|CAE42488.1| putative conserved DNA-binding protein [Bordetella pertussis Tohama
           I]
 gi|332382623|gb|AEE67470.1| putative DNA-binding protein [Bordetella pertussis CS]
          Length = 145

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD+G+RV+MY     D   P  I +IA    IS   L K++  L + G +   R
Sbjct: 1   MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A +  I ++V+  E+   +  C    +  C L G+C L+  L ++L AF
Sbjct: 61  GKGGGLRLARDAVEYRIGELVRVLEDQGALVNC---AQPPCVLNGACRLSGALAESLQAF 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
           +  L  Y+++ LVR  +++
Sbjct: 118 YRTLDGYTLDDLVRAPTAL 136


>gi|303249012|ref|ZP_07335257.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302489598|gb|EFL49538.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 145

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H  + P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLLDIALHGGERPVRIQDIAKRRNISVKYLEQLIRALKKAGFINSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L  P ++I + DVV+A E    + EC  + +  C + G C    +  +A  + F
Sbjct: 61  PRGGHVLAMPPEEIRVGDVVRALESRPELTECVGNPET-CLIAGDCVTRRIWARATESLF 119

Query: 120 DVLTQYSI 127
             L    I
Sbjct: 120 RELDAIRI 127


>gi|262045389|ref|ZP_06018413.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037307|gb|EEW38554.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 156

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 16  VQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA QI + DVV+  E    V  C +     C +  +C L   L +A  +F 
Sbjct: 76  KNGGIRLGKPAGQIRVGDVVRDLEPLSLV-NCSSEF---CHITPACRLKQALAEAAQSFL 131

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y +  LV     + K+ 
Sbjct: 132 KELDNYMLADLVEKNQPLYKLL 153


>gi|78043306|ref|YP_359262.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995421|gb|ABB14320.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 142

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK+ +Y +  LM  A +       +  +AE   + E FL KI+Q LVKAG+V TV+G
Sbjct: 1   MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLVKAGLVYTVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GGV L +  ++IT+L+VV+A E    +++C  +H   C  V  C L  +  K      
Sbjct: 61  PQGGVALLKDPEKITVLEVVEAVEGPIVLSQCI-NHPDICEKVEICPLHKIWHKVQQKLI 119

Query: 120 DVLTQYSIECLVRN 133
           +  + +++  L + 
Sbjct: 120 EEFSSHNLLTLSKE 133


>gi|261367832|ref|ZP_05980715.1| iron-sulfur cluster assembly transcription factor IscR
           [Subdoligranulum variabile DSM 15176]
 gi|282570636|gb|EFB76171.1| iron-sulfur cluster assembly transcription factor IscR
           [Subdoligranulum variabile DSM 15176]
          Length = 138

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 4/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R  Y +R+++  A H D    + +I++   IS  +L +I+ PL KAG+V +VRG 
Sbjct: 1   MKFSTRDRYALRLMVELANHGDGLVPLKEISDTQQISLKYLEQIITPLAKAGLVTSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117
           +GG RL RP ++IT  ++++A E       C  ++ ++CP    C   G    L   +N 
Sbjct: 61  QGGYRLARPEEEITAGEILRAVEGELTAIPCLGAN-MECPRRDQCQTIGFWCGLNDLINQ 119

Query: 118 FFDVLT 123
           + D +T
Sbjct: 120 YVDGVT 125


>gi|218531426|ref|YP_002422242.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Methylobacterium chloromethanicum CM4]
 gi|218523729|gb|ACK84314.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           chloromethanicum CM4]
          Length = 183

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +HL+  TDYG+R+LM+  +           +A+   IS   L KI Q LV+AG+VE  +G
Sbjct: 20  LHLSLHTDYGLRLLMHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGVRL R A +I +  +V   E    VA+C    +  CPL+G C L      A  AFF
Sbjct: 80  RSGGVRLARDAREIRLGRLVADLEGVGTVADC---RRDPCPLLGRCRLKWAFDAAEQAFF 136

Query: 120 DVLTQYSIECLVRNRS--SIKKIFNA 143
             L + ++  +V   +  +++ +F A
Sbjct: 137 LELDRLTLADVVAGPTAAALRSLFRA 162


>gi|302871528|ref|YP_003840164.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574387|gb|ADL42178.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 150

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   +EC     K+DCP    C    V  K   A  +
Sbjct: 64  GGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIEN 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSVTLQNLVDD 136


>gi|28899582|ref|NP_799187.1| transcriptional repressor NsrR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839631|ref|ZP_01992298.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
 gi|260361405|ref|ZP_05774467.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           K5030]
 gi|260876677|ref|ZP_05889032.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896630|ref|ZP_05905126.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           Peru-466]
 gi|260900889|ref|ZP_05909284.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AQ4037]
 gi|731996|sp|P40610|NSRR_VIBPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|507739|gb|AAA62191.1| unnamed ORF; similar to ORF 3' of E.coli PurA and ORF 5' of
           Shigella flexneri VacB: Swiss-Prot Accession Number
           P21498 [Vibrio parahaemolyticus]
 gi|28807818|dbj|BAC61071.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746852|gb|EDM57840.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
 gi|308086327|gb|EFO36022.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           Peru-466]
 gi|308093960|gb|EFO43655.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AN-5034]
 gi|308106515|gb|EFO44055.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AQ4037]
 gi|308112892|gb|EFO50432.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           K5030]
          Length = 141

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    V  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVEF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L + +IE L+ + S +
Sbjct: 117 AELDECTIESLLSDNSEL 134


>gi|33596274|ref|NP_883917.1| putative DNA-binding protein [Bordetella parapertussis 12822]
 gi|33602066|ref|NP_889626.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33566043|emb|CAE36939.1| putative conserved DNA-binding protein [Bordetella parapertussis]
 gi|33576504|emb|CAE33582.1| putative conserved DNA-binding protein [Bordetella bronchiseptica
           RB50]
          Length = 156

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD+G+RV+MY     D   P  I +IA    IS   L K++  L + G +   R
Sbjct: 12  MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 71

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A +  I ++V+  E+   +  C    +  C L G+C L+  L ++L AF
Sbjct: 72  GKGGGLRLARDAVEYRIGELVRVLEDQGALVNC---AQPPCVLNGACRLSGALAESLQAF 128

Query: 119 FDVLTQYSIECLVRNRSSI 137
           +  L  Y+++ LVR  +++
Sbjct: 129 YRTLDGYTLDDLVRAPTAL 147


>gi|226322609|ref|ZP_03798127.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
 gi|225208946|gb|EEG91300.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
          Length = 147

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R  +  A +  + P  IS I+    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKISTKGRYGLRAFIDLACYGAEEPVSISSISARQEISERYLEQLMAKLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG RL + A ++++ DV++A E     A C A H  D C + GSC    V +K   + 
Sbjct: 61  AGGGYRLAKDAAEVSVGDVLRALEGDLEPATCAALHSEDSCEIQGSCITKYVWKKVNESM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              +    I  LV     +KK
Sbjct: 121 AQTVDSIMINTLVEMNKEVKK 141


>gi|92113358|ref|YP_573286.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796448|gb|ABE58587.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
           salexigens DSM 3043]
          Length = 155

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY   V+   A H +  +  +++A+A  +    + K L+ LVKAG++E+ RG 
Sbjct: 2   LKLSKLTDYAAVVMAQIARHPEQAHAATELADAVQLPHPTVSKTLKMLVKAGLLESRRGS 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRK---ALN 116
            GG RL RPA  IT  D++ A E    + EC  SH   DC L+ +CG+    ++   A+ 
Sbjct: 62  LGGYRLARPAAAITASDIIGAIEGPVAMTEC--SHADGDCDLLATCGVADNWQRVSLAIR 119

Query: 117 AFFDVLT 123
              D +T
Sbjct: 120 TLLDSVT 126


>gi|331002201|ref|ZP_08325720.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411295|gb|EGG90711.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 154

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 82/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  Y +++++  AI+++ P +I+Q++++  ISE +L +I+  L KA +V+++RG 
Sbjct: 1   MKISTRGRYALKMMVEFAINSNSPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +P ++ T+ ++++ TE S    +C   +   C     C   ++ +K  +A  +
Sbjct: 61  QGGYLLVKPVEEYTVGEILRLTEGSLSPVDCLDGNG-SCVHSDFCVTQNLFKKVEDAINN 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           V+   S++ LV +   I+K
Sbjct: 120 VVDNISLQDLVDDELDIRK 138


>gi|310643721|ref|YP_003948479.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309248671|gb|ADO58238.1| Putative transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 132

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y +  +LM     +  P  + Q+AEA  +S  +L KIL  LVKAG++E+V G
Sbjct: 1   MKFTKATNYALHTMLMLVTDSSVKPIGVQQLAEAQQVSPTYLSKILTRLVKAGMIESVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG RL R  D IT LD++ A E +  + EC   H  +C
Sbjct: 61  ANGGYRLSRNKDDITFLDIIHAIEGTNSLFECDFVHGSEC 100


>gi|312135466|ref|YP_004002804.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           owensensis OL]
 gi|311775517|gb|ADQ05004.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           owensensis OL]
          Length = 150

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   +EC     K+DCP    C    V  K   A  +
Sbjct: 64  GGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIEN 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSVTLQDLVDD 136


>gi|220922121|ref|YP_002497422.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219946727|gb|ACL57119.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 153

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y        + I+++A A  ISE  L K++  L + G+V T RGR
Sbjct: 1   MRLTCFTDYALRTLIYLGTAEPRQSSIAEVARAYGISENHLVKVVHQLGRLGLVRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + A +I I +VV+ATEE   + +CFA     C +  +C L +VL +AL AFF 
Sbjct: 61  GGGLRLGKAAAEIRIGEVVRATEEDLALVQCFAGGS--CAITPACRLRNVLGEALAAFFA 118

Query: 121 VLTQYSIECLVRNRSS 136
           VL +Y++  L+   + 
Sbjct: 119 VLDRYTLADLLEPHAG 134


>gi|239908516|ref|YP_002955258.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239798383|dbj|BAH77372.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 148

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+H  + P RI  IA    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALHGQNGPVRIKDIAARQGVSVKYLEKLVRDLKEAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L +P D I++ D+V+A E    + EC       CP    C    V  +A  A  
Sbjct: 61  PRGGHELDKPLDAISVGDIVRALEGDLSLVEC-GDETGPCPRQADCLTRGVWMEAARAMH 119

Query: 120 DVLTQYSIECLV 131
           + L   ++  LV
Sbjct: 120 EKLDSITLADLV 131


>gi|152981815|ref|YP_001352304.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151281892|gb|ABR90302.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 152

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +D G+RVLMY A  +  P+  ++++A    +    L K++  L K G ++ VRG
Sbjct: 1   MKLTRFSDIGLRVLMYLARESRSPSVTVAEVALQFDVPHNHLVKVVGMLAKMGWIDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L    D + I  +++  E     AE      I C L G C L + L+  ++AF+
Sbjct: 61  RNGGISLAASPDTLHIGSILRVLEGD---AEAIDCEGIGCRLSGDCRLRNALKIGVDAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + + +Y++  +V   + 
Sbjct: 118 NAMDEYTLADIVSGNTG 134


>gi|239906274|ref|YP_002953014.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239796139|dbj|BAH75128.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 145

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H D  P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLLDIALHGDEGPVRIQDIAKRRGISVKYLEQLIRALKKAGFINSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L  PA+ I + DVV+A E    + EC  + ++ C +   C    +  +A  + F
Sbjct: 61  PKGGHVLATPAEAIRVGDVVRALESRPELTECVGNPEV-CMISTDCVTRQIWARATESIF 119

Query: 120 DVLTQYSI-ECLVRNRSS 136
             L    + + LV+ R S
Sbjct: 120 RELDAIHLSDLLVQARRS 137


>gi|330990683|ref|ZP_08314639.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329762123|gb|EGG78611.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 135

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT RTD   RVL++ A H    +R+  S I+E   +S   L K+++ L   GI+   R
Sbjct: 1   MRLTLRTDLAFRVLIHLARHARAQDRVTVSHISERHNLSHNHLVKVVKELCHHGILVGTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           GR GG+RL R    I I  +V+  E E   +  C   +   C L  SC L  ++R+A +A
Sbjct: 61  GRNGGIRLARHPKDINIGHIVRLMETEGEVMTGCAPLYGRPCVLADSCRLRHLIRQATDA 120

Query: 118 FFDVLTQYSIECLV 131
           F  +L   S++ L+
Sbjct: 121 FMVILDGMSVQDLL 134


>gi|78355694|ref|YP_387143.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218099|gb|ABB37448.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 146

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R+ YG R+L+  A+H   +D P  I +IA+   IS  +L K+++ L  AG + + 
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRVLKGAGYISSR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G +GG  L RP + I + DVV A EE+    EC       CP +  C   ++  +A  A
Sbjct: 61  LGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPEPC-CPRMDYCLTRTIWNEAAKA 119

Query: 118 FFDVLTQYSIECLVRN 133
            ++ L  +++  L+ +
Sbjct: 120 MYEKLNSFTLADLIND 135


>gi|328472291|gb|EGF43161.1| transcriptional repressor NsrR [Vibrio parahaemolyticus 10329]
          Length = 141

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    V  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVEF---CHITPACRLKDKLAKAKRAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L + +IE L+ + S +
Sbjct: 117 AELDECTIESLLSDNSEL 134


>gi|187933794|ref|YP_001885366.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
 gi|188588800|ref|YP_001920513.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|251778728|ref|ZP_04821648.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|187721947|gb|ACD23168.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
 gi|188499081|gb|ACD52217.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|243083043|gb|EES48933.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 147

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A  +   P  I  I++   +SE +L ++  PL KA I+ ++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLAFNYGGPPTSIKTISKRQNLSEYYLEQLFSPLRKANIIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+P  +IT+ D++   E    +A+C     ++C  V SC    + +K  ++  
Sbjct: 61  AQGGYVLCKPPSEITVGDIMHVLEGPVEIADCI--DGVECSNVDSCATKLLWQKIKDSID 118

Query: 120 DVLTQYSIECLVRN----RSSIK 138
           DV+   +++ ++ +    R+SI+
Sbjct: 119 DVMNSITLKDIIDDYEGARASIE 141


>gi|322437255|ref|YP_004219467.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
 gi|321164982|gb|ADW70687.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
          Length = 163

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA----------IHNDYPNRISQIAEACCISELFLFKILQPLVK 50
           + LTK+ DYG+  L Y A           HN Y      IAEA  I    L KILQ L K
Sbjct: 2   LRLTKKADYGLMALKYLAEQAAATSGNAAHN-YAQSAKDIAEAYHIPPQLLAKILQTLAK 60

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
            G++ +  G  GG  L R A +I+  +V++A +   F+  C   H   C L   C +   
Sbjct: 61  GGLLVSHAGTNGGYALARSAAEISAFEVIRAIDGPLFITSCITIHGT-CDLDSHCTIKEP 119

Query: 111 LRKALNAFFDVLTQYSIECLV 131
           LRK  ++  D+L+   I  L+
Sbjct: 120 LRKVNDSIKDLLSAIRIADLI 140


>gi|254037192|ref|ZP_04871269.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 1_1_43]
 gi|226840298|gb|EEH72300.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 1_1_43]
          Length = 161

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 21  VQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A  I I DVV+  E    V  C +     C +  +C L   L KA+ +F 
Sbjct: 81  KNGGIRLGKSASAIRIGDVVRELEPLSLV-NCSSEF---CHITPACRLKQALSKAVQSFL 136

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 137 TELDNYTLADLVEENQPLYKLL 158


>gi|190573183|ref|YP_001971028.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|190011105|emb|CAQ44714.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
          Length = 151

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           RGG RL RPA +I++ +VV+A E    + EC   H   C +   CG  S  R
Sbjct: 62  RGGYRLTRPAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112


>gi|148555866|ref|YP_001263448.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501056|gb|ABQ69310.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 179

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H+T   +YGI  L++     D       +AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HITTSVEYGIHCLLWLVGSGDRAMSSRDLAELQGISPSFLAKIFPKLEKAGIVVASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPAD I+ LD+V A E    + +C         FA         G C +  V+ 
Sbjct: 63  GGYRLARPADAISFLDIVDAIEGEKPLFDCQEVRERCALFAGGMPAWATDGVCAVHGVML 122

Query: 113 KALNAFFDVLTQYSIE 128
           +A  A  D L   S++
Sbjct: 123 QAEKAMRDALAAQSLQ 138


>gi|296135927|ref|YP_003643169.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|295796049|gb|ADG30839.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 154

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD+G+R LM  A + D      ++A+   IS   L K+LQ L   G V+  RG 
Sbjct: 1   MKLTQFTDFGLRALMVLAENPDQSLNSKELAKILDISREHLVKVLQRLAAGGYVQNQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL + A +I + +VV+  E+   + EC       C L   C L  +L  A  AF+ 
Sbjct: 61  NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120

Query: 121 VLTQYSI-ECL 130
            L   ++ +CL
Sbjct: 121 RLNTSTLADCL 131


>gi|103486029|ref|YP_615590.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976106|gb|ABF52257.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 143

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +R+LM  A   +  + + +IA    IS   L K+ Q L   G V   RGR
Sbjct: 1   MRLSLHSDYALRILMALAATGEQMS-VDEIASHYGISRNHLAKVAQRLQALGYVSAQRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R   ++    VV+  E    + EC       CP+ G CGL   L  AL AF  
Sbjct: 60  GGGLTLARAPSEVIAGTVVREFENLGGLVECMDPATSTCPVRGGCGLQGALGGALAAFLA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L +Y++  L+   +  + +  A
Sbjct: 120 HLDRYTLADLLPQPARFRALLGA 142


>gi|330992598|ref|ZP_08316546.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760797|gb|EGG77293.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 145

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA+   IS+  L K++  L   G+V   RGR
Sbjct: 1   MRLTLHTDYSIRALIYLGQNPGRRVAIQEIADTHRISQNHLVKVINRLSTNGVVLARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GGV L     QI I DVV+  E     +  C       C L  +C L  +  K++NAF 
Sbjct: 61  NGGVELAHTPRQIVIGDVVRLMESDVSAIVSCIPGSGQQCILADACRLRKLFSKSMNAFM 120

Query: 120 DVLTQYSIECLV 131
            VL + ++  ++
Sbjct: 121 AVLDRLTLHDML 132


>gi|111019257|ref|YP_702229.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818787|gb|ABG94071.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 158

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A+  D     S+ IAE   +S     K++  L + GIV+  RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYAHAAKVITRLSELGIVDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       ++  + +  E    V +C  +    CPL   C L S LR+A NAFF
Sbjct: 61  RAGGLAITELGRTASVGWLARRLEGDAEVVDCDGAQP--CPLRSGCLLRSALRRAQNAFF 118

Query: 120 DVLTQYSIECLVRN 133
           + L   +IE L R+
Sbjct: 119 ESLDALTIEDLTRS 132


>gi|254521010|ref|ZP_05133065.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
 gi|219718601|gb|EED37126.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
          Length = 151

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           RGG RL RPA +I++ +VV+A E    + EC   H   C +   CG  S  R
Sbjct: 62  RGGYRLTRPALEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112


>gi|19223865|gb|AAL86367.1|AF332574_4 putative RRF2 protein [Desulfovibrio gigas]
          Length = 150

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YG R+++  A+H+   P RIS I++   +S  +L K+++PL +AG +++ RG
Sbjct: 1   MKLSTRSRYGTRMVLDIAMHSQAGPVRISDISKRQGVSVKYLEKLIRPLKQAGFIKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L    ++I +  VV+A E    + EC     + CP+ G C    V  +A  A  
Sbjct: 61  PRGGHVLSDLPERIAVGAVVRAMEGEMALTECAKDASV-CPISGDCLTRKVWIEATRAML 119

Query: 120 DVLTQYSIECLVRN 133
           D L   +   L+R 
Sbjct: 120 DRLDAITFLDLMRE 133


>gi|197116760|ref|YP_002137187.1| BadM/Rrf2 family transcriptional regulator [Geobacter bemidjiensis
           Bem]
 gi|197086120|gb|ACH37391.1| transcriptional regulator, BadM/Rrf2 family [Geobacter bemidjiensis
           Bem]
          Length = 152

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
            +GG  L +  ++IT+  V++ATE    + +C +  K +C   GSC   +V  ++   LN
Sbjct: 61  PQGGYCLAKSPEEITVRAVIEATEGDTLIVDCASRKKGECNFDGSCVTQTVWEESNNRLN 120

Query: 117 AFFDVLT 123
            FF+ +T
Sbjct: 121 EFFESIT 127


>gi|294340149|emb|CAZ88521.1| putative Transcriptional regulator [Thiomonas sp. 3As]
          Length = 154

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD+G+R LM  A + D      ++A    IS   L K+LQ L   G V+  RG 
Sbjct: 1   MKLTQFTDFGLRALMVLAENPDQSLNSKELARILDISREHLIKVLQRLAAGGYVQNQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL + A +I + +VV+  E+   + EC       C L   C L  +L  A  AF+ 
Sbjct: 61  NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120

Query: 121 VLTQYSI-ECL 130
            L   ++ +CL
Sbjct: 121 RLNTSTLADCL 131


>gi|317049750|ref|YP_004117398.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951367|gb|ADU70842.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 147

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYMATLPEGTQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    ++I I DVV+  E    V  C      +C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMDPEKIVIGDVVRKMEPLQLV-NCN-----ECSITPACRLRKALNDAVQLFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV+   S+ +I 
Sbjct: 115 RELDNYTLADLVKGNDSLYQIL 136


>gi|188026362|ref|ZP_02961812.2| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
 gi|188020109|gb|EDU58149.1| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
          Length = 165

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G V+  RG
Sbjct: 26  VQLTSFTDYGLRALIYLASLPEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYVKATRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA+ I + DVV+A E    V  C       C +  +C L  VL +A+  F 
Sbjct: 86  KNGGITLGQPAETIRVGDVVRALEPLTLV-NCSGEF---CHITPACRLKGVLHQAIQQFL 141

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L ++++  +V++ S + ++ 
Sbjct: 142 KELDKHTLADMVKDNSPLYQLL 163


>gi|159044849|ref|YP_001533643.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912609|gb|ABV94042.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 139

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 68/127 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   +     + +AE   +S   L KI+Q L +AGIVET RG 
Sbjct: 1   MRLTSFTDYGLRMLMRMASAPERAFSTADLAEEFDLSRHHLSKIMQRLSRAGIVETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +PA ++ +  V+   E+   + ECF S    C +   CGL + LR A  AF  
Sbjct: 61  GGGATLAQPASELRLGRVIAVLEQDQPIVECFGSGPHSCTIDRQCGLKARLRAAERAFLT 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 DLDRSTL 127


>gi|162454034|ref|YP_001616401.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
 gi|161164616|emb|CAN95921.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
          Length = 232

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+ +  YG+R L   A HND  P +I +I+E   I   FL +I Q L KAG++ + RG
Sbjct: 82  VKLSNKGRYGVRALFDIAFHNDGRPTQIREISERELIPARFLEQIFQDLKKAGLISSKRG 141

Query: 60  RRGGVRLCRPADQITILDVVKATE 83
            RGG  L RPA +I++ DVV+A E
Sbjct: 142 PRGGYHLARPASEISLGDVVRALE 165


>gi|239626143|ref|ZP_04669174.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520373|gb|EEQ60239.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 144

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++  AIH D  P +I  IA    IS  +L +I+  L +AG V ++RG
Sbjct: 1   MLVSTKGRYALRTMVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +PA + T+  +++ TE S    +C +  +  C     C    + R+   A  
Sbjct: 61  NQGGYYLAKPAAEYTVGMILRVTEGSLAPVDCLSGGENPCTRQMDCVTLRLWRELDEAIS 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+ +Y++E LV+ R ++K  +
Sbjct: 121 GVVDRYTLEDLVQWRRNMKDNY 142


>gi|299139059|ref|ZP_07032235.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX8]
 gi|298598739|gb|EFI54901.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX8]
          Length = 152

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+ DYG+  L Y A  + +       IAEA  I    L KILQ L K+G++ +  G
Sbjct: 2   LRLTKKADYGLMALKYLAEQSTNGAQSAKDIAEAYHIPPQLLAKILQTLAKSGLLVSHAG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I+  +V++A +   F+  C   H   C L G+C +   LRK  ++  
Sbjct: 62  TNGGYALARSAHDISAFEVIRAIDGPLFITSCITIHGT-CDLHGTCTIKEPLRKVNDSIK 120

Query: 120 DVLTQYSIECLVR 132
           ++L+   +  L+ 
Sbjct: 121 ELLSGIRVSDLIE 133


>gi|312793908|ref|YP_004026831.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877395|ref|ZP_07737360.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795869|gb|EFR12233.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312181048|gb|ADQ41218.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 150

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKNIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A  +
Sbjct: 64  GGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIEN 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSVTLQDLVDD 136


>gi|220931730|ref|YP_002508638.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
           H 168]
 gi|219993040|gb|ACL69643.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
           H 168]
          Length = 151

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 13/146 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R  YG+R ++  AIH D    P R  +IAE   ISE +L ++   L KAG+V++V
Sbjct: 1   MKISTRGRYGLRAMVDLAIHQDSGAIPLR--EIAERQQISEQYLEQLFANLRKAGLVKSV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSC---GLTSVLRK 113
           RG  GG  L R AD+IT  DV++  E      +C   +  D C L+  C    L   L+K
Sbjct: 59  RGAHGGYLLNRDADEITAGDVLRTLEGPIAPTDCVLDNDEDVCSLIDKCVTHELWVKLQK 118

Query: 114 ALNAFFDVLT----QYSIECLVRNRS 135
            ++   D +T    Q   + L+RN++
Sbjct: 119 QVSEILDSVTLRDLQERAKELIRNKN 144


>gi|210622565|ref|ZP_03293247.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
 gi|210154148|gb|EEA85154.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
          Length = 155

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+ + + P  I  I+E   +SE +L +I   L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLKAMFELALNYGEEPISIKYISEKQNVSERYLEQIFSKLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  D+I++ D++   E    +++C     + C     C    V +K  NA  
Sbjct: 61  SQGGYFLARKPDEISVGDILTVLEGPITISDCLKEEGV-CSNSDKCATRLVWKKMKNAID 119

Query: 120 DVLTQYSIECLVRNR 134
           DV+    ++ +V +R
Sbjct: 120 DVVNTTFLQDMVDDR 134


>gi|312127257|ref|YP_003992131.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777276|gb|ADQ06762.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 150

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A  +
Sbjct: 64  GGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIEN 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSVTLQDLVDD 136


>gi|302344575|ref|YP_003809104.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
           DSM 2075]
 gi|301641188|gb|ADK86510.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii
           DSM 2075]
          Length = 151

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R ++  A+HND  P  +  +A    IS  +L ++L PL  AG+V++VRG
Sbjct: 1   MKLSTRGRYGVRAMLELAMHNDDGPVPLRNLALRQEISAKYLEQLLIPLKGAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L      I++ D+V++ E      EC    +  C  VG C +  V  +      
Sbjct: 61  ARGGYQLAADPKDISLYDIVRSLEGPLAPVECVQDAEY-CQRVGGCTVHLVWGEMGQLLV 119

Query: 120 DVLTQYSI-ECLVRNRS 135
           D L++ S+ + +VR R 
Sbjct: 120 DFLSKMSLADMVVRQRE 136


>gi|255319821|ref|ZP_05361026.1| HTH-type transcriptional regulator NsrR [Acinetobacter
           radioresistens SK82]
 gi|262380353|ref|ZP_06073507.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303140|gb|EET82352.1| HTH-type transcriptional regulator NsrR [Acinetobacter
           radioresistens SK82]
 gi|262297799|gb|EEY85714.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 149

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R LMY +   + P  I++IA    IS   L KI+  + K G + T+RG+
Sbjct: 1   MQLNKFTDYALRSLMYISRPRNTPYTIAEIAVDLQISHNHLVKIVHFMGKQGWLITLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A    + D+V+  +    + EC +     C L   CGL  +L  A+  F+ 
Sbjct: 61  GGGIQLNPQALDSRVGDIVRILQGDQPIVECNSP---PCVLRSDCGLKGILDTAVEQFYQ 117

Query: 121 VLTQYSI 127
            L QY++
Sbjct: 118 SLNQYTL 124


>gi|296392911|ref|YP_003657795.1| BadM/Rrf2 family transcriptional regulator [Segniliparus rotundus
           DSM 44985]
 gi|296180058|gb|ADG96964.1| transcriptional regulator, BadM/Rrf2 family [Segniliparus rotundus
           DSM 44985]
          Length = 151

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+RV M   A  +      + +AE   +      K++  L   G+VE+ RG
Sbjct: 1   MQLTKFTDLGLRVTMLLAAAPSGRQLSTAHVAEQMRVPYTHAAKVVARLAGLGVVESARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL   A   +I  + +  E    V EC  ++   CPL   C L   LR+A  AFF
Sbjct: 61  RAGGLRLAESASSRSIGWIARRLEGDGEVVECEGAN--PCPLREGCRLRGALRQAQEAFF 118

Query: 120 DVLTQYSIECLVRN 133
            VL  +++  ++R 
Sbjct: 119 HVLDGWTVAEMIRT 132


>gi|291562648|emb|CBL41464.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SS3/4]
          Length = 143

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RVL+  A H  D    +   A    ISE +L  I++ LVKA ++E VRG
Sbjct: 1   MMVSTKGRYALRVLIDLAEHQTDGYIPLKDTAARQEISEKYLEGIIKILVKAKLLEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116
           + GG RL +  +Q T+  +++ TE S     C      DCP +GSC    L   L K +N
Sbjct: 61  KGGGYRLTKAPEQYTVGSILRLTENSMAPVACLEPGSTDCPRMGSCKTLPLWQGLDKVVN 120

Query: 117 AFFDVLTQYSIECLVRN 133
            + D +T   I  LV+N
Sbjct: 121 EYLDGVT---IADLVQN 134


>gi|291295978|ref|YP_003507376.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
           1279]
 gi|290470937|gb|ADD28356.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
           1279]
          Length = 159

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       +  +AEA  IS  +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRQPQAVPLKDVAEAQGISLHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP++ I  L+VV+A E S     C    ++ C   G C   ++ ++   A   
Sbjct: 61  RGGYRLGRPSEHIDALEVVEALEGSLAPVICLDDPEL-CWQTGHCSTETLWKRVDEAMRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 120 VLRSTTLKDLIEERRLIE 137


>gi|124268159|ref|YP_001022163.1| BadM/Rrf2 family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260934|gb|ABM95928.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
           petroleiphilum PM1]
          Length = 184

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YG+  L++     +       +AE   IS  F+ KI   L KAGIV    G R
Sbjct: 3   HLTSSVEYGLHCLLWLVDAGETQPSSRDLAELQGISPSFVAKIFPKLEKAGIVAASAGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPA++IT+LDVV A E    + +C         F          G C + +V+ 
Sbjct: 63  GGYRLARPAERITVLDVVDAIEGDKPLFDCQEIRGRCAVFEGEAPRWATGGVCAIHAVML 122

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  +  D L Q ++  L 
Sbjct: 123 RAEKSMRDALAQETLAGLA 141


>gi|297624030|ref|YP_003705464.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297165210|gb|ADI14921.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 149

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  YG+R L+  A+  +  + +  ++E   IS+ +L +I+  L +AGIVE+VRG 
Sbjct: 1   MWISTRAQYGMRALVEIALSGETTS-LKVVSERQGISQHYLEQIVAVLRRAGIVESVRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R+ RP  ++T L+VV+  E S     C       C   G+C   S+  +   A  +
Sbjct: 60  YGGYRMARPMHEVTALEVVELMEGSLAPVACIEDEAC-CEYTGNCSTQSLWERVDRAVRE 118

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +I  LV  R  ++
Sbjct: 119 VLGSTTIGDLVAERQLLQ 136


>gi|329297952|ref|ZP_08255288.1| transcriptional repressor NsrR [Plautia stali symbiont]
          Length = 147

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       I+++ +   +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDFGLRALIYMATLPQGQQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    ++I I DVV+  E    V  C      +C +  +C L S L  A+  F 
Sbjct: 61  KNGGIRLGMDPEKIVIGDVVRKMEPLQLV-NCK-----ECAINPACRLRSALNNAVQLFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
               +Y++  LV+N  S+  I 
Sbjct: 115 QEQDKYTLADLVQNNDSLYHIL 136


>gi|322417974|ref|YP_004197197.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320124361|gb|ADW11921.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 152

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
            +GG  L +  + IT+  V++ATE    + +C    K +C   GSC   +V  ++   LN
Sbjct: 61  PQGGYCLAKSPEDITVRAVIEATEGDTLIVDCSGRRKGECGFDGSCVTQTVWEESNSRLN 120

Query: 117 AFFDVLT 123
            FF+ +T
Sbjct: 121 EFFESIT 127


>gi|315649593|ref|ZP_07902678.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
 gi|315275066|gb|EFU38441.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
          Length = 133

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K TDY +  +++  A     P  + Q+AE   +S  +L KIL  LVKAG++E++ G
Sbjct: 1   MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
             GG RL R  + I+ LD++ A E S  + +C   H   CP+
Sbjct: 61  VNGGYRLKRNWEDISFLDIIHAIEGSASLFDCSFDHGPGCPI 102


>gi|270264632|ref|ZP_06192897.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041315|gb|EFA14414.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 179

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +YGI  L++    N       ++AE   +S  FL KI   L KAGIV    G R
Sbjct: 3   YITTSVEYGIHCLLWLVGDNQRALSSRELAELQGVSPSFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPAD+I+ L+++ A E    + +C         F +   D  + G C + +V+ 
Sbjct: 63  GGYRLARPADEISFLEIIDAIEGHKPLFDCQEVRGRCAVFDNSPPDWAVSGKCAIHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L   ++
Sbjct: 123 QAEKAMRDALAAQTL 137


>gi|302522427|ref|ZP_07274769.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. SPB78]
 gi|302431322|gb|EFL03138.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. SPB78]
          Length = 151

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A  ++  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGRLAYPGP-AAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   + +
Sbjct: 120 LLGEVSLASLAREAPTTR 137


>gi|182677317|ref|YP_001831463.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633200|gb|ACB93974.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 180

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++     D    I ++AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HLTISVEYGIHCLLWLVGSGDTAMSIRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL R  ++I+ LD+V A E    + +C         FA    +  + G C +  V+ 
Sbjct: 63  GGYRLGRSPEEISFLDIVDAIEGHKPLFDCQEVRERCALFAGKPPEWAMKGVCAIHGVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L   ++
Sbjct: 123 QAEKAMRDSLASQTL 137


>gi|118590662|ref|ZP_01548063.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
 gi|118436638|gb|EAV43278.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
          Length = 143

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+LM     +D P  + ++++   +++  + KI+  L K G +ET RGR
Sbjct: 1   MRLSQASDFALRILMATG-QSDDPQTVDKLSKQLGLAKSHVMKIVAHLAKGGYLETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +    I + DVV+  E    V  C       C  +  C L   + +A  AF  
Sbjct: 60  GGGIRLAKAPATIRLGDVVRLIEPDLGVVACLKPEPTVCAFLPRCALKGAMAQASEAFLA 119

Query: 121 VLTQYSIECLV 131
            L   ++  ++
Sbjct: 120 SLNTETLASIL 130


>gi|15838078|ref|NP_298766.1| hypothetical protein XF1477 [Xylella fastidiosa 9a5c]
 gi|9106501|gb|AAF84286.1|AE003977_9 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 153

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+VE  RG 
Sbjct: 2   LRVTKLTDYASVVLTVLAAHPGAVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
            GG RL  P  +IT++ +V+A E    + EC   H   C +   CG+ S
Sbjct: 62  YGGYRLAHPPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109


>gi|315651843|ref|ZP_07904846.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium saburreum DSM 3986]
 gi|315485845|gb|EFU76224.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium saburreum DSM 3986]
          Length = 146

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 82/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  Y +++++  AI+ + P +I+Q++++  ISE +L +I+  L KA +V+++RG 
Sbjct: 1   MKISTRGRYALKMMVEFAINMETPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +P ++ T+ ++++ TE S    +C   +  +C     C   ++ +K  +A  +
Sbjct: 61  QGGYLLVKPVEEYTVGEILRLTEGSLAPVDCLDGNG-NCVHSDFCVTQNLFKKVEDAINN 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           V+   S++ LV +   I++
Sbjct: 120 VVDNISLKDLVTDELDIRR 138


>gi|312880924|ref|ZP_07740724.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784215|gb|EFQ24613.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 164

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    + P RI  +AEA  I   FL  IL  L   G VE+ RG
Sbjct: 1   MAITQKCQYALRALFELACREGEGPVRIGTVAEAQNIPPRFLEGILNTLKAGGFVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL RPA  I++ DV++  + S    +C   S +  C L G C    +  +A  A 
Sbjct: 61  KEGGYRLLRPARDISVGDVIRYLQGSLSQVDCDPGSSREPCGLYGDCVFRPLWERAQKAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V    +I+  V  ++  ++
Sbjct: 121 ESVYDSTTIQDFVDRQAERER 141


>gi|318059253|ref|ZP_07977976.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           sp. SA3_actG]
 gi|318075281|ref|ZP_07982613.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           sp. SA3_actF]
          Length = 151

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A   +  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYPGP-AAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   +++
Sbjct: 120 LLGEVSLASLAREAPTMR 137


>gi|172057245|ref|YP_001813705.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989766|gb|ACB60688.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 131

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57
           M +T+ TDY IRVL+Y  ++   PNR+ QI E      IS+  L KI+  L K G++ + 
Sbjct: 1   MKMTRSTDYAIRVLLYATLN---PNRLVQIQEVADHYAISKNHLMKIVHALSKFGLITSY 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +GR GG +L +  ++IT+  VV   EE  ++ E   +++ +              +A   
Sbjct: 58  QGRNGGFKLAKAPNEITLGQVVALFEEVSYLKEVLPTNEKET----LKNTRQAFDEAFLL 113

Query: 118 FFDVLTQYSIECLVR 132
           F + L  Y++E L +
Sbjct: 114 FANALQAYTLEDLTK 128


>gi|256830950|ref|YP_003159678.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580126|gb|ACU91262.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 153

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ Y  R+L+  A+HN+  P+R++ I+E   I+  F+ +I++PL  AG+V + RG
Sbjct: 1   MKLSAKSRYASRILLDLALHNEGVPHRVNDISERTGITVPFIEQIIKPLKHAGMVTSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + IT+ D+V+  E S  ++ C ++ ++ C     C   +  ++A +A  
Sbjct: 61  AAGGHQLGRSPENITLGDIVRIMEGSVELSACLSAPEL-CERTAVCPTRAAWQRATDAML 119

Query: 120 DVLTQYSIECLV 131
             L   ++  L 
Sbjct: 120 RELDTITLAGLA 131


>gi|262393041|ref|YP_003284895.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
 gi|269967699|ref|ZP_06181748.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
 gi|262336635|gb|ACY50430.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
 gi|269827677|gb|EEZ81962.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
          Length = 141

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIFLASLPEDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    V  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVDF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +IE L+ + S +
Sbjct: 117 AELDDCTIESLLSDNSEL 134


>gi|303245724|ref|ZP_07332007.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302492987|gb|EFL52852.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 147

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+H  D P RI  +A    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALHAVDGPVRIKDVAARQGVSIKYLEKLVRELKQAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
            RGG  L +P  +IT+  +V+A E    + EC        CP +  C    V  +A  A 
Sbjct: 61  PRGGHELAKPLSEITVGAIVRALEGDISLVECDGEGSGQSCPRLADCLTREVWAEAARAM 120

Query: 119 FDVLTQYSIECLV 131
            + L   ++  LV
Sbjct: 121 HERLDAITLADLV 133


>gi|83590489|ref|YP_430498.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573403|gb|ABC19955.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica
           ATCC 39073]
          Length = 150

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R +YG+R +   A H  + P  I  +AE   ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTRGEYGLRAMFDLAQHYGEGPIPIKSVAERQDISEHYLEQLIAVLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R  ++IT+ D+++  E      EC  + + + C    +C    +  K  ++ 
Sbjct: 61  AQGGYVLSREPEEITVGDIIRVLEGPIAPVECLNTAEGESCERAETCVTRGIWEKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            DVL  +++  +V   + +++
Sbjct: 121 SDVLDSFTLADMVAKANQMRQ 141


>gi|189424306|ref|YP_001951483.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter lovleyi SZ]
 gi|189420565|gb|ACD94963.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
          Length = 134

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT++ DY IR ++Y A  +  PN+IS   +IA A  + + FL KI Q   K GIV++ 
Sbjct: 2   MELTRKGDYAIRGIIYLA--SQPPNKISLLSEIAVAVDVPQTFLAKIFQQFSKTGIVKSF 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L  P + IT+L VV+A E       C      +C    SC +  V R+    
Sbjct: 60  RGTGGGFLLAGPPESITLLQVVEAVEGPILPNRCVLKPG-ECERDASCTVHPVWRQVQQQ 118

Query: 118 FFDVLTQYSIECL 130
              +L   +++ L
Sbjct: 119 VRSILAGITLKDL 131


>gi|91227445|ref|ZP_01261809.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
 gi|91188595|gb|EAS74886.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
          Length = 141

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIFLASLPEDELTSITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    V  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLEPLDLV-NCGVDF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +IE L+ + S +
Sbjct: 117 AELDDCTIESLLSDNSEL 134


>gi|118581140|ref|YP_902390.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus
           DSM 2379]
 gi|118503850|gb|ABL00333.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus
           DSM 2379]
          Length = 158

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ YG+R L   A +    P +I  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MRLTTKSRYGLRALFDIAYNCGTAPAQIQDISRRQDISPRYLEQIFQNLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRK 113
            +GG  L R  D+ITIL+++ ATE+   + EC  + +       +C   GSC   +V  +
Sbjct: 61  PQGGYFLARSPDKITILEILNATEQDVLLVECAGATEKKSKRTGECAQEGSCVTQTVWEE 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A     ++ +  +++ L
Sbjct: 121 ASALLGELFSGITLQTL 137


>gi|295695737|ref|YP_003588975.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
 gi|295411339|gb|ADG05831.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
          Length = 136

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YGI +++  AI++ D P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKLSTRGRYGITLMVDLAINSGDQPVSLKSIAERQNLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +PA +IT  D+V+  E    V E       D P  G   L   +R A+NA  
Sbjct: 61  AYGGYVLAKPAQEITAGDIVRVLEGPITVVE-------DEP-TGLRRLWDEVRDAINAVL 112

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D  T   +  ++R  +    +F
Sbjct: 113 DRTTLADLAEMMRQGTDDGLMF 134


>gi|307941725|ref|ZP_07657080.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
 gi|307775333|gb|EFO34539.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
          Length = 138

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+L+Y       P  + ++     +S+  L K++  L +  +VET RGR
Sbjct: 1   MRLSQASDFALRILIYLG-QTREPQTVDKLTSRLRLSKSHLMKLVAQLARLDLVETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L    + I I DVV++ E    V  C      +C  +  C L   +  A +AF D
Sbjct: 60  GGGILLKANPETIRIGDVVRSFETDLGVVACLKQEPTECVFLPRCALKQTMAGAADAFLD 119

Query: 121 VLTQYSI 127
            L Q ++
Sbjct: 120 YLNQKTL 126


>gi|158522270|ref|YP_001530140.1| BadM/Rrf2 family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158511096|gb|ABW68063.1| transcriptional regulator, BadM/Rrf2 family [Desulfococcus
           oleovorans Hxd3]
          Length = 154

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ YG R+++  A++  + P R+S++++   IS  +L K+++ + +AG+VE+ RG
Sbjct: 1   MRLTTKSRYGTRLILDLALYGKEEPVRLSEVSKRQGISLKYLEKLIRRMRRAGLVESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
             GG +L +  + I++ D+V+  E    + +C     +   C   G C    +  +   A
Sbjct: 61  PYGGYKLAKAPEDISVGDIVRVMEGGTSITDCSERESVCGVCNRAGECLSRHIWVETSKA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
            F+ L ++ I  L+ N ++I K
Sbjct: 121 MFNALDEFRIGDLIENSTTILK 142


>gi|114798504|ref|YP_760252.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738678|gb|ABI76803.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 136

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 69/127 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   D     +++AE   +S   L KI+Q L  AG+++T RG 
Sbjct: 1   MRLTAFTDYGLRMLMRMASAPDRAFSTAELAEEFGLSRNHLAKIMQRLAGAGLIQTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I +  +++  EE   + EC ++    C L   C L + L+ A  AF  
Sbjct: 61  GGGAELGRPANEIRLGAIIRLLEEGQPLVECLSADGGACTLTPRCRLKARLQSAEMAFLS 120

Query: 121 VLTQYSI 127
            L Q ++
Sbjct: 121 ELDQSTL 127


>gi|125974348|ref|YP_001038258.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256005573|ref|ZP_05430533.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281418895|ref|ZP_06249913.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|125714573|gb|ABN53065.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|255990481|gb|EEU00603.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281407352|gb|EFB37612.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|316941506|gb|ADU75540.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 153

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  ++  AIH+    R+S   IAE C +SE ++ +I   L +AGIVE++R
Sbjct: 1   MKISTKGRYGLEAIVDLAIHSS-EGRVSLKSIAERCGMSEAYILQIFLILRRAGIVESIR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKA 114
           G +GG  L R   QIT+ +++   E       C A      K  C    +C   S   K 
Sbjct: 60  GAQGGYVLARDPSQITVGEILTVLEGPLAPVPCIAEKTKRSKSSCERYENCTARSFWEKI 119

Query: 115 LNAFFDVLTQYSIECLVR 132
           +N   DV    ++E LV+
Sbjct: 120 MNTLNDVANSITVEDLVK 137


>gi|238757525|ref|ZP_04618710.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
           35236]
 gi|238704287|gb|EEP96819.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
           35236]
          Length = 125

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           ISQ+ +   +S   + KI+  L + G+V  VRG+ GG+RL +PA QI I DVV+  E   
Sbjct: 12  ISQVTDVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPAAQIRIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L  VL +A+ +F + L  Y++  +V++ S + K+ 
Sbjct: 72  LV-NCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVKDNSPLYKLL 122


>gi|222529700|ref|YP_002573582.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312622077|ref|YP_004023690.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222456547|gb|ACM60809.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312202544|gb|ADQ45871.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 150

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+R +   A+H D     +  IAE   ISE +L +++  L KAG+V+++RG +
Sbjct: 4   LSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGAQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A   
Sbjct: 64  GGYMLSRDPSKITIGEILRALEGSLSPSECIDDLDRVDCPRAEFCVTRKVWEKVKEAIEK 123

Query: 121 VLTQYSIECLVRN 133
           V+   +++ LV +
Sbjct: 124 VVDSVTLQDLVDD 136


>gi|187736491|ref|YP_001878603.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426543|gb|ACD05822.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 147

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A H D     + +I+    ++  +L +I+  L+KAG V++ RG
Sbjct: 2   MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + T  D++K TE S     C ASH+  CP    C      R       
Sbjct: 62  KAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIE 121

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
           + L + ++E L   +  I   + AG
Sbjct: 122 NYLRRVTLEDLAEQQKEIGCDYGAG 146


>gi|302391513|ref|YP_003827333.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
 gi|302203590|gb|ADL12268.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
           arabaticum DSM 5501]
          Length = 153

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG+R ++  A+H D      ++ IAE   ISE +L +++  L KAG+V +VR
Sbjct: 1   MKLSTKGRYGVRAMVDLALHYDDQGATPLNSIAERQNISEHYLEQLIATLRKAGLVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117
           G  GG  L R   +IT+ D+++  E     +EC A   +  C  + SC    + +K  N+
Sbjct: 61  GAYGGYLLARKPAEITVKDIIQELEGPIAPSECVAKESESSCENIESCITRLIWKKLRNS 120

Query: 118 FFDVLTQYSIECL 130
             +VL   ++E L
Sbjct: 121 INEVLNSITLEDL 133


>gi|237728822|ref|ZP_04559303.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909444|gb|EEH95362.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 167

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  LM C + +    R   + +IAE   +   +L KI   L KAG+V ++ G+ GG 
Sbjct: 9   EYGIHSLM-CMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115
           +L +PA+ IT+LDVV A +    + EC         F  H  +    G CG+ SV+  A 
Sbjct: 68  QLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFEEHPPEWACEGICGVRSVMDMAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L Q++I  L R 
Sbjct: 128 QRMEEALGQHTILDLARK 145


>gi|167627991|ref|YP_001678491.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597992|gb|ABZ87990.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 136

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A +N  P   ++IAE   ++   + K+L  L  + IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L      IT+LDVVKA E+   + EC   HK  C L GSC ++S  +   +   D
Sbjct: 62  EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSSYWKVLNSQLLD 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|241668545|ref|ZP_04756123.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877080|ref|ZP_05249790.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843101|gb|EET21515.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 136

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A +N  P   ++IAE   ++   + K+L  L  + IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L      IT+LDVVKA E+   + EC   HK  C L GSC +++  R   +   D
Sbjct: 62  EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSNYWRVLNSQLLD 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|291531113|emb|CBK96698.1| rrf2 family protein (putative transcriptional regulator)
          [Eubacterium siraeum 70/3]
          Length = 135

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T  TDY IR++ + A  ND       I+E   + + F  KIL+ L  AGIV + +G 
Sbjct: 1  MHITLETDYAIRIVDFMA-KNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
          +GG  L R   ++++ DVV+A E+++  + C   H
Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEDTYMFSRCLDGH 94


>gi|333023880|ref|ZP_08451944.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332743732|gb|EGJ74173.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 151

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L   A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALAELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A   +  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYPGP-AAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   + +
Sbjct: 120 LLGEVSLAALAREAPTTR 137


>gi|298243979|ref|ZP_06967786.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297557033|gb|EFH90897.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 145

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT + DYG+R ++   A +   P   S IA    I E +L +IL  L K G+V++VRG
Sbjct: 1   MKLTMKGDYGLRAMLDMAAYYGQGPIESSDIASRQYIPEQYLDQILMVLRKEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   QIT+  V++A E      EC  +    C L   C L  V +K   A  
Sbjct: 61  PKGGHMLAKAPGQITMAQVMQALEGYVPPMECLPNPDF-CKLSPGCALREVWQKIDAATQ 119

Query: 120 DVLTQYSIECLV-RNRSS 136
           ++L   +IE L  R+R+ 
Sbjct: 120 EILNSTTIEELAQRHRTG 137


>gi|118472493|ref|YP_885725.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173780|gb|ABK74676.1| transcriptional regulator, BadM/Rrf2 family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 153

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           MHLT+ TD G+R LM  +       R++   IA++   SE  + K +  LV+ G+V   R
Sbjct: 1   MHLTRFTDLGLRTLMLLSAGESQDQRVTTRTIAKSANASEHHVAKAVSKLVEMGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC  +    CPL+ +C L   L +A  AF
Sbjct: 61  GRVGGLELTEAGRTASIGRLVRELEGDREVIECGGA--APCPLIAACRLRRALAEAKEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L +Y++  L 
Sbjct: 119 YRELDRYTVTDLT 131


>gi|260588146|ref|ZP_05854059.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
           hansenii DSM 20583]
 gi|331082288|ref|ZP_08331414.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541673|gb|EEX22242.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
           hansenii DSM 20583]
 gi|330400774|gb|EGG80375.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 150

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A+++D     I  I+    IS+ +L ++++ L KAG+V + RG
Sbjct: 1   MKLSTKGRYGLRALIDLALYSDEEAVSIQSISNRQNISDSYLEQLMRKLKKAGLVVSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            +GG RL +PAD+I++ DV++A E S     C A +   C 
Sbjct: 61  AQGGYRLAKPADEISVGDVLRALEGSLEAVSCGAGNNEHCQ 101


>gi|169630216|ref|YP_001703865.1| hypothetical protein MAB_3134c [Mycobacterium abscessus ATCC 19977]
 gi|169242183|emb|CAM63211.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 137

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT+ TD G+R++M  A+    PN       +A   C+S     K++  L + G +E+ 
Sbjct: 1   MQLTRFTDLGLRIVMRLAVEG--PNAQLHTDDLAAQLCVSYTHATKVVARLSEMGAIEST 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GGVR+ +      +  + +  E S  V +C       CPL  +C L   LR A +A
Sbjct: 59  RGRHGGVRITQDGLGRRVGSLARKLERSGEVIDCEGDPP--CPLRRNCRLREALRSAQDA 116

Query: 118 FFDVLTQYSIECLVR 132
           FF  L Q+++  + R
Sbjct: 117 FFTHLDQWTVAEIAR 131


>gi|297566014|ref|YP_003684986.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
           DSM 9946]
 gi|296850463|gb|ADH63478.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
           DSM 9946]
          Length = 151

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ ++ YG+R L+   +       +  +AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKSQYGLRALVEIGLRAPEAVPLKDVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L +P +++T L+VV+A E S     C    +  C   G C   ++ ++   A   
Sbjct: 61  KGGYKLGKPPEKLTALEVVEALEGSLAPVTCLDDPE-SCYHTGHCSTEALWKRVDLAMRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   S++ L+  R  I+
Sbjct: 120 VLGSTSLKDLIEQRRIIE 137


>gi|218289783|ref|ZP_03493983.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258510985|ref|YP_003184419.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218240074|gb|EED07259.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257477711|gb|ACV58030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 144

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ RT+YG+R ++  A    ++ P  +  IAEA  I E FL +I+  L +A +V +VR
Sbjct: 1   MKISSRTEYGLRAMVALARMAGHERPVPLRAIAEAEAIPEPFLDQIMAKLRRANLVTSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKAL 115
           G  GG  L RPA++I++ ++V+  E S     C      D   C L   C   SV  +  
Sbjct: 61  GVNGGYHLSRPAEEISVGELVRVLEGSLAPIACVDDADPDSASCDLYAGCHARSVWVRVT 120

Query: 116 NAFFDVLTQYSI 127
            A    L Q S+
Sbjct: 121 KAIARALDQLSL 132


>gi|23097775|ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22775999|dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 141

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS----QIAEACCISELFLFKILQPLVKAGIVET 56
          M  +K T+Y +  ++Y A   D P   S    ++AE   +S  +L KIL  LVK+G++E+
Sbjct: 1  MKFSKATNYALHTMVYLA---DIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIES 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            G +GG RL R AD IT LDV++A E    +  C   H  D
Sbjct: 58 TPGAKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDD 99


>gi|71274966|ref|ZP_00651254.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
 gi|71901204|ref|ZP_00683307.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|170730004|ref|YP_001775437.1| hypothetical protein Xfasm12_0819 [Xylella fastidiosa M12]
 gi|71164698|gb|EAO14412.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
 gi|71729048|gb|EAO31176.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|167964797|gb|ACA11807.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 153

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+VE  RG 
Sbjct: 2   LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
            GG RL R   +IT++ +V+A E    + EC   H   C +   CG+ S
Sbjct: 62  YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109


>gi|237808576|ref|YP_002893016.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237500837|gb|ACQ93430.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 154

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R LM+ A +     + + +I+    IS   + K++  LV  G + +VRG
Sbjct: 1   MKLTTYTDYGLRTLMFMACLSPGARSSVVEISNYYDISRNHMVKVVVQLVSLGYLSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L R    I I  V++  E +    +C +     C LV  C LT+ L+  + AF 
Sbjct: 61  KNGGITLARLPRDIRIGQVIRDLESNLNGVDCGSPG---CKLVPVCRLTNALKVGMEAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             + ++++  LV N   I  I 
Sbjct: 118 AAMDEFTLSDLVNNADQIIAIL 139


>gi|222054501|ref|YP_002536863.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221563790|gb|ACM19762.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 154

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 6/129 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A ++ + P +I  I+    IS  +L +I Q L K GI+ + RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQNISPRYLEQIFQALKKKGILNSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKA--- 114
            +GG  L R  D+IT+ D+V+ATE    + +C     +K  C   G C   +V  +A   
Sbjct: 61  PQGGYCLARNPDEITVRDIVQATEGDTLLVDCSGGKKNKQHCGFDGGCVTQTVWDEASRE 120

Query: 115 LNAFFDVLT 123
           LN  F  +T
Sbjct: 121 LNRLFGSIT 129


>gi|148265924|ref|YP_001232630.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146399424|gb|ABQ28057.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 154

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 6/129 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A ++ + P +I  I+    IS  +L +I Q L + GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQEISPRYLEQIFQSLKRKGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKA--- 114
            +GG  L +  ++IT+ D+++ATE    + +C  S K   +C   GSC   +V  +A   
Sbjct: 61  PQGGYCLAKNPEEITVKDIIQATEGDTMLVDCAGSKKKKGECAFDGSCVTQTVWEEANAK 120

Query: 115 LNAFFDVLT 123
           LN  F  +T
Sbjct: 121 LNELFASIT 129


>gi|225412244|ref|ZP_03761433.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
           DSM 15981]
 gi|225042209|gb|EEG52455.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DYG+R++   A+ +     I QI E  CI + F +KIL+ L  AG+V+  RG 
Sbjct: 24  MMITRESDYGVRIIR--ALKDGGLMTIGQICERECIPKQFAYKILKKLELAGLVQIKRGF 81

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            GG  L R    +T+ DV++AT+E FF+  C  +   DC 
Sbjct: 82  GGGCALARDLADMTLYDVIRATDEEFFLTHCLQAD-FDCE 120


>gi|85704175|ref|ZP_01035278.1| Rrf2 family protein [Roseovarius sp. 217]
 gi|85671495|gb|EAQ26353.1| Rrf2 family protein [Roseovarius sp. 217]
          Length = 140

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 68/127 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   D     +++A    +S   L KI+Q L +AG+++T RG 
Sbjct: 1   MRLTSFTDFGLRMLMRMASAPDRAFSSAELATEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  QI + DV++  E    +  CF     DC L G C L + LR A  AF D
Sbjct: 61  GGGALLARPPAQIRLGDVIRHLESGQALVACFGPEAGDCSLDGRCRLKARLRSAERAFLD 120

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 121 DLDRSTL 127


>gi|54025656|ref|YP_119898.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54017164|dbj|BAD58534.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 152

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L++ TD G+R +M  A+      R++   +A     SE ++ K +  L + G+V++ R
Sbjct: 1   MQLSRFTDLGLRAMMRLAVGGAAEERVTVRLVARQVNASEHYVAKAVTKLAELGLVDSHR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       T+  +V+  E +  V +C   H   CPL  +C L  +L  A   F
Sbjct: 61  GRTGGIFLTDRGRAATVGQIVRGLEGAAEVVDCAGEHP--CPLAAACRLRRMLADAQEMF 118

Query: 119 FDVLTQYSIECLVRNRS 135
           +  L +Y++  LV  R+
Sbjct: 119 YRELDKYTLRDLVDERT 135


>gi|226313931|ref|YP_002773827.1| hypothetical protein BBR47_43460 [Brevibacillus brevis NBRC 100599]
 gi|226096881|dbj|BAH45323.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 132

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  ++Y  A   D P  +  +AE   +S+ +L K+L  LVKAG++ +V G
Sbjct: 1   MKYSQATDYALHAMLYLVAEAPDKPVSVQLLAEKLGVSQTYLSKMLTKLVKAGLIHSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG +L R  D I+ LDV++A E +  + EC   H   C
Sbjct: 61  ANGGYKLKRNQDDISFLDVIQAIEGTTSLFECSFRHDSAC 100


>gi|46578944|ref|YP_009752.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603455|ref|YP_967855.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|464693|sp|P33395|RRF2_DESVH RecName: Full=Protein rrf2
 gi|290384|gb|AAA72001.1| rrf2 [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448357|gb|AAS95011.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563684|gb|ABM29428.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311232802|gb|ADP85656.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 150

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A+H ++ P  I  IA+   IS  +L K+++ L KAG + +  G
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHGSEQPVSIKDIAQRQGISVKYLEKLIRVLRKAGYITSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L   A+ I + DVV A EE     EC   +   CP +  C   ++  +A  A +
Sbjct: 61  AHGGYQLAHKAEDIPVGDVVYALEEMEAPVECDEENPC-CPRMAVCLTRTIWGEAAKAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L  +++  L+R+ S
Sbjct: 120 RKLNTFTLADLMRDAS 135


>gi|193213019|ref|YP_001998972.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
           NCIB 8327]
 gi|193086496|gb|ACF11772.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
           NCIB 8327]
          Length = 141

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  + Y A+   + P  + ++A     S++FL K +Q L KAGI  +V+G
Sbjct: 2   LQVSRKFEYGLHAVSYLAMKGPERPVTVKELASEIGFSQVFLAKAMQSLNKAGITRSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA+QIT+ D+  A E    +  C +    DC +  +C   + +        
Sbjct: 62  VKGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCDCEIESTCSHKAYMFNLQKRIQ 120

Query: 120 DVLTQYSIECLVRN 133
            +L + ++  L+ N
Sbjct: 121 QLLAETTVASLLHN 134


>gi|6136580|sp|Q55433|Y846_SYNY3 RecName: Full=Putative HTH-type transcriptional regulator slr0846
          Length = 147

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y ++ L+  A+  DY P  +  IAE   I   +L K+L  L +AGIV   RG
Sbjct: 1   MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +  DQI++  ++ A EES    E F  +  D  L       SV R+    F 
Sbjct: 61  VRGGYQLAQAPDQISLGQILAALEESL---EPFPQYGDDQSLAEDWVTLSVWRQLHQKFV 117

Query: 120 DVLTQYSI 127
             L  YSI
Sbjct: 118 KAL--YSI 123


>gi|291287793|ref|YP_003504609.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884953|gb|ADD68653.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 134

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T+ +DY IR L++ A H         S++A  C I + FL KILQ L K+ I+ + R
Sbjct: 1   MKVTRASDYAIRALIHMA-HKPLGTTFMRSELAAECEIPDSFLGKILQNLAKSEILSSER 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G++GG ++ +   +IT+ D++ A E    + +C       C LV SC   ++     +  
Sbjct: 60  GKKGGFKVAKNPAEITVYDIISAIEGDIALNKCIFDEDF-CSLVHSCTAHNMWSDIQDNL 118

Query: 119 FDVLTQYSIECLVR 132
            ++L  YS+  L  
Sbjct: 119 VEMLKSYSLAKLTE 132


>gi|16331737|ref|NP_442465.1| hypothetical protein slr0846 [Synechocystis sp. PCC 6803]
 gi|7429419|pir||S75800 hypothetical protein slr0846 - Synechocystis sp. (strain PCC 6803)
 gi|1673323|dbj|BAA10535.1| slr0846 [Synechocystis sp. PCC 6803]
          Length = 157

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y ++ L+  A+  DY P  +  IAE   I   +L K+L  L +AGIV   RG
Sbjct: 11  MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +  DQI++  ++ A EES    E F  +  D  L       SV R+    F 
Sbjct: 71  VRGGYQLAQAPDQISLGQILAALEESL---EPFPQYGDDQSLAEDWVTLSVWRQLHQKFV 127

Query: 120 DVLTQYSI 127
             L  YSI
Sbjct: 128 KAL--YSI 133


>gi|303241873|ref|ZP_07328367.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302590547|gb|EFL60301.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 149

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+HN + P  +  IAE   ISE +L ++   L KAG V++VRG
Sbjct: 1   MKLSTKGRYGVKSMLDLALHNGEGPVALKSIAERQDISENYLEQLFATLRKAGHVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCG---LTSVLRKAL 115
            +GG  L    + ITI  +++A E S    EC      I C     C    +   +R  +
Sbjct: 61  SQGGYILANSPENITIGAILRALEGSLAPVECVVEDDPIKCTKSDQCVTRIIWEKIRDKV 120

Query: 116 NAFFDVLTQYS-IECLVRNRSSIKKIFN 142
           N   D +T Y  IE   +N  S   IFN
Sbjct: 121 NEVVDSITLYDLIEEYTKNNESKGYIFN 148


>gi|194364780|ref|YP_002027390.1| transcriptional regulator TrmB [Stenotrophomonas maltophilia
           R551-3]
 gi|194347584|gb|ACF50707.1| transcriptional regulator, TrmB [Stenotrophomonas maltophilia
           R551-3]
          Length = 151

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG 
Sbjct: 2   LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           RGG RL R A +I++ +VV+A E    + EC   H   C +   CG  S  R
Sbjct: 62  RGGYRLTRAAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWR 112


>gi|225849877|ref|YP_002730111.1| Rrf2 family protein [Persephonella marina EX-H1]
 gi|225646286|gb|ACO04472.1| Rrf2 family protein [Persephonella marina EX-H1]
          Length = 142

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          IR ++Y A + D  + +S  +IAE   +S  FL K LQ LVK G++E+ RG  GGVRL +
Sbjct: 10 IRAMIYIAKYGDRNSFLSIHKIAEDLDLSFYFLSKNLQKLVKVGLLESYRGPNGGVRLAK 69

Query: 69 PADQITILDVVKATEESFFVAEC 91
          P DQI +LD++ A + + F  +C
Sbjct: 70 PPDQIKLLDIIDAIDGTEFFNKC 92


>gi|157828690|ref|YP_001494932.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933410|ref|YP_001650199.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|157801171|gb|ABV76424.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908497|gb|ABY72793.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
          Length = 142

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  TDYG+R L+Y A     P RI    +I+E   IS   L K++  L + G + + 
Sbjct: 1   MQLTSFTDYGLRSLIYLA---STPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSS 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G+ G ++L      + + D+++  E +  + ECF  +   C +  S      +++A  A
Sbjct: 58  KGKGGRIKLAFSPSSMNLGDIIEKFEPNMDIVECFNKNTNSCRITNSYQFKHFIKEASEA 117

Query: 118 FFDVLTQYSIE 128
           F   L  Y++E
Sbjct: 118 FIKTLNNYTLE 128


>gi|268609758|ref|ZP_06143485.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 145

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H D     + +IAE   IS+ +L +I+  L K+ ++ T RG
Sbjct: 1   MKISTKGRYALRMLFDLASHYDEGFISLKEIAERQNISKKYLEQIVPLLNKSNLLRTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R A++IT+ DV++ATE S     C      +CP  G C    V     ++  
Sbjct: 61  NKGGYMLARKANEITVADVLEATEGSLAPVACLEFEPNECPRAGECSTLFVWEGLYSSIK 120

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ ++ + S +
Sbjct: 121 KYLSSISLQDIIDHSSDL 138


>gi|149176060|ref|ZP_01854677.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
 gi|148845214|gb|EDL59560.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
          Length = 139

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A  +D    ++ +AE   IS   + K++  L + G + +VRG 
Sbjct: 1   MQLTMQTDYALRTLMYLASQDDRAT-VANVAELFQISSHHVAKVVNQLSRLGYIRSVRGM 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L  P ++I + DV++  E +  + EC  +  + C +   C L  VL +A     +
Sbjct: 60  GGGIELAVPLEKIRLGDVIERFEGNLHLLECVGTENV-CIIQPFCKLKGVLAEAERVQLE 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L   ++  +  +   +K I
Sbjct: 119 YLNSVTLADVAPSHRQLKSI 138


>gi|148556886|ref|YP_001264468.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502076|gb|ABQ70330.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 137

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++RT Y IR L++ A H+ + P ++++IAE   I   FL  IL  + +AG VET+RG+ 
Sbjct: 2   LSQRTRYAIRALLHLADHHGEGPIQLAEIAERQNIPAKFLTVILSEMKRAGFVETMRGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVLRKA 114
           GG  L R   +IT  D+V+AT  S  +  C A        H ID      C L  V+   
Sbjct: 62  GGYWLSRAPTEITYGDIVRATRGSLALVPCAARLAYTPCDHCID---ETECRLRGVMLSV 118

Query: 115 LNAFFDVLTQYSI 127
            +    +L Q S+
Sbjct: 119 RDETAKILDQLSL 131


>gi|160941172|ref|ZP_02088509.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435733|gb|EDP13500.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
           BAA-613]
          Length = 131

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 18  AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           AIH D  P +I  IA    IS  +L +I+  L +AG V ++RG +GG  L RP+   T+ 
Sbjct: 5   AIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGFVRSIRGNQGGYYLARPSSDYTVG 64

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
            +++ TE S    +C +  K  C     C    + R+   A   V+ +Y++E LV+ + S
Sbjct: 65  SILRITEGSLAPVDCLSGDKNPCTRQMDCVTLRLWRELDEAISGVVDKYTLEDLVQWQKS 124

Query: 137 IKKIF 141
           +K  +
Sbjct: 125 MKDNY 129


>gi|299822759|ref|ZP_07054645.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816288|gb|EFI83526.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 150

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M  +K T+Y +  ++Y A H    N   + ++AE   +S  +L K+L  LVKAG++E+V 
Sbjct: 8  MKYSKATNYALHTMVYLA-HTTLENTLGVKELAERFQVSSTYLSKVLTTLVKAGLIESVS 66

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G +GG +L R ++ IT LDVV+A E
Sbjct: 67 GVKGGYKLARSSETITFLDVVQAVE 91


>gi|225174416|ref|ZP_03728415.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225170201|gb|EEG78996.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 140

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R +   A+     P  + +IA+   IS  FL +I  PL +AG++++VRG
Sbjct: 1   MKVSAKGEYGVRAMAILALEFRAGPIPLREIAKREGISYQFLEQIFLPLRRAGLIDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L RP D+I + D+++A E      EC      D C    +C    +  K  +  
Sbjct: 61  AKGGYVLARPPDEIKVGDILRALEGPIAPVECVGEGNTDACGRSAACLTRGIWEKLRDTM 120

Query: 119 FDVLTQYSIECLVR 132
            +VL   ++  +++
Sbjct: 121 SEVLNDITLADVIK 134


>gi|39996739|ref|NP_952690.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39983620|gb|AAR35013.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
          Length = 136

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A I       IS+IAEA  + + FL KILQ   K GIV++ RG
Sbjct: 1   MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +IT+ +VV+A E       C       C     CG+  V RK      
Sbjct: 61  AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 119

Query: 120 DVLTQYSIECL 130
           + L   ++E L
Sbjct: 120 ETLDAVTLEEL 130


>gi|298505751|gb|ADI84474.1| transcriptional regulator, putative [Geobacter sulfurreducens
           KN400]
          Length = 137

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A I       IS+IAEA  + + FL KILQ   K GIV++ RG
Sbjct: 2   MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +IT+ +VV+A E       C       C     CG+  V RK      
Sbjct: 62  AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 120

Query: 120 DVLTQYSIECL 130
           + L   ++E L
Sbjct: 121 ETLDAVTLEEL 131


>gi|226361387|ref|YP_002779165.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239872|dbj|BAH50220.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 157

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A+  D     S+ IAE   +S     K++  L + GIV+  RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYTHAAKVITRLGELGIVDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       ++  + +  E    V +C  +    CPL  +C L S LR+A +AFF
Sbjct: 61  RAGGLAITELGRTASVGWLARRLEGDAEVVDCDGAQP--CPLRSNCLLRSALRRAQDAFF 118

Query: 120 DVLTQYSIECLVRN 133
             L   ++E L R 
Sbjct: 119 TSLDALTVEDLTRT 132


>gi|283850155|ref|ZP_06367444.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283574181|gb|EFC22152.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 145

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+  +Y IR +++ ++H D P   R  +IAEA  I   FL K+ Q L +AGI+   +
Sbjct: 1   MRLTRAGEYAIRCVLHLSMHRDRPVITR-KEIAEAMDIPAQFLGKVAQHLARAGIIAIRQ 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R  + IT+L +V+A +   F+ +C  S    C     C +  V  KA +  
Sbjct: 60  GAQGGYELVRRPEDITLLSLVEAIDGEIFLNDCI-SRPESCDRRKLCSVHRVWDKARSQL 118

Query: 119 FDVLTQYSIECLVRNRS 135
            + L   ++  L    S
Sbjct: 119 RETLGSTTLAALAETES 135


>gi|298530274|ref|ZP_07017676.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509648|gb|EFI33552.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 143

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS---QIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT+  +Y +R ++Y A     P +++   ++A+A  I E F+ K+ Q L +AGI++  
Sbjct: 1   MMLTRGGEYAVRCVLYLAACTT-PGQVAPKKEVAQAMQIPESFMAKVAQTLSRAGIIQIT 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G RGG RL +   ++++L VV+A +   F+ +C  S +  C    SCG+  V   A   
Sbjct: 60  QGARGGYRLLKDPSRLSLLQVVEAVDGEIFLNQCIMSPE-SCRRSPSCGVHRVWETARQR 118

Query: 118 FFDVLTQYSIECLVRN 133
               L +     L R 
Sbjct: 119 LRQTLDETDFATLARE 134


>gi|108803666|ref|YP_643603.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764909|gb|ABG03791.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 150

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK++ Y +R L+   +     P  +S+IA    I E FL +I   L +AGI+E+ RG
Sbjct: 1   MRLTKKSKYAVRALVEVVLRGSGGPVGVSEIARRQRIPERFLEQIFGELRRAGILESHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116
             GG     P +++T+LD+V+  +     A C A    +  D PL   C  + V  +A  
Sbjct: 61  AHGGYSFSMPPEEVTVLDIVEVLDGEIRPARCSAGGVCYIDDAPL---CSTSRVWDEARV 117

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
           A   V  +YSI  L      I+
Sbjct: 118 ALEGVFGRYSIAQLAAAEREIR 139


>gi|330992600|ref|ZP_08316548.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760799|gb|EGG77295.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 137

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IRVL+Y A + +    + +I+++  IS   L K++  L  AG+V   RGR
Sbjct: 1   MRLTLHTDYAIRVLVYLARNPERRVSVHEISDSHGISHNHLVKVVNRLSHAGVVVARRGR 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG++L C P  +I I D+V+  E     V  C   +   C L   C L  +L +++ AF
Sbjct: 61  SGGLQLPCLP-HEIVIGDIVRLMETDMDSVVACQPENGQHCLLADICRLRHLLAQSMRAF 119

Query: 119 FDVLTQYSIECLVRNRSS 136
             VL + ++  ++ +R +
Sbjct: 120 LKVLDETTLNDILPDRRA 137


>gi|144898377|emb|CAM75241.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 140

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L+Y ++  +  + + +I+E   IS   L KI++ L + G + TVRG+
Sbjct: 1   MKITQFTDYSLRLLIYLSMRREGVSTVREISEFYSISSEHLKKIVRRLSELGHIRTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L R  DQI +  +++ +E    V  C  S    CP+ G C L SV+  A +AF 
Sbjct: 61  HGGLMLAREPDQINLGALLRQSENLNLVP-CHDSGDT-CPIFG-CKLRSVIEDARDAFL 116


>gi|331085024|ref|ZP_08334111.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408724|gb|EGG88189.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 152

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +++  P  IS IA    ISE +L +++  L KAG+++++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R  + I++ DV++A E +    EC   H  + C   G C    V +K   + 
Sbjct: 61  AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              + +  ++ LV    ++K
Sbjct: 121 NQTVDEIKLDRLVEESKAMK 140


>gi|223935874|ref|ZP_03627789.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
 gi|223895475|gb|EEF61921.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
          Length = 153

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R +Y +R L+   ++ D    RI  I++   I + FL +IL  L  AGIV++ RG
Sbjct: 1   MKLSLRGEYALRALIVLGLNYDQSVVRIQTISDQQNIPKRFLEQILNDLKTAGIVDSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116
             GG RL +  DQIT+  V++  E       C +     K  CP    CG+ S++++  +
Sbjct: 61  VSGGYRLGKAPDQITLATVIRYIEGPLAPVSCVSEKFYEKCSCPDESKCGIRSIMKEVRD 120

Query: 117 AFFDVLTQYSI 127
           A   +L   ++
Sbjct: 121 AIVKILDGVTV 131


>gi|256827284|ref|YP_003151243.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
 gi|256583427|gb|ACU94561.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
          Length = 170

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+R DY  R+L     H D    +++I+E   I   F   I   LV+AG V TVRG 
Sbjct: 1   MELTRRCDYACRILRSAYRHRDRFVSVAEISEEEEIPYAFARTIQHDLVQAGYVRTVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117
            GG++L     Q+T+LDV+ A +    V+ C A  +  C     C    L  V  K LN 
Sbjct: 61  HGGLQLAIDLSQVTVLDVLHALQGEVTVSACAADPQ-SCSKSEGCRFNQLWQVADKMLNT 119

Query: 118 FFDVLT 123
            FD +T
Sbjct: 120 LFDSVT 125


>gi|221194677|ref|ZP_03567734.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
 gi|221185581|gb|EEE17971.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
          Length = 142

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 5/119 (4%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y +R +   A+H+ + + +  ++E   IS  +L +++  + KAG VE++RG+ GG RL R
Sbjct: 11  YALRAMADLAVHDGWIS-LGDVSERQHISRKYLEQVISLMHKAGYVESLRGKGGGYRLTR 69

Query: 69  PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123
             ++ T+ ++++ATE +   A C   +++  CP +GSC   ++ R   K  ++F D  T
Sbjct: 70  KPEEYTLGEILRATEGNLAPASCLNCTNETLCPQMGSCTTVNIWRDLGKMTSSFLDSKT 128


>gi|167750933|ref|ZP_02423060.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
 gi|167656112|gb|EDS00242.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
 gi|291557420|emb|CBL34537.1| rrf2 family protein (putative transcriptional regulator)
          [Eubacterium siraeum V10Sc8a]
          Length = 135

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T  TDY IR++ +  + ND       I+E   + + F  KIL+ L  AGIV + +G 
Sbjct: 1  MHITLETDYAIRIVDFM-VKNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
          +GG  L R   ++++ DVV+A E ++  + C   H
Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEGTYMFSRCLDGH 94


>gi|225018254|ref|ZP_03707446.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
           DSM 5476]
 gi|224948951|gb|EEG30160.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R++   A H N     + +IA+   IS+ +L +I+  L  AG+V++VRG
Sbjct: 1   MKISTKGRYGLRLMFELAYHYNKGLVPLKEIAKRQEISDKYLEQIIMRLNHAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L  P ++ T+ +V+   E S  V EC  ++ ++C  + SC    +  K   A  
Sbjct: 61  AQGGYMLAAPPEETTVEEVLTVLEGSLCVVECIGANGVECKNINSCPTYGIWSKINQAIQ 120

Query: 120 DVLTQYSIECLVRN 133
            V++  ++  +V +
Sbjct: 121 QVVSNITLADMVED 134


>gi|20807692|ref|NP_622863.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516241|gb|AAM24467.1| predicted transcriptional regulator [Thermoanaerobacter
           tengcongensis MB4]
          Length = 149

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YGI+ +   A++  + P  +  IAE   +SE +L +++  L KA +V++VRG
Sbjct: 1   MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLMAILRKADLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   A+C       +C   G C    V+ +  ++ 
Sbjct: 61  AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVVEDTPFECSRAGGCPTKLVMERIRDSI 120

Query: 119 FDVLTQYSIECLVRN 133
             V+   +++ +V +
Sbjct: 121 NKVIDSITLQDMVED 135


>gi|51241738|dbj|BAD36774.1| CDG1D [Gluconacetobacter xylinus]
          Length = 138

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA+   IS+  L K++  L   G++   RGR
Sbjct: 1   MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAQTHSISQNHLVKVVNRLSSNGVILARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L     QI I D+++  E     +  C   +   C L  +C L  +  K++NAF 
Sbjct: 61  SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLRGLFAKSVNAFL 120

Query: 120 DVLTQYSIE 128
            VL + ++ 
Sbjct: 121 SVLDRITLH 129


>gi|313620173|gb|EFR91654.1| putative transcriptional regulator [Listeria innocua FSL S4-378]
          Length = 138

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 11/136 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG VE+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
            G  GG +L  PA+ I+ LDV++A E   +FF  +   +H    P    C +  V+ KA 
Sbjct: 59  TGVNGGYKLAEPANSISFLDVIQAIEGKAAFFHCDP-KNHSESQP---HCLIGEVMNKAE 114

Query: 116 NAFFDVLTQYSIECLV 131
               D L++ ++  +V
Sbjct: 115 QQMEDYLSKQAVGSIV 130


>gi|254490830|ref|ZP_05104013.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
           DMS010]
 gi|224464002|gb|EEF80268.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
           DMS010]
          Length = 129

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY A++ D+   I+ IA+   ISE  L K++  L +   ++T+RG+ GG+RL +   +I+
Sbjct: 1   MYLALNQDHVVTIANIADTYKISENHLTKVVHYLGQQAYIKTIRGKGGGMRLNKTPTEIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + D+ + TE    +  C      DC ++  C L ++L ++  A + V  +Y++  LV ++
Sbjct: 61  LGDLFRKTEGKAGLLPCVNGEG-DCCIMSVCRLIAILNESQQALYHVFDKYTLADLVVDK 119

Query: 135 SSIKKIF 141
            S+ +I 
Sbjct: 120 FSLSQIL 126


>gi|88800857|ref|ZP_01116412.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
 gi|88776430|gb|EAR07650.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
          Length = 154

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +   T+Y  R+L+    +      +S+IA A  IS   L K+   L++  +V+TVRGR
Sbjct: 1   MKINSFTNYSFRILIMLGANPGRTIPLSEIASAYGISINHLKKVAARLIEQSLVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  + I + ++ + ++      EC  +    C +   C L  + +KAL  F D
Sbjct: 61  SGGLVLKKAPEDIRLGEIFRISQTDTAFVECMDASSEGCVISPVCRLQGIFQKALAQFID 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            +  Y++  LV N+  I    N
Sbjct: 121 TMDGYTLADLVENKDDINVHLN 142


>gi|325282545|ref|YP_004255086.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
 gi|324314354|gb|ADY25469.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
          Length = 163

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGIVE 55
           M ++ +  YG+R L+        P       +  +AE   +S+ +L +I   L +AG ++
Sbjct: 1   MWVSTKAQYGLRALIEIGRGGGTPGEGRAVPLKDVAERQDLSQHYLEQIASNLRRAGFIK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           +VRG  GG RL RPADQI+  DVV A E S    EC   + + C     CG   + ++  
Sbjct: 61  SVRGAYGGYRLARPADQISAYDVVTALEGSIAPVECVEENHV-CDGKNVCGTLDLWQRVD 119

Query: 116 NAFFDVLTQYSIECLVRN 133
            A  DVL   ++  L+ +
Sbjct: 120 QALRDVLGSTTLADLIED 137


>gi|312792436|ref|YP_004025359.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877006|ref|ZP_07736980.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796237|gb|EFR12592.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312179576|gb|ADQ39746.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 137

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY +R++++ +           IA+   I + FL KI + LVKAGI+E+VRG+
Sbjct: 1   MKLTQAADYALRMVLHLSKKRGMVVEADTIAQEEKIPKRFLLKISRDLVKAGIIESVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L +  ++IT+ DV+ A E +  +  C +     +    G C +       +    
Sbjct: 61  NGGYTLAKKPEEITMKDVIIAVEGTLALTRCLYDPLACNKKATGYCAVHKAFCSVMEKVS 120

Query: 120 DVLTQYSIECLV 131
           D L +Y+ + LV
Sbjct: 121 DELEKYTFDKLV 132


>gi|242280449|ref|YP_002992578.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242123343|gb|ACS81039.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 143

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A H    P RIS IA    +S  +L K+++ L KAG + + RG
Sbjct: 1   MRLTTRSRYGTRMILDIATHCTAGPVRISDIASRQGLSTKYLEKLIRELKKAGFIASKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + IT+  VV++ E    + EC  +  + C  + +C    V  KA  A +
Sbjct: 61  PGGGHSLAMAPEDITVGAVVRSLEGDAGLVECLDNDDL-CKRIDNCPTREVWIKASKAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L + SI  L++  S
Sbjct: 120 AALDEISIADLLKEGS 135


>gi|94967516|ref|YP_589564.1| BadM/Rrf2 family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549566|gb|ABF39490.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 145

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+ DYG+  + + A + D        +AE   + +  L K+LQ L KAG++++ +G
Sbjct: 2   LKLTKKADYGLIAMRHLAANADLGACSAKDLAEMYGLPQEALAKLLQRLTKAGLLQSQQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I+ LDV++A E   F+  C  + K  C     C +   LRK   +  
Sbjct: 62  TNGGYTLARNPRSISALDVIRALEGPLFMTSC-TTAKGSCEQTSKCTVREPLRKVSKSIE 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DVL + +I  +  +   ++ +  
Sbjct: 121 DVLGRLTIAEMCESEEPVRDLVT 143


>gi|326201925|ref|ZP_08191795.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987720|gb|EGD48546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
          Length = 148

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 15/151 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H       +  +AE   +SE +L ++   L K+G+V+++RG
Sbjct: 1   MKVSTKGRYGLRAIVDLAAHESEGQVSLKSVAERQKLSENYLEQLFSSLKKSGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---------GLTSV 110
            +GG  L RPAD+IT+ D++++ E +    EC     ID  L GSC          + + 
Sbjct: 61  AQGGYLLSRPADKITVGDILRSLEGTLCPVEC-----IDPDLPGSCDRADECVTADVWAK 115

Query: 111 LRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           +R  +N   D +T   +   + N+++   I+
Sbjct: 116 IRDKINEVVDSITLADLVSELANKTNDDYIY 146


>gi|217970313|ref|YP_002355547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217507640|gb|ACK54651.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 171

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 9/123 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++K TDYG  +L + A H D  +  + +AEA  +    + K+L+ L +  +V + RG  G
Sbjct: 4   ISKLTDYGTLILTHMAGHPDRLHSAAGLAEALGLGLPTVSKVLKTLGRHELVSSQRGAHG 63

Query: 63  GVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC-------GLTSVLRKA 114
           G  L RP D+IT+ DV+ A EE +F + EC +S  + C +   C        + +V+R+A
Sbjct: 64  GYALARPPDRITVADVIDALEEQAFGLTECSSSSGV-CAIESDCRIRENWMRINTVVRQA 122

Query: 115 LNA 117
           L A
Sbjct: 123 LQA 125


>gi|225388530|ref|ZP_03758254.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
           DSM 15981]
 gi|225045409|gb|EEG55655.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
           DSM 15981]
          Length = 144

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++  A+H D  P +I  IA+   IS  +L +I+  L +AG V ++RG
Sbjct: 1   MLISTKGRYALRTMVDLALHADGEPVKIKDIAKRQEISGKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA   T+  +++ TE S    +C       C     C    + ++   A  
Sbjct: 61  NQGGYYLARPAKDYTVGMILRVTEGSLAPVDCLTGDDNPCARQQECVTLKLWKELDGAIR 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           DV+  Y+++ LV+ + +++  +
Sbjct: 121 DVVDGYTLDDLVQWQRAMQDNY 142


>gi|78485133|ref|YP_391058.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363419|gb|ABB41384.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 145

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK+TD+  RVL+Y A       + I  I++   IS+  L K++Q LV  G+V +VRG
Sbjct: 1   MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLVSHGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +   +IT+ +V++  E +     C    +  C +   C L   L +A N + 
Sbjct: 61  QHGGIYLEKELHEITLREVIELMEATLTPVNC---DEPGCKIKEVCQLKIYLVEAQNQYL 117

Query: 120 DVLTQYSIECLVRN 133
             L Q+++  +V +
Sbjct: 118 TYLEQFTLADIVND 131


>gi|297616499|ref|YP_003701658.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144336|gb|ADI01093.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 144

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A+H N+ P  +  +AE   +SE +L +++ PL KAG+V++VRG
Sbjct: 1   MKVSTKGRYGLRAMLDMALHQNEGPMAVHIVAERQGLSERYLEQLMVPLKKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    IT+ ++++A E      +C +     +C     C    +  K  ++ 
Sbjct: 61  PQGGYVLTKKPRDITVGEIIRALEGPIAPVDCVSEQTPEECERAEFCVTRLIWSKMRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL   S+E L++    I
Sbjct: 121 AEVLDSLSLEDLIQESRKI 139


>gi|83590920|ref|YP_430929.1| BadM/Rrf2 family transcriptional regulator [Moorella
          thermoacetica ATCC 39073]
 gi|83573834|gb|ABC20386.1| transcriptional regulator, BadM/Rrf2 family [Moorella
          thermoacetica ATCC 39073]
          Length = 136

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57
          M L + TDY  R ++Y A     P  I++   IA    I   FL KI++ LV+AGIV++ 
Sbjct: 1  MRLNQATDYAFRAVLYLAKLE--PGTIAEAQMIASREDIPMRFLLKIMRSLVQAGIVQSY 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          RG  GG  L RPA +IT+LDVV+A E    V  C 
Sbjct: 59 RGVSGGFALARPAREITLLDVVEAVEGPVSVNRCL 93


>gi|167037461|ref|YP_001665039.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040123|ref|YP_001663108.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256752922|ref|ZP_05493755.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|289578240|ref|YP_003476867.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermoanaerobacter italicus Ab9]
 gi|297544520|ref|YP_003676822.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|300914207|ref|ZP_07131523.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X561]
 gi|307265215|ref|ZP_07546774.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|307724558|ref|YP_003904309.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
           X513]
 gi|320115875|ref|YP_004186034.1| Rrf2 family transcriptional regulator [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326390150|ref|ZP_08211711.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|166854363|gb|ABY92772.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X514]
 gi|166856295|gb|ABY94703.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748202|gb|EEU61273.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|289527953|gb|ADD02305.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           italicus Ab9]
 gi|296842295|gb|ADH60811.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|300889142|gb|EFK84288.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X561]
 gi|306919837|gb|EFN50052.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|307581619|gb|ADN55018.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X513]
 gi|319928966|gb|ADV79651.1| transcriptional regulator, Rrf2 family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325993798|gb|EGD52229.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 149

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YGI+ +   A++  + P  +  IAE   +SE +L +++  L KA +V++VRG
Sbjct: 1   MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLIAILRKADLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVL---RKAL 115
            +GG  L  P D+IT+ DV++  E S   A+C       +C   G C    V+   R ++
Sbjct: 61  AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVLEDTPFECSRAGGCPTKLVMERIRDSI 120

Query: 116 NAFFDVLT 123
           N   D +T
Sbjct: 121 NKVIDSIT 128


>gi|28198602|ref|NP_778916.1| hypothetical protein PD0694 [Xylella fastidiosa Temecula1]
 gi|71897700|ref|ZP_00679945.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|182681285|ref|YP_001829445.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa M23]
 gi|28056686|gb|AAO28565.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|71732603|gb|EAO34656.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|182631395|gb|ACB92171.1| transcriptional regulator, BadM/Rrf2 family [Xylella fastidiosa
           M23]
 gi|307579736|gb|ADN63705.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 153

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 1/109 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+V   RG 
Sbjct: 2   LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVAGRRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
            GG RL R   +IT++ +V+A E    + EC   H   C +   CG+ S
Sbjct: 62  YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRS 109


>gi|313624752|gb|EFR94699.1| putative transcriptional regulator [Listeria innocua FSL J1-023]
          Length = 138

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 11/136 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
            G  GG +L  PA  I+ LDV++A E   +FF  +   +H    P    C +  V+ KA 
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKAAFFHCDP-KNHSESQP---HCLIGEVMNKAE 114

Query: 116 NAFFDVLTQYSIECLV 131
               D L++ +I  +V
Sbjct: 115 QQMEDYLSKQTIGSIV 130


>gi|239977954|ref|ZP_04700478.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 144

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 1   MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPAD+IT+LDV +A +         +   +  P  G+ GL  V R+  +A   
Sbjct: 61  EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 119

Query: 121 VLTQYSIECLVRNRS 135
           +L   ++  L+ + +
Sbjct: 120 ILQGVTLTSLLADEA 134


>gi|73542904|ref|YP_297424.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72120317|gb|AAZ62580.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 150

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A      P  I+++ +   +S   L K+   L K G +   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARADGSRPITIAEVGQQFEVSHHHLVKVAARLSKLGWITATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   ADQ+TI  +++  E    V +C       C L G+C L   L +A  AF+
Sbjct: 61  RHGGLELGPQADQLTIGTILRELEGHKPVIDC---DDPPCALKGNCRLRRALDEAEQAFY 117

Query: 120 ---------DVLTQYSIECLVR 132
                    DV    + E ++R
Sbjct: 118 RSLDTVTLADVTGSQTAESIIR 139


>gi|310824816|ref|YP_003957174.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397888|gb|ADO75347.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 177

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++    ND P     +AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL +  + I+ L++V A E    + +C         F          G C + +V+ 
Sbjct: 63  GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  +  + L + S+
Sbjct: 123 RAEKSMRETLAKESL 137


>gi|182413876|ref|YP_001818942.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841090|gb|ACB75342.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
           PB90-1]
          Length = 200

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57
           M L+K+ +Y +R L+   I  +   ++ Q++E     +L   FL +I+Q L   G V +V
Sbjct: 1   MKLSKKGEYALRSLINLGIAAEMGRKLVQVSELADYEQLPVKFLEQIMQALKDEGFVVSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKA 114
           RG+ GG RL +PA QI I  VV+  +       C +        CP    CGL  ++   
Sbjct: 61  RGKFGGYRLAKPAKQILIGQVVRLIDGPLAPIGCVSQTAYVPCTCPDETHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQYSIECLV 131
            NA  ++L +YS+  +V
Sbjct: 121 RNAIANILDRYSLADVV 137


>gi|116622605|ref|YP_824761.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225767|gb|ABJ84476.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 141

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  DY +R++++ A + +D     + +A AC I E F+ KILQ L ++G++ + RG
Sbjct: 1   MQLTRAADYAVRMMIHLATLPSDSRTNRAALAAACEIPEPFVGKILQTLTRSGLIASHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P   +++LDV++A E    +  C       C     C    V  +A +A  
Sbjct: 61  VNGGFGLTQPPTAVSLLDVIEAVEGPTLLNICIRPGD-SCARKSWCPAHPVWVEAQHAMT 119

Query: 120 DVLTQYSIECLVRN 133
            VL + ++  L ++
Sbjct: 120 AVLGRATLASLAQS 133


>gi|291449865|ref|ZP_06589255.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291352814|gb|EFE79716.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 147

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 4   MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPAD+IT+LDV +A +         +   +  P  G+ GL  V R+  +A   
Sbjct: 64  EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 122

Query: 121 VLTQYSIECLVRNRS 135
           +L   ++  L+ + +
Sbjct: 123 ILQGVTLTSLLADEA 137


>gi|124516103|gb|EAY57611.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
 gi|206602891|gb|EDZ39371.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 156

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+ DY +  L + +   +     I +++EA  I    L K+LQ L K GI+++   
Sbjct: 2   LKLTKKVDYALLALSFLSQQEEGQVVNIREVSEAYQIPTEILAKVLQRLSKKGILQSHHA 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +PA  ++ILDV+ A + S  +  C   H   C  + +C + S L +      
Sbjct: 62  PKGGYSLKKPARNVSILDVINAIDGSVGILSCSDGHDKTCQQIDNCDIRSPLERIQGKIM 121

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            +L   S+E  + +  +   + + 
Sbjct: 122 WLLEDMSLEEFIHSEPTTGGVLHG 145


>gi|134300796|ref|YP_001114292.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
           reducens MI-1]
 gi|134053496|gb|ABO51467.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           reducens MI-1]
          Length = 137

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL------FLFKILQPLVKAGIV 54
           M L + TDY  R ++Y +     P    Q++EA  I+E       FL KIL+ L  AGI+
Sbjct: 1   MKLNQATDYAFRAVLYLS---RLPK--GQVSEAKAIAEQENIPIRFLLKILRSLTAAGII 55

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSC-G 106
           E+ RG  GG  L R    IT+LDVV+A E    V  C         +H   CP+  +   
Sbjct: 56  ESYRGVSGGYALAREPKDITMLDVVEAVEGPVEVNRCLIAPESCNKNHTARCPMHRALYA 115

Query: 107 LTSVLRKALNAF-FDVLTQYS 126
           +   L + LN++ F  L+ Y+
Sbjct: 116 IQQNLNQQLNSYNFADLSHYN 136


>gi|257093906|ref|YP_003167547.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046430|gb|ACV35618.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 146

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +R L+Y     D    I +IAE   +S   L K++  L++AG VE +RG+
Sbjct: 1   MYITQHTDYALRALIYLGTSGDRLVTIQEIAERFGVSRNHLMKVVNALIRAGFVEGLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +I +  VV+  E    + ECF S    C L   C L   L +AL AF  
Sbjct: 61  GGGLRLARAPGEIIVGAVVRQMEPGMCLVECFGS-GCQCILDPDCKLKVGLARALAAFLQ 119

Query: 121 VLTQYSIECLV-RNRSSIKKIF 141
           VL + ++  LV ++  SI K  
Sbjct: 120 VLDEMTLADLVGKSERSILKFL 141


>gi|16799715|ref|NP_469983.1| hypothetical protein lin0640 [Listeria innocua Clip11262]
 gi|16802678|ref|NP_464163.1| hypothetical protein lmo0636 [Listeria monocytogenes EGD-e]
 gi|224502064|ref|ZP_03670371.1| hypothetical protein LmonFR_06027 [Listeria monocytogenes FSL
           R2-561]
 gi|255030335|ref|ZP_05302286.1| hypothetical protein LmonL_16821 [Listeria monocytogenes LO28]
 gi|16410025|emb|CAC98714.1| lmo0636 [Listeria monocytogenes EGD-e]
 gi|16413080|emb|CAC95872.1| lin0640 [Listeria innocua Clip11262]
          Length = 138

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG VE+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|325661219|ref|ZP_08149846.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472726|gb|EGC75937.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 180

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+ +  YG+R L+  A +++  P  IS IA    ISE +L +++  L KAG+++++RG
Sbjct: 29  LKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 88

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R  + I++ DV++A E +    EC   H  + C   G C    V +K   + 
Sbjct: 89  AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 148

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              + +  ++ LV    ++K
Sbjct: 149 NQTVDEIKLDRLVEESKAMK 168


>gi|269137717|ref|YP_003294417.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
 gi|267983377|gb|ACY83206.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304557773|gb|ADM40437.1| Nitrite-sensitive transcriptional repressor NsrR [Edwardsiella
           tarda FL6-60]
          Length = 124

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+Q+ E   +S   + KI+  L +AG V  VRG+ GG+RL RPA +I I DVV+  E   
Sbjct: 12  ITQVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGDVVRELEPLT 71

Query: 87  FV--AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  ++ F      C +  +C L  VL +A +AF   L Q ++  L+ +   + K+ 
Sbjct: 72  LVNCSQAF------CHITPACRLKQVLHRATDAFLAELDQCTLADLIEHNPPLYKLL 122


>gi|291619084|ref|YP_003521826.1| YjeB [Pantoea ananatis LMG 20103]
 gi|291154114|gb|ADD78698.1| YjeB [Pantoea ananatis LMG 20103]
 gi|327395416|dbj|BAK12838.1| transcriptional regulator YjeB [Pantoea ananatis AJ13355]
          Length = 152

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L +AG V  +RG
Sbjct: 6   VQLTSFTDYGLRALIYMATLPEGRLTNITEVTDTYGVSRNHMVKIINQLSRAGFVSAIRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL   A  I I +VV+  E    V +C      +C +  +C L   L  A+  F 
Sbjct: 66  KNGGIRLGMSARDIVIGEVVRKMEPLQLV-DCS-----NCSIAPACRLKKALHDAVQLFL 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV   + + +I 
Sbjct: 120 QELDGYTLADLVEGNTPLYEII 141


>gi|315281262|ref|ZP_07869928.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
 gi|313615086|gb|EFR88564.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
          Length = 138

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG VE+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMDDYLSKQTVGSIV 130


>gi|229816044|ref|ZP_04446365.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
           13280]
 gi|229808358|gb|EEP44139.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
           13280]
          Length = 169

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A  N     +   AEA  +   F   I   LV+AGIVE++RG 
Sbjct: 10  MDISRKTDYALRMLAMLAEGNKSLLSVRTAAEAVDVPYSFARSIQHGLVQAGIVESLRGV 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL     +ITI  +V+A +    + +C A   + CP +  C    +   A     D
Sbjct: 70  RGGMRLRLKPSEITIRQIVEAVQGPLVMNDCTAEEGM-CPRMECCCYHPIWAGAQELLRD 128

Query: 121 VLTQYSIECLVRNRS 135
            L   +++ +V +R 
Sbjct: 129 YLDSVTLDDVVNHRQ 143


>gi|218780199|ref|YP_002431517.1| BadM/Rrf2 family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761583|gb|ACL04049.1| transcriptional regulator, BadM/Rrf2 family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 144

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +YG+R ++Y A        +  ++A    I + FL KI Q L  AGIVE ++G
Sbjct: 1   MRLTRAGEYGVRCILYLAGCPRGEVVKKKEVALNMDIPDQFLSKIAQQLAVAGIVEIIQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG+RL R A  +++LDVV+A     F+ +C  S    C    +C +  V  KA     
Sbjct: 61  SRGGLRLARDAKDVSLLDVVEAITGEIFLNDCV-SDPNSCRNQPTCSVHRVWSKARMQLR 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L   +   LV     ++K
Sbjct: 120 ETLGLATFAGLVEEGHCLQK 139


>gi|307243658|ref|ZP_07525799.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492968|gb|EFM64980.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
           DSM 17678]
          Length = 154

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A+  + + P  +  IA    IS+ +L +I   L KAG+V++VR
Sbjct: 1   MKLSTKGKYGLKAMFELAVSGNENEPVPLKYIANRQEISDQYLEQIFSALKKAGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +PA +IT+ D+++  E      EC       C    SC    V  +   A 
Sbjct: 61  GAQGGYFLSKPASEITVADILRVLEGDMAFTECLLDEDA-CKNFDSCSTRYVWARIKQAI 119

Query: 119 FDVLTQYSIECLVRNRSS 136
            DV    S++ +  + +S
Sbjct: 120 EDVTMSISLQDMADDYNS 137


>gi|91790106|ref|YP_551058.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699331|gb|ABE46160.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 154

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDYG  ++ + A    +    +++A A  ++     KIL+ L +A +++++RG 
Sbjct: 2   LRLSKLTDYGTVIMTHMARQPAHVYSAAEVALAVSVTVPTASKILKTLARANLLQSLRGT 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP D+I+I +VV A E    V EC A+  + C   GSC L +  +       +
Sbjct: 62  HGGYLLSRPPDEISIAEVVDAMEGPVGVTECSAAVGL-CAQEGSCSLRANWQHVNQVIRN 120

Query: 121 VLTQYSI 127
           VL+  ++
Sbjct: 121 VLSDLTL 127


>gi|312881138|ref|ZP_07740938.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784429|gb|EFQ24827.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 152

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +H ++     +  ++  A        +  +AEA   SE  L K++Q L KAGI+   RG 
Sbjct: 5   LHFSEAASLAVHGVLLLAASGGEHRTVRSLAEAVGASEAHLAKVVQRLGKAGILSCTRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGV L RPA +IT+L+V +A E       C    +  CP  G+C    +L +      D
Sbjct: 65  RGGVFLARPAGEITLLEVYEAVEGPLDRGGCVLG-RSACPF-GACLFGGLLERVSGEVRD 122

Query: 121 VLTQYSIECLVRNRS 135
            L   ++E   ++R 
Sbjct: 123 FLAATTLEDFWKSRG 137


>gi|323704140|ref|ZP_08115719.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536206|gb|EGB25978.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 149

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++  + P  +  IAE   +SE +L +++  L KA +V+++RG
Sbjct: 1   MRLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   ++C       +C   G C    VL K  +A 
Sbjct: 61  AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDIPFECSRSGGCPTKVVLEKIRDAI 120

Query: 119 FDVLTQYSIECLVRN 133
             V+   +++ +V +
Sbjct: 121 NKVIDSITLQDMVDD 135


>gi|226309029|ref|YP_002768989.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229491718|ref|ZP_04385539.1| transcriptional regulator [Rhodococcus erythropolis SK121]
 gi|226188146|dbj|BAH36250.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
           PR4]
 gi|229321399|gb|EEN87199.1| transcriptional regulator [Rhodococcus erythropolis SK121]
          Length = 149

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A+ + D       +A+   +S     K++  L + GIV T RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVLDADASPSTRDVAQQLNVSYSHATKVVTRLGELGIVTTRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       TI  + +  E    V +C       CPL G C L S LR+A  AFF
Sbjct: 61  RGGGLSITELGRTATIGWLARRLEGPGEVVDCEGDKP--CPLRGGCLLRSALREAQEAFF 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   +IE ++R  S
Sbjct: 119 VSLDAVTIEDVIRQPS 134


>gi|238918376|ref|YP_002931890.1| transcriptional repressor NsrR [Edwardsiella ictaluri 93-146]
 gi|238867944|gb|ACR67655.1| HTH-type transcriptional regulator NsrR [Edwardsiella ictaluri
           93-146]
          Length = 124

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+Q+     +S   + KI+  L +AG V  VRG+ GG+RL RPA +I I DVV+  E   
Sbjct: 12  ITQVTAVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGDVVRELEPLT 71

Query: 87  FV--AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  ++ F      C +  +C L  VLR+A +AF   L Q ++  L+ +   + K+ 
Sbjct: 72  LVNCSQAF------CHITPACRLKQVLRRATDAFLTELDQCTLADLIEHNPPLYKLL 122


>gi|313895892|ref|ZP_07829446.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320530715|ref|ZP_08031759.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|312975317|gb|EFR40778.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320137002|gb|EFW28940.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 147

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+H  +    I  IA++  ISE +L +++ PL +AG+VE+VRG
Sbjct: 1   MKLSTKGRYSVTALYELALHYGEGVVPIKTIAKSQGISENYLEQLMLPLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-----CPLVGSCGLTSVLRKA 114
            +GG  L RP  ++TI +++ A E    + +C  +  +D     C   G+C    +  + 
Sbjct: 61  AQGGYTLSRPPAEVTIGEIITAVEGPIALVDCLLT-DVDAGDQSCVHAGACATRQIWEEV 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A   VL   S+  L+R 
Sbjct: 120 CAAINSVLNNISLAHLLRG 138


>gi|254421110|ref|ZP_05034834.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
 gi|196187287|gb|EDX82263.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
          Length = 146

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ R+ Y +R +++ A +    P  I +IAEA      FL  IL  L +  ++ + RGR 
Sbjct: 2   LSNRSRYALRAMIHLAGLPGGGPATIGEIAEAATAPRKFLEAILLDLRRQNLLVSKRGRT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSCGLTSVLRKALNA 117
           GG  L  PA+ I+  DV++A E    +A C +  +H     CP V +C L  VL+   +A
Sbjct: 62  GGYALAAPAETISFADVIRALEGPLALAPCASRTAHGPCETCPDVETCPLQPVLQDGRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              V    S+     N S I  +
Sbjct: 122 VAAVFEARSLLQAASNPSPIDPV 144


>gi|78045031|ref|YP_361013.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997146|gb|ABB16045.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 148

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ +   A+H  + P  IS+IA    ISE +L ++   L KAG++++VRG
Sbjct: 1   MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLRKAGLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSC---GLTSVLRKAL 115
            +GG  L R  ++IT+ +VV+  E      EC + + K  C    +C    + + +R AL
Sbjct: 61  AQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEACDQADACISRVVWAKVRDAL 120

Query: 116 NAFFDVLT 123
           N   D +T
Sbjct: 121 NKVLDSIT 128


>gi|149908898|ref|ZP_01897558.1| Rrf2 family protein [Moritella sp. PE36]
 gi|149808172|gb|EDM68113.1| Rrf2 family protein [Moritella sp. PE36]
          Length = 148

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T  TD+GIR LMY + +     +  +++AE    S   + K++  L     +E+ RG+ 
Sbjct: 7   ITTYTDFGIRTLMYLSTLPKGQRSSSAEVAEVYQASRNHIAKVIAHLSSLNYIESSRGKN 66

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG+ L + A +I I  +V+A E +    + F ++  D  LV +  L ++L+  + AF   
Sbjct: 67  GGIWLAKSASEINIGQLVRALENNL---KGFDNNTQDSELVPTYQLKNLLQTGIEAFLKT 123

Query: 122 LTQYSIECLV 131
           L QYS+  L+
Sbjct: 124 LDQYSLADLL 133


>gi|283835886|ref|ZP_06355627.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
           ATCC 29220]
 gi|291068057|gb|EFE06166.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
           ATCC 29220]
          Length = 167

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  LM C + +    R   + +IAE   +   +L KI   L KAG+V ++ G+ GG 
Sbjct: 9   EYGIHSLM-CMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115
           +L +PA+ IT+LDVV A +    + EC         F     +    G CG+ SV+  A 
Sbjct: 68  QLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVRSVMDMAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L Q++I  L R 
Sbjct: 128 QRMEEALGQHTILDLARK 145


>gi|329115226|ref|ZP_08243981.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
 gi|326695669|gb|EGE47355.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
          Length = 169

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H +    I +IA    ISE  L KI+  L + G V+T+RGR
Sbjct: 13  MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFVDTLRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115
            GG+ L R  + I I DVV+ TE+   +  C +         +C L  +C L   L +AL
Sbjct: 73  GGGLMLGRAPEDIRIGDVVRHTEDDMALVSCMSPSPGVPGSAECLLARACHLRGALGEAL 132

Query: 116 NAFFDVLTQYSI 127
           +AF  VL   ++
Sbjct: 133 DAFMAVLDSRTL 144


>gi|46906881|ref|YP_013270.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47091594|ref|ZP_00229390.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|224498715|ref|ZP_03667064.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
 gi|226223260|ref|YP_002757367.1| hypothetical protein Lm4b_00657 [Listeria monocytogenes Clip81459]
 gi|254824091|ref|ZP_05229092.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|254828298|ref|ZP_05232985.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|254932089|ref|ZP_05265448.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|254994106|ref|ZP_05276296.1| hypothetical protein LmonocytoFSL_14839 [Listeria monocytogenes FSL
           J2-064]
 gi|255023288|ref|ZP_05295274.1| hypothetical protein LmonocyFSL_07190 [Listeria monocytogenes FSL
           J1-208]
 gi|255520380|ref|ZP_05387617.1| hypothetical protein LmonocFSL_03972 [Listeria monocytogenes FSL
           J1-175]
 gi|290892831|ref|ZP_06555822.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|46880147|gb|AAT03447.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019913|gb|EAL10650.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|225875722|emb|CAS04425.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258600690|gb|EEW14015.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|290557643|gb|EFD91166.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293583644|gb|EFF95676.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|293593322|gb|EFG01083.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|328467204|gb|EGF38284.1| hypothetical protein LM1816_00045 [Listeria monocytogenes 1816]
 gi|328475713|gb|EGF46459.1| hypothetical protein LM220_02615 [Listeria monocytogenes 220]
 gi|332311056|gb|EGJ24151.1| Rrf2 family transcriptional regulator [Listeria monocytogenes str.
           Scott A]
          Length = 138

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|302672152|ref|YP_003832112.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
           B316]
 gi|302396625|gb|ADL35530.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
           B316]
          Length = 135

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+RV+   A H N     +  IA    I+  +L +I+  L KAG +E++RG
Sbjct: 1   MRISTKGRYGLRVMTDLAAHYNGEYISLKDIAVRLGITVKYLEQIVTALNKAGYLESMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +   +  + D+++  E +F   EC A    +CPL  SC   +  +   +   
Sbjct: 61  TNGGHRLAKDPSEYVVGDILRVMEGNFSPVECAAEGMSECPLSDSCASLNFWKGLDDVVN 120

Query: 120 DVLTQYSIECLVRNR 134
             +  Y+++ LV+ +
Sbjct: 121 QYIDSYTLDQLVKQK 135


>gi|115376145|ref|ZP_01463389.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366868|gb|EAU65859.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 264

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++    ND P     +AE   IS  FL KI   L KAGIV    G R
Sbjct: 90  HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 149

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL +  + I+ L++V A E    + +C         F          G C + +V+ 
Sbjct: 150 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 209

Query: 113 KALNAFFDVLTQYSI 127
           +A  +  + L + S+
Sbjct: 210 RAEKSMRETLAKESL 224


>gi|171910736|ref|ZP_02926206.1| RfF2 family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 195

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MHLTK+ +Y +R L+   I          +S +AE   +   F+  ILQ L  AG VE+ 
Sbjct: 1   MHLTKKGEYALRTLIRLGIAQRQGKDVVSVSNLAEGENLPFKFIENILQELRLAGYVESK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKA 114
           RG+ GG RL +P   ITI +VV+  +       C +    +   CP    CGL  ++   
Sbjct: 61  RGKEGGCRLAKPQVDITIGEVVRLIDGRLAPIGCASETDYERCTCPDEHHCGLRMLMIDV 120

Query: 115 LNAFFDVLTQYSIECLV 131
            NA   +L +Y++  +V
Sbjct: 121 RNAIAQILDRYTLADVV 137


>gi|255528018|ref|ZP_05394855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296185461|ref|ZP_06853871.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
 gi|255508287|gb|EET84690.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296050295|gb|EFG89719.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
          Length = 151

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  + P+ I  IAE   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGQYGVKAMVDLAVHYGEGPSSIKSIAERQNISEYYLEQLFSPLRKANLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    +T+ ++++  E    +++C   H  +      C  T +L   +    
Sbjct: 61  AQGGYVLEREPKDMTVFEIMEVLEGPVEISKCIDEHNENSCGNMDCCATRLLWSRIKESI 120

Query: 120 D-VLTQYSIECLVRNRSSIK 138
           D V+   ++E +V +   +K
Sbjct: 121 DSVMKATTLEDMVEDYKKMK 140


>gi|268592506|ref|ZP_06126727.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
           DSM 1131]
 gi|291311912|gb|EFE52365.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
           DSM 1131]
          Length = 180

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H+T   +YGI  L++   + +      ++AE   IS  FL KIL  L KAGIV +  G R
Sbjct: 3   HITVSVEYGIHCLLWFVDNPERSLSSRELAELQGISPSFLAKILPRLEKAGIVSSNEGIR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKI-DCPLVGSCGLTSVL 111
           GG RL  P ++IT L ++ A E    + EC         F  + +    + G+C +  V+
Sbjct: 63  GGYRLALPPEKITFLSIIDAIEGYKPLFECQEIRRRCAVFEENGLPQWAISGTCSVHKVI 122

Query: 112 RKALNAFFDVLTQYSI 127
            +A NA  DVL   ++
Sbjct: 123 LQAENAMRDVLANQTL 138


>gi|303246358|ref|ZP_07332638.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302492421|gb|EFL52293.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 152

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+  +Y IR ++Y A+H D    IS  +IAEA  I   FL K+ Q L +AGI+   +
Sbjct: 1   MRLTRAGEYAIRCVLYLAMHQDR-TLISRKEIAEAMEIPAQFLGKVAQSLSRAGIIAIRQ 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
           G +GG  + +  + +++L VV+A +   F+ +C   H+ D C     C +  V   A   
Sbjct: 60  GAQGGYEMAKAPEAVSLLSVVEAIDGEIFLNDCI--HRPDTCTRQTICSVHRVWETARRQ 117

Query: 118 FFDVLTQYSIECLVRN 133
             + L   ++  L R 
Sbjct: 118 LRETLAGTTLAALARE 133


>gi|220934658|ref|YP_002513557.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995968|gb|ACL72570.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 158

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  AIH+   P  ++ I++   IS  +L ++   L K G+VE VRG
Sbjct: 1   MKLSTKGRYAVTAMMDLAIHDRIGPVTLADISQCQGISLSYLEQLFAKLRKHGLVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
             GG RL +PAD+IT+ +++ A +E+  V  C  +   DC     C LT  L K L+   
Sbjct: 61  PGGGYRLAKPADRITVANIITAVDENVDVTRCQGNE--DCQQGDRC-LTHELWKDLSQQL 117

Query: 117 -AFFDVLT 123
             F D +T
Sbjct: 118 YGFLDGIT 125


>gi|103486168|ref|YP_615729.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976245|gb|ABF52396.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 166

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY + VLM  A       P   + +AE   I      K++  L +AG++   R
Sbjct: 1   MRLSNFADYAV-VLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           G  GGVRL RPA  I++ D+++A E    +  C A  + DC L GSC
Sbjct: 60  GSGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSC 106


>gi|319948404|ref|ZP_08022545.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
 gi|319437958|gb|EFV92937.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
          Length = 152

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M L++ +D  +R LM  A+ ++   R++   IAE+   S   + KI+  LV+ G+ E+ R
Sbjct: 1   MQLSRSSDLALRALMRLAVADEREERMTAAVIAESVEASVSHVAKIVSRLVELGLAESRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  +++  E    V +C       CPL G+CGL   L  A  AF
Sbjct: 61  GRGGGLVITELGRHESVGRLLRRLEGPGEVVQC--EGPTPCPLAGNCGLRRALVDAREAF 118

Query: 119 FDVLTQYSIECLVRN 133
           F  L   +++ +VR 
Sbjct: 119 FATLDPLTVDGIVRT 133


>gi|308071586|ref|YP_003873191.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860865|gb|ADM72653.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 132

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  ++Y  + + D P  +  +A    +S  +L K++  LVKAG++++V G
Sbjct: 1   MKYSQATDYALHAMLYLVMSDSDKPIGVQMLAAKLNVSRTYLSKMMAQLVKAGLIQSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG RL +  + I+ LDV++A E +  + EC   H   C
Sbjct: 61  VNGGYRLRQRGEDISFLDVIQAIEGTASLFECSLDHGTKC 100


>gi|254853166|ref|ZP_05242514.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|300764439|ref|ZP_07074432.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|258606518|gb|EEW19126.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|300514793|gb|EFK41847.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLVGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|34498942|ref|NP_903157.1| hypothetical protein CV_3487 [Chromobacterium violaceum ATCC 12472]
 gi|34104791|gb|AAQ61148.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 146

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT+ TD G+RVLMY  +    P +   I +IAE   +S   L K++  + + G + T 
Sbjct: 1   MQLTRFTDLGLRVLMY--LTGQQPGQLATIPEIAERFEVSRNHLVKVVHFMAQQGWLVTS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG+ L RP +   + +VV+  E    + +C    +  C L   C L   L +AL A
Sbjct: 59  RGKGGGMTLARPPEHYRLGEVVRMLEGKPQLIDCV---EPPCALSRGCLLKGALDEALAA 115

Query: 118 FFDVLTQYSIECLV 131
           FF  L  Y++  +V
Sbjct: 116 FFLSLDGYTLRDIV 129


>gi|258404994|ref|YP_003197736.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
 gi|257797221|gb|ACV68158.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
          Length = 153

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R+ YG+ +L   AIH +  P  IS+IA    +S  +  KI++ L + G + +  G
Sbjct: 1   MKFSTRSRYGLHLLRDIAIHAESGPVSISEIASRHSMSLKYTEKIIRQLRQGGWLSSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L R A  + + ++V+  E+S  + +C    +  CP  G C   S+ ++AL A +
Sbjct: 61  ARGGYQLTRQASAMPLGEIVRYLEDSPLLLDC-QKLRPGCPRCGVCLTRSLWQEALEAMY 119

Query: 120 DVLTQYSIECLVRN 133
             L  +++  LVR+
Sbjct: 120 AKLDSFTLADLVRD 133


>gi|86741718|ref|YP_482118.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86568580|gb|ABD12389.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 143

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT+ TD  +R LM  A   D    +  +++A  +    + KI+Q L +  +V TVRGR
Sbjct: 1   MHLTQSTDLALRALMLTATREDRLT-VRDLSKALDVPLTHMAKIVQRLQRLDLVVTVRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L   A Q+T+  +V+A E +     C       CPL  +C L  +LR+A   F  
Sbjct: 60  TGGVLLAPGATQVTVGHIVRALEGTDEFVSCDGP---PCPLRCACRLRPLLRRAQENFLV 116

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 117 TLDEVTL 123


>gi|298207782|ref|YP_003715961.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850420|gb|EAP88288.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 136

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L + A   N  P +I+ I+EA  IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALTHLARQENQAPVQIATISEAENISQKFLESILLTLKKNGILSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L + A  I++++V++  E    +  C + +      DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLLKEAKDISMVNVMRVLEGPIAMVPCVSLNYYEKCDDCPDEHACSVHKLMIEVRDS 121

Query: 118 FFDVLTQYSIECLV 131
             D+    S+  L+
Sbjct: 122 TLDIFNNKSLADLI 135


>gi|111021140|ref|YP_704112.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820670|gb|ABG95954.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 165

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T + DY +R L+  A     P++   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1  MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA+ ITI DV++  E
Sbjct: 61 DGGYWLARPAEDITIADVIRTVE 83


>gi|226363500|ref|YP_002781282.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226241989|dbj|BAH52337.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 165

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T + DY +R L+  A     P++   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1  MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA+ ITI DV++  E
Sbjct: 61 DGGYWLARPAEDITIADVIRTVE 83


>gi|222100083|ref|YP_002534651.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga
          neapolitana DSM 4359]
 gi|221572474|gb|ACM23286.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga
          neapolitana DSM 4359]
          Length = 143

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          K   Y +R+LM  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 10 KHVRYALRLLMRLSLENR-PMSSSELAEKEHITRSFTLKVLHYLKRSGLVSSIKGKNGGF 68

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
           L R AD+I+ LD+++A E+   + +C
Sbjct: 69 VLARSADEISFLDIIRAFEKDLVIVDC 95


>gi|313610249|gb|EFR85521.1| putative transcriptional regulator [Listeria monocytogenes FSL
           F2-208]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASGISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|3659616|gb|AAC61685.1| CDG1D [Gluconacetobacter xylinus]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA    IS+  L K++  L   G++   RGR
Sbjct: 1   MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAATHRISQNHLVKVVNRLSSNGVILARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L     QI I D+++  E     +  C   +   C L  +C L  +  K++NAF 
Sbjct: 61  SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLQGLFAKSVNAFM 120

Query: 120 DVLTQYSIE 128
            VL + ++ 
Sbjct: 121 SVLDRITLH 129


>gi|295108297|emb|CBL22250.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
          A2-162]
          Length = 144

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG++ L+   +H +     I  IA    IS+ +L +++  L KAG+VE+ RG
Sbjct: 1  MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL RPA +I++ DV++  E S   A+C
Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQC 92


>gi|225165991|ref|ZP_03727744.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
           TAV2]
 gi|224799763|gb|EEG18239.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
           TAV2]
          Length = 200

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57
           M L+K+ +Y +R L+   I  +    + Q+AE      I   FL +I+Q L  +G+V + 
Sbjct: 1   MKLSKKGEYALRALIDLGIAAEVDRDLVQVAELADKELIPIKFLEQIMQELKTSGLVISQ 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKA 114
           RG+ GG RL RPA +I+I  V++  +       C    A  K  CP    CGL  ++   
Sbjct: 61  RGKFGGYRLSRPASEISIGSVIRFIDGPLAPIGCVSQTAYEKCSCPDETHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQYSIECLV 131
            NA   +L +YS+  +V
Sbjct: 121 RNAIAGILDRYSLADVV 137


>gi|317154436|ref|YP_004122484.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944687|gb|ADU63738.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 148

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+ +  A H    P RI  IAE   +S  +L K+++ L   G V + RG
Sbjct: 1   MRLTTRSRYGTRMALDIAQHCGPGPVRIQDIAERQGVSTKYLEKLIRRLKDGGYVVSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L RPA +I I ++V+  E    + EC    K DC     C  + +  +A  A +
Sbjct: 61  PRGGHTLARPASEILIGELVRVLEGDDSLVECRTGKK-DCQRRSVCLTSRLWVEAAEAMY 119

Query: 120 DVLTQYSI 127
             L  +++
Sbjct: 120 QRLNSFTL 127


>gi|217965274|ref|YP_002350952.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|217334544|gb|ACK40338.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|307570170|emb|CAR83349.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
          Length = 138

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATRQNVSPTYLSKVLTMLVKAGFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|297568160|ref|YP_003689504.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296924075|gb|ADH84885.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 130

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 48/83 (57%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY IR +   A H      I  IA    I   FL KILQ L +A IVE+ RG 
Sbjct: 1  MQITRATDYAIRCVYCLARHPGELWMIDDIAREMEIPNSFLAKILQKLARAQIVESQRGV 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
          RGG RL R  ++I++ DVV ATE
Sbjct: 61 RGGFRLARAPEEISLHDVVVATE 83


>gi|288940602|ref|YP_003442842.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum
           DSM 180]
 gi|288895974|gb|ADC61810.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum
           DSM 180]
          Length = 160

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH    P  ++ IA+   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHQGQGPIALADIAQRQGISLSYLEQLFAKLRKRGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + +V+ A +ES     C  +H  +C   G C    +     +  +
Sbjct: 61  PGGGYNLARKPVEIHVAEVIAAVDESVDTTRCGGAH--NCQNNGPCLTHDLWHDLSDRIY 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L Q  ++ LV  R S+ +
Sbjct: 119 DYLNQIDLQTLVDQRDSLGQ 138


>gi|87310930|ref|ZP_01093056.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
           3645]
 gi|87286445|gb|EAQ78353.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
           3645]
          Length = 138

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LM+ A  +D  N ++ +A+   IS   + K++  L K G V ++RG 
Sbjct: 1   MKLTTQTDYALRTLMFLATRSDRAN-VANVAQLFGISVHHVAKVVNSLAKYGYVRSIRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LNA 117
            GG+ L R   +I + +VV+  E S  + +C  +  I C +   C L  VL +A     A
Sbjct: 60  GGGIELARQPREIRLGEVVERFEGSTHLLDCIDTEDI-CAIQSFCKLKGVLAEAERVQRA 118

Query: 118 FFDVLT 123
           + D +T
Sbjct: 119 YLDSVT 124


>gi|313669379|ref|YP_004049806.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum
          kujiense DSM 16994]
 gi|313156576|gb|ADR35253.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum
          kujiense DSM 16994]
          Length = 137

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH +K  +Y IRVL Y   H++  + ++ + +   +   +L K++  LVK G+V   RGR
Sbjct: 1  MHFSKTAEYAIRVLSYLYRHHESSHSVNVLHQELVLPYKYLTKMVTDLVKKGLVNASRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG+ L + ADQI + D+++A  E      C 
Sbjct: 61 EGGISLAKNADQIRLRDILEAIGEPLEHERCI 92


>gi|304316708|ref|YP_003851853.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778210|gb|ADL68769.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 149

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++  + P  +  IAE   +SE +L +++  L KA +V+++RG
Sbjct: 1   MKLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   ++C       +C   G C    V+ K  +A 
Sbjct: 61  AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDMPFECSRSGGCPTKLVMEKIRDAI 120

Query: 119 FDVLTQYSIECLVRN 133
             V+   +++ +V +
Sbjct: 121 NKVIDSITLQDMVDD 135


>gi|193216387|ref|YP_001997586.1| BadM/Rrf2 family transcriptional regulator [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089864|gb|ACF15139.1| transcriptional regulator, BadM/Rrf2 family [Chloroherpeton
           thalassium ATCC 35110]
          Length = 132

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + +TK+ +YG+  + Y A+  N       +I+E   I    L K LQ L KAG++ +V+G
Sbjct: 2   LKVTKKFEYGLIAVRYIAMTSNGEVATAKEISERMGIPYELLAKTLQRLTKAGVITSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RP  QIT+ ++ +A E    + EC A+    C L  +C +   L      F 
Sbjct: 62  VKGGYKLSRPPKQITLGEIAEAIEGPLNLTECQATQD-TCHLYSTCAIKKSLVHIQQRFQ 120

Query: 120 DVLTQYSIE 128
            +  Q +++
Sbjct: 121 HIFDQATVD 129


>gi|253582245|ref|ZP_04859468.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835784|gb|EES64322.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 136

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+LMY  I+ D  NRI   ++I+E   I  LF  +IL+ L KA +V   
Sbjct: 1   MRLKNEIEYVFRILMYLTINGD--NRIIPSNEISEKEEIPHLFSLRILKKLEKADLVLIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116
           +G +GG +L + + +IT+ D +++ E S  + +C  S +  C L  G+CG+  +L+   +
Sbjct: 59  KGAKGGYKLKKDSREITLKDAIESIEGSICIKDCLESPE-SCTLRKGNCGVHRILKDIES 117

Query: 117 AFFDVLTQ 124
            F   L  
Sbjct: 118 QFISRLQN 125


>gi|77919328|ref|YP_357143.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77545411|gb|ABA88973.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 155

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +  + P +I  I+    IS  +L +I Q   KAGI+++ +G
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGNQPAQIKDISRRQDISPRYLEQIFQSFKKAGILKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKA-- 114
            +GG  L R  DQIT+  +V+A E    +  C       K  C + G C   +V  +A  
Sbjct: 61  PQGGYFLTRKPDQITVRQIVEAAEGDTLLVACACETPKGKGCCTMNGQCVTQTVWFEATE 120

Query: 115 -LNAFFDVLT 123
            LN F D LT
Sbjct: 121 HLNTFLDSLT 130


>gi|15613219|ref|NP_241522.1| hypothetical protein BH0656 [Bacillus halodurans C-125]
 gi|4512355|dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans]
 gi|10173270|dbj|BAB04375.1| BH0656 [Bacillus halodurans C-125]
          Length = 132

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     P++   + Q+AE   +S  +L KIL  L KAG++E+V
Sbjct: 1   MKYSKATNYALHTVLFLAAAT--PSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G  GG RL R  ++I+ LDV+ A E +  + +C  +H  +C
Sbjct: 59  SGANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNHGSEC 100


>gi|331000240|ref|ZP_08323924.1| HTH-type transcriptional regulator IscR [Parasutterella
           excrementihominis YIT 11859]
 gi|329572406|gb|EGG54059.1| HTH-type transcriptional regulator IscR [Parasutterella
           excrementihominis YIT 11859]
          Length = 151

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 80/147 (54%), Gaps = 10/147 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT +  + +  ++  A+H+  P     I+ I +   +S  +L +I   L +AG++E V
Sbjct: 1   MKLTTKGRFAVTAMLDIALHD--PEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG RL +PADQIT++D+++A ++    A C  +  + C   G C +T  L ++LN 
Sbjct: 59  RGPAGGYRLAKPADQITVIDILEAVDDPLEKASCDKNRAV-CDGEGEC-ITFDLWESLN- 115

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
             + + ++     ++N +  KK+ + G
Sbjct: 116 --EEIRKFLKGISLKNLADKKKLKDQG 140


>gi|83592507|ref|YP_426259.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575421|gb|ABC21972.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 148

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ L+Y A H D  P  I++IAE+  IS+ FL  IL  L  AG+V + +GR 
Sbjct: 2   LSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRNAGLVGSKKGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC---GLTSVLRKA 114
           GG  L +P DQI I  V++  +       C +        DC  V  C   GL   +R A
Sbjct: 62  GGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPCDDCGSVQECAIRGLMLDVRDA 121

Query: 115 LNAFFDVLT 123
           + A  D  T
Sbjct: 122 MAAILDSTT 130


>gi|253996434|ref|YP_003048498.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
           JLW8]
 gi|253983113|gb|ACT47971.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
           JLW8]
          Length = 146

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +TK TD  +RVLMY      D    I++IA+   +    L K++  L K   V   RG
Sbjct: 1   MQITKFTDLSLRVLMYLTQEVGDSMVTINEIAQQFDVPRNHLIKVVARLNKLKWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL     ++ + +V++  E    +  C    +  C L G C L  +L   L +F+
Sbjct: 61  RSGGLRLGIQPSELKLGNVLRELENKTSLINC---SEPPCVLSGQCNLKEILDHGLQSFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + + +Y+++ +V  ++ 
Sbjct: 118 EEMNKYTLQSIVDQKTQ 134


>gi|160932651|ref|ZP_02080041.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
 gi|156868610|gb|EDO61982.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
          Length = 145

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +RV++  A   +    P  + +IAE   ISE +L  I++ LVK G+V  +
Sbjct: 1   MMVSTKGRYALRVMVELAARGLEEFVP--LKEIAEHQEISEKYLEAIMKSLVKEGLVTGL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKA 114
           RG+ GG RL +P  Q T+  ++K TE S     C   +   CP    C    +   L + 
Sbjct: 59  RGKGGGYRLSKPPAQYTVGSILKVTEGSLAPVACLGQNAAPCPRAERCATYPMWKRLSQL 118

Query: 115 LNAFFDVLT 123
           ++ FF+ +T
Sbjct: 119 IDDFFEGIT 127


>gi|145223660|ref|YP_001134338.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315443986|ref|YP_004076865.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Mycobacterium sp. Spyr1]
 gi|145216146|gb|ABP45550.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
           PYR-GCK]
 gi|315262289|gb|ADT99030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
           Spyr1]
          Length = 148

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  +       R++  +IA +   SE  + K +  LV+ G+VE  R
Sbjct: 1   MQLTRFTDLGLRAMMLLSAGEFADKRVTTGRIAASAGASENHIAKAVSRLVELGLVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C    +  CPL+  C L   L +A  AF
Sbjct: 61  GRIGGLSLTEAGRTASVGWLVRELEGDREVVNC--QGETACPLIAGCRLRHALARAKEAF 118

Query: 119 FDVLTQYSIECLVRN 133
           +  L  Y++  L R+
Sbjct: 119 YAELDNYTVSDLARS 133


>gi|260887774|ref|ZP_05899037.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           sputigena ATCC 35185]
 gi|330838672|ref|YP_004413252.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
           ATCC 35185]
 gi|260862450|gb|EEX76950.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           sputigena ATCC 35185]
 gi|329746436|gb|AEB99792.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
           ATCC 35185]
          Length = 143

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R++M  A++  + P RI  IA    ISE +L +I+  L KAG V++ RG
Sbjct: 1   MKISTRGRYALRLMMDIAMNGQNEPVRIKDIARRQEISEKYLEQIVSVLNKAGFVKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R   + T   ++   E S     C    + DCP    C    + +K   A  
Sbjct: 61  PQGGYRLMRAPQEYTAGSILCLIEGSLAPVACMDMEENDCPRHERCATLFLWQKLHEAMK 120

Query: 120 DVLTQYSIECLV 131
           DV+   S+  L+
Sbjct: 121 DVIENVSLSDLI 132


>gi|157149110|ref|YP_001456429.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
 gi|157086315|gb|ABV15993.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
          Length = 167

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  LM C + +    R   + +IA+   +   +L KI   L KAG+V ++ G+ GG 
Sbjct: 9   EYGIHSLM-CMVDSKGDARDMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115
           +L RPA+ IT+LDVV A +    + EC         F          G CG+ SV+  A 
Sbjct: 68  QLARPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPAWACEGICGVRSVMDMAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L Q++I  L R 
Sbjct: 128 QRMEEALGQHTILDLARK 145


>gi|163802753|ref|ZP_02196643.1| hypothetical protein 1103602000569_AND4_12699 [Vibrio sp. AND4]
 gi|159173460|gb|EDP58282.1| hypothetical protein AND4_12699 [Vibrio sp. AND4]
          Length = 141

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+   E   +  C       C +  +C L   L +A  AF 
Sbjct: 61  KNGGIRLLKAPQEITVGGVVRDL-EPLDLVNCSVEF---CHITPACRLKEKLAQAKMAFM 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +IE L+R+ S +
Sbjct: 117 AELDGCTIEELLRDNSEL 134


>gi|319942818|ref|ZP_08017119.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803585|gb|EFW00546.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
          Length = 161

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT +  + +  ++  A+    +D P  I+Q+AE   IS  +L +I   L +AG+VE+ 
Sbjct: 1   MKLTTKGRFAVTAMVDIAMRARESDAPVPIAQVAERQKISLAYLEQIFCRLRRAGLVEST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L  PA QITI  +V A +E+    +C         L G+  LT  L + LN+
Sbjct: 61  RGPAGGYKLSEPASQITIDRIVLAVDENMDTTQCRGEGTC---LGGAACLTHHLWEELNS 117

Query: 118 FFD-VLTQYSIECLV 131
             +  L   S+ECL+
Sbjct: 118 VIESFLASRSLECLI 132


>gi|254519288|ref|ZP_05131344.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
 gi|226913037|gb|EEH98238.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
          Length = 150

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  D P  I  I++   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAMHYGDAPVSIKTISQRQNISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L      IT+ DV+   E    +AEC      +C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLNYAPKDITVADVMNVLEGPVEIAECIEG--TECDNIDFCATRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V+   +++ +V +   +K
Sbjct: 119 EVMKNITLQDIVDDYVRMK 137


>gi|194291062|ref|YP_002006969.1| hth transcriptional regulator; upf0074 [Cupriavidus taiwanensis LMG
           19424]
 gi|193224897|emb|CAQ70908.1| putative HTH transcriptional regulator; UPF0074 [Cupriavidus
           taiwanensis LMG 19424]
          Length = 150

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A  +   P  I+++ +   IS   L K+   L K G V   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++TI  +++  E    V +C       C L G+C L   L  A  AF+
Sbjct: 61  RHGGLQLGPGAERLTIGTILRELEGHRPVIDC---DNPPCALHGNCHLKRALDVAEQAFY 117

Query: 120 ---------DVLTQYSIECLVR 132
                    DV   ++ E ++R
Sbjct: 118 RALDDVTLADVSGSHTAESIIR 139


>gi|241668595|ref|ZP_04756173.1| putative transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 140

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 1   MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK   E   + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 61  FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119

Query: 121 VLTQY 125
            L+ Y
Sbjct: 120 RLSDY 124


>gi|303257496|ref|ZP_07343508.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderiales bacterium 1_1_47]
 gi|302859466|gb|EFL82545.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderiales bacterium 1_1_47]
          Length = 151

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT +  + +  ++  A+H+  P     I+ I +   +S  +L +I   L +AG++E V
Sbjct: 1   MKLTTKGRFAVTAMLDIALHD--PEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           RG  GG RL +PADQIT++D+++A ++    A C  +  + C   G C +T  L ++LN
Sbjct: 59  RGPAGGYRLAKPADQITVIDILEAVDDPLEKASCDKNRAV-CDGEGEC-ITFDLWESLN 115


>gi|220916472|ref|YP_002491776.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954326|gb|ACL64710.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 159

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG
Sbjct: 5   LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64

Query: 60  RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R PAD I+ LDV+++ E    +  C       C    +C + SV R      
Sbjct: 65  PHGGYALARMPAD-ISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERM 122

Query: 119 FDVLTQYSIECL 130
            DV  Q  +  L
Sbjct: 123 LDVYRQAKLSEL 134


>gi|303238938|ref|ZP_07325469.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302593571|gb|EFL63288.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 150

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+  ++  AIH+   +  +  I+E C +SE ++ +I   L +AGIV+++RG
Sbjct: 1   MKISTKGRYGLEAIVDLAIHSAEGHVNLKSISERCGMSEAYILQIFLILRRAGIVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +   +IT+ DV+ A E       C  +  +  C   GSC         ++A 
Sbjct: 61  AQGGYVLAKEPSEITVGDVLTALEGPLAPVACVVTEAEHTCERYGSCATRGFWESIMSAL 120

Query: 119 FDVLTQYSIECLVR--NRSSIKK 139
            DV    +I  LV   N S+ + 
Sbjct: 121 NDVANSITIADLVECYNESAFQS 143


>gi|302536831|ref|ZP_07289173.1| transcriptional regulator [Streptomyces sp. C]
 gi|302445726|gb|EFL17542.1| transcriptional regulator [Streptomyces sp. C]
          Length = 152

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ + D P    ++A    +      K++  L   G+VE  RG
Sbjct: 4   MRLTRFTDLALRVLMRLAVEDTDLPT-TREVAATMEVPYTHTAKVVARLQHLGLVEARRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  VV+  E +  V +C  +    CPL G+C L   LR+A  AFF
Sbjct: 63  RGGGLALTAAGRTASVGGVVRELEGAGDVVDCDGASP--CPLRGACVLRGALRRAQEAFF 120

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 121 AALDPLTVNELV 132


>gi|116872023|ref|YP_848804.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740901|emb|CAK20021.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 138

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKAG VE+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+  A  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESKP---HCLIGEVMNNAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|226326637|ref|ZP_03802155.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
 gi|225204858|gb|EEG87212.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
          Length = 126

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+++ +   +S   + KI+  L   G VE +RG+ GG+RL +PA  I + +VV+A  E  
Sbjct: 12  ITEVTQVYGVSRNHMVKIINQLSHLGFVEAIRGKNGGIRLGKPATDIIVGEVVRAL-EPL 70

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            +  C A     C +  +C L  VL +A+  F   L ++++  LV N SS+ K+ 
Sbjct: 71  SLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSSLYKLL 122


>gi|126347965|emb|CAJ89685.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 172

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + LTK TD  +R +M  A+    D P    ++AEA  +      K +  L   G+VE  R
Sbjct: 25  VRLTKFTDLALRSVMRLAVVRDGDDPLTTREVAEAVGVPYTHAAKAITRLRHLGVVEARR 84

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L  P  + ++  +V+  E    V  C       CPL G+C L   LR+A  AF
Sbjct: 85  GRGGGLTLTDPGRRASVGRLVRELEGDGEVVACEGDSP--CPLRGACRLRGALREAQEAF 142

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  LV
Sbjct: 143 YAALDPLTVTDLV 155


>gi|85713395|ref|ZP_01044399.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
 gi|85692781|gb|EAQ30775.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
          Length = 150

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K TDYG+RVL+Y  A   D    I+ ++    +S+  L K++  L K G+++T RG
Sbjct: 1   MQLKKYTDYGLRVLIYLAAAEPDERATINDLSSVFSVSKNHLNKVVHHLGKLGLIKTWRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L   A    +  V++  E      +C       C +   C L  ++      F+
Sbjct: 61  KGGGFSLAVDARHTRLDTVIRQLEGDEDWIDCLNP---TCKIYSVCDLKGIIHAGKEQFY 117

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L +Y+I  LV     IK
Sbjct: 118 SYLAKYTIASLVERPEEIK 136


>gi|153004144|ref|YP_001378469.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027717|gb|ABS25485.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 158

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ DYG+R ++Y A I  +      +IA    + E FL KIL+ LV   +V + RG
Sbjct: 5   LRISRKIDYGLRAMIYLASIPQESVVPFREIARQMDVPEDFLAKILKTLVDQSLVRSTRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I+ LDV++A E    +  C       C    +C + SV R+      
Sbjct: 65  PHGGYALARTPSEISFLDVIEAVEGPVALNVCLDGEDA-CGHSTACTMVSVWRQGQERML 123

Query: 120 DVLTQYSIECL 130
           DV  Q  +  L
Sbjct: 124 DVYRQAKLNEL 134


>gi|302392704|ref|YP_003828524.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
 gi|302204781|gb|ADL13459.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
           arabaticum DSM 5501]
          Length = 149

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+   + P  + +IAE   IS+ +L +++  L    +VE+VRG
Sbjct: 1   MQLSTKGRYGVRAMFDLALQQKEGPIPLKEIAERQKISDNYLEQLIAVLKNNRLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P ++I+I D+++A E    +A+C       C    +C +  + +K      
Sbjct: 61  AYGGYLLAKPPEEISIGDIIRALEGPIDLADCVGGRS--CEFEDNCIVELIWQKVKKEID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D+L   ++E L++  ++ ++
Sbjct: 119 DILDSITLEDLLQEAANAQQ 138


>gi|210621787|ref|ZP_03292816.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
 gi|210154551|gb|EEA85557.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
          Length = 148

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 11/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ +DY IR++   A+ ++    I  I E   + E F +KI++ L K+ IVE  RG 
Sbjct: 1   MLFTRESDYAIRIVR--ALKDEEKLTIKTICERELLPEAFAYKIIKKLAKSEIVEIKRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +  +++T+ DV+ A +  F V EC  S    C   GS G+  V ++       
Sbjct: 59  NGGYSLKKDLNELTLYDVIIAVDPDFAVMECIHSF---CNRNGSNGMCKVHKEL------ 109

Query: 121 VLTQYSIECLVRNRS 135
           +  Q  +E L++ RS
Sbjct: 110 IYIQNQVEMLLKRRS 124


>gi|78189265|ref|YP_379603.1| hypothetical protein Cag_1300 [Chlorobium chlorochromatii CaD3]
 gi|78171464|gb|ABB28560.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           chlorochromatii CaD3]
          Length = 186

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           + ++++ +YG+  + Y A      NR+    +++E    S+ FL K +Q L KAGI ++V
Sbjct: 2   LQVSRKFEYGLHAITYLATKGQ--NRVVTVKELSEELGFSQEFLSKAMQSLKKAGITKSV 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G RGG RL +P  +IT+ D+  ATE    + +C  S +  C +  +C   + +    + 
Sbjct: 60  QGLRGGFRLIKPITEITVADIAVATEGEPHLVQCNISAE-RCHVYATCQHKAFMNTLQHK 118

Query: 118 FFDVLTQYSIECLVRN 133
             ++L   +I  L+  
Sbjct: 119 IHELLATTTIVALLEQ 134


>gi|325265021|ref|ZP_08131748.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324029711|gb|EGB90999.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 152

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A H++  P  I+ I++   ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQHSEADPVSITSISDRQGISERYLEQLMSMLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSC 105
             GG  L +  ++I++ DV++A E S    EC   H  + C    SC
Sbjct: 61  AGGGYVLAKDLEEISVGDVLRALEGSLEPVECSGLHPEEGCKAADSC 107


>gi|197121676|ref|YP_002133627.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Anaeromyxobacter sp. K]
 gi|196171525|gb|ACG72498.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           K]
          Length = 160

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG
Sbjct: 5   LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64

Query: 60  RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R PAD I+ LDV+++ E    +  C       C    +C + SV R      
Sbjct: 65  PHGGYALARMPAD-ISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERM 122

Query: 119 FDVLTQYSIECL 130
            DV  Q  +  L
Sbjct: 123 LDVYRQAKLSEL 134


>gi|254877128|ref|ZP_05249838.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843149|gb|EET21563.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 174

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 35  MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 94

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK   E   + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 95  FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 153

Query: 121 VLTQY 125
            L+ Y
Sbjct: 154 RLSDY 158


>gi|302336476|ref|YP_003801683.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
 gi|301320316|gb|ADK68803.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
          Length = 163

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L            +   +E   I   F   I   LV+AGI+E+ RG 
Sbjct: 1   MDISRKTDYALRMLSELVRSEGGIISVRAASEKDNIPYSFARSIQHDLVRAGIIESTRGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVL---RKAL 115
           RGG+RL     + T+  VV+A +   +++ C     H+  CP    C    +     + L
Sbjct: 61  RGGMRLAVDPRRTTVRQVVEAIQGPIYISSCDTVGGHEGPCPFRSECHYNPIWCEAERIL 120

Query: 116 NAFFDVLTQYSIEC 129
             +FD +T Y + C
Sbjct: 121 RDYFDSVTLYQVVC 134


>gi|87198220|ref|YP_495477.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133901|gb|ABD24643.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 146

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY +  +   A H     R+S  Q+A+   +    + K++  L  AG++++VR
Sbjct: 1   MRLSSMADYAVVTMCAAARHCGQ-QRVSAQQLADETGLPAPTVQKLVSKLSSAGLLKSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVL 111
           G RGG++L RPA  IT+ D+V+A E    +A C    + DC L  +C        + + L
Sbjct: 60  GARGGLKLARPAAAITLADIVEAVEGPIALAPCSEHGRHDCTLESACTVRPHWPAVDAAL 119

Query: 112 RKALNAFFDVLTQYS 126
           R AL      LTQ S
Sbjct: 120 RGALAGIP--LTQLS 132


>gi|325286870|ref|YP_004262660.1| BadM/Rrf2 family transcriptional regulator [Cellulophaga lytica DSM
           7489]
 gi|324322324|gb|ADY29789.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga lytica
           DSM 7489]
          Length = 135

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P  I +IA+   IS+ FL  IL  L + G++ + +G+ 
Sbjct: 2   LSKKTKYGLKALTYLAQKEDRNPVPIGEIAQQNNISQKFLESILLMLRRTGVLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I + DV++  E    +  C    F     DCP  G+C +  ++ K  ++
Sbjct: 62  GGYYLIKEPSEILMTDVIRVLEGPIAMVPCVSLNFYEKCDDCPDEGTCSVHKLMLKVRDS 121

Query: 118 FFDVLTQYSIECLV 131
             ++    ++  L+
Sbjct: 122 ALEIYKNTTLSNLI 135


>gi|78224182|ref|YP_385929.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78195437|gb|ABB33204.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 154

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R +   A ++ + P+++  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MKLSTKSRYGLRAIFDIAYNSGNLPSQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSC 105
            +GG  L +  ++IT+ DV+ ATE    + EC      K++C   G+C
Sbjct: 61  PQGGYCLAKKPEEITVADVLLATERDMNLVECTNKRKKKVECGFDGTC 108


>gi|326626056|gb|EGE32401.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 117

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ I I DVV+  E   
Sbjct: 4   ISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLS 63

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 64  LV-NCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 114


>gi|260061024|ref|YP_003194104.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
           HTCC2501]
 gi|88785156|gb|EAR16325.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
           HTCC2501]
          Length = 143

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K   Y I+ ++Y  +H+  P +I    + E   +SE +L KILQ L +  I+ +++GR
Sbjct: 2   ISKTAKYAIKAVIYLGLHSSEPKKILTRDMYEQIHVSESYLAKILQVLSRHNIISSIKGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L       T++D+V+  +   +V  C      +C     C L  ++ K    F  
Sbjct: 62  NGGFYLSEENKNHTLMDIVRVVDGGQYVESCVLGIS-NCNSENPCALHDLVGKGKTEFNR 120

Query: 121 VLTQYSIECLV 131
           VL + +I+ L+
Sbjct: 121 VLEEVTIKKLI 131


>gi|302874700|ref|YP_003843333.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
 gi|307690687|ref|ZP_07633133.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
           cellulovorans 743B]
 gi|302577557|gb|ADL51569.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
          Length = 140

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMFDLAVHYGSEPISIKSISDRQGISENYLEQLFSTLRKAELIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D+    E    V++C   +   C  +GSCG   +  K  N+F 
Sbjct: 61  AQGGYMLNKLPAEITVADIFDVLEGPIEVSDCIDENC--CSKIGSCGTRGLWIKIKNSFD 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +V + +  K
Sbjct: 119 EVTQSVTLQDMVDDYNKNK 137


>gi|226356822|ref|YP_002786562.1| Rff2 family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226318812|gb|ACO46808.1| putative transcriptional regulator, Rff2 family [Deinococcus
           deserti VCD115]
          Length = 151

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+     +     +  ++E   IS+ +L +I   L +AG ++++RG 
Sbjct: 1   MWVSTKAQYGLRALIEIGRRDGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA  I+  DVV A E S     C       C     CG  ++  +   A  D
Sbjct: 61  HGGYRLSRPAADISAYDVVTAMEGSLAPVSCVEDDHT-CDHQNVCGTQNLWHRVDAALKD 119

Query: 121 VLTQYSIECLV 131
           VL   ++  L+
Sbjct: 120 VLGSTTLADLI 130


>gi|54296620|ref|YP_122989.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
 gi|53750405|emb|CAH11799.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
          Length = 153

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG  V++Y A H+        IA    ++   + KIL+ L  AG++ +VRG 
Sbjct: 2   LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA +I++  V+ A EE     EC +    DC L G C +    R   +A   
Sbjct: 62  SGGYRLQRPAAEISVSQVIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120

Query: 121 VLTQYSIECLVR 132
            L   S+E L +
Sbjct: 121 ALDSVSLEALAK 132


>gi|260438134|ref|ZP_05791950.1| iron-sulfur cluster assembly transcription factor IscR
           [Butyrivibrio crossotus DSM 2876]
 gi|292809459|gb|EFF68664.1| iron-sulfur cluster assembly transcription factor IscR
           [Butyrivibrio crossotus DSM 2876]
          Length = 144

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++ ND P  I +IA    ISE +L +I+  L  AG V ++RG
Sbjct: 1   MKVSTKGRYALRLMIDIAVNSNDKPVSIKEIARRQGISEKYLEQIISILNSAGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   + T+  +++ TE S     C   + + C  V +C    V R+  +A  
Sbjct: 61  AQGGYVLRKEPSEYTVGMILRLTEGSLAPVACIEDNVVQCDRVENCATIEVWRRLNDAIN 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+   ++  LV  +++ K+ +
Sbjct: 121 GVVDNITLADLVEWQNNNKENY 142


>gi|261415306|ref|YP_003248989.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371762|gb|ACX74507.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327324|gb|ADL26525.1| transcriptional regulator, Rrf2 family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 146

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  Y IRV++  A + +   + +  +AE   +SE +L  IL  LVK  ++E  RG
Sbjct: 1   MRESTKGRYAIRVIIDMAENGESEFHPLHNLAERQGLSEKYLEAILGVLVKNNVLEGARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +PA ++T+ +++   E S    EC A  K  C     C    + +       
Sbjct: 61  KGGGYKLAKPAAELTVWEILSVIETSISPVECVADGKNGCDRADVCPTLPMWKDLAKIIK 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D  T  +IE L R    I +
Sbjct: 121 DYFTGITIEQLARKAPKIAR 140


>gi|157147850|ref|YP_001455169.1| transcriptional repressor NsrR [Citrobacter koseri ATCC BAA-895]
 gi|157085055|gb|ABV14733.1| hypothetical protein CKO_03654 [Citrobacter koseri ATCC BAA-895]
          Length = 125

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ E   +S   + KI+  L +AG V  +RG+ GG+RL +PA+ I I DVV+  E   
Sbjct: 12  ISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPANVIVIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 122


>gi|95930591|ref|ZP_01313326.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133426|gb|EAT15090.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
          Length = 151

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +T+ T+Y IR ++Y +     P  I     I +   ++  FL KI QP+VKAGIV + 
Sbjct: 1   MVITRATEYAIRAILYMSKFP--PGEIVLKKDICQTQNVTPAFLTKIFQPMVKAGIVGSQ 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L    + IT+ DV KA E+   + +C       C     C +    ++   +
Sbjct: 59  RGVGGGFYLRHKPEDITVYDVFKAQEDPLHINKCLGDENC-CERDNYCPVHGAWKEVRES 117

Query: 118 FFDVLTQYSIECLV-RNRSSIKKIF 141
               L++Y+   L     +++KK+ 
Sbjct: 118 MIQQLSEYNFARLAEEEEANLKKLM 142


>gi|242277828|ref|YP_002989957.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242120722|gb|ACS78418.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 141

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y  R+L+  A+  +D P + + ++E+  I+  F+ +IL+PL KAG++ +VRG
Sbjct: 1   MKLSARARYATRLLLDLALRQSDTPRKTTLLSESTGITVQFIEQILRPLKKAGLIVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +    I+I ++V+  E    + +C A   I C    +C    V  ++     
Sbjct: 61  ATGGHILDKDPSTISIGEIVRIMEGGINLTDCVADESI-CARSATCKTRKVWVRSSKVLE 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   SI  L+ N  S
Sbjct: 120 EELDSISIADLMDNPDS 136


>gi|38637899|ref|NP_942873.1| hypothetical protein PHG235 [Ralstonia eutropha H16]
 gi|32527237|gb|AAP85987.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 148

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT  TDY +R+L+Y A H   P R+    +IA+A  IS   L K+   L + G + TV
Sbjct: 1  MRLTTMTDYALRLLIYVARH---PERMCTNDEIAQAYGISRAHLVKVTHKLSRQGWIATV 57

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESF 86
          RGR GG++L      I + DVV++ E  F
Sbjct: 58 RGRGGGMQLSSGPGSINLGDVVRSVEPDF 86


>gi|209967102|ref|YP_002300017.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209960568|gb|ACJ01205.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 156

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L++R  Y +R  ++ A  ++     RI+ IA A  I   FL  IL  L KAG++++VRGR
Sbjct: 8   LSQRCKYALRAAVHLAGLSEQEGCARIADIAAAENIPHKFLEAILLDLRKAGLLKSVRGR 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116
            GG RL +P + +++ D+++  E +     C + ++     DC     C +   + KA +
Sbjct: 68  DGGYRLAKPPEHVSMGDIIRVVEGTIAPIRCASRNRFEPCEDCGNPDECVIRWAMVKARD 127

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A  +VL + ++    R R ++
Sbjct: 128 AMAEVLDRCTLAEAARRRRTL 148


>gi|258541650|ref|YP_003187083.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632728|dbj|BAH98703.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635785|dbj|BAI01754.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638840|dbj|BAI04802.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641894|dbj|BAI07849.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644949|dbj|BAI10897.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648004|dbj|BAI13945.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651057|dbj|BAI16991.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654048|dbj|BAI19975.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-12]
          Length = 169

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H +    I +IA    ISE  L KI+  L + G ++T+RGR
Sbjct: 13  MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFIDTLRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115
            GG+ L R    I I DVV+ TE+   +  C +         +C L  +C L   L +AL
Sbjct: 73  GGGLMLGRAPQDIRIGDVVRHTEDDMALVSCMSPSPGVPGSTECLLSRACHLRGALGEAL 132

Query: 116 NAFFDVLTQYSI 127
           +AF  VL   ++
Sbjct: 133 DAFMAVLDSRTL 144


>gi|217967652|ref|YP_002353158.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
           DSM 6724]
 gi|217336751|gb|ACK42544.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum
           DSM 6724]
          Length = 138

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  R+ YG+R L+Y A +    N +S  +IAEA  I   +L +I++ L + G V    
Sbjct: 1   MKLPTRSRYGLRALIYIAKNQKEENPVSVRKIAEAEEIPLRYLERIMRILSQKGYVRAEV 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + I ILDVV+A E    + +C   H I C  +  C    +  +   + 
Sbjct: 61  GAEGGYYLSMLPENIKILDVVEALEGRINLVDCL--HGIKCKRMAYCPTRPLWMEMTKSL 118

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            + L +Y++   +R    IK
Sbjct: 119 KETLAKYTLADFLREEEKIK 138


>gi|262197356|ref|YP_003268565.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262080703|gb|ACY16672.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 183

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVET 56
           M L+ +T YG+R +   A H  D P   +Q   IA    I   +L +I Q L +AG+VE+
Sbjct: 1   MRLSTKTRYGVRAIFDIAYHGQDQPGVAAQAKDIARREDIPLRYLEQIFQDLKRAGLVES 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCP 100
            RG RGG  L R A++IT+ DVV+A +   E  FV E  A +    P
Sbjct: 61  KRGPRGGYSLKRSAEEITLGDVVRALQGPIEEMFVVEDTAQNSSARP 107


>gi|89895173|ref|YP_518660.1| hypothetical protein DSY2427 [Desulfitobacterium hafniense Y51]
 gi|219669600|ref|YP_002460035.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89334621|dbj|BAE84216.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539860|gb|ACL21599.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 146

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 2/146 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  ++  A+++ + P  +  IA+   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQLISGLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L + A++I I D+++  E      EC A+   + C     C   S+  K  +  
Sbjct: 61  AQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQKSDYCVTRSIREKVRDPI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
            DVL   S+  LVR+  ++  I + G
Sbjct: 121 EDVLDSISLADLVRDPQTMCTIADPG 146


>gi|291458397|ref|ZP_06597787.1| iron-sulfur cluster assembly transcription factor IscR
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418930|gb|EFE92649.1| iron-sulfur cluster assembly transcription factor IscR
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 134

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  L+  A ++D   P  I +I+E   IS  +L +I+  +VK G + +VR
Sbjct: 1   MMISTKGRYALTTLIDIAENSDGRTPVSIKEISERRGISLKYLEQIIALMVKGGFLRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG    RPA +I + D++ A E +    EC    K  C    +C    + R+   A 
Sbjct: 61  GARGGYLFTRPASEIAVGDILNAAEGTLAPVECLMDGK-SCEKSATCPTFPLYREIDEAI 119

Query: 119 FDVLTQYSIECLVRN 133
           + V+ +Y +  L++ 
Sbjct: 120 YSVVNRYHLSDLLKK 134


>gi|161505130|ref|YP_001572242.1| transcriptional repressor NsrR [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866477|gb|ABX23100.1| hypothetical protein SARI_03264 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 125

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ I I DVV+  E   
Sbjct: 12  ISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVRSFLKELDNYTLADLVEENQPLYKLL 122


>gi|289208504|ref|YP_003460570.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288944135|gb|ADC71834.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 159

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 14/146 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  AIH+   P  ++ I++   IS  +L ++   L KA +VE VRG
Sbjct: 1   MKLSTKGRYAVTAMMDLAIHDRVGPVTLADISQCQGISLSYLEQLFAKLRKADLVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL + ADQI+I +++ A +ES  V  C   HK DC     C    L   L + L 
Sbjct: 61  PGGGYRLAKRADQISIANIITAVDESVDVTRC-KGHK-DCQDGERCLTHELWDDLSQQLY 118

Query: 117 AFFD--VLTQYSIECLVRNRSSIKKI 140
            F D   L Q++      NR  ++K+
Sbjct: 119 DFLDGITLAQFA------NRPEVQKV 138


>gi|153835424|ref|ZP_01988091.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
           HY01]
 gi|156972466|ref|YP_001443373.1| transcriptional repressor NsrR [Vibrio harveyi ATCC BAA-1116]
 gi|189030890|sp|A7MX86|NSRR_VIBHB RecName: Full=HTH-type transcriptional repressor nsrR
 gi|148868029|gb|EDL67214.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
           HY01]
 gi|156524060|gb|ABU69146.1| hypothetical protein VIBHAR_00086 [Vibrio harveyi ATCC BAA-1116]
          Length = 141

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+  E    V  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLMKAPQEITVGGVVRDLEPLDLV-NCSVEF---CHITPACRLKEKLAKAKLAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +IE L+ + S +
Sbjct: 117 AELDDCTIEELLSDNSEL 134


>gi|172057254|ref|YP_001813714.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989775|gb|ACB60697.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 130

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---CISELFLFKILQPLVKAGIVETV 57
           M +T+ TDY IRVL++  +H   P R+ QI E      IS+  L KI+  L + G++ + 
Sbjct: 1   MKMTRSTDYAIRVLLFTTLH---PTRLVQIQEVADYYDISKNHLMKIVHALSRFGLITSY 57

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +GR GG +L +   +IT+ ++V+  E+  ++ E F     D  L     +      A   
Sbjct: 58  QGRNGGFKLAKDPSEITLGEIVQLFEKVSYL-ESFPEIHEDENL---ENMKEAFDYAFLQ 113

Query: 118 FFDVLTQYSIECLVR 132
           F + L  YS++ L+ 
Sbjct: 114 FSEALKAYSLQDLIH 128


>gi|300723225|ref|YP_003712525.1| hypothetical protein XNC1_2289 [Xenorhabdus nematophila ATCC 19061]
 gi|297629742|emb|CBJ90348.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +YGI  L++   + D      ++AE   IS  FL KIL  L KAGIV +  G R
Sbjct: 3   YITVSVEYGIHCLLWFVDNPDRSLSSRELAELQGISPSFLAKILPRLEKAGIVNSNEGIR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTSVL 111
           GG RL  PA++IT L ++ A E    + EC            ++  D  +  +C +  V+
Sbjct: 63  GGYRLALPAEKITFLSIIDAIEGYKPLFECQEVRQRCAIFENTNPPDWAISDTCSVHKVI 122

Query: 112 RKALNAFFDVLTQYSI 127
            +A  A  DVL   ++
Sbjct: 123 LQAEKAMRDVLANQTL 138


>gi|167628038|ref|YP_001678538.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598039|gb|ABZ88037.1| putative transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 140

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 1   MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK   E   + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 61  FGGVSISQATYNIKLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119

Query: 121 VLTQY 125
            L  Y
Sbjct: 120 RLNDY 124


>gi|21673360|ref|NP_661425.1| hypothetical protein CT0525 [Chlorobium tepidum TLS]
 gi|21646455|gb|AAM71767.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 136

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           + ++++ +YG+  + Y A+    P ++    ++A     S++FL K +Q L KAGI  +V
Sbjct: 2   LQVSRKFEYGLHAVTYLAMKG--PEQVVTVKELAAEIGFSQVFLAKAMQSLNKAGITRSV 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G +GG  L RPA+QIT+ D+  A E    +  C +     C +  +C     +      
Sbjct: 60  QGVKGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCQCEIESNCTHKGYMLNLQKR 118

Query: 118 FFDVLTQYSIECLVR 132
            +D+L + ++  L+ 
Sbjct: 119 IYDLLAETTVAVLLE 133


>gi|153810455|ref|ZP_01963123.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
 gi|149833634|gb|EDM88715.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
          Length = 144

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG++ L+   +H +     I  IA    IS+ +L +++  L KAG+V++ RG
Sbjct: 1  MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVDSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL RPA +I++ DV++  E S   A+C
Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQC 92


>gi|291523269|emb|CBK81562.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
           GD/7]
          Length = 143

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y +R+++  A  ND+  P RI  IA    IS  +L +I+  L KAG V+++R
Sbjct: 1   MKISTRGRYALRMMLDIAT-NDHGEPVRIKDIAARQDISVKYLEQIVSVLTKAGYVKSIR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG RL R     T+  +++ TE       C   +  DCP +  C    + ++   A 
Sbjct: 60  GPQGGYRLARLPKDYTVGMILRLTEGDLSPVSC-TDNNYDCPKMQDCVTIRIWKELDEAI 118

Query: 119 FDVLTQYSIECLV 131
             V+ +Y++E L+
Sbjct: 119 NSVIDKYTLEDLL 131


>gi|52840837|ref|YP_094636.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148360750|ref|YP_001251957.1| rrf2 family transporter protein [Legionella pneumophila str. Corby]
 gi|52627948|gb|AAU26689.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148282523|gb|ABQ56611.1| rrf2 family protein [Legionella pneumophila str. Corby]
          Length = 153

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG  V++Y A H+        IA    ++   + KIL+ L  AG++ +VRG 
Sbjct: 2   LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA +I++  ++ A EE     EC +    DC L G C +    R   +A   
Sbjct: 62  SGGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120

Query: 121 VLTQYSIECLVR 132
            L   S+E L +
Sbjct: 121 ALDSVSLEALAK 132


>gi|257792249|ref|YP_003182855.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|317490177|ref|ZP_07948665.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325833540|ref|ZP_08165989.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
 gi|257476146|gb|ACV56466.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|316910671|gb|EFV32292.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325485464|gb|EGC87933.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
          Length = 136

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y +R+++  A   +    ++  Q AE   +S  +L ++   LVKAG++++VR
Sbjct: 1   MMISTRGRYALRLMIDIARQGEAGALVTMRQAAEREDLSVKYLEQLGGALVKAGVLKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RPADQIT  DV++ATE S     C       CP    C   +  R    A 
Sbjct: 61  GVSGGYLLARPADQITAGDVLRATEGSCAPVSCLEDGAEACPRRDQCVAINFWRGLDQAI 120

Query: 119 FDVLTQYSIECLVR 132
            D +   ++  LV+
Sbjct: 121 EDYVDNVTLADLVQ 134


>gi|52785847|ref|YP_091676.1| hypothetical protein BLi02094 [Bacillus licheniformis ATCC 14580]
 gi|163119474|ref|YP_079257.2| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|52348349|gb|AAU40983.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|145902981|gb|AAU23619.2| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
          Length = 133

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN    + Q+AE   +S  +L KIL  L KAG++E+ 
Sbjct: 1   MKYSKATNYALHTMLFLAA--GAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G  GG RL R  + I+ LD++ A E +  + +C  +H  +C
Sbjct: 59  SGANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSEC 100


>gi|282899141|ref|ZP_06307122.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196057|gb|EFA70973.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 149

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  N  P +I QIA    I + +L ++L  L + GI+++ R
Sbjct: 1   MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT+LD+++  E     +AE   + K       S  +  + ++A  A
Sbjct: 61  GSKGGYLLAREPRKITLLDILECLEGLDIKIAEDNTNPKTAPKTADSGIIDEIWKEARQA 120

Query: 118 FFDVLTQYSIECLVRNRS 135
              VL +YS+E L   R+
Sbjct: 121 ANLVLEKYSLEDLCEKRT 138


>gi|239907465|ref|YP_002954206.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239797331|dbj|BAH76320.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 151

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+  +Y IR ++Y A+H D     R  +IAEA  I   FL K+ Q L KAG++   +
Sbjct: 1   MRLTRAGEYAIRCVLYLAMHQDRTLIGR-KEIAEAMDIPAQFLGKVAQQLAKAGVISIRQ 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R    IT+L V++A +   F+ +C       C     C + +V   A    
Sbjct: 60  GSLGGYELARRPQDITLLAVIEAIDGEIFLNDCI-QRPGSCDRQAICSVHNVWDTARRQL 118

Query: 119 FDVLTQYSI 127
            D L   ++
Sbjct: 119 RDTLGSTTL 127


>gi|86159005|ref|YP_465790.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775516|gb|ABC82353.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 159

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG
Sbjct: 5   LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I+ LDV+++ E    +  C       C    +C + SV R       
Sbjct: 65  PHGGYALARMPVDISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERML 123

Query: 120 DVLTQYSIECL 130
           DV  Q  +  L
Sbjct: 124 DVYRQAKLSEL 134


>gi|39995641|ref|NP_951592.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39982404|gb|AAR33865.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|298504663|gb|ADI83386.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           sulfurreducens KN400]
          Length = 154

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R +   A ++   P ++  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MKLSTKSRYGLRAIFDIAYNSGSLPAQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
            +GG  L +  ++IT+ DV+ ATE    + EC +  K   +C   G+C    +  +A   
Sbjct: 61  PQGGYCLAKKPEEITVADVLLATERDINLVECTSKRKKKGECTFDGTCVTQELWCEAGAK 120

Query: 118 FFDVLTQYSIECL 130
             D  + ++++ L
Sbjct: 121 LLDFFSGFTVKDL 133


>gi|161505868|ref|YP_001572980.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867215|gb|ABX23838.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 167

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  LM C + +    R   + +IA+   +   +L KI   L KAG+V ++ G+ GG 
Sbjct: 9   EYGIHSLM-CMVDSKGDAREMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKGGGF 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115
           +L +PA+ IT+LDVV A +    + EC         F          G CG+ SV+  A 
Sbjct: 68  QLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLTVFDEQPPAWACEGICGVRSVMDMAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L Q++I  L R 
Sbjct: 128 QRMEEALEQHTILDLARK 145


>gi|331091033|ref|ZP_08339875.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405255|gb|EGG84791.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 152

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +++  P  I+ I+    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQYSEVEPVSINSISARQGISERYLEQLMALLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +  + I++ DV++A E      EC   S +  C   G C    V ++   + 
Sbjct: 61  AGGGYVLAKEKEDISVGDVLRALEGKLEPVECSGFSAEESCEAAGGCVTKYVWQRINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            + + +  ++ LVR   ++  I
Sbjct: 121 NNTVDEIKLDQLVRESKAMNSI 142


>gi|269791825|ref|YP_003316729.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099460|gb|ACZ18447.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 146

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + + ++T Y +R L   ++ +   P +I++IAEA  I   FL  IL  L   G VE++RG
Sbjct: 4   IGVNQKTQYALRALYELSVQYRAGPVKIARIAEAQRIPRKFLEVILSELKAMGYVESLRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP  +I+I DV++  +      +C       C L G C    +  +A  A  
Sbjct: 64  REGGYVLARPPWEISIGDVIRDVQGPLSPVDCLIGRG-GCRLSGQCSFRPLWARAARALE 122

Query: 120 DVLTQYSIECLV 131
           +V    + + LV
Sbjct: 123 EVYDGTTFQDLV 134


>gi|113869472|ref|YP_727961.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113528248|emb|CAJ94593.1| putative transcriptional regulator [Ralstonia eutropha H16]
          Length = 150

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A  +   P  I+++ +   IS   L K+   L K G +   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWISATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++TI  +++  E    V +C       C L G+C L   L  A  AF+
Sbjct: 61  RHGGLQLGPGAERLTIGTILRELEGHKAVIDC---DNPPCALNGNCRLKRALDVAEQAFY 117

Query: 120 ---------DVLTQYSIECLVR 132
                    DV    + E ++R
Sbjct: 118 LALDDVTLADVTGSQTAESIIR 139


>gi|317122069|ref|YP_004102072.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermaerobacter marianensis DSM 12885]
 gi|315592049|gb|ADU51345.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
           marianensis DSM 12885]
          Length = 141

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R +   A  +   P  + ++AEA  + E +L +++ PL K G+V++VRG
Sbjct: 1   MQLSTRGRYGVRAMFELARRYGQGPVPLREVAEAQQLPENYLEQLMAPLRKGGLVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
            +GG  L R   QIT+ D+V+       + +     + D    G+  +   + +A+  A 
Sbjct: 61  AQGGYVLARSPRQITVADIVR-------LLDGPIGPETDQEATGTPSVADPVWEAVRQAI 113

Query: 119 FDVLTQYSIECLVRN 133
            DVL   +++ LVR 
Sbjct: 114 TDVLEGTTLDDLVRQ 128


>gi|283852223|ref|ZP_06369496.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572449|gb|EFC20436.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 145

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H ++ P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLIDIALHGSERPVRIQDIAKRRNISVKYLEQLIRALKKAGFIHSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    + I + DVV+A E    + EC  +    C +   C    +  +A  + F
Sbjct: 61  PKGGHILAMAPEDIRVGDVVRALEVRPELTECVGNPDA-CLIASDCVTRQIWARATASLF 119

Query: 120 DVLTQYSI-ECLVRNRSS 136
             L    + + LV+ R S
Sbjct: 120 KELDAIHVSDLLVQARKS 137


>gi|281355615|ref|ZP_06242109.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281318495|gb|EFB02515.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 148

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R+L+  A++   D P  I +IA    ISE ++ +++  L KAG V +VR
Sbjct: 1   MKISTKGRYGLRILLDIALYRVGDKPRMIREIASNQEISEKYISRLIIELRKAGFVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKA 114
           G  GG  L R  + I++LDV++  E    + +C  S    C     C      T + +K 
Sbjct: 61  GVNGGYTLTRKPEDISVLDVLETMEGPVAIVDCMNSSGEVCRRKSQCPTQRMWTEINQKI 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
            +AF     +  +E  + N  ++
Sbjct: 121 RSAFAAYTLKDLVELYISNGETV 143


>gi|269127506|ref|YP_003300876.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
           DSM 43183]
 gi|268312464|gb|ACY98838.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
           curvata DSM 43183]
          Length = 154

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 15/106 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A+    P    Q+AE+  I   FL  IL  L ++G+V + RG 
Sbjct: 1   MRLSARVDYALRAAAELAVAGSTPVTAVQLAESQQIPPKFLENILGQLRRSGLVRSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
            GG  L +PAD+I++ D+++A               ID PL+G  G
Sbjct: 61  DGGYWLAKPADEISLADIIRA---------------IDGPLLGVRG 91


>gi|225175552|ref|ZP_03729546.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168881|gb|EEG77681.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 149

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 8/130 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+H+ +    +  +A+   ISE +L  +   L KAG++ +VRG
Sbjct: 1   MRLSTKGRYGVRAMFDLALHSGEGAIALKSVAQREHISEKYLEHLFASLKKAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSV---LRK 113
            +GG RL RP ++IT+ D+++  E      EC      H+  C     C + S+   +R 
Sbjct: 61  AQGGYRLARPPEEITLGDIIRVLEGPIAPTECVIDDDGHE-SCERSTDCVMRSIWGNVRD 119

Query: 114 ALNAFFDVLT 123
            +N   D +T
Sbjct: 120 QINEILDGIT 129


>gi|184158243|ref|YP_001846582.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183209837|gb|ACC57235.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
          Length = 182

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G R
Sbjct: 3   YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ 
Sbjct: 63  GGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L  +++
Sbjct: 123 QAEKAMRDALGAHTL 137


>gi|303249415|ref|ZP_07335637.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302489175|gb|EFL49145.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 150

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    D P     IAE   I + FL  IL  L + G V+  RG
Sbjct: 1   MPVTQKCQYALRALFELARRKGDGPIPAGGIAERQAIPKRFLEVILHQLRQGGFVDAQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RPA+ +T+ +V++  +      +C       DCPL G C    V ++A  A 
Sbjct: 61  KEGGFYLARPAETVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGGCVFRDVWQEAQAAL 120

Query: 119 FDVLTQYSIECLV---RNRSSIKKI 140
             V    ++  LV   R+R  +  +
Sbjct: 121 EKVYDARNLRDLVEEDRHRHDMAAV 145


>gi|21225697|ref|NP_631476.1| hypothetical protein SCO7427 [Streptomyces coelicolor A3(2)]
 gi|81858295|sp|Q9L132|NSRR_STRCO RecName: Full=HTH-type transcriptional repressor nsrR
 gi|7160161|emb|CAB76346.1| Conserved hypothetical protein SC6D11.23 [Streptomyces coelicolor
           A3(2)]
          Length = 148

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD  +R LM  A+    D P    ++AE   +      K +  L   G+VE  R
Sbjct: 1   MRLTKFTDLALRSLMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L     ++++  +V+  E    V +C   +   CPL G+C L   LR A  AF
Sbjct: 61  GRGGGLTLTDLGRRVSVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  LV
Sbjct: 119 YAALDPLTVTDLV 131


>gi|319645572|ref|ZP_07999804.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
 gi|317392458|gb|EFV73253.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
          Length = 141

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN    + Q+AE   +S  +L KIL  L KAG++E+ 
Sbjct: 9   MKYSKATNYALHTMLFLAA--GAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESA 66

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G  GG RL R  + I+ LD++ A E +  + +C  +H  +C
Sbjct: 67  SGANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSEC 108


>gi|153813655|ref|ZP_01966323.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
 gi|149830271|gb|EDM85364.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
          Length = 143

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y IRV++  A HN+     +  IA+   ISE +L  I+  L K   V+ +RG
Sbjct: 1   MKISTRGRYAIRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116
           + GG RL R   + TI  +++ TE S     C   H   C    SC    +     K LN
Sbjct: 61  KGGGYRLVRTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEGFYKLLN 120

Query: 117 AFFDVLT 123
            +FD +T
Sbjct: 121 EYFDGIT 127


>gi|226303826|ref|YP_002763784.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229492573|ref|ZP_04386376.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
          erythropolis SK121]
 gi|226182941|dbj|BAH31045.1| putative Rrf2 family DNA-binding protein [Rhodococcus
          erythropolis PR4]
 gi|229320559|gb|EEN86377.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
          erythropolis SK121]
          Length = 151

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T + DY +R L+  A     P +   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1  MHITAKVDYAVRTLVELAAVGPDPAKAEFLAKSQVIPHKFLEAVLSDLRRGGLVNSRRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L R AD+ITI DV++A E
Sbjct: 61 DGGYWLARSADEITIADVIRAVE 83


>gi|237785127|ref|YP_002905832.1| Rrf2 family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758039|gb|ACR17289.1| transcriptional regulator, Rrf2 family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 139

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LTK +D G+R LM+     +      ++AEA       + K++  L + GI++  RGR
Sbjct: 1   MNLTKFSDLGLRALMHMVGSGNARTTAREVAEAINAPRTHVSKVISRLTEFGIIDATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L   A+  ++  +V+  E    V +C   H   CP   +C L   L +A  AFF 
Sbjct: 61  GGGITLVDGAEDYSVGAIVRFLEGPSPVIDC--EHPHPCPFNVNCRLQHELAQAQEAFFA 118

Query: 121 VLTQYSIECLVRNRSSIK 138
            L   +I+ +   R  + 
Sbjct: 119 SLDAVAIKDITPVRPQVP 136


>gi|238019616|ref|ZP_04600042.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
 gi|237863657|gb|EEP64947.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
          Length = 157

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           M L + TDY  R++++ A+    P+      S +AE   I E FL KI++ L+ AGI+++
Sbjct: 8   MKLNQATDYAFRMVLHMAL---LPSGTKLTGSVLAEQELIPERFLLKIMRSLIAAGIMKS 64

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113
            RG  GG  L R   +I++LDV++A E   ++  C     S    C  +G C +   +  
Sbjct: 65  FRGVDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--MGHCAINEAMGT 122

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIK 138
             +   + L Q + + L +    I+
Sbjct: 123 IQDQLINQLEQVNFKTLAQREQLIE 147


>gi|47096299|ref|ZP_00233896.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254830378|ref|ZP_05235033.1| hypothetical protein Lmon1_03417 [Listeria monocytogenes 10403S]
 gi|254900131|ref|ZP_05260055.1| hypothetical protein LmonJ_09970 [Listeria monocytogenes J0161]
 gi|254911315|ref|ZP_05261327.1| Rrf2 family protein [Listeria monocytogenes J2818]
 gi|254935642|ref|ZP_05267339.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|47015344|gb|EAL06280.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608223|gb|EEW20831.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|293589246|gb|EFF97580.1| Rrf2 family protein [Listeria monocytogenes J2818]
          Length = 138

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKA  +E+V
Sbjct: 1   MKFSKATNYALHTMVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|291085972|ref|ZP_06571283.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
 gi|291069042|gb|EFE07151.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
          Length = 117

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ E   +S   + KI+  L +AG V  +RG+ GG+RL +PA  I I DVV+  E   
Sbjct: 4   ISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPAKAIGIGDVVRELEPLS 63

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 64  LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 114


>gi|258516089|ref|YP_003192311.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779794|gb|ACV63688.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 18/114 (15%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54
           M + + TDY  R + Y ++    P    Q+ EA  I+E       FL KI   L+KAGIV
Sbjct: 1   MKINQATDYAFRAVFYLSL---LPR--GQVVEAKLIAEDENIPTRFLLKIFPQLIKAGIV 55

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS-------HKIDCPL 101
           E+ RG RGG  L +   +IT+ DV++A E    V  C  S       H   CP+
Sbjct: 56  ESQRGNRGGYSLAKKPAEITLKDVLEAVEGPVMVNRCLLSPEGCNKNHTAICPI 109


>gi|229826314|ref|ZP_04452383.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
          49176]
 gi|229789184|gb|EEP25298.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
          49176]
          Length = 153

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ +  YG+R ++  A+H D    +S IA    ISE +L +++  L KAGIV ++RG 
Sbjct: 1  MKISTKGRYGLRAVLDIAMH-DEAASVSSIAARQFISENYLERLIAMLKKAGIVNSLRGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +GG  L RPA++I++ +V++A E      +C
Sbjct: 60 QGGYVLARPAEEISVGEVLRALEGDLNPVDC 90


>gi|256377869|ref|YP_003101529.1| BadM/Rrf2 family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922172|gb|ACU37683.1| transcriptional regulator, BadM/Rrf2 family [Actinosynnema mirum
           DSM 43827]
          Length = 141

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TD  +RVLM  A   D    +  +A +  +    + K++Q L K G+V T RGR
Sbjct: 1   MHLSKATDIALRVLMLAAA-KDAQLTVDDLATSMNVPRNHVAKVVQRLQKEGLVTTARGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV +   A  ++   VV+  E    V +C    +  CPL  +C L   LR A  AFF 
Sbjct: 60  NGGVSVPPGARGVSAGHVVRRFEGEDEVVDC---EQGPCPLHRACLLRGALRTAREAFFA 116

Query: 121 VLTQYSIECLV 131
            L    +  L+
Sbjct: 117 SLDTVLLRDLI 127


>gi|167771918|ref|ZP_02443971.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
           17241]
 gi|167665716|gb|EDS09846.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
           17241]
          Length = 143

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H       + +IA+   ISE +L  IL+ LV+   +  VRG
Sbjct: 1   MMISTKGRYALRVMVDLAEHQGEGYIPLKEIAQRQEISEKYLEAILKVLVREHFLIGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116
           + GG RL R  +Q T   +++ TE S     C   H + CP    C    + +K    +N
Sbjct: 61  KGGGYRLSRAPEQYTAGSIIRLTEGSLAPVACLEPHALACPRAAHCRTLPMWKKFDQVVN 120

Query: 117 AFFDVLT 123
            FFD  T
Sbjct: 121 DFFDSYT 127


>gi|317502405|ref|ZP_07960570.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331087998|ref|ZP_08336921.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316896215|gb|EFV18321.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330409309|gb|EGG88758.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 131

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  TK +DY IRV+   A+ +     I ++ E   I   F +KILQ + K+G++E  RG 
Sbjct: 1  MLFTKESDYAIRVIR--ALQDGGKKTIKELCELEQIPSAFGYKILQKMNKSGLIEIRRGP 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +GG +L +   + T+ DVV A E  F V EC
Sbjct: 59 KGGYQLAKDIGEFTLYDVVTAIEPDFAVMEC 89


>gi|126643101|ref|YP_001086085.1| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
          Length = 144

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+ GG+RL   A  + 
Sbjct: 1   MYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGKGGGIRLNPKALDLK 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLVRN 133
           +  +V+  +    + EC   +   C L   CGL  +L +AL +F+  L QY++ E L + 
Sbjct: 61  LGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQYTLGEVLQQP 117

Query: 134 RS----SIKKIFNA 143
           +S    S+   +N+
Sbjct: 118 KSASDHSLSPFYNS 131


>gi|169795834|ref|YP_001713627.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|260554898|ref|ZP_05827119.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
           19606]
 gi|301345360|ref|ZP_07226101.1| putative transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512433|ref|ZP_07237670.1| putative transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301596111|ref|ZP_07241119.1| putative transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332853212|ref|ZP_08434632.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332869405|ref|ZP_08438771.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
 gi|169148761|emb|CAM86627.1| conserved hypothetical protein; putative transcriptional regulator
           [Acinetobacter baumannii AYE]
 gi|193077439|gb|ABO12252.2| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
 gi|260411440|gb|EEX04737.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
           19606]
 gi|332728782|gb|EGJ60142.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332732736|gb|EGJ63953.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
          Length = 182

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G R
Sbjct: 3   YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ 
Sbjct: 63  GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L  +++
Sbjct: 123 QAEKAMRDALGAHTL 137


>gi|221633611|ref|YP_002522837.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
           5159]
 gi|221156767|gb|ACM05894.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
           5159]
          Length = 146

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R +YG+R ++  A ++   P  +S IA+   +   +L +++ PL +AG+V + RG
Sbjct: 1   MKVSTRGEYGLRAMVSLARMYGRGPMPLSVIAQDSAVPLAYLEQLMLPLRRAGLVVSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L RP +Q+ + ++ +  E      +C    A   I CP++  C    V  K  +
Sbjct: 61  AHGGYELARPPEQVKVGEIYRVMEGPIAPMDCVREDADEDI-CPMIDGCATRIVWLKLRD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           +  +VL   ++  L+ +
Sbjct: 120 SIVEVLDSTTLADLISH 136


>gi|300854396|ref|YP_003779380.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434511|gb|ADK14278.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 148

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH +D P+ I  I+E   ISE +L ++   L K+ +V+++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYSDEPSSIKSISERQNISEYYLEQLFSNLRKSNLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R    IT+ D++K  E    +++C   +++  C  +  C    +  +   + 
Sbjct: 61  AQGGYILNREPKDITVADIMKVLEGPIEISDCVDENNENSCSNMDCCATRLLWSRIKESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
             V+   +++ +V +   +K+    G
Sbjct: 121 EQVMKSTTLQDMVDDYIQMKQEKTKG 146


>gi|15807088|ref|NP_295817.1| rrf2 protein [Deinococcus radiodurans R1]
 gi|6459891|gb|AAF11645.1|AE002045_5 rrf2 protein [Deinococcus radiodurans R1]
          Length = 197

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  +AE   +S+ +L +I   L +AG ++++RG 
Sbjct: 46  MWVSTKAQYGLRALVEIGRRGGEAVPLKDVAERQGLSQHYLEQIASNLRRAGFIKSIRGA 105

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA+ I   DVV A E S     C     + C     CG  ++  +   A  D
Sbjct: 106 HGGYRLARPAEAINAYDVVTALEGSIAPVSCVEDDHV-CDSRNVCGTQNLWFRVDAALRD 164

Query: 121 VLTQYSIECLV 131
           VL   ++  L+
Sbjct: 165 VLGNTTLADLI 175


>gi|168700728|ref|ZP_02733005.1| hypothetical protein GobsU_14484 [Gemmata obscuriglobus UQM 2246]
          Length = 154

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++  +Y +R +++ A         +QIAEA  + + +L KILQ L K GIV+T RG  GG
Sbjct: 3   SRTVEYALRAVVHLAHEAPKARTTAQIAEATQVPKDYLSKILQGLAKKGIVDTQRGVGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPL 101
           V L +    +TILDVV A E    +  C     +H  + CPL
Sbjct: 63  VSLTKSPHDLTILDVVNAVEPIERITTCPLNLPNHGPNLCPL 104


>gi|257469482|ref|ZP_05633574.1| hypothetical protein FulcA4_09098 [Fusobacterium ulcerans ATCC
           49185]
 gi|317063726|ref|ZP_07928211.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689402|gb|EFS26237.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 136

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 7/126 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L+Y  I+ D  NRI   ++I+E   I  LF  +IL+ L KA +V   
Sbjct: 1   MRLKNEIEYVFRILLYLTINGD--NRIISSNEISEKEEIPHLFSLRILKKLEKADLVLIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116
           +G +GG +L + + +IT+ D +++ E +  + +C  S +  C L  G+CG+  +L+   +
Sbjct: 59  KGAKGGYKLKKDSSEITLKDAIESIEGNICIKDCLESPE-SCTLRKGNCGVHRILKDIES 117

Query: 117 AFFDVL 122
            F   L
Sbjct: 118 QFISRL 123


>gi|295695250|ref|YP_003588488.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
          2912]
 gi|295410852|gb|ADG05344.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
          2912]
          Length = 155

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ RT+YG+R L+  A  +   P    QIAE   I E FL +I+  L +AGIV++VRG
Sbjct: 1  MKLSNRTEYGLRALVTLAERSGGAPMSTRQIAEIEGIPEPFLDQIMVLLRRAGIVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            GG  L +  D++++ +VV+  E S  +  C      D
Sbjct: 61 VNGGFLLAQSPDRVSVGEVVRVLEGSLLLIGCVDEENGD 99


>gi|293607996|ref|ZP_06690299.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292828569|gb|EFF86931.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 182

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G R
Sbjct: 3   YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ 
Sbjct: 63  GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVREKCAVFNNAPPDWATSGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L  +++
Sbjct: 123 QAEKAMRDALGAHTL 137


>gi|284800916|ref|YP_003412781.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
 gi|284994102|ref|YP_003415870.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
 gi|284056478|gb|ADB67419.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
 gi|284059569|gb|ADB70508.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
          Length = 138

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  ++Y A  N  P +   + ++A    +S  +L K+L  LVKA  +E+V
Sbjct: 1   MKFSKATNYALHTIVYLA--NLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            G  GG +L  PA  I+ LDV++A E       C   +H    P    C +  V+ KA  
Sbjct: 59  TGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP---HCLIGEVMNKAEQ 115

Query: 117 AFFDVLTQYSIECLV 131
              D L++ ++  +V
Sbjct: 116 QMEDYLSKQTVGSIV 130


>gi|227357123|ref|ZP_03841492.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227162655|gb|EEI47622.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 126

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+++ +   +S   + KI+  L   G VE +RG+ GG+RL +PA  I + +VV+A  E  
Sbjct: 12  ITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRGKNGGIRLGKPAADIIVGEVVRAL-EPL 70

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            +  C A     C +  +C L  VL +A+  F   L ++++  LV N S + K+ 
Sbjct: 71  SLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSPLYKLL 122


>gi|153953942|ref|YP_001394707.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854556|ref|YP_002471678.1| hypothetical protein CKR_1213 [Clostridium kluyveri NBRC 12016]
 gi|146346823|gb|EDK33359.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568280|dbj|BAH06264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 148

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH  D P  I  I+E   ISE +L ++   L K+ ++ ++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYGDEPLSIKTISERQGISEYYLEQLFSNLRKSNLIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R    IT+ D++   E    +++C   +++  C  +  C    +  +  +  
Sbjct: 61  SQGGYILNREPKNITVWDIMGVLEGPIEISDCVDDNNESSCDNIDCCATRLLWSRIKDGI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            +++   +++ +V + +S+K+
Sbjct: 121 DEIMKSTTLQDMVDDYNSMKQ 141


>gi|310658799|ref|YP_003936520.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM
           519]
 gi|308825577|emb|CBH21615.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
          Length = 148

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A+    + P  +  IA+   +SE +L +I   L K+G+V++VR
Sbjct: 1   MKLSTKGRYGLKAIFELALKEEENLPLSLKYIADKNGLSEQYLEQIFAILKKSGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +P+ QIT+  V++A E     ++C      DC     C    V ++  ++ 
Sbjct: 61  GAQGGYYLSKPSSQITVGQVLRALEGPMAPSDCVLEEDADCENSDFCVTKVVWQRIKDSV 120

Query: 119 FDVLTQYSIECLV 131
             V+   +++ +V
Sbjct: 121 DSVIDSVTLKDMV 133


>gi|253583197|ref|ZP_04860395.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
 gi|251833769|gb|EES62332.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
          Length = 140

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTKVRYGLRALAYIAEKSGEGKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +  ++IT+  + K  +E   V +C  S  HK  C    +CG T +  K  +
Sbjct: 61  GPNGGYRLAKEPNEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGSTCIWSKLDS 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140


>gi|323702187|ref|ZP_08113854.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532874|gb|EGB22746.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 147

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  +  +AE   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MRLSTKGHYGLKAMFDLAMHYGAEPIPLKLVAERQSLSEHYLEQLIAVLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L RP  +I + DV++A E      +C +  +   C  V  C    +  K  ++ 
Sbjct: 61  AQGGYILARPPAEIKVGDVIRALEGPIAPLDCVSEQEPTLCEKVDYCISRDIWAKVRDSI 120

Query: 119 FDVLTQYSIECLVRN 133
            +VL   ++E + R 
Sbjct: 121 AEVLDSITLEDMCRE 135


>gi|54293583|ref|YP_125998.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
 gi|53753415|emb|CAH14868.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
 gi|307609396|emb|CBW98885.1| hypothetical protein LPW_06721 [Legionella pneumophila 130b]
          Length = 153

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG  V++Y A H         IA    ++   + KIL+ L  AG++ +VRG 
Sbjct: 2   LRVSKLADYGTVVMVYLAKHPQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA +I++  ++ A EE     EC +    DC L G C +    R   +A   
Sbjct: 62  SGGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIET 120

Query: 121 VLTQYSIECLVR 132
            L   S+E L +
Sbjct: 121 ALDSVSLEALAK 132


>gi|302548372|ref|ZP_07300714.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302465990|gb|EFL29083.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
          Length = 149

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TD  +R +M  A+    P    QIA    +    L K+   L   G++ET RGR
Sbjct: 1   MRLTKSTDLALRAIMRLAVAGAEPCTARQIAGEMRVQYSHLAKVAARLQHLGLIETRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  +V+  E +  V +C       CPL   C L   LR+A  AFF 
Sbjct: 61  GGGLVLTETGRTASVGQLVRELEGADEVVDC--EGDTPCPLRQGCRLRMALRQAQEAFFS 118

Query: 121 VLTQYSIECLV 131
            L   ++  L+
Sbjct: 119 SLDPLTVTDLI 129


>gi|297617120|ref|YP_003702279.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144957|gb|ADI01714.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 133

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++T+Y +RV++  A +         +I+E   I E+FL K +Q L +AG+V T RG
Sbjct: 1   MQITRQTEYAVRVMLELARLPKGEMLSAREISEKQQIPEVFLKKTIQILARAGLVHTQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGGV+L +   ++T+ D++ A E    +  C      +C     C +  VL +A  A  
Sbjct: 61  PRGGVQLAKDPTEVTLADILVAVEGPLALNVCLVPG-YECVNKPDCKVHRVLARAQKALV 119

Query: 120 DVLT 123
             L+
Sbjct: 120 SELS 123


>gi|157736632|ref|YP_001489315.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           RM4018]
 gi|315635796|ref|ZP_07891058.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
 gi|157698486|gb|ABV66646.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
           RM4018]
 gi|315479775|gb|EFU70446.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
          Length = 132

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++++Y +  L+  A  N  P  +  +++   IS+ FL KI+Q L K  +V + RG 
Sbjct: 1   MLLTRKSEYALLSLISIA-KNKEPKNVDVLSKELDISKSFLAKIMQNLAKHELVISHRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSC---GLTSVLRKA 114
            GG  L +P D+ITIL++V+A EE    V EC  S +  CP     SC    L + L+  
Sbjct: 60  NGGFVLKKPLDEITILEIVEAAEERVPMVFECAPSLQ-SCPNNKAKSCIIWPLLNNLQFK 118

Query: 115 LNAFFDVLTQYSI 127
           +N F   LT   I
Sbjct: 119 VNDFLSKLTLKDI 131


>gi|300813621|ref|ZP_07093949.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512257|gb|EFK39429.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 135

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY  R+  + A H +       IAE C ++E F  +IL+ L  AGI    RG 
Sbjct: 1  MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          +GG  L RP ++IT+  ++ A E    +  C A
Sbjct: 61 KGGYGLKRPKEEITLYQIICAIEGPTVINRCLA 93


>gi|210615813|ref|ZP_03290794.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
 gi|210150149|gb|EEA81158.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
          Length = 151

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A +++  P  IS I+    ISE +L +++  L +AG+++++RG
Sbjct: 1   MKISTKGRYGLRALIDIAQYSEIEPVPISSISARQDISERYLEQLMALLKRAGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L +   +I++ DV++A E +    EC A H+ + C   G C    V +K   + 
Sbjct: 61  AGGGYVLAKDVSEISVGDVLRALEGNLEPVECAAFHEEESCEAAGGCVTKYVWKKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              + +  ++ LV     I++
Sbjct: 121 NRTVDEIDLKQLVEESKQIQQ 141


>gi|317062001|ref|ZP_07926486.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687677|gb|EFS24512.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 152

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 13  MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 72

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C  S  HK  C    +CG T +  K  +
Sbjct: 73  GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 131

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 132 AMTKILKETTLNEFIKNKDMI 152


>gi|298247460|ref|ZP_06971265.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
 gi|297550119|gb|EFH83985.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
          Length = 168

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 1  MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L++  ++G+    VL         P +   +AE   +SE +L K LQ L + GI+E+V
Sbjct: 1  MKLSEGVEWGLHCTSVLASLPTKATLPTKA--LAEYHGVSETYLSKHLQALTRGGIIESV 58

Query: 58 RGRRGGVRLCRPADQITILDVVKA 81
           G RGG RL RPA +IT+LDVV+A
Sbjct: 59 PGPRGGYRLARPATEITLLDVVEA 82


>gi|282855397|ref|ZP_06264720.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
 gi|282586777|gb|EFB92022.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
          Length = 151

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  YG+R ++  +    +  P  +S +A+A  +S+ +L +++  L +AGI+ + R
Sbjct: 1   MKVSTRAHYGLRAVIAISEMARSGLPVSVSDVAKAENLSDTYLEQLVSKLRRAGILRSYR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKAL 115
           G RGG  L R  D IT+ +V+KA  E     EC       C L    G    +S   + L
Sbjct: 61  GARGGYELVRDPDTITVAEVLKAAGEQIIFPECTTPE--GCELAHQRGHVCASSHFWQNL 118

Query: 116 NAFFD-VLTQYSIECLVRN 133
           N+  + +  + ++  L+RN
Sbjct: 119 NSMVNKIAEETTVGSLIRN 137


>gi|270308844|ref|YP_003330902.1| transcriptional regulator [Dehalococcoides sp. VS]
 gi|270154736|gb|ACZ62574.1| transcriptional regulator [Dehalococcoides sp. VS]
          Length = 148

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  + +  +   A+H  + P  I  +A+   ISE +L ++  PL  AG+V +VRG
Sbjct: 1   MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + D+VKATE S   +EC    ++ C     C   +V  K   A  
Sbjct: 61  ANGGFVLARDPKEIRLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLKIKKATD 119

Query: 120 DVLTQYSIECLVRN 133
           ++L   ++E LV+ 
Sbjct: 120 EILDSINLENLVQQ 133


>gi|328948431|ref|YP_004365768.1| BadM/Rrf2 family transcriptional regulator [Treponema
           succinifaciens DSM 2489]
 gi|328448755|gb|AEB14471.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           succinifaciens DSM 2489]
          Length = 142

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  C+   D    ++ IAE   +S  +L  I+  LVKAG+VE +RG
Sbjct: 1   MLISTRGRYALRVIIELCSHGKDEFVPLNVIAENQDVSLKYLESIVALLVKAGLVEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG RL + AD+ ++ +++K TE +     C   +   CP    C    +  K      
Sbjct: 61  KKGGYRLTKDADEYSVGEILKLTEGTLAPVTCLEENAETCPRSAECKTLPMWEKLDTIIS 120

Query: 120 DVLTQYSIECLVRNRS 135
           + L    I  L++  S
Sbjct: 121 NYLYSVKISDLLKPES 136


>gi|300821270|ref|ZP_07101418.1| Rrf2 family protein [Escherichia coli MS 119-7]
 gi|300899716|ref|ZP_07117942.1| Rrf2 family protein [Escherichia coli MS 198-1]
 gi|300922416|ref|ZP_07138536.1| Rrf2 family protein [Escherichia coli MS 182-1]
 gi|300940665|ref|ZP_07155226.1| Rrf2 family protein [Escherichia coli MS 21-1]
 gi|300949137|ref|ZP_07163179.1| Rrf2 family protein [Escherichia coli MS 116-1]
 gi|300957838|ref|ZP_07170016.1| Rrf2 family protein [Escherichia coli MS 175-1]
 gi|300987257|ref|ZP_07178086.1| Rrf2 family protein [Escherichia coli MS 45-1]
 gi|300988644|ref|ZP_07178784.1| Rrf2 family protein [Escherichia coli MS 200-1]
 gi|301023423|ref|ZP_07187206.1| Rrf2 family protein [Escherichia coli MS 69-1]
 gi|301646624|ref|ZP_07246490.1| Rrf2 family protein [Escherichia coli MS 146-1]
 gi|309796989|ref|ZP_07691389.1| Rrf2 family protein [Escherichia coli MS 145-7]
 gi|300305877|gb|EFJ60397.1| Rrf2 family protein [Escherichia coli MS 200-1]
 gi|300315469|gb|EFJ65253.1| Rrf2 family protein [Escherichia coli MS 175-1]
 gi|300356727|gb|EFJ72597.1| Rrf2 family protein [Escherichia coli MS 198-1]
 gi|300397010|gb|EFJ80548.1| Rrf2 family protein [Escherichia coli MS 69-1]
 gi|300407734|gb|EFJ91272.1| Rrf2 family protein [Escherichia coli MS 45-1]
 gi|300421235|gb|EFK04546.1| Rrf2 family protein [Escherichia coli MS 182-1]
 gi|300451385|gb|EFK15005.1| Rrf2 family protein [Escherichia coli MS 116-1]
 gi|300454553|gb|EFK18046.1| Rrf2 family protein [Escherichia coli MS 21-1]
 gi|300526159|gb|EFK47228.1| Rrf2 family protein [Escherichia coli MS 119-7]
 gi|301075171|gb|EFK89977.1| Rrf2 family protein [Escherichia coli MS 146-1]
 gi|308119402|gb|EFO56664.1| Rrf2 family protein [Escherichia coli MS 145-7]
 gi|315288459|gb|EFU47857.1| Rrf2 family protein [Escherichia coli MS 110-3]
 gi|315293540|gb|EFU52892.1| Rrf2 family protein [Escherichia coli MS 153-1]
 gi|315299059|gb|EFU58313.1| Rrf2 family protein [Escherichia coli MS 16-3]
 gi|323171610|gb|EFZ57256.1| rrf2 family protein family protein [Escherichia coli LT-68]
 gi|324005241|gb|EGB74460.1| Rrf2 family protein [Escherichia coli MS 57-2]
 gi|324013821|gb|EGB83040.1| Rrf2 family protein [Escherichia coli MS 60-1]
          Length = 125

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL +PA  I I DVV+  E   
Sbjct: 12  ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 122


>gi|291543838|emb|CBL16947.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           18P13]
          Length = 142

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A HN      ++ IAE   ISE +L  I+  L K G+V+ +RG
Sbjct: 1   MMISTKGRYALRVMIDLAEHNSGGYVPLADIAERQEISEKYLESIVSMLSKKGLVDALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ D++  TE S     C       C     C    + ++     +
Sbjct: 61  KGGGYRLNRAPDQYTVADILYVTEGSMAPVACLEPGAKTCDRAAYCRTLDMWKR----LY 116

Query: 120 DVLTQY----SIECLVRNRSS 136
           +++TQ+    +I  L+ ++S 
Sbjct: 117 ELITQFFSGITIADLIADKSG 137


>gi|255283408|ref|ZP_05347963.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
 gi|255266056|gb|EET59261.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
          Length = 152

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A++  +    IS +A    ISE +L ++   L KAG++ + RG
Sbjct: 1   MKLSTKGRYGLRALIDLAVYCGEEAVPISSVAARQGISESYLEQLFAKLRKAGLIISERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG RL +PA++I++ D+++A E +    EC     +  C     C    V ++   + 
Sbjct: 61  AQGGYRLAKPAEEISVGDILRALEGNLDAVECPGLKEEAGCENADFCVTKYVWQRINESI 120

Query: 119 FDVLTQYSIECLVRN 133
            + + +  ++ LVR 
Sbjct: 121 TEAVDEIRLDQLVRE 135


>gi|257467708|ref|ZP_05631804.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 140

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C  S  HK  C    +CG T +  K  +
Sbjct: 61  GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140


>gi|29832300|ref|NP_826934.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29609419|dbj|BAC73469.1| putative transcriptional regulator [Streptomyces avermitilis
          MA-4680]
          Length = 152

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R ++  A+  +D P +   IA A  I   FL  IL  L + G+V + RG
Sbjct: 1  MRISARADYAVRAVLELAVREDDGPVKAEAIAAAQDIPHKFLEGILGDLRRGGLVASRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R AD IT+ DV++A +
Sbjct: 61 GNGGYRLARAADTITVADVIRAVD 84


>gi|84499296|ref|ZP_00997584.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
 gi|84392440|gb|EAQ04651.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
          Length = 139

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R LM  A   +     ++IA+   IS   L K++Q L + G V T RG 
Sbjct: 1   MRLTSFTDYGLRALMRMASVPERAFSTAEIADEFGISRNHLNKVVQRLARHGFVATRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
            GG  L  PA +I + D+V+  E+   + ECF+         G+C +T V R
Sbjct: 61  GGGAILALPASEIGLGDLVRLLEQDQALVECFSPD-------GACCVTPVCR 105


>gi|319941644|ref|ZP_08015968.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804874|gb|EFW01728.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
          Length = 178

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+T+ TD  +RVLMY CA  +     +++IAE    +   + K++  L + G + T RG
Sbjct: 1   MHITRFTDLSLRVLMYLCARPSQDRTTVTEIAERIGWTRNHVVKVVHRLSQEGWLATQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   A ++ + +V++  E    +  C       C     C L  VL  A N F+
Sbjct: 61  RTGGLGLDPQARKLRLGNVIRTLEGDDCLINC---KDPPCNFGRGCPLIKVLNDAQNVFY 117

Query: 120 DVLTQYSIE 128
           + L  Y++E
Sbjct: 118 EALNAYTLE 126


>gi|164688544|ref|ZP_02212572.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
           16795]
 gi|164602957|gb|EDQ96422.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
           16795]
          Length = 157

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   ++ H+  P  I  IA    I E +L +I   L KA ++++VRG
Sbjct: 1   MKLSTKGRYGLKAMFELSLTHSKGPVSIKTIAAKQNIPEQYLEQIFSKLKKANLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R A +IT+ DV+   E    +++C    K  C    SC    V  K  +A  
Sbjct: 61  AQGGYLLSRKASEITVYDVLTVLEGPVSISDCLLD-KDSCENSDSCVTKLVWEKMRDAMD 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +V+   ++  +V N +    I
Sbjct: 120 NVMKSITLCDMVNNYNETHNI 140


>gi|295109801|emb|CBL23754.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
           A2-162]
          Length = 143

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A HN+     +  IA+   ISE +L  I+  L K   V+ +RG
Sbjct: 1   MKISTRGRYALRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116
           + GG RL +   + TI  +++ TE S     C   H   C    SC    +     K +N
Sbjct: 61  KGGGYRLAKTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEEFYKLIN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
            +FD +T   +E L+  +S +
Sbjct: 121 EYFDGIT---LEDLLEQKSDV 138


>gi|121997341|ref|YP_001002128.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588746|gb|ABM61326.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 150

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + + + TDYG+ +L   A         +Q+A A  + +  + K+++ LV AG++ + RG 
Sbjct: 2   LRINRETDYGVVILSAMARRPGERVNAAQLAGAHGLPQPMVSKVMKQLVHAGLLCSYRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVLRK 113
           +GG  L RP ++I++ +V++A E      EC  S    C  V  C        ++SV+R+
Sbjct: 62  KGGYGLARPPEEISVAEVIEALEGPIAFTECVESGTDTCTHVEDCNASAAWSRISSVVRQ 121

Query: 114 ALNA 117
           AL A
Sbjct: 122 ALAA 125


>gi|154503925|ref|ZP_02040985.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
 gi|153795524|gb|EDN77944.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
          Length = 156

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A H  + P  I+ IAE   ISE +L +++  L KAGI++++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQHGGEGPVSITSIAERQEISERYLEQLMSKLKKAGIIQSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +  +++++ +V++A E      EC     +  C    +C    V ++  ++ 
Sbjct: 61  AQGGYVLAKELEEVSVGEVLRALEGDLNPVECSGFLLEGGCQAADNCVTKYVWQRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              + + +++ LV    ++K+
Sbjct: 121 NQTVDEMNLKALVEVGENLKE 141


>gi|225026056|ref|ZP_03715248.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
 gi|224956618|gb|EEG37827.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
          Length = 136

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +RV++Y A  ND    I   +IAE   IS  +L  I+  L K  ++ + R
Sbjct: 1   MMVSSKGRYALRVMIYLA-QNDREELIPLKEIAENQNISMKYLEMIVSLLHKGNMLISGR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G++GG RL R   + TI  ++K TE++     C    K+ C   G C    + +K     
Sbjct: 60  GKKGGYRLARKPSEYTIGSILKLTEKTLAPVNCLEGGKVTCEKAGYCITLPMWQKLDGII 119

Query: 119 FDVLTQYSIECLVRNR 134
            D L   ++E L+  R
Sbjct: 120 DDYLETVTLEDLLEGR 135


>gi|254471092|ref|ZP_05084495.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
 gi|211960234|gb|EEA95431.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
          Length = 140

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M  A++ +    I +++EA       + K++Q L + G +++ RGR GG+ L      I 
Sbjct: 1   MLMAVNRNDKWTIDRLSEATNSGRPQVAKVVQILNRKGYIKSRRGRLGGLMLAHAPASIN 60

Query: 75  ILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           I  +++  E++F + ECFA S    CPL G C     L+ AL++F + L   ++  ++ N
Sbjct: 61  IGKLIRNVEDNFALVECFACSPSKPCPLEGVCRFRGKLKHALDSFMEELDAINLTQIIEN 120

Query: 134 RSSIK 138
              I+
Sbjct: 121 ADEIR 125


>gi|194333510|ref|YP_002015370.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           aestuarii DSM 271]
 gi|194311328|gb|ACF45723.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
           aestuarii DSM 271]
          Length = 137

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 2/106 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  ++Y A  +D     + ++A     S+ F+ K LQ L +AG+  +V+G
Sbjct: 2   LKVSRKFEYGLHAIIYLAGKSDDEIVTVKEMAAEIGFSQEFMAKALQKLKRAGLALSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            +GG +L +PA +IT+ DV +ATE    +  C +S +  C +V SC
Sbjct: 62  VKGGYKLGKPAAEITVADVGRATEGEPHLMRC-SSEEGSCEIVRSC 106


>gi|313682882|ref|YP_004060620.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155742|gb|ADR34420.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 134

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK ++Y +  L+  A    +P     +++   IS+ FL KILQ L + GI+ + +G 
Sbjct: 1   MLMTKASEYALLSLIVLA-KAGHPLDADTLSKELDISKSFLAKILQSLARQGILNSYKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRK---A 114
            GG  L R + +IT+L+V++A E +S  V  C  S + DCP     SCGL   L +    
Sbjct: 60  NGGFELARHSREITVLEVMEAAEGKSPAVFSCSPSQE-DCPSNKAMSCGLWPFLNRLQGK 118

Query: 115 LNAFFDVLTQYSI 127
           ++AF   LT  +I
Sbjct: 119 VDAFLGTLTLEAI 131


>gi|239627234|ref|ZP_04670265.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517380|gb|EEQ57246.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 133

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ +DY +R++   A+ +     I QI +   +   F +KIL+ L KAG+V   RG 
Sbjct: 1  MMITRESDYAVRMIR--ALKDGEQLTIGQICQKEQVPRQFAYKILKKLEKAGLVLIRRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L +  D +T+LDV++AT+E FF+  C 
Sbjct: 59 GGGCNLGQSLDVLTLLDVIRATDEEFFLNPCL 90


>gi|120404425|ref|YP_954254.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957243|gb|ABM14248.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 148

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  +       R++  QIA +   SE  + K +  LV+ G+VE  R
Sbjct: 1   MQLTRFTDLGLRAMMILSAGEFDDQRVTTRQIAASAGASENHIAKAVSRLVELGLVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C       CPL+  C L   +  A  AF
Sbjct: 61  GRVGGLSLTEAGRTASVGRLVRELEGDREVITCDGDSP--CPLLAGCRLRRAMAAAKEAF 118

Query: 119 FDVLTQYSIECLVRN 133
           +  L +Y++  L R 
Sbjct: 119 YAELDRYTVTDLARG 133


>gi|94984606|ref|YP_603970.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554887|gb|ABF44801.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 153

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  ++E   IS+ +L +I   L +AG +++VRG 
Sbjct: 1   MWVSTKAQYGLRALIEIGRRGGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA  I   +VV A E S     C     + C     CG   +  +   A  D
Sbjct: 61  HGGYRLARPASAINAYEVVTAMEGSIAPVSCVEEDHV-CDKGNVCGTLELWHRVDTALRD 119

Query: 121 VLTQYSIECLV 131
           VL   ++  L+
Sbjct: 120 VLGATTLADLI 130


>gi|297559632|ref|YP_003678606.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
 gi|296844080|gb|ADH66100.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 154

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R DY +R     A+ ++ P    Q+A A  I   FL  IL  L +AG+V + RG 
Sbjct: 1  MRLSARVDYALRAAAELAVADEGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA +I++ D+++A +
Sbjct: 61 VGGYWLARPAGEISLADIIRAVD 83


>gi|262279220|ref|ZP_06057005.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259571|gb|EEY78304.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 182

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G R
Sbjct: 3   YITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L R A +I+ LD+V A E    + EC         F     D    G C + +V+ 
Sbjct: 63  GGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNHAPPDWATSGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L  +++
Sbjct: 123 QAEKAMRDALGAHTL 137


>gi|29832495|ref|NP_827129.1| hypothetical protein SAV_5952 [Streptomyces avermitilis MA-4680]
 gi|29609614|dbj|BAC73664.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 166

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++A    +      K++  L   G++   RGR
Sbjct: 9   MRLLRSTDLALRVLMRLAVTGDSSPTTREVAADMDVPYTHAAKVVAELQHLGLITARRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+A E    V +C  S    CPL  +C L   LR+A  AFF 
Sbjct: 69  GGGLALMEAGRTASVGAVVRAFEGDGDVVDCEGSTP--CPLNSACRLRGALRRAQEAFFA 126

Query: 121 VLTQYSIECLV 131
            L   +++ +V
Sbjct: 127 SLDPLTVQDMV 137


>gi|145220261|ref|YP_001130970.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
          vibrioformis DSM 265]
 gi|145206425|gb|ABP37468.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
          phaeovibrioides DSM 265]
          Length = 148

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L K++DY +R L+      D       IAE   +   FL  +LQ L++ G+VE+  G RG
Sbjct: 4  LNKKSDYAVRALLALGAAGDGFLSARVIAEGQQMPYQFLRGLLQDLIRHGMVESREGARG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          G RL + AD+I +LD+++  +    V+EC    +I
Sbjct: 64 GFRLVKDADEIALLDIIEIFQGPVQVSECMFRKQI 98


>gi|154502552|ref|ZP_02039612.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
 gi|153796744|gb|EDN79164.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
          Length = 146

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG+R L+   IH N+ P  + Q+A    IS  +L ++   L KAGIV +V+G
Sbjct: 1   MKVSTRGRYGLRALVDMTIHSNNAPVSLVQVANRQKISLNYLEQVFGTLRKAGIVVSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG +L R A+ IT+ +V++A E +F + +     + D 
Sbjct: 61  AGGGYKLARDAESITVKEVLEALEGTFSIIDRIPGEEQDA 100


>gi|251796973|ref|YP_003011704.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247544599|gb|ACT01618.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 127

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  + +  A   D P  + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG R     + I+ LDV++A E +  + EC  S   +C
Sbjct: 61  ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPEC 100


>gi|292669568|ref|ZP_06602994.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
 gi|292648777|gb|EFF66749.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
          Length = 162

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+H  +    +  IA+   ISE +L +++ PL +AG+VE+VRG
Sbjct: 16  MKLSTKGRYSVTALYELALHYGEGVVPLKTIAKTQGISENYLEQLMAPLRRAGLVESVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKID--CPLVGSCGLTSVLRKAL 115
            +GG  L  P +++TI  ++ A E    + +C   ++  +D  C   G+C    +  +  
Sbjct: 76  AQGGYTLALPPEEVTIGQIITAVEGPIALVDCLLTSAEAVDQSCVRAGNCVTRQIWEEVC 135

Query: 116 NAFFDVLTQYSIECLVR 132
           +   +VL   ++  L+R
Sbjct: 136 DNINNVLNNIALSDLMR 152


>gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
          DSM 6192]
 gi|306532678|gb|ADN02212.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
          DSM 6192]
          Length = 155

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +  Y IR ++  A+  +  P  I +IAE   IS  FL +I   L KAGI+++VRG
Sbjct: 1  MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKAGIIDSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  + RP + ITI D+  A +E   +  C
Sbjct: 61 PGGGFLISRPLESITIKDIFDAVDEGLGITPC 92


>gi|237745942|ref|ZP_04576422.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229377293|gb|EEO27384.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 156

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  T Y IR++    + N  P  I+ ++E   IS+  +  +   L +  I E + G 
Sbjct: 1   MKLSTHTRYAIRIIFELHLANS-PVSIAALSEQTNISQKVVENVHAILKQNRITEAIIGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RLC+P  +I++ D++   +E      CF +   DCP    C   SV +        
Sbjct: 60  RGGIRLCKPLSEISLGDMIDLFDEGVRFVVCFGNKSNDCPRQRVCETRSVWKTISGKIRQ 119

Query: 121 VLTQYSIECLV 131
            L + S+E ++
Sbjct: 120 ELGKVSLESIL 130


>gi|293375225|ref|ZP_06621510.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
           PC909]
 gi|325845593|ref|ZP_08168879.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
           HGF1]
 gi|292646161|gb|EFF64186.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
           PC909]
 gi|325488377|gb|EGC90800.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
           HGF1]
          Length = 131

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-G 59
           M L+K +DY  R L+Y A H D    + +++     SE  + K++  L K   V +++  
Sbjct: 1   MQLSKFSDYSFRALIYLAQHRDQLCTVEELSMNLNTSEQHMKKVIHKLGKTPYVTSIKGR 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             G    C P  +I + +++K TE++  + ECF +    CPL+ S C L S+   AL  F
Sbjct: 61  GGGLRLGCEPQ-EINLGEILKITEDNLNILECF-NKSAGCPLLSSGCKLKSITSDALQKF 118

Query: 119 FDVLTQYSIECLV 131
            +  + Y++E L+
Sbjct: 119 IEEFSNYTLEDLL 131


>gi|197106347|ref|YP_002131724.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
 gi|196479767|gb|ACG79295.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
          Length = 145

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R+ Y +R L++ A   D  P  I++IAEA      FL  IL  L +  ++ + RGR 
Sbjct: 2   LSQRSRYALRALVHLAGRTDGRPAAIAEIAEAAATPRKFLEAILLELKRRQLLVSTRGRF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I+  DV++A +    +A C +         CP V  C +   L KA +A
Sbjct: 62  GGYRLARPASEISFADVIRALDGPLALAPCASKTAYRPCETCPTVEDCPVHPALAKARDA 121

Query: 118 FFDVLTQYSIE 128
              VL  +++E
Sbjct: 122 VAAVLETWTLE 132


>gi|152985752|ref|YP_001349321.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960910|gb|ABR82935.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 174

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++ A    +   + +  +AE   +    L K+   L KAG+V    G RGG R
Sbjct: 9   EYGIHCLLFLADEKGDSRESSVRALAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA++I++LDVV+A +    + EC         F  +        +C + +V+  A  
Sbjct: 69  LARPANEISVLDVVRAIDGDKSIFECREIRERCALFEGNPPSWATRNTCSIHAVMLTAQK 128

Query: 117 AFFDVLTQYSIECLVR 132
              + L Q +I  LVR
Sbjct: 129 RMEEALAQQTILDLVR 144


>gi|49081590|gb|AAT50195.1| PA2692 [synthetic construct]
          Length = 175

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++ A    +   + +  +AE   +    L K+   L KAG+V    G RGG R
Sbjct: 9   EYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA++I++LDVV+A +    + EC         F  +        +C + +V+  A  
Sbjct: 69  LARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIHAVMLTAQK 128

Query: 117 AFFDVLTQYSIECLVR 132
              + L Q +I  LVR
Sbjct: 129 RMEEALAQQTILDLVR 144


>gi|302560986|ref|ZP_07313328.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
 gi|302478604|gb|EFL41697.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
          Length = 160

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++AEA  +      K++  L   G++   RGR
Sbjct: 13  MRLLRSTDLALRVLMRLAVAGDSSPTTREVAEAMDVPYTHAAKVVAELQHMGLLTARRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GG+ L       ++  +V++ E    V +C  +     CPL  +C L   LR+A  AFF
Sbjct: 73  GGGLSLTEDGRAASVGALVRSFEGDGDVVDCEGTATSPACPLSSACRLRGALRRAQEAFF 132

Query: 120 DVLTQYSIECLVRN 133
             L   ++  +V +
Sbjct: 133 ATLDPVTVADIVTD 146


>gi|15597888|ref|NP_251382.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102215|ref|ZP_01366133.1| hypothetical protein PaerPA_01003266 [Pseudomonas aeruginosa PACS2]
 gi|116050677|ref|YP_790503.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891147|ref|YP_002440013.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235672|ref|ZP_04928995.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
 gi|254241118|ref|ZP_04934440.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
 gi|296388842|ref|ZP_06878317.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313107747|ref|ZP_07793927.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948765|gb|AAG06080.1|AE004697_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585898|gb|ABJ11913.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167603|gb|EAZ53114.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
 gi|126194496|gb|EAZ58559.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
 gi|218771372|emb|CAW27139.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310880429|gb|EFQ39023.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 174

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++ A    +   + +  +AE   +    L K+   L KAG+V    G RGG R
Sbjct: 9   EYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA++I++LDVV+A +    + EC         F  +        +C + +V+  A  
Sbjct: 69  LARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIHAVMLTAQK 128

Query: 117 AFFDVLTQYSIECLVR 132
              + L Q +I  LVR
Sbjct: 129 RMEEALAQQTILDLVR 144


>gi|269961409|ref|ZP_06175773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833786|gb|EEZ87881.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 141

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  +    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKEELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+  E    V  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLLKAPKEITVGGVVRDLEPLDLV-NCSVEF---CHITPACRLKEKLAKAKMAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +IE L+ + S +
Sbjct: 117 AELDGCTIEELLSDNSEL 134


>gi|139438731|ref|ZP_01772215.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
           25986]
 gi|133775811|gb|EBA39631.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
           25986]
          Length = 189

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A   +    +   AE   +   F   I   LV+AGIVE++RG 
Sbjct: 29  MDISRKTDYALRMLAMLAEDPECLLSVRTAAEEVNVPYSFARSIQHGLVQAGIVESLRGV 88

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D +TI  VV+A +    + +C A    DC  +G+C    +   A     D
Sbjct: 89  HGGMRLKVSPDDVTIRQVVEAVQGPMVMNDCTAPDG-DCARMGACCYHPLWAGAQALMRD 147

Query: 121 VLTQYSIECLVRNR 134
            L   S+  +V +R
Sbjct: 148 YLDSVSLGDIVAHR 161


>gi|269836430|ref|YP_003318658.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785693|gb|ACZ37836.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 143

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R +YG+R ++  A ++   P  ++ IA    +   +L +++ PL +AG+V + RG
Sbjct: 1   MKVSTRGEYGMRAMVSLARMYGQGPVPLAAIASDSAVPAAYLEQLMGPLRRAGLVTSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSV---LRK 113
             GG  L RP  ++ + +V +  E       C +    D   CP++  C   +V   +R 
Sbjct: 61  AHGGYELARPPAEVRVGEVYRVMEGPIAPMACVSEDSGDEDLCPIIDGCATRAVWIKVRD 120

Query: 114 ALNAFFDVLT 123
           ++ A  D  T
Sbjct: 121 SIAAALDSTT 130


>gi|226324474|ref|ZP_03799992.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
 gi|225206922|gb|EEG89276.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
          Length = 148

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M+ +K++ YG+R L+  ++++   +  ++ IAE   IS  +L ++   L KAGI+++V+G
Sbjct: 1  MNFSKKSRYGLRALIDLSVYSKESHVALAAIAERNSISPQYLEQVFAALRKAGIIKSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L +PA +I++ ++++A E  + + E
Sbjct: 61 PQGGYLLAKPATKISVAEILRALEGDYLIEE 91


>gi|312126489|ref|YP_003991363.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776508|gb|ADQ05994.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 137

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT+ +DY +R++++ +           I+E   I + FL KI + L+KAGI+E+ RG+
Sbjct: 1  MRLTQASDYALRIVLHLSKKKGMVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L +  + IT+ DV+ A E +  +  C
Sbjct: 61 NGGYILAKNPEDITMKDVILAVEGTLALNRC 91


>gi|262278963|ref|ZP_06056748.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259314|gb|EEY78047.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 157

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKANCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + S+  L+ +R +++ +
Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138


>gi|330992748|ref|ZP_08316692.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760226|gb|EGG76726.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 151

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ RTDY  RVL++ A + D    I  I+    IS   L K++  L   G+V   RGR
Sbjct: 5   MRLSLRTDYAFRVLIHLAANPDTRVTIRAISTLHRISHNHLMKVVHHLCLCGLVTGTRGR 64

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L  P   I +  V++  E +  F+A    S         +  L  +  +A++AF 
Sbjct: 65  TGGIHLAMPPGHIMVGHVIRVMETQGEFMAGHAPSGDSRFLAADARPLRHLTARAMDAFM 124

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
            VL   SI+ LV +   ++ +  AG
Sbjct: 125 AVLEDMSIQDLVGSPELVRSVCAAG 149


>gi|134101075|ref|YP_001106736.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004105|ref|ZP_06562078.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913698|emb|CAM03811.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 171

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 1   MHLTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L++  ++G+    L+  A  +   +R S +AE   + E +L K L  L +AG++    
Sbjct: 1   MKLSQGVEWGLHCTALIAQAPEDTALSRRS-LAEHHGLPEAYLAKHLNALTRAGLLTATP 59

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPL---VGSCGLTSVLR 112
           G RGG RL RPA++IT+LDV+ A E     F   E         P       CG+ +V+ 
Sbjct: 60  GPRGGFRLARPAERITVLDVLDAVEGDAAPFVCQEIRQRGTGAVPPEKCTSPCGIAAVMA 119

Query: 113 KALNAFFDVLTQYSIECLV---------RNRSSIKK 139
           +A  A+ D L + +I  LV         RNR    K
Sbjct: 120 QAHEAWRDTLRRTTIADLVGQVPDDIRARNRERFSK 155


>gi|330821657|ref|YP_004350519.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373652|gb|AEA65007.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 177

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 2   HLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           H++   +YG+  L+Y A          +  +AE   +   FL K+   L KAG+V    G
Sbjct: 3   HISTGVEYGLHCLLYLAEPASGMREASVRDLAELQGVPLDFLAKLFTKLHKAGLVIATEG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
            +GG  L RPADQI++LDVV A +    + EC         F   K      G C + SV
Sbjct: 63  AKGGFALARPADQISVLDVVSAIDGDKSLFECREVRERCAVFEGTKPAWATSGVCAIHSV 122

Query: 111 LRKALNAFFDVLTQYSIECLVRNRSS 136
           +++A     + L   S+  +    SS
Sbjct: 123 MQQAEKKMRESLASQSLADIAERFSS 148


>gi|210608481|ref|ZP_03287857.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
 gi|210153057|gb|EEA84063.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
          Length = 144

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  A H N  P  ++ IA+   +S  +L ++   L KAGIV++++G
Sbjct: 1  MKISTKGRYGLRALVDLAGHDNGEPIALASIAQRQKLSLNYLEQVFSVLRKAGIVKSLKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG RL + AD IT+ +V++  E  F + + +A  K
Sbjct: 61 VNGGYRLAKKADDITVKEVLEVLEGKFSIVDEYAQEK 97


>gi|146295458|ref|YP_001179229.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409034|gb|ABP66038.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 137

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT+ +DY +R++++ +           I+E   I + FL KI + L+KAGI+E+ RG+
Sbjct: 1  MRLTQASDYALRIVLHLSKKKGVVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L +  + IT+ DV+ A E +  +  C
Sbjct: 61 NGGYVLAKNPEDITMKDVILAVEGTLALNRC 91


>gi|117164556|emb|CAJ88102.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
          23877]
          Length = 152

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  L   A  +D P +   IA+A  I   FL  IL  + + G+V + RG
Sbjct: 1  MRISARADYAVRAALQLAASRDDGPLKAEAIADAQDIPHKFLEGILNDMRRGGLVLSQRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL +PA+ I+I DV++  E
Sbjct: 61 GNGGYRLAKPAESISIADVIRTVE 84


>gi|332981928|ref|YP_004463369.1| BadM/Rrf2 family transcriptional regulator [Mahella australiensis
           50-1 BON]
 gi|332699606|gb|AEE96547.1| transcriptional regulator, BadM/Rrf2 family [Mahella australiensis
           50-1 BON]
          Length = 149

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 7/129 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  ++  A+ + + P  +  +AE   ISE +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLTAMLDLALNYGEEPVALKNVAERQGISEPYLEQLIAGLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSV----LRKA 114
            +GG  L  P D+IT+ DV++  E      +C   +  + C     C +T +    +R +
Sbjct: 61  AQGGYILAYPPDKITVGDVMRVLEGPLAPVDCVIENEPVSCEKADHC-VTRIIWEKIRDS 119

Query: 115 LNAFFDVLT 123
           +N   D +T
Sbjct: 120 INQVVDSIT 128


>gi|118444398|ref|YP_878357.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           novyi NT]
 gi|118134854|gb|ABK61898.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           novyi NT]
          Length = 144

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 12/129 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI + + P  I  IA+   ISEL+L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYGESPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115
            +GG  L +    I++ D++   E    ++ C  + + D    CP       T +L K +
Sbjct: 61  AQGGYVLNKHPKDISVSDIINVLEGPIEISSCVDTGECDNMNVCP-------TRLLWKKI 113

Query: 116 NAFFDVLTQ 124
               D +T+
Sbjct: 114 KKSIDKVTE 122


>gi|302866552|ref|YP_003835189.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569411|gb|ADL45613.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
          Length = 145

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD  +R+ M  A     P R  + ++A    +    + K++Q L + G++ T+R
Sbjct: 1   MRLNRSTDMALRIAMLTAAS---PVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIR 57

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GGV     A  IT+  VV+A E    V +C    +  CPLV  C L   LR+A  AF
Sbjct: 58  GRSGGVAFAEHAGDITVGGVVRAFEGDGEVVDC---AQPVCPLVAECRLRGELRRAQAAF 114

Query: 119 FDVLTQYSIECLV 131
             VL    +  LV
Sbjct: 115 LAVLDGVRLGDLV 127


>gi|253577980|ref|ZP_04855252.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850298|gb|EES78256.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 135

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +    +S I E   I+  F +KIL+ L KA IV+  RG 
Sbjct: 1   MFITRECDYAVRVVR--ALWGESRLSVSDICEKEAITAPFAYKILKKLQKAEIVKGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R  D++T+ +V  A +   F+ EC    K +C   G  GL  ++ + L +  D
Sbjct: 59  HGGYSLNRGLDELTLYEVYSAIDPDMFIIECL-DPKYNCVRDGQDGLPCLVHRELLSVQD 117

Query: 121 VL 122
            L
Sbjct: 118 EL 119


>gi|153815582|ref|ZP_01968250.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
 gi|317502129|ref|ZP_07960308.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847013|gb|EDK23931.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
 gi|316896474|gb|EFV18566.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 140

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 8/104 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L + TDY +R++ + +      NRI    +I+EA   S  ++  IL+ L K G+VE +
Sbjct: 1   MQLNRTTDYVVRIVYFLS----NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVI 56

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           RG +GG RL +  D I++ DV+K  E++  + +C    + +C L
Sbjct: 57  RGVKGGFRLKKRPDAISLFDVIKIMEDTICINQCLNEEE-NCNL 99


>gi|331090359|ref|ZP_08339241.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401244|gb|EGG80834.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 141

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 8/104 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L + TDY +R++ + +      NRI    +I+EA   S  ++  IL+ L K G+VE +
Sbjct: 1   MQLNRTTDYVVRIVYFLS----NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVI 56

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           RG +GG RL +  D I++ DV+K  E++  + +C    + +C L
Sbjct: 57  RGVKGGFRLKKRPDAISLFDVIKIMEDTICINQCLNEEE-NCNL 99


>gi|163786651|ref|ZP_02181099.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878511|gb|EDP72567.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 136

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L+Y A      P +IS+I+++  IS  FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALVYLAKQKKRDPVQISEISKSENISRKFLESILLTLRKNGILGSKKGKN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  ++I +  +++  E    +  C    F     DCP   +C + +V+ K  + 
Sbjct: 62  GGYYLLKEPNEIPMTSIMRLLEGPIAMVPCVSLNFYEKCDDCPDENACAVHNVMLKVRDN 121

Query: 118 FFDVLTQYSI 127
             D+    ++
Sbjct: 122 TLDIFRNTTL 131


>gi|291551296|emb|CBL27558.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus torques
           L2-14]
          Length = 142

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  +  + D    + +IA    ISE +L  IL+ LV  G +  +RG
Sbjct: 1   MIISTRGRYALRVMIDLSQQDPDSYTPLKEIAARQEISEKYLENILKSLVTQGFILGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   + T+  ++ ATE S     C   H  +C   G C    +  K  N   
Sbjct: 61  KGGGYRLTKSPGEYTLASILHATEGSLAAVACLEDHAPECARAGQCPTRPIWEKLDNLIE 120

Query: 120 DVL 122
           D L
Sbjct: 121 DYL 123


>gi|237737739|ref|ZP_04568220.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419619|gb|EEO34666.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
          Length = 140

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  YG++ L+Y A  +      RI +I++   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTRVRYGLKALVYIADKSSENKLVRIKEISDEQGISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C  S  HK  C   G+C    +  K  N
Sbjct: 61  GPNGGYRLAKEPKEITLHQLYKILDEEEKVIDCNESEEHKAVCS-DGTCSGKCIWGKLDN 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + +++  ++N+  I
Sbjct: 120 AMTKILEETTLDEFIKNKDMI 140


>gi|323702206|ref|ZP_08113873.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532893|gb|EGB22765.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 135

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 14/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54
           M L + TDY  R ++Y +     P    ++ EA  I+E       FL KIL+ L ++GIV
Sbjct: 1   MRLNQATDYAFRAVLYLS---RLP--AGEVVEAKTIAEDEQIPIRFLLKILRLLSQSGIV 55

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLR 112
           E++RG  GG +L +   +ITI DVV+A E    V  C   H  +C   G+  C L   L 
Sbjct: 56  ESLRGVSGGYKLAKKPKEITIKDVVEAVEGPIEVNRCLI-HPAECNKNGTGFCPLHKALF 114

Query: 113 KALNAFFDVLTQYSIECLVRN 133
                    L  Y  E L ++
Sbjct: 115 SIRQVLNRELASYDFETLSKS 135


>gi|253578507|ref|ZP_04855779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850825|gb|EES78783.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 158

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG++ L+   +H++     +  IAE   IS  +L +++  L KAG+V++ RG
Sbjct: 1  MKLSTRARYGLKALIDLGLHSENEAISLQSIAERQDISTSYLEQLMAMLKKAGLVKSSRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L +PAD+I++ +V++  E S   A C
Sbjct: 61 AYGGYQLGKPADEISVGEVLRVLEGSLEAAAC 92


>gi|294793415|ref|ZP_06758560.1| Rrf2 family protein [Veillonella sp. 6_1_27]
 gi|294455846|gb|EFG24211.1| Rrf2 family protein [Veillonella sp. 6_1_27]
          Length = 143

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+          + AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKVTGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG  L R   +I++LDV++A E   ++  C          VGSC
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99


>gi|17232043|ref|NP_488591.1| hypothetical protein alr4551 [Nostoc sp. PCC 7120]
 gi|17133687|dbj|BAB76250.1| alr4551 [Nostoc sp. PCC 7120]
          Length = 145

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H D   P +I QIA    I + +L ++L  L + GI+ + R
Sbjct: 1   MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           G RGG  L R   +I+I ++++  E  E     E   S  +D  ++       + ++A  
Sbjct: 61  GSRGGYFLAREPRKISIFEILECLEGLEVKTSEENLKSQTLDASVI-----EEIWQEARQ 115

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
           A   VL +YS++ L   R S +++
Sbjct: 116 AANSVLKKYSLQDLCEKRDSRRQL 139


>gi|27364702|ref|NP_760230.1| transcriptional repressor NsrR [Vibrio vulnificus CMCP6]
 gi|37681247|ref|NP_935856.1| transcriptional repressor NsrR [Vibrio vulnificus YJ016]
 gi|320155095|ref|YP_004187474.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           MO6-24/O]
 gi|81448739|sp|Q8DCU1|NSRR_VIBVU RecName: Full=HTH-type transcriptional repressor nsrR
 gi|81859821|sp|Q7MH10|NSRR_VIBVY RecName: Full=HTH-type transcriptional repressor nsrR
 gi|27360847|gb|AAO09757.1| Nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           CMCP6]
 gi|37199998|dbj|BAC95827.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319930407|gb|ADV85271.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           MO6-24/O]
          Length = 141

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A + ++    I+ + E   +S   + K++  L +   ++TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPDNEQTNITDVTELFGVSRNHMVKVINRLGQLNYIQTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPA  I + +VV+  E    V  C       C +  +C L   L +A  AF 
Sbjct: 61  KNGGIRLNRPAKTILVGEVVRDLEPLDLV-NCSVEF---CHITPACRLKERLYRAKLAFL 116

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   SI  L+ + + +
Sbjct: 117 AELDDCSIAELLDDNAEL 134


>gi|210631991|ref|ZP_03297156.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
 gi|210159793|gb|EEA90764.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
          Length = 176

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A   D    +   AE+  +   F   I   LV+AGI+E++RG 
Sbjct: 16  MDISRKTDYALRMLSMLAEGEDCLLSVRTAAESVDVPYSFARSIQHGLVQAGIIESLRGV 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL      +TI  +V+A +    + +C A +   CP +  C    +   A      
Sbjct: 76  RGGMRLKVDPKDVTIRQIVEAVQGPLVMNDCTAENGA-CPRMDGCCYHPLWVGAQELLRS 134

Query: 121 VLTQYSIECLVRNR 134
            L   +++ +V NR
Sbjct: 135 YLDSITLDDIVNNR 148


>gi|332975848|gb|EGK12726.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437]
          Length = 210

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           +  +K TDY +  L++ A H+++   I   +++ +  +SE +L KI+  L + GIV  V 
Sbjct: 51  IQFSKSTDYALHALIHLA-HSEHRRNIGIKELSASLGVSESYLSKIMSKLRRDGIVRAVP 109

Query: 59  GRRGGVRLCRPADQITILDVVKATE--ESFF-------------VAECFASHKIDCPLVG 103
           G  GG  L RPA QIT L+V+   E  +S F               E  A    DC    
Sbjct: 110 GVNGGYELARPAGQITFLEVIHVIEGRQSLFECSTLNSKQHRLLAEERAADRDRDCQGNS 169

Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131
            C +  V+  A    +  L +++I+ ++
Sbjct: 170 ECLVKKVMDGAEQHLYQYLREHTIQSVL 197


>gi|254384664|ref|ZP_05000003.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343548|gb|EDX24514.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 163

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ + D P     +A    +      K++  L   G++E  RG
Sbjct: 13  MRLTRFTDLALRVLMRLAVADADLPT-TRDVAATMEVPYTHSAKVVARLRHLGLIEARRG 71

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  VV+  E +  V +C     + CPL G+C L   LR A  AFF
Sbjct: 72  RGGGLALTAAGRAASVGGVVRELEGAGDVVDC--DGAVPCPLRGACVLRGALRGAQEAFF 129

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 130 AALDPLTVNDLV 141


>gi|157363012|ref|YP_001469779.1| BadM/Rrf2 family transcriptional regulator [Thermotoga lettingae
          TMO]
 gi|157313616|gb|ABV32715.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga lettingae
          TMO]
          Length = 134

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +++Y  ++L+  A    + P  +S I     + + F  KI+  L +AGI+E+ RG
Sbjct: 1  MGITIKSEYAFKILLQIANCQANEPVSLSLILTDVNVPKEFAEKIMVSLKEAGIIESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          R+GG RL + ADQIT L++V+A ++   + +C
Sbjct: 61 RKGGYRLTKSADQITALEIVRAVDDPDKLIKC 92


>gi|206900600|ref|YP_002250996.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
 gi|206739703|gb|ACI18761.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
          Length = 138

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ R+ YG+R L+Y A +   D P  + +IAEA  I   +L +I++ L +   V    
Sbjct: 1   MKLSTRSRYGLRALIYIAKNQKEDSPVSVRKIAEAEEIPLRYLERIMRILSQKNYVRAEV 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + I ILDVV+A E    + +C   H + C  + SC    +  +   + 
Sbjct: 61  GAEGGYYLNISPENIRILDVVEALEGRINLVDCL--HGVKCKRMPSCPTRPLWIEMTKSL 118

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            + L +Y++   ++    IK
Sbjct: 119 KETLAKYTLADFLKEEEKIK 138


>gi|315186439|gb|EFU20199.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6578]
          Length = 155

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  Y IR ++  A+  +  P  I +IAE   IS  FL +I   L K GI+++VRG
Sbjct: 1   MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKVGIIDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  L RP + ITI D+  A +E   +  C        P
Sbjct: 61  PGGGFVLSRPLESITIKDIFDAVDEGLGITPCTEEEGKSGP 101


>gi|315502962|ref|YP_004081849.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|315409581|gb|ADU07698.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 145

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD  +R+ M  A     P R  + ++A    +    + K++Q L + G++ T+R
Sbjct: 1   MRLNRSTDMALRIAMLTAAS---PVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIR 57

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GGV     A  IT+  VV+A E    V +C    +  CPLV  C L   LR+A  AF
Sbjct: 58  GRSGGVAFAEHAGDITVGRVVRAFEGDGEVVDC---AQPVCPLVAECRLRGELRRAQAAF 114

Query: 119 FDVLTQYSIECLV 131
             VL    +  LV
Sbjct: 115 LAVLDGVRLGDLV 127


>gi|330466710|ref|YP_004404453.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809681|gb|AEB43853.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 146

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +R+ M  A        + ++A+   +    + K++Q L   G++ T+RGR
Sbjct: 1   MKLNRSTDMAMRIAMLTAASGRR-TTVDELAQRLALPRNHVAKVVQRLQHLGVLVTIRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV         T+  VV+A E    V +C A     CPL  +C L   LR+A  AF  
Sbjct: 60  SGGVAFAADGATYTVGQVVRAFEGDGEVVDCEAPA---CPLRAACRLRIELRRAQEAFLA 116

Query: 121 VLTQYSIECLV 131
           VL + S+  LV
Sbjct: 117 VLDRVSLADLV 127


>gi|294629169|ref|ZP_06707729.1| Rrf2 family protein [Streptomyces sp. e14]
 gi|292832502|gb|EFF90851.1| Rrf2 family protein [Streptomyces sp. e14]
          Length = 155

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVET 56
          M ++ R DY +R ++  A+ H D P    +   IA    IS  FL  IL  L +AG+V +
Sbjct: 1  MRISARADYAVRAVLELAVRHGDAPEAPVKAETIAAEQGISHKFLEGILGDLRRAGVVTS 60

Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83
           RG  GG  L RPA  IT+ DV++A +
Sbjct: 61 RRGGGGGYALARPASAITVADVIRAVD 87


>gi|218134234|ref|ZP_03463038.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991609|gb|EEC57615.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
           43243]
          Length = 144

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A++N+  P R+  I++   IS+ +L +I+  L KAG V ++RG
Sbjct: 1   MKISTRGRYALRMMLDLAVNNNGEPIRLKDISKRQGISDKYLEQIISILNKAGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
            +GG  L R   + T+  +++ TE S     C      DC     C +T +L + LN A 
Sbjct: 61  PQGGYMLNREPKEYTVGMILRLTEGSLAPVACLDYEPNDCERRNEC-VTLILWEKLNDAI 119

Query: 119 FDVLTQYSIECLVR 132
             V+   +++ LV+
Sbjct: 120 KSVVDNITLQDLVQ 133


>gi|282849988|ref|ZP_06259370.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|282580177|gb|EFB85578.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
          Length = 143

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+          + AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG  L R   +I++LDV++A E   ++  C          VGSC
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99


>gi|23015106|ref|ZP_00054893.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 128

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TD+ IR+L+Y + H D    + ++AE   IS   L KI++ L   G ++TVRG+
Sbjct: 1   MKITQFTDFSIRLLIYLSRHRDRVVTVREVAEYYGISAEHLKKIVRSLADLGHLQTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I I  + +  +E+  +  C       CP +  C L  ++  AL AF  
Sbjct: 61  HGGLRLAREPRDIDIGRLFR-QQENLALLPCHEPCD-GCP-IDDCRLRGLVDNALAAFLA 117

Query: 121 VLTQYSI 127
           V    S+
Sbjct: 118 VFDGKSL 124


>gi|269797540|ref|YP_003311440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Veillonella parvula DSM 2008]
 gi|269094169|gb|ACZ24160.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
           DSM 2008]
          Length = 143

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+          + AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG  L R   +I++LDV++A E   ++  C          VGSC
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99


>gi|239932920|ref|ZP_04689873.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 152

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  L   A   D P +   I++A  I   FL  IL  + + G+V + RG
Sbjct: 1  MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL +PA+ ITI DV++  +
Sbjct: 61 GNGGYRLAKPAESITIADVIRTVD 84


>gi|226197420|ref|ZP_03792997.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|225930799|gb|EEH26809.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 142

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I +I++A  IS+  L K++Q L + G +ETVRGR GG+RL   +  +T+ +VV+ TE  F
Sbjct: 4   IQEISDAYGISKNHLMKVVQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTENDF 63

Query: 87  FVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
            +  CFA    SH+  C +  +C L  V   A  AFF  L +++I  L +  S +  +  
Sbjct: 64  ALVGCFAGESESHR-SCVIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATLLG 122


>gi|313682502|ref|YP_004060240.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155362|gb|ADR34040.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 141

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           RI +I+E+  +   FL K LQ LV AGI+ ++RG  GGV L +PA +IT+L ++ A + S
Sbjct: 26  RIQEISESLELPYHFLSKSLQKLVHAGILVSLRGASGGVSLSKPASEITLLSIIDAVDGS 85

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
            F   C      DC     C        AL+A +DV  Q  +E
Sbjct: 86  VFFDTCVLGIG-DCEAEKPC--------ALHAQWDVWRQEMLE 119


>gi|302562103|ref|ZP_07314445.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
 gi|302479721|gb|EFL42814.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
          Length = 151

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L K G+V + RG 
Sbjct: 8   MHISAKADYATRALLELAREPARPLTCEAIASSQQIPFRFLKSVVGELRKGGLVRSQRGC 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            GG  L RPA++IT+LD+ +A +         +   +D P   + GL  V R+
Sbjct: 68  EGGYWLGRPAEEITLLDISRAVDGELLTLRGESPATLDYPGA-AAGLPDVWRR 119


>gi|291441270|ref|ZP_06580660.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291344165|gb|EFE71121.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 154

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  L   A   D P +   I++A  I   FL  IL  + + G+V + RG
Sbjct: 3  MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 62

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL +PA+ ITI DV++  +
Sbjct: 63 GNGGYRLAKPAESITIADVIRTVD 86


>gi|294102885|ref|YP_003554743.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
 gi|293617865|gb|ADE58019.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
          Length = 141

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           ++AEA  +SE  L K+ Q LV+ G V + RG  GG  L RPA+ I++LD+ +A E     
Sbjct: 32  EMAEAINVSEAHLAKVFQRLVRCGFVTSSRGPGGGFELARPAESISLLDIYEAIEGQTDG 91

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
             C   H+ +CP   +C    +L+K      D L + ++  L R  
Sbjct: 92  GYCLL-HQKECPFR-TCIFGDMLKKMTKEIRDFLREKNLSELARGE 135


>gi|114321038|ref|YP_742721.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114227432|gb|ABI57231.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
          ehrlichii MLHE-1]
          Length = 158

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  +M  A+H    P  ++ I+E+  IS  +L ++   L K  +V  VRG
Sbjct: 1  MKLSTKGRYAVTAMMDLALHEGQGPVTLADISESQGISLSYLEQLFARLRKHSLVSGVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL +PADQITI D++ A +E+     C
Sbjct: 61 PGGGYRLAQPADQITIADIITAVDENVDATRC 92


>gi|325122066|gb|ADY81589.1| hypothetical protein BDGL_001003 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 157

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + S+  L+ +R +++ +
Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138


>gi|299770352|ref|YP_003732378.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter sp. DR1]
 gi|298700440|gb|ADI91005.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter sp. DR1]
          Length = 157

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + S+  L+ +R +++ +
Sbjct: 119 DYLAKISLADLI-SRDNVQTV 138


>gi|293608203|ref|ZP_06690506.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828776|gb|EFF87138.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 161

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 5   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 65  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 122

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + S+  L+ +R +++ +
Sbjct: 123 DYLAKISLADLI-SRDNVQTV 142


>gi|225570988|ref|ZP_03780011.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
          15053]
 gi|225160450|gb|EEG73069.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
          15053]
          Length = 129

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT+  DY IR+L   A+ +   + +  I +   I E F +KI++ L KAGIVE  RG 
Sbjct: 1  MLLTRENDYAIRMLR--AMRDGQKHTMKDICQEEEIPEAFAYKIVRKLQKAGIVEVERGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG R+ R   ++T+ DVV A +E   +  C 
Sbjct: 59 AGGCRMGRSLTELTLYDVVAAVDEEPVIMPCL 90


>gi|253682230|ref|ZP_04863027.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum D str. 1873]
 gi|253561942|gb|EES91394.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum D str. 1873]
          Length = 144

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI +++ P  I  IA    ISEL+L ++  PL KA ++++VRG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYSESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ D++   E    ++ C  S   +C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLSKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPSRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +  +   +K
Sbjct: 119 EVTKSITLQDMANDYKRLK 137


>gi|75908723|ref|YP_323019.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75702448|gb|ABA22124.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
           ATCC 29413]
          Length = 145

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H D   P +I QIA    I + +L ++L  L + GI+ + R
Sbjct: 1   MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           G RGG  L R   +I+I ++++  E  E     E   S  +D  ++       + ++A  
Sbjct: 61  GSRGGYFLAREPRKISIFEILECLEGLEVKTSEENLKSQTLDGSVI-----EEIWQEARQ 115

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
           A   VL +YS++ L   R S +++
Sbjct: 116 AANSVLKKYSLQDLCEKRDSRRQL 139


>gi|269839251|ref|YP_003323943.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Thermobaculum terrenum ATCC BAA-798]
 gi|269790981|gb|ACZ43121.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum
          terrenum ATCC BAA-798]
          Length = 153

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T R DY +R  +  A     P +  QI+EA  I   FL  IL  L +AG+V T RG+
Sbjct: 1  MHITARADYALRAAIEMAASWPQPLKGEQISEAQDIPIKFLESILLDLKRAGLVRTQRGQ 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L R   +I++ D+++A E
Sbjct: 61 AGGYWLGREPAEISLADIIRAVE 83


>gi|268317559|ref|YP_003291278.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
          DSM 4252]
 gi|262335093|gb|ACY48890.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
          DSM 4252]
          Length = 142

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 8  DYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +YG+R ++Y A +++D    I +I E   IS  FL KI Q L +AG+++++RG  GGV  
Sbjct: 7  EYGLRAVLYLASLNHDGYVSIREIGERLNISVPFLTKIFQKLTQAGLMQSLRGPSGGVMF 66

Query: 67 CRPADQITILDVVKATEESFFVAEC 91
           R  ++IT+ DV+ A +      EC
Sbjct: 67 ARSPEEITLFDVIVAIDGPDLFTEC 91


>gi|296140570|ref|YP_003647813.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Tsukamurella paurometabola DSM 20162]
 gi|296028704|gb|ADG79474.1| transcriptional regulator, BadM/Rrf2 family [Tsukamurella
           paurometabola DSM 20162]
          Length = 159

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 13  VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           VL++     D  P   S++AE+  +   +L K LQ L +AGI E++ GRRGG+RL R   
Sbjct: 15  VLLHWLDEGDLTPVPASRLAESYDLPPAYLGKQLQALARAGITESLPGRRGGIRLARSTA 74

Query: 72  QITILDVVKATEESFFVAECFASHKI-------DCP---LVGSCGLTSVLRKALNAFFDV 121
           +IT++DVV A E     ++ FA  +I       D P       CG+   +R A  ++   
Sbjct: 75  EITLMDVVSAIEGP---SDAFACTEIRQRGMNSDNPRSDFTAPCGIAHAMRGAELSWRRE 131

Query: 122 LTQYSIECLV 131
           L   SI  L 
Sbjct: 132 LAATSIADLA 141


>gi|294795234|ref|ZP_06760368.1| Rrf2 family protein [Veillonella sp. 3_1_44]
 gi|294454026|gb|EFG22401.1| Rrf2 family protein [Veillonella sp. 3_1_44]
          Length = 143

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+          + AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEHELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG  L R   +I++LDV++A E   ++  C          VGSC
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99


>gi|313634571|gb|EFS01056.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067]
          Length = 138

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA  I+ LDV++A E       C   +  +      C +  V+  A+    
Sbjct: 61  VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDPKNHAETK--SHCLIGEVMGNAVQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ +I  +V
Sbjct: 119 DYLSKQTIGSIV 130


>gi|88608399|ref|YP_506194.1| rrf2/aminotransferase, class V family protein [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600568|gb|ABD46036.1| rrf2/aminotransferase, class V family protein [Neorickettsia
           sennetsu str. Miyayama]
          Length = 530

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT +T Y I   +  A+H+      + S+IA    ISE FL  IL PL K GI+E++ G 
Sbjct: 10  LTAKTRYAIAASIDIALHSKGRKYVKTSEIASRQKISEKFLELILPPLKKQGILESLLGP 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG RL +  D I ++ ++KA  ++  +  C    +  C        +  L  VL K  N
Sbjct: 70  GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 129

Query: 117 AFFDVLTQYSI 127
            FF+ +T   I
Sbjct: 130 NFFESVTLQDI 140


>gi|313894575|ref|ZP_07828138.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313440765|gb|EFR59194.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 162

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           M L + TDY  R++++ A+    P+      + +AE   I E FL KI++ L+ AGI+++
Sbjct: 1   MKLNQATDYAFRMVLHMAM---LPSGTKITGAVLAEQELIPERFLLKIMRSLIAAGIMKS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            RG  GG  L R   +I++LDV++A E   ++  C          VGSC
Sbjct: 58  FRGVDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYD-------VGSC 99


>gi|253580123|ref|ZP_04857390.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848642|gb|EES76605.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 144

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+HN     +I  I+    ISE +L +I+  L KAG V+++RG
Sbjct: 1   MQISTKGRYALRLMLDLAVHNTGELVKIKDISARENISEKYLEQIISSLKKAGYVKSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG  L R  +  T+  +++ TE S     C       C   G C    L  +L +A+ 
Sbjct: 61  AQGGYMLAREPETYTVGTILRLTEGSMKPVACLEDEPNQCSRAGECVTLRLWKMLDEAIE 120

Query: 117 AFFDVLT 123
              D +T
Sbjct: 121 GVLDKVT 127


>gi|110800338|ref|YP_696471.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
 gi|169343592|ref|ZP_02864591.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
 gi|182625647|ref|ZP_02953416.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
 gi|110674985|gb|ABG83972.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
 gi|169298152|gb|EDS80242.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
 gi|177909049|gb|EDT71524.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
          Length = 153

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH    P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    +++C     + C  V  C    + +K   +  
Sbjct: 61  AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +V    +++ +V +  ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138


>gi|78043860|ref|YP_361240.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995975|gb|ABB14874.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 143

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M+LT+ TDY  R ++Y A   N       +IA    I   FL KIL+ L +AGIV++ RG
Sbjct: 5  MNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKILRQLGQAGIVKSYRG 64

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG  L +  ++IT+LDVV+A E    +  C 
Sbjct: 65 VGGGFSLAKDPEEITLLDVVEAVEGPVKINRCL 97


>gi|227549985|ref|ZP_03980034.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227077937|gb|EEI15900.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 162

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + T++    L+  +   D  P     +AE   I + +L K LQ LV+AGI+ +  G
Sbjct: 1   MKLPRGTEWMAHCLVALSACEDIGPLAKHTLAEMFDIPDAYLSKQLQQLVRAGIIRSSAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAE------CFASHKIDCPLVGSCGLTSVL 111
            RGG  L RPA  +T+LDV+K  +     FV E       F +        G CG+   +
Sbjct: 61  NRGGYFLARPASTVTLLDVIKTVQGDAPLFVCEEVRCRGIFTNDADAIRETGPCGIHHAM 120

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            +A N + D L   ++E L + 
Sbjct: 121 VEAENRWRDSLATVTVEALTQQ 142


>gi|302550950|ref|ZP_07303292.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302468568|gb|EFL31661.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 152

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  +       +AE   +    L K++  L   G++   RGR
Sbjct: 9   MRLLRSTDLALRVLMRLAVAGESSPTTRDVAEGMDVPYTHLAKVVAELQHMGLLTARRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+A E    V +C       CPL  +C L   LR+A  AFF 
Sbjct: 69  GGGLSLTERGRSASVGAVVRAFEGDGDVVDC--EGPTPCPLNSACRLRVALRRAQEAFFA 126

Query: 121 VLTQYSIECLV 131
            L   ++  +V
Sbjct: 127 SLDPITVADIV 137


>gi|303228847|ref|ZP_07315660.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230326|ref|ZP_07317089.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515012|gb|EFL56991.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516467|gb|EFL58396.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 150

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 12/138 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+          + AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMILHMAMLPSGQKVTGGVLAEQEMIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I++LDV++A E   ++  C          VGSC    + + A+N   
Sbjct: 61  VDGGFALNREPKDISMLDVIRAVEGDTYLQRCLYD-------VGSCSKACMGQCAVNEAM 113

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+       LVR   S+
Sbjct: 114 SVVQAE----LVRQMESV 127


>gi|289767152|ref|ZP_06526530.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289697351|gb|EFD64780.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 148

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD  +R +M  A+    D P    ++AE   +      K +  L   G+VE  R
Sbjct: 1   MRLTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L     + ++  +V+  E    V +C   +   CPL G+C L   LR A  AF
Sbjct: 61  GRGGGLTLTDLGRRASVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  LV
Sbjct: 119 YAALDPLTVTDLV 131


>gi|331269734|ref|YP_004396226.1| BadM/Rrf2 family transcriptional regulator [Clostridium botulinum
           BKT015925]
 gi|329126284|gb|AEB76229.1| transcriptional regulator, BadM/Rrf2 family [Clostridium botulinum
           BKT015925]
          Length = 144

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI + + P  I  IA    ISEL+L ++  PL KA ++++VRG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYGESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ D++   E    ++ C  S   +C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLNKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPTRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +  +   +K
Sbjct: 119 EVTQSITLQDMANDYKRLK 137


>gi|266623212|ref|ZP_06116147.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
 gi|288865011|gb|EFC97309.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
          Length = 144

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  A+H     +I+Q+AE   IS+ +L +I+  L +AG V+++RG 
Sbjct: 1   MKISTKGRYALRMMLEFALHPGECTKINQVAERQQISDKYLEQIVTILSRAGYVKSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNA 117
           +GG  L +     T+  +++ TE S     C       C   G C   +V   L +A+N 
Sbjct: 61  QGGYYLTKEPSDYTVGMILRLTEGSLAPVACMEDELNQCIRSGHCATLTVWKQLDQAING 120

Query: 118 FFDVLT 123
             D +T
Sbjct: 121 VVDNIT 126


>gi|73749368|ref|YP_308607.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
 gi|147669978|ref|YP_001214796.1| BadM/Rrf2 family transcriptional regulator [Dehalococcoides sp.
           BAV1]
 gi|289433326|ref|YP_003463199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Dehalococcoides sp. GT]
 gi|73661084|emb|CAI83691.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
 gi|146270926|gb|ABQ17918.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
           BAV1]
 gi|288947046|gb|ADC74743.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
           GT]
          Length = 148

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  + +  +   A+H  + P  I  +A+   ISE +L ++  PL  AG+V +VRG
Sbjct: 1   MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + D+VKATE S   +EC    ++ C     C   +V  +   A  
Sbjct: 61  ANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLRIKKATD 119

Query: 120 DVLTQYSIECLVRN 133
           ++L   +++ LV+ 
Sbjct: 120 EILDSINLDNLVQQ 133


>gi|225573521|ref|ZP_03782276.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039118|gb|EEG49364.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
           10507]
          Length = 142

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A+H++  P  I  IA    IS  +L +++  + +AG+V +VRG
Sbjct: 1   MKLSTKGRYGLRAMVDLAVHSETGPVSIQSIANRQDISVSYLEQLVGKMRRAGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG RL +   +I++ DV++A E +    +C  + ++  C     C    V +K   + 
Sbjct: 61  ATGGYRLAKSPSEISVGDVLRALEGTLDAVDCPGNLEVSTCKASQKCVTKYVWKKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
              +    IE LV+    +
Sbjct: 121 SQAVDTIMIEQLVQESKKV 139


>gi|301045949|ref|ZP_07193133.1| Rrf2 family protein [Escherichia coli MS 185-1]
 gi|300302032|gb|EFJ58417.1| Rrf2 family protein [Escherichia coli MS 185-1]
          Length = 112

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL +PA  I I DVV+  E   
Sbjct: 12  ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLV 112


>gi|94312314|ref|YP_585524.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356166|gb|ABF10255.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 155

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY +  +   P  I+++ +   IS   L K+   L K G +   RG
Sbjct: 6   MQLTRFSDYALRLLMYVSRGDGSRPITIAEVGQQFDISHNHLVKVAARLSKLGWISATRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++++  +++  E    + +C       C L G+C L   L  A  AF+
Sbjct: 66  RHGGLQLGPGAEKLSVGAILRELEGRKAIIDCA---DPPCALNGNCRLKRALDDAEEAFY 122

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +  +R++
Sbjct: 123 RALDGVTLADVSGSRTA 139


>gi|282896876|ref|ZP_06304882.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
 gi|281198285|gb|EFA73175.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
          Length = 145

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  N  P +I QIA    I + +L ++L  L + GI+++ R
Sbjct: 1   MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG-LTSVLRKALN 116
           G +GG  L R   +IT+LD+++  E     +AE   +     P     G +  + ++A  
Sbjct: 61  GSKGGYLLAREPRKITVLDILECLEGLDIKIAEDNTN-----PKTADSGIIDEIWQEARQ 115

Query: 117 AFFDVLTQYSIECLVRNRS 135
           A   VL +YS+E L   R+
Sbjct: 116 AANLVLEKYSLEDLCEKRT 134


>gi|119357736|ref|YP_912380.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355085|gb|ABL65956.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 141

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           +H++++ +YG+  + Y A       R+    ++A+    S+ FL K +Q L KAGI+ +V
Sbjct: 2   LHVSRKFEYGLHAVSYLATRG--AGRVVTVKEMADDIGFSQEFLSKAMQSLKKAGIIASV 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +G +GG  L +P   IT+ D+ +A E    +  C  +  + C +   C     +    N 
Sbjct: 60  QGVKGGYTLAKPLSGITVADIGEAIEGKPHLTRC--ASDLYCEIASKCTHKQYMNLLQNK 117

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
             + +   ++E L+    S+ ++
Sbjct: 118 IQEFMGATTLETLIEGDDSLPQL 140


>gi|220929352|ref|YP_002506261.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium cellulolyticum H10]
 gi|219999680|gb|ACL76281.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulolyticum H10]
          Length = 148

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H       +  IAE   +SE +L ++   L K+G+V+++RG
Sbjct: 1   MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQLFSSLKKSGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSV---LRKAL 115
            +GG  L R AD++T+ D++++ E +    +C       +C     C    V   +R  +
Sbjct: 61  AQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCDRADECVTVDVWAKIRDKV 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
           N   D +T   +   + N+S+   I+
Sbjct: 121 NEVVDSITLADLVSELENKSNNDYIY 146


>gi|78355282|ref|YP_386731.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217687|gb|ABB37036.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 220

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ RT Y  R+L+  A H  D P   S ++E   +S  F+ +I++PL KA ++ +VRG
Sbjct: 52  MKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPLKKAKLINSVRG 111

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVLR 112
             GG  L R   +IT+  +V   E    + +C   +++ C    +C        ++ VL 
Sbjct: 112 AAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNEL-CTRTPTCKTRVAWLRISEVLE 170

Query: 113 KALNAF 118
           + LN+ 
Sbjct: 171 RELNSI 176


>gi|295094646|emb|CBK83737.1| rrf2 family protein (putative transcriptional regulator)
           [Coprococcus sp. ART55/1]
          Length = 144

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 69/135 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  +I++     +  +A  C +S+ +L ++   L+KAG + +VRG 
Sbjct: 1   MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL  PA++IT+  V++A E      +       D  +V +  +  V     +A  +
Sbjct: 61  RGGYRLNMPAEEITVGMVLRAIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLESAINN 120

Query: 121 VLTQYSIECLVRNRS 135
           VL   +I  L R  S
Sbjct: 121 VLDNKTIADLTREYS 135


>gi|83310381|ref|YP_420645.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945222|dbj|BAE50086.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 128

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TD+ IR+L+Y + H D    + ++AE   IS   L KI++ L + G ++TVRG+
Sbjct: 1   MKITQFTDFSIRLLIYLSRHPDRVVTVREVAEYYDISAEHLKKIVRSLAELGHIQTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I +  + +  +E+  +  C       CP +  C L  ++  AL AF  
Sbjct: 61  HGGLRLGREPQAIDLGHLFR-QQENLALLPCHEPCD-SCP-IADCRLRGLVDSALAAFLA 117

Query: 121 VL 122
           V 
Sbjct: 118 VF 119


>gi|197303190|ref|ZP_03168232.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
          29176]
 gi|197297730|gb|EDY32288.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
          29176]
          Length = 151

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG+R L+  A +++  P  I+ I++   ISE +L +++  L KAGIV+++RG
Sbjct: 1  MKLSTKGRYGLRALIDLAQYSEETPVSITSISKRQDISERYLEQLMSMLKKAGIVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A +I++ +V++A E S    EC
Sbjct: 61 ANGGYILARDAKEISVGEVLRALEGSLEPVEC 92


>gi|184157980|ref|YP_001846319.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213157174|ref|YP_002319219.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
 gi|215483548|ref|YP_002325767.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239501899|ref|ZP_04661209.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB900]
 gi|260555142|ref|ZP_05827363.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter baumannii ATCC 19606]
 gi|301345048|ref|ZP_07225789.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB056]
 gi|301510365|ref|ZP_07235602.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB058]
 gi|301595498|ref|ZP_07240506.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB059]
 gi|332851744|ref|ZP_08433669.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013150]
 gi|332865881|ref|ZP_08436661.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013113]
 gi|332874439|ref|ZP_08442342.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6014059]
 gi|183209574|gb|ACC56972.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193077275|gb|ABO12061.2| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
 gi|213056334|gb|ACJ41236.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
 gi|213987411|gb|ACJ57710.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260411684|gb|EEX04981.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter baumannii ATCC 19606]
 gi|322508298|gb|ADX03752.1| iscR [Acinetobacter baumannii 1656-2]
 gi|323517924|gb|ADX92305.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332729751|gb|EGJ61086.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013150]
 gi|332734931|gb|EGJ66017.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013113]
 gi|332737283|gb|EGJ68207.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6014059]
          Length = 157

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + ++  L+ +R +++ +
Sbjct: 119 DYLAKITLANLI-SRDNVQTV 138


>gi|296272138|ref|YP_003654769.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096313|gb|ADG92263.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter
           nitrofigilis DSM 7299]
          Length = 133

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+++Y +  L+  A  +D    + +++    I + FL KI+Q L K  IV + RG 
Sbjct: 1   MLLTKKSEYALLSLISIA-KSDKAKNVDELSRELRIPKSFLAKIMQNLAKNEIVISQRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
            GG  L +P DQ+TI  +  A EE    V EC  S    CP     L     L + L+  
Sbjct: 60  NGGFILAKPYDQLTIFSITAAAEEKIPSVFECAPSMD-SCPSESGSLCSIWPLLNNLQGK 118

Query: 115 LNAFFDVLT 123
           +N F + LT
Sbjct: 119 INEFLEELT 127


>gi|254796684|ref|YP_003081520.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
           risticii str. Illinois]
 gi|254589924|gb|ACT69286.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
           risticii str. Illinois]
          Length = 522

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT +T Y I   +  A+H+      + S+IA    ISE FL  IL PL K GI+E++ G 
Sbjct: 2   LTAKTRYAIVASIDIALHSKGRKYVKTSEIASRQKISEKFLEVILPPLKKQGILESLLGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG RL +  D I ++ ++KA  ++  +  C    +  C        +  L  VL K  N
Sbjct: 62  GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 121

Query: 117 AFFDVLTQYSI 127
            FF+ +T   I
Sbjct: 122 NFFESVTLQDI 132


>gi|283852450|ref|ZP_06369719.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572188|gb|EFC20179.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 150

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A      P     IA++  I + FL  IL  L + G V++ RG
Sbjct: 1   MAVTQKCQYALRALFELARRKGQGPVPAGGIADSQAIPKRFLEVILHQLRQGGFVDSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RPA  +T+ +V++  +      +C       DCPL G C    +   A  A 
Sbjct: 61  KEGGFYLARPAASVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGRCVFRGLWDDARAAL 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V    ++E LV     ++
Sbjct: 121 VQVYDTRTLEDLVEEERRLE 140


>gi|194333370|ref|YP_002015230.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
          aestuarii DSM 271]
 gi|194311188|gb|ACF45583.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
          aestuarii DSM 271]
          Length = 160

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LTK TDY IR L+  A H +      +IAE   I   FL  +LQ LV+AG + +  G  G
Sbjct: 4  LTKHTDYAIRALLTLAGHGEGYLSARRIAEEQQIPYQFLRGLLQELVRAGFISSREGAHG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92
          GV+L +  + I++ +V+   + S  ++EC 
Sbjct: 64 GVKLIKDPETISVREVIALFQGSIELSECM 93


>gi|302532532|ref|ZP_07284874.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces sp. C]
 gi|302441427|gb|EFL13243.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces sp. C]
          Length = 152

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  L   A  +D P +   IA+A  I   FL  IL  + + G+V + RG
Sbjct: 1  MRISARADYAVRAALQLAASQDDGPLKAEAIADAQEIPHKFLEGILNDMRRGGLVLSQRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL RPA  I+I DV++  +
Sbjct: 61 GNGGYRLARPARSISIADVIRVVD 84


>gi|160937566|ref|ZP_02084927.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439635|gb|EDP17385.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
          BAA-613]
          Length = 135

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ +DY IR++   A+ +     + QI +   + + F +KIL+ L ++G+V   RG 
Sbjct: 1  MMITRESDYAIRIIR--ALKDGELLPLEQICQRELVPKQFAYKILKKLERSGLVSIRRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           GG  L R    +T+LD++KA +E FF+  C  S 
Sbjct: 59 GGGCILNRSLADLTLLDIIKAADEEFFLNPCLDSQ 93


>gi|56751534|ref|YP_172235.1| hypothetical protein syc1525_d [Synechococcus elongatus PCC 6301]
 gi|81301394|ref|YP_401602.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686493|dbj|BAD79715.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170275|gb|ABB58615.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
           elongatus PCC 7942]
          Length = 171

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  C    D P  +  IA+   IS   L K+L  L KAG+V   +G
Sbjct: 26  MKLTVRAHYSLKALIDLCLQPEDEPVSMRAIAQRQNISPTLLEKLLVELCKAGLVTATKG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEE 84
           RRGG +L RPA +I++ D++ A  E
Sbjct: 86  RRGGYQLARPAAKISLADILAAVGE 110


>gi|329934459|ref|ZP_08284538.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
           family [Streptomyces griseoaurantiacus M045]
 gi|329306055|gb|EGG49910.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
           family [Streptomyces griseoaurantiacus M045]
          Length = 152

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYATRALLELAREPSRPLTCEAIASSQHIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA+ IT+LDV  A +             +D P   S GL +V R+       
Sbjct: 61  EGGYWLGRPAEAITLLDVAHAVDGELITLRGEPLTGLDYPGPAS-GLPAVWRRIEEEAAA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           +L   ++  L+   +S      +G
Sbjct: 120 LLRSTTLTSLLPGEASAPLPAGSG 143


>gi|302388919|ref|YP_003824740.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
 gi|302199547|gb|ADL07117.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
          Length = 135

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57
           M L + TDY  R +++  +    P  + +   IAE   I   F+ KIL+ L +AGIV++ 
Sbjct: 1   MKLNQATDYAFRAVLH--LSKLPPGEVVEARVIAEQEHIPMRFMLKILRLLTQAGIVKSY 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALN 116
           RG  GG  L +    IT+ DVV+A E   ++  C  A  + +      C +   L     
Sbjct: 59  RGVGGGYALAKMPRDITMRDVVEAVEGPVYINRCLIAPEECNKRSTAKCSIHKALFSIQQ 118

Query: 117 AFFDVLTQYSIECLVRN 133
              D L +Y+ E L +N
Sbjct: 119 TINDKLEEYNFEILSKN 135


>gi|164686973|ref|ZP_02211001.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
           16795]
 gi|164603858|gb|EDQ97323.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
           16795]
          Length = 147

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++ +  Y +R+++  AI++D    RI  IA+   IS+ +L +I+  L +AG +++VRG
Sbjct: 4   LKISTKGRYALRLMIDLAINDDGKCIRIRDIAKRQEISDKYLEQIISILNRAGYIKSVRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +   + T+  +++ TE S     C       C     C    + +K   A  
Sbjct: 64  PQGGHRLAKHPSEYTVGMILRLTEGSLSPVACLDDEVNQCTRQAQCATLELWKKLDKAIS 123

Query: 120 DVLTQYSIECLVR 132
           DV+   ++E LV+
Sbjct: 124 DVVDNVTLEDLVQ 136


>gi|167465258|ref|ZP_02330347.1| possible transcriptional regulator [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 139

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L RPA+QIT   +++  E
Sbjct: 61 AYGGYILSRPAEQITTGQIIRVLE 84


>gi|290968345|ref|ZP_06559886.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781620|gb|EFD94207.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 153

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
          M L + TDY  R+++Y A    +P       + +A+   I E FL KI++ L  AGI+++
Sbjct: 1  MKLNQATDYAFRMVLYLA---SFPEGTKVTGAALADKQNIPERFLLKIMRSLTAAGIMKS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           RG  GG  L R A +IT+ D+++A E    +  C 
Sbjct: 58 YRGVEGGFSLNRSAKEITLFDIIEAVEGQTELQRCL 93


>gi|32476776|ref|NP_869770.1| hypothetical protein RB11077 [Rhodopirellula baltica SH 1]
 gi|32447322|emb|CAD77148.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A      N ++ +A    IS   + K++  L + G V ++RG 
Sbjct: 15  MRLTTQTDYALRTLMYLATRESRAN-VAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 73

Query: 61  RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L  RP D +T+  ++   E    +  C A     C +   C LT VL  A     
Sbjct: 74  GGGIELAVRPED-VTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQM 131

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   ++  ++  R  + +
Sbjct: 132 DYLNSVTLAEVIPTRKQLDR 151


>gi|104781179|ref|YP_607677.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110166|emb|CAK14873.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 178

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++      +     +  +AE   + + +L K+   L +AG+V    G RGG R
Sbjct: 9   EYGIHCLLFLVDERGDSREASVRDLAELQGVPQEYLAKVFTKLARAGLVVATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RP+D+IT+LD+V A + +  + +C         F          G+C + +V+  A  
Sbjct: 69  LARPSDEITVLDIVTAIDGAKKIFDCREIRERCAVFEGSAPGWATEGTCAIHAVMLGAQK 128

Query: 117 AFFDVLTQYSIECLVRN 133
              + L Q +I  L R 
Sbjct: 129 RMEEALAQQTILDLARR 145


>gi|327539861|gb|EGF26464.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 141

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A      N ++ +A    IS   + K++  L + G V ++RG 
Sbjct: 1   MRLTTQTDYALRTLMYLATRESRAN-VAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 59

Query: 61  RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L  RP D +T+  ++   E    +  C A     C +   C LT VL  A     
Sbjct: 60  GGGIELAVRPED-VTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQM 117

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   ++  ++  R  + +
Sbjct: 118 DYLNSVTLAEVIPTRKQLDR 137


>gi|301155741|emb|CBW15209.1| DNA-binding transcriptional repressor [Haemophilus parainfluenzae
           T3T1]
          Length = 151

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHAGTDPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL  P DQI+I  V+ A  E+  V  C    K +C     C   S+ +   +   
Sbjct: 61  PGGGYRLALPTDQISIGMVISAVNENINVTRCLG--KGNCQGGVECLTHSLWQDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV  +S   K
Sbjct: 119 DFLDEITLAELVEKKSGKHK 138


>gi|206901224|ref|YP_002251262.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
 gi|206740327|gb|ACI19385.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
          Length = 144

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++ + +YG+R ++Y     +YP+    +SQI++   IS  FL +++  L +A ++E+ +G
Sbjct: 4   VSAKLEYGLRAMIYLG--ENYPHEKVTLSQISQKENISREFLAQLMSDLRRANLIESYKG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P  +IT+ ++ +A E    + +C       C    +C   SV R       
Sbjct: 62  ITGGYTLTKPPKEITLKEIFEALEGPIQIIDCIHLEN-KCERENTCYSKSVWRFIEKKII 120

Query: 120 DVLTQYSIECLV 131
           D+L + ++E L+
Sbjct: 121 DLLGKLTLEDLI 132


>gi|189499477|ref|YP_001958947.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189494918|gb|ACE03466.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 167

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LTK TDY IR L+    H        QI++   I   FL +ILQ L K G+  +  G  G
Sbjct: 6   LTKNTDYAIRALLVLGTHEGEYVSARQISQQQGIPYQFLRRILQELNKNGLTTSREGAHG 65

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           GVRL +  D I + DV++  +    ++EC    +I C    SC L
Sbjct: 66  GVRLEKNPDAIRVRDVIEIFQGKVELSECMFRKQI-CANRASCVL 109


>gi|260550152|ref|ZP_05824366.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406907|gb|EEX00386.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 157

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + ++  L+ +R +++ +
Sbjct: 119 DYLAKITLADLI-SRDNVQTV 138


>gi|255318956|ref|ZP_05360181.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262378308|ref|ZP_06071465.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter radioresistens SH164]
 gi|255303973|gb|EET83165.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262299593|gb|EEY87505.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter radioresistens SH164]
          Length = 157

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARTADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  LV
Sbjct: 119 DYLAKITLADLV 130


>gi|294101175|ref|YP_003553033.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
 gi|293616155|gb|ADE56309.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
          Length = 138

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T YG+R L+      D   P  I+ IA    ISE +L ++   L + G++E+VR
Sbjct: 1   MKLSTKTRYGLRALLELVRQYDGRTPLSITDIASKENISERYLEQLFLKLRRDGLIESVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +IT+ +VV+  E +  +A+C      +C    +C    +  +  ++ 
Sbjct: 61  GPQGGYLLSRAPMEITVAEVVEVLEGNIQIADCLEGP--ECMRESACPARKLWLRLRDSI 118

Query: 119 FDVLTQYSIECLVRN 133
            +VL   +++ L+ +
Sbjct: 119 DNVLVSTTLKDLIED 133


>gi|282882582|ref|ZP_06291201.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
          lacrimalis 315-B]
 gi|281297557|gb|EFA90034.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
          lacrimalis 315-B]
          Length = 135

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY  R+  + A H +       IAE C ++E F  +IL+ L  AGI    RG 
Sbjct: 1  MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          +GG  L RP ++IT+  ++ A +    +  C  
Sbjct: 61 KGGYGLKRPKEEITLYQIICAIDGPTVINRCLG 93


>gi|303228671|ref|ZP_07315496.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231408|ref|ZP_07318141.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513916|gb|EFL55925.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516651|gb|EFL58568.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 139

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H    N  I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGTEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
           + GG RL +   +  + +++ A E+S  +  C       CP+   C LT+ L + L + F
Sbjct: 61  KYGGYRLVKDPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+ + S++ ++ ++  ++
Sbjct: 120 RHVMERVSLQDVMDHKFPVE 139


>gi|225572497|ref|ZP_03781361.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040037|gb|EEG50283.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
           10507]
          Length = 144

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +    ++ I E   I+  F +KIL+ L KA IV   RG 
Sbjct: 1   MLITRECDYAVRVIR--ALSGEERLSVNDICEREEITAPFAYKILKKLQKAKIVRGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG  L +   +IT+LDV  A +   ++ EC    K    D  L G C +   L +    
Sbjct: 59  HGGYSLKKSVSEITLLDVYLAIDPGMYIIECMNPKKKCCRDEKLDGGCEVHQELLRIQER 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
             D+L++ S++ ++      +K+  
Sbjct: 119 LQDMLSERSLQEILGESEKKEKVVG 143


>gi|160878171|ref|YP_001557139.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426837|gb|ABX40400.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           phytofermentans ISDg]
          Length = 145

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI+N      I  IA    IS+ +L +I+  L +AG V++ RG
Sbjct: 1   MKISTKGRYALRLMLDLAINNTGEFITIKSIAGRQEISDKYLEQIITLLSRAGYVKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +   + T+  ++K  E S     C      DC   GSC    V +K   A  
Sbjct: 61  AQGGYRLTKEPKEYTVGMILKLIEGSLAPVSCVEEEDNDCNRYGSCATLFVYQKINEAVN 120

Query: 120 DVLTQYSIECLV 131
           +V+   ++E LV
Sbjct: 121 NVVDNITLEDLV 132


>gi|282864294|ref|ZP_06273350.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
 gi|282560781|gb|EFB66327.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
          Length = 143

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 1   MHISAKADYATRALLELACEPGRPLTCEAIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            GG  L RPA+ IT+LDVV+A +             +D P
Sbjct: 61  EGGYWLGRPAEDITLLDVVRAVDGEVLTLRGEPLADLDYP 100


>gi|170761689|ref|YP_001786255.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408678|gb|ACA57089.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 126

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 11/107 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND------YPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M  TK T+Y + ++ Y   H+D      YP     +A    IS  +L KIL  LVKA I+
Sbjct: 1   MKYTKATNYALHIVAYIIKHDDGKHISLYP-----LANYFNISPSYLSKILTKLVKADII 55

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           ++  G  GG  L +  + I++LDV+KA E +  +  C  + K +C +
Sbjct: 56  QSTPGVNGGYILYKNKEDISLLDVIKAIEGNSSIFTCEMNEKSECKI 102


>gi|325830725|ref|ZP_08164109.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
 gi|325487132|gb|EGC89575.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
          Length = 186

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       D    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGDSYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
           RGG+ L C PA  +T+L+V++A +    ++ C       C     C    + + A   LN
Sbjct: 61  RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118

Query: 117 AFFDVLT 123
           A+F  +T
Sbjct: 119 AYFGAIT 125


>gi|289524284|ref|ZP_06441138.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502456|gb|EFD23620.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 150

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 23  YPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           +  RIS  +++E   +SE    K+ Q L KAG+V ++RG  GGV L  PA +IT+ +V +
Sbjct: 25  HERRISVRKLSEMISVSEQHAAKVFQRLTKAGLVNSLRGPSGGVELAVPASKITLYEVYE 84

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           A E       C   +K  CP  GSC    +L++    F   L+  ++  LVR+
Sbjct: 85  AIEGKPSSDYCLI-NKQHCPF-GSCIFGGMLKRINEEFIKYLSSRTLADLVRS 135


>gi|291166173|gb|EFE28219.1| Rrf2 family protein [Filifactor alocis ATCC 35896]
          Length = 147

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A++ D   P  +  IA    +SE +L +I   L K+G+V +VR
Sbjct: 1   MKLSTKGRYGLKAMYDLAVYEDLHEPISLKAIASNNNLSEQYLEQIFSKLKKSGLVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R + +IT+ D+++  +     + C       C     C   +V +K  ++ 
Sbjct: 61  GAQGGYVLSRSSKEITVGDIIRVLDGPIAPSMCLLEEVGPCISGKDCPTRAVWKKIKDSV 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            DV+   ++  +V     IK
Sbjct: 121 DDVIDNITLYDMVIEHKLIK 140


>gi|251773253|gb|EES53803.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 174

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 2   HLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +L K  +Y +  L+       D P  +S IAE   +S  +L KI   L KAGIV    G 
Sbjct: 6   YLGKGVEYALHSLLSLIKTPEDSPLGVSDIAEFQGVSPSYLSKIFTRLKKAGIVRFSIGV 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDC--PLVGSCGLTSVLR 112
           +GG  L +P DQIT  DVV A E  F + EC       A +K  C  P   S G  ++ +
Sbjct: 66  KGGYVLAKPPDQITFWDVVVAVEGEFSLFECRNIREKIAIYKEGCLNPDWQSRGPCTIHK 125

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
               A  DV TQ       +N + ++K+ +
Sbjct: 126 ----AMMDVETQIRNSLKEKNIAWLRKVVD 151


>gi|168182647|ref|ZP_02617311.1| rrF2 family protein [Clostridium botulinum Bf]
 gi|237796007|ref|YP_002863559.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674079|gb|EDT86040.1| rrF2 family protein [Clostridium botulinum Bf]
 gi|229263788|gb|ACQ54821.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 148

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 6/147 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI +   P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116
            +GG  L R    IT+ D+++  E    ++ C       C  V  C    L + ++K+L+
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNVDCCATRLLWAKIKKSLD 119

Query: 117 AFFDVLT-QYSIECLVRNRSSIKKIFN 142
              +  T Q  +E   +  S I++  N
Sbjct: 120 NIMESTTLQDMVEDYKKINSPIRRSEN 146


>gi|283780532|ref|YP_003371287.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283438985|gb|ADB17427.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 178

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++  +Y +R ++Y A  +  P    Q+A    + + +L K+LQ LV+AGI+ + RG  GG
Sbjct: 3   SQTVEYALRAVVYLAADSSQPATTEQLAAVTKVPKAYLSKVLQGLVRAGILHSQRGIGGG 62

Query: 64  VRLCR-PADQITILDVVKATEESFFVAEC---FASHKID-CPL 101
           + L + PAD +TIL+VV+A E    +  C    A H    CPL
Sbjct: 63  MTLVKSPAD-LTILEVVQAVEPVARIRSCPLGLAWHGEHLCPL 104


>gi|114776741|ref|ZP_01451784.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
 gi|114552827|gb|EAU55258.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
          Length = 151

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          + LTK TDYGI +L   A         +++AE   I    + KILQ L+   ++ + RG 
Sbjct: 2  LRLTKLTDYGILLLTRMASSEQLRFTATELAEMTHIPMPTVSKILQMLLHENLLSSTRGA 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
          RGG +L R A QI I DV+   E S  + EC
Sbjct: 62 RGGYQLTRDASQINIRDVINVFEGSIALTEC 92


>gi|307325862|ref|ZP_07605062.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888650|gb|EFN19636.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 149

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TD  +R +M  A+    P    Q+A    +    L K+   L   G++ET RGR
Sbjct: 1   MRLTKSTDLALRTIMRLAVTGAEPCTARQVAGELQVPYSHLAKVAARLQHLGLIETRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  +V+  E    V +C       CPL   C L   LR+A  AF  
Sbjct: 61  GGGLALTATGRTASVGQLVREFEGVGDVVDC--EGDTPCPLRQGCRLRMALRRAQEAFLA 118

Query: 121 VLTQYSIECLV 131
            L   +++ LV
Sbjct: 119 SLDPLTVDDLV 129


>gi|262370470|ref|ZP_06063796.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
 gi|262314812|gb|EEY95853.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
          Length = 157

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V ++RG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L V++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARRADEITVLAVIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + ++  LV  R +++K+
Sbjct: 119 DYLAKITLADLV-ARDNVQKV 138


>gi|153938123|ref|YP_001392722.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934019|gb|ABS39517.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320703|gb|ADG01081.1| putative transcriptional regulator [Clostridium botulinum F str.
           230613]
          Length = 133

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A+  D PN+I    ++AE   +S  +L KIL  LVK G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLAM--DTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G  GG  L +  + I+ LD++ A E    + +C     +D P    C +  V+  A   
Sbjct: 59  SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112

Query: 118 FFDVLTQYSIECLVR 132
             + L+   I  LV+
Sbjct: 113 MEEELSNQKISDLVK 127


>gi|322806906|emb|CBZ04476.1| iron-sulfur cluster regulator IscR [Clostridium botulinum H04402
           065]
          Length = 148

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI +   P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    ++ C       C  +  C    +  K   +  
Sbjct: 61  AQGGYILNRHPEDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           +++   +++ +V +   I
Sbjct: 120 NIMESTTLQDMVEDYKKI 137


>gi|315181355|gb|ADT88268.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC
           11218]
          Length = 172

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 17/134 (12%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  L+     +  P  +S + EA  +  +   +L KI     KAG+VE+  GR+GG 
Sbjct: 9   EYGIHCLVNMVDEDGEPREMS-VREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRKGGY 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FAS--HKIDCPLVGSCGLTSVLRK 113
           +L +   +I++LD+  A +    + +C         F    H+  C   G CG+ +V+RK
Sbjct: 68  KLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVHQWACE--GMCGIHAVMRK 125

Query: 114 ALNAFFDVLTQYSI 127
           A N    VL + SI
Sbjct: 126 AQNQMQQVLAEQSI 139


>gi|295102090|emb|CBK99635.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii L2-6]
          Length = 143

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H ++    + ++A    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHRSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           + GG RL R  DQ T+ +++  TE S     C       CP +  C
Sbjct: 61  KGGGYRLTREPDQYTVGEILTLTEGSLAPVSCLVQGAAPCPRMSGC 106


>gi|294811041|ref|ZP_06769684.1| Rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
 gi|294323640|gb|EFG05283.1| Rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 15  MYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           M  A+H+D P   + ++A A  +      K++  L   G+VE  RGR GG+ L       
Sbjct: 1   MRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRGRGGGLALTTAGRTG 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           +I  +V+  E +  V  C       CPL  +C L SVLR A  AF+  L  Y+++ LV
Sbjct: 61  SIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFYTALDPYTVDDLV 116


>gi|332183985|gb|AEE26239.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida 3523]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++I+E+  ++   + K+L  L  A IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAQNDSNPYSAAKISESTGLNIPTVRKLLNQLSLANIVTSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FF 119
            GG  L     +IT+LD+VK  E+   + EC    K  C L G+C + S   K LN+   
Sbjct: 62  EGGYTLVSDPREITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNC-MVSGYWKVLNSQLL 118

Query: 120 DVLTQYSIECLVRNR 134
            +L++ SI  +V N+
Sbjct: 119 GLLSKTSIYDIVNNK 133


>gi|78186422|ref|YP_374465.1| hypothetical protein Plut_0538 [Chlorobium luteolum DSM 273]
 gi|78166324|gb|ABB23422.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
           DSM 273]
          Length = 136

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  + Y A    D    + ++AE    S  FL K +Q L +AGI  +V+G
Sbjct: 2   LQVSRKFEYGLHAVAYLASRGVDRVVTVKEMAEEIGFSPEFLAKAMQSLTRAGIASSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R A+ IT+ D+  A E +  +  C      +C +  SC     +    N   
Sbjct: 62  VKGGYQLARKAESITVADIGTAIEGAPHLVRCVVKAD-NCEIYSSCPHRGYMTSLQNRIQ 120

Query: 120 DVLTQYSIECLV 131
            +L   +++ L+
Sbjct: 121 GLLASTTVQALL 132


>gi|257440868|ref|ZP_05616623.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
 gi|257196648|gb|EEU94932.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
          Length = 143

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H  +    + ++AE   ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHQAERYVPLKEVAERQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C       C  + +C  T  + K LN   
Sbjct: 61  KGGGYRLTRTPDQYTVAEILLLTEGSLAPVSCLVPGAPACERLPNC-RTYTMWKGLN--- 116

Query: 120 DVLTQY 125
           D++  Y
Sbjct: 117 DMIADY 122


>gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 151

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY  R L+  A+H +D P  ++++A    + + +L +IL  L  AG+V + RG
Sbjct: 1   MRVSTRGDYAARALLSLALHPSDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R A++IT+  ++ A +    V +    H+   C   G C L  V  +  +  
Sbjct: 61  AGGGYTLGRSAEEITLAQIIAAVDGPITVGDFKEPHEDGACDHEGQCALLEVWAEVGHHM 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D L  Y++  +VR    ++
Sbjct: 121 ADHLRSYTLAEMVRRARGLR 140


>gi|237736975|ref|ZP_04567456.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC
          9817]
 gi|229420837|gb|EEO35884.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC
          9817]
          Length = 143

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          M +    +Y IR+L+Y   + +  NRI   ++I++A  I  LF  +IL+ L KA +V+  
Sbjct: 1  MRIKNEIEYVIRILLYLTKYGE--NRIVSSNEISDAEDIPHLFSLRILKKLEKASLVKIF 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +G RGG +L +P+++IT+ D V+  E    + +C
Sbjct: 59 KGARGGYQLTKPSEEITLRDAVETIEPVICIKDC 92


>gi|255505326|ref|ZP_05345447.3| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
 gi|255268340|gb|EET61545.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
          Length = 153

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+     P R+  IA+   IS  ++ +I+  L KAG ++++RG
Sbjct: 10  MKISTKGRYALRIMLDIAVMGGSEPVRVKDIAKRQEISVKYMEQIVTILSKAGYLKSIRG 69

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R     T+  +++ TE S     C       CP    C    + R+   A  
Sbjct: 70  PQGGYRLARQPKDYTVGMILRLTEGSLAPVACLEDEPNLCPRQEQCVTLRLWRELDEAIR 129

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+ +Y++E L + +  +
Sbjct: 130 GVVDKYTLEDLAQWQQEM 147


>gi|225028919|ref|ZP_03718111.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
 gi|224953758|gb|EEG34967.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
          Length = 149

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M+L+K++ YGI  L+  A++  D   ++S IAE   IS  +L +I   L KAG+V +V+G
Sbjct: 1  MNLSKKSRYGITALIDLAVYAKDQCVQLSSIAERNNISVKYLEQIFSSLRKAGLVRSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L +  + IT+ DV+ A + S+ + +
Sbjct: 61 PQGGYLLAKRPESITVADVIHALDGSYLLED 91


>gi|295111229|emb|CBL27979.1| transcriptional regulator, BadM/Rrf2 family [Synergistetes
           bacterium SGP1]
          Length = 161

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+  T YG+R L   C    D P  +S IA    I   +L ++   L ++ I+++VRG
Sbjct: 1   MKLSTTTRYGLRALTDLCVQQQDAPVSVSDIARRQSIPVNYLEQLFAKLRRSNILKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116
            +GG  L RPA +IT+ +V+ A  E      C +     C    +C    L + LR +++
Sbjct: 61  AQGGYLLARPAKEITLSEVIAALGEEILFGSCQSEK--GCANAATCSTFDLWNRLRISID 118

Query: 117 AFFDVLT 123
              D  T
Sbjct: 119 GILDGTT 125


>gi|325290069|ref|YP_004266250.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965470|gb|ADY56249.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 165

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R  YG+++++  A+H N+ P  +  +A+   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MRFSTRGRYGVQLMVDLALHSNNEPISLKSVADRQKLSEHYLEQLVPDLRKAGMVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L +  + I + D+++A E      EC      + C     C    V  +  ++ 
Sbjct: 61  AQGGYILAKKTEDIIVGDIIRALEGPIAPVECSGQKTENCCEKTNFCLTREVWVRVSDSI 120

Query: 119 FDVLTQYSIECLVR 132
            D++   S+  LV+
Sbjct: 121 NDLVDSISLADLVQ 134


>gi|269798676|ref|YP_003312576.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Veillonella parvula DSM 2008]
 gi|294792648|ref|ZP_06757795.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
 gi|269095305|gb|ACZ25296.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
           DSM 2008]
 gi|294456547|gb|EFG24910.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
          Length = 139

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H    N  I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
           + GG RL +   +  + +++ A E+S  +  C       CP+   C LT+ L + L + F
Sbjct: 61  KYGGYRLVKDPSEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119

Query: 119 FDVLTQYSIECLVRNR 134
             V+   S++ ++ ++
Sbjct: 120 RHVMEHVSLQDVMDHK 135


>gi|150015981|ref|YP_001308235.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902446|gb|ABR33279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 150

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A  +   P  I  I++   +SE +L ++  PL +A ++ ++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLASNYGGAPVSIKTISKRENLSEYYLEQLFSPLRRANMIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+    IT+ D++   E    +A+C     ++C     C   +V  K   +  
Sbjct: 61  AQGGYVLCKAPKDITVGDIMTILEGPVEIADCI--DGVECDSSDCCATKAVWEKIKRSID 118

Query: 120 DVLTQYSIECLVRN 133
           DV+   +++ ++ +
Sbjct: 119 DVMNSITLQDILDD 132


>gi|118579599|ref|YP_900849.1| BadM/Rrf2 family transcriptional regulator [Pelobacter
          propionicus DSM 2379]
 gi|118502309|gb|ABK98791.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
          propionicus DSM 2379]
          Length = 134

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT++ +Y IR ++Y A    D    +S+IA A  + + FL KI Q   K G+V + RG
Sbjct: 2  MELTRKGEYAIRGIVYLASRPGDQVCLLSEIAAAVDVPQTFLAKIFQQFSKIGLVRSYRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R  ++IT+L+VV+A E       C
Sbjct: 62 TGGGFMLGRAPEKITLLEVVEAVEGPVVPNRC 93


>gi|221194912|ref|ZP_03567968.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
 gi|221184815|gb|EEE17206.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
          Length = 179

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L     + D    +    +A  +   F   I   LV++ IV ++RG 
Sbjct: 1   MEVSRKTDYALRILSILVKNPDKVISVRDAVQASDVPYSFARVIQHDLVRSHIVSSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVL---RKAL 115
           +GG+ L     +IT+LDVV+A +    +A C ++      CP   SC    V     K L
Sbjct: 61  QGGMSLAVDPKEITLLDVVEAIQGPILIAGCESAGPDNTPCPRKASCSFNPVWCNAEKIL 120

Query: 116 NAFFDVLT 123
            ++F  +T
Sbjct: 121 RSYFASVT 128


>gi|126433552|ref|YP_001069243.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126233352|gb|ABN96752.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
          Length = 153

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  A       R++   IA     SE  + K +  L   G+V   R
Sbjct: 1   MQLTRFTDLGLRTMMLLAAGEADGQRVTTRTIAAGANASEHHIAKAVARLADLGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V +C       CPLV +C L   L  A  AF
Sbjct: 61  GRVGGLTLTDAGRDASVGWLVRRLEGDREVIQCGGEDP--CPLVAACRLRKALSDAKEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L +Y+I  L 
Sbjct: 119 YRELDRYTIADLA 131


>gi|166032645|ref|ZP_02235474.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
          27755]
 gi|166027002|gb|EDR45759.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
          27755]
          Length = 148

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L+ ++ YG+R L+  +++  + N    +  IAE   IS  +L ++   L KAGIV+++
Sbjct: 1  MKLSMKSRYGLRALIDLSVN--FKNEQVALGGIAERNNISPQYLEQVFASLRKAGIVKSI 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESF 86
          +G +GG  L +PA+QITI +V++A E  +
Sbjct: 59 KGSQGGYFLNKPAEQITISEVIEALEGDY 87


>gi|289433915|ref|YP_003463787.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170159|emb|CBH26699.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 138

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG +L +PA  I+ LDV++A E       C   +H    P    C +  V+  A    
Sbjct: 61  VNGGYKLAKPASNISFLDVIQAIEGKTAFFHCDPKNHAETKP---HCLIGEVMGNAEQQM 117

Query: 119 FDVLTQYSIECLV 131
            D L++ +I  +V
Sbjct: 118 EDYLSKQTIGSIV 130


>gi|307720334|ref|YP_003891474.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
          autotrophica DSM 16294]
 gi|306978427|gb|ADN08462.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
          autotrophica DSM 16294]
          Length = 137

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K   Y IR+L Y A H D      ++++E   I   FL KI+  +VK+G+V ++RG
Sbjct: 1  MQLSKSAQYAIRILAYMADHKDSKLLNATELSETLLIPYKFLTKIMTEVVKSGLVVSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          R GG    +P  +I + +++    +S    +C
Sbjct: 61 RDGGYSFAKPPSEIMVSEILDIFHDSIKDEQC 92


>gi|258515490|ref|YP_003191712.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779195|gb|ACV63089.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 142

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ + + A+H    P  +  +AE   +SE +L +++  L K+G+V++VRG
Sbjct: 1   MRMSTKGHYGLKAMFFLALHYGPDPIPLKNVAERQGLSENYLEQLIATLRKSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R   +I + D+++  E      EC +      C     C   +V  K  ++ 
Sbjct: 61  AQGGYILARDPSEIKVGDIIRVLEGPIAPLECVSEGVPSVCDQFDFCITRTVWEKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            DVL   S+  + ++    +K
Sbjct: 121 ADVLDSISLADMCQDAEKARK 141


>gi|260770286|ref|ZP_05879219.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
           family [Vibrio furnissii CIP 102972]
 gi|260615624|gb|EEX40810.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
           family [Vibrio furnissii CIP 102972]
          Length = 172

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  L+     +  P  +S + EA  +  +   +L KI     KAG+VE+  GR+GG 
Sbjct: 9   EYGIHCLVNMVDEDGEPREMS-VREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRKGGY 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKAL 115
           +L +   +I++LD+  A +    + +C         F          G CG+ +V+RKA 
Sbjct: 68  KLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVPQWACEGMCGIHAVMRKAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
           N    VL + SI  L + 
Sbjct: 128 NQMQQVLAEQSILMLSKQ 145


>gi|289423544|ref|ZP_06425345.1| RRF2-family transcriptional regulator [Peptostreptococcus
           anaerobius 653-L]
 gi|289156046|gb|EFD04710.1| RRF2-family transcriptional regulator [Peptostreptococcus
           anaerobius 653-L]
          Length = 152

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+     P  +  IA+   IS+ +L +I   L KA +V++VRG
Sbjct: 1   MKLSTKGKYGLKAMFELALSKTGEPVSLKHIAKQQNISDQYLEQIFSSLKKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D++K  E      +C    K  C    SC    V  K  ++  
Sbjct: 61  AQGGYMLSKDPKEITVADILKVLEGDMAFTDCLLD-KDACENFNSCATKYVWAKIKDSIE 119

Query: 120 DVLTQYSIECLVRNRSS 136
            V    S++ +V +  S
Sbjct: 120 QVTMAISLQDMVDDYES 136


>gi|317500549|ref|ZP_07958771.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089351|ref|ZP_08338251.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898059|gb|EFV20108.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405414|gb|EGG84949.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 142

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +  + P  I+ I+    ISE +L +++  L KAGIV +VRG
Sbjct: 1   MKLSTKGRYGLRALIDLAQNGGEQPVSITSISTRQDISERYLEQLMSMLKKAGIVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +  + I++ DV++A E S    +C        C +  SC    V +K  ++ 
Sbjct: 61  AGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCVTKYVWKKINDSI 120

Query: 119 FDVLTQYSIECLVR 132
              + +  ++ LV+
Sbjct: 121 NQTVDEIKLDQLVK 134


>gi|269217073|ref|ZP_06160927.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
 gi|269129210|gb|EEZ60295.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
          Length = 168

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H       + +IA    ISE +L  IL+ LVK G++  +RG
Sbjct: 26  MMISTKGRYALRVMVDLAEHMSCSYTPLKEIARRQEISEKYLESILKVLVKNGLLVGLRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116
           + GG RL R     T+ ++++ TE       C    +  C  +GSC    + R   K +N
Sbjct: 86  KGGGYRLTRDPSLYTVGEILRLTEGGLAQVPCLDEDESSCDRMGSCRTVEMWRGLDKVIN 145

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 146 DYLDGIT 152


>gi|262376138|ref|ZP_06069368.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter lwoffii SH145]
 gi|262308739|gb|EEY89872.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter lwoffii SH145]
          Length = 157

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+  ++    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPSEKTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L +++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLAIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + S+  LV
Sbjct: 119 DYLEKISLADLV 130


>gi|300816522|ref|ZP_07096743.1| Rrf2 family protein [Escherichia coli MS 107-1]
 gi|300906007|ref|ZP_07123731.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300929285|ref|ZP_07144761.1| Rrf2 family protein [Escherichia coli MS 187-1]
 gi|301302595|ref|ZP_07208725.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|301325941|ref|ZP_07219362.1| Rrf2 family protein [Escherichia coli MS 78-1]
 gi|300402174|gb|EFJ85712.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300462778|gb|EFK26271.1| Rrf2 family protein [Escherichia coli MS 187-1]
 gi|300530752|gb|EFK51814.1| Rrf2 family protein [Escherichia coli MS 107-1]
 gi|300842120|gb|EFK69880.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|300847294|gb|EFK75054.1| Rrf2 family protein [Escherichia coli MS 78-1]
 gi|315255522|gb|EFU35490.1| Rrf2 family protein [Escherichia coli MS 85-1]
 gi|324019356|gb|EGB88575.1| Rrf2 family protein [Escherichia coli MS 117-3]
          Length = 125

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL + A  I I DVV+  E   
Sbjct: 12  ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 122


>gi|239918539|ref|YP_002958097.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|281415252|ref|ZP_06246994.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|239839746|gb|ACS31543.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
          Length = 169

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 13/142 (9%)

Query: 3   LTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           L+ +   G+    +C +      +  P   + +AEA  +S  +L K LQ L   G+V + 
Sbjct: 2   LSMQLPNGVEWTAHCLVVLEQFGSTQPVPSAALAEAYGLSPTYLNKHLQKLAANGLVTST 61

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTS 109
            G+ GG  L RPA +IT+ DVV A +    +  C        F     +    G C + S
Sbjct: 62  PGQAGGFALARPAQEITLADVVDALDGRGPIFRCTEIRCQGLFKERSAEIKASGPCRIAS 121

Query: 110 VLRKALNAFFDVLTQYSIECLV 131
            +R+A +A+   L+Q SI  L 
Sbjct: 122 AMRQAEDAWRSSLSQVSITDLA 143


>gi|227499551|ref|ZP_03929658.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227218310|gb|EEI83564.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 133

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 61/101 (60%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A ++      +S+I++   +SE +L ++++ L K G++ + RG
Sbjct: 1   MKLSTRGRYGLRAMCYLASNSSRGYISVSEISDKLNLSENYLEQLIRLLKKEGLISSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            +GG ++ R  D++T+ D+++  E +  +++C  S  ++C 
Sbjct: 61  PKGGYKITRDLDELTVGDILRVLEGNITISDC-VSGDVNCD 100


>gi|159899482|ref|YP_001545729.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892521|gb|ABX05601.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 142

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ + +YG+R L   A H  Y   + Q   IAE   ISE +L ++L  L KAG++ +V
Sbjct: 1   MRLSTKGEYGVRALFDLAQH--YGEGLVQSHEIAERQAISENYLNQLLIALRKAGLITSV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSC 105
           RG +GG +L RP   I++LD +   E         AS    D  L+G  
Sbjct: 59  RGPQGGHQLARPPQAISLLDAILVLEGPLLPTPEGASLDTFDAGLLGEV 107


>gi|326384426|ref|ZP_08206106.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
 gi|326196771|gb|EGD53965.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
          Length = 176

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD G+RV+M  A   +  +   ++A+   +S   + K++  L + G+V + RGR
Sbjct: 1   MQLTRFTDIGLRVVMALAADPEASHTSRRLADDLDLSYTHVAKVVSRLAELGVVHSSRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +     +  +  + +  E    V +C       CPL  +C L   L  A  AF+D
Sbjct: 61  SGGLGITELGPRAGVGWLARHLEGDGPVVDC--EGPTPCPLRSACRLRGALAAAQEAFYD 118

Query: 121 VLTQYSIECLVRNRSSIK 138
            L + +++ L+ + +  +
Sbjct: 119 SLDRLTVQDLIADPTGAR 136


>gi|188582606|ref|YP_001926051.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346104|gb|ACB81516.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           populi BJ001]
          Length = 188

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +HL+  TDYG+R+LM    +          IA+   IS   L KI Q LV+AG+VE  +G
Sbjct: 19  LHLSLHTDYGLRLLMRLTLVEPGAWIATPTIAQRFGISVHHLQKIAQALVRAGVVEARQG 78

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGVRL +    I +  +V   E    V +C    +  C L+  C L   L  A  AFF
Sbjct: 79  RAGGVRLAQNPRDIRLGRLVAELEGVGTVVDC---RRDPCRLLSRCRLKWALDAAEQAFF 135


>gi|303327293|ref|ZP_07357735.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863281|gb|EFL86213.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 140

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +T Y  R+L Y A H  + P   + +A    IS  F+ +IL+ L  AGI  +VRG
Sbjct: 1   MKLSAKTRYAARILFYMAKHVMNEPISSNLLAAKTGISSQFIEQILRQLRLAGITGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  +++T   +VK  E    +A C   +  +C   G C +            
Sbjct: 61  AKGGHILLRKPEELTFGCIVKLMEGGIELAGCL-ENPGNCSRFGDCAVRKAWESLQGTLD 119

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L   ++E L+R+    K++F+A
Sbjct: 120 GALESITMEDLLRD----KELFSA 139


>gi|239982229|ref|ZP_04704753.1| putative transcriptional regulator [Streptomyces albus J1074]
 gi|291454076|ref|ZP_06593466.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357025|gb|EFE83927.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 153

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-----DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M LT+ TD  +RVLM  A+ +     D P    ++A    +      K +  L   G+VE
Sbjct: 1   MRLTRFTDLALRVLMRLAVEDPKATDDLPT-TREVAAGMRVPYTHTAKAVARLQHLGLVE 59

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
             RGR GG+ L       ++  +V+  E +  V EC  +    CPL  +C L   LR+A 
Sbjct: 60  ARRGRGGGLTLTAAGRSASVGALVRELEGTGDVVECEGAEP--CPLRSACRLRGALRQAQ 117

Query: 116 NAFFDVLTQYSIECLV 131
            AFF  L   ++  L 
Sbjct: 118 EAFFAALDPLTVGGLA 133


>gi|254491678|ref|ZP_05104857.1| FeS assembly SUF system regulator [Methylophaga thiooxidans DMS010]
 gi|224463156|gb|EEF79426.1| FeS assembly SUF system regulator [Methylophaga thiooxydans DMS010]
          Length = 163

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + + K TDYGI ++ Y A + D  +    IAEA  +    + K+L+ L   G++++ RG 
Sbjct: 2   LRMGKLTDYGIVLMSYLAANRDVQHSAHTIAEAVKVPLPTVRKVLKSLSHGGLLKSERGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L    D+I++ +++ A E    + EC  S +  C     C + +   +  NA F 
Sbjct: 62  MGGYSLNNSPDKISVAEIITAIEGPIALTECV-SDESHCEQETHCAVQTNWTRINNAVFH 120

Query: 121 VLTQ 124
            L +
Sbjct: 121 ALDE 124


>gi|121535959|ref|ZP_01667753.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
 gi|121305451|gb|EAX46399.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
          Length = 148

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   A+H    P  +  +A+   ISE +L +++  L KAG V++VRG
Sbjct: 1   MKLSTKGRYGVAAMYDLALHYGQGPISLKNVAKRQGISEHYLEQLMGILRKAGYVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D+++  E      +C  +    C     C    V  K  ++  
Sbjct: 61  SQGGYTLTKDPAEITVGDIIRIMEGPIAPVDCLLTDNNSCKRADICVTRGVWAKVRDSIS 120

Query: 120 DVLTQYSIECLVR 132
            VL   S+  L R
Sbjct: 121 QVLDSISLADLCR 133


>gi|150017088|ref|YP_001309342.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903553|gb|ABR34386.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  TK T+Y +  ++Y  + N    +  +S +AE   +S  +L KIL  LVKA ++E+  
Sbjct: 1   MKYTKATNYALHTIVYM-MENAKSEKLSVSALAEHFNLSTTYLSKILTQLVKADLIESTP 59

Query: 59  GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG  L +    I+ +DV+KATE   S FV     + K        C +  V+ +A N
Sbjct: 60  GANGGYVLRKDMRSISFMDVIKATEGTGSLFVCNLNENSK--------CLIEKVMSEAEN 111

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
              + L    +  L +N+S+ K
Sbjct: 112 VLENYLEDKKLYDLTQNKSNCK 133


>gi|167750161|ref|ZP_02422288.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
 gi|167656904|gb|EDS01034.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
 gi|291531912|emb|CBK97497.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
           70/3]
 gi|291556686|emb|CBL33803.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 145

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L+  A H  D    + +IA+   +S+ +L +I+  L K+ I+ T RG
Sbjct: 1   MKISTKGRYVLRMLIDLAEHQGDGYIPLKEIAQRQGVSKKYLEQIVPMLNKSDILRTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116
            +GG RL +  D+ T+ D+++ TE S     C  S  ++C     C   S+   L K +N
Sbjct: 61  FQGGYRLAKAPDKYTVGDILRLTEGSLAPVACLESGVVECDRSEHCATLSLWQGLYKVIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 EYLDSVT 127


>gi|284046052|ref|YP_003396392.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Conexibacter woesei DSM 14684]
 gi|283950273|gb|ADB53017.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
          DSM 14684]
          Length = 152

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +TDY +R  +   A+ +++P +  +IA A  I   FL  IL  L + GIV + RG
Sbjct: 1  MRISAKTDYAVRAAVELAAVTDEHPLKSERIATAQEIPLRFLENILVQLRQGGIVVSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            GG RL  P ++IT+ DV++A +            K+D
Sbjct: 61 AEGGYRLALPPEEITVADVIRAIDGPLAAVSGERPEKLD 99


>gi|187778845|ref|ZP_02995318.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
           15579]
 gi|187772470|gb|EDU36272.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
           15579]
          Length = 148

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI +   P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    IT+ D+++  E    ++ C       C  V  C    +  K   +  
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCGNVDCCATRLLWAKIKKSLD 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           +++   +++ +V +   I
Sbjct: 120 NIMESTTLQDMVEDYRKI 137


>gi|120602252|ref|YP_966652.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|120562481|gb|ABM28225.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
          Length = 188

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + ++E   ++  F+ +IL+ L + G+  + RG
Sbjct: 19  MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 78

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  D I++ D+V+  E    +  C       C     C   S   KA  A  
Sbjct: 79  AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 138

Query: 120 DVLTQYSIECLV 131
             L + S+  L+
Sbjct: 139 AALDETSLTALM 150


>gi|291280535|ref|YP_003497370.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
           SSM1]
 gi|290755237|dbj|BAI81614.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
           SSM1]
          Length = 142

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T R+ Y IR L   A+   +  P  + +++E   IS  +L ++   L+KAGIV +VR
Sbjct: 1   MKVTTRSRYAIRALYALALAGGDKTPVSLKKVSEMESISMKYLERLFSNLMKAGIVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115
           G  GG    +P ++IT+LDVV+  +      +C       C     C +  +   L+  +
Sbjct: 61  GIYGGYIFSKPLNEITLLDVVEVMDGVIKPVDCVEEE--GCDRSRDCSINWIWFDLKNII 118

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
             +   +T Y +   ++N+  +++
Sbjct: 119 ENYLSKITFYDLVYGLKNKYKVEE 142


>gi|282849760|ref|ZP_06259144.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|294794427|ref|ZP_06759563.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
 gi|282580697|gb|EFB86096.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|294454757|gb|EFG23130.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
          Length = 139

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H    N  I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
           + GG RL +   +  + +++ A E+S  +  C       CP+   C LT+ L + L + F
Sbjct: 61  KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119

Query: 119 FDVLTQYSIECLVRNR 134
             V+   S++ ++ ++
Sbjct: 120 RHVMEHVSLQDVMDHK 135


>gi|46580373|ref|YP_011181.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449790|gb|AAS96440.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233650|gb|ADP86504.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 170

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + ++E   ++  F+ +IL+ L + G+  + RG
Sbjct: 1   MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  D I++ D+V+  E    +  C       C     C   S   KA  A  
Sbjct: 61  AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 120

Query: 120 DVLTQYSIECLV 131
             L + S+  L+
Sbjct: 121 AALDETSLTALM 132


>gi|269103288|ref|ZP_06155985.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163186|gb|EEZ41682.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 173

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A++I +  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  PGGGYRLGDDANKIAVGMVIAAVDESVDATKCQG--KGDCQGGARC-LTHTLWRDLSS 115


>gi|224823961|ref|ZP_03697069.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224603380|gb|EEG09555.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 156

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L++ TDYG  ++ + A    +    +++A A  ++     KIL+ L +  ++ ++RG 
Sbjct: 2   LRLSRLTDYGTVIMAHMAREPGHVYSAAELAGAVGVALPTASKILKTLARKALLHSLRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I+I  V+ A E  F V EC  +  + CP   +C L    ++   A   
Sbjct: 62  HGGYLLARPPREISIAQVIDALEGPFGVTECSVAAGL-CPQENACALRRHWQRIDRALRQ 120

Query: 121 VLTQYSIECLVR 132
            L   ++E + +
Sbjct: 121 TLDGLTLEDMTQ 132


>gi|153855264|ref|ZP_01996430.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
 gi|149752263|gb|EDM62194.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
          Length = 154

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +++  P  I  +A    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRAMIDLARYSEKEPVSIGSVAARQEISERYLEQLVALLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116
             GG  L +   +I++ D+++A E S    +C A   +    C     C    V +K  +
Sbjct: 61  ASGGYVLAKKPSEISVGDILRALEGSLEPVKCAAFDTTTGEGCMASDGCVTKYVWQKIND 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           +  D + Q  ++ L++   SI
Sbjct: 121 SINDTVNQIMLDELIQESKSI 141


>gi|238018454|ref|ZP_04598880.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
 gi|237864925|gb|EEP66215.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
          Length = 139

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H    N  I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
           + GG RL +   +  + +++ A E+S  +  C       CP+   C LT+ L + L + F
Sbjct: 61  KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119

Query: 119 FDVLTQYSIECLVRNR 134
             V+ + S++ ++ ++
Sbjct: 120 RHVMERVSLQDVMDHK 135


>gi|170759452|ref|YP_001788696.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406441|gb|ACA54852.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 133

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A+  D PN+   + ++AE   +S  +L KIL  LVK G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLAM--DTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            G  GG  L +  + I+ LD++ A E +S     C  SH         C +  V+  A  
Sbjct: 59  SGANGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLESH-------SECVIKKVMLSAEG 111

Query: 117 AFFDVLTQYSIECLVRNRS 135
              + L    I  LV+  S
Sbjct: 112 KMEEELKNQKISDLVKKIS 130


>gi|126698875|ref|YP_001087772.1| transcriptional regulator [Clostridium difficile 630]
 gi|254974823|ref|ZP_05271295.1| transcriptional regulator [Clostridium difficile QCD-66c26]
 gi|255092211|ref|ZP_05321689.1| transcriptional regulator [Clostridium difficile CIP 107932]
 gi|255100296|ref|ZP_05329273.1| transcriptional regulator [Clostridium difficile QCD-63q42]
 gi|255306235|ref|ZP_05350407.1| transcriptional regulator [Clostridium difficile ATCC 43255]
 gi|255313950|ref|ZP_05355533.1| transcriptional regulator [Clostridium difficile QCD-76w55]
 gi|255516630|ref|ZP_05384306.1| transcriptional regulator [Clostridium difficile QCD-97b34]
 gi|255649729|ref|ZP_05396631.1| transcriptional regulator [Clostridium difficile QCD-37x79]
 gi|255655290|ref|ZP_05400699.1| transcriptional regulator [Clostridium difficile QCD-23m63]
 gi|260682885|ref|YP_003214170.1| RRF2 family transcriptional regulator [Clostridium difficile CD196]
 gi|260686483|ref|YP_003217616.1| RRF2 family transcriptional regulator [Clostridium difficile
           R20291]
 gi|296451274|ref|ZP_06893014.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296880374|ref|ZP_06904337.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
 gi|306519839|ref|ZP_07406186.1| RRF2-family transcriptional regulator [Clostridium difficile
           QCD-32g58]
 gi|115250312|emb|CAJ68134.1| Transcriptional regulator, Rrf2 family (Transcriptional regulator
           of cysteine biosynthesis) [Clostridium difficile]
 gi|260209048|emb|CBA62167.1| RRF2-family transcriptional regulator [Clostridium difficile CD196]
 gi|260212499|emb|CBE03426.1| RRF2-family transcriptional regulator [Clostridium difficile
           R20291]
 gi|296259880|gb|EFH06735.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296428615|gb|EFH14499.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
          Length = 148

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++ D  P  +  IA+   IS+ +L +I   L K+G+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFELALNQDNGPVSLKFIAKKQKISDQYLEQIFSSLKKSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + A+ IT+ D++   E    +++C     + C     C    V  K      
Sbjct: 61  AQGGYLLSKNAEDITVGDILVVLEGPVALSDCVLDEDV-CENSNMCVTKIVWEKMKKGIE 119

Query: 120 DVLTQYSIECLVRN 133
           DV+   +++ ++ +
Sbjct: 120 DVIDSITLKDMIND 133


>gi|291547327|emb|CBL20435.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           SR1/5]
          Length = 144

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A  +   P R+  +A+   IS+ +L +I+  L KAG V +VRG
Sbjct: 1   MRISTRGRYALRLMLDLATNYTGKPIRLKDVAKRQEISDKYLEQIISILNKAGFVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
            +GG  L +  D+ TI  +++ TE S    EC   +   C    +C +T +L K L +A 
Sbjct: 61  PQGGYALQQTPDKYTIGMILRLTEGSLSPVECLDDNGAICDREENC-VTQILWKKLDDAI 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+   ++E L+ N  ++K
Sbjct: 120 KGVVDHITLEDLM-NWQAVK 138


>gi|162148975|ref|YP_001603436.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787552|emb|CAP57148.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           T+Y +  L++  + N  P     +A+   I   F+ K+L  L KAG++E   G RGG RL
Sbjct: 8   TEYVLHSLLWL-VGNPEPVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            RPA+ I++L VV A E    +  C         F          G CG+ +V+ +A  A
Sbjct: 67  ARPAEDISVLAVVDAVEGRKSLFNCQEIRRRCALFDERPPRWATQGVCGIHAVMLRAEQA 126

Query: 118 FFDVLTQYSIECLVRN 133
               L + S+  L R+
Sbjct: 127 MRQELARTSLADLARS 142


>gi|152995372|ref|YP_001340207.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836296|gb|ABR70272.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
          Length = 162

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  +S I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDQGPVSLSDISSRQGISLSYLEQLFSKLRKKSLVNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R   +I +  +V A  ES     C    + DC    +C    +     +   
Sbjct: 61  PGGGYRLSRLNSEIFVAQIVDAVNESVDATGCKG--RSDCQSGNTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L Q S++ LVR R+ ++++
Sbjct: 119 DFLNQISLDQLVR-RNDVRQV 138


>gi|90410859|ref|ZP_01218873.1| hypothetical transcriptional regulator [Photobacterium profundum
          3TCK]
 gi|90328072|gb|EAS44383.1| hypothetical transcriptional regulator [Photobacterium profundum
          3TCK]
          Length = 172

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG RL   A+ I +  V+ A +ES    +C    K DC
Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADC 98


>gi|144897308|emb|CAM74172.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 148

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A H +D    I+ IAEA  I + FL  IL  L   G + + +G+ 
Sbjct: 2   LSSKAKYGLKAMVYLARHADDGSVLIADIAEAESIPKKFLDAILLELKNRGYLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVL---RKA 114
           GG  L +PA QI + D+V+  +      +C +        DC     C + +V+   R A
Sbjct: 62  GGYSLAKPAQQIMVGDIVRVLDGPLAPVQCVSRTAYRRCDDCRDEAGCAVRAVMGEVRDA 121

Query: 115 LNAFFDVLT 123
           + A  D  T
Sbjct: 122 IAAILDNTT 130


>gi|148380524|ref|YP_001255065.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
 gi|153931906|ref|YP_001384811.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936580|ref|YP_001388282.1| rrF2 family protein [Clostridium botulinum A str. Hall]
 gi|153940007|ref|YP_001391866.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
 gi|168180542|ref|ZP_02615206.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
 gi|170756317|ref|YP_001782184.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
 gi|170760847|ref|YP_001787887.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|226949924|ref|YP_002805015.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290008|emb|CAL84127.1| RRF2 family regulatory protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927950|gb|ABS33450.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932494|gb|ABS37993.1| rrF2 family protein [Clostridium botulinum A str. Hall]
 gi|152935903|gb|ABS41401.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
 gi|169121529|gb|ACA45365.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
 gi|169407836|gb|ACA56247.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|182668574|gb|EDT80553.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
 gi|226841762|gb|ACO84428.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295319890|gb|ADG00268.1| rrF2 family protein [Clostridium botulinum F str. 230613]
          Length = 148

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI +   P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    IT+ D+++  E    ++ C       C  +  C    +  K   +  
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           +++   +++ +V +   I
Sbjct: 120 NIMESTTLQDMVEDYKKI 137


>gi|227499166|ref|ZP_03929301.1| transcriptional regulator [Acidaminococcus sp. D21]
 gi|226904613|gb|EEH90531.1| transcriptional regulator [Acidaminococcus sp. D21]
          Length = 163

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 19/147 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +Y +  L+Y AI     +  I ++A    ISE +L KI   L K G+V  V G
Sbjct: 1   MSISVGVEYALHCLIYLAIPTTSRSIGIKEMAAFQGISETYLSKIFMKLRKKGLVSAVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKI-----DCPLVGSC 105
            +GG RL R AD+IT  DVV+A E   +  +C            H++     +CP    C
Sbjct: 61  VKGGYRLSREADEITFWDVVEAIEGPHYRFQCAEIRQHMAIVDPHELPPSFSECP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVR 132
            ++ V++ A + +   L   +I  L R
Sbjct: 117 LISEVMKGAEDQYRTYLKGRTIGWLYR 143


>gi|54307944|ref|YP_128964.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|81615497|sp|Q6LU63|ISCR_PHOPR RecName: Full=HTH-type transcriptional regulator iscR
 gi|46912370|emb|CAG19162.1| hypothetical transcriptional regulator [Photobacterium profundum
          SS9]
          Length = 172

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG RL   A+ I +  V+ A +ES    +C    K DC
Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADC 98


>gi|307326576|ref|ZP_07605770.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
 gi|306887770|gb|EFN18762.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
          Length = 154

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T ++DY +R +   A     P    Q+A    I   FLF IL+ L  A +V +VRG 
Sbjct: 1  MRITAKSDYAVRAMAELAAAEGSPLTAEQVATRQDIPLRFLFGILRELRLAHLVRSVRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA +IT+ D ++A +
Sbjct: 61 EGGYLLARPAKEITLADAIRAMD 83


>gi|110596721|ref|ZP_01385011.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341408|gb|EAT59868.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
          Length = 137

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  + Y +    D    + ++A+   +S+ FL K +Q L +AGI  +V+G
Sbjct: 2   LQVSRKFEYGLHAVTYLSTKGVDRVVTVKEMADDIGVSQEFLSKAMQSLKRAGIARSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   +IT+ D+  A E +  +  C       C +  SC     +    N   
Sbjct: 62  VKGGYSLGRKPGEITVADIAIAIEGAPHLMRC-GKKLASCEISSSCHHRDYMNSLQNKIQ 120

Query: 120 DVLTQYSIECLVRN 133
           D++   +I  L+R 
Sbjct: 121 DLMASTTIASLLRK 134


>gi|297162887|gb|ADI12599.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
          Length = 161

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  L   A   D   +   IA A  I   FL  IL  L + G+V + RG
Sbjct: 1  MQISARADYAVRAALELAAAGPDTSLKAEAIAAAQGIPHKFLEGILGDLRRGGLVTSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL RPAD+I I DV++  +
Sbjct: 61 GNGGYRLARPADEIAIADVIRVAD 84


>gi|148270395|ref|YP_001244855.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
          RKU-1]
 gi|170288979|ref|YP_001739217.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281412702|ref|YP_003346781.1| BadM/Rrf2 family transcriptional regulator [Thermotoga
          naphthophila RKU-10]
 gi|147735939|gb|ABQ47279.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
          petrophila RKU-1]
 gi|170176482|gb|ACB09534.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
 gi|281373805|gb|ADA67367.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
          naphthophila RKU-10]
          Length = 140

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          K   Y +R+L+  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 7  KHVRYALRLLVRLSLENR-PMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGF 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
           L +  D+I+ LDV+   E+   + +C
Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDC 92


>gi|302340142|ref|YP_003805348.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637327|gb|ADK82754.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 138

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  Y IR ++  A   ++ P  I  +A    IS  FL +I   L K+GI+ + RG
Sbjct: 1   MRITTKGRYAIRAVLRLAQAEEHRPIPIRILAAQEGISPEFLEQIFFRLRKSGIINSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL + A+ +T++++  A EE FF++ C    +  C     C   GL     + L 
Sbjct: 61  PGGGFRLMKEANDLTLMEIFDAVEEGFFLSPCTQDGE-QCDREERCLVHGLWEHTYEMLQ 119

Query: 117 AFFDVLT 123
           ++F  +T
Sbjct: 120 SYFGAIT 126


>gi|160943690|ref|ZP_02090921.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444864|gb|EDP21867.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103977|emb|CBL01521.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii SL3/3]
          Length = 143

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H       + ++A    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHQSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C       C  + +C  T  + K LN   
Sbjct: 61  KGGGYRLTRSPDQYTVSEILMLTEGSLAPVSCLTPGASACARMANC-RTYEMWKGLN--- 116

Query: 120 DVLTQY 125
           D+++ Y
Sbjct: 117 DLISDY 122


>gi|23099471|ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831]
 gi|22777700|dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 139

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A+ +   P  +  IA+   +SE +L ++  PL  AG+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT  DV++  E    + E     K   P   S  L+  +R A+    
Sbjct: 61  AYGGYMLSREPKSITASDVLRVLEGPLTIVEGMEEEK---PAQQSLWLS--IRDAVK--- 112

Query: 120 DVLTQYSIECLVRNRS 135
           DVL Q +++ LV + +
Sbjct: 113 DVLDQTTLQDLVDHEN 128


>gi|239908355|ref|YP_002955096.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239798221|dbj|BAH77210.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 155

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    +   R   IA    I + FL  IL  L + G V++ RG
Sbjct: 7   MWVTQKCQYALRALFELAKRQGEGAVRSVDIAANQAIPKRFLEVILHQLRQGGFVDSQRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSC---GLTSVLRKAL 115
           + GG  L RP   IT+ D+++  +      +C       DC L GSC   GL    R+AL
Sbjct: 67  KEGGFFLSRPPANITVGDIIRFIDGPMTPVDCQLDRPHFDCALKGSCVFLGLWDEAREAL 126

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
              +D  T   ++ LV   S++
Sbjct: 127 ERVYDTKT---LQELVDKESAM 145


>gi|304407560|ref|ZP_07389212.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
          curdlanolyticus YK9]
 gi|304343511|gb|EFM09353.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
          curdlanolyticus YK9]
          Length = 139

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M   A   + P  +  IAE   +SE +L +++ PL  AG+V++VRG
Sbjct: 1  MKISTKGRYGLTIMMELSAKFGEGPISLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L + ADQIT  DV++  E
Sbjct: 61 AYGGYILSKAADQITAGDVIRVLE 84


>gi|257783930|ref|YP_003179147.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
 gi|257472437|gb|ACV50556.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
          Length = 198

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY IR+L     +      +   AE   I   F   I   LV AG++ + RG 
Sbjct: 1   MEISRKTDYAIRMLSSLVRNPKKLLSVRDAAEENDIPYSFARSIQHDLVIAGVIVSTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVL---RKAL 115
           RGG+ L     Q+++LD+V+A +   F++ C     +   CP   SC    +     K L
Sbjct: 61  RGGMMLAIDPTQVSVLDIVEAVQGPVFISNCEWAGPNNEPCPRHNSCYFGPLWCSAEKTL 120

Query: 116 NAFFDVLTQYSI 127
             FF  +T + +
Sbjct: 121 RNFFASVTLHQV 132


>gi|158320700|ref|YP_001513207.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140899|gb|ABW19211.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
           oremlandii OhILAs]
          Length = 179

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H  D P  +  +AE   IS+ +L +++  L KAG+V++VRG
Sbjct: 29  MRLSTKGRYGLKAMFDLALHYGDGPISLKSVAERQSISDHYLEQLIAGLRKAGLVKSVRG 88

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            +GG  L     +IT+ D+++  E     ++C
Sbjct: 89  AQGGYMLAENPSKITVGDIIRVLEGPLGPSDC 120


>gi|313639464|gb|EFS04318.1| putative transcriptional regulator [Listeria seeligeri FSL S4-171]
          Length = 138

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L +PA  I+ LDV++A E   +FF  +   +H    P    C +  V+  A   
Sbjct: 61  VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDP-KNHAETKP---HCLIGEVMGNAEQQ 116

Query: 118 FFDVLTQYSIECLV 131
             D L+  +I  +V
Sbjct: 117 MEDYLSNQTIGSIV 130


>gi|291288301|ref|YP_003505117.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885461|gb|ADD69161.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 143

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T ++ Y IR +    +   +  P  ++QIAE   IS  +L +I   L K+GIVE  R
Sbjct: 1   MKITTKSRYAIRSIFALVLMGGDTKPVALTQIAEHEDISRKYLEQIFIKLKKSGIVEGSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKAL 115
           G +GG  L R    I + +V+ A +    +++C  + +  C    SCG   L S L+K +
Sbjct: 61  GAQGGYVLARNPSDIRLKEVIYAMDGPVNISDC--TQEESCDNFSSCGINWLWSGLKKTV 118

Query: 116 NAFFDVLT 123
           + + D +T
Sbjct: 119 DDYLDNIT 126


>gi|15644275|ref|NP_229327.1| hypothetical protein TM1527 [Thermotoga maritima MSB8]
 gi|4982094|gb|AAD36594.1|AE001800_4 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 140

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          K   Y +R+L+  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 7  KHVRYALRLLVRLSLENR-PMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGF 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
           L +  D+I+ LDV+   E+   + +C
Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDC 92


>gi|311899855|dbj|BAJ32263.1| putative transcriptional regulator NsrR [Kitasatospora setae
           KM-6054]
          Length = 167

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R+ M  A+   D      ++AE   +      K++  L   G+VE  RG
Sbjct: 1   MRLTKSTDIALRIAMRLAVLDEDQTPTTREVAEVVGVPYNHAAKVVSRLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  +V+  E    V  C       CPL  SC L   LR+A  AFF
Sbjct: 61  RGGGLALTAAGRTGSLGRIVRELEGVGDVVGC--EDDPPCPLRHSCRLRGALRRAQEAFF 118

Query: 120 DVLTQYSIECLVRN 133
             L   +++ LV +
Sbjct: 119 ATLDPLTVDDLVAD 132


>gi|262196471|ref|YP_003267680.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262079818|gb|ACY15787.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 273

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +  +A A  I E  + K+L+ LV+AG+V +VRG  GG  L RPA  I++ +V  A E   
Sbjct: 95  VRALAAATGIPEPTVRKVLKTLVRAGVVGSVRGTHGGYALARPASAISVAEVATAFEGPI 154

Query: 87  FVAECFASHKIDCPLVGSCGL 107
            V EC +        VG+CGL
Sbjct: 155 AVTECASEE-----TVGTCGL 170


>gi|313902381|ref|ZP_07835784.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
          subterraneus DSM 13965]
 gi|313467312|gb|EFR62823.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
          subterraneus DSM 13965]
          Length = 141

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG+R +   A  +   P  + ++A+A  + E +L +++ PL K G+V++VRG
Sbjct: 1  MQLSTRGRYGVRAMYELARRYGQGPVPLREVADAQQLPENYLEQLMAPLRKGGLVQSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
           +GG  L R   QIT+ D+V+
Sbjct: 61 AQGGYVLARDPAQITVADIVR 81


>gi|311900466|dbj|BAJ32874.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 167

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 17/139 (12%)

Query: 6   RTDYGIRVLMYC---------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           RT  G+   ++C         A     P   +++A    +S  +L K+LQ L +AG++ +
Sbjct: 2   RTSEGVEWALHCCLTLVWVGGAEAAPEPVPSARLAAMFELSPTYLNKVLQRLTRAGLLTS 61

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--------CGLT 108
           V G RGGVRL R  ++IT++DVV A E    +  C    +     VG+        CG+ 
Sbjct: 62  VSGPRGGVRLARAPERITVMDVVAAVEGPDPLFACAEIRQRGASAVGAGPREFARPCGVA 121

Query: 109 SVLRKALNAFFDVLTQYSI 127
             +R+A  A+   L+  ++
Sbjct: 122 GAMRRAELAWRRELSAQTV 140


>gi|163814456|ref|ZP_02205845.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
 gi|158450091|gb|EDP27086.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
          Length = 144

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 67/136 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  +I++     +  +A  C +S+ +L ++   L+KAG + +VRG 
Sbjct: 1   MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL  PA++IT+  V++  E      +       D  +V +  +  V      A  +
Sbjct: 61  RGGYRLNTPAEEITVGMVLREIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLETAINN 120

Query: 121 VLTQYSIECLVRNRSS 136
           VL   +I  L R  S 
Sbjct: 121 VLDNKTIADLTREYSD 136


>gi|320008624|gb|ADW03474.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 150

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD  +RVLM   +  D   P    ++A    +      K++  L   G+V+  R
Sbjct: 1   MRLTRFTDVALRVLMRLTVTTDGEDPPTTREVAATMEVPYTHAAKVVARLQHLGLVDARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC       CPL  +C L S LR+A  AF
Sbjct: 61  GRGGGLTLTTAGRSASIGTLVRELEGPGEVVEC--EGDTPCPLRSACRLRSALRRAEEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  L 
Sbjct: 119 YASLDPLTVSDLA 131


>gi|159186104|ref|NP_356355.2| hypothetical protein Atu4299 [Agrobacterium tumefaciens str. C58]
 gi|159141238|gb|AAK89140.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 179

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T   +YG+  L++ A     P     +AE   IS  FL KI   L KAGIV    G +
Sbjct: 3   QMTVGVEYGLHCLLWLASSPGAPLSSRDLAELQGISPSFLAKIFPKLEKAGIVSASEGIK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L RP   IT+L+VV   E    + +C         F          G C + +V+ 
Sbjct: 63  GGYLLARPPGDITVLEVVDTIEGRKPLFDCQEIRGRCAVFRQRPPSWATKGVCAIHAVML 122

Query: 113 KALNAFFDVLTQYSI 127
           +A  A  D L   ++
Sbjct: 123 RAEKAMRDSLASQTL 137


>gi|156740844|ref|YP_001430973.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus
          castenholzii DSM 13941]
 gi|156232172|gb|ABU56955.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus
          castenholzii DSM 13941]
          Length = 146

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +YG+R L+  A    + P +   I     I E +L +IL  L +AG++E++RG
Sbjct: 1  MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRAGLIESIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG RL RP  QIT+LD + A E      + 
Sbjct: 61 PQGGHRLARPPSQITVLDALTALEGPLLALDS 92


>gi|108797889|ref|YP_638086.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866984|ref|YP_936936.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768308|gb|ABG07030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
 gi|119693073|gb|ABL90146.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
          Length = 153

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  A       R++   IA     SE  + K +  L + G+V   R
Sbjct: 1   MQLTRFTDLGLRTMMLLAAGEVDGQRVTTRTIAAGANASEHHIAKAVARLAELGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V EC       CPL+ +C L   +  A  AF
Sbjct: 61  GRVGGLTLTDAGRDASVGWLVRRLEGDREVIECGGEDP--CPLLAACRLRKAMSDAKEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L +Y+I  L 
Sbjct: 119 YRELDRYTITDLA 131


>gi|170721542|ref|YP_001749230.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           W619]
 gi|169759545|gb|ACA72861.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           W619]
          Length = 179

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L+Y      +   + +  +A+   + + +L K+   L +A +V    G RGG R
Sbjct: 9   EYGIHCLLYLVDERGDTRESSVRDLAQLQGVPQEYLAKVFTKLARAKLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RP+D+IT+LD+V A +    + +C         F          G+C + +V+  A  
Sbjct: 69  LARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFEGSPPGWATEGTCAIHAVMLGAQK 128

Query: 117 AFFDVLTQYSIECLVR 132
              + L Q +I  L R
Sbjct: 129 RMEEALAQQTILDLAR 144


>gi|110802830|ref|YP_699071.1| hypothetical protein CPR_1756 [Clostridium perfringens SM101]
 gi|110683331|gb|ABG86701.1| rrf2 family protein [Clostridium perfringens SM101]
          Length = 153

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI +   P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    +++C     + C  V  C    + +K   +  
Sbjct: 61  AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +V    +++ +V +  ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138


>gi|86742682|ref|YP_483082.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86569544|gb|ABD13353.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 177

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES- 85
           + Q+A     +  +L K LQ L KAG+V +V G RGG RL RPADQI +LDVV A E S 
Sbjct: 28  VQQLAALHGGNPAYLAKHLQALSKAGVVVSVLGPRGGYRLGRPADQIRLLDVVDAIEGSS 87

Query: 86  --FFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECLV 131
             F   E         P       C + + +  A +A+   L   +I  +V
Sbjct: 88  PVFLCTEIRQRGPAALPPANYRAPCAIAAAVSSAEDAWRQALASTTIADIV 138


>gi|284042783|ref|YP_003393123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Conexibacter woesei DSM 14684]
 gi|283947004|gb|ADB49748.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
           DSM 14684]
          Length = 153

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 21/143 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +TDY +R  +  A ++ + P +   IA A  I   FL KIL  L +AGIVE+ RG
Sbjct: 1   MRIGAKTDYALRAALELAANDGERPVKAEAIATAQQIPPRFLEKILNDLRRAGIVESRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PAD+I + DV++A               ID PL    G     ++     +
Sbjct: 61  VEGGHLLASPADEIAVADVIRA---------------IDGPLANVSG-----KRPHELSY 100

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           D   +   E LV  R++++ + +
Sbjct: 101 DGAAEKLPELLVAARAALRDVLD 123


>gi|78355271|ref|YP_386720.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217676|gb|ABB37025.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 199

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++  + Y  R+L+    H D  P   + +A+   IS  F+ K+++PL +AG+VE+VRG
Sbjct: 1   MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLKQAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
             GG  L    +QI++ DVV+A E    +  C    +  C    SC       G++  L 
Sbjct: 61  ATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPE-RCRSKESCRTRQMWSGVSRALE 119

Query: 113 KALNA--FFDVLTQYSIEC 129
           + L+A    D+L   + EC
Sbjct: 120 RTLDAITLLDLLNDPAPEC 138


>gi|134298630|ref|YP_001112126.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
           reducens MI-1]
 gi|134051330|gb|ABO49301.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           reducens MI-1]
          Length = 149

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  +  +AE   ISE +L +++  L K G+V+++RG
Sbjct: 1   MRLSTKGHYGLKAMFDLAMHYGSEPIPLKVVAERQNISEHYLEQLIAVLRKVGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +P   I + DVV+A E      +C +      C  V  C    +  +  ++ 
Sbjct: 61  AQGGYILAKPPSDIKVGDVVRALEGPIAPLDCVSELEPTVCEKVDYCISRDIWARVRDSI 120

Query: 119 FDVLTQYSIE--CLVRNRSSIKKI 140
            +VL   ++E  CL   ++   +I
Sbjct: 121 AEVLDSITLEDMCLEAQKAQSNQI 144


>gi|300920798|ref|ZP_07137199.1| Rrf2 family protein [Escherichia coli MS 115-1]
 gi|300412221|gb|EFJ95531.1| Rrf2 family protein [Escherichia coli MS 115-1]
          Length = 125

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL + A  I I DVV+  E   
Sbjct: 12  ISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGDVVRELEPLS 71

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            V  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 72  LV-NCSSEF---CHITPACRLKQALSKAVQSFLMELDNYTLADLVEENQPLYKLL 122


>gi|291460624|ref|ZP_06600014.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416815|gb|EFE90534.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 167

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y +  L+Y A +  +   RI  ++    ISE +L K    L KAGI+ +  G
Sbjct: 1  MKFSVAVEYALHGLIYMAGLEENKSIRIQDMSRFQGISESYLSKTYAKLAKAGIISSAAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
           +GG RL +PA+QI+  DV++A E
Sbjct: 61 AKGGYRLSKPAEQISFWDVIEAIE 84


>gi|323499942|ref|ZP_08104901.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
 gi|323315183|gb|EGA68235.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
          Length = 168

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C  + K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGEDAYTIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRN 133
           D L   ++  L+++
Sbjct: 119 DFLNNITLGELMKD 132


>gi|153852854|ref|ZP_01994291.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
 gi|149754496|gb|EDM64427.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
          Length = 148

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ ++ YG+R L+  AI++      ++ IAE   IS  +L ++   L KAGIV++++G
Sbjct: 1  MKLSMKSRYGLRALIDLAINSKTEQVALNSIAERNKISPQYLEQVFASLRKAGIVKSIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L RP  +IT+  +++A E  + + +
Sbjct: 61 SQGGYFLSRPPQEITVSSIIEALEGDYRIED 91


>gi|167629120|ref|YP_001679619.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591860|gb|ABZ83608.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 147

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++ +Y I  L+  A+     + +S+ IA+   I   FL +I+  L + G V++ RG
Sbjct: 1   MEITRKAEYAIAALLDLALLPPGESTLSKDIAKRQAIPSNFLPQIMAALSRHGWVDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL   A+ IT+  V++  E    +  C       CP    C L  V  +A +A  
Sbjct: 61  AGGGVRLAVEAETITLQAVIEVIEGPIAINRCLVGGG-SCPNQAGCPLHHVWARAQSAML 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DVL + +I  LV  + +I +
Sbjct: 120 DVLAKTTIADLVTAKRAIGE 139


>gi|328957508|ref|YP_004374894.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
           17-4]
 gi|328673832|gb|AEB29878.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
           17-4]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+ +     R+  +A+   IS  +L KIL  L KAG++ +  G
Sbjct: 1   MKYSKATNYALHSMVHLAMESTSGAVRVEDLAKRQKISPTYLSKILTKLSKAGLIVSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R  ++ T LD+++A E    +  C  SH  D      C +   +  A +   
Sbjct: 61  VKGGYRLLRSPEECTFLDIIQAIEGYESLLNCTMSH--DGKWNRHCLIERAVADAEDKLK 118

Query: 120 DVLTQYSIECLVRNR 134
           D L + +I  +++ R
Sbjct: 119 DELARKTIADILKQR 133


>gi|150390216|ref|YP_001320265.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950078|gb|ABR48606.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
           metalliredigens QYMF]
          Length = 149

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   AIH  + P  +  IAE   IS+ +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFDLAIHQGEGPIPLKHIAERQKISDHYLEQLIASLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L    D++ + ++++  E     +EC        C     C    +  K   + 
Sbjct: 61  AQGGYMLANSPDKVVVGEIIRVLEGPLGPSECVLEEDPTACARADYCVTRVIWEKIRVSI 120

Query: 119 FDVLTQYSIECLVRN 133
            DV+   +++ +V +
Sbjct: 121 SDVIDNITLQDMVDD 135


>gi|257791023|ref|YP_003181629.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|257474920|gb|ACV55240.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
          Length = 186

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       +    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
           RGG+ L C PA  +T+L+V++A +    ++ C       C     C    + + A   LN
Sbjct: 61  RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118

Query: 117 AFFDVLT 123
           A+F  +T
Sbjct: 119 AYFGAIT 125


>gi|323485134|ref|ZP_08090486.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
           WAL-14163]
 gi|323401564|gb|EGA93910.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
           WAL-14163]
          Length = 146

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R ++Y A      +  ++I EA  ++++F+ K+L+ L  AG+V +  G 
Sbjct: 1   MQLTMTTDYALRCMLYLAGKEGLSSS-TEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---TSVLRKALNA 117
            GG RL + A +I +LD++   E++  +  C     + C    +C +      L+  L +
Sbjct: 60  TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 118

Query: 118 FF 119
           FF
Sbjct: 119 FF 120


>gi|196228245|ref|ZP_03127112.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
 gi|196227648|gb|EDY22151.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
          Length = 209

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57
           M L+KR +Y +R L+   I  +    + +I E      L   FL +IL  L  AG +ET 
Sbjct: 1   MKLSKRGEYALRALIDFGIAYELGRPLLKIGELVEKERLPVKFLEQILTQLRGAGYIETK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKA 114
           RG+ GG  L +P  QI++  V++  +       C    A  +  CP    CGL  ++   
Sbjct: 61  RGKAGGYFLAKPPKQISLGQVIRLIDGPLAPISCVSVTAYERCSCPDEAHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQY 125
            NA   +L +Y
Sbjct: 121 RNAIARILDRY 131


>gi|189499741|ref|YP_001959211.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189495182|gb|ACE03730.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 132

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  ++Y A         + ++A     S+ FL K LQ L KAGIV +V+G
Sbjct: 2   LQVSRKFEYGLHAVVYLARRESGEVVTVKEMAADIGFSQEFLAKALQQLKKAGIVLSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            +GG RL    ++ITI D+ +A E    +  C +S +  C +V SC   S + K
Sbjct: 62  VKGGYRLAGLPEEITISDIARAIEGPPRLMRC-SSERGKCEIVSSCSNRSTMFK 114


>gi|238927889|ref|ZP_04659649.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238884222|gb|EEQ47860.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 149

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L   A+H  Y   +     IA +  ISE +L +++ PL +AG+VE+V
Sbjct: 3   MKLSTKGRYSVTALYELALH--YGKGVVPLHAIAASQGISEHYLEQLMVPLRRAGLVESV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRK 113
           RG +GG  L  P  Q+TI  ++ A E    + +C      +    C   G+C    +  +
Sbjct: 61  RGAQGGYTLALPPGQVTIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEE 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
              +   VL   ++  LV+
Sbjct: 121 VCESINSVLNNIALSDLVQ 139


>gi|220935228|ref|YP_002514127.1| iron-sulphur cluster assembly transcription factor IscR
          [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996538|gb|ACL73140.1| iron-sulphur cluster assembly transcription factor IscR
          [Thioalkalivibrio sp. HL-EbGR7]
          Length = 162

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  AIHN+  P  ++ I+    IS  +L ++   L K G+V + RG
Sbjct: 1  MRLTTKGRYAVTAMLDLAIHNEQGPISLADISHRQGISLSYLEQLFARLRKQGLVVSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG  L RPAD+  I DV+ A +E      C  +   DC
Sbjct: 61 PGGGYSLSRPADKTAIADVIAAVDEKVDTTRCGGA--ADC 98


>gi|209545272|ref|YP_002277501.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532949|gb|ACI52886.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 180

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           T+Y +  L++  + N  P     +A+   I   F+ K+L  L KAG++E   G RGG RL
Sbjct: 8   TEYVLHSLLWL-VGNPEPVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            RPA+ I++L VV A E    +  C         F          G CG+ +V+ +A  A
Sbjct: 67  ARPAEDISVLAVVDAVEGRKSLFNCQEIRGRCALFDERPPRWATQGVCGIHAVMLRAEQA 126

Query: 118 FFDVLTQYSIECLVRN 133
               + + S+  L R+
Sbjct: 127 MRQEMARTSLADLARS 142


>gi|46578685|ref|YP_009493.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603749|ref|YP_968149.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448097|gb|AAS94752.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563978|gb|ABM29722.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311232556|gb|ADP85410.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 165

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +   + YG R+L+  A+H  + P  +  +A    IS+ +L K+ +PL +AG++ + RG
Sbjct: 1   MRILTNSRYGTRMLLDIALHQRERPVLMKDVAARLSISQKYLEKLSRPLKEAGLLVSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA +IT+ DVV+  E    +  C    +  C     C    + ++  +A F
Sbjct: 61  PTGGHMLGRPAVEITVGDVVRVMEGGDELVGC-GRDEAACSHAPGCLTRMIWKECSHAMF 119

Query: 120 DVLTQYSIECLVR 132
             L   + + L+R
Sbjct: 120 ARLDAITFDELLR 132


>gi|121535527|ref|ZP_01667335.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
 gi|121305855|gb|EAX46789.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
          Length = 146

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 13/127 (10%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A + +        +AE   I + FL KI++ L +AG++++ RG
Sbjct: 1   MQLNQATDYAFRIVLHLACLPSGQVVNGQTLAEQENIPQRFLLKIMRSLTQAGLIKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-------DCPLVGSCG-----L 107
             GG  L R  ++ITI D++ A E    +  C A           +CP+    G     L
Sbjct: 61  TDGGFALARRPEEITIWDIICAIEGEVTIHRCLADRTACSKHCTHECPVHAVLGQIQAEL 120

Query: 108 TSVLRKA 114
            + LR+A
Sbjct: 121 VAALRQA 127


>gi|331092089|ref|ZP_08340920.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402290|gb|EGG81861.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 131

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+  TDYGIR+++Y   +N+  +    +AE   I + ++ K+ + L  A IV + +G 
Sbjct: 1  MQLSATTDYGIRIVLYLIKNNEIISS-GVLAEQLEIPKTYVLKVTKKLELANIVTSYQGV 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           GG+ L     QIT+ DV+ A E +  + +C    
Sbjct: 60 NGGIGLAGDPAQITLWDVISAVESTTVINKCMEQE 94


>gi|254460966|ref|ZP_05074382.1| transcriptional regulator, putative [Rhodobacterales bacterium
           HTCC2083]
 gi|206677555|gb|EDZ42042.1| transcriptional regulator, putative [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 110

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           ISE +L KI   L K G V +  GR GG+ L      I+I  V++A +++  VAECF S+
Sbjct: 4   ISENYLVKIATQLSKGGFVVSESGRGGGLTLAVLVVDISIGAVLRALKKNEPVAECFGSN 63

Query: 96  KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
              C ++ +C L   L +A  AFF  L  YS+  + + +  +K +
Sbjct: 64  T-SCAILPTCSLRGPLLEAQEAFFAALVGYSLADVAKAKGYLKDL 107


>gi|168178952|ref|ZP_02613616.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
 gi|170756920|ref|YP_001783003.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
 gi|226950815|ref|YP_002805906.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|169122132|gb|ACA45968.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
 gi|182670202|gb|EDT82178.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
 gi|226841169|gb|ACO83835.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 133

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A+  D PN+I    ++AE   +S  +L KIL  LVK G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLAM--DTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G  GG  L +  + I+ LD++ A E    + +C     +D P    C +  V+  A   
Sbjct: 59  SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112

Query: 118 FFDVLTQYSIECLVR 132
             + L    I  LV+
Sbjct: 113 MEEELRNQKISDLVK 127


>gi|325122368|gb|ADY81891.1| hypothetical protein BDGL_001305 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 164

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D P     +AE   +S  F+ KI   L KAG+V    G RGG  L RPA +I+ LD+V
Sbjct: 3   NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRGGYLLARPAHEISFLDIV 62

Query: 80  KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
            A E    + EC         F +   D    G C + +V+ +A  A  D L  +++
Sbjct: 63  NAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 119


>gi|313114322|ref|ZP_07799857.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623377|gb|EFQ06797.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 143

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  + H       + +IA    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLSEHQSEKYVPLKEIAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C   +   C  + +C  T  + K L+   
Sbjct: 61  KGGGYRLTRSPDQYTVGEILMLTEGSLAPVSCLTPNATPCSRMANC-RTYEMWKGLD--- 116

Query: 120 DVLTQY 125
           D+++ Y
Sbjct: 117 DLISNY 122


>gi|302539851|ref|ZP_07292193.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302457469|gb|EFL20562.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
          Length = 152

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + DY +R  +  A+  +D   +   IA +  +   FL  IL  L + G+V + RG
Sbjct: 1  MRISAKADYAVRAALELAVAADDTSLKAEVIAASQGVPHKFLEGILGDLRRGGLVVSQRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
           +GG RL RPAD+ITI DV++
Sbjct: 61 GKGGYRLARPADEITIADVIR 81


>gi|270158822|ref|ZP_06187479.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
 gi|289166385|ref|YP_003456523.1| hypothetical protein LLO_3073 [Legionella longbeachae NSW150]
 gi|269990847|gb|EEZ97101.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
 gi|288859558|emb|CBJ13523.1| putative conserved hypothetical protein [Legionella longbeachae
           NSW150]
          Length = 153

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG  V++Y A H         IA    ++   + KIL+ L  AG++ +VRG 
Sbjct: 2   LRISKLADYGTVVMVYLARHAQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L RPA +I++  ++ A EE     EC A H   C L   C +    R    A   
Sbjct: 62  TGGYQLRRPATEISVSQIIFALEEHRGFTECSA-HPNGCSLQDVCTIQGNWRLISQAIET 120

Query: 121 VLTQYSIECLVR 132
            L   S+  L +
Sbjct: 121 ALDSVSLATLAK 132


>gi|222099072|ref|YP_002533640.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
 gi|221571462|gb|ACM22274.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 12/139 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVRGR 60
            T R++Y +R+++  A   D    +++I E     +   F  KIL  L K+GIVET RG+
Sbjct: 2   FTMRSEYALRLMIVMAKEYDRYLSMTEILEKAKNSVPREFAEKILYTLRKSGIVETKRGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG RL RP  +I + D++       F+ +  A    D   CP    C + S+ ++    
Sbjct: 62  TGGYRLARPPKEIRVSDII-------FLLDRKARVFFDMPGCPDELDCVIRSLWKRVEEE 114

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   ++E LV+ +  
Sbjct: 115 IEKVLGSVTLEDLVKEQEE 133


>gi|77919457|ref|YP_357272.1| putative Fe-S cluster regulator protein [Pelobacter carbinolicus
          DSM 2380]
 gi|77545540|gb|ABA89102.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
          carbinolicus DSM 2380]
          Length = 147

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +R ++  ++ N D P     IA+   IS  FL +IL  L +  IV +VRG
Sbjct: 1  MRLSTKAQYAVRAMVRLSLENADTPVSSKAIADLEGISVTFLEQILAKLRRGKIVRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG  L RPA++I + +++++ EE+     C 
Sbjct: 61 PGGGFVLARPAEEIRVDEIIESVEEALMPVACM 93


>gi|315301845|ref|ZP_07872874.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
 gi|313629782|gb|EFR97886.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
          Length = 138

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1  MKYSKATNYALHTMVYLANLSAEKTVGVKELAIKQNVSPTYLSKVLTMLVKASFVESITG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG +L +PA+ I+ LDV++A E
Sbjct: 61 VNGGYKLAKPANDISFLDVIQAIE 84


>gi|188584942|ref|YP_001916487.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349629|gb|ACB83899.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 155

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+ + +YG+R L++ A  +N+ P  + +I++   IS  +L +I   L +  +V +VRG
Sbjct: 5   VKLSTKGEYGVRALVHLACNYNEGPISLREISKIEDISYQYLEQIFLDLRRNSLVLSVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L     +IT+ DV++A E       C A    S   +C    +C    V  +  
Sbjct: 65  AKGGYTLASHPKEITVGDVIRAVEGPIAPVSCVAKSTNSENTECDRSSTCAPRGVWLELR 124

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKI 140
           +   +VL +++++ L    + I+K+
Sbjct: 125 DRISEVLDEFTLQDLAVTDNDIEKL 149


>gi|297620718|ref|YP_003708855.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
           WSU 86-1044]
 gi|297376019|gb|ADI37849.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
           WSU 86-1044]
          Length = 144

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+  ++Y +R+++  A   +    +  ++A+   +SE +  KILQ L +AG+V+  +G  
Sbjct: 2   LSSTSEYALRIMVILAHQKENSFLKGKELAKETKVSEAYSAKILQLLNRAGLVQAQKGLG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101
           GG  L R AD+I++ D++ A +      EC    A HK  CPL
Sbjct: 62  GGYLLSRSADEISLFDIINAVDPFTRFDECPLGIAEHKTLCPL 104


>gi|224823937|ref|ZP_03697046.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224604392|gb|EEG10566.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 160

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+ H + P  ++ I+E   IS  +L ++   L +A +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALRHGNGPVTLAGISERQSISLSYLEQLFGKLRRAELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + A+QI++ D++ A +E     +C    + +C     C +T  L   LNA  
Sbjct: 61  PGGGYTLAKSAEQISVADIITAVDEPVDATQCGG--RENCHDNHRC-MTHDLWTNLNATI 117

Query: 119 FDVLTQYSIECLV 131
           FD L++ ++  LV
Sbjct: 118 FDYLSKVTLFSLV 130


>gi|299143924|ref|ZP_07037004.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518409|gb|EFI42148.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 137

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY  R+  Y A +        +IA    ISE F  +IL+ L  AGI    RG 
Sbjct: 1  MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           GG  L +P ++IT+ D++ A +    V +C  S 
Sbjct: 61 AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSE 95


>gi|257056284|ref|YP_003134116.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
 gi|256586156|gb|ACU97289.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
          Length = 149

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L K TD  +R++M  A+    +      ++A+A  +      K++  L + G+VE  R
Sbjct: 1   MRLMKGTDLALRIVMRLAVVGERESAPTTREVADAVSVPYSHAAKVVTRLQRLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C       CPL  +C L + LR A +AF
Sbjct: 61  GRSGGLALTAAGRAASLGRLVRELEGVGDVVGC--EDDPPCPLRTACRLRAALRSAQDAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L   +IE LV
Sbjct: 119 YAALDPLTIEDLV 131


>gi|226362111|ref|YP_002779889.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240596|dbj|BAH50944.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 160

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  ++ + V++  A + +D P   + +A +  +   +L K LQ LV+AGI+ +V G
Sbjct: 1   MRMSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASH-KIDCP---LVGSCGLTSVLR 112
             GG  L R A  I++LDVV A    EE+F   E  A     D P   L   C ++  +R
Sbjct: 61  AAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMR 120

Query: 113 KALNAFFDVLTQYSIE 128
           KA  A+   L   S++
Sbjct: 121 KADLAWRRELAGQSVD 136


>gi|323694029|ref|ZP_08108212.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
           WAL-14673]
 gi|323501915|gb|EGB17794.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
           WAL-14673]
          Length = 165

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R ++Y A      +  ++I EA  ++++F+ K+L+ L  AG+V +  G 
Sbjct: 10  MQLTMTTDYALRCMLYLAGKEGLSSS-TEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG RL + A +I +LD++   E++  +  C 
Sbjct: 69  TGGYRLAKRAKEIVLLDIILLFEKTMKINRCL 100


>gi|317488261|ref|ZP_07946828.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316912643|gb|EFV34185.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 186

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       +    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LN 116
           RGG+ L C PA  +T+L+V++A +    ++ C       C     C    + + A   LN
Sbjct: 61  RGGLALNCDPA-AVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLN 118

Query: 117 AFFDVLT 123
           A+F  +T
Sbjct: 119 AYFGAIT 125


>gi|325291884|ref|YP_004277748.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
 gi|325059737|gb|ADY63428.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
          Length = 167

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 10/108 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84
           + +AE   +S  +L K LQ L  AGIV TV G +GG RL R  D+IT+LD+V A E    
Sbjct: 29  AALAEFHGVSTSYLLKHLQLLSGAGIVSTVPGPKGGYRLARTTDKITLLDIVLAVEGPQP 88

Query: 85  SFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSI 127
           +F  AE     +   PL G      CG+ + + KA  A+   L + SI
Sbjct: 89  AFRCAEI--RQRGPNPLPGRYFTKPCGINAAMLKAEKAYRAELAKTSI 134


>gi|313898036|ref|ZP_07831575.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
          HGF2]
 gi|312957064|gb|EFR38693.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
          HGF2]
          Length = 130

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ ++ Y  R L+  AI+  D+P  I++I     ISE +L  I   L KAG + + RG
Sbjct: 1  MKLSTKSRYAARCLIDLAIYGKDHPLSITEIGAREEISERYLELIFATLKKAGFIASARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
           +GG +L RP + ITI D++   E
Sbjct: 61 SQGGYQLIRPIESITIYDIIALME 84


>gi|300024335|ref|YP_003756946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526156|gb|ADJ24625.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 184

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +Y +  L++     +       +A+   IS  FL KI   L KAGIVE   G RGG RL 
Sbjct: 9   EYALHCLLWLTEPVEQRPSSRDLADLQGISPAFLAKIFAKLEKAGIVEASGGIRGGYRLA 68

Query: 68  RPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAF 118
           RP  +I++L+VV A E S  + +C         F +        G C + +V+ +A    
Sbjct: 69  RPTSKISVLNVVDAVEGSKPLFDCQEVRGRCALFENKPPKWATKGVCEIHAVMLRAEKVL 128

Query: 119 FDVLTQYSIECL 130
            D L++ ++  L
Sbjct: 129 RDELSKTTLASL 140


>gi|225408021|ref|ZP_03761210.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
           DSM 15981]
 gi|225042454|gb|EEG52700.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
           DSM 15981]
          Length = 135

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A H  D    + +IA    ISE +L  +L+ LV+  ++  +RG
Sbjct: 1   MMISTRGRYALRVMLDLAEHCADGYIPLKEIAHRQDISEKYLEIVLKVLVRNNLLTGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + T+ ++++ TE S     C      +CP   +C    V +K      
Sbjct: 61  KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACADEGNTECPRRETCPSRPVWQKLDTLIN 120

Query: 120 DVLTQYSIECLVRN 133
           D L   ++E L+++
Sbjct: 121 DYLDGITLEDLLKS 134


>gi|291545758|emb|CBL18866.1| rrf2 family protein (putative transcriptional regulator)
           [Ruminococcus sp. SR1/5]
          Length = 137

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY +RV+   A+  +    +S+I E   I+  F +KIL+ L  AG+VE  RG 
Sbjct: 1   MFITRESDYAMRVIR--ALMWEPRLSVSEICERESITAPFAYKILKKLQNAGLVEGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R  +++++ ++  A +    + EC  +    CP  G  G+       L    D
Sbjct: 59  HGGYALKRDPEELSLYEIYSAIDPDMSIIECL-NGTYQCPRNGQDGVPCHAHDELQEIQD 117

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L       ++R R S+K +F 
Sbjct: 118 QLW-----TMLR-RKSMKDLFG 133


>gi|227872831|ref|ZP_03991143.1| possible transcription regulator [Oribacterium sinus F0268]
 gi|227841326|gb|EEJ51644.1| possible transcription regulator [Oribacterium sinus F0268]
          Length = 174

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  L+  A      N +S  ++AE   IS  +L +I+  +VK G +++VR
Sbjct: 28  MMISTKGRYALSTLIDIAEQEKKGNPVSIKEVAERQGISVKYLEQIIALMVKGGFLKSVR 87

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L + A  I++ D++ A E +    +C      +C    SC    + ++   A 
Sbjct: 88  GAKGGYLLLKEAKDISVGDILDAAEGTLSPVDCVKEGS-NCERSASCPTFPLYKEIDEAI 146

Query: 119 FDVLTQYSIECLVR 132
           + V+ +YS+E L++
Sbjct: 147 YAVVNRYSLEDLLQ 160


>gi|212710633|ref|ZP_03318761.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
           30120]
 gi|212686714|gb|EEB46242.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
           30120]
          Length = 165

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNR 134
             L+  S++ LV+N+
Sbjct: 120 SFLSSISLDELVKNQ 134


>gi|125973237|ref|YP_001037147.1| BadM/Rrf2 family transcriptional regulator [Clostridium
          thermocellum ATCC 27405]
 gi|256003715|ref|ZP_05428703.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
 gi|281417437|ref|ZP_06248457.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
 gi|125713462|gb|ABN51954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum ATCC 27405]
 gi|255992276|gb|EEU02370.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
 gi|281408839|gb|EFB39097.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
 gi|316940532|gb|ADU74566.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 1313]
          Length = 143

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG++ ++  A+HN + P  +  IAE   + E +L ++   L KAG + +VRG
Sbjct: 1  MWLSTKGRYGLKAMLDLALHNGEGPVALKSIAERQNLPENYLEQLFATLKKAGHITSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L +  D ITI  ++++ E S    +C
Sbjct: 61 AQGGYLLSKDPDSITIGSILRSLEGSLAPVDC 92


>gi|307323873|ref|ZP_07603082.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890322|gb|EFN21299.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 158

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + DY +R L   A   D P     IA +  I   FL  + + L +AG+V + RG 
Sbjct: 23  MQISAKADYAVRALAELAADTDRPLTCEAIATSQGIPFRFLKAVFRDLRQAGLVRSQRGC 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L R   ++T+ D+V A + +F     E         P   + GL  V R   +  
Sbjct: 83  EGGYWLARDPAEMTLADIVLAVDGAFLTLRGERLDDLGYHGP---AAGLPGVWRGMEDHV 139

Query: 119 FDVLTQYSIECLVRNR 134
             VLT  ++  LVR R
Sbjct: 140 RQVLTATALSDLVRER 155


>gi|94496618|ref|ZP_01303194.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
 gi|94423978|gb|EAT09003.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
          Length = 136

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY + VLM  A  +    R+  + +A    I      K++  L  AG++E+ R
Sbjct: 1   MRLSSFADYAV-VLMSAAARHCGGARMNATTLAAETGIPLPTAQKLVSRLSGAGLLESSR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GGVRL RP   IT+ DVV+A E    +  C      DC L   C +   +  A NA 
Sbjct: 60  GTGGGVRLSRPPATITLADVVEAVEGPIAMTACAEMGAHDCNLERDCRIRPHMNVANNAI 119

Query: 119 FDVLTQYSIECLVR 132
              L   +I  L R
Sbjct: 120 RQALAGVTIASLTR 133


>gi|298530491|ref|ZP_07017893.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509865|gb|EFI33769.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 143

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+    YG R+++  A HN+  P RI  IA+   ISE +L KI++ L KAG+V+ +RG
Sbjct: 1  MKLSTTIRYGTRLMLDMAEHNETGPIRIKTIAQRQGISEKYLEKIVRLLRKAGLVDGLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
            GG  L  P ++IT+  +++A +    +  C   
Sbjct: 61 PGGGYVLAVPPEKITMGAILEAVQGRIELCPCLGE 95


>gi|193212159|ref|YP_001998112.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
          NCIB 8327]
 gi|193085636|gb|ACF10912.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
          NCIB 8327]
          Length = 142

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L K TDY +R L+   + +D       I++   I   FL +ILQ L++ G+VE+  G  G
Sbjct: 4  LNKETDYAVRALISLGMKSDGWVSARAISDEQAIPYQFLRRILQELIRNGLVESKEGAGG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92
          GV+L +   +I + DV++  +    ++EC 
Sbjct: 64 GVKLAKEPGEIGVADVIEIFQGKVQLSECM 93


>gi|315647231|ref|ZP_07900344.1| transcriptional regulator, BadM/Rrf2 family protein
          [Paenibacillus vortex V453]
 gi|315277433|gb|EFU40762.1| transcriptional regulator, BadM/Rrf2 family protein
          [Paenibacillus vortex V453]
          Length = 161

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +K TDY +  L++  +     N  I +++    +SE +L KI+  L + GIV  V G
Sbjct: 1  MQFSKSTDYALHALIHLGLSERNNNIGIKELSATLGVSETYLSKIMSKLRQDGIVRAVPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L +  +QIT LDV++  E    + EC
Sbjct: 61 VNGGYELAKSPEQITFLDVIQVIEGRQHLFEC 92


>gi|153872299|ref|ZP_02001233.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
 gi|152071233|gb|EDN68765.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
          Length = 130

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  AI H   P  ++ I++   IS  +L ++   L K G+V++ RG
Sbjct: 1  MRLTTKGRYAVTAMLDLAINHTKGPITLADISQRQGISLSYLEQLFSRLRKRGLVDSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL R AD I I DV+ A +E+    +C
Sbjct: 61 PGGGYRLSRTADTIVIADVIAAVDETVDATKC 92


>gi|315924766|ref|ZP_07920983.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621665|gb|EFV01629.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 139

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  YG  VL  C + + Y   P  I +IA+    S+ +L ++   L KAG++ ++
Sbjct: 1   MKLSTKGQYG--VLAMCELASHYGKGPMSIKEIADKQHFSDAYLEQLFSKLKKAGLIRSL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L R    I + +V+ A E       C A   +DC    SC   ++     N+
Sbjct: 59  RGAHGGYQLTREPSAIVVGEVIDAVEGPIEFCGCDA-EAVDCNRAQSCPTVNLWMDVQNS 117

Query: 118 FFDVLTQYSIECLV 131
              V+   S++ L+
Sbjct: 118 IRSVIDHRSLQDLI 131


>gi|167772123|ref|ZP_02444176.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
           17241]
 gi|167665921|gb|EDS10051.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
           17241]
          Length = 130

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T   DY +R++   A H    +  S ++ A  ++  F  KIL+ LV  GIV + +G 
Sbjct: 1   MYITLEADYAVRIVDCLAQHQMRMDAKS-LSAATGVTLRFALKILRKLVAEGIVRSYKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
           +GG  L RPA +I + +V++  E    ++ C       C  V  C 
Sbjct: 60  QGGYELARPAGEIALGEVIEIVEGPIVISRCVGDDTFQCSRVEKCA 105


>gi|283957139|ref|ZP_06374603.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791315|gb|EFC30120.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 136

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y +   + P  +  +A    I + FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
           +GG  L +  +Q TI ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KGGFALIKEPNQYTIKEIVNSAEKKDISVFECSGGT---CPNNKEKNCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++E +++N 
Sbjct: 117 VDEFLDSITLEDIMKNN 133


>gi|227484972|ref|ZP_03915288.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237127|gb|EEI87142.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 133

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ R  YG+R + Y A + D    P  +S+I+E   +SE +L ++++ L K G++++ 
Sbjct: 1   MKLSTRGRYGLRAICYIAENQDKGFIP--VSEISEKLNLSENYLEQLVRVLKKDGLIKSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALN 116
           RG +GG ++      ITI  ++++ E     +EC  S K DC     +  L S L   +N
Sbjct: 59  RGPKGGYKIKSDLSSITIGQILRSLEGDMTTSEC-VSGKFDCSEKCDAYDLFSKLDYLIN 117

Query: 117 AFFDVLTQYSI 127
           A  D +T  +I
Sbjct: 118 AAIDSITLENI 128


>gi|257460500|ref|ZP_05625601.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
           RM3268]
 gi|257441831|gb|EEV16973.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
           RM3268]
          Length = 137

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y + + M C    +    +  I+    IS  FL KILQ L +AG++ + +G 
Sbjct: 1   MLFTKASEYAL-LSMICIAGKEESMDVDSISSELGISRSFLAKILQNLARAGLLNSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP 100
           +GG  L R AD+IT+ +++K+ E     V +C A     CP
Sbjct: 60  KGGFVLARNADKITLSEIIKSAERRKATVFDCTAEGIDACP 100


>gi|329934735|ref|ZP_08284776.1| putative transcriptional regulator of sulfate
          adenylyltransferase, Rrf2 family [Streptomyces
          griseoaurantiacus M045]
 gi|329305557|gb|EGG49413.1| putative transcriptional regulator of sulfate
          adenylyltransferase, Rrf2 family [Streptomyces
          griseoaurantiacus M045]
          Length = 152

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R ++  A+     P +   +AE   IS  FL  IL  L + G+V + RG
Sbjct: 1  MRISARADYAVRAVVELAVRQGGGPVKAEAVAEVQDISHKFLEGILGDLRRGGLVASRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R A+ IT+ D+++A +
Sbjct: 61 GNGGYRLAREAEAITVADIIRAVD 84


>gi|218282015|ref|ZP_03488327.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
 gi|218217002|gb|EEC90540.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
          Length = 142

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L+  A HND     +  IA    IS+ +L +I+  L K+ +V++ RG
Sbjct: 1   MKISTKGRYALRLLIDLAQHNDSGFITLKDIAARQNISKKYLEQIVPILTKSQMVQSNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
            +GG +L +  DQI + DV+ ATE +     C  S    CP    C       GL  V++
Sbjct: 61  FQGGYKLAKNIDQICVYDVLVATEGNLSCVACLDSDVNTCPRKEDCATLYIYEGLNQVIK 120

Query: 113 KALNAF 118
             L   
Sbjct: 121 TYLKGI 126


>gi|163790053|ref|ZP_02184488.1| transcriptional regulator [Carnobacterium sp. AT7]
 gi|159874753|gb|EDP68822.1| transcriptional regulator [Carnobacterium sp. AT7]
          Length = 137

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+  N+   R+  +A+   IS  +L KIL  L KAG++ +  G
Sbjct: 1   MKYSKATNYALHSMVHLAMESNNEAVRVEDLAKHQRISPTYLSKILTKLAKAGLITSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL    ++ T LD+++A E    +  C  SH  D      C +   +  A +   
Sbjct: 61  VKGGYRLLLSPEKCTFLDIIQAIEGQESLLNCTMSH--DGKWNRDCLIERAVADAEDKMK 118

Query: 120 DVLTQYSI 127
           D L   +I
Sbjct: 119 DELAHKTI 126


>gi|302039295|ref|YP_003799617.1| putative transcription factor IscR [Candidatus Nitrospira defluvii]
 gi|300607359|emb|CBK43692.1| putative Transcription factor IscR [Candidatus Nitrospira defluvii]
          Length = 159

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAGI 53
           + L+K+ DYG+  L + A  N Y +          +IAE   I    L K+LQ L K+GI
Sbjct: 2   LKLSKKADYGLMALQHIA-SNQYGDVAQARVVNTKEIAEEYHIPVELLAKVLQTLSKSGI 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSV 110
           +E+  G +GG  L +   +ITI  V+++ E    + +C  SH+ D   C     C + + 
Sbjct: 61  IESHNGPKGGYLLGKNPREITIAHVLESLEGPLGIMDC--SHEKDGDACMQREHCNIRTP 118

Query: 111 LRKALNAFFDVLTQYSIECLV 131
           L K  ++ + +L   +++ ++
Sbjct: 119 LLKIQSSIYQLLNNMTLQDMM 139


>gi|78776353|ref|YP_392668.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
          denitrificans DSM 1251]
 gi|78496893|gb|ABB43433.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
          denitrificans DSM 1251]
          Length = 134

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P +I +IA    + + +L ++L  L +AG+VE++RG +GG  L RP   I ILD++ A E
Sbjct: 26 PMQIKEIALNANVPQNYLEQLLGKLRRAGLVESIRGAKGGYILARPPQDIKILDILMALE 85

Query: 84 ESFFVAECFASHKI 97
          +   + +    H I
Sbjct: 86 DDLKIVDTLVEHPI 99


>gi|256783279|ref|ZP_05521710.1| hypothetical protein SlivT_02175 [Streptomyces lividans TK24]
          Length = 146

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +TK TD  +R +M  A+    D P    ++AE   +      K +  L   G+VE  RGR
Sbjct: 1   MTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     + ++  +V+  E    V +C   +   CPL G+C L   LR A  AF+ 
Sbjct: 61  GGGLTLTDLGRRASVGWLVRELEGEAEVVDCEGDNP--CPLRGACRLRRALRDAQEAFYA 118

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 119 ALDPLTVTDLV 129


>gi|168181991|ref|ZP_02616655.1| oligopeptide transport system permease protein OppB [Clostridium
           botulinum Bf]
 gi|237796821|ref|YP_002864373.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674817|gb|EDT86778.1| oligopeptide transport system permease protein OppB [Clostridium
           botulinum Bf]
 gi|229263736|gb|ACQ54769.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 133

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A+  D PN+   + ++AE   +S  +L KIL  LVK G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLAM--DTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G  GG  L +  + I+ LD++ A E    + +C     +D P    C +  V+  A   
Sbjct: 59  SGVNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCC----LDSP--SECVIKKVMLSAEKK 112

Query: 118 FFDVLTQYSIECLVR 132
             + L    I  LV+
Sbjct: 113 MEEELRNQKISDLVK 127


>gi|154250436|ref|YP_001411261.1| BadM/Rrf2 family transcriptional regulator [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154372|gb|ABS61604.1| transcriptional regulator, BadM/Rrf2 family [Fervidobacterium
           nodosum Rt17-B1]
          Length = 141

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58
           M +T +++Y I++++  A+ N   N   +I + C   +   F  KIL  L + GI+   R
Sbjct: 1   MAITMKSEYAIKIMILIAVENKRVN-AREIVKKCRERLPLEFAEKILADLARNGILHAYR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG  L +  D+IT+ DVV + +      +CF           SC +  +    L   
Sbjct: 60  GRGGGYELAKKLDEITVYDVVSSVDNPSDTIKCFVDINDKATSPESCTVNKIWESVLEKM 119

Query: 119 FDVLTQYSIECLVRN 133
            ++L   +++ L  +
Sbjct: 120 QEILKSITLKELTED 134


>gi|34557102|ref|NP_906917.1| hypothetical protein WS0691 [Wolinella succinogenes DSM 1740]
 gi|34482817|emb|CAE09817.1| LIN1550 PROTEIN [Wolinella succinogenes]
          Length = 137

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 9  YGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          YG+  L Y  ++   P+ +IS+I++   I + +L +IL  L KAG ++++RG +GG  L 
Sbjct: 10 YGLGALYYLTLNLHKPSIQISEISQNTNIPQNYLEQILANLKKAGFLKSIRGPKGGYALA 69

Query: 68 RPADQITILDVVKATEESFFVAEC 91
           P +QI + D+++A E      EC
Sbjct: 70 MPPEQIIVYDILEALEGGLCAIEC 93


>gi|315186460|gb|EFU20220.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6578]
          Length = 138

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG++ L++ A+ H   P  + +IAE   ISE FL  +   L  AG+V + +G
Sbjct: 1   MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RP  +IT+ +VV A E    F     A    D P+         L K +  +
Sbjct: 61  KGGGYTLRRPPHRITLREVVTAFEPYVIFPLSHEADEGPDAPIWAD------LEKHIQVW 114

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +  +   +  LV+ R  I
Sbjct: 115 MEGRSLEELVGLVKRRRGI 133


>gi|328955720|ref|YP_004373053.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
          glomerans PW2]
 gi|328456044|gb|AEB07238.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
          glomerans PW2]
          Length = 150

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58
          M ++ +  Y +R+++Y A       R++    A C  IS+ +L ++++PL++AG++++VR
Sbjct: 1  MLISSKGRYALRLMIYIAAFGGDQGRVALREIAACEDISQKYLEQLVRPLMRAGLLKSVR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          G+RGG  L +PA+++   D+++  E +     C
Sbjct: 61 GKRGGYILGKPAEEVRAGDILRVAEGTTAPVAC 93


>gi|329906564|ref|ZP_08274419.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547254|gb|EGF32103.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 148

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D G+RVL+Y A      ++I+  +IA    I    L K+   L + G V+  R
Sbjct: 1   MRLTRYSDIGLRVLIYLARSGTRESQITVAEIAAQFDIPINHLIKVAGHLARTGWVDATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL   A  + +  ++   E    + +C     + C L   C L   L+  + AF
Sbjct: 61  GRNGGLRLAIDATTLHVGTILLELEGKDELIDCDG---LACHLRKDCILRDALKVGMQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D +  Y++  L   ++ 
Sbjct: 118 YDAMNGYTLADLCDGKTG 135


>gi|153812327|ref|ZP_01964995.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
 gi|149831489|gb|EDM86576.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
          Length = 134

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RVL   A+  +    +++I E   I+  F +KIL+ L K+G+V   RG 
Sbjct: 1   MLITRECDYAVRVLR--AMAEEKRVSVNEICEKELITAPFAYKILKKLQKSGMVRGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L    DQIT+ DV    +   F+ +C      DC    + G    +   L    +
Sbjct: 59  HGGYSLNCDLDQITLYDVYTTIDPGMFIIDCLEP-GYDCARNSADGQNCSVHCELAEIQE 117

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L      C +  R S+KK+ N 
Sbjct: 118 EL------CRMLKRKSLKKLING 134


>gi|326330461|ref|ZP_08196769.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
 gi|325951736|gb|EGD43768.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
          Length = 151

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +   H   P    ++AE   +S+ +L K LQ L +AGIV    GR GG  L
Sbjct: 6   GVEWSLHCCVVLSHAPGPVASGRLAELLGVSKTYLAKHLQALARAGIVRPSEGRDGGYEL 65

Query: 67  CRPADQITILDVVKATE---ESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120
            R  D++T+LDVV+A E    +F   E      +  P       CG+  V+  A  A+  
Sbjct: 66  TRAPDEVTVLDVVQAVEGRRPAFRCTEIRQQGLLAAPPERCRSMCGIAKVMADAEEAWRA 125

Query: 121 VLTQYSI 127
            L   +I
Sbjct: 126 SLAGVTI 132


>gi|237808765|ref|YP_002893205.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237501026|gb|ACQ93619.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 171

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 4   MRLTSKGRYAVTAMLDVALHAELGPVPLADISERQGISLSYLEQLFARLRKNGLVSSVRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL   ADQI +  ++ A  ES     C    +  C     C LT  L + L+A  
Sbjct: 64  PGGGYRLGADADQIAVGKIIAAVNESVDATRCHG--ESGCQGGVQC-LTHSLWRDLSARI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D L + ++  LVR ++ +K+I
Sbjct: 121 SDFLNEITLGELVR-QAEVKRI 141


>gi|149190102|ref|ZP_01868379.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
 gi|148836132|gb|EDL53092.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
          Length = 168

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL   A  I I  V+ A +ES    +C  + K DC     C LT  L + L++  
Sbjct: 61  PGGGYRLGAEASDIAIGTVIAAVDESVDATKC--AGKGDCQGGTRC-LTHTLWRDLSSRI 117

Query: 119 FDVLTQYSI-ECLVRN 133
            D L   ++ E +V N
Sbjct: 118 SDFLNNITLGELMVDN 133


>gi|326329630|ref|ZP_08195952.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
 gi|325952626|gb|EGD44644.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
          Length = 152

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 21/143 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ ++DY +R L+  A   D       ++  A  I   FL  IL  L KAG+V + RG
Sbjct: 1   MRVSAKSDYALRALIEMAAREDGKAVSAEELGRAQEIPHGFLQAILADLRKAGVVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R A  +++ DV++A               +D PLV   GL        N   
Sbjct: 61  QSGGWRLARKASDVSVADVIRA---------------VDGPLVSVYGLRPEA-VTYNERA 104

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DVL    I      R S++++F 
Sbjct: 105 DVLQHVWIAA----RDSLREVFE 123


>gi|251772796|gb|EES53357.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 157

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + LTK+ DY +  L  M  A   +  N +  IA    I    L K++Q L KAG++++  
Sbjct: 2   LKLTKKVDYALLALNLMAQAREGETSN-VRDIAGIYRIPPEILAKVMQKLSKAGLIQSHN 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             +GG  L  PA++I++L V+ A E    +  C      DC     C + S L +  N  
Sbjct: 61  APKGGYSLKIPAEKISVLKVLTAVEGPVGIVSCSDGSDKDCQQRDQCDIRSPLERLQNNI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
              L   SI  L +  + +K + + 
Sbjct: 121 LWFLEALSIRELGQEPTVMKGVTDG 145


>gi|325579030|ref|ZP_08148986.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159265|gb|EGC71399.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 151

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHAGTNPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   ADQI+I  V+ A  E+  V  C    K +C     C   S+ +   +   
Sbjct: 61  PGGGYRLALSADQISIGMVISAVNENIDVTRCLG--KGNCKGGVECLTHSLWQDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV  ++   K
Sbjct: 119 DFLDEITLAELVEKKTGKHK 138


>gi|147676569|ref|YP_001210784.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146272666|dbj|BAF58415.1| predicted transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 151

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + R  YG+R ++  A +  ++ P  + Q+AE   ISE +L +++  L K G+V +VR
Sbjct: 1   MKFSTRARYGLRAMVDLAQNYASNEPIPLFQVAERQGISEGYLEQLMTYLRKGGLVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT  ++++  E      +C +    + C    +C    +  +   +
Sbjct: 61  GAQGGYLLAREPSRITAGEIIRCLEGPLSPTDCVSEDDPEFCDRADACVTRLLWERVRES 120

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
              VL   S+E L +N   I+
Sbjct: 121 VASVLDNTSLEDLCKNADKIR 141


>gi|262274800|ref|ZP_06052611.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
 gi|262221363|gb|EEY72677.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
          Length = 174

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H++  P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSEAGPVPLADISERQGISLSYLEQLFSRLRKAGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A++I +  V+ A +ES    +C    K DC     C LT  L + L+A
Sbjct: 61  PGGGYRLGVSANEIAVGMVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSA 115


>gi|268593201|ref|ZP_06127422.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rettgeri DSM 1131]
 gi|291311249|gb|EFE51702.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rettgeri DSM 1131]
          Length = 165

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQSGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNR 134
             L+  S++ LV+N+
Sbjct: 120 SFLSSISLDELVKNQ 134


>gi|261856769|ref|YP_003264052.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Halothiobacillus neapolitanus c2]
 gi|261837238|gb|ACX97005.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
          neapolitanus c2]
          Length = 167

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+   P  ++ IA+   +S  +L ++   L +AG+V++VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHDHGDPTALADIADRQELSLSYLEQLFAQLRRAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG +L RP+ +I + ++V A +E   V  C  S + DC
Sbjct: 61 PGGGYQLTRPSTEINVAEIVIAVDEDVDVTRC--SGRGDC 98


>gi|71066031|ref|YP_264758.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
          arcticus 273-4]
 gi|71039016|gb|AAZ19324.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
          arcticus 273-4]
          Length = 170

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R  Y +  L+  A+     D    +S IA+   IS  +L ++   L K G+V ++
Sbjct: 1  MRLTTRGRYAVTALLDLALQTSQQDSAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          RG  GG  L +P DQI ++ ++ A +ES    +C
Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC 94


>gi|323698961|ref|ZP_08110873.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           ND132]
 gi|323458893|gb|EGB14758.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans ND132]
          Length = 147

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT R+ YG R+L+  A+H  N  P      A+   +S  +L K+++ L +AG V+  R
Sbjct: 1   MKLTTRSRYGTRLLLDIALHSENGSPVPSKDTADREGLSLKYLEKLIKMLKQAGYVKGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R  + I+I +V +  +    V  C       CP    C   S+   A  A 
Sbjct: 61  GPNGGNVLVRAPEDISIGEVARILDGEEQVLGCEGDPST-CPRAAVCLKRSIWDDASLAM 119

Query: 119 FDVLTQYSIECLVRN 133
           + +L  YS+  L+++
Sbjct: 120 YRMLDSYSLADLMKD 134


>gi|159184340|ref|NP_353521.2| hypothetical protein Atu0493 [Agrobacterium tumefaciens str. C58]
 gi|159139656|gb|AAK86306.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 167

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84
           + +AE   +S  +L K LQ L  AGIV TV G +GG RL R  D+IT+LD+V A E    
Sbjct: 29  AALAEFHGVSTSYLLKHLQSLSNAGIVTTVPGPKGGYRLARTTDKITLLDIVLAVEGPQP 88

Query: 85  SFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSI 127
           +F  AE     +   PL G      CG+ + + KA   +   L + SI
Sbjct: 89  AFRCAEI--RQRGPNPLPGRYFTKPCGINAAMLKAEKVYRAELAKTSI 134


>gi|257784202|ref|YP_003179419.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
 gi|257472709|gb|ACV50828.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
          Length = 150

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 5/119 (4%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y +R +   A+H  + + +  ++E   IS  +L +++  + KAG V+++RG+ GG RL R
Sbjct: 11  YALRAMADLAVHEGWVS-LGDVSERQNISRKYLEQVIALMHKAGYVDSLRGKGGGYRLTR 69

Query: 69  PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123
             +  T+ ++++A E +   A C   ++   CP + SC   ++ R   +  ++F D  T
Sbjct: 70  KPEDYTLGEILRAAEGNLAPASCLNCTNTTLCPQMESCTTINIWRDLGRMTSSFLDSKT 128


>gi|221315013|ref|ZP_03596818.1| hypothetical protein BsubsN3_14952 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
          Length = 110

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG  L    D IT  D+++  E    + +C+
Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKCW 93


>gi|116622770|ref|YP_824926.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225932|gb|ABJ84641.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 147

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRIS--QIAEACCISELFLFKILQPLVKAGIVET 56
           M LT+  DY +RV+++ A     P   R+S  +++ +    E FL K+LQ L + G++ +
Sbjct: 1   MQLTRAADYAVRVMIHLA---GLPPGTRVSRSELSTSAECPEQFLCKVLQSLTRVGLIAS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG  GG  L       ++L+VV+A E    +  C  +H   C     C    V  +A  
Sbjct: 58  HRGNTGGFELEERHRSASVLEVVQAIEGPIHLNVCL-NHDHGCSRQSWCPAHDVWAEAQR 116

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A  +VL   +I  +    SS
Sbjct: 117 ALNEVLGHATISGMAHTLSS 136


>gi|294629007|ref|ZP_06707567.1| transcriptional regulator [Streptomyces sp. e14]
 gi|292832340|gb|EFF90689.1| transcriptional regulator [Streptomyces sp. e14]
          Length = 157

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD  +RVLM  A+    D P    ++A    +      KI+  L   G++   R
Sbjct: 9   MRLLRSTDMALRVLMRLAVAGETDTPT-TREVAADMGVPYTHAAKIVAELQHRGLLTARR 67

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    VA+C       CPL   C L   LR+A  AF
Sbjct: 68  GRGGGLSLTEAGRGASIGAIVRTMEGEGDVADCTGG-DTPCPLNSDCRLRGALRRAQEAF 126

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  +V
Sbjct: 127 YAALDPLTVADMV 139


>gi|271964996|ref|YP_003339192.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
           roseum DSM 43021]
 gi|270508171|gb|ACZ86449.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
           roseum DSM 43021]
          Length = 142

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +RV M  A+     +  + Q+AE   I      K++  L   G+VE  RG
Sbjct: 1   MRLTKFTDLALRVTMRLAVAEQGTSLTTRQVAEVMAIPYTHTAKVIARLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  +V+  E    V  C    +  CPL  +C L   LR A  AF+
Sbjct: 61  RGGGLELTVAGRTASLGWLVRELEGEEEVVAC--EGETPCPLRAACRLRGALRGAQQAFY 118

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 119 ASLDPLTVNDLV 130


>gi|212696195|ref|ZP_03304323.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676824|gb|EEB36431.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 134

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG+R + Y A + D     +S I+    + E +L ++++ L K  +V + RG
Sbjct: 1  MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKKNNLVISARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           +GG +L R A  IT+ DV++A E     ++C A
Sbjct: 61 AKGGYKLSRSASDITVGDVLRALEGEMTSSQCVA 94


>gi|300023866|ref|YP_003756477.1| Rrf2 family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525687|gb|ADJ24156.1| transcriptional regulator, Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 523

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  +   A H D     +S +AE   +   +L ++  PL ++G+VE+ RG
Sbjct: 1   MELTTKGRYAVMAMADLAAHADRTAVPLSSVAERQHLPLSYLEQLFVPLRRSGLVESARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
           R GG RL +  ++I+I  V+ A EE      C   +   C +   C   GL S L +A +
Sbjct: 61  RAGGYRLSKKPEEISIAAVMAAVEEVTHFTRC-TDNDPRCSVGTPCLTHGLWSALSRATS 119

Query: 117 AFFDVLT 123
            F + ++
Sbjct: 120 EFLESVS 126


>gi|116626733|ref|YP_828889.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229895|gb|ABJ88604.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 158

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +YG+R L+      +  +  I ++++A  +S  +  K+L+ L K G V+  RG
Sbjct: 1   MKLSANEEYGLRCLVRIGYAGEGGSLTIPEMSQAEGVSPAYAAKVLRVLRKGGFVKAARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA---ECFASHKIDCPLVGSCGLTSVLRKALN 116
           + GG  L RPA+ I I DV+       F +   E  A     C     C + S+ R    
Sbjct: 61  KDGGYTLARPAEAIVIGDVMDVLGGRIFESSFCESHAGQAAICTRSIDCSVRSLWRAVQV 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   VL++ ++  L++N   +
Sbjct: 121 AVDQVLSKATLRDLLQNEEEM 141


>gi|292491985|ref|YP_003527424.1| iron-sulfur cluster assembly transcription factor IscR
          [Nitrosococcus halophilus Nc4]
 gi|291580580|gb|ADE15037.1| iron-sulfur cluster assembly transcription factor IscR
          [Nitrosococcus halophilus Nc4]
          Length = 166

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +  P  ++ I+    IS  +L ++   L K G+V++ RG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHYEQGPITLADISRRQGISLSYLEQLFARLRKKGLVDSARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL R A++I+++DV+ A +ES     C
Sbjct: 61 PGGGYRLSREAEKISVIDVISAVDESVDATRC 92


>gi|332668756|ref|YP_004451763.1| BadM/Rrf2 family transcriptional regulator [Cellulomonas fimi
          ATCC 484]
 gi|332337793|gb|AEE44376.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas fimi
          ATCC 484]
          Length = 152

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 1  MHLTKRTDYGIRV--LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ + DY +R    +  + H D  P+ +    +   +S  FL +IL  L +AGIV +V
Sbjct: 1  MRVSAKADYAVRACAELAASPHGDPVPSEVLAAGQDIPVS--FLERILGDLRRAGIVASV 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83
          RGR GG RL RPA  +T+ +V++A +
Sbjct: 59 RGRSGGYRLARPAGDVTLAEVIRAVD 84


>gi|56963070|ref|YP_174797.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909309|dbj|BAD63836.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 139

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  + +  ++       + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMAFLTLNEKNEAIGVEQLAKMQNLSPTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
            +GG RL +   + + LDV++A E    +  C   H  + P    C +  V+  A
Sbjct: 61  VKGGYRLLKRQKETSFLDVIQAIEGQTSLFHCSLDHN-ELPHNHGCLIEQVMMNA 114


>gi|332296703|ref|YP_004438625.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
 gi|332179806|gb|AEE15494.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
          Length = 152

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R ++  A+ N D    +  I+    IS  +L +I   L K G++ +VRG
Sbjct: 1   MKISTRGRYALRFMIDLALQNSDQFIALKDISGRQEISVKYLEQITSLLGKYGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116
           ++GG +L +PA Q TI ++++ TE +     C  +   +CP    C        L   +N
Sbjct: 61  QQGGYKLAKPASQYTIGEILRITEGNLAPVACLDTAVNECPRCNQCKTLPFWEGLAATIN 120

Query: 117 AFFDVLT 123
           ++ D +T
Sbjct: 121 SYLDSVT 127


>gi|167759052|ref|ZP_02431179.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
 gi|167663459|gb|EDS07589.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
          Length = 173

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +++  P  I+ I+    ISE +L +++  L KAG+V+++RG
Sbjct: 22  MKLSTKGRYGLRAIIDLARYSEEEPVSINNISIRQDISERYLEQLVALLKKAGLVKSIRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L + A++I++ DV++A E S    +C A +  + C     C    V +K  ++ 
Sbjct: 82  ATGGYVLAKRAEEISVGDVLRALEGSLEPVKCAAFYSDEGCMASDGCVTKYVWQKINDSI 141

Query: 119 FDVLTQYSIECLVRNRSSI 137
              + +  ++ LVR    I
Sbjct: 142 NKTVDEIMLDELVRESKMI 160


>gi|77918499|ref|YP_356314.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544582|gb|ABA88144.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 132

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +T+  DY IR +++ +      +P  + +++    I   FL KIL  L+ A +V + RGR
Sbjct: 2   ITREADYCIRTILHLSRPEQRKHPVPVDELSRQMTIPAPFLRKILAKLINADLVHSHRGR 61

Query: 61  RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ +    +QI++L++++ A  +   + +C  S  + C   G+C +   ++K  N   
Sbjct: 62  NGGLTIKGEPEQISLLEILQVADGKGLLLNQCLESEGV-CTHQGTCTVHDAMKKLQNVME 120

Query: 120 DVLTQYSIECLV 131
           + L   + + L+
Sbjct: 121 NHLKAITFDQLI 132


>gi|229133660|ref|ZP_04262486.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
 gi|228649695|gb|EEL05704.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
          Length = 133

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L    + I+ LD++ A E    + EC   H+  C
Sbjct: 59  SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCLHHEPGC 100


>gi|261406703|ref|YP_003242944.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261283166|gb|ACX65137.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
          Y412MC10]
          Length = 161

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +K  DY +  L++ A    D+   I +++    +SE +L KI+  L + GIV  V G
Sbjct: 1  MQFSKSVDYALHALIHLAQSERDHNIGIKELSATLGVSESYLSKIMSKLRQDGIVRAVPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L +PA QIT L+V++  E    + EC
Sbjct: 61 VNGGYELAKPARQITFLEVIQVIEGRQQLFEC 92


>gi|307718973|ref|YP_003874505.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6192]
 gi|306532698|gb|ADN02232.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6192]
          Length = 138

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG++ L++ A+ H   P  + +IAE   ISE FL  +   L  AG+V + +G
Sbjct: 1   MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RP  +IT+ ++V A E    F     A    D P+         L K +  +
Sbjct: 61  KGGGYTLRRPPHRITLREIVTAFEPYVIFPLSHEADEGPDAPIWAD------LEKHIQVW 114

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +  +   +  LV+ R  I
Sbjct: 115 MEERSLEELVGLVKRRRGI 133


>gi|256393946|ref|YP_003115510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256360172|gb|ACU73669.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 159

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 8/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + +  ++G+  L+  A   ++ P    ++AE   +   +L K LQPLV+AGI+ +  G
Sbjct: 1   MQMGEGVEWGLHCLLALAWLEEHTPVATGRLAEIFELPPEYLKKRLQPLVRAGILASSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT---EESFFVAEC---FASHKIDCPLVGS-CGLTSVLR 112
            RGG  L R  ++IT++DVV A    EE+F   E     A    +    G  CG+   +R
Sbjct: 61  ARGGYALARRPEEITLMDVVAAVEGREEAFRCTEIRKQGAGALAEADEFGEPCGIAKAMR 120

Query: 113 KALNAFFDVLTQYSI 127
           +A  A+   L   ++
Sbjct: 121 RAEMAWRRELAAQTV 135


>gi|221133857|ref|ZP_03560162.1| transcriptional regulator, BadM/Rrf2 family protein [Glaciecola sp.
           HTCC2999]
          Length = 160

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  +  I+    IS  +L ++   L K  +VE++RG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQGPVSLYDISMRQEISLSYLEQLFSKLRKQHLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL +PA++I + +V+ A  ES    +C  + K DC     C    L   L   ++
Sbjct: 61  PGGGYRLGKPANEIAVGEVIAAVNESIDATKC--NGKADCQGGEKCLTHNLWQDLSDRIS 118

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 119 KFLDNIT 125


>gi|28210751|ref|NP_781695.1| RRF2 family protein [Clostridium tetani E88]
 gi|28203189|gb|AAO35632.1| RRF2 protein family [Clostridium tetani E88]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A+ + D P  I  I+E   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVRAMIDLALNYGDIPISIKSISERQNISEYYLEQLFATLRKADLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            +GG  L R    I+I ++++  E    ++ C +    +C  + SC
Sbjct: 61  AQGGYLLSREPKDISIAEIIETLEGPVELSNCVSQG--ECENMDSC 104


>gi|323140322|ref|ZP_08075254.1| putative HTH-type transcriptional regulator IscR
           [Phascolarctobacterium sp. YIT 12067]
 gi|322415180|gb|EFY05967.1| putative HTH-type transcriptional regulator IscR
           [Phascolarctobacterium sp. YIT 12067]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI H      +  +A+   IS+ +L +I+  L KAG V++ RG
Sbjct: 1   MKISTKGRYALRLMLDLAINHTGSYIPLKTVAQRQNISDKYLEQIIHQLSKAGFVQSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL    D+ T+ ++++  E S     C    K  C    SC   GL   +++A++
Sbjct: 61  AQGGYRLAHTPDEYTVGEILRTVEGSLAPVSCLDC-KTPCDQFDSCITIGLYKKIQQAID 119

Query: 117 AFFDVLTQYSI 127
              D  T + +
Sbjct: 120 GVVDHTTLHDM 130


>gi|302389692|ref|YP_003825513.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
 gi|302200320|gb|ADL07890.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   AI + + P  +  IA+   ISE +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFDLAINYGEGPIPLKSIADRQNISEHYLEQLIMILRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSV---LRKAL 115
            +GG  L +   +IT+ DV++  E    + +C      ++C    +C +  V   +R ++
Sbjct: 61  AQGGYMLAKKPAEITVGDVLRVLEGPIGLVDCVLEQDPLECDKAENCIMRIVWEKIRDSM 120

Query: 116 NAFFDVLT 123
            A  D +T
Sbjct: 121 IAAMDSIT 128


>gi|317153664|ref|YP_004121712.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943915|gb|ADU62966.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 145

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ Y  R+L+  A+H  D P R S +A+   I+  F+ +I++PL +AG+V +VRG
Sbjct: 1   MKLSARSRYAARLLLALAMHKGDGPVRTSDLADRTGITAQFIEQIIRPLKQAGMVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF- 118
             GG  L R    IT+ ++V+  E S  +A C       C   G C   +   +A  A  
Sbjct: 61  ASGGHLLDRQPAAITLGEIVRTMEGSANIASCLDCDTA-CDRTGDCLTRTAWERASRAME 119

Query: 119 --FDVLT 123
              D +T
Sbjct: 120 RELDAIT 126


>gi|257462826|ref|ZP_05627232.1| RRF2 family protein [Fusobacterium sp. D12]
 gi|317060455|ref|ZP_07924940.1| rrf2 family protein [Fusobacterium sp. D12]
 gi|313686131|gb|EFS22966.1| rrf2 family protein [Fusobacterium sp. D12]
          Length = 138

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C  S  H+  C     CG T +  K  +
Sbjct: 61  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKET-ICGSTCIWSKLDH 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 120 ALTKILSDTTLEDFINN 136


>gi|183599755|ref|ZP_02961248.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
 gi|188022016|gb|EDU60056.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
          Length = 165

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFARLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAQVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV+N+  I
Sbjct: 120 SFLSSISLDELVKNQEVI 137


>gi|149193764|ref|ZP_01870862.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135717|gb|EDM24195.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
           mediatlanticus TB-2]
          Length = 134

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T Y ++ L+  + + D P  ++ I+E   I + FL K+LQ L + G V + +G 
Sbjct: 1   MLFTKSTAYALQALIELSKY-DKPIDVTTISEKTAIPKPFLAKLLQNLSRNGFVYSFKGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GS-CGLTSVLRKALNAF 118
            GG  L +   +I +LD+ K  E+   +    +  K DC    GS C L     K  +  
Sbjct: 60  NGGFVLAKNPKEIKLLDIFKNIEDKDTLVFYCSKSKDDCTRNRGSICELQPFFEKMEDEI 119

Query: 119 FDVLTQYSIECLVRN 133
             +L +Y++   +RN
Sbjct: 120 AIILDKYTLADFIRN 134


>gi|111017203|ref|YP_700175.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816733|gb|ABG92017.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 153

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 9/127 (7%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +     + P   +++AE   +S+ +L K LQ L +AG+V    GR GG  L
Sbjct: 6   GVEWALHCCVVLSQAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGRDGGYVL 65

Query: 67  CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120
            R  + IT+LDVV+A   TE +F   E      +  P      +CG+  V+  A  A+  
Sbjct: 66  TRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQCRSACGIAKVMAGAEQAWRA 125

Query: 121 VLTQYSI 127
            L+  +I
Sbjct: 126 SLSSVTI 132


>gi|217979263|ref|YP_002363410.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217504639|gb|ACK52048.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 144

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  YG++ L++ A+  + P   + IA    I   FL  IL  L KAGI+ + +G+ G
Sbjct: 2   LSNKGKYGLKALIHLAVF-EGPCLAADIAAHNQIPRKFLDAILLELRKAGILNSKKGKGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118
           G  L RPAD+IT   +++  +       C +       +DCP   +C +  ++    ++ 
Sbjct: 61  GYHLARPADKITAGQIIRILDGPLAPIACASRTAYRKCLDCPDEEACAVRDLMLDVRDSM 120

Query: 119 FDVLTQYSIECLVR--NRSSI 137
             +L + SI  L +  NR ++
Sbjct: 121 ALILDRTSIAALSKRGNRDNL 141


>gi|296110959|ref|YP_003621340.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832490|gb|ADG40371.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 168

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++   +  + VL+  A+  D  P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1  MKMSNAVEQSLVVLVMLALQKDELPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG +L RP  QIT+LDV +A E
Sbjct: 61 KEGGFKLARPVSQITLLDVYQAIE 84


>gi|156973367|ref|YP_001444274.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
 gi|189044753|sp|A7MU47|ISCR_VIBHB RecName: Full=HTH-type transcriptional regulator iscR
 gi|156524961|gb|ABU70047.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
          Length = 168

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL   A  I I  V+ A +ES    +C    K DC     C LT  L + L++  
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSSRI 117

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++  L+++
Sbjct: 118 SDFLNNITLGELMKD 132


>gi|117929268|ref|YP_873819.1| BadM/Rrf2 family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649731|gb|ABK53833.1| transcriptional regulator, BadM/Rrf2 family [Acidothermus
           cellulolyticus 11B]
          Length = 156

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           MH++ +TDY +R ++  A       D   +  +IA+   +   FL  IL  L +A +VE+
Sbjct: 1   MHISAKTDYAMRAMLVLAHAARERADAWVKAEEIADEQRLPRKFLEAILADLRRARLVES 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115
           +RG  GG RL +PA  I + DV++A +     AE       +    G + GL  V     
Sbjct: 61  LRGAEGGYRLAKPASAIYVADVMRAVDGPL--AEVRGLRPENVRYEGAAAGLQDVWVAVR 118

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
                VL + S+E  V NR+  K + +
Sbjct: 119 AGLRAVLERVSVED-VANRALPKPVQD 144


>gi|257465488|ref|ZP_05629859.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
 gi|257451148|gb|EEV25191.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  AIH  + P  ++ IA+   IS  +L ++   L + GIV +VRG
Sbjct: 1   MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +   +I++  ++ A  ES  V +C  S   +C    +C LT  L + L    
Sbjct: 61  PGGGYKLEKSPKEISVGMIIAAVNESVDVTKCKGSG--NCRKDSTC-LTHTLWERLEEQI 117

Query: 120 DV-LTQYSIECLVRNRS 135
            V L   S+E LV+  S
Sbjct: 118 GVFLNTVSLEDLVKENS 134


>gi|254562344|ref|YP_003069439.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269622|emb|CAX25593.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens DM4]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A+   IS   L KI Q LV+AG+VE  +GR GGVRL R A +I +  +V   E    V 
Sbjct: 17  VAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREIRLGRLVADLEGVGTVV 76

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           +C    +  CPL+G C L      A  AFF  L + ++  +V
Sbjct: 77  DC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVV 115


>gi|218887632|ref|YP_002436953.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758586|gb|ACL09485.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
          vulgaris str. 'Miyazaki F']
          Length = 152

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT RT Y  RVL+  A+H  + P   + ++    IS  FL +IL+ L +AG+  + RG
Sbjct: 1  MKLTARTRYAARVLVALAVHGTEGPLTTTALSRHTDISVQFLEQILKDLRRAGLTASARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
            GG RL  P  +I++  VV+  E    +AE
Sbjct: 61 AMGGHRLALPPTKISLGTVVRLMEGGIRIAE 91


>gi|315925094|ref|ZP_07921311.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621993|gb|EFV01957.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 145

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H D     +  IA    IS+ +L +I+  +    I+ T RG
Sbjct: 1   MKISTKGRYALRMMLDLAYHQDEGYIALKDIARRQNISKKYLEQIVSLMRGPDILATSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG RL RP    T+ ++++ TE S     C       CP    C    V +       
Sbjct: 61  YRGGYRLARPPRDYTVGEILRLTEGSLAPVACLEEGADKCPRAAGCETLPVWQGLYTRIT 120

Query: 120 DVLTQYSIECLV 131
           D L   +++ ++
Sbjct: 121 DYLDSLTLQDII 132


>gi|256545144|ref|ZP_05472510.1| iron-sulfur cluster assembly transcription factor IscR
          [Anaerococcus vaginalis ATCC 51170]
 gi|256399185|gb|EEU12796.1| iron-sulfur cluster assembly transcription factor IscR
          [Anaerococcus vaginalis ATCC 51170]
          Length = 134

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG+R + Y A + D     +S I+ A  + E +L ++++ L +  +V + RG
Sbjct: 1  MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNALKLPENYLEQLIRILKRNNLVISARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           +GG +L R + +IT+ DV++  E     +EC A
Sbjct: 61 AKGGYKLSRNSSEITVGDVLRVLEGEMTSSECVA 94


>gi|83647156|ref|YP_435591.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
           chejuensis KCTC 2396]
 gi|83635199|gb|ABC31166.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
           chejuensis KCTC 2396]
          Length = 159

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H N  P  ++ I+    IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLRRSRLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG +L RP  +  + ++++A  ES     C    K DC   G   LT  L + L+   
Sbjct: 61  PGGGYKLARPLGETAVAEIIEAVNESIDATRC--GRKGDCQ-GGEICLTHHLWQDLSERI 117

Query: 119 FDVLTQYSIECLVRNRS 135
            D L+  S+E LV +R+
Sbjct: 118 HDYLSSISLEELVASRA 134


>gi|77165125|ref|YP_343650.1| Iron-sulphur cluster assembly transcription factor IscR
           [Nitrosococcus oceani ATCC 19707]
 gi|254434832|ref|ZP_05048340.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus oceani AFC27]
 gi|76883439|gb|ABA58120.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207091165|gb|EDZ68436.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus oceani AFC27]
          Length = 166

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+    IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG RL R A +I+I+DV+ A +E+     C      +C     C LT  L + L+   
Sbjct: 61  PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRC-LTHDLWEDLSRQI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
           ++ L + ++  LV+ R  IKK+
Sbjct: 118 YEFLARITLGELVQ-RDDIKKV 138


>gi|296131265|ref|YP_003638515.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas
          flavigena DSM 20109]
 gi|296023080|gb|ADG76316.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas
          flavigena DSM 20109]
          Length = 152

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56
          M ++ + DY +R    CA     P   S  +E       I   FL +I+  L + G+V +
Sbjct: 1  MRVSAKADYAVRA---CAELASRPGGESVPSEVLAAGQDIPTSFLERIMGDLRRGGVVTS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83
          VRGR GG  L RPAD+IT+ DVV+A +
Sbjct: 58 VRGRSGGYLLARPADEITVADVVRAVD 84


>gi|87118505|ref|ZP_01074404.1| rrf2 family protein [Marinomonas sp. MED121]
 gi|86166139|gb|EAQ67405.1| rrf2 family protein [Marinomonas sp. MED121]
          Length = 165

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  ++ I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDNGPVSLADISLRQGISLSYLEQLFAKLRKQTLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  DQI +  +V A  ES     C    K DC    +C    +     +   
Sbjct: 61  PGGGYRLSRANDQIFVAQIVDAVNESVDATGCKG--KNDCQSGTTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNR 134
           D L+Q S+  LV  +
Sbjct: 119 DFLSQISLAQLVSRK 133


>gi|291559054|emb|CBL37854.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
          bacterium SSC/2]
          Length = 152

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG+R ++  A+++ D P  IS IAE   IS  +L ++L  L KAGI++++RG
Sbjct: 1  MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           +GG  L +    I+  D+++  E      +C A
Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAA 94


>gi|291551330|emb|CBL27592.1| rrf2 family protein (putative transcriptional regulator)
           [Ruminococcus torques L2-14]
          Length = 572

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T  TDY IR++ Y A  +   +  S++++   +   ++ KI + L +AGI++   G 
Sbjct: 1   MQITSTTDYAIRIVCYLAAQSQMIS-TSELSQELSVPSSYIPKITKKLKQAGIIKACEGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
           +GG ++ +  + I++ DV+  TE +  ++ C       C    +  C +  +L    N +
Sbjct: 60  KGGYQIAKQPENISLRDVISCTESTMAISRCLEKEG-GCSKNYIACCKVHQILMDLQNIY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    I  ++R
Sbjct: 119 NNRLESVKISDIIR 132


>gi|239931665|ref|ZP_04688618.1| hypothetical protein SghaA1_25822 [Streptomyces ghanaensis ATCC
           14672]
 gi|291440032|ref|ZP_06579422.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342927|gb|EFE69883.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 151

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+          +A A  +      K++  L   G++   RGR
Sbjct: 1   MRLLRSTDLALRVLMRLAVAGGSQPTTRDVAAAMDVPYTHAAKVVADLRHRGLLTARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L       ++  +V+A E    V +C   S    CPL   C L   LR+A  AFF
Sbjct: 61  GGGLTLTEKGRGASVGALVRAFEGEGDVVDCEGGSATAPCPLRSDCRLRGALRRAQEAFF 120

Query: 120 DVLTQYSIECLVRN 133
             L   ++  L  +
Sbjct: 121 ASLDPITVADLAAD 134


>gi|167765593|ref|ZP_02437657.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
 gi|317498547|ref|ZP_07956841.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712778|gb|EDS23357.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
 gi|316894240|gb|EFV16428.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 149

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG+R ++  A+++ D P  IS IAE   IS  +L ++L  L KAGI++++RG
Sbjct: 1  MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           +GG  L +    I+  D+++  E      +C A
Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAA 94


>gi|22298046|ref|NP_681293.1| hypothetical protein tlr0503 [Thermosynechococcus elongatus BP-1]
 gi|22294224|dbj|BAC08055.1| tlr0503 [Thermosynechococcus elongatus BP-1]
          Length = 145

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y +  L  M  A     P +I QIA    I + +L +++  L + G++ + R
Sbjct: 1   MELSAKSEYALLALLEMSAAYEQGEPLQIRQIAAMHNIPDRYLEQLMATLRRKGLIRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L +   QI+ILDV+   E    +    A    D   +    + SV  +A  A 
Sbjct: 61  GARGGYVLAKAPWQISILDVLNCIE---GIESKLAQKPPDNGDLERSLIRSVWLEACKAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            DVL +Y+++ L   R + +++
Sbjct: 118 NDVLKKYTLQDLCDRRQAYQQV 139


>gi|255321430|ref|ZP_05362590.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
           RM3277]
 gi|255301583|gb|EET80840.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
           RM3277]
          Length = 134

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y A   D P+ +  ++    IS+ FL KILQ L + GI+ + +G 
Sbjct: 1   MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILVSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLT---SVLRKAL 115
            GG  L +  ++I+I  ++++ E+    V EC  ++        G C +    S L+  +
Sbjct: 60  NGGFMLAQKPEEISIKRIIESAEKRKMAVFECSISADSCASSKGGMCQIWPMFSALQSKI 119

Query: 116 NAFFDVLTQYSI 127
           + F D +T  +I
Sbjct: 120 DDFLDTITLANI 131


>gi|15894952|ref|NP_348301.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024637|gb|AAK79641.1|AE007677_3 Predicted transcriptional regulator (HTH winged helix type)
          [Clostridium acetobutylicum ATCC 824]
 gi|325509089|gb|ADZ20725.1| transcriptional regulator (HTH winged helix type) [Clostridium
          acetobutylicum EA 2018]
          Length = 139

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG++ ++  AIH    P  I  I+E   ISE +L ++  PL K+G+++++RG
Sbjct: 1  MKLSTKGRYGVKAMVDLAIHYGAEPVSIKSISERQKISEAYLEQLFVPLRKSGLIKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
           +GG  L +    I I ++    E    +++C  S   D
Sbjct: 61 SQGGYVLSKDPKDIHISNIFDVLEGPIEISDCVESDSCD 99


>gi|39997666|ref|NP_953617.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39984558|gb|AAR35944.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|307635053|gb|ADI85329.2| transcriptional regulator, IscR family [Geobacter sulfurreducens
           KN400]
          Length = 145

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  ++H++  P  +  IA+   I   +L ++   L +  IVE+VRG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLHSEGKPVALRDIAQREDIPLNYLEQLFNRLRRGSIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116
             GG  L R +  I + ++V   EE      C    K  C    +C   SV   L + + 
Sbjct: 61  PGGGYLLARESSAILVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHSVWEMLGERIR 120

Query: 117 AFFDVLTQYSIECLVRN 133
            F D +T   +E LVR+
Sbjct: 121 TFLDSIT---LEDLVRD 134


>gi|311894108|dbj|BAJ26516.1| putative Rrf2 family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 145

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH++ + DY  R L+  A     P     IA +  I   FL  ++  L +AG+V + RG 
Sbjct: 1  MHISAKADYAARALVELACDTGRPLTCEAIASSQEIPFRFLKSVVGDLRRAGLVRSQRGC 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA +IT+LDVV+A +
Sbjct: 61 EGGYWLGRPAAEITLLDVVRAVD 83


>gi|283781762|ref|YP_003372517.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
          6068]
 gi|283440215|gb|ADB18657.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi
          DSM 6068]
          Length = 152

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L++   Y +R  +  A +  + P   S++A A  + E FL +IL+ LV  GI+ + RG
Sbjct: 1  MKLSRTVAYAVRATLQLAQLEAEGPVPCSRLASAGKMPERFLLQILRNLVTHGILRSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
            GG  L +PA +I++L+V++A E  +
Sbjct: 61 VDGGYSLVKPAGEISLLEVIEAIEGPY 87


>gi|310658027|ref|YP_003935748.1| transcriptional regulator [Clostridium sticklandii DSM 519]
 gi|308824805|emb|CBH20843.1| putative transcriptional regulator [Clostridium sticklandii]
          Length = 128

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  TK T+Y + ++ Y    +   N  +S +A    IS  +L KIL  LVKA ++++  G
Sbjct: 1  MKYTKATNYALHIMTYFVSQDGKENFSLSPLASHMNISPTYLSKILTQLVKANLIQSSPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L +P  +I+  DV++A E S  +  C
Sbjct: 61 VNGGYSLRKPKSEISFYDVIQAIEGSNALFTC 92


>gi|59711223|ref|YP_203999.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
           transcriptional repressor [Vibrio fischeri ES114]
 gi|59479324|gb|AAW85111.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
           transcriptional repressor [Vibrio fischeri ES114]
          Length = 168

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
             GG RL   A+QI +  V+ A +ES    +C    K  C     C LT  L + L++  
Sbjct: 61  PGGGYRLGLKAEQIAVGMVISAVDESVDATKCHG--KEGCQGGTRC-LTHTLWRDLSSRI 117

Query: 118 --FFDVLT 123
             F D +T
Sbjct: 118 STFLDGIT 125


>gi|91215754|ref|ZP_01252724.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
           torquis ATCC 700755]
 gi|91186220|gb|EAS72593.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
           torquis ATCC 700755]
          Length = 171

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y I  L+Y A  N + P  IS+IA+   I   FL  IL  L KAG++ + +G+ 
Sbjct: 28  ISKKTKYAINALVYLAKRNGEGPIVISEIAQKEHIPRKFLESILLNLKKAGVLASKKGKG 87

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116
           GG  L +  + I + DV++  E    +  C  ++K      +C    +CG+ ++  +  N
Sbjct: 88  GGYYLLQNPEDINLADVMRLVEGPIALLPC-VTYKYYERCEECKDEETCGIRNIFYEVRN 146

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
              ++L + ++  +++  S +
Sbjct: 147 KTVELLKKANLAEIIKRESHL 167


>gi|15602182|ref|NP_245254.1| hypothetical protein PM0317 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720554|gb|AAK02401.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 154

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ N  P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA++I++  V+ A  E+  V  C    + DC     C LT  L K L+   
Sbjct: 61  PGGGYQLGLPANRISVGMVINAVNENIDVTRCLG--RGDCQEGTEC-LTHSLWKELSLRI 117

Query: 120 DV-LTQYSIECLV-RNR 134
           +  L + ++E LV +NR
Sbjct: 118 EAFLNEITLEELVEKNR 134


>gi|241760101|ref|ZP_04758199.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           flavescens SK114]
 gi|241319555|gb|EER55985.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           flavescens SK114]
          Length = 148

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA+QI I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCNHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRS 135
            D L+  +++ ++  ++
Sbjct: 118 NDYLSSVTLQSIIEQKN 134


>gi|50428399|dbj|BAD30045.1| hypothetical protein [Rhodococcus opacus]
          Length = 159

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 9/127 (7%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +     + P   +++AE   +S+ +L K LQ L +AG+V    GR GG  L
Sbjct: 12  GVEWALHCCVVLSQAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGRDGGYVL 71

Query: 67  CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120
            R  + IT+LDVV+A   TE +F   E      +  P      +CG+  V+  A  A+  
Sbjct: 72  TRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQCRSACGIAKVMAGAEQAWRA 131

Query: 121 VLTQYSI 127
            L+  +I
Sbjct: 132 SLSGVTI 138


>gi|255066423|ref|ZP_05318278.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sicca ATCC 29256]
 gi|255049303|gb|EET44767.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sicca ATCC 29256]
          Length = 148

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  P  QI I  ++ A E+     +C  S K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRSS 136
            D L+  +++ ++  ++S
Sbjct: 118 NDYLSSVTLQSIIEQKNS 135


>gi|261380293|ref|ZP_05984866.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           subflava NJ9703]
 gi|284796806|gb|EFC52153.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           subflava NJ9703]
          Length = 148

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA+QI I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRS 135
            D L+  +++ ++  ++
Sbjct: 118 NDYLSSVTLQSIIEQKN 134


>gi|261377488|ref|ZP_05982061.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           cinerea ATCC 14685]
 gi|269146218|gb|EEZ72636.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           cinerea ATCC 14685]
          Length = 148

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAIKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  P  QI I  ++ A E+     +C  S K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRSS 136
            D L+  +++ ++  ++S
Sbjct: 118 NDYLSSVTLQSIIEQKNS 135


>gi|320104168|ref|YP_004179759.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
           43644]
 gi|319751450|gb|ADV63210.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
           ATCC 43644]
          Length = 164

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T+R +Y +R   Y A  + Y +   ++AEA  +   +L K+LQ L + G++ + RG  GG
Sbjct: 3   TQRVEYALRATAYLASLDGYNSTTEEVAEATKVPRAYLSKVLQELRRGGVIRSRRGVGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKID----CPL 101
           + L     ++T+L VV+A E    +  C    K      CPL
Sbjct: 63  IVLAIDPKELTLLRVVQAVEPLQRITTCPLGLKAHGARLCPL 104


>gi|310779512|ref|YP_003967845.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
 gi|309748835|gb|ADO83497.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
          Length = 140

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R  YG+R L+Y A  N   D   RI +I++   IS  +L +IL  L K  I+E  
Sbjct: 1   MKISTRIRYGLRALVYIAEQNRDFDRLVRIKEISKDQNISVQYLEQILFKLKKENIIEGK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L     +I +  + +  +    + +C  + +    +   C  + +  +  NA
Sbjct: 61  RGPNGGYKLIGDPKKINVFRLYEILDSDVKIVDCNENTENKSCVEEKCRTSCLWSRLDNA 120

Query: 118 FFDVLTQYSIECLVRNRS 135
             D+L + +++ L+ N+ 
Sbjct: 121 LSDILKETTLDDLINNKE 138


>gi|157738370|ref|YP_001491054.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           RM4018]
 gi|315636657|ref|ZP_07891890.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
 gi|157700224|gb|ABV68384.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
           RM4018]
 gi|315479083|gb|EFU69783.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
          Length = 137

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 29/135 (21%)

Query: 9   YGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           YG+  +   + H  D P +I  I+    I + +L ++L  L KA +V ++RG RGG  L 
Sbjct: 10  YGLSAMYELSKHKADTPMQIKDISANANIPQNYLEQLLSKLRKANLVNSIRGARGGYILA 69

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           +  D+I I+D++ A E+   + +  + + I                 LN FFD       
Sbjct: 70  KKPDEIKIVDILIALEDDIKIIDSKSENPI-----------------LNIFFD------- 105

Query: 128 ECLVRNRSSIKKIFN 142
                +++S+KKIF+
Sbjct: 106 ----ESKNSMKKIFD 116


>gi|82701807|ref|YP_411373.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82409872|gb|ABB73981.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H+ D P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALHSADGPVTLAGISERQKISLSYLEQLFGKLRRSKLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL +P  +++++D++ A +E     +C    K +C     C +T  L   LNA  
Sbjct: 61  PGGGYRLTKPMSEVSVVDIILAVDEPIDATQCGG--KENCHNDQRC-MTHDLWANLNARI 117

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++E LV N
Sbjct: 118 RDYLALVTLEQLVSN 132


>gi|240139920|ref|YP_002964397.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens AM1]
 gi|240009894|gb|ACS41120.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens AM1]
          Length = 150

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A+   IS   L KI Q LV+AG+VE  +GR GGVRL R A +I +  +V   E    V 
Sbjct: 17  VAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREIRLGRLVADLEGVGTVV 76

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           +C    +  CPL+G C L      A  AFF  L + ++  +V
Sbjct: 77  DC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVV 115


>gi|217976745|ref|YP_002360892.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217502121|gb|ACK49530.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 149

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 9/132 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           LTK+  YG++ +++ A +   P     ++ IA A  I + FL  IL  L  AG V + +G
Sbjct: 2   LTKKGKYGLKAMVHLAGY--LPGEATLVTDIATANQIPKKFLDTILGELRNAGFVNSKKG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L RPA +I +  +V+  +      +C ++       DC     CG+  ++ +A 
Sbjct: 60  KGGGYTLARPAHEIKVGHIVRVLDGPLAPIQCASATSYRRCDDCTDEKRCGVRLIMLEAR 119

Query: 116 NAFFDVLTQYSI 127
           NA  +VL   ++
Sbjct: 120 NAIAEVLDNRTL 131


>gi|78484962|ref|YP_390887.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363248|gb|ABB41213.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 142

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P  ++ I+E   IS  +L +I   L K+G+V + RG
Sbjct: 1   MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLKKSGLVLSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL R A++I++ +V+ A  E     +C    K +C     C    L + L   +N
Sbjct: 61  PGGGYRLSRDANEISVSEVIGAVNEDLEPRKCRG--KSNCQNGVQCLSHELWADLSGMIN 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
            F D +T   ++ ++  RSSI+ +
Sbjct: 119 EFLDGVT---LQQIIDRRSSIQSV 139


>gi|294013386|ref|YP_003546846.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
           UT26S]
 gi|292676716|dbj|BAI98234.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
           UT26S]
          Length = 154

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + ++   A H        + ++    I      K++  L  AG++E+ RG
Sbjct: 1   MRLSSFADYAVVLMSAAARHCGVAKMNATTLSAETGIPLPTAQKLVSRLSAAGLLESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL RP   IT+ DVV+A E    +  C      DC L   C +   +  A NA  
Sbjct: 61  TGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIRPHMNVANNAIR 120

Query: 120 DVLTQYSIECLVRN 133
             L   +I  L R 
Sbjct: 121 SALAGVTIASLARE 134


>gi|21674519|ref|NP_662584.1| hypothetical protein CT1702 [Chlorobium tepidum TLS]
 gi|21647711|gb|AAM72926.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 152

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L K TDY +R L+   + +D       I++   I   FL +ILQ L++ G+VE+  G  G
Sbjct: 4  LNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEGAGG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92
          GV+L +    I + DV++  +    ++EC 
Sbjct: 64 GVKLAKEPGDIGVADVIEIFQGKVQLSECM 93


>gi|295836021|ref|ZP_06822954.1| Rrf2 family protein [Streptomyces sp. SPB74]
 gi|295825840|gb|EFG64521.1| Rrf2 family protein [Streptomyces sp. SPB74]
          Length = 161

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ + DY  R L+  A   ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1  MQISAKADYAARALVELASRPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA++I++LDVV+A +
Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVD 83


>gi|228953101|ref|ZP_04115161.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806607|gb|EEM53166.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 133

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|256389588|ref|YP_003111152.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256355814|gb|ACU69311.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           MHL K TD  +R+LM  A+     H D       +AEA   +   + K++  L   G+V+
Sbjct: 1   MHLMKSTDLALRLLMRLAVVPPDTHPDELPTTRGVAEAMGAASTHMAKVVGKLQHLGLVQ 60

Query: 56  TVRGRRGGVRLCRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
             RGR GG+ L  PA ++ ++  VV+  E S  +A C       CPL  +C L S LR A
Sbjct: 61  ARRGRGGGLVLT-PAGRVASVGAVVRTFEGSGDLAACVDGED-PCPLNAACRLRSALRAA 118

Query: 115 LNAFFDVLTQYSIE 128
             AF+  L Q ++E
Sbjct: 119 QEAFYASLDQLTVE 132


>gi|160893212|ref|ZP_02074000.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
 gi|156865295|gb|EDO58726.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
          Length = 145

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y I++++  A + N  P +I  IA    IS+ +L +I+  L KA +V++VRG
Sbjct: 1   MKISTKGRYAIKLMLDLATYYNGEPVKIKDIARRQHISDKYLEQIVAILNKASLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L    +  T+  +++  E S   A+C  ++   C     C    +  K   A  
Sbjct: 61  ARGGYMLYASPENYTVRQILETVEGSLAPADCVGANAAYCENRSMCVSVLIWEKLDQAIQ 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           DVL   ++  LV  ++++
Sbjct: 121 DVLEGITLADLVDWQNNL 138


>gi|52425782|ref|YP_088919.1| hypothetical protein MS1727 [Mannheimia succiniciproducens MBEL55E]
 gi|52307834|gb|AAU38334.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 150

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI+  D P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAINAEDGPVTLSDISERQNISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +P+ QI+I  ++ A  E+  V +C    + +C     C    +  +  +   
Sbjct: 61  PGGGYQLGQPSGQISIGMIIAAVNENISVTKCLG--QGNCQGGKVCLTHHLWAELSDRIE 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L + ++E LV  + S K
Sbjct: 119 NFLNEITLEELVSKQHSQK 137


>gi|294083583|ref|YP_003550340.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663155|gb|ADE38256.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 164

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L + TDY I VL   A   D     + +AE   + +  + K+ + LV A ++ T RG 
Sbjct: 2   IRLNRMTDYAIVVLGALAHKRDETVATALLAELTGLKQPTVAKVAKNLVAADLLVTQRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA  I+++D+V+A E    V +C       C +   C + +   +   A   
Sbjct: 62  NGGYRLVRPARSISLVDIVEAMEGPIAVTDCVDGAPDPCAVTHCCFMANNWNRVNLAIRG 121

Query: 121 VLTQYSIECL 130
            L   ++E L
Sbjct: 122 ALEAVTLEDL 131


>gi|218283509|ref|ZP_03489499.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
 gi|218215777|gb|EEC89315.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
          Length = 480

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A HN   +  S++++   I+  ++ KI + L  A I+    G 
Sbjct: 1   MQLKSSTDYAIRIVCYLATHNGMIS-TSELSKQLYIATTYIPKIAKKLKDANIIVACEGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
           +GG  L + A+ I++ +++   EE+  +  C       C    V  C +  VL    N +
Sbjct: 60  KGGYTLAKRAEDISLKEIISCMEETMAINRCLERDGF-CSRNAVNHCRVHKVLLDVQNTY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    +  L+R
Sbjct: 119 NNKLENIKVSDLIR 132


>gi|30020894|ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|206971747|ref|ZP_03232696.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218231378|ref|YP_002367487.1| rrf2 family protein [Bacillus cereus B4264]
 gi|229079960|ref|ZP_04212491.1| Transcriptional regulator [Bacillus cereus Rock4-2]
 gi|229128112|ref|ZP_04257094.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|229150981|ref|ZP_04279192.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|229179055|ref|ZP_04306412.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|29896447|gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|206733132|gb|EDZ50305.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218159335|gb|ACK59327.1| rrf2 family protein [Bacillus cereus B4264]
 gi|228604423|gb|EEK61887.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|228632541|gb|EEK89159.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|228655387|gb|EEL11243.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|228703339|gb|EEL55794.1| Transcriptional regulator [Bacillus cereus Rock4-2]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|57237713|ref|YP_178961.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
 gi|86150257|ref|ZP_01068484.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152104|ref|ZP_01070316.1| rrf2 family protein (putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153564|ref|ZP_01071768.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597557|ref|ZP_01100791.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121612186|ref|YP_001000559.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926572|ref|ZP_01810254.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|153952143|ref|YP_001398128.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157415141|ref|YP_001482397.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005492|ref|ZP_02271250.1| hypothetical protein Cjejjejuni_04615 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205356370|ref|ZP_03223135.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562504|ref|YP_002344283.1| putative transcriptional regulator [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283954445|ref|ZP_06371965.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|57166517|gb|AAW35296.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
 gi|85839373|gb|EAQ56635.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840889|gb|EAQ58139.1| rrf2 family protein (putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843290|gb|EAQ60501.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249498|gb|EAQ72458.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190149|gb|EAQ94124.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360210|emb|CAL35005.1| putative transcriptional regulator [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845266|gb|EDK22360.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|152939589|gb|ABS44330.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157386105|gb|ABV52420.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345755|gb|EDZ32393.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|283794062|gb|EFC32811.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|284926118|gb|ADC28470.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307747784|gb|ADN91054.1| Rrf2 family protein (Putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315058324|gb|ADT72653.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926477|gb|EFV05859.1| Rrf2 family protein, putative [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929508|gb|EFV08702.1| Rrf2 family protein (transcriptional regulator) [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315932634|gb|EFV11565.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y +   + P  +  +A    I + FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
           +GG  L +   Q TI ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGT---CPNNKEENCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++E +++N 
Sbjct: 117 VDEFLDSITLEDIMKNN 133


>gi|296269083|ref|YP_003651715.1| BadM/Rrf2 family transcriptional regulator [Thermobispora bispora
          DSM 43833]
 gi|296091870|gb|ADG87822.1| transcriptional regulator, BadM/Rrf2 family [Thermobispora
          bispora DSM 43833]
          Length = 154

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R DY +R     A   D P  + ++A+   +   +L  IL  + +AG+V   RG 
Sbjct: 1  MRLSARVDYALRAAAELAAAGDGPTTVGELAQGQDMPPKYLENILLQMRRAGLVRGQRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA+QIT+ DV++A +
Sbjct: 61 EGGYVLARPANQITLADVIRAVD 83


>gi|325479354|gb|EGC82450.1| putative HTH-type transcriptional regulator CymR [Anaerococcus
          prevotii ACS-065-V-Col13]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG+R + Y A + D     +S+++E   +SE +L ++++ L   G++++ RG
Sbjct: 1  MKLSTRGRYGLRAMCYLASNEDRGYISVSEMSEKLNLSENYLEQLIRLLKNDGLIKSARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG ++ +  D+I++ +V++  E +  +++C +  
Sbjct: 61 PKGGYKITKDLDEISVGEVLRVLEGNITMSDCVSGE 96


>gi|262372258|ref|ZP_06065537.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter junii SH205]
 gi|262312283|gb|EEY93368.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter junii SH205]
          Length = 157

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARIASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  L+
Sbjct: 119 DYLAKITLADLI 130


>gi|288572865|ref|ZP_06391222.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568606|gb|EFC90163.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 140

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T YG+R ++  A       P  IS++A+   +SE +L ++   L K+G+V +VR
Sbjct: 1   MKLSTKTRYGLRAMIDLARGYGTGRPISISEVAKNQTLSESYLEQLFSKLRKSGLVSSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           G +GG  L R   +I   +++ + E    +A+C       C   G C    +  K  ++ 
Sbjct: 61  GAQGGYLLSRDPKEILTSEIIDSLEGPISLADCVDYGT--CERGGCCPARFLWEKVSDSI 118

Query: 118 --------FFDVLTQYSIEC 129
                    +D++ +Y  EC
Sbjct: 119 ERVTSSTTLWDIIEEYDREC 138


>gi|77361587|ref|YP_341162.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876498|emb|CAI87720.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 163

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R AD I++ DV+ A +ES     C  S  I C     C    L S L   + 
Sbjct: 61  PGGGYLLGRKADAISVGDVINAVDESVDATRCQKSD-IGCQSGMRCLTHNLWSELSARIE 119

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 120 EFLDNIT 126


>gi|251771117|gb|EES51701.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 141

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 16/123 (13%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R DYGIR ++  A+   +    ++IAE   I + FL +I+  LVK G VE+ RG +
Sbjct: 4   KLSQRVDYGIRAMVEIAVAGAHGMTGAKIAERSKIPKPFLKQIMATLVKNGFVESSRGPQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G  RL R    I +  +V+A E +  + +                 +S    AL   FD 
Sbjct: 64  GKYRLLRDPADIRLSGIVRALEGTVSLYDP----------------SSPPGPALQTLFDK 107

Query: 122 LTQ 124
           L+Q
Sbjct: 108 LSQ 110


>gi|218708628|ref|YP_002416249.1| putative transcriptional regulator [Vibrio splendidus LGP32]
 gi|254806057|sp|B7VJS5|ISCR_VIBSL RecName: Full=HTH-type transcriptional regulator iscR
 gi|218321647|emb|CAV17599.1| Predicted transcriptional regulator [Vibrio splendidus LGP32]
          Length = 173

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A  I +  V+ A +ES    +C    + DC     C LT  L + L++
Sbjct: 61  PGGGYRLGAEASDIAVGTVIAAVDESVDATKCHG--RADCQGGTRC-LTHTLWRDLSS 115


>gi|326791918|ref|YP_004309739.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium lentocellum DSM 5427]
 gi|326542682|gb|ADZ84541.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           lentocellum DSM 5427]
          Length = 149

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++   +++   +  +  IAE   +SE +L +++  L K  +V + RG
Sbjct: 1   MKLSTKGRYGLQAMVDLGVYSKEKHISLKSIAERLSMSENYLEQLMALLKKNKLVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +P ++ITI +V++A E S    +C        C L G C   SV  K  ++ 
Sbjct: 61  AQGGYALAKPPEEITIGEVLRALEGSLAPTDCTCKDGDTHCFLDGKCVTKSVWEKIRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V+   +++ L+ +   I +
Sbjct: 121 DRVVDNITLDQLMADYEKINE 141


>gi|296133417|ref|YP_003640664.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
 gi|296031995|gb|ADG82763.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR]
          Length = 149

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ +   A H  + P  +  IAE   +SE +L +++  L KAG+V++VRG
Sbjct: 1   MKVSTKGHYGVQAMFDLAQHFGEGPVSLKSIAERQGLSEPYLEQLIAVLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R    I + D+++  E      EC +    + C     C   SV  K   + 
Sbjct: 61  AQGGYILAREPRDIKVGDIIRVLEGPIAPVECVSQDDPEHCLKFDFCVTKSVWEKVKKSI 120

Query: 119 FDVLTQYSIECLVRN 133
            +VL   ++  ++++
Sbjct: 121 EEVLDSITLADMLKD 135


>gi|261345349|ref|ZP_05972993.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rustigianii DSM 4541]
 gi|282566392|gb|EFB71927.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rustigianii DSM 4541]
          Length = 165

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +DQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRGSDQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNR 134
             L+  S++ LV+N+
Sbjct: 120 SFLSSISLDELVKNQ 134


>gi|114319885|ref|YP_741568.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
          ehrlichii MLHE-1]
 gi|114226279|gb|ABI56078.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
          ehrlichii MLHE-1]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          + + + TDYGI +L   A   +      ++A+   + +  + KIL+ L +AGI+ + RG 
Sbjct: 2  VRINRETDYGIGILTAMARAPEQRFSTVRLADQQGLPQPMVAKILKNLARAGILVSYRGA 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +GG  L RPA QI++ +++ A E      EC
Sbjct: 62 KGGYGLARPARQISVAEIITALEGPIAFTEC 92


>gi|308050471|ref|YP_003914037.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
           DSM 9799]
 gi|307632661|gb|ADN76963.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
           DSM 9799]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAILDVALHSPEGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA +I +  VV A +ES     C    K +C     C   S+     +   
Sbjct: 61  PGGGYLLGRPAAEIAVGMVVHAVDESVDATRCHG--KSNCQGGARCLTHSLWGDLSDRIS 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+  L+ NR
Sbjct: 119 SFLNGISLADLMANR 133


>gi|307294771|ref|ZP_07574613.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306879245|gb|EFN10463.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 165

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%)

Query: 43  KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102
           K++  L  AG++E+ RG  GGVRL RP   IT+ DVV+A E    +  C      DC L 
Sbjct: 55  KLVSRLSAAGLLESSRGTGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLE 114

Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
             C +   +  A NA    L   +I  L R
Sbjct: 115 QECRIRPHMNVANNAIRSALAGVTIASLAR 144


>gi|297588298|ref|ZP_06946941.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
 gi|297573671|gb|EFH92392.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
          Length = 135

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCP 100
            +GG  L +   +I++ ++++  EE F V EC A     S +  CP
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSAVPGLCSREDTCP 106


>gi|228921441|ref|ZP_04084764.1| Transcriptional regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838214|gb|EEM83532.1| Transcriptional regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQHVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|118497442|ref|YP_898492.1| transcriptional regulator [Francisella tularensis subsp. novicida
           U112]
 gi|195536133|ref|ZP_03079140.1| transcriptional regulator family protein [Francisella tularensis
           subsp. novicida FTE]
 gi|208779236|ref|ZP_03246582.1| transcriptional regulator family protein [Francisella novicida FTG]
 gi|254372803|ref|ZP_04988292.1| transcriptional regulator [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374263|ref|ZP_04989745.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|118423348|gb|ABK89738.1| transcriptional regulator [Francisella novicida U112]
 gi|151570530|gb|EDN36184.1| transcriptional regulator [Francisella novicida GA99-3549]
 gi|151571983|gb|EDN37637.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|194372610|gb|EDX27321.1| transcriptional regulator family protein [Francisella tularensis
           subsp. novicida FTE]
 gi|208745036|gb|EDZ91334.1| transcriptional regulator family protein [Francisella novicida FTG]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    
Sbjct: 62  EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|172058089|ref|YP_001814549.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990610|gb|ACB61532.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 136

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A   +  P  + +IA+   +SE +L +++ PL   G+V++VRG
Sbjct: 2   MKISTKGRYGLTIMIALAKGGEAKPLSLKKIAQMYDLSEHYLEQLIAPLRNGGLVKSVRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A++IT  D+++  E    V E       +C  V    L   ++ A++   
Sbjct: 62  AYGGYKLGRSAEEITAGDIIRLLEGPLVVVEGD-----NCDEVTKRKLWDKIQSAVDQVL 116

Query: 120 DVLT 123
           D  T
Sbjct: 117 DTTT 120


>gi|226953086|ref|ZP_03823550.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|294650675|ref|ZP_06728029.1| HTH-type transcriptional regulator IscR family protein
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226836178|gb|EEH68561.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|292823466|gb|EFF82315.1| HTH-type transcriptional regulator IscR family protein
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 157

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +IT+L++++A  E+     C   HK +C     C    + +   +   
Sbjct: 61  ANGGYHLARNASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQDLSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  L+
Sbjct: 119 DYLAKITLADLI 130


>gi|89072688|ref|ZP_01159253.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
 gi|89051508|gb|EAR56962.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 13  MKLTSKGRYAVTAMLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG RL   A  I +  V+ A +ES    +C    K DC     C LT  L   L+
Sbjct: 73  PGGGYRLGEEASDIAVGMVIAAVDESVDATKCHG--KGDCQGGARC-LTHTLWHDLS 126


>gi|291548060|emb|CBL21168.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
          SR1/5]
          Length = 142

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG++ L+   ++++     +  IA    IS  +L +++  L KAG+V++VRG
Sbjct: 1  MKLSTRAKYGLKALIDLGLYSEKEAVSLQSIAGRQNISVSYLEQLMALLKKAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L RPA++I++ D+++  E     A C
Sbjct: 61 AAGGYFLGRPAEEISVGDILRVLEGGLEAATC 92


>gi|83310153|ref|YP_420417.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944994|dbj|BAE49858.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 149

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ +++ A H    P  I+ +AEA  I + FL  IL  +   G++ + +G+ 
Sbjct: 2   LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA++I + D+V+  +       C +        DCP   +C + +V++   +A
Sbjct: 62  GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCPDEAACTVRAVMQDVRDA 121

Query: 118 FFDVLTQYSI 127
              +    S+
Sbjct: 122 IAAIPDNTSL 131


>gi|28897369|ref|NP_796974.1| hypothetical protein VP0595 [Vibrio parahaemolyticus RIMD 2210633]
 gi|81839883|sp|Q87S29|ISCR_VIBPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|28805581|dbj|BAC58858.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|328472608|gb|EGF43471.1| hypothetical protein VP10329_12296 [Vibrio parahaemolyticus 10329]
          Length = 168

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A  I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 115


>gi|153838057|ref|ZP_01990724.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
 gi|308094348|ref|ZP_05888684.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AN-5034]
 gi|308095615|ref|ZP_05907096.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           Peru-466]
 gi|308125639|ref|ZP_05776393.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           K5030]
 gi|149748524|gb|EDM59383.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
 gi|308086941|gb|EFO36636.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           Peru-466]
 gi|308092986|gb|EFO42681.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AN-5034]
 gi|308113048|gb|EFO50588.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           K5030]
          Length = 174

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 7   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A  I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 67  PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 121


>gi|331092088|ref|ZP_08340919.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402289|gb|EGG81860.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 132

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+  TDYGIR+++Y  I N+     + ++E   I + ++ K+ + L  A IV   +G 
Sbjct: 1  MQLSVTTDYGIRIVLYL-IKNNEVTSSAILSEKLDIPKTYVLKVTKKLEAANIVACYQGV 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
           GGV L    ++I++ DVV ATE +  + +C  +
Sbjct: 60 NGGVNLLPRPEEISLWDVVIATETTTAINKCLDT 93


>gi|229110219|ref|ZP_04239793.1| Transcriptional regulator [Bacillus cereus Rock1-15]
 gi|228673205|gb|EEL28475.1| Transcriptional regulator [Bacillus cereus Rock1-15]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTILFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|225076501|ref|ZP_03719700.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
           NRL30031/H210]
 gi|224952180|gb|EEG33389.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
           NRL30031/H210]
          Length = 148

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA+QI I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCNHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRS 135
            D L+  +++ ++  ++
Sbjct: 118 NDYLSGVTLQSIIEQKN 134


>gi|300172524|ref|YP_003771689.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
 gi|299886902|emb|CBL90870.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
          Length = 168

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++   +  + VL+  A+  +D P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1  MKMSHAVEQSLVVLVMLALQKDDLPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG RL RP  +IT+LDV +A E
Sbjct: 61 KEGGFRLARPISKITLLDVYQAIE 84


>gi|91225151|ref|ZP_01260373.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
 gi|91190094|gb|EAS76365.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
          Length = 168

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A  I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 115


>gi|56551012|ref|YP_161851.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761404|ref|ZP_04759492.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|56542586|gb|AAV88740.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374311|gb|EER63808.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 145

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 7/99 (7%)

Query: 10  GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           G  VL   AIH +         IAE   I   +L KIL  L +AG++   RG+ GG+RL 
Sbjct: 9   GYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNGGLRLN 68

Query: 68  RPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101
           RP + I++L++VKA +   +   CF      S++  CP+
Sbjct: 69  RPPETISLLEIVKAIDGKDWGCGCFLGLPGCSNEHPCPM 107


>gi|93006479|ref|YP_580916.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
          cryohalolentis K5]
 gi|92394157|gb|ABE75432.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
          cryohalolentis K5]
          Length = 170

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R  Y +  L+  A+          +S IA+   IS  +L ++   L K G+V ++
Sbjct: 1  MRLTTRGRYAVTALLDLALQTSQQESAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          RG  GG  L +P DQI ++ ++ A +ES    +C
Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC 94


>gi|261364552|ref|ZP_05977435.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           mucosa ATCC 25996]
 gi|288567120|gb|EFC88680.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           mucosa ATCC 25996]
          Length = 148

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  P  QI I  ++ A E+     +C  S K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCYHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRSS 136
            D L+  +++ ++  ++S
Sbjct: 118 NDYLSSVTLQSIIEQKNS 135


>gi|326386610|ref|ZP_08208232.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208925|gb|EGD59720.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 164

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY + V M  A       R+S  Q+AE   +    + K++  L  AG++ +VR
Sbjct: 1   MRLSSMADYAV-VAMSAAARRCGHARVSAQQLAEDTGLPVPTVQKLVSKLSAAGLLRSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           G  GG+ L RPA  I++ D+V+A E    +A+C  + + DC +   C
Sbjct: 60  GAGGGLTLARPAAAISLADIVEAVEGPIAMAQCSDNSRHDCTIGQGC 106


>gi|320334616|ref|YP_004171327.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755905|gb|ADV67662.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 156

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  +A    +S+ +L +I   L +AG + +VRG 
Sbjct: 1   MWISTKAQYGLRALVEIGRRPGEAVPLKDVAANQGLSQHYLEQIASNLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L R  D I   DVV A E S     C       C   G C    + ++   A   
Sbjct: 61  HGGYKLTRTPDLINTWDVVVAMEGSLAPVACVEEGH-SCEREGVCATQDLWQRVEGAVRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   ++  L+R    I+
Sbjct: 120 VLGGTTLADLIRENERIE 137


>gi|315918520|ref|ZP_07914760.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059669|ref|ZP_07924154.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
 gi|313685345|gb|EFS22180.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
 gi|313692395|gb|EFS29230.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 148

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 11  MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 70

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C  S  H+  C     CG T +  K   
Sbjct: 71  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-DSICGSTCIWSKLDY 129

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 130 ALTKILSDTTLEDFINN 146


>gi|223928089|gb|ACN23804.1| iron-sulfur cluster regulator [Clostridium sp. enrichment culture
           clone 7-14]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H       +  +A+   ISE +L  I++ LVKA ++  +RG
Sbjct: 11  MLISTKGRYALRVMVDLAEHRTEGYIPLKAVAQRQDISEKYLESIIKLLVKAKLLNGLRG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +  +  T+  +++ TEES     C       CP +  C   S+ +       
Sbjct: 71  KGGGYQLTKAPELYTVGSILRLTEESLAPVSCLEPGAASCPRMAECRTLSLWQGLDRVIS 130

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   ++  LV++ ++
Sbjct: 131 DYLDNITVADLVKSTAA 147


>gi|167745701|ref|ZP_02417828.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
 gi|317472704|ref|ZP_07932019.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|167655013|gb|EDR99142.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
 gi|316899881|gb|EFV21880.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 165

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A+  +  P  +S I+E   IS  +L ++L  L KAG+V+++RG
Sbjct: 14  MKLSTKGRYGLRAIVDIAVFGEKEPAAVSAISERQDISIRYLEQLLSKLKKAGLVKSIRG 73

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            +GG  L   A+ I++ DV++A E      +C
Sbjct: 74  AQGGYVLAGNAEDISVGDVLRALEGDLTPVDC 105


>gi|30262741|ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47528060|ref|YP_019409.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185589|ref|YP_028841.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|118478131|ref|YP_895282.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|165868776|ref|ZP_02213436.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167632402|ref|ZP_02390729.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167637771|ref|ZP_02396050.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170685225|ref|ZP_02876449.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170704801|ref|ZP_02895267.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177649735|ref|ZP_02932737.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190565557|ref|ZP_03018477.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196043481|ref|ZP_03110719.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225864745|ref|YP_002750123.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227814419|ref|YP_002814428.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229604122|ref|YP_002867050.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254685333|ref|ZP_05149193.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722741|ref|ZP_05184529.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254737789|ref|ZP_05195492.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743037|ref|ZP_05200722.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254752103|ref|ZP_05204140.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254760624|ref|ZP_05212648.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|30257373|gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47503208|gb|AAT31884.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179516|gb|AAT54892.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|118417356|gb|ABK85775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|164715502|gb|EDR21019.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167514320|gb|EDR89687.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167532700|gb|EDR95336.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170130602|gb|EDS99463.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170670585|gb|EDT21324.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172084809|gb|EDT69867.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190563584|gb|EDV17549.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196025790|gb|EDX64459.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225787545|gb|ACO27762.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227004844|gb|ACP14587.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229268530|gb|ACQ50167.1| rrf2 family protein [Bacillus anthracis str. A0248]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L    + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGC 100


>gi|255327681|ref|ZP_05368747.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
           25296]
 gi|255295355|gb|EET74706.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
           25296]
          Length = 156

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RVLM   A+         +IAE        + K +  LV  G +++ RG
Sbjct: 1   MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L       T+  V++ATE    + EC       CPL   C L +VL KA  AF+
Sbjct: 61  RSGGVMLSDAGRSATVGTVLRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             +    I  L      +  +F
Sbjct: 120 ASVDSVIISELTAGARPVGPVF 141


>gi|153835382|ref|ZP_01988049.1| Rrf2 family protein [Vibrio harveyi HY01]
 gi|308126079|ref|ZP_05907695.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AQ4037]
 gi|148868104|gb|EDL67270.1| Rrf2 family protein [Vibrio harveyi HY01]
 gi|308106690|gb|EFO44230.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AQ4037]
          Length = 174

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 7   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   A  I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 67  PGGGYRLGADAHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 121


>gi|221319934|ref|ZP_03601228.1| hypothetical protein BsubsJ_14863 [Bacillus subtilis subsp.
          subtilis str. JH642]
          Length = 111

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 2  LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG  L    D IT  D+++  E    + +C+
Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKCW 94


>gi|326776682|ref|ZP_08235947.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
           griseus XylebKG-1]
 gi|326657015|gb|EGE41861.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
           griseus XylebKG-1]
          Length = 148

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ +   P    ++A    +      K++  L   G+++  RG
Sbjct: 1   MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L        I  +V+  E    V EC       CPL  +C L   LR A  AF+
Sbjct: 61  RGGGLTLTPAGRSTPIGPLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 118

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 119 AALDPITVTDLV 130


>gi|288917460|ref|ZP_06411826.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
 gi|288351163|gb|EFC85374.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
          Length = 136

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVR 58
          M+++ R +Y IR ++  A+   +P+R++  A A    IS  +L  IL  L +AG++   R
Sbjct: 1  MYISARAEYAIRAMLALAVA--HPDRVAAPALAASEEISLAYLQAILLDLRRAGLLFNRR 58

Query: 59 GRRGGVRLCRPADQITILDVVKAT 82
          G  GG  L RP D IT+ D+++AT
Sbjct: 59 GVDGGYSLARPTDSITVGDILRAT 82


>gi|139438966|ref|ZP_01772426.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
           25986]
 gi|133775677|gb|EBA39497.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
           25986]
          Length = 142

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +RV++  A H     RI   +IA    ISE +L  IL  LV+A ++  +R
Sbjct: 1   MLVSTKGRYALRVMVDLAEHQ-AAGRIPLKEIAARQGISEKYLENILATLVRANMLSGMR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115
           G+ GG  L RP +Q T+ ++++ TE S     C       C     C    V   L K +
Sbjct: 60  GKGGGYVLTRPPEQYTVGEILRLTEGSLAPVACLDGDCKGCSRSDECPTLDVWKNLDKLI 119

Query: 116 NAFFDVLT 123
           N + D +T
Sbjct: 120 NDYLDGVT 127


>gi|119774429|ref|YP_927169.1| Rrf2 family protein [Shewanella amazonensis SB2B]
 gi|119766929|gb|ABL99499.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
           SB2B]
          Length = 153

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSAQGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   AD I++  VV A +ES     C  +   +C     C   S+         
Sbjct: 61  PGGGYRLGLEADDISVGMVVHAVDESVDATRCQGAG--NCQSGSRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L++ R
Sbjct: 119 DFLNGISLAALMQKR 133


>gi|212634528|ref|YP_002311053.1| hypothetical protein swp_1693 [Shewanella piezotolerans WP3]
 gi|212556012|gb|ACJ28466.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 153

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTDGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A +I++  VV+A +ES     C    + +C     C   S+     +   
Sbjct: 61  PGGGYRLGTDACEISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSSQIS 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L+R R
Sbjct: 119 DFLNGISLAGLMRKR 133


>gi|319638128|ref|ZP_07992891.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
 gi|317400401|gb|EFV81059.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
          Length = 148

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA+QI I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRS 135
            D L+  +++ ++  ++
Sbjct: 118 NDYLSGVTLQSIIEQKN 134


>gi|182436058|ref|YP_001823777.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464574|dbj|BAG19094.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 156

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ +   P    ++A    +      K++  L   G+++  RG
Sbjct: 9   MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L        I  +V+  E    V EC       CPL  +C L   LR A  AF+
Sbjct: 69  RGGGLTLTPAGRSTPIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 126

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 127 AALDPITVTDLV 138


>gi|325284485|ref|YP_004257024.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
 gi|324316659|gb|ADY27770.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
          Length = 156

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
           +A+   + + +L K L+ LV+AG++    G RGG RL RPA++IT  +V++A E  +SFF
Sbjct: 31  MAQHHGLPDDYLAKYLKQLVRAGVLMASTGPRGGYRLARPAERITAWEVIEAIEGGQSFF 90

Query: 88  ----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
               + +C             C +  ++  A   + D L+Q ++  LV+ 
Sbjct: 91  HCQEIRQCGTGAARPAECTEPCAIHQMMHSAFLTWKDQLSQTTVADLVQQ 140


>gi|253581432|ref|ZP_04858657.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836502|gb|EES65037.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 140

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DY I++++Y + +         +I+EA  +S  F  KIL+ L K  +VE+ RG
Sbjct: 5   MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEKMSMKFALKILRRLCKVKLVESFRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLT---SVLR 112
            +GG +L + AD I++  V++  +   F+        ++ K++   V S   +    V R
Sbjct: 65  IKGGYKLKKSADDISLRSVIEVIQGDLFINTSLKNINSAKKVETDPVNSLLYSIQEDVKR 124

Query: 113 KALNAFFDVLTQYS 126
           K  N  F  L   S
Sbjct: 125 KLSNTSFKDLRDAS 138


>gi|325678776|ref|ZP_08158374.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
           albus 8]
 gi|324109280|gb|EGC03498.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
           albus 8]
          Length = 144

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A H+ D    I  IAE   IS+ +L +I+  L +AG V ++RG
Sbjct: 1   MKISTKGRYALRLMTDLAEHHQDGYVPIKVIAERQNISDKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P +  T+  +++ TE S     C  + +  C    +C    +  K   A  
Sbjct: 61  AGGGYMLAYPPENYTVGMILRLTEGSLAPVACLETDENLCERAENCPTLFIWEKLYAAIN 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DV+   ++  +V  +++    +N
Sbjct: 121 DVVDNITVADIVARKTNAGDFYN 143


>gi|228959004|ref|ZP_04120705.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229046468|ref|ZP_04192123.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|229145347|ref|ZP_04273736.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|229190868|ref|ZP_04317859.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|296503312|ref|YP_003665012.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|228592536|gb|EEK50364.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228638186|gb|EEK94627.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|228724830|gb|EEL76132.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|228800665|gb|EEM47581.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|296324364|gb|ADH07292.1| RRF2 family protein [Bacillus thuringiensis BMB171]
          Length = 133

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTILFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|296132372|ref|YP_003639619.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
 gi|296030950|gb|ADG81718.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens
          JR]
          Length = 134

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          MH+ + TDY  R +++ A         +Q IA    I   FL KI+  L+KAGIV++ RG
Sbjct: 1  MHINQATDYAFRAVLFLAQQPKGKVVEAQVIARKEVIPMRFLLKIMPSLIKAGIVKSQRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG  L +    I+ LDVV A E    +  C 
Sbjct: 61 VGGGYYLAKDPRDISFLDVVTAIEGPVAINRCL 93


>gi|291297814|ref|YP_003509092.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567034|gb|ADD39999.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 158

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T   ++ +   +  +   D P   +++AE       +L K LQ L +AGIV +  G+
Sbjct: 1   MKMTSGVEWALHACVTLSQAAD-PVPAARLAELHGTPPAYLAKQLQSLARAGIVTSTAGQ 59

Query: 61  RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVG---SCGLTSVLRKA 114
            GG  L RPA ++T+L+VV+A   TE ++   E      +  P      SC +   + +A
Sbjct: 60  VGGYTLTRPATEVTVLEVVQAVDGTEPAYRCTEIRQRGPLAVPAEKCERSCAIARAMAEA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A+   L++ +I  L R 
Sbjct: 120 QEAWSRALSRITIADLARG 138


>gi|229814919|ref|ZP_04445257.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
           13280]
 gi|229809406|gb|EEP45170.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
           13280]
          Length = 146

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H +D    + +IA    ISE +L  IL  LV+ G++  +RG
Sbjct: 1   MLVSTKGRYALRVMIDLAEHRSDGRTPLRKIAARQGISEKYLENILTTLVRHGLLSGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L R  +  TI +V++ TE S     C       C     C    V R+  +   
Sbjct: 61  KGGGYCLTREPEDFTIGEVLRLTEGSLCPVACLEHGHDGCDRAEHCRTVRVWRELDSLIE 120

Query: 120 DVLTQYSIECLVRNRS 135
           + L   ++  LVR+ S
Sbjct: 121 NYLNGVTLADLVRDES 136


>gi|294782591|ref|ZP_06747917.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481232|gb|EFG29007.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 141

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L    +QI +  + K  ++   V +C   A  K       +CG T +  +  N
Sbjct: 61  GPTGGYKLTLKPNQINLYTIYKILDDEERVIDCNENAEGKAHNCNEEACGETCIWSRLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S+E  ++N   I
Sbjct: 121 AMTKILSETSLEDFIKNGKKI 141


>gi|238022335|ref|ZP_04602761.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
 gi|237866949|gb|EEP67991.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
          Length = 148

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT +  + +  ++  A+ N   N  +++ I+E   IS  +L ++   L +AG+VE+VR
Sbjct: 1   MRLTTKGRFAVTAMVDLAM-NAQNNAVKLNAISERQKISLSYLEQLFSKLRRAGLVESVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG  L +PA QI I  ++ A E+     +C  S K DC     C +T  L ++LN
Sbjct: 60  GPGGGYVLGKPAGQINIAQIITAAEDRLDATQC--SGKADCHGGAPC-ITHNLWESLN 114


>gi|149375017|ref|ZP_01892790.1| rrf2 family protein [Marinobacter algicola DG893]
 gi|149360906|gb|EDM49357.1| rrf2 family protein [Marinobacter algicola DG893]
          Length = 165

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ I+    IS  +L ++   L +  +V ++RG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRHKLVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD + I +VV A  ES     C   +K DC     C    +     +   
Sbjct: 61  PGGGYRLSREADSVFIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVRNR 134
             L+  S+  L+R R
Sbjct: 119 QFLSDISLGDLMRKR 133


>gi|225018166|ref|ZP_03707358.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
          DSM 5476]
 gi|224949163|gb|EEG30372.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
          DSM 5476]
          Length = 132

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M++T  +DY +R++ + A   +  +    IAE   ++  F  KIL+ LV AG+V++ +G 
Sbjct: 1  MYITLESDYAVRIMSFLAKRREKLD-AKTIAENTGVTLRFALKILRKLVAAGVVQSFKGI 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
          +GG  + R   +IT+L++++  E  +  + C   
Sbjct: 60 QGGYLIARDPSEITLLEIIETVEGRYCFSRCLGE 93


>gi|295102114|emb|CBK99659.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii L2-6]
          Length = 149

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQQLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL +     T  ++++A E S     C  S   +CP+   C      + L   +N
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSDQCFTLPFWAGLDDVIN 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
            + D +T   +E L ++  ++K+
Sbjct: 121 QYIDSVT---LEQLAQSLPAVKE 140


>gi|117926344|ref|YP_866961.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610100|gb|ABK45555.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
           MC-1]
          Length = 157

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A H N  P  +++I+    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTAMLDLAQHANRGPVTLAEISNRQQISLSYLEQLFAKLRRGGLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A+QI++  +++A +E      C       C     C    +  +     +
Sbjct: 61  PGGGYQLDRGAEQISVAAIIRAVDEPIHATSCKDKGTEGCRRDTRCITHDLWARLGEHIY 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L   S+  L+R+ S++  +  A
Sbjct: 121 HYLESVSLAQLMRDGSALAMLGEA 144


>gi|257453134|ref|ZP_05618433.1| RRF2 family protein [Fusobacterium sp. 3_1_5R]
 gi|257467390|ref|ZP_05631701.1| RRF2 family protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 138

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C  S  H+  C     CG T +  K   
Sbjct: 61  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-DSICGSTCIWSKLDY 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 120 ALTKILSDTTLEDFINN 136


>gi|332702697|ref|ZP_08422785.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552846|gb|EGJ49890.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 148

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YG R+++  A++ N    R+S +A    +S  +L K+++ L KAG V + RG
Sbjct: 1   MRLSTRSRYGARMVLDMALYGNAGLVRLSDLAVRLDVSVKYLEKLVRELQKAGYVYSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I++ +VV+  E    +  C    +I C  V  C +  V   A  A F
Sbjct: 61  PTGGHGLARDVAEISVGEVVRLLEGDHALTMCAQEDQI-CRHVDDCIMRKVWTDASEAMF 119

Query: 120 DVLTQYSIECLVRN 133
             L   +   LVR 
Sbjct: 120 AALDAVTFADLVRE 133


>gi|304437228|ref|ZP_07397188.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369720|gb|EFM23385.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 147

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+ +      +  IA    ISE +L +++ PL +AG+VE+VRG
Sbjct: 1   MKLSTKGRYSVTALYELALRYGKGVIPLHAIAATQGISEHYLEQLMVPLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L  P ++ITI  ++ A E    + +C      +    C   G+C    +  +  
Sbjct: 61  AQGGYTLALPPEKITIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 120

Query: 116 NAFFDVLTQYSIECLVR 132
           ++   VL   ++  LV+
Sbjct: 121 DSINSVLNNIALSDLVQ 137


>gi|126668574|ref|ZP_01739528.1| rrf2 family protein [Marinobacter sp. ELB17]
 gi|126626979|gb|EAZ97622.1| rrf2 family protein [Marinobacter sp. ELB17]
          Length = 165

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D+ P  ++ I+    IS  +L ++   L +  +V ++RG
Sbjct: 1   MKLTTKGRYAVTAMLDLALHGDHGPVTLADISARQEISLSYLEQLFSRLRRRHLVASIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL R A+ I I +VV+A  ES     C   +K DC     C    L S L + ++
Sbjct: 61  PGGGYRLSRGANAIFISEVVEAVSESLDTTRC--GNKGDCQSGEKCLTHHLWSDLSEQIH 118

Query: 117 AFFDVLT 123
            F D ++
Sbjct: 119 QFLDNIS 125


>gi|88856365|ref|ZP_01131024.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
 gi|88814449|gb|EAR24312.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
          Length = 141

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           L + G++E VRGR GGVR+     Q T+  V++  +    +A+C     + CPL+  CGL
Sbjct: 41  LRELGMIEAVRGRSGGVRISDAGRQATVGWVLRQLDTRTDLADCETPDGL-CPLIDGCGL 99

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSS 136
              LR A  AF+  L    I  L + RS 
Sbjct: 100 RGALRLAREAFYAALDDVVISSLRQPRSD 128


>gi|95930242|ref|ZP_01312980.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133705|gb|EAT15366.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
          Length = 150

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +R ++  ++   + P  I +I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLSTKAQYAVRAMVRLSLEQRETPVSIREISNHENISLTYLEQLFAKLRRGELVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPADQI +  ++ + EE+     C      +C     C   +V ++      
Sbjct: 61  PGGGYVLARPADQIKVDQIIDSVEETLIPVSCMDEFG-NCACSDQCVTHTVWQELGERIR 119

Query: 120 DVLTQYSIECLVRN 133
             L+  SIE L R 
Sbjct: 120 GFLSSVSIEDLTRE 133


>gi|158336452|ref|YP_001517626.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
          MBIC11017]
 gi|158306693|gb|ABW28310.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
          MBIC11017]
          Length = 147

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++  ++ P  ++ I++   +   +L K+L  L +AG+V +VRG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPNFGPASVNVISQRQSLPAPYLEKLLIELRQAGLVRSVRG 60

Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86
           +GG +L RP  QI+   IL+ V  T E F
Sbjct: 61 SKGGYQLARPPVQISLGHILEAVGETVEPF 90


>gi|22297713|ref|NP_680960.1| hypothetical protein tll0169 [Thermosynechococcus elongatus BP-1]
 gi|22293890|dbj|BAC07722.1| tll0169 [Thermosynechococcus elongatus BP-1]
          Length = 148

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y I+ L+  ++  +Y P  +  IAE   I   +L K+L  L +AG+V ++RG
Sbjct: 1  MTLTTRGHYSIKALLDLSLLPNYGPASVRAIAERQKIPAPYLEKLLIELRRAGLVRSLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG +L RP   I++ D++ A  ES
Sbjct: 61 VYGGYQLARPPATISLRDILTAVGES 86


>gi|189346037|ref|YP_001942566.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola
          DSM 245]
 gi|189340184|gb|ACD89587.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
          DSM 245]
          Length = 143

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          + ++++ +YG+  + Y A       R+    ++AE+   S+ FL K +Q + KAGI E+V
Sbjct: 2  LQVSRKFEYGLHAVAYLATKGS--GRVVTVKEMAESIGFSQEFLSKAMQSMKKAGITESV 59

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +G +GG RL R    ITI D+  A E    +  C
Sbjct: 60 QGVKGGYRLARHPSVITIADIGIAIEGKPHLTRC 93


>gi|325102989|ref|YP_004272643.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324971837|gb|ADY50821.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 144

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGIR L+    H D  P  IS IAE   I + FL +IL  L  AG + + +G  
Sbjct: 2   LSKKTKYGIRALIALGEHYDKEPVNISFIAETEKIPKKFLEQILLELRNAGFLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I ++ V++ T        C    F     +C    +CG+    R   +A
Sbjct: 62  GGYSLLKNPKDINLVQVMRITGGPIAQLPCVSLNFYQRCEECKDEENCGIRDTFRDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              +L++ +I  L+     + +
Sbjct: 122 TLKILSETTIADLIAKEKGLPR 143


>gi|167629932|ref|YP_001680431.1| transcriptional regulator, rrf2 family [Heliobacterium
           modesticaldum Ice1]
 gi|167592672|gb|ABZ84420.1| transcriptional regulator, rrf2 family [Heliobacterium
           modesticaldum Ice1]
          Length = 150

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+ +   P  +  +AE   ISE +L +I+  L KAG+V ++RG
Sbjct: 1   MKLSTKGQYGVRAMFELAMQYGQGPVSLKLVAERQDISEHYLEQIIAGLRKAGLVNSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R   +IT+ D+++  E      +C      + C     C    V  K  ++ 
Sbjct: 61  AQGGYVLARDPAEITVGDIIRVLEGPVAPVDCVNDDIPERCTRASQCISKRVWAKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+   ++  + ++   +K
Sbjct: 121 EQVIDSITLADMCKDAEKMK 140


>gi|300934634|ref|ZP_07149890.1| Rrf2 family transcriptional regulator [Corynebacterium resistens
           DSM 45100]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT   D G+R +M   I  D P      I+ +A+A   S+  L +++  LV+  +V +
Sbjct: 1   MRLTTFADLGLRSMM---ILGDLPEGERLTIADLAKATNASDNHLARVIAKLVEMKLVVS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115
           VRGR GG  L   A   ++  +++  E S  V +C  +    CPL    C L   L  A 
Sbjct: 58  VRGRNGGAYLSDTARGASVGKILRQIEGSSEVVDCAGTRP--CPLAARDCALRHRLADAQ 115

Query: 116 NAFFDVLTQYSIECLV 131
            AFF  L   +I  L+
Sbjct: 116 EAFFATLDDDTIGDLI 131


>gi|332291390|ref|YP_004429999.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169476|gb|AEE18731.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 141

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+++T YGI+ L Y A     D   +I  IAE+  IS+ FL  I+  L KAG V + +G+
Sbjct: 2   LSRKTKYGIKALTYIAREQREDALVQIGTIAESENISQKFLESIMLTLKKAGFVSSRKGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALN 116
            GG +L R    I +++V++  E    +  C + +      DC    +C + S++ +  +
Sbjct: 62  GGGYQLRREPKDIKMVEVMRVLEGPVAMLPCVSLNYYERCADCKDEDACAVHSLMIQIRD 121

Query: 117 AFFDVLTQYSIECLVRNRSS 136
               VL + ++  LV   SS
Sbjct: 122 NTLLVLEKNTLADLVAAASS 141


>gi|328676938|gb|AEB27808.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida Fx1]
          Length = 136

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSRRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    
Sbjct: 62  EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|197304012|ref|ZP_03169044.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
           29176]
 gi|197296980|gb|EDY31548.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
           29176]
          Length = 136

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M ++ R  Y +RV++  A  +  PN  + + E      ISE +L  IL+ LV  G++  +
Sbjct: 1   MIISTRGRYALRVMIDLAGQD--PNTYTPLKEIAARQEISEKYLENILKSLVTGGLIFGL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG +L +  +  TI  +++ TE S     C   +  +C     C    + +K    
Sbjct: 59  RGKGGGYKLTKKPEDYTISSILRLTEGSLAPVACLEENATECEREAVCPTRPLWKKLDTL 118

Query: 118 FFDVLTQYSIECLV 131
             D L   S++ L+
Sbjct: 119 IQDYLGSVSLKDLI 132


>gi|260906649|ref|ZP_05914971.1| BadM/Rrf2 family transcriptional regulator [Brevibacterium linens
           BL2]
          Length = 152

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 30/145 (20%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T ++DY +R L+  A + +  P    ++ +   I + FL  IL  L +  IV +VRG
Sbjct: 1   MRVTTKSDYALRALIEIANVTDGEPISADELGKRQDIPKGFLQAILADLRRVEIVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------------- 106
           + GG RL + A   T+ DV++A               +D PLV   G             
Sbjct: 61  KSGGWRLTKSASATTVADVIRA---------------VDGPLVSIYGQRPEVVEYDDAAE 105

Query: 107 -LTSVLRKALNAFFDVLTQYSIECL 130
            L  V   A  A  DVL Q +IE L
Sbjct: 106 SLQQVWIAARFALRDVLEQVTIEQL 130


>gi|283458758|ref|YP_003363397.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
 gi|283134812|dbj|BAI65577.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
          Length = 222

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RVLM   A+         +IAE        + K +  LV  G +++ RG
Sbjct: 67  MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 126

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L       T+  +++ATE    + EC       CPL   C L +VL KA  AF+
Sbjct: 127 RSGGVMLSDAGRSATVGTILRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 185

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             +    I  L      +  +F
Sbjct: 186 ASVDSVIISELTAGARPVGPVF 207


>gi|116624954|ref|YP_827110.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116228116|gb|ABJ86825.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 141

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          MH + + +Y ++ +   A   +  P RI+ IA+   I + FL  IL  L +AG VE+ RG
Sbjct: 1  MHTSVKGEYALQAIFDLASQRSGEPIRIADIAQRQKIPQKFLELILASLKQAGFVESRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L RPAD +T+ +V++  E
Sbjct: 61 AEGGYLLSRPADSLTVGEVLRYVE 84


>gi|332521686|ref|ZP_08398139.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
           5H-3-7-4]
 gi|332042775|gb|EGI78975.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
           5H-3-7-4]
          Length = 135

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L+Y A      P +I+ I++A  IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALVYLAKQEVRVPVQIATISKAENISQKFLESILLTLKKKGILGSKKGKL 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + + +V++  E    +  C    F     DCP    C + +++ +  ++
Sbjct: 62  GGYYLVKEPETVAMAEVMRVLEGPIAMVPCVSLNFYEPCDDCPDETVCAVHNLMEEVRDS 121

Query: 118 FFDVLTQYSI 127
              +    ++
Sbjct: 122 SLKIFNNKTL 131


>gi|313894415|ref|ZP_07827980.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441239|gb|EFR59666.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 138

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A +    N  I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEYGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
           + GG RL +   +  + +++ A E+S  +  C       CP+   C LT+ L + L + F
Sbjct: 61  KYGGYRLVKLPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDC-LTAPLWQYLQDEF 119

Query: 119 FDVLTQYSIECLVRNR 134
             V+ + S++ ++ ++
Sbjct: 120 RHVMERVSLQDVMDHK 135


>gi|253574913|ref|ZP_04852253.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251845959|gb|EES73967.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 145

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++ +  YG+ ++M   A + + P  +  IAE   +SE +L +++ PL  AG+V++VRG
Sbjct: 7  LKISTKGRYGLTIMMELAAKYGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 66

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L + A +IT  D+++  E
Sbjct: 67 AYGGYILSKEASEITAGDIIRVLE 90


>gi|290476020|ref|YP_003468917.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus bovienii SS-2004]
 gi|289175350|emb|CBJ82153.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus bovienii SS-2004]
          Length = 164

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I + +V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRNAGNIFVAEVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
             L+  S+E LV+N+
Sbjct: 119 SFLSSISLEELVKNQ 133


>gi|297562143|ref|YP_003681117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846591|gb|ADH68611.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 143

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD  +R++M  A+ ++     ++ +A    +    + K +  L   G+VE  RG
Sbjct: 1   MRLTAFTDVSLRLVMRLAVADEGELLTTRAVAGMLSVPYTHMAKAVARLSDMGLVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L     + ++  +V+  E +  +A C       CPL  +C L   LR+A  AF+
Sbjct: 61  RNGGLLLTESGRRASVGSIVRELEGAGELAGC--EDDPPCPLRAACRLRGALREAHEAFY 118

Query: 120 DVLTQYSIECLV 131
             L   ++E LV
Sbjct: 119 TSLDGVTVESLV 130


>gi|163802461|ref|ZP_02196354.1| hypothetical protein 1103602000590_AND4_19427 [Vibrio sp. AND4]
 gi|159173762|gb|EDP58577.1| hypothetical protein AND4_19427 [Vibrio sp. AND4]
          Length = 168

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG RL   A  I I  V+ A +ES    +C    K DC
Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESIDATKCQG--KGDC 98


>gi|119493246|ref|ZP_01624086.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
           PCC 8106]
 gi|119452719|gb|EAW33897.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
           PCC 8106]
          Length = 147

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++  ++ P  ++ IA    +   +L K+L  + +AG+VE+VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQQEFGPTSVNAIAHRQKLPAPYLEKLLIEMRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   +I++  +++A  ES    E    H+ +  L       ++  +      
Sbjct: 61  SQGGYQLSRSPAKISLGQILEAVGESI---EPLPRHQPNAELAEDWVTFTLWNRLHQKLK 117

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L   S+E L  +  S +
Sbjct: 118 EALYSISLEDLYYDARSWQ 136


>gi|313498421|gb|ADR59787.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           BIRD-1]
          Length = 179

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++          + +  +AE   + + +L K+   L +AG+V    G RGG R
Sbjct: 9   EYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA QI++LD+V A +    + +C         F          G+C + +V+  A  
Sbjct: 69  LARPAAQISVLDIVNAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIHAVMLGAQK 128

Query: 117 AFFDVLTQYSI 127
              + L Q ++
Sbjct: 129 RMEESLAQQTV 139


>gi|313112815|ref|ZP_07798462.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624885|gb|EFQ08193.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 152

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL +     T  ++++A E S     C  S   +CP+   C      + L + +N
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMWEQCFTLPFWTGLDEVIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 QYIDSVT 127


>gi|229070249|ref|ZP_04203500.1| Transcriptional regulator [Bacillus cereus F65185]
 gi|228712867|gb|EEL64791.1| Transcriptional regulator [Bacillus cereus F65185]
          Length = 133

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  + + A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMFFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + EC    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC 100


>gi|16800618|ref|NP_470886.1| hypothetical protein lin1550 [Listeria innocua Clip11262]
 gi|16414037|emb|CAC96781.1| lin1550 [Listeria innocua Clip11262]
          Length = 140

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLSDLLKHSTD 129


>gi|134099519|ref|YP_001105180.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291008706|ref|ZP_06566679.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133912142|emb|CAM02255.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 160

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +++  ++ +  L+  A  +D  P   S++A    +   +L K LQ LV+AG++ +  G
Sbjct: 1  MRMSEGVEWALHSLLALAWLDDGRPVPTSRLAAGNDLPPAYLNKQLQALVRAGLLVSTPG 60

Query: 60 RRGGVRLCRPADQITILDVVKA---TEESF 86
           RGG  L RP ++IT++DVV A    EE+F
Sbjct: 61 ARGGFSLARPPEKITLMDVVAAIEGPEEAF 90


>gi|189220122|ref|YP_001940762.1| transcriptional regulator YrzC [Methylacidiphilum infernorum V4]
 gi|189186980|gb|ACD84165.1| Putative transcriptional regulator YrzC [Methylacidiphilum
           infernorum V4]
          Length = 154

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTKR+ Y IR L+Y A         I +IAE   I + FL  IL  L   G + + RG
Sbjct: 1   MFLTKRSKYAIRALLYLAKEQQRGTILIQEIAEKEKIPKKFLESILLELKNNGFLSSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L  P ++I I  V++  +       C +        DC    +C +  ++++  
Sbjct: 61  KGGGYALEYPPEKIPIGSVIRLIDGPLAPVRCVSQTAYAPCEDCLDEKTCVIRLLMKETR 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
           +    VL + S++ L++  S +K     G
Sbjct: 121 DVISTVLDKTSLKELLQKESQLKTEATEG 149


>gi|328956203|ref|YP_004373536.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
 gi|328456527|gb|AEB07721.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
          Length = 162

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY  R+L            +   AE   +   F   I   L K G +E++RG 
Sbjct: 1   MDISRKTDYAFRILAMLVGSKGSLLSVRTAAEEMDVPYSFARSIQHELTKVGFIESLRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL      IT+ D+++A +    V +C    K  CP   SC    +   A     D
Sbjct: 61  RGGMRLKIDPASITVNDIIEAMQGPLVVNKCLKDGK-PCPRRESCCYHPIWIGAKALLRD 119

Query: 121 VLTQYSIE 128
            L+  ++E
Sbjct: 120 YLSSVTLE 127


>gi|320157286|ref|YP_004189665.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
 gi|81844780|sp|Q8DEY6|ISCR_VIBVU RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371155|sp|Q7MNG3|ISCR_VIBVY RecName: Full=HTH-type transcriptional regulator iscR
 gi|319932598|gb|ADV87462.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I+I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   I+
Sbjct: 119 DFLNNITLGELMSDNEVIE 137


>gi|269127656|ref|YP_003301026.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
           DSM 43183]
 gi|268312614|gb|ACY98988.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
           curvata DSM 43183]
          Length = 146

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LTK TD  +R+ M  A+ +  P  +    Q+AEA       + K++  L   G++E  
Sbjct: 1   MRLTKFTDLALRISMRLAVAD--PAEVYTTKQVAEAVGAPYTHVAKVVSRLQHLGVLEAR 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG+ L       +I  +++  E    VA C  S    CPL  +C L   L +A  A
Sbjct: 59  RGRGGGLVLTERGRDASIGWLMRELEGYGDVAGCEDSPP--CPLRAACRLRGALSRAQEA 116

Query: 118 FFDVLTQYSIECLVRNRSS 136
           F+  L   ++  LV   S+
Sbjct: 117 FYAALDPVTVRELVEAPSA 135


>gi|150018353|ref|YP_001310607.1| BadM/Rrf2 family transcriptional regulator [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904818|gb|ABR35651.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          beijerinckii NCIMB 8052]
          Length = 167

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y I  L+Y   +       I  +A    ISE +L K+   L KAGI++++ G
Sbjct: 1  MKFSVGVEYAIHCLLYMVKLEEGKSVGIRDLATFQGISETYLSKVYAKLSKAGIIKSIPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87
           +GG  L R A++IT  D+V+A E  ESFF
Sbjct: 61 VKGGYALARSAEEITFWDIVEAVEGSESFF 90


>gi|163814282|ref|ZP_02205671.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
 gi|158449917|gb|EDP26912.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
          Length = 144

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  A   D  P  I  +A    ISE +L +I   L   G+V++ RG
Sbjct: 1   MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSMLNSGGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ TE       C  + +  C     C    + R+   A  
Sbjct: 61  PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCDREARCSTIGLWRRLDKAIR 120

Query: 120 DVLTQYSIECLVRNR 134
           DV+   +I  LV  R
Sbjct: 121 DVVDTTTIADLVAER 135


>gi|319896708|ref|YP_004134901.1| transcriptional regulator [Haemophilus influenzae F3031]
 gi|317432210|emb|CBY80562.1| predicted transcriptional regulator [Haemophilus influenzae
          F3031]
          Length = 150

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 SGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|295093897|emb|CBK82988.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
           ART55/1]
          Length = 144

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  A   D  P  I  +A    ISE +L +I   L   G+V++ RG
Sbjct: 1   MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSVLNSGGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ TE       C  + +  C     C    + R+   A  
Sbjct: 61  PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCEREARCSTIGLWRRLDKAIR 120

Query: 120 DVLTQYSIECLVRNR 134
           DV+   +I  LV  R
Sbjct: 121 DVVDTTTIADLVAER 135


>gi|260430264|ref|ZP_05784238.1| putative transcriptional regulator [Citreicella sp. SE45]
 gi|260418736|gb|EEX11992.1| putative transcriptional regulator [Citreicella sp. SE45]
          Length = 126

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 56/100 (56%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + +AE   +S   L KI+Q L +AG+V+T RG  GG  L R   +I + DVV   EE   
Sbjct: 16  ADLAEEFQLSRNHLIKIIQKLSRAGLVQTRRGGGGGATLARHPKEIRLGDVVLVLEEGQA 75

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           + ECF  +  DC + G C LT+ LR A  AF + L + ++
Sbjct: 76  LVECFQPNGGDCTIDGCCRLTTRLRVAEMAFIENLNRSTV 115


>gi|209694305|ref|YP_002262233.1| HTH-type transcriptional regulator [Aliivibrio salmonicida
          LFI1238]
 gi|226711609|sp|B6EGX4|ISCR_ALISL RecName: Full=HTH-type transcriptional regulator iscR
 gi|208008256|emb|CAQ78401.1| HTH-type transcriptional regulator [Aliivibrio salmonicida
          LFI1238]
          Length = 168

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG RL    D+I +  V+ A +ES    +C  
Sbjct: 61 PGGGYRLGLKPDEIAVGMVISAVDESVDATKCHG 94


>gi|300724150|ref|YP_003713467.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus nematophila ATCC 19061]
 gi|81322241|sp|Q8GLE9|ISCR_XENNA RecName: Full=HTH-type transcriptional regulator iscR
 gi|23345066|gb|AAN17744.1| putative iron-sulfur cluster regulator protein IscR [Xenorhabdus
           nematophila]
 gi|297630684|emb|CBJ91349.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus nematophila ATCC 19061]
          Length = 164

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + +V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGRDAGRIFVAEVISAVDESVDATRCQG--KEGCQGGDRCLTHALWRDLSERIT 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+E LV+N+
Sbjct: 119 SFLGSISLEELVKNQ 133


>gi|323518180|gb|ADX92561.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 164

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D P     +AE   +S  F+ KI   L KAG+V    G RGG  L R A +I+ LD+V
Sbjct: 3   NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIV 62

Query: 80  KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
            A E    + EC         F +   D    G C + +V+ +A  A  D L  +++
Sbjct: 63  NAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 119


>gi|257066428|ref|YP_003152684.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus
          prevotii DSM 20548]
 gi|256798308|gb|ACV28963.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus
          prevotii DSM 20548]
          Length = 133

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  YG+R + Y A + D     +S++++   +SE +L ++++ L   G++ + RG
Sbjct: 1  MKLSTRGRYGLRAMCYLASNKDRGYISVSEMSDKLNLSENYLEQLIRLLKNDGLITSARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           +GG ++ R  D+I++ +V++  E +  +++C +
Sbjct: 61 PKGGYKITRDLDEISVGEVLRVLEGNITMSDCVS 94


>gi|307721561|ref|YP_003892701.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
          autotrophica DSM 16294]
 gi|306979654|gb|ADN09689.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
          autotrophica DSM 16294]
          Length = 134

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRG 59
          ++ ++ YG+  +   A++N   N++ QI E   ++++   +L +IL  L K G V +VRG
Sbjct: 4  VSTKSLYGVAAM--HALYNSPRNKLMQIKEIAAVTQISHGYLEQILSTLKKHGFVISVRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFF 87
            GG +L   A +I +LDVV+A E   F
Sbjct: 62 ANGGYKLASDASKIIVLDVVEALEGELF 89


>gi|302036962|ref|YP_003797284.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300605026|emb|CBK41359.1| putative HTH-type transcriptional regulator, rrf2 family
           [Candidatus Nitrospira defluvii]
          Length = 141

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K+++YG+R L+  C  +     +  +IAE   I   FL +IL  L +AG++ + RG
Sbjct: 1   MKFSKKSEYGLRALLELCETYGGRVLQRHEIAERQNIPVEFLEQILLALKRAGLLASRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVG--SCGLTSVLRK 113
            RGG  L +  + IT+  V++  +       C +        DCP     SC L   + +
Sbjct: 61  VRGGYSLIKSPEDITLGQVIRILDGPLAPISCVSKTAYQKCADCPYAAKPSCPLQQAMGE 120

Query: 114 ALNAFFDVLTQYSI 127
             +A  ++L  Y++
Sbjct: 121 VRDAIANILDHYTL 134


>gi|139439175|ref|ZP_01772627.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
          25986]
 gi|133775522|gb|EBA39342.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
          25986]
          Length = 143

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  Y +R+++Y A   D  ++I+  ++A+   IS+ +L ++++PL+KAG++ +VR
Sbjct: 1  MLISSKGRYALRLMIYIAALGDAEDKIALREVADREHISQKYLEQLVRPLMKAGLLRSVR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          G+ GG  + +   ++   D+++A E S     C
Sbjct: 61 GKGGGYMMAKDPAEVRAGDILRAVEGSTAPVAC 93


>gi|297193473|ref|ZP_06910871.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718251|gb|EDY62159.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 147

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R +M  A+     P    ++AE   +    + K +  L   G++E  RG
Sbjct: 1   MRLTKFTDLALRAVMRLAVLEQGGPLTTREVAEEMNVPYAHMAKAIARLQHLGVLEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L     + ++  +V+  E    V  C       CPL G+C L   LR A  AF 
Sbjct: 61  RGGGLELTVLGRRASVGWLVRELEGEGEVVAC--EGDAPCPLRGACRLRRALRDAQEAFH 118

Query: 120 DVLTQYSIECLV 131
             L   ++  LV
Sbjct: 119 ATLDPLTVADLV 130


>gi|160942312|ref|ZP_02089621.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434869|gb|EDP12636.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
           BAA-613]
          Length = 179

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A      +   +I +A  I+ +F+ K+L+ L  AG V +++G 
Sbjct: 26  MQLTMTTDYALRCLLYLAGKEGVSSS-PEIGKAVGINNIFVQKVLRVLRDAGFVSSLKGG 84

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
            GG  L +  ++I +LD++   E++  +  C  + 
Sbjct: 85  TGGYWLAKKPEEIVLLDIILLFEKTMKINRCLEAE 119


>gi|332284501|ref|YP_004416412.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428454|gb|AEC19788.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 164

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 14/111 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           + ++K  DYG  VL + A     P R+   S +A    + +  + KIL+ L +  +V + 
Sbjct: 2   LRISKIIDYGTLVLTHMA---GSPERMFSASDLASTLGLGQPTVSKILKLLGQHELVTSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGL 107
           RG RGG  L RPA QI++ D++ A EE  F + EC A       L G+C +
Sbjct: 59  RGARGGYILSRPASQISVADIIDALEEQPFGLTECTA-------LPGACSV 102


>gi|320102385|ref|YP_004177976.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
           43644]
 gi|319749667|gb|ADV61427.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
           ATCC 43644]
          Length = 137

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
            D P  + +IA    I E +L +IL  L  AG+V++VRG  GG RL RP  ++T+ +V++
Sbjct: 24  RDEPIPLREIAAEDGIPERYLVQILLQLKGAGLVQSVRGSTGGYRLARPPHRLTLGEVIR 83

Query: 81  ATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           A   S        +  +  PL  G   L  V R    A + +L Q ++  LV    S
Sbjct: 84  AIGGS--------ASPLPQPLGPGGRALAQVWRAIEQAEWSILDQTTLAQLVPPEDS 132


>gi|160935060|ref|ZP_02082446.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
 gi|156866513|gb|EDO59885.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
          Length = 134

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MH+T   DY +R++ + A           IAE   +   F  KIL+ LV   I+ + +G 
Sbjct: 1  MHMTLEADYAVRIVEFLA-EQGCKTDAHTIAEQTRVPLRFALKILRTLVSQDIIVSYKGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +GG +L  PA++IT+  V++A E  + +  C
Sbjct: 60 KGGYQLAHPAEEITLRQVIEAVEGPYVLNRC 90


>gi|239618077|ref|YP_002941399.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
 gi|239506908|gb|ACR80395.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
          Length = 159

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  T ++ Y +R L   A+  +  N    +++IAE   I   FL KI   L  AG V+  
Sbjct: 1   MGFTVKSSYALRALYELALAAESGNPKLSLAKIAERDMIPRDFLEKIFAELRDAGFVKAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG  L +PA++I + DV+   ++      C   +  +C +  +C +  V  +  N+
Sbjct: 61  RGRYGGYVLAKPANEIYLRDVILKLDKPMNSYVCVREN-TECDIDPNCTVKYVWFRLYNS 119

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L + ++  L+     +KK
Sbjct: 120 MMRELGKMTLADLIEIGEKLKK 141


>gi|315225080|ref|ZP_07866897.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944763|gb|EFS96795.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 145

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AIH+   +RI+   +AEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q  ++ VV+   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120

Query: 121 VLTQYSIECLVR 132
            LT+ SI    +
Sbjct: 121 ELTENSIASFAQ 132


>gi|37678938|ref|NP_933547.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|326423712|ref|NP_759435.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
           vulnificus CMCP6]
 gi|37197680|dbj|BAC93518.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319999071|gb|AAO08962.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
           vulnificus CMCP6]
          Length = 183

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 16  MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I+I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 76  PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 133

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   I+
Sbjct: 134 DFLNNITLGELMSDNEVIE 152


>gi|197121302|ref|YP_002133253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Anaeromyxobacter sp. K]
 gi|196171151|gb|ACG72124.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           K]
          Length = 157

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY I +L   A   +       +AE   +    + K+ + L KAG+V + RGR
Sbjct: 2   IRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L RPAD I+I ++V+A E    +  C    +    C L  +C   +       A 
Sbjct: 62  HGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
              L    +  +V   S+  K  +A
Sbjct: 122 QGALRGLPLSSIVLQHSNDPKNADA 146


>gi|121594469|ref|YP_986365.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606549|gb|ABM42289.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 179

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 11/131 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++          + +  +AE   + + +L K+   L +AG+V    G RGG R
Sbjct: 9   EYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAATEGVRGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA QI++LD+V A +    + +C         F          G+C + +V+  A  
Sbjct: 69  LARPAAQISVLDIVHAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIHAVMLGAQK 128

Query: 117 AFFDVLTQYSI 127
              + L Q ++
Sbjct: 129 RMEESLAQQTV 139


>gi|310827114|ref|YP_003959471.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
 gi|308738848|gb|ADO36508.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
          Length = 134

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R++   ++ +     +SQ+++   I + F +KI++ L +AG+V   RG 
Sbjct: 1   MLITRETDYALRLVR--SLADGERRSVSQLSDEEQIPKAFAYKIIKKLERAGLVSIARGS 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKID-CPLVGSCGLTSVLRKALNAF 118
            GG  L +P   I++ D++ A + S  ++ C  S ++ + C   GSC   + L       
Sbjct: 59  EGGCSLNKPTSAISLYDLMCAIDGSCSLSPCMESGYRCEWCEKHGSCCFHNHLMVIQEEL 118

Query: 119 FDVLTQYSIE 128
            D L   S+E
Sbjct: 119 NDRLKASSLE 128


>gi|260753319|ref|YP_003226212.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552682|gb|ACV75628.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
          subsp. mobilis NCIMB 11163]
          Length = 145

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 10 GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          G  VL   AIH +         IAE   I   +L KIL  L +AG++   RG+ GG+RL 
Sbjct: 9  GYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNGGLRLN 68

Query: 68 RPADQITILDVVKATEESFFVAECF 92
          RP + I++L++VKA +   +   CF
Sbjct: 69 RPPETISLLEIVKAIDGKDWGCGCF 93


>gi|163858175|ref|YP_001632473.1| RF2 family protein [Bordetella petrii DSM 12804]
 gi|163261903|emb|CAP44205.1| probable RF2 family protein [Bordetella petrii]
          Length = 162

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 13  VLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            L  CAI    P         +AE   + + +L K LQ L +AG+VET  G  GG RL R
Sbjct: 10  ALHSCAILAGLPPGRYLSTKALAELHGVPKEYLSKALQALSQAGLVETTLGPSGGYRLAR 69

Query: 69  PADQITILDVVKATEESFFVAECFASHKI----DCPLVG-----SCGLTSVLRKALNAFF 119
           P  +IT LD+V+A E     A  FA + I     C   G      C +  V+ +A  A+ 
Sbjct: 70  PGSEITFLDIVEAVEGR---ASTFACNNIRVNNPCRPSGHCDSKPCAIARVMWRADEAWR 126

Query: 120 DVLTQYSI 127
           + L + ++
Sbjct: 127 NALREVTL 134


>gi|108805159|ref|YP_645096.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
          xylanophilus DSM 9941]
 gi|108766402|gb|ABG05284.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
          xylanophilus DSM 9941]
          Length = 154

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 1  MHLTKRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ RTDY +R    L    +    P +   I+E   I + F+  IL  L +AGIV   
Sbjct: 1  MQVSARTDYALRAVAELARAGMEGSGPVKGEWISEVQKIPKKFMENILLDLKRAGIVRAQ 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83
          RG  GG  L RP  +I++ ++++A E
Sbjct: 61 RGASGGYWLARPPGEISLAEIIRAVE 86


>gi|89098510|ref|ZP_01171393.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89086755|gb|EAR65873.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 133

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 8/115 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +  T+Y +  +++  +   +    + ++AE   +S  +L K+L  L KAG++E+  G
Sbjct: 1   MKYSNATNYALHTMVHLMLEPGEGTVGVQELAEMQHLSPTYLSKVLTKLAKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
            +GG ++ R   +I+ LDV+ A E    + +C   H+        C + +V+R+A
Sbjct: 61  AKGGYKISRKKHEISFLDVIHAIEGETSLFDCSIHHE-------GCLIENVMRQA 108


>gi|154686893|ref|YP_001422054.1| YrzC [Bacillus amyloliquefaciens FZB42]
 gi|154352744|gb|ABS74823.1| YrzC [Bacillus amyloliquefaciens FZB42]
          Length = 138

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H D P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGDGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    ++IT  D+++  E      E     +
Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEE 97


>gi|217970609|ref|YP_002355843.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217507936|gb|ACK54947.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 160

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   A   D P  ++ IAE   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAARQGDGPVTLAGIAERQSISLSYLEQLFGKLRRHKLVNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R  D+IT+ D++ A +E     +C    K +C     C +T  L   LN   
Sbjct: 61  PGGGYRLARAMDEITVADIIIAVDEPMDATQCGG--KENCHDDHVC-MTHHLWSNLNQRI 117

Query: 119 FDVLTQYSIECLVRNR 134
           +  L   S+E LV+++
Sbjct: 118 YAYLDSVSLEALVKHQ 133


>gi|331005918|ref|ZP_08329266.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium
          IMCC1989]
 gi|330420274|gb|EGG94592.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium
          IMCC1989]
          Length = 173

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  AIH+D  P  +S+I++   IS  +L ++   L KA +V ++RG
Sbjct: 1  MRLTTKGRYAVTAMLDLAIHSDKGPVSLSEISKRQEISLSYLEQLFSKLRKADLVASIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R  D I I  +V A  ES     C
Sbjct: 61 PGGGYQLGRTLDTIYIAQIVDAVNESIDATNC 92


>gi|315282426|ref|ZP_07870843.1| Rrf2 family protein [Listeria marthii FSL S4-120]
 gi|313613931|gb|EFR87658.1| Rrf2 family protein [Listeria marthii FSL S4-120]
          Length = 140

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|229060442|ref|ZP_04197805.1| Transcriptional regulator [Bacillus cereus AH603]
 gi|228718825|gb|EEL70446.1| Transcriptional regulator [Bacillus cereus AH603]
          Length = 133

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1  MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           G +GG  L    + I+ LD++ A E    + EC
Sbjct: 59 SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC 92


>gi|16803555|ref|NP_465040.1| hypothetical protein lmo1515 [Listeria monocytogenes EGD-e]
 gi|224499825|ref|ZP_03668174.1| hypothetical protein LmonF1_09119 [Listeria monocytogenes Finland
           1988]
 gi|224501545|ref|ZP_03669852.1| hypothetical protein LmonFR_03342 [Listeria monocytogenes FSL
           R2-561]
 gi|254828251|ref|ZP_05232938.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829726|ref|ZP_05234381.1| hypothetical protein Lmon1_00155 [Listeria monocytogenes 10403S]
 gi|254898319|ref|ZP_05258243.1| hypothetical protein LmonJ_00850 [Listeria monocytogenes J0161]
 gi|254912189|ref|ZP_05262201.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936517|ref|ZP_05268214.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255025787|ref|ZP_05297773.1| hypothetical protein LmonocytFSL_04615 [Listeria monocytogenes FSL
           J2-003]
 gi|284801905|ref|YP_003413770.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
 gi|284995047|ref|YP_003416815.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
 gi|16410944|emb|CAC99593.1| lmo1515 [Listeria monocytogenes EGD-e]
 gi|258600639|gb|EEW13964.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609111|gb|EEW21719.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057467|gb|ADB68408.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
 gi|284060514|gb|ADB71453.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
 gi|293590162|gb|EFF98496.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|313623689|gb|EFR93841.1| Rrf2 family protein [Listeria innocua FSL J1-023]
          Length = 140

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|254994481|ref|ZP_05276671.1| hypothetical protein LmonocytoFSL_16972 [Listeria monocytogenes FSL
           J2-064]
          Length = 143

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|229488650|ref|ZP_04382516.1| transcriptional regulator [Rhodococcus erythropolis SK121]
 gi|229324154|gb|EEN89909.1| transcriptional regulator [Rhodococcus erythropolis SK121]
          Length = 154

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +    ++ P   +++AE   +S+ +L K L+ L  AG+V    GR GG  L
Sbjct: 6   GVEWSLHCCVVLSQSEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGRDGGYVL 65

Query: 67  CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120
            R  ++IT+LDVV+A   TE +F   E      +  P      +CG+  V+  A  A+  
Sbjct: 66  TRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQCRSACGIAKVMADAEKAWRA 125

Query: 121 VLTQYSIECLVR--NRSSIKKIFN 142
            L+  +I  L    +  +++KI  
Sbjct: 126 SLSGVTIADLAATLDLPALRKILT 149


>gi|300744304|ref|ZP_07073323.1| Rrf2 family protein [Rothia dentocariosa M567]
 gi|311112919|ref|YP_003984141.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
 gi|300380029|gb|EFJ76593.1| Rrf2 family protein [Rothia dentocariosa M567]
 gi|310944413|gb|ADP40707.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
          Length = 170

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +R++M  +   +     +Q I+E        + K +  LV  G++E+ RG
Sbjct: 1   MRLTAFSDVSLRIMMLLSSLQEGEKLSTQRISEGVGTPYNHVAKSVAFLVNQGLLESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L     + T+  V+++TE    + EC      +CPL   C L +VL +A  AF+
Sbjct: 61  RSGGVLLSETGRKATVGQVLRSTEGDIPMIEC-EDENGNCPLDSFCRLRTVLARAREAFY 119


>gi|116695452|ref|YP_841028.1| iron sulfur cluster assembly transcriptional regulator (SufA)
           [Ralstonia eutropha H16]
 gi|113529951|emb|CAJ96298.1| iron sulfur cluster assembly transcriptional regulator (SufA)
           [Ralstonia eutropha H16]
          Length = 156

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           + L+K TDYG  ++ + A +   P RI   +++A A  ++     KIL+ L +  ++E++
Sbjct: 2   LRLSKLTDYGTVIMTHLARN---PGRIYSAAEVAAAIGVAVPTASKILKMLARHHLLESL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RP  QI+I  V+ A E    + EC  +  + C   G C + +  +     
Sbjct: 59  RGANGGYLLARPPGQISIAQVIDAMEGPAGMTECSVAAGL-CAQEGLCAIRANWQSINQV 117

Query: 118 FFDVLTQYSI 127
            F  L   ++
Sbjct: 118 IFSALNGVTL 127


>gi|218885726|ref|YP_002435047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756680|gb|ACL07579.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 180

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + +++   ++  F+ +IL+ L + G+  + RG
Sbjct: 1   MKLAAKTRYAARILLALAMHGEESPMTTTALSQHTGVTVQFIEQILKTLKRGGLTRSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  ++IT+ ++V+  E    +  C +     C    SC   S   +A  A  
Sbjct: 61  ASGGHMLARTPEEITLSEIVRLMEGGIQLTVCCSGDANACARRASCLTRSAWVRASQALE 120

Query: 120 DVLTQYSIECLVRN 133
             L + ++  L+  
Sbjct: 121 HSLEETTLATLMEG 134


>gi|256392947|ref|YP_003114511.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256359173|gb|ACU72670.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 20/142 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY +RV++  A H     + S + +   +   F+  IL  L +A +V + RG 
Sbjct: 1   MHISAKADYAVRVMLELAAHGPGVVKASVVIDHQDLPRKFIEAILVELRRADLVRSHRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA  I+I  VV+A               +D PL    GL     +     + 
Sbjct: 61  DGGYTLARPAAAISIGSVVRA---------------VDGPLAEVRGL-----RPHETEYA 100

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
              ++  +C V  R++++K+ +
Sbjct: 101 GAAEHLADCWVAARAALRKVLD 122


>gi|46907743|ref|YP_014132.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47094363|ref|ZP_00232058.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217964338|ref|YP_002350016.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|226224116|ref|YP_002758223.1| hypothetical protein Lm4b_01525 [Listeria monocytogenes Clip81459]
 gi|254852139|ref|ZP_05241487.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|254931450|ref|ZP_05264809.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|290893874|ref|ZP_06556852.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|300764819|ref|ZP_07074809.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
 gi|46881012|gb|AAT04309.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017261|gb|EAL08099.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217333608|gb|ACK39402.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|225876578|emb|CAS05287.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605442|gb|EEW18050.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|290556591|gb|EFD90127.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293583001|gb|EFF95033.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|300514495|gb|EFK41552.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
 gi|307571096|emb|CAR84275.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
 gi|313608684|gb|EFR84520.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
 gi|328465553|gb|EGF36782.1| hypothetical protein LM1816_06485 [Listeria monocytogenes 1816]
 gi|328474876|gb|EGF45676.1| hypothetical protein LM220_11812 [Listeria monocytogenes 220]
 gi|332311957|gb|EGJ25052.1| HTH-type transcriptional regulator CymR [Listeria monocytogenes
           str. Scott A]
          Length = 140

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|325263740|ref|ZP_08130473.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324030778|gb|EGB92060.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 146

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  A ++ + P  + Q A+   IS  +L ++   L KAGIV +V+G
Sbjct: 1  MKVSTKGRYGLRALVDMAANSQEGPISLIQTAKRQNISLNYLEQVFGVLRKAGIVVSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            GG +L R AD IT+ ++++A E  F + +     + D
Sbjct: 61 AGGGYKLARSADSITVKEILEALEGEFSIIDKNGEEEAD 99


>gi|257439947|ref|ZP_05615702.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
 gi|257197554|gb|EEU95838.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
          Length = 149

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL +     T  ++++A E S     C  S   +CP+   C      + L + +N
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSEQCFTLPFWAGLDEVIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 QYIDSVT 127


>gi|228939890|ref|ZP_04102467.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972780|ref|ZP_04133379.1| Transcriptional regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979364|ref|ZP_04139700.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228780368|gb|EEM28599.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228786995|gb|EEM34975.1| Transcriptional regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819821|gb|EEM65869.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940538|gb|AEA16434.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 133

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + +C    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100


>gi|167033277|ref|YP_001668508.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           GB-1]
 gi|166859765|gb|ABY98172.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           GB-1]
          Length = 179

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 8   DYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  L++      +   + +  +AE   + + +L K+   L +A +V    G RGG  
Sbjct: 9   EYGIHCLLFLVDERGDSRESSVRDLAELQGVPQEYLAKVFTKLARAKLVVATEGVRGGFH 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RP+D+IT+LD+V A +    + +C         F          G+C + +V+  A  
Sbjct: 69  LARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFDGAAPGWATEGTCAIHAVMLGAQK 128

Query: 117 AFFDVLTQYSIECLVR 132
              + L Q +I  L R
Sbjct: 129 RMEEALAQQTILDLAR 144


>gi|254824426|ref|ZP_05229427.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|293593662|gb|EFG01423.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
          Length = 140

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|302335472|ref|YP_003800679.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
 gi|301319312|gb|ADK67799.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
          Length = 141

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y +RV+   A H  + + +  +++   IS  +L +++  + KAG VE++RG+ GG RL R
Sbjct: 11  YALRVMGDLATHEGWVS-LGDVSKRQGISRKYLEQVVSRMHKAGYVESLRGKGGGYRLTR 69

Query: 69  PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR---KALNAFFDVLT 123
             +  T+ ++++A E S     C   ++   CP   SC   ++ R   +    F D  T
Sbjct: 70  APEDYTLGEILRAAEGSLAPVACLDCTNDEICPQADSCPTVTIWRDLGRVTAGFLDSRT 128


>gi|301065061|ref|ZP_07205404.1| transcriptional regulator, Rrf2 family [delta proteobacterium
           NaphS2]
 gi|300440829|gb|EFK05251.1| transcriptional regulator, Rrf2 family [delta proteobacterium
           NaphS2]
          Length = 139

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+  +Y +R ++Y +        +R  ++AE   I   FL KI Q L K G++E  +
Sbjct: 1   MRLTRAGEYAVRCVLYLSKKGKGALVSR-KEVAEQAVIPSHFLAKIAQELAKVGMIEIRQ 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L    ++IT+L VV+      F+ +C    K  C    +C +  V  +A +  
Sbjct: 60  GAKGGFVLLMDPEEITLLQVVEIVIGEIFLNDCVVRPK-SCDASPNCSVHVVWMRARDQL 118

Query: 119 FDVLTQYSIECLVR 132
            D L   +   L++
Sbjct: 119 RDTLGSVTFAELIK 132


>gi|21911420|gb|AAM80543.1| StaS [Streptomyces toyocaensis]
          Length = 154

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T RTDY +R +   A   + P    +++    I   FLF IL+ L  A +V +VRG 
Sbjct: 1   MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L   A++IT+  V++A +         +   ++ P   +  L  V R    +   
Sbjct: 61  QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYPGPAAV-LPDVWRAVRTSLRQ 119

Query: 121 VLTQYSIECLVRN 133
           VL   ++  L R 
Sbjct: 120 VLETTTLADLARG 132


>gi|212702242|ref|ZP_03310370.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
 gi|212674305|gb|EEB34788.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
          Length = 149

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+  A   D    ++ Q+A+   IS  +L +I++ L   GI+  VRG
Sbjct: 1   MKFSTRTRYGLRFLLRLAAQPDNSLLQLGQVAQEESISPGYLEQIVRALKPLGILRAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P  +I + DV    E       C    K+ C   G C   +   +      
Sbjct: 61  SGGGYALSKPPSEINMEDVFLHLEGEISPVSCLGRGKV-CQREGLCSTRAFWHQLDEHVR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++ +  S
Sbjct: 120 DFLRHQTLQNIIESERS 136


>gi|126641679|ref|YP_001084663.1| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
 gi|169633489|ref|YP_001707225.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii SDF]
 gi|169796093|ref|YP_001713886.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii AYE]
 gi|169149020|emb|CAM86897.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii AYE]
 gi|169152281|emb|CAP01191.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii]
          Length = 147

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +++IA    IS  +L ++   L + G+V +VRG  GG  L R AD+IT+L++++A  E+ 
Sbjct: 18  LAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARNADEITVLEIIEAVNETV 77

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
               C   HK +C     C    + ++  +   D L + ++  L+ +R +++ +
Sbjct: 78  DATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLANLI-SRDNVQTV 128


>gi|71278574|ref|YP_267874.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
 gi|71144314|gb|AAZ24787.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
          Length = 168

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++   IH    P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVTIHAVSGPVSLADISERQGISLSYLEQLFSRLRKEGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG RL R + QI + DV+ A  ES    +C  S K +C     C LT  L + L+
Sbjct: 61  PGGGYRLGRCSAQIAVADVIYAVNESVDATKC--SGKGNCQDGEQC-LTHSLWEGLS 114


>gi|315125526|ref|YP_004067529.1| transcriptional repressor of the iscRSUA operon, involved in
          assembly of Fe-S clusters [Pseudoalteromonas sp.
          SM9913]
 gi|315014039|gb|ADT67377.1| transcriptional repressor of the iscRSUA operon, involved in
          assembly of Fe-S clusters [Pseudoalteromonas sp.
          SM9913]
          Length = 163

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H N  P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVALHANIGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
            GG  L R AD I++ DV+ A +ES     C  S+
Sbjct: 61 PGGGYLLGREADVISVGDVINAVDESVDATRCQRSN 96


>gi|317403134|gb|EFV83661.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 159

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 14/143 (9%)

Query: 1   MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  ++ +   L    + ND P   S++A A  +   +L K LQ LV+AGI  +  G
Sbjct: 1   MKMSEGVEWALHCCLTLAWVGNDGPVPTSRLAAAFELPSHYLNKFLQSLVRAGIFTSSAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV----------AECFASHKIDCPLVGSCGLTS 109
            +GG +L +  + I++LDVV A E   +           A C A           CG+ +
Sbjct: 61  AKGGFQLAKAPEAISLLDVVMAIEGDEWAFRCTEIRQRGAGCLAKPN---DFARPCGIAA 117

Query: 110 VLRKALNAFFDVLTQYSIECLVR 132
            +++A  A+   L   +I  L++
Sbjct: 118 AMQRAETAWRKELAAQTIADLIK 140


>gi|225026850|ref|ZP_03716042.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
 gi|224955857|gb|EEG37066.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
          Length = 152

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++  A+++    P R+  IA+   +S  +L +I+  L KAG + ++R
Sbjct: 7   MRISTKGRYALRLMLDIAMNDAEGKPVRVKDIAKRQEVSGKYLEQIVSVLTKAGYLRSIR 66

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +  D+ T+  +++ TE S     C       C  +  C    + RK   A 
Sbjct: 67  GPQGGYLLTKRPDEYTVGMILRITEGSMEPVPCLEEGSEVCERMEECITIPLWRKLSEAI 126

Query: 119 FDVLTQYSIECLV 131
             VL   +++ L+
Sbjct: 127 SGVLDHTTLDDLI 139


>gi|219883346|ref|YP_002478507.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
 gi|219862191|gb|ACL42531.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 161

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFV-AECF 92
           +S  +L K +Q L + G+V +++G  GG  L RPADQI+ILDVV+A E  +  FV  E  
Sbjct: 38  VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIR 97

Query: 93  ASHKIDCPL---VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
               +  P    +  C +   +  A  A+ D L + +I  L    SS
Sbjct: 98  QRGPLGTPPEKCLTHCPIAIAMMTAETAWRDSLNKITIGDLAHQVSS 144


>gi|219883349|ref|YP_002478510.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
 gi|219862194|gb|ACL42534.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 164

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFV-AECF 92
           +S  +L K +Q L + G+V +++G  GG  L RPADQI+ILDVV+A E  +  FV  E  
Sbjct: 38  VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIR 97

Query: 93  ASHKIDCPL---VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
               +  P    +  C +   +  A  A+ D L + +I  L    SS
Sbjct: 98  QRGPLGTPPEKCLTHCPIAIAMMTAETAWRDSLNKITIGDLAHQVSS 144


>gi|116872944|ref|YP_849725.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741822|emb|CAK20946.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 140

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYILNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ + 
Sbjct: 113 DVLDQTTLADLLKHSTD 129


>gi|325284831|ref|YP_004264293.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
          proteolyticus MRP]
 gi|324316546|gb|ADY27658.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
          proteolyticus MRP]
          Length = 146

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
          +Q+A    +   +L K+LQ L +AG+++ +RG+ GG RL RP   ITILDVV A +    
Sbjct: 26 AQLAGRTQVPAQYLSKVLQQLHRAGLLQALRGKYGGYRLARPPQDITILDVVNAVDPLQR 85

Query: 88 VAEC 91
          +  C
Sbjct: 86 IRHC 89


>gi|319956225|ref|YP_004167488.1| transcriptional regulator, badm/rrf2 family [Nitratifractor
           salsuginis DSM 16511]
 gi|319418629|gb|ADV45739.1| transcriptional regulator, BadM/Rrf2 family [Nitratifractor
           salsuginis DSM 16511]
          Length = 134

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ ++Y +  L      ++ P    Q+A   CI + FL KIL  L K  I+E+ RG 
Sbjct: 1   MLLTRASEYALLSLDKIR-KSEQPIGSEQLARELCIPKSFLAKILHNLAKQEILESHRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
           +GG  +    DQI++ DV+ A E +S  V +C   +  +CP   +G C ++  L      
Sbjct: 60  QGGFTIKAGMDQISVYDVILAAEGKSPAVFDC-TQYAENCPNGSIGGCAISPFLATFQGK 118

Query: 118 FFDVLTQYSIECL 130
             D L + +++ L
Sbjct: 119 IDDFLNELTLDQL 131


>gi|310659303|ref|YP_003937024.1| badm/rrf2 family transcriptional regulator [Clostridium
          sticklandii DSM 519]
 gi|308826081|emb|CBH22119.1| Transcriptional regulator, BadM/Rrf2 family [Clostridium
          sticklandii]
          Length = 128

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ +DY +R++ Y A   +     S IA+   +   F+ KIL+ L  AGI +  RG 
Sbjct: 1  MKITQESDYALRIVQYLANQEESRVGASIIAKEQDVPLRFVLKILRKLNAAGITKAYRGV 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           GG  L +    I+  +V++A E   ++  C A +K +C
Sbjct: 61 SGGYALTKEPGDISYKEVIEAIEGDIYLNRCLA-NKTNC 98


>gi|237740315|ref|ZP_04570796.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
 gi|262068259|ref|ZP_06027871.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
 gi|229422332|gb|EEO37379.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
 gi|291377997|gb|EFE85515.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 141

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     QI +  + K  ++   V +C   A  K       +CG T +  +  N
Sbjct: 61  GPTGGYKLTLKPSQINLYTIYKILDDEERVIDCNENAEGKAHNCNEEACGETCIWSRLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S+E  ++N   I
Sbjct: 121 AMTKILSETSLEDFIKNGKKI 141


>gi|169824321|ref|YP_001691932.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|303234034|ref|ZP_07320683.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
 gi|167831126|dbj|BAG08042.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302494959|gb|EFL54716.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
          Length = 135

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCP 100
            +GG  L +   +I++ ++++  EE F V EC       S +  CP
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGLCSREDTCP 106


>gi|94985327|ref|YP_604691.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94555608|gb|ABF45522.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 148

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ RT   + +L     + D  +    +A +  +  + + ++   L  AG+VET RG+  
Sbjct: 11  LSTRTAMAVHILTLVGANPDVAHSSEWLAGSLGVHPVMVRQVTSRLRAAGLVETRRGK-A 69

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G+RL RPA  +T+LDV +A E+   +    A     CP VGS G+ +VL
Sbjct: 70  GLRLTRPASAMTLLDVYRAVEDGDALLALHARPNPSCP-VGS-GIQAVL 116


>gi|296116552|ref|ZP_06835162.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976764|gb|EFG83532.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 152

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY +  L+      +       ++ +  I E  + K+L+ L   GIV + RG 
Sbjct: 2   LKLSKLTDYAVVALVRLGQKEEVTTS-PVLSRSTGIPEPTIAKVLKVLAAQGIVISQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP  QI++  V++A +    +  C      +C     CGL         A  D
Sbjct: 61  RGGYRLARPLAQISVAAVIQAIDGPISLTTCVDGG--ECDARSKCGLVGQWDAVNGAILD 118

Query: 121 VLTQYSIE 128
            L+  S+ 
Sbjct: 119 ALSSISLS 126


>gi|302380671|ref|ZP_07269136.1| transcriptional regulator, Rrf2 family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311614|gb|EFK93630.1| transcriptional regulator, Rrf2 family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 135

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCP 100
            +GG  L +   +I++ ++++  EE F V EC       S +  CP
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGLCSREDTCP 106


>gi|327540342|gb|EGF26928.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 139

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R +         P     +AE   +   +L ++LQ L  AG+V +  G  G
Sbjct: 2   LSKTAEYALRAIACMGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101
           G  LC P D +TILDVV        + +C     SH   CPL
Sbjct: 62  GYELCVPTDTLTILDVVNTVAPVERIRKCPLGLKSHTDLCPL 103


>gi|260893739|ref|YP_003239836.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
 gi|260865880|gb|ACX52986.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
          Length = 137

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 1   MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +R T+Y IR L++ A          +IAEA  I   FL KILQ L +AG+V + RG
Sbjct: 1   MELIRRNTEYAIRALVHLAACKGEVVSAKEIAEAQDIPIEFLQKILQRLGRAGLVVSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKALN 116
             GG  L R   +I +L+V+   +    V +CF   +  C    +C L     VL + + 
Sbjct: 61  AAGGFSLARKPSEINLLEVITVMQGRPAVNKCFLGREA-CERAPTCRLKYNWLVLEQKIG 119

Query: 117 AFF-DVLTQYSIECLV 131
            F  DV  Q  ++ L+
Sbjct: 120 EFLADVTLQDLVDQLL 135


>gi|289434795|ref|YP_003464667.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171039|emb|CBH27581.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633162|gb|EFS00046.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
 gi|313637744|gb|EFS03103.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
          Length = 140

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    + P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSSIK 138
           DVL Q ++  L+++ S  +
Sbjct: 113 DVLDQTTLSDLLKHNSDTE 131


>gi|239904872|ref|YP_002951610.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239794735|dbj|BAH73724.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 150

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            +IA+   I + FL  IL  L + G V + RG+ GG  L RPA ++T+  V++  +    
Sbjct: 29  GEIADRQAIPKRFLEVILNQLRQGGFVASQRGKEGGFYLARPASEVTVGAVIRFMDGPIS 88

Query: 88  VAECFASHKI-DCPLVGSC---GLTSVLRKALNAFFDVLT 123
             +C       DCPL G C   GL    R AL   +D  +
Sbjct: 89  PVDCHRERPGHDCPLQGGCVFRGLWDEARDALERVYDTRS 128


>gi|78358758|ref|YP_390207.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221163|gb|ABB40512.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 164

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   + YG R+L+  A+H  + P  +  +AE   +S+ +L KI + L +AG ++  RG
Sbjct: 1   MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLKEAGFLKAQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R     T+ DVV+  E    +  C    +  C     C    + ++A  A F
Sbjct: 61  PNGGHTLARDVTTFTVGDVVRLLEGGTDIVGC-GRDEEGCTHAPGCLTRMLWKEAGIAMF 119

Query: 120 DVLTQYSIECLV 131
           + L +++   LV
Sbjct: 120 ERLDRFTFAELV 131


>gi|259907700|ref|YP_002648056.1| DNA-binding transcriptional regulator IscR [Erwinia pyrifoliae
           Ep1/96]
 gi|224963322|emb|CAX54807.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283477554|emb|CAY73470.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
           12163]
 gi|310764792|gb|ADP09742.1| DNA-binding transcriptional regulator IscR [Erwinia sp. Ejp617]
          Length = 165

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + AD I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117

Query: 119 FDVLTQYSIECLVRNR 134
            D L   ++  LV N+
Sbjct: 118 SDFLNNITLAELVNNQ 133


>gi|148825338|ref|YP_001290091.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae
          PittEE]
 gi|260582529|ref|ZP_05850319.1| iron-sulfur cluster assembly transcription factor IscR
          [Haemophilus influenzae NT127]
 gi|148715498|gb|ABQ97708.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae
          PittEE]
 gi|260094340|gb|EEW78238.1| iron-sulfur cluster assembly transcription factor IscR
          [Haemophilus influenzae NT127]
          Length = 150

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|188533165|ref|YP_001906962.1| DNA-binding transcriptional regulator IscR [Erwinia tasmaniensis
           Et1/99]
 gi|226711618|sp|B2VI31|ISCR_ERWT9 RecName: Full=HTH-type transcriptional regulator iscR
 gi|188028207|emb|CAO96065.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 165

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + AD I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117

Query: 119 FDVLTQYSIECLVRNR 134
            D L   ++  LV N+
Sbjct: 118 SDFLNNITLAELVNNQ 133


>gi|15640766|ref|NP_230396.1| hypothetical protein VC0747 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591450|ref|ZP_01678726.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121729724|ref|ZP_01682165.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673230|ref|YP_001216232.1| hypothetical protein VC0395_A0276 [Vibrio cholerae O395]
 gi|153216250|ref|ZP_01950350.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153800571|ref|ZP_01955157.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153817260|ref|ZP_01969927.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822734|ref|ZP_01975401.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153824617|ref|ZP_01977284.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153829399|ref|ZP_01982066.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|227080926|ref|YP_002809477.1| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2]
 gi|254225012|ref|ZP_04918626.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285465|ref|ZP_04960429.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254847884|ref|ZP_05237234.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744554|ref|ZP_05418505.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
 gi|262161312|ref|ZP_06030423.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
 gi|262168805|ref|ZP_06036500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
 gi|262190470|ref|ZP_06048721.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
 gi|262402868|ref|ZP_06079429.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
 gi|297581146|ref|ZP_06943070.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499120|ref|ZP_07008927.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655192|gb|AAF93912.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546701|gb|EAX56880.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121628541|gb|EAX61024.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114395|gb|EAY33215.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124123860|gb|EAY42603.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125622399|gb|EAZ50719.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126512176|gb|EAZ74770.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519765|gb|EAZ76988.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146315113|gb|ABQ19652.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148875119|gb|EDL73254.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149741835|gb|EDM55864.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150424327|gb|EDN16264.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008814|gb|ACP05026.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012571|gb|ACP08781.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|254843589|gb|EET22003.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737585|gb|EET92979.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
 gi|262022923|gb|EEY41629.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
 gi|262029062|gb|EEY47715.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
 gi|262033642|gb|EEY52131.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
 gi|262351650|gb|EEZ00783.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
 gi|297534462|gb|EFH73299.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543453|gb|EFH79503.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 188

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 16  MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   +  I+I  V+ A +ES    +C  + K DC     C LT  L + L++
Sbjct: 76  PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 130


>gi|222823943|ref|YP_002575517.1| BadM/Rrf2 family transcriptional regulator [Campylobacter lari
           RM2100]
 gi|222539165|gb|ACM64266.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter lari
           RM2100]
          Length = 134

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L++ A  +  P  +  ++    I + FL KILQ L K  ++++ +G 
Sbjct: 1   MLFTKASEYALLSLIHIA-KSKEPQDVDTMSNVLDIPKSFLAKILQALAKDALLKSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
           +GG  L +   + T+ +++ + E +S  V EC  S+ I CP     +C +  +L K  N 
Sbjct: 60  KGGFVLIKQPSEYTLKEIINSVEKKSINVFEC--SNGI-CPSQKEDNCKIMPILVKLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             D L   ++E +++N 
Sbjct: 117 IDDFLVSITLEDIIQNN 133


>gi|70726295|ref|YP_253209.1| hypothetical protein SH1294 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68447019|dbj|BAE04603.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 140

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENSLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PAD+I   D+++  E    + E   S 
Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPITIVESIESE 96


>gi|319782786|ref|YP_004142262.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168674|gb|ADV12212.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 167

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 10  GIRVLMYCA-----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           G+   ++CA     +  +     + +AEA  +S  +L K L  L  A ++E+V G  GG 
Sbjct: 6   GVEAAIHCAATLASVEGNSTMPGAALAEAFGLSPSYLLKHLNMLSAARVLESVPGPAGGY 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAF 118
           RL RPA++IT+LD+V A E       C         K+D    V  CG+ + + KA  A+
Sbjct: 66  RLARPAERITLLDIVLAVEGREPAFRCGEIRQRGPVKLDASAYVKPCGINAAMLKAERAY 125

Query: 119 FDVLTQYSIECLV 131
              L +  +  +V
Sbjct: 126 RAALAETKLSDIV 138


>gi|312897950|ref|ZP_07757363.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
 gi|310620984|gb|EFQ04531.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
          Length = 173

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 9/123 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TDY  R+++Y A   +   +I+   +AE   I E FL KI++ L  A I+++ R
Sbjct: 32  MRLNQATDYAFRMVLYLATCPE-GTKITGAALAEKQNIPERFLLKIMRSLTAADIMKSYR 90

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R    IT+ DV+ A E    +  C A    D    G  G+ S+     NAF
Sbjct: 91  GVEGGFALQRDPKDITLYDVIDAVEGQTQLQRCLAD--TDACTRGCGGMCSL----YNAF 144

Query: 119 FDV 121
            ++
Sbjct: 145 EEI 147


>gi|292489066|ref|YP_003531953.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|292900194|ref|YP_003539563.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291200042|emb|CBJ47167.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291554500|emb|CBA22046.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|312173222|emb|CBX81477.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 165

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + AD I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117

Query: 119 FDVLTQYSIECLVRNR 134
            D L   ++  LV N+
Sbjct: 118 SDFLNNITLAELVNNQ 133


>gi|163940519|ref|YP_001645403.1| BadM/Rrf2 family transcriptional regulator [Bacillus
          weihenstephanensis KBAB4]
 gi|229012026|ref|ZP_04169205.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
 gi|163862716|gb|ABY43775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
          weihenstephanensis KBAB4]
 gi|228749114|gb|EEL98960.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
          Length = 133

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1  MKYSKATNYALHTMLFLA--EATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSS 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           G +GG  L    + I+ LD++ A E    + EC
Sbjct: 59 SGPKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC 92


>gi|297153681|gb|ADI03393.1| hypothetical protein SBI_00272 [Streptomyces bingchenggensis BCW-1]
          Length = 148

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT+ TD  +R +M  A+ +      ++ IA++  +    + K +  L   G+VE  RG
Sbjct: 3   VRLTRYTDLALRAVMRLAVMDGEELLTTRLIADSMNVPYTHMAKTIAHLQHLGVVEARRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L        + ++++  E       C    +  CPL G+C L   LR A  AF+
Sbjct: 63  RNGGLMLTDAGRNTRVGELIRVLEGDREAVVC--EGEAPCPLAGACRLRRALRDAQEAFY 120

Query: 120 DVLTQYSIECLV 131
             L Q ++  LV
Sbjct: 121 ASLDQVTVADLV 132


>gi|119371154|sp|Q9KTY3|ISCR_VIBCH RecName: Full=HTH-type transcriptional regulator iscR
          Length = 173

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG RL   +  I+I  V+ A +ES    +C  + K DC     C LT  L + L++
Sbjct: 61  PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 115


>gi|257093603|ref|YP_003167244.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046127|gb|ACV35315.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 164

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  ++ P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRCSEGPVTLAGISERQKISLSYLEQLFGKLRRYGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L RP  Q+T+ D+++A +E     +C    + +C     C +T  L   LN   
Sbjct: 61  PGGGYCLARPTSQMTVTDIIRAVDEPLDATQCGG--RENCHDDERC-MTHELWTTLNEKM 117

Query: 119 FDVLTQYSIECLV 131
           FD L+  ++  LV
Sbjct: 118 FDYLSSVTLNELV 130


>gi|325290921|ref|YP_004267102.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966322|gb|ADY57101.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 149

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A++  + P  I+ IA+   ISE +L ++L  + + G+++++RG
Sbjct: 1   MKISTKGRYGLRAILDVALNEKEGPVTINSIAKRQEISERYLEQLLIVMKQRGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L +   +I++ DV++A E      +C      + C     C    V      + 
Sbjct: 61  FQGGYLLNKEPREISVGDVIRALEGPIAPVDCVNDDDTEQCSRSNYCVTKIVWEDLKQSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL  YS+  L+     ++ I
Sbjct: 121 TKVLDSYSLRDLMEEEEKVRSI 142


>gi|57167906|ref|ZP_00367046.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter coli RM2228]
 gi|305432068|ref|ZP_07401235.1| rrf2 family protein [Campylobacter coli JV20]
 gi|57021028|gb|EAL57692.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter coli RM2228]
 gi|304445152|gb|EFM37798.1| rrf2 family protein [Campylobacter coli JV20]
          Length = 136

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y A H + P  +  +A    I + FL KILQ L K  ++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIA-HKENPQDVDSLALELNIPKSFLAKILQTLAKDNLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSV---LRKA 114
           +GG  L +   Q +I ++V + E +   V EC       CP     +C L  +   L+  
Sbjct: 60  KGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGV---CPNNKEENCTLMPMLVNLQNK 116

Query: 115 LNAFFDVLT 123
           ++ F D LT
Sbjct: 117 VDEFLDSLT 125


>gi|153814361|ref|ZP_01967029.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
 gi|317500076|ref|ZP_07958311.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087700|ref|ZP_08336626.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848757|gb|EDK25675.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
 gi|316898561|gb|EFV20597.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409681|gb|EGG89117.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 143

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A + +  +   +I  A   IS  +L +IL  L K G++E V G
Sbjct: 1   MLISTKGRYALRVMIDLAQNKESGHVAMKIVAARQGISLKYLERILPVLTKNGLIEGVHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
           + GG RLCR   +  + ++++ TE +     C   +   C     C   G+ +   K +N
Sbjct: 61  KGGGYRLCREPKEYKVGEILRLTEGNLAPVSCLECNAPVCERKDQCHTIGMWTDFHKMIN 120

Query: 117 AFFDVLT 123
            +FD +T
Sbjct: 121 DYFDGIT 127


>gi|225570685|ref|ZP_03779708.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
           15053]
 gi|225160512|gb|EEG73131.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
           15053]
          Length = 181

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A + +  P  IS IA    ISE +L +++  + KAG+V+++RG
Sbjct: 30  MKLSTKGRYGLRAIIDLARYAETEPVSISSIAARQEISERYLEQLVGLMKKAGLVKSIRG 89

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
             GG  L R    I++ DV++A E S    +C A
Sbjct: 90  AGGGYVLARDMKDISVGDVLRALEGSLEPVKCAA 123


>gi|220909499|ref|YP_002484810.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
          7425]
 gi|219866110|gb|ACL46449.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
          7425]
          Length = 145

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++  +Y P  +  IA+   +   +L K+L  + +AG+V ++RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPNYGPTSVQAIAQRQDLPAPYLEKLLIAMRRAGLVHSLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
           +GG +L R   QI++  +++A  ES
Sbjct: 61 AQGGYQLARSPAQISLAQILEAVGES 86


>gi|260892331|ref|YP_003238428.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
 gi|260864472|gb|ACX51578.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
          Length = 154

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R LM  A H    P  +  +A    ISE +L ++   L  AG++ ++RG
Sbjct: 1   MKLSTRIRYGVRALMDIAEHGTAGPVSLKDVARRQGISEQYLEQLALLLKGAGLIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + ++V+       + +C    ++ C     C +  V R+A  AF 
Sbjct: 61  AHGGFVLSRQATEIRLSEIVEILGGPIKLVDCLYDQEV-CTRADCCAVRDVWREANEAFR 119

Query: 120 DVLTQYSIECLV-RNRSSI 137
           +VL   ++  LV R R  +
Sbjct: 120 NVLAAVTLADLVERQRKKL 138


>gi|296447739|ref|ZP_06889655.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254771|gb|EFH01882.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 147

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ + + A     +   +S+IA    I + FL  IL  L   G V +  G+ 
Sbjct: 2   LTKKGKYGLKAMAHLARFAPGHCVPVSEIATTQHIPKKFLDAILCELRNCGYVASKMGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPAD+I I D+++A +       C +        DC  V  C +  V+++A  A
Sbjct: 62  GGYTLARPADEIMIGDIIRALDGPLAPLPCASRSSYRPCDDCSDVARCAVRMVMQEAQQA 121

Query: 118 FFDVL 122
              VL
Sbjct: 122 LSKVL 126


>gi|220916006|ref|YP_002491310.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953860|gb|ACL64244.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 157

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY I +L   A   +       +AE   +    + K+ + L KAG+V + RGR
Sbjct: 2   IRLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L RPAD I+I ++V+A E    +  C    +    C L  +C   +       A 
Sbjct: 62  HGGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L    +  +V   S+  K
Sbjct: 122 QGALRGLPLSSIVLQHSNDPK 142


>gi|302387033|ref|YP_003822855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197661|gb|ADL05232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y IR+++  A HN+     +  IA+   ISE +L  I+  L K  ++ ++RG
Sbjct: 1   MKISTRGRYAIRLMIDLAEHNNGEYITLMDIAKRQEISEKYLEAIVSILSKNNLLVSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116
           + GG +L +  +  TI  +++ TE S     C      +C   P   +  L   L K +N
Sbjct: 61  KGGGYKLAKDPESYTIGSILRLTEGSLAPVACLDGENNNCSRSPECQTIDLWEGLNKLIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 EYLDGVT 127


>gi|75763854|ref|ZP_00743502.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218897792|ref|YP_002446203.1| rrf2 family protein [Bacillus cereus G9842]
 gi|228901306|ref|ZP_04065501.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
 gi|228965709|ref|ZP_04126789.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74488661|gb|EAO52229.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543991|gb|ACK96385.1| rrf2 family protein [Bacillus cereus G9842]
 gi|228793968|gb|EEM41491.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858335|gb|EEN02800.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
          Length = 133

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   + Q+AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVYQLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L +  + I+ LD++ A E    + +C    K  C
Sbjct: 59  SGPKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100


>gi|268679988|ref|YP_003304419.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618019|gb|ACZ12384.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 135

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+  A  N  P  +  ++    +S+ FL KILQ L K  I+ + +G 
Sbjct: 1   MLLTKASEYALLSLIIIAQKN-TPQDVDTLSTQLGLSKSFLAKILQSLAKEEILSSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRK---A 114
            GG  L +  ++IT+  VV+ A ++   V EC  S +  CP     +C +  VL K    
Sbjct: 60  HGGFMLAKKPEEITLKMVVECAEKKQTVVFECSPSTQ-KCPGGKGDNCRVWPVLNKLQSK 118

Query: 115 LNAFFDVLTQYSI 127
           ++ F D +T + I
Sbjct: 119 IDLFLDTMTLHDI 131


>gi|291533964|emb|CBL07077.1| rrf2 family protein (putative transcriptional regulator) [Megamonas
           hypermegale ART12/1]
          Length = 135

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR+++  A  +        I+    I + ++ KI + LV A ++E   G 
Sbjct: 1   MQLNITTDYAIRIILALANRDGEVVSSKDISMTMKIPQKYVLKITRSLVAAELIERRSGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG  L +  ++I++L++VK  E + +V  C           V +C +  +     N   
Sbjct: 61  YGGFLLAKKPEEISLLEIVKVMEPTMYVNRCLEEDNYCSRDAVDNCSIRKIYTNFQNIIE 120

Query: 120 DVLTQYSIECLVRNR 134
           +  ++ +I+ L+ N+
Sbjct: 121 EKFSEITIKTLIDNK 135


>gi|238922731|ref|YP_002936244.1| hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
 gi|238874403|gb|ACR74110.1| Hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
 gi|291526518|emb|CBK92105.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           DSM 17629]
 gi|291527007|emb|CBK92593.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           M104/1]
          Length = 144

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++M  A +N   P  +  +A+   IS+ +L +I+  L KAG V +VRG
Sbjct: 1   MKISTKGRYALRLMMDLAENNTGSPISLKDVAKRQDISDKYLEQIISILNKAGYVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L       T+  +++ TE S     C    +I C     C  + V +K  +A  
Sbjct: 61  AQGGYMLKMEPQNYTVGMILRQTEGSLAPVACIEDDEIVCDRQQQCVTSIVYKKINDAIS 120

Query: 120 DVLTQYSIECLV 131
            V+   +++ LV
Sbjct: 121 GVVDNITLQDLV 132


>gi|227356227|ref|ZP_03840616.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           ATCC 29906]
 gi|227163691|gb|EEI48607.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           ATCC 29906]
          Length = 164

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGREAGQIFVAQVISAVDESIDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRN 133
             L+  S+E LV N
Sbjct: 120 SFLSSISLEELVNN 133


>gi|238018522|ref|ZP_04598948.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC
          17748]
 gi|269798637|ref|YP_003312537.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Veillonella parvula DSM 2008]
 gi|313894420|ref|ZP_07827985.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
          oral taxon 158 str. F0412]
 gi|237864993|gb|EEP66283.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC
          17748]
 gi|269095266|gb|ACZ25257.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
          DSM 2008]
 gi|313441244|gb|EFR59671.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
          oral taxon 158 str. F0412]
          Length = 149

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y + VL+  A    D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1  MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
          + GG RL +   + TI++++ ATEES  +
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89


>gi|260467181|ref|ZP_05813358.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259029034|gb|EEW30333.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 149

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       +  IA    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLARMPAGQLAFVGDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPAD+I I  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPADEIEIGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSI 127
             +VL Q S+
Sbjct: 121 IAEVLDQRSL 130


>gi|313672403|ref|YP_004050514.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939159|gb|ADR18351.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  T ++ Y I  L+Y +  N  P   S+I+ +  I + FL   L  L   GI+++ +G 
Sbjct: 1  MQTTAQSIYAIYALVYISYRNK-PVNPSEISNSSSIPKRFLEITLNKLKHHGILKSKKGP 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L +P ++I++ D++ ATE +  + +C
Sbjct: 60 NGGFILSKPPEKISLYDILSATESNLSLFDC 90


>gi|300114135|ref|YP_003760710.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus
          watsonii C-113]
 gi|299540072|gb|ADJ28389.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus
          watsonii C-113]
          Length = 166

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +  P  ++ I+    IS  +L ++   L K G+V + RG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL R A +I+I+DV+ A +E+     C
Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRC 92


>gi|326693155|ref|ZP_08230160.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773]
          Length = 165

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 16/149 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+   +  D+ P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1   MKMSSAVEQSLVVLVMLELQKDHAPVKSYLLSDRLQVSESYLKKTMRKLVVAGIVDAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATE-------ESFFVAECFASHKIDCPL-----VGSCGL 107
           + GG +L RP   IT+LDV +A E        +      F + K D P+     V +  +
Sbjct: 61  KEGGFKLARPIANITLLDVYQAIEGDGSFIHSTQLADRIFLNQKSDKPVEDVQEVLNVTI 120

Query: 108 TSVL---RKALNAFFDVLTQYSIECLVRN 133
           T VL    +A   F   L  Y+I  L+++
Sbjct: 121 TDVLTIFSEAEQDFKKRLKSYTIANLLQH 149


>gi|282855787|ref|ZP_06265093.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
 gi|282586419|gb|EFB91681.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
          Length = 142

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +RVL+  A H   DY P R   IAE   ISE +L  IL+ LV+  ++  +
Sbjct: 1   MLVSTKGRYALRVLIDLAEHQSGDYVPLR--AIAERQQISEKYLEAILKSLVRDKVLAGM 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG +L    + +T+  +++ TE S     C A     C   G C    + R+  + 
Sbjct: 59  RGKGGGYKLAVAPEALTVGRILRLTEPSLATVSCLAGRGEKCGRRGECRTLPMWRELDSM 118

Query: 118 FFDVLTQYSIECLVRNRSS 136
               L    +  L++   S
Sbjct: 119 ILAYLDGRKLADLIKKDGS 137


>gi|223044133|ref|ZP_03614172.1| Rrf2 family protein [Staphylococcus capitis SK14]
 gi|314933791|ref|ZP_07841156.1| Rrf2 family protein [Staphylococcus caprae C87]
 gi|222442527|gb|EEE48633.1| Rrf2 family protein [Staphylococcus capitis SK14]
 gi|313653941|gb|EFS17698.1| Rrf2 family protein [Staphylococcus caprae C87]
          Length = 140

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PAD+IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESE 96


>gi|240949678|ref|ZP_04754013.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240295936|gb|EER46612.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 150

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  AIH  + P  ++ IA+   IS  +L ++   L + GIV +VRG
Sbjct: 1   MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +    I++  ++ A  E+  V +C  S   +C     C LT  L + L    
Sbjct: 61  PGGGYKLEKSPKDISVGMIIAAVNENVDVTKCKGS--GNCRKDSKC-LTHTLWERLEEQI 117

Query: 120 DV-LTQYSIECLVRNRSS 136
            V L   S+E LV+  S 
Sbjct: 118 GVFLNTVSLEDLVKENSD 135


>gi|163784477|ref|ZP_02179349.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880255|gb|EDP73887.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 143

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 10  GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            IR ++Y A      +    I +IAE   +S  FL KIL  LVK   +E+ RG  GGV+L
Sbjct: 9   AIRAMIYIAKKQKKSDSFISIKEIAENLNLSFYFLSKILHKLVKDRFLESYRGPNGGVKL 68

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
            RP + I++ D++ + + +    +C    K +C     C +
Sbjct: 69  ARPMENISLYDIILSIDGNNVFTQCILGFK-ECSDTKPCAV 108


>gi|296106185|ref|YP_003617885.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295648086|gb|ADG23933.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 139

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           ++Y A H+        IA    ++   + KIL+ L  AG++ +VRG  GG RL RPA +I
Sbjct: 1   MVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVSGGYRLQRPAAEI 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           ++  ++ A EE     EC +    DC L G C +    R   +A    L   S+E L +
Sbjct: 61  SVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETALDSVSLEALAK 118


>gi|256391950|ref|YP_003113514.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Catenulispora acidiphila DSM 44928]
 gi|256358176|gb|ACU71673.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
          acidiphila DSM 44928]
          Length = 145

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ RTDY +RVL+  A  +  P     IAE+  I   FL  +++ L  AG+V + RG 
Sbjct: 1  MRVSARTDYAVRVLIELAAADSRPVTCEAIAESQQIPYRFLKAVVRDLRVAGLVRSQRGC 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
           GG  + R A +I + DVV+A +    
Sbjct: 61 EGGYWIGREAAEIALADVVRAVDGELL 87


>gi|56708063|ref|YP_169959.1| hypothetical protein FTT_0970 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670534|ref|YP_667091.1| hypothetical protein FTF0970 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301877|ref|YP_001121846.1| rrf2 family transcriptional regulator [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931697|ref|YP_001891681.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457151|ref|ZP_03665624.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370550|ref|ZP_04986555.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874866|ref|ZP_05247576.1| cysteine desulfurase activator complex subunit sufB [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604555|emb|CAG45603.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320867|emb|CAL08986.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049654|gb|ABO46725.1| transcriptional regulator, rrf2 family [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151568793|gb|EDN34447.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712606|gb|ACD30903.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840865|gb|EET19301.1| cysteine desulfurase activator complex subunit sufB [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159259|gb|ADA78650.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 136

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++IAE   ++   + K+L  L  A IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    
Sbjct: 62  EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|145638712|ref|ZP_01794321.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae
          PittII]
 gi|145272307|gb|EDK12215.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae
          PittII]
 gi|309750202|gb|ADO80186.1| transcriptional regulator IscR [Haemophilus influenzae R2866]
          Length = 150

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNTDGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|260912948|ref|ZP_05919433.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
           dagmatis ATCC 43325]
 gi|260632938|gb|EEX51104.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
           dagmatis ATCC 43325]
          Length = 154

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHSKRGPVSLSDISERQHISLSYLEQLFAKLRRYGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P ++I++  V+ A  E+  V  C    + DC     C   S+ ++      
Sbjct: 61  PGGGYQLGLPTNEISVGMVINAVNENIDVTRCHG--RGDCQEGIECLTHSLWKELSQRIE 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  LV
Sbjct: 119 DFLNEITLAELV 130


>gi|239944195|ref|ZP_04696132.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 148

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD  +RVLM  A+    + P    ++A    +      K++  L   G+++  R
Sbjct: 1   MRLTRFTDVALRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC       CPL  +C L   LR A +AF
Sbjct: 60  GRGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAF 117

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  LV
Sbjct: 118 YAALDPITVADLV 130


>gi|197285716|ref|YP_002151588.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194683203|emb|CAR43856.1| putative iron-sulfur cluster transcriptional regulator [Proteus
           mirabilis HI4320]
          Length = 164

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGREAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRN 133
             L+  S+E LV N
Sbjct: 120 SFLSSISLEELVNN 133


>gi|328541946|ref|YP_004302055.1| HTH-type transcriptional regulator NsrR [polymorphum gilvum
           SL003B-26A1]
 gi|326411696|gb|ADZ68759.1| HTH-type transcriptional regulator NsrR [Polymorphum gilvum
           SL003B-26A1]
          Length = 132

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I  IA+ C      +  ++Q L K G +++V+GR GG+ L R   +I++ ++V   E   
Sbjct: 3   IDTIADRCRTGRPQVVHVVQILRKHGYIKSVQGRNGGIWLDRNPAEISLAEIVHLFESDL 62

Query: 87  FVAECFASHKI-DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
            + ECF   +   C L  +CG    L +AL AF   L   +I  L    +++
Sbjct: 63  NLVECFEPKRTCRCTLQAACGFRRTLDRALQAFLAELEATTIADLAGETAAL 114


>gi|256822724|ref|YP_003146687.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis
          DSM 16069]
 gi|256796263|gb|ACV26919.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
          DSM 16069]
          Length = 155

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  ++  A+H+ + P  +++++    IS  +L ++   L KA +V++VRG
Sbjct: 1  MKLSTKGRYAVTAMLDLALHSGNGPITLAEVSSRQDISLSYLEQLFSKLRKASLVDSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L RP+ QI+I +VV A  E     +C
Sbjct: 61 PGGGYELKRPSSQISIAEVVLAVNEPISATKC 92


>gi|149927875|ref|ZP_01916126.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
 gi|149823497|gb|EDM82728.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
          Length = 163

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALQQDTGPVSLAGISQRQNISLSYLEQLFSKLRRHELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  + R   ++++ DV+ A +E     +C    K +C   G C +T  L  +LN   
Sbjct: 61  PGGGYHIARALKEVSVADVILAVDEPLDATQCGG--KENCTDEGQC-MTHDLWSSLNTKM 117

Query: 119 FDVLTQYSIECLV 131
            + L   +++CLV
Sbjct: 118 LEYLGSVTLQCLV 130


>gi|226328026|ref|ZP_03803544.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
 gi|225203730|gb|EEG86084.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
          Length = 164

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRN 133
             L+  S+E LV N
Sbjct: 120 SFLSSISLEELVNN 133


>gi|258511997|ref|YP_003185431.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478723|gb|ACV59042.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 136

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 11/137 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +L+  A   +D P  +  IAE   +SE +L +++ PL   G V ++RG
Sbjct: 1   MKISTKGRYGLMLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I I DV+ A E    + +     +ID       GL  +  +   A  
Sbjct: 61  AYGGYVLARHPREIVIEDVLLALEGPITIVD----EEID------DGLQVLWDRLREAIH 110

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL+  +++ LV  R  
Sbjct: 111 DVLSSMTLQDLVELRQG 127


>gi|261820558|ref|YP_003258664.1| IscR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604571|gb|ACX87057.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           wasabiae WPP163]
          Length = 164

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   +++ LV N+
Sbjct: 119 DFLNNITLDELVNNK 133


>gi|253689401|ref|YP_003018591.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259493875|sp|C6DBJ2|ISCR_PECCP RecName: Full=HTH-type transcriptional regulator iscR
 gi|251755979|gb|ACT14055.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 164

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   +++ LV N+
Sbjct: 119 DFLNNITLDELVNNK 133


>gi|226308877|ref|YP_002768837.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187994|dbj|BAH36098.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 154

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +     + P   +++AE   +S+ +L K L+ L  AG+V    GR GG  L
Sbjct: 6   GVEWSLHCCVVLSQAEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGRDGGYVL 65

Query: 67  CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFD 120
            R  ++IT+LDVV+A   TE +F   E      +  P      +CG+  V+  A  A+  
Sbjct: 66  TRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQCRSACGIAKVMADAEKAWRA 125

Query: 121 VLTQYSIECLVR--NRSSIKKIFN 142
            L+  +I  L    +  +++KI  
Sbjct: 126 SLSGVTIADLAATLDLPALRKILT 149


>gi|328552169|gb|AEB22661.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
          Length = 167

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
          M  +   +Y +  L+Y     D P++    I  +AE   +SE FL K+   L KAGIV +
Sbjct: 1  MQYSAGVEYALHCLVYLI---DVPSKKSVGIRDLAEFQGLSETFLSKVFGKLSKAGIVNS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          V G +GG RL +  + I+  DV++A E    + +C
Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|172041371|ref|YP_001801085.1| Rrf2 family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852675|emb|CAQ05651.1| putative transcriptional regulator (Rrf2 family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 164

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M LT   D G+RVLM           +  P RI  +A+    S   + K++  L   G++
Sbjct: 1   MQLTTFADLGLRVLMVLGATQAVDAADRSPVRIQDLADQLNASRNHVAKVVNMLTSDGLL 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRK 113
           E++RGR GGV +     + ++  +++  E +  V +C  +  + CPL    C L   L  
Sbjct: 61  ESIRGRYGGVHITEQGMRASVGALLRQLEGNREVVDCEGA--LQCPLARHDCALRRRLAA 118

Query: 114 ALNAFFDVLTQYSIECLV 131
           A  AFF  L   ++  LV
Sbjct: 119 AQEAFFATLDGDTVGDLV 136


>gi|89054908|ref|YP_510359.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864457|gb|ABD55334.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 141

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R      +L   A+  D P     IA+    +   + KI+  L ++GI  +  G 
Sbjct: 1   MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R  +QIT+LDV +A +      E FAS   +CP   SC + S +   L+    
Sbjct: 61  KGGTHLARAPEQITLLDVYRAVDTQ----EIFASP--NCPPDASCPIGSQIGPVLDEVKA 114

Query: 121 VLTQ 124
             TQ
Sbjct: 115 KATQ 118


>gi|300717962|ref|YP_003742765.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063798|emb|CAX60918.1| Transcriptional regulator [Erwinia billingiae Eb661]
          Length = 165

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + +D I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKSSDAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117

Query: 119 FDVLTQYSIECLVRNR 134
            D L   S+  LV N+
Sbjct: 118 SDFLNNISLAELVNNQ 133


>gi|225375164|ref|ZP_03752385.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
           16841]
 gi|225212990|gb|EEG95344.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
           16841]
          Length = 163

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++N   P  +  IA    IS+ +L +I+  L KA  V+++RG
Sbjct: 21  MKVSTKGRYALRLMLDLAVNNTGEPISLKDIARRQGISDKYLEQIISVLNKAKYVKSIRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  ++ TI  +++ TE S     C       C  +  C    V +K   A  
Sbjct: 81  AQGGYILTKKPEEYTIGMILRLTEGSLAPVACVEEENT-CEKIHDCATILVWQKMNEAIN 139

Query: 120 DVLTQYSIECLV 131
           DV+   +++ LV
Sbjct: 140 DVVDHMTLQDLV 151


>gi|251794316|ref|YP_003009047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247541942|gb|ACS98960.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  +   +Y +  L+Y  I N+    I ++A    I E +L KI   L KAGIV +V G 
Sbjct: 1   MQYSVGVEYALHCLVYL-IPNESTIGIKELAFFQGIPETYLSKIFTKLTKAGIVSSVPGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCP----LVGSCGLTS 109
           +GG +L R  D I+  DVV+A E    + +C       +     DC       GSC +  
Sbjct: 60  KGGFKLARVPDDISFWDVVEAVEGKKPIFQCQNIKDKGYLYRNRDCSDCAASTGSCSINL 119

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +A     + L    +  L
Sbjct: 120 VMLEAEETMQNYLRNKKLSWL 140


>gi|332969189|gb|EGK08221.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           kingae ATCC 23330]
          Length = 149

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 4/121 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++   +  +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQSHAVKLNAISERQQISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + ADQI I  ++ A E+      C  S K +C     C LT  L + LN   
Sbjct: 61  PGGGYVLGKSADQINISQIIAAAEDRLDATLC--SGKANCQSGAPC-LTHNLWENLNHTI 117

Query: 120 D 120
           D
Sbjct: 118 D 118


>gi|295106061|emb|CBL03604.1| transcriptional regulator, BadM/Rrf2 family [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 136

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++  A    +  P  + Q A    +S  +L ++   LVKAGI++++R
Sbjct: 1   MMISTKGRYALRLMIDIASREQDGSPVTMRQAAAREDLSVKYLEQLGGALVKAGILKSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KAL 115
           G  GG  L +PA+ IT  DV++ATE       C       CP    C   +  R   + +
Sbjct: 61  GVSGGYLLAKPAEDITAGDVLRATEGGCAPVACLEDGAEACPRRSECVAVNFWRGLDRTI 120

Query: 116 NAFFDVLT 123
             + D +T
Sbjct: 121 EGYVDGVT 128


>gi|256819570|ref|YP_003140849.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
           ochracea DSM 7271]
 gi|256581153|gb|ACU92288.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
           ochracea DSM 7271]
          Length = 145

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AIH+   +RI+   +AEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q  ++ VV+   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120

Query: 121 VLTQYSIECLVR 132
            L++ SI    +
Sbjct: 121 ELSENSIASFAQ 132


>gi|302386870|ref|YP_003822692.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197498|gb|ADL05069.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 146

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 67/142 (47%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +  Y +R+++  A+H     +I+Q+AE   IS+ +L +I+  L +AG V++ RG 
Sbjct: 1   MKFSTKGRYALRMMLEFALHPGECTKINQVAERQEISDKYLEQIVTILSRAGYVKSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +   + T+  +++  E S     C       C    +C    V ++  +A   
Sbjct: 61  QGGYYLTKDPSEYTVGMILRLAEGSLVPVTCLEDEVNPCSRSQNCATLMVWKELDHAISH 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           V+   ++  LV  +  +    N
Sbjct: 121 VVDGITLADLVEEQKRLDGQAN 142


>gi|317055144|ref|YP_004103611.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315447413|gb|ADU20977.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 144

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +R++   A H D    P ++  IAE   IS+ +L +I+  L ++G V +V
Sbjct: 1   MKISTKGRYALRLMTDLAEHKDDGYIPIKV--IAERQNISDKYLEQIISILSRSGYVRSV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---A 114
           RG  GG  L  P ++ T+  +++ TE S     C  + +  CP   +C    +  K   A
Sbjct: 59  RGAGGGYTLAYPPEKYTVGMILRLTEGSLAPVACLETDENLCPRAKACPTLFIWEKLYSA 118

Query: 115 LNAFFDVLT 123
           +N   D +T
Sbjct: 119 INYVVDGIT 127


>gi|304320316|ref|YP_003853959.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
           HTCC2503]
 gi|303299218|gb|ADM08817.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
           HTCC2503]
          Length = 174

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 3   LTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++++  Y +R  VL+  A   D    I+ I+E   I + FL +IL  L + G++++ RG+
Sbjct: 23  ISQKAKYALRAMVLLARAHAEDEALIIADISERQNIPKKFLEQILLDLKRHGLLDSRRGK 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116
            GG  L RPADQIT  +V++  E       C +        DC    SC +  V  +  +
Sbjct: 83  NGGYMLLRPADQITFGEVLRIIEGPIAPLPCLSKMAYRKCEDCDGEKSCEIRRVFAEVAD 142

Query: 117 AFFDVLTQYSI 127
           A   VL + +I
Sbjct: 143 ATRAVLDKTTI 153


>gi|257468462|ref|ZP_05632556.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium
          ulcerans ATCC 49185]
 gi|317062725|ref|ZP_07927210.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
 gi|313688401|gb|EFS25236.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
          Length = 136

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+ +DY I++++Y + +         +I+EA  +S  F  KIL+ L K  +VE+ RG
Sbjct: 1  MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEQMSMKFALKILRRLCKVKLVESFRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
           +GG +L + A+ I++  V++  +   F+
Sbjct: 61 IKGGYKLKKSANDISLRSVIEVIQGDLFI 89


>gi|153812308|ref|ZP_01964976.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
 gi|149831715|gb|EDM86802.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
          Length = 147

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M   K+T YG+  L+  A   +  P  +  IAE   IS  FL  I     + GIV++V+G
Sbjct: 1  MKFCKKTRYGLTALVDLAAQPSTTPVALKTIAERNDISLQFLEHIFASFRRTGIVKSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L + AD+IT+  VV+  E S+ + +
Sbjct: 61 SQGGYNLAKAADEITVASVVEVLEGSYHLED 91


>gi|310829310|ref|YP_003961667.1| RRF2 family protein [Eubacterium limosum KIST612]
 gi|308741044|gb|ADO38704.1| RRF2 family protein [Eubacterium limosum KIST612]
          Length = 135

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   A  + + P  I +IAE    S+ ++ ++   L KAG++ ++RG
Sbjct: 1   MRLSTKGRYGVLAMYELACRYGNGPVSIKEIAEKQNFSDSYMEQLFSTLKKAGLIVSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSC---GLTSVLRKAL 115
            +GG  L R    I++ ++++A E    +A+C        C   G C   GL   +R ++
Sbjct: 61  AKGGYILSREPRDISVGEIIRALEGPIELADCVGGPEGYVCRKSGECVTRGLWMEIRDSI 120

Query: 116 NAFFD 120
           N   D
Sbjct: 121 NNIID 125


>gi|291447666|ref|ZP_06587056.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350613|gb|EFE77517.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 156

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD  +RVLM  A+    + P    ++A    +      K++  L   G+++  R
Sbjct: 9   MRLTRFTDVALRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARR 67

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC       CPL  +C L   LR A +AF
Sbjct: 68  GRGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAF 125

Query: 119 FDVLTQYSIECLV 131
           +  L   ++  LV
Sbjct: 126 YAALDPITVADLV 138


>gi|153006770|ref|YP_001381095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030343|gb|ABS28111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +Y +  L+  A+ ++ P  +  +A    + E FL K+   L KAG+VE   G RGG  L
Sbjct: 10  AEYALHSLLILAVRSE-PVSVRDLARFQDLPERFLAKLFTRLQKAGLVEATEGVRGGFAL 68

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
            RPA +I + DV++A + +  + EC A  +  C L G+
Sbjct: 69  ARPAARIAVRDVLEAVDPNRTLFEC-AEIRRHCALFGA 105


>gi|296536722|ref|ZP_06898782.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296262953|gb|EFH09518.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 183

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY + VL               +A A  I+E  + K+L+ L  A +VE +RG 
Sbjct: 26  LRLSKLTDYAVVVLARLEAEGGV-QTAPGLAAATGIAEPTVSKVLKHLGHASLVEGLRGA 84

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP   I + DV+ A +    +  C       C   G C +         A   
Sbjct: 85  RGGYRLARPLSSIPLSDVICAIDGPIALTACVDGATGGCEAEGLCPVRGRWDPVNEAIRA 144

Query: 121 VLTQYSIECLVRNRSS 136
            L+  S+  +   RS+
Sbjct: 145 ALSAISVADIAAPRSA 160


>gi|237733505|ref|ZP_04563986.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383338|gb|EEO33429.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 134

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          MHL   TDY +R+++Y +   +   R+S  ++++   I + ++FKIL+ L ++ +V +  
Sbjct: 1  MHLKMSTDYAVRIIIYLS---EKQCRVSSKELSKKLVIPQNYIFKILKILQESNLVNSYS 57

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
          G  GG  L +    IT+ D+++ATE +  +  C  +
Sbjct: 58 GSDGGFILKKEPKDITMFDIMQATETTTRINRCLEN 93


>gi|90417479|ref|ZP_01225402.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
 gi|90330720|gb|EAS45999.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
          Length = 158

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++   IH +D P  +S+I++   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLTIHCDDKPVSLSEISQRQSISLSYLEQLFSKLRQAELVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R ++ + I +++ A  ES     C    K DC     C   S+  +  +   
Sbjct: 61  PGGGYRLGRSSETVFIAEIIDAVNESVDSTNCQG--KGDCQGGEICLTHSLWDQLSHEIH 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   S+  LV  R
Sbjct: 119 NFLNAISLADLVARR 133


>gi|322382961|ref|ZP_08056793.1| transcriptional regulator-like protein of cysteine biosynthesis
          [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153081|gb|EFX45539.1| transcriptional regulator-like protein of cysteine biosynthesis
          [Paenibacillus larvae subsp. larvae B-3650]
          Length = 126

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           A + + P  +  IAE   +SE +L +++ PL  AG+V+++RG  GG  L RPA+QIT  
Sbjct: 5  AARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTG 64

Query: 77 DVVKATE 83
           +++  E
Sbjct: 65 QIIRVLE 71


>gi|282882782|ref|ZP_06291389.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
           315-B]
 gi|300813432|ref|ZP_07093777.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|281297443|gb|EFA89932.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
           315-B]
 gi|300512449|gb|EFK39604.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 131

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG+ + MY    N    P  +  IA+   +SE +L ++   L K G+V +VR
Sbjct: 1   MKLSTKGRYGL-MAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L +  ++I I D++ A E    ++ C  + +++C  +  C    +L++  +  
Sbjct: 60  GAGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRM 119

Query: 119 FDVLTQYSI 127
            +V+   ++
Sbjct: 120 EEVMDSLTL 128


>gi|78223114|ref|YP_384861.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194369|gb|ABB32136.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 153

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ L+Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKALLYLAREYDRGPILIADLAREERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L  P  +IT+  V++  E       C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAHPPREITMGKVIRTLEGPLAPVPCVSETAYARCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   ++  ++
Sbjct: 122 MAQILDNATLAAVL 135


>gi|83310947|ref|YP_421211.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945788|dbj|BAE50652.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 149

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ +++ A H    P  I+ +AEA  I + FL  IL  +   G++ + +G+ 
Sbjct: 2   LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA++I + D+V+  +       C +        DC    +C + +V++   +A
Sbjct: 62  GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCLDEAACTVRAVMQDVRDA 121

Query: 118 FFDVLTQYSI 127
              +L   S+
Sbjct: 122 IAAILDNTSL 131


>gi|153003770|ref|YP_001378095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027343|gb|ABS25111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 155

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDY I +L + A  +       ++A    +    + K+ + L KAG+V + RGR
Sbjct: 2   IRMSKLTDYAIVLLAHLA-RSGRTLAAQELAARSGVPLPTVSKLCKELSKAGLVVSHRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA+ I++ ++V+A E    + +C +  K+ C +  +C           A FD
Sbjct: 61  HGGYGLARPAELISVAEIVEALEGPIALTDCTSPAKVACGIEATC--------PAKASFD 112

Query: 121 VLTQ 124
            +T+
Sbjct: 113 PVTR 116


>gi|253988842|ref|YP_003040198.1| DNA-binding transcriptional regulator IscR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780292|emb|CAQ83453.1| hth-type transcriptional regulator iscr [Photorhabdus asymbiotica]
          Length = 164

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + +V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAGKIVVAEVIFAVDESVDATRCQG--KEGCQGGDRCLTHALWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
             L+  S++ LV N+
Sbjct: 119 SFLSSISLKELVNNQ 133


>gi|62262806|gb|AAX78104.1| unknown protein [synthetic construct]
          Length = 171

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++IAE   ++   + K+L  L  A IV + RG 
Sbjct: 28  LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 87

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    
Sbjct: 88  EGGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 145

Query: 121 VLTQYSIECLVRNRS 135
           +L++ SI  +V N+ 
Sbjct: 146 LLSKTSIYDIVNNKD 160


>gi|307824416|ref|ZP_07654641.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
 gi|307734400|gb|EFO05252.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
          Length = 157

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A H+   P  ++ IA    IS  +L ++   L +AG+V+ VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAFHSQIKPVTLTDIAARQTISLSYLEQLFARLRRAGMVKGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
             GG +LCR    I I D++ A  E     +C    + +C    +C       GL+  +R
Sbjct: 61  PGGGYKLCRKTSDINIADIIAAVNEPLDSTKCGG--EANCQKDQACLTHDLWMGLSEQIR 118

Query: 113 KALN--AFFDVLTQYSI-ECLVRNRSSIKKIFN 142
             L   +  D+L +  + E  +R     +++  
Sbjct: 119 DYLKGISLADLLEKNQVQEVAIRQHHDAQQVIE 151


>gi|40063431|gb|AAR38242.1| rrf2 family protein [uncultured marine bacterium 580]
          Length = 159

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 8/145 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  + P ++S+I++   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTTKGRFAVTAMLDLALNEKNMPIKLSEISQRQSISLSYLEQLFGKLRKQGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  + +  D I++ +++ + +E     +C    K +C     C +T  L   LN+  
Sbjct: 61  PGGGYLVAKNHDNISVKNIISSVDEQIDATQCGG--KENCNEGHQC-ITHNLWTTLNSKI 117

Query: 119 FDVLTQYSIECLV---RNRSSIKKI 140
            D L   +++ LV   RN+S  + I
Sbjct: 118 LDYLESTTLDELVKTQRNKSENQSI 142


>gi|50122160|ref|YP_051327.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644317|sp|Q6D258|ISCR_ERWCT RecName: Full=HTH-type transcriptional regulator iscR
 gi|49612686|emb|CAG76136.1| putative transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 164

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGRES--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   +++ LV N+
Sbjct: 119 DFLNNITLDELVNNK 133


>gi|331698727|ref|YP_004334966.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953416|gb|AEA27113.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 160

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAE--- 90
           +S  +L K LQ L +AG+V +V+G+ GG +L R    IT+LDVV+A +  +S FV     
Sbjct: 35  VSPTYLAKQLQALSRAGLVRSVQGQAGGYQLTRDPQAITVLDVVEAVDGRQSAFVCTEIR 94

Query: 91  ---CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
               FA+    C +   CG+ SV+  A  A+ D L   +I  L 
Sbjct: 95  QRGPFAATPEQCRV--PCGIASVMYDADRAWRDSLRATTIADLA 136


>gi|223040640|ref|ZP_03610910.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
          RM3267]
 gi|222878098|gb|EEF13209.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
          RM3267]
          Length = 134

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LTK ++Y +  L+Y A   D P+ +  ++    IS+ FL KILQ L + GI+ + +G 
Sbjct: 1  MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILISFKGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHK 96
           GG  L +    I+I  V+++ E+    V EC  S +
Sbjct: 60 NGGFMLAQKPGDISIKRVIESAEKRKMAVFECSISQE 96


>gi|157738497|ref|YP_001491181.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           RM4018]
 gi|315635366|ref|ZP_07890633.1| transcriptional regulator superfamily protein [Arcobacter butzleri
           JV22]
 gi|157700351|gb|ABV68511.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
           RM4018]
 gi|315480351|gb|EFU71017.1| transcriptional regulator superfamily protein [Arcobacter butzleri
           JV22]
          Length = 152

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K+TDY +R L   A   D    I +++E+  +   FL  I+  + +AG V+++ GR
Sbjct: 1   MKVSKKTDYALRALFAIA-EADNLISIRELSESVDVPRRFLENIMLEMNRAGWVKSIPGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L + +D+IT+ +V++  E    +  C + S+   C   G C    V     N   
Sbjct: 60  YGGYVLAKGSDEITLGEVIRYFEGMIAMISCVSVSNYEPCSQEGKCYFRRVFLNIRNLTA 119

Query: 120 DVLTQYSI 127
            +L + +I
Sbjct: 120 QILDKTTI 127


>gi|325261733|ref|ZP_08128471.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324033187|gb|EGB94464.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 128

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT+  DY IR+L   ++ +   + +  I +A  + E F +KI++ L KAG V   RG 
Sbjct: 1  MLLTRENDYAIRILR--SLKDKEKHTVKDICQAEEVPEAFAYKIIRKLQKAGFVAVERGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG RL      +T+ DVV A +    +  C 
Sbjct: 59 AGGCRLGTDLKSLTLYDVVTAVDAEPLIMPCM 90


>gi|282849798|ref|ZP_06259182.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|282580735|gb|EFB86134.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
          Length = 149

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y + VL+  A    D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1  MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAAKLVDSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
          + GG RL +   + TI++++ ATEES  +
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89


>gi|299822827|ref|ZP_07054713.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816356|gb|EFI83594.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 148

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ V +  A    + P  +  IAEA  +SE +L +++ PL  AGIV+++RG
Sbjct: 8   MKITTKGRYGLTVTLELARQVGNGPISLRSIAEAKGLSEHYLEQLIGPLRNAGIVKSIRG 67

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
             GG  L     +IT  DV++  E    + E   + +
Sbjct: 68  AYGGYVLNHDPSEITAGDVIRTLEGPIVLVEGMENEE 104


>gi|75911214|ref|YP_325510.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75704939|gb|ABA24615.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
           ATCC 29413]
          Length = 156

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +S I+    I E +L +IL  L +AG+V++ RG RGG  L R   Q+T+L+VV   +
Sbjct: 39  PTTMSDISAKHPIPERYLEQILSSLRRAGVVQSQRGSRGGFVLTREPRQLTLLEVVIMLD 98

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
                 E  +   ++  LV  C    + ++A  A  ++L+QY+I+ L   R +
Sbjct: 99  GEQKEKESPSEENLEKSLV--C---EIWQQADVAAQNILSQYTIQDLCDQREA 146


>gi|291303191|ref|YP_003514469.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
          nassauensis DSM 44728]
 gi|290572411|gb|ADD45376.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 160

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
          +Q+AE   +   +L K LQ LVKAGI+    G RGG RL +PA ++T+L +V+A + +  
Sbjct: 32 AQLAEYYDLPPAYLAKQLQVLVKAGILAATTGARGGFRLAKPAAEVTLLAIVEAVDGTAS 91

Query: 88 VAEC 91
            EC
Sbjct: 92 PYEC 95


>gi|284046839|ref|YP_003397179.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Conexibacter woesei DSM 14684]
 gi|283951060|gb|ADB53804.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
          DSM 14684]
          Length = 157

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + + +YG+R+++       + P  +  IA A  +   +L +++  L KA +V + RG
Sbjct: 1  MIFSSKAEYGVRLMVELGRQGAEQPISLKAIAAAEQLPLAYLEQVVARLKKAELVRSARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            GG  L RPA++IT+ +VV A E +    ECF +   +
Sbjct: 61 AHGGYWLARPAEEITMDEVVLALEGAIAPMECFVNEHTE 99


>gi|145636353|ref|ZP_01792022.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae
          PittHH]
 gi|148827518|ref|YP_001292271.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae
          PittGG]
 gi|319775754|ref|YP_004138242.1| transcriptional regulator [Haemophilus influenzae F3047]
 gi|329123595|ref|ZP_08252155.1| iron-sulfur cluster assembly transcription regulator IscR
          [Haemophilus aegyptius ATCC 11116]
 gi|145270518|gb|EDK10452.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae
          PittHH]
 gi|148718760|gb|ABQ99887.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae
          PittGG]
 gi|301169081|emb|CBW28678.1| DNA-binding transcriptional repressor [Haemophilus influenzae
          10810]
 gi|317450345|emb|CBY86561.1| predicted transcriptional regulator [Haemophilus influenzae
          F3047]
 gi|327469794|gb|EGF15259.1| iron-sulfur cluster assembly transcription regulator IscR
          [Haemophilus aegyptius ATCC 11116]
          Length = 150

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|94501139|ref|ZP_01307662.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
           sp. RED65]
 gi|94426715|gb|EAT11700.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
           sp. RED65]
          Length = 160

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH  + P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHGQHKPVSLNDISGRQGISLSYLEQLFAKLRRCDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL R   +I+I  VV A  ES     C    K DC     C    L   L + ++
Sbjct: 61  PGGGYRLSREGSEISIAQVVDAVNESMDATRCRG--KGDCQEGDQCLTHHLWQDLSQQIH 118

Query: 117 AFFDVLTQYSIECLVRNR 134
           AF   L+  SI  LV  +
Sbjct: 119 AF---LSDISIADLVSRK 133


>gi|73662780|ref|YP_301561.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495295|dbj|BAE18616.1| putative transcriptional regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 127

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  +K T+Y +  L++   +N    RI    +A+A  IS  +L KIL  LVK G++    
Sbjct: 1   MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           G +GG +L      +TI +V+   +    + E   +H   CP+
Sbjct: 61  GAKGGYQLSLNWQDVTIYEVITTIDGKQSLFEDSFNHGDSCPI 103


>gi|308172347|ref|YP_003919052.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605211|emb|CBI41582.1| putative transcriptional regulator [Bacillus amyloliquefaciens
          DSM 7]
          Length = 167

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
          M  +   +Y +  L+Y     D P++    I  +AE   +SE FL K+   L KAGIV +
Sbjct: 1  MQYSAGVEYALHCLVYLI---DVPSKKSVGIRDLAEFQGLSESFLSKVFGKLSKAGIVNS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          V G +GG RL +  + I+  DV++A E    + +C
Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|210635349|ref|ZP_03298496.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
 gi|210158434|gb|EEA89405.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
          Length = 160

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +RV++  A H D   RI   QIA    ISE +L  IL  LV+ G++  +R
Sbjct: 15  MLVSTKGRYALRVMVDLAEHRD-EGRIPLRQIAVRQDISEKYLENILSTLVRHGMLSGLR 73

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115
           G+ GG  L R  ++ T+ ++++ TE S     C       C    +C    V   L + +
Sbjct: 74  GKGGGYCLTREPEEFTLGEILRLTEGSLSPVSCLNGPHNTCERAATCRTVRVWTELDRMI 133

Query: 116 NAFFDVLTQYSIEC 129
             + D +T   + C
Sbjct: 134 QEYLDGVTIADLMC 147


>gi|150019861|ref|YP_001312115.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906326|gb|ABR37159.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 137

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++ + +DY  R+++  +    D       ++E   I   FL K+ + L +AGI+++ RG
Sbjct: 1   MNINQESDYAFRIILMLSKEGLDNKLDAKSLSEKGNIPLRFLLKLTRKLTQAGILKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
             GG  + R    IT+ DVV+A +    V  C    K       G C +   L    N  
Sbjct: 61  VNGGYAITREPKDITLKDVVEAIQGPIIVTRCVYDGKACSANKAGHCSIHKALYNIQNTM 120

Query: 119 FDVLTQYSIECL 130
            + L + + + L
Sbjct: 121 INELEKVNFDKL 132


>gi|119718638|ref|YP_925603.1| BadM/Rrf2 family transcriptional regulator [Nocardioides sp. JS614]
 gi|119539299|gb|ABL83916.1| transcriptional regulator, BadM/Rrf2 family [Nocardioides sp.
           JS614]
          Length = 152

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 34/151 (22%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57
           M ++ ++DY +R L+  A   D   R     E   + E+   FL  IL  L +AGIV + 
Sbjct: 1   MRVSAKSDYALRALIEMASRAD--GRAVSAEELGRLQEIPHGFLQAILADLRRAGIVMSQ 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---------- 107
           RG+ GG R+ R A  +++ DV++A               +D PLV   GL          
Sbjct: 59  RGQSGGWRMGRSAADVSVADVIRA---------------VDGPLVSVYGLRPEAVSYNEA 103

Query: 108 TSVLRK----ALNAFFDVLTQYSIECLVRNR 134
             VL+     A ++  DV  Q SI+ L   R
Sbjct: 104 ADVLQHVWIAARHSLRDVFEQVSIQQLADGR 134


>gi|227112705|ref|ZP_03826361.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227329514|ref|ZP_03833538.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 164

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   +++ LV N+
Sbjct: 119 DFLNNITLDELVNNK 133


>gi|16272327|ref|NP_438540.1| hypothetical protein HI0379 [Haemophilus influenzae Rd KW20]
 gi|145634625|ref|ZP_01790334.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae
          PittAA]
 gi|260580558|ref|ZP_05848386.1| iron-sulfur cluster assembly transcription factor IscR
          [Haemophilus influenzae RdAW]
 gi|1175234|sp|P44675|Y379_HAEIN RecName: Full=Putative HTH-type transcriptional regulator HI_0379
 gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|145268170|gb|EDK08165.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae
          PittAA]
 gi|260092900|gb|EEW76835.1| iron-sulfur cluster assembly transcription factor IscR
          [Haemophilus influenzae RdAW]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|330469219|ref|YP_004406962.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328812190|gb|AEB46362.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 1  MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L+ R DY +R +   A         P    QIA A  I   FL  IL  L + GI++ 
Sbjct: 1  MRLSARVDYALRAVTELASVTGAGRGRPVTADQIARAQDIPPKFLESILLQLRRGGIMQA 60

Query: 57 VRGRRGGVRLCRPADQITILDVVK 80
           RG  GG  L RPA++I++ DV++
Sbjct: 61 QRGPEGGYWLARPAEEISLADVIR 84


>gi|68248982|ref|YP_248094.1| hypothetical protein NTHI0499 [Haemophilus influenzae 86-028NP]
 gi|145631834|ref|ZP_01787593.1| predicted transcriptional regulator [Haemophilus influenzae
          R3021]
 gi|145632626|ref|ZP_01788360.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
 gi|145640331|ref|ZP_01795915.1| predicted transcriptional regulator [Haemophilus influenzae
          R3021]
 gi|229844533|ref|ZP_04464673.1| predicted transcriptional regulator [Haemophilus influenzae
          6P18H1]
 gi|229846466|ref|ZP_04466574.1| predicted transcriptional regulator [Haemophilus influenzae
          7P49H1]
 gi|68057181|gb|AAX87434.1| predicted transcriptional regulator [Haemophilus influenzae
          86-028NP]
 gi|144982553|gb|EDJ90107.1| predicted transcriptional regulator [Haemophilus influenzae
          R3021]
 gi|144986821|gb|EDJ93373.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
 gi|145274917|gb|EDK14779.1| predicted transcriptional regulator [Haemophilus influenzae
          22.4-21]
 gi|229810559|gb|EEP46277.1| predicted transcriptional regulator [Haemophilus influenzae
          7P49H1]
 gi|229812782|gb|EEP48471.1| predicted transcriptional regulator [Haemophilus influenzae
          6P18H1]
 gi|309972462|gb|ADO95663.1| transcriptional regulator IscR [Haemophilus influenzae R2846]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|37527164|ref|NP_930508.1| DNA-binding transcriptional regulator IscR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81833923|sp|Q7N223|ISCR_PHOLL RecName: Full=HTH-type transcriptional regulator iscR
 gi|36786598|emb|CAE15658.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 164

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I + +V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREG--CQGGDRCLTHALWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNR 134
             L+  S+E LV N+
Sbjct: 119 GFLSSISLEELVNNQ 133


>gi|210608482|ref|ZP_03287858.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
 gi|210153058|gb|EEA84064.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
          Length = 142

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  Y + +++  A+H+  ++  R+  IA    +SE +L +I++ +    ++ + R
Sbjct: 1  MRISTKGTYALEIIVDLAMHSSEEHLERLKNIAARRGLSEKYLERIVKAMKNENLILSTR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
          G  GG RL R  + IT+LDV+++ E      EC    
Sbjct: 61 GAMGGYRLARRPEDITVLDVLRSVEGELAPVECLTKE 97


>gi|319892680|ref|YP_004149555.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162376|gb|ADV05919.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464282|gb|ADX76435.1| transcriptional regulator, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H      +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L   A +IT  D+++  E    + E   S           G   +  +  NA  
Sbjct: 61  AKGGYELKMSATEITAGDIIRLLEGPLTIVERMESE--------PPGQQQLWLRMRNAVR 112

Query: 120 DVLTQYSIECL 130
           +VL Q +++ L
Sbjct: 113 EVLDQTTLQSL 123


>gi|89256550|ref|YP_513912.1| hypothetical protein FTL_1231 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314981|ref|YP_763704.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502669|ref|YP_001428734.1| rrf2 family transcriptional regulator [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010975|ref|ZP_02275906.1| transcriptional regulator family protein [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254369464|ref|ZP_04985476.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953094|ref|ZP_06557715.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313700|ref|ZP_06804282.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144381|emb|CAJ79670.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129880|gb|ABI83067.1| probable transcriptional regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253272|gb|ABU61778.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122414|gb|EDO66554.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG 
Sbjct: 2   LKISKLLDYGLLVVVTIAQNDSNPYSTAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   +  IT+LD+VK  E+   +  C    K  C L G+C ++   +   +    
Sbjct: 62  EGGYTLVSDSRDITVLDIVKCVEKDVNLTGCCDLQK-KCSL-GNCMVSGYWKVLNSQLLS 119

Query: 121 VLTQYSIECLVRNR 134
           +L++ SI  +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133


>gi|319780584|ref|YP_004140060.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166472|gb|ADV10010.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 156

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       ++ +A    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLARLPAGQLAFVNDVATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPAD+I +  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPADEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSI 127
             +VL Q S+
Sbjct: 121 IAEVLDQRSL 130


>gi|325003478|ref|ZP_08124590.1| rrf2 family protein, putative transcriptional regulator
           [Pseudonocardia sp. P1]
          Length = 156

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R   G+   ++C ++  +   P   S++A    +   +L K +Q LV+AG+ E+V G RG
Sbjct: 2   RMGQGVEWALHCCLNLAWTGEPVPGSRLAAFYDLPPAYLTKQMQALVRAGVCESVPGPRG 61

Query: 63  GVRLCRPADQITILDVV---KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALN 116
           G RL R  +++++LDVV   +  E++F       +     P     GSC  +  +R+A  
Sbjct: 62  GFRLVRAPEEVSLLDVVVALEGPEDAFRCTSILGAAPGGDPAADYSGSCAFSLSMRRAEL 121

Query: 117 AFFDVLTQYSI 127
           A+   L   S+
Sbjct: 122 AWRRELAARSL 132


>gi|299537268|ref|ZP_07050571.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
 gi|298727509|gb|EFI68081.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
          Length = 166

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 18/145 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +   +Y +  L+Y     D P      I  ++E   +SE +L K+L  L K GIV +
Sbjct: 1   MKYSVMVEYALHSLVYLI---DVPKNESIGIKDLSEFQGLSETYLSKVLGKLSKEGIVSS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGS---C 105
           V G +GG RL R  + IT  DVV+A E    + +C        + + K  C    S   C
Sbjct: 58  VSGVKGGYRLNRKPEDITFWDVVRAVEGEEPIFQCKNIKANFAYLNKKQKCESCSSQSNC 117

Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130
            + SV+ +A     + L   +I  L
Sbjct: 118 TINSVMLEAEEHMRNYLRSKTIAWL 142


>gi|154503497|ref|ZP_02040557.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
 gi|153795597|gb|EDN78017.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR+++Y A      +   +++E   IS+ F++KI++ L  AGI+    G 
Sbjct: 1   MQLNIATDYAIRIVIYMAKQRRIVSS-RELSENLKISQPFIYKIMRKLNHAGILAINTGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG  L +  +QI + +++   E +     C    +   C    +C L     K    F 
Sbjct: 60  HGGYILQKETEQINLFEIMDTMERTMKWNRCLEDDRYCSCFATEACRLRETYLKMQEHFE 119

Query: 120 DVLTQYSIECLVR 132
           + L + +I+ +++
Sbjct: 120 NELKETTIQKIIK 132


>gi|295095801|emb|CBK84891.1| rrf2 family protein (putative transcriptional regulator)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 11/137 (8%)

Query: 8   DYGIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YGI  LM    A  N+    + ++A    +   +L KI   L +AG+V +  G+ GG R
Sbjct: 9   EYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVISTEGKGGGFR 68

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLV----GSCGLTSVLRKALN 116
           L RPA+ I++LDV  A +    + EC    +      + P      G CG+ SV+  A  
Sbjct: 69  LARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMDSAQQ 128

Query: 117 AFFDVLTQYSIECLVRN 133
              + L +++I  L R 
Sbjct: 129 RMEEELGRHTILDLARK 145


>gi|315498886|ref|YP_004087690.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315416898|gb|ADU13539.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R  Y IR +   A I      +  ++AE       FL  IL  L + G + + RGR 
Sbjct: 2   LSQRAKYAIRAMQEMARIPQGQTVQAGELAERIKAPLHFLEGILLELRREGFLMSKRGRS 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RP+D I++ D+++  +    +  C +        DCP    C L  VL  A +A
Sbjct: 62  GGYMLARPSDMISMADLIRLIDGPLALTPCASRTAYARCEDCPTPDDCQLRLVLLAARDA 121

Query: 118 FFDVLTQYSI-ECLVRN 133
              VL   ++ E L R 
Sbjct: 122 MARVLESSTLAEPLPRG 138


>gi|297623328|ref|YP_003704762.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297164508|gb|ADI14219.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 146

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LT++  Y ++ L++ A  +   P  I+ IAE+  IS+ FL  IL  L   GI+++ +G
Sbjct: 2   ISLTQKAKYALKALVFLAKAYGKGPVLIANIAESEGISQKFLELILLELKNHGILQSKKG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKAL 115
           R GG  L RP ++I +  V++  E +     C    + S   +C    +C + +V+ +  
Sbjct: 62  RGGGYWLNRPPEEIYLGHVIRIFEGALAPLPCASKRYYSRCEECADEATCEVRAVMLEVK 121

Query: 116 NAFFDVLTQYSIE 128
            A   VL   S++
Sbjct: 122 KATLGVLDTTSLK 134


>gi|255767629|ref|NP_390630.2| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|296333158|ref|ZP_06875611.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. spizizenii ATCC 6633]
 gi|305675336|ref|YP_003867008.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. spizizenii str. W23]
 gi|321312279|ref|YP_004204566.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis BSn5]
 gi|229462859|sp|O34527|CYMR_BACSU RecName: Full=HTH-type transcriptional regulator CymR; AltName:
          Full=Cysteine metabolism repressor
 gi|225185257|emb|CAB14694.2| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|296149356|gb|EFG90252.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. spizizenii ATCC 6633]
 gi|305413580|gb|ADM38699.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis subsp. spizizenii str. W23]
 gi|320018553|gb|ADV93539.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          subtilis BSn5]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    D IT  D+++  E      E     +
Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEE 97


>gi|145628736|ref|ZP_01784536.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
          22.1-21]
 gi|144979206|gb|EDJ88892.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
          22.1-21]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG +L  P++QI++  ++ A  E+  V +C  
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLG 94


>gi|88858497|ref|ZP_01133139.1| transcriptional repressor of the iscRSUA operon
          [Pseudoalteromonas tunicata D2]
 gi|88820114|gb|EAR29927.1| transcriptional repressor of the iscRSUA operon
          [Pseudoalteromonas tunicata D2]
          Length = 162

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  L+  A+H +  P  +++I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTALLDVALHTNVGPVCLAEISERQEISLSYLEQLFARLRKQGLVRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG  L + A +I++ DV+ A +ES     C  
Sbjct: 61 PGGGYLLGKEASEISVGDVISAVDESVDATRCHG 94


>gi|325971575|ref|YP_004247766.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta sp. Buddy]
 gi|324026813|gb|ADY13572.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy]
          Length = 135

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ +  Y ++ ++Y A   +  + I  I+EA  IS  +L +++ PL +AG+V+  RG 
Sbjct: 1   MKLSTKGRYSLQTMVYLATCRENCS-IRSISEATGISSGYLEQLMIPLRRAGLVQAERGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL +    IT  +V+ A+E  F    C      +CP   +C    +     +   D
Sbjct: 60  QGGYRLAKSG--ITCAEVLSASEGDFEPVPCR-----NCPRTDACKTHQIWTMLQSTVVD 112

Query: 121 VLTQYSIECLVRN 133
             +Q +I+ L  +
Sbjct: 113 FTSQVTIDELASH 125


>gi|261405438|ref|YP_003241679.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261281901|gb|ACX63872.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
          Y412MC10]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R    IT  DV++  E
Sbjct: 61 AYGGYILSRDPASITAGDVIRVLE 84


>gi|315303269|ref|ZP_07873911.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
 gi|313628359|gb|EFR96850.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    + P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESIEDEE--------AAQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ S 
Sbjct: 113 DVLDQTTLADLLKHTSD 129


>gi|160895037|ref|ZP_02075811.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
 gi|156863468|gb|EDO56899.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
          Length = 156

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++ +  Y +R+++Y A + N  P  I  +A+   IS+ +L +I+  L   G+V +VRG
Sbjct: 13  LKISTKGRYALRLMIYIAANSNGKPVSIKDVAKNEDISDKYLEQIISILNSGGLVRSVRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ TE +     C      +C     C   ++ ++  +A  
Sbjct: 73  PQGGYLLRKAPEDITVGAVLRLTEGTLAPVACVEEDAPECERESICSTYNLWKQLYSAIC 132

Query: 120 DVLTQYSIECLVRNR 134
            V+   +I  L  +R
Sbjct: 133 SVVDTTTIADLCNSR 147


>gi|152993458|ref|YP_001359179.1| BadM/Rrf2 family transcriptional regulator [Sulfurovum sp. NBC37-1]
 gi|151425319|dbj|BAF72822.1| transcriptional regulator, BadM/Rrf2 family [Sulfurovum sp.
           NBC37-1]
          Length = 132

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ T+Y +  L   +   D P    Q+A    I + FL KILQ + K GI+E+ +G 
Sbjct: 1   MLLTRATEYALLSLDSIS-KADKPVGAEQLANELNIPKSFLAKILQNMAKQGILESRKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSCGLTSVL---RKA 114
            GG  L +  + ITI  ++ A E     V +C +S+   CP   +G+C ++  +   +  
Sbjct: 60  HGGFVLAQTINDITINSIIFAAEGKLPAVFDC-SSYSETCPNGAIGTCVISPFIANFQTK 118

Query: 115 LNAFFDVLT 123
           +N F + LT
Sbjct: 119 INNFLEGLT 127


>gi|329926792|ref|ZP_08281200.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
 gi|328938992|gb|EGG35360.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R    IT  DV++  E
Sbjct: 61 AYGGYILSRDPASITAGDVIRVLE 84


>gi|312144048|ref|YP_003995494.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
          'sapolanicus']
 gi|311904699|gb|ADQ15140.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
          'sapolanicus']
          Length = 149

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R LMY  A        + +IAE   ISE +L ++   L KA +V+ +RG
Sbjct: 1  MEISSQARYGLRALMYIAASEGSQAIPLREIAEKQNISERYLEQLFAKLKKADLVKGIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +  ++IT  D++K  E
Sbjct: 61 AHGGYLLNQSPEEITAADILKVLE 84


>gi|148654472|ref|YP_001274677.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566582|gb|ABQ88727.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus sp. RS-1]
          Length = 146

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R L+  A    + P +   I     I E +L +IL  L +A ++E++RG
Sbjct: 1   MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRARLIESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R   QIT+LD + A E     A+       D P         ++R+  +   
Sbjct: 61  PQGGHRLARHPSQITVLDALLALEGPLLAADSGR----DAPTPTEPMDRELVREVWDGAR 116

Query: 120 DVLTQY 125
           ++L +Y
Sbjct: 117 EMLERY 122


>gi|311069236|ref|YP_003974159.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          atrophaeus 1942]
 gi|310869753|gb|ADP33228.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          atrophaeus 1942]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H D P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGDGPTSLKTIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    + IT  D+++  E      E     +
Sbjct: 61 AYGGYVLGSEPETITAGDIIRVLEGPISPVEVLEDEE 97


>gi|290960745|ref|YP_003491927.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260650271|emb|CBG73387.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 152

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R ++  A+  D  P +   IA    I   FL  IL  L + G+V + RG
Sbjct: 1  MRISARADYAVRAVLEVAVRQDGGPVKAEVIATVQEIPHKFLEGILGDLRRGGLVTSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R    IT+ DV++A +
Sbjct: 61 GSGGYRLAREPAAITVADVIRAVD 84


>gi|332186375|ref|ZP_08388120.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
 gi|332013743|gb|EGI55803.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
          Length = 151

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY + V+M  A       R +   +A    +      K++  L  AG++E+ R
Sbjct: 1   MRLSSLADYAV-VMMTAAAREGVGGRSNATLLAGQTGVPLPTAQKLVSRLAGAGLIESTR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKAL 115
           G  GG+RL R AD I++ D+V+A +    +  C      DC L   C +     V+ +A+
Sbjct: 60  GTGGGIRLARDADAISLADIVEAVDGPIALTACVEGAAHDCGLEMQCRVRPHWHVVNQAV 119

Query: 116 NAFFD-----VLTQYSIECLVRNRSSIKKIF 141
            A F       L    +E  V + S    +F
Sbjct: 120 RAAFSGVTLATLAADPVESQVMDASPRPGVF 150


>gi|323136514|ref|ZP_08071596.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
 gi|322398588|gb|EFY01108.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
          Length = 157

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A +       ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKAKYGLKAMVHLAGVEPGQTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116
           GG  L R   +I++ ++V+A +      +C AS  I     DC     C +  V+ +A +
Sbjct: 62  GGYMLARLPSEISVGNLVRALDGPLAPIQC-ASKTIYRRCDDCVDEKHCSVRLVMMEARD 120

Query: 117 AFFDVLTQYSIE 128
           A   VL   S+E
Sbjct: 121 AIAKVLDNTSLE 132


>gi|295104009|emb|CBL01553.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii SL3/3]
          Length = 157

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL +     T  ++++A E S     C  S   +CP+   C      + L + +N
Sbjct: 61  SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 QYIDSVT 127


>gi|289643651|ref|ZP_06475764.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
           Datisca glomerata]
 gi|289506542|gb|EFD27528.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
           Datisca glomerata]
          Length = 151

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 20/142 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  N    +   +A A  +   FL  IL  L ++G+V + RG 
Sbjct: 1   MQISARADYALRALLTLAASNGDLVKGETLATAQDLPLRFLENILTDLRRSGLVRSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RLCRPA++IT+  V++AT               D PL    G     R+   A ++
Sbjct: 61  DGGYRLCRPANEITVAMVIRAT---------------DGPLASVRG-----RRPEEAVYE 100

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
              ++  E  +  R SI+++  
Sbjct: 101 GAAKHLQEVWIAVRVSIRRVLE 122


>gi|162148831|ref|YP_001603292.1| Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545421|ref|YP_002277650.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787408|emb|CAP57003.1| putative transcriptional regulator, rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533098|gb|ACI53035.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 161

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY +  L+  A   D       +++A  I E  + K+L+ L    +V ++RG 
Sbjct: 2   LKLSKLTDYAVVALVRLA-QEDEVMTSPALSQATGIPEPTVAKVLKILAVHDLVVSLRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119
           RGG RL RP + I++  V+ A +    +  C      D  P  G CG    +  A+    
Sbjct: 61  RGGYRLARPLNDISVARVITAVDGPISLTACVDGGGCDTRPFCGVCGQWDAVNDAIRGAL 120

Query: 120 DVLT 123
             +T
Sbjct: 121 SAIT 124


>gi|90419967|ref|ZP_01227876.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336008|gb|EAS49756.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 139

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++R  Y IR L   A     P   + IA    I   FL  IL  L +AG++ ++RG RG
Sbjct: 2   ISQRARYAIRSLRNIAPRA-APVSAAVIAVEEQIPRKFLEAILAELKQAGLLVSLRGARG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G RL RP +QI+  DV++  +    +A C +        DC  V SC   + L    +A 
Sbjct: 61  GYRLARPGEQISFADVLRVVDGPLALAPCASRTAYRRCEDCRDVESCETRTALLAVRDAT 120

Query: 119 FDVL 122
             +L
Sbjct: 121 AAIL 124


>gi|242240170|ref|YP_002988351.1| DNA-binding transcriptional regulator IscR [Dickeya dadantii
           Ech703]
 gi|242132227|gb|ACS86529.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech703]
          Length = 164

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV N+
Sbjct: 119 EFLNNITLDELVNNK 133


>gi|116669822|ref|YP_830755.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609931|gb|ABK02655.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
          Length = 136

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 13/122 (10%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---- 83
           +++AE   +   +L K LQ LV+AGI+ +V G RGG +L R A+ IT+LDVV A E    
Sbjct: 4   ARLAELYQLPAAYLNKQLQALVRAGILYSVSGPRGGFQLARGAETITVLDVVLAIEGPDP 63

Query: 84  ----ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
               ES       A    D   + SC ++  +R+A  A+   L++ +I  +    +S+++
Sbjct: 64  AFRCESILANAPGADPGED--YLRSCLVSQTMRQAELAWRQTLSRQTIAGIA---ASVER 118

Query: 140 IF 141
            F
Sbjct: 119 KF 120


>gi|290968839|ref|ZP_06560376.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781135|gb|EFD93726.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 144

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY IR+L   A+     + I +I++   I   F +KI + L  AG +E +RG 
Sbjct: 1  MIITRETDYAIRILR--ALEGKDVSSIREISDTEYIPLQFAYKIAKKLDHAGCIEIIRGP 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG RL +    +T+ ++++ T+    V  C 
Sbjct: 59 HGGCRLVKDLHAVTLFEIIQITDRENMVTSCM 90


>gi|228993237|ref|ZP_04153158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
 gi|228999285|ref|ZP_04158865.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|229006840|ref|ZP_04164473.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228754462|gb|EEM03874.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228760482|gb|EEM09448.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|228766563|gb|EEM15205.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
          Length = 151

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           +GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 68  KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   +++ LV N +S IKK
Sbjct: 128 AMESVLANVTVQQLVTNLQSKIKK 151


>gi|219667205|ref|YP_002457640.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Desulfitobacterium hafniense DCB-2]
 gi|219537465|gb|ACL19204.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
          hafniense DCB-2]
          Length = 147

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  A+H+   +  +S IAE   ISE +L ++   L KAGI+ +V+G
Sbjct: 1  MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
           +GG  L   A +I +  +++  E    VA
Sbjct: 61 AQGGYVLADKAAEIKVGTILRVLEGELSVA 90


>gi|194016021|ref|ZP_03054636.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012376|gb|EDW21943.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 145

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++  +        +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSSTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  + I+ LDV++A E    +  C   H    P  G C +  V++       
Sbjct: 61  AKGGYAIMKQKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHDG-CLIEQVMQDVETKMQ 119

Query: 120 DVLTQ 124
           + L+Q
Sbjct: 120 ETLSQ 124


>gi|163749695|ref|ZP_02156941.1| Rrf2 family protein [Shewanella benthica KT99]
 gi|161330508|gb|EDQ01466.1| Rrf2 family protein [Shewanella benthica KT99]
          Length = 167

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 15  MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRHGLVSSVRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES  V  C    + DC     C   S+         
Sbjct: 75  PGGGYRLGADAVDISVGMVVRAVDESVDVTRC--KGQGDCQNGTRCLTHSLWGDLSKQIS 132

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L+  R
Sbjct: 133 DFLNGISLAGLMNKR 147


>gi|167623502|ref|YP_001673796.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353524|gb|ABZ76137.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           halifaxensis HAW-EB4]
          Length = 153

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C    + +C     C   S+     N   
Sbjct: 61  PGGGYRLGTDACDISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSNQIS 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L+  R
Sbjct: 119 DFLNGISLAGLMHKR 133


>gi|218885727|ref|YP_002435048.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756681|gb|ACL07580.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 189

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++    Y  R+L+  A+H   D P   S++AE   IS  F+ KI++ L  AG+V +VR
Sbjct: 1   MRISSTVHYASRLLVNLALHCPQDGPLSASELAEHTGISVKFIEKIIRQLRTAGMVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    D +T+ DV++  E       C      DC     C   +    A  A 
Sbjct: 61  GAAGGHVLTMNPDDVTLGDVLRVVEGGVQPPNCCVG--ADCDDT-PCRCKAAWTSAAKAL 117

Query: 119 FDVLTQYSI 127
            + L Q+++
Sbjct: 118 EETLDQFTL 126


>gi|217967934|ref|YP_002353440.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
          DSM 6724]
 gi|217337033|gb|ACK42826.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus
          turgidum DSM 6724]
          Length = 144

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 5/92 (5%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          ++ + +YG+R +++     +YP+    +SQI++   IS  FL +++  L +A +VE+ +G
Sbjct: 4  VSAKLEYGLRAMIFLG--KNYPHEKLTLSQISQEENISREFLAQLMSELRRANLVESYKG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L +P  +IT+ ++ +A E    + +C
Sbjct: 62 ITGGYTLTKPPHEITLKEIFEALEGPIQIIDC 93


>gi|260753062|ref|YP_003225955.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552425|gb|ACV75371.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 135

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 3/109 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58
           MHL+  TDY + VL     H      ++ +  AE   +    + K++  L  A ++ ++R
Sbjct: 1   MHLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           G  GG  L RPA++IT+ DVV+A E    ++ C     + C     CG+
Sbjct: 61  GMGGGFTLARPAEEITLADVVEAIEGPIAMSSCDNKESL-CKFSAECGM 108


>gi|258544534|ref|ZP_05704768.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
 gi|258520216|gb|EEV89075.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
          Length = 155

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +TK ++Y   +L             + +A+   I+     K+L+ L + GI+E++RG 
Sbjct: 2   LRITKESEYAFLLLGAILSAEGAARNTATLAKEARIAVPMSGKVLKRLTQQGILESIRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            GG +L R A+ +T LDVV+A E    + EC  + + +C L   C
Sbjct: 62  HGGYQLARAAESVTALDVVEAIEGGPELVEC-TNGETNCALAEHC 105


>gi|322514681|ref|ZP_08067709.1| iron-sulfur cluster assembly transcription regulator IscR
           [Actinobacillus ureae ATCC 25976]
 gi|322119379|gb|EFX91488.1| iron-sulfur cluster assembly transcription regulator IscR
           [Actinobacillus ureae ATCC 25976]
          Length = 150

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV++VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLTDISERQAISLSYLEQLFAQLRREGIVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    L   L   + 
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEDQIG 118

Query: 117 AFFDVLT 123
            F + +T
Sbjct: 119 VFLNTIT 125


>gi|315645813|ref|ZP_07898934.1| transcriptional regulator, BadM/Rrf2 family protein
          [Paenibacillus vortex V453]
 gi|315278574|gb|EFU41888.1| transcriptional regulator, BadM/Rrf2 family protein
          [Paenibacillus vortex V453]
          Length = 139

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R    IT  DV++  E
Sbjct: 61 AYGGYILSRDPATITAGDVIRVLE 84


>gi|308174453|ref|YP_003921158.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
 gi|307607317|emb|CBI43688.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
 gi|328554372|gb|AEB24864.1| transcription repressor [Bacillus amyloliquefaciens TA208]
 gi|328912776|gb|AEB64372.1| transcription repressor [Bacillus amyloliquefaciens LL3]
          Length = 138

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    ++IT  D+++  E      E     +
Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEE 97


>gi|302873942|ref|YP_003842575.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
 gi|307689807|ref|ZP_07632253.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
          cellulovorans 743B]
 gi|302576799|gb|ADL50811.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
          Length = 167

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y I  L+Y     +  +  I  +A    ISE +L K+   L K+GIV+++ G
Sbjct: 1  MKFSVGVEYAIHCLLYMVNSEEGTSVGIRDLATFQGISETYLSKVYAKLSKSGIVKSIPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87
           +GG  L R A++IT  DVV+A E  E FF
Sbjct: 61 VKGGYALARSAEEITFWDVVEAVEGSEPFF 90


>gi|154148684|ref|YP_001406497.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153804693|gb|ABS51700.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis
           ATCC BAA-381]
          Length = 137

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  +++ A  N  P  +  I+    I + FL KILQ L + GI+++ +G 
Sbjct: 1   MLFTKASEYALLSMIFIA-RNKEPVGVDAISNELKIPKSFLAKILQDLARDGILQSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGS--CGLTSVLRKAL 115
           +GG  L +   +I++ ++V++ E+   S F  EC ++++  CP      C +  +     
Sbjct: 60  KGGFLLAKKPLEISLNEIVQSAEKKQNSIF--EC-SNNRASCPSNKGEICEIWHIFSGIQ 116

Query: 116 NAFFDVLTQYSIECLVR 132
           N    +L  +++E  ++
Sbjct: 117 NKVDAILDNFTLENFIK 133


>gi|197301334|ref|ZP_03166419.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
          29176]
 gi|197299652|gb|EDY34167.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
          29176]
          Length = 147

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+K++ YG+R L+  A+ N    ++S   IA+   IS  +L  +   L KA IV++++
Sbjct: 1  MKLSKKSRYGLRALIDLAV-NSRTEQVSLGSIAQRNDISAQYLEHVFSALRKAHIVKSIK 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAE 90
          G +GG  L +  + IT+ ++V+A E S+++ +
Sbjct: 60 GSQGGYFLEKAPELITVAEIVEALEGSYYLED 91


>gi|251798602|ref|YP_003013333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247546228|gb|ACT03247.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 144

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I  D  N    IA +   + + + ++L  L KAG+V+ VR  
Sbjct: 1   MKISSRFSIAVHILSLLEISKDAHNTSEWIAGSVNTNPVIIRRLLGQLKKAGLVQ-VRAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LD+ +A +  E   +         DCP+  S    L  VL+K+ +
Sbjct: 60  TGGSYLTKEMSEITLLDIFRAVDVVEEGQLFHIHEGPNPDCPVGASIQVVLELVLKKSQD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL Q ++E LV +
Sbjct: 120 AMESVLAQITLEELVAD 136


>gi|298248163|ref|ZP_06971968.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
 gi|297550822|gb|EFH84688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
          Length = 135

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  ++ T+Y +  +MY  A+       + ++AE   +S  +L KIL  LVKAGI+E+  G
Sbjct: 1  MKYSQATNYALHTMMYFVALPVGSTIGVQRLAELQKLSPTYLSKILTKLVKAGIIESTPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R    ++ L+V+ A E
Sbjct: 61 VNGGYRLTRNKADLSFLEVIHAIE 84


>gi|260464287|ref|ZP_05812479.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259029911|gb|EEW31195.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 172

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 10  GIRVLMYCA-----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           G+   ++CA     +  +     + +AE+  +S  +L K L  L  A I+E+V G  GG 
Sbjct: 6   GVEAAIHCAATLASVEGNSTMPGAALAESFGLSPSYLLKHLNMLTAARILESVPGPAGGY 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAF 118
           RL +PA++IT+LD+V A E       C         K+D    V  CG+ + + KA  A+
Sbjct: 66  RLAKPAERITLLDIVLAVEGREPAFRCGEIRRNGPVKLDASAYVKPCGINAAMLKAERAY 125

Query: 119 FDVLTQYSIECLV 131
              L +  +  +V
Sbjct: 126 RAALAETRLSDIV 138


>gi|258405006|ref|YP_003197748.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
 gi|257797233|gb|ACV68170.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
          Length = 163

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YGIR+++  A    + P  +  +A+   IS  +L K+ + L ++G + +  G
Sbjct: 1   MRLSTRSRYGIRLMLDIAQQGQHGPVALRDVADRQDISLKYLEKLSRRLRESGFLMSRLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
            +GG  L RPA +ITI +++++ E    + +C+   K  C  V  C        +  VL 
Sbjct: 61  AKGGYVLGRPAAEITIKELIESLEGHVGLVQCWLEEKA-CSRVDQCLAYSLWARINEVLA 119

Query: 113 KALNAF 118
           + LNA 
Sbjct: 120 RELNAI 125


>gi|218665081|ref|YP_002427593.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517294|gb|ACK77880.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 175

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K ++Y ++ L+Y A   +  P     I++   +   +L KILQ L K G++++ +G
Sbjct: 14  MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 73

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L   A Q+ ILD+++  E   F   C    K  C    +C + +  +       
Sbjct: 74  RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 132

Query: 120 DVLTQYSIECLVR 132
           D+L + +I  +  
Sbjct: 133 DLLGRQTIASMAE 145


>gi|53803005|ref|YP_115276.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53756766|gb|AAU91057.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 162

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 14/152 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A H++  P  ++ IA+   IS  +L ++   L +AG+VE VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAYHSETNPVTLTDIAKRQNISLSYLEQLFARLRRAGMVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
             GG +L R A +I I +++ A +E      C    K +C     C       GL+  +R
Sbjct: 61  PGGGYQLSRCASEINIAEIIAAVDEPIDSTRCGG--KANCQNNQPCLTHDLWMGLSEQIR 118

Query: 113 KALN--AFFDVLTQYSIECLV--RNRSSIKKI 140
           + L   +  +VLT+  +  +   ++R S +++
Sbjct: 119 EYLASISLGEVLTRQPVRQVAERQDRQSQRRV 150


>gi|152990870|ref|YP_001356592.1| BadM/Rrf2 family transcriptional regulator [Nitratiruptor sp.
           SB155-2]
 gi|151422731|dbj|BAF70235.1| transcriptional regulator, BadM/Rrf2 family [Nitratiruptor sp.
           SB155-2]
          Length = 133

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ T+Y +  L+  A   + P     ++    IS  FL KILQ L K  I+++ +G 
Sbjct: 1   MLFTRATEYALLALVVIA-KEERPLGTDYLSRRLNISRSFLAKILQALAKQDILKSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG +L RPA+Q++I ++  A E +   + +C +S +  CP      C L   L K    
Sbjct: 60  SGGFQLARPANQLSIKEISTAAEGKGVNIFDC-SSDQACCPSNKGDFCTLWPFLNKLQTR 118

Query: 118 FFDVLTQYSIECLVR 132
             D L + +++ L+ 
Sbjct: 119 VDDFLEELTLQDLME 133


>gi|169829936|ref|YP_001700094.1| putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
 gi|168994424|gb|ACA41964.1| Putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
          Length = 138

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +K T+Y +  +++     + P      +  +A+   +S  +L KIL  LVKAG++E+
Sbjct: 2   MKYSKATNYALHTMVFLT---NMPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIES 58

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             G  GG R+ +   +I+ LDV+ A E    +  C + H+ D      C +  V+  A N
Sbjct: 59  NPGVNGGYRISKRPQEISFLDVIYAIEGQTTLFSCSSDHE-DSFHNEGCLIEQVMVDAEN 117

Query: 117 AFFDVLTQ 124
              + L++
Sbjct: 118 NMKEELSK 125


>gi|121609329|ref|YP_997136.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
           eiseniae EF01-2]
 gi|121553969|gb|ABM58118.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
           eiseniae EF01-2]
          Length = 179

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N  P  ++ I++   IS  +L ++   L + GIVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRNGIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
             GG  L R AD  T+ D++ + +E     +C    K +C  +G  G  +T  L  ALN
Sbjct: 61  PGGGYTLARRADDTTVADIIVSVDEPMDATQC--GGKENC--LGEAGRCMTHELWTALN 115


>gi|91792814|ref|YP_562465.1| iron-sulfur cluster assembly transcription factor IscR [Shewanella
           denitrificans OS217]
 gi|91714816|gb|ABE54742.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           denitrificans OS217]
          Length = 153

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSTTGPVPLADISERQGISLSYLEQLFAKLRKEGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A  I+I  VV A +ES  V  C    K +C     C   S+         
Sbjct: 61  PGGGYHLGLEAKDISISMVVHAVDESVDVTRCQG--KGNCQSGTRCLTHSLWGDLSKQIA 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L++ R
Sbjct: 119 DFLDGISLAGLMQKR 133


>gi|260881734|ref|ZP_05405118.2| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
           multacida DSM 20544]
 gi|260848283|gb|EEX68290.1| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
           multacida DSM 20544]
          Length = 154

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +  L   A+ + +    +  IA +  +SE +L +++ PL +AGIV++VRG
Sbjct: 5   MKISTKGRYSVTALYELALRYGEGAVSLKSIATSQGLSENYLEQLMAPLRRAGIVKSVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L R   +ITI +++   E    + +C      S +  C    +C    V  K  
Sbjct: 65  AQGGYMLARDPKEITIGEIITTVEGPIALVDCLLTSAESAEQPCDRACACVTRGVWEKVC 124

Query: 116 NAFFDVLTQYSI 127
           ++  +VL   ++
Sbjct: 125 DSISNVLNHITL 136


>gi|170726128|ref|YP_001760154.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi
          ATCC 51908]
 gi|169811475|gb|ACA86059.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi
          ATCC 51908]
          Length = 153

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVAMHSTAGPVPLADISERQGISLSYLEQLFAKLRKQGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL   A +I++  VV+A +ES     C
Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRC 92


>gi|198284912|ref|YP_002221233.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198249433|gb|ACH85026.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 162

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K ++Y ++ L+Y A   +  P     I++   +   +L KILQ L K G++++ +G
Sbjct: 1  MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          R GG  L   A Q+ ILD+++  E   F   C
Sbjct: 61 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGC 92


>gi|126651583|ref|ZP_01723786.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
 gi|126591532|gb|EAZ85638.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
          Length = 166

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +   +Y +  L+Y     D P      I  ++E   +SE +L K+L  L KAGIV +
Sbjct: 1   MKYSVMVEYALHSLVYLI---DVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDC 99
           V G +GG +L +  + I+  DVVKA E    +  C      FA+   +C
Sbjct: 58  VSGVKGGYKLSKKPEDISFWDVVKAVEGESPIFHCKNIKANFANQTENC 106


>gi|302875241|ref|YP_003843874.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
 gi|307687906|ref|ZP_07630352.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
           cellulovorans 743B]
 gi|302578098|gb|ADL52110.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
          Length = 132

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T+ +DY +R ++  A    YPN+I    IAE+C I   FL K+L+ L KA +V + R
Sbjct: 1   MKITQESDYALRAVVNIA--EKYPNKIEAKVIAESCDIPLRFLLKLLRKLTKAHVVRSYR 58

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117
           G  GG  L    + IT+  V++A E    + +C    ++      G C ++  LRK   +
Sbjct: 59  GINGGYALATNPEDITMASVIEAIEGPIILNKCIQDKELCSNNRKGKCNISMELRKIQES 118

Query: 118 FFDVLTQYSIECLV 131
               L    I  L+
Sbjct: 119 LLKELRSRKISDLL 132


>gi|72161204|ref|YP_288861.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca
          YX]
 gi|71914936|gb|AAZ54838.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca
          YX]
          Length = 150

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R DY +R     A     P    Q+A A  I   FL  IL  L +AG+V + RG 
Sbjct: 1  MRLSARVDYALRAAAELAAVGGGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA +I++ D+++A +
Sbjct: 61 VGGYWLARPASEISLADIIRAVD 83


>gi|330836543|ref|YP_004411184.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
 gi|329748446|gb|AEC01802.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
          Length = 144

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ RT YG+R+L+  A  +   P  ++  A    I   +L ++   L  +G + +V+G
Sbjct: 1   MKISTRTHYGVRLLVDLASQDMADPVPLATTAGRQDIPLRYLEQVADILRWSGFLLSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  I + DV++A E    + +   SH+ +  L   C   +V  K  +A  
Sbjct: 61  ASGGYRLARPAQDILLGDVLRALEGDLNIVDPLQSHEAENRL-QQCLRLTVYNKLEHAIA 119

Query: 120 DVLTQYSIECLV 131
           +V+   S+  L+
Sbjct: 120 NVVDTISLASLI 131


>gi|322392211|ref|ZP_08065672.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
          700780]
 gi|321144746|gb|EFX40146.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
          700780]
          Length = 158

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          MHL+   +  I VL+        +Y N I  ++E   +S+ +L KI++ L   G+V++VR
Sbjct: 1  MHLSSGWEQSIYVLLMLDQLPEGEYINSIF-LSERLGVSDSYLKKIIKLLDNEGLVKSVR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G+ GG+ L RP  QI+  DV  A E
Sbjct: 60 GKNGGIALSRPLSQISFYDVFVAIE 84


>gi|229543731|ref|ZP_04432791.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229328151|gb|EEN93826.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  +   P  +  IA++  +SE +L +++ PL  AG V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKRYGMGPTSLKSIAQSQNLSEHYLEQLISPLRNAGFVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   QIT  DV++  E      E     +   P+     +     +  +A  
Sbjct: 61  AYGGYVLTRKPSQITAGDVIRVLEGPITPVEGIEDEE---PVKRQLWI-----RIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSSIK 138
           DVL   +IE L + R   +
Sbjct: 113 DVLDSTTIEDLAKYREDTE 131


>gi|226311480|ref|YP_002771374.1| transcriptional regulator of cysteine metabolism [Brevibacillus
          brevis NBRC 100599]
 gi|226094428|dbj|BAH42870.1| transcriptional regulator of cysteine metabolism [Brevibacillus
          brevis NBRC 100599]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +  D+I+  DV++  E
Sbjct: 61 AYGGYVLAKQPDEISAGDVIRVLE 84


>gi|157737595|ref|YP_001490278.1| hypothetical protein Abu_1353 [Arcobacter butzleri RM4018]
 gi|157699449|gb|ABV67609.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 135

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 49/87 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+  + Y I+VL+Y A  N     + ++++   I   +L K++  L K  ++  ++GR
Sbjct: 1  MILSTTSQYAIKVLIYMAEDNSKLYSVKELSKILEIPYKYLSKVMTNLSKKELILAIQGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
           GG +L +P ++I + D++ A E+  F
Sbjct: 61 YGGFKLSKPKEEIKLKDILVALEDESF 87


>gi|330717994|ref|ZP_08312594.1| transcriptional regulator [Leuconostoc fallax KCTC 3537]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  +  + VL+  A+  D  P +   ++    +SE +  K ++ L  AGIV  +  
Sbjct: 1   MKMSQAVEQSLVVLIMLAVQQDNAPVKSHILSSRLEVSESYFKKTMRKLRIAGIVTAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASH--KIDCPLV--GSCGLTSVLRK 113
           + GG +L RP  QIT+LDV +A   E+SF  +   A    K    LV  G+  + +++  
Sbjct: 61  KEGGFKLARPLHQITLLDVYEAIEGEDSFIHSTQLADRIFKGSDELVKSGTKEVLAIIYD 120

Query: 114 ALNAFFDVLTQYSI 127
           A  AF   L  Y+I
Sbjct: 121 AEQAFKQKLADYTI 134


>gi|288549656|ref|ZP_05967727.2| transcriptional regulator, BadM/Rrf2 family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317777|gb|EFC56715.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 174

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  LM C +      R   + E   +  +   +L KI   L +AG+V +  G+ GG 
Sbjct: 15  EYGIHSLM-CMVDAKGCEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVSSTEGKGGGF 73

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLV----GSCGLTSVLRKAL 115
           +L RPA+ I++LDV  A +    + EC    +      + P      G CG+ SV+  A 
Sbjct: 74  KLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMDSAQ 133

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L++++I  L R 
Sbjct: 134 QRMEEELSRHTILDLARK 151


>gi|326799915|ref|YP_004317734.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sphingobacterium sp. 21]
 gi|326550679|gb|ADZ79064.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
           21]
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R + Y A   H      I +IA+A    E FL KILQ L K G++++V+G 
Sbjct: 4   FSKTAEYAMRAVFYIAQRSHEGQRTGIKEIADAVNSPEAFLAKILQKLSKVGLIQSVKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPLVG 103
            GG  +        + D+V A E       C     + S +  CPL G
Sbjct: 64  NGGFYIDTSGFSRPLADIVIAVEGDTIFKGCGMGLSYCSEEYPCPLHG 111


>gi|281418212|ref|ZP_06249232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
 gi|281409614|gb|EFB39872.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
 gi|316941312|gb|ADU75346.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 1313]
          Length = 148

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          + +Y   IS I+E   IS++FL ++   L KA IV + +G +GG +L R   QIT+LDV+
Sbjct: 23 NGEYITVIS-ISEKLGISKIFLEQVFSSLKKAKIVSSTKGAQGGYQLTRTPSQITVLDVL 81

Query: 80 KATEESFF 87
           + E S F
Sbjct: 82 LSVEVSLF 89


>gi|15896762|ref|NP_350111.1| hypothetical protein CA_C3525 [Clostridium acetobutylicum ATCC
          824]
 gi|15026619|gb|AAK81451.1|AE007849_5 Uncharacterized conserved protein, YjeB/RRF2 family [Clostridium
          acetobutylicum ATCC 824]
 gi|325510933|gb|ADZ22569.1| Conserved hypothetical protein [Clostridium acetobutylicum EA
          2018]
          Length = 168

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y +  L+Y     +  +  I  +A    ISE +L K+   L K+GI++++ G
Sbjct: 1  MKFSVGVEYALHCLLYMVNAEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87
           +GG  L R A++IT  DVV+A E  ESFF
Sbjct: 61 VKGGYALARSAEEITFWDVVEALEGSESFF 90


>gi|319649301|ref|ZP_08003459.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398935|gb|EFV79615.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 138

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y  +     +  + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVYLTLTPKGKSVGVEQLAKIQNLSPTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  +   + + + LDV+ A E    +  C   H  D      C +  V+ +A     
Sbjct: 61  VKGGYSIVSHSRKTSFLDVIHAIEGHTTLFHCSLEH--DDLQNEDCLIEKVMFEAEKKMK 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L    I  + +   S KK
Sbjct: 119 DELNTKYISDIAKEIDSTKK 138


>gi|255020290|ref|ZP_05292358.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC
          51756]
 gi|254970210|gb|EET27704.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC
          51756]
          Length = 162

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K ++Y ++ L+Y A   +  P     I++   +   +L KILQ L K G++++ +G
Sbjct: 1  MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLRVPAQYLAKILQVLAKRGVLDSYKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          R GG  L   A+Q+ IL+VV+  E + F   C
Sbjct: 61 RGGGFVLRPGAEQMNILEVVEMVEGAPFGQGC 92


>gi|255658792|ref|ZP_05404201.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
 gi|260849190|gb|EEX69197.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
          Length = 148

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  + Y A +     P  I  I+E   IS+++L ++   L +A +V +++
Sbjct: 1   MKISAKGRYGLAAMTYLARNYAAGTPITIVSISEKLGISKIYLEQVFSLLKRARLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSV---LR 112
           G +GG +L RP  +IT  D++ + E S       A+ +    L   + SC  T +   ++
Sbjct: 61  GSQGGYQLARPPREITPYDILSSIELSLMEKTAPAAQEKMPELDRALASCVFTPLDEAIQ 120

Query: 113 KALNAFF--DVLT 123
           KAL+A    D+LT
Sbjct: 121 KALSAISLDDILT 133


>gi|329848850|ref|ZP_08263878.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843913|gb|EGF93482.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  Y ++ L++ A          QIAEA  I + FL  ILQ L + GI+++ RG  G
Sbjct: 2   LSMKAKYALKALIHMAQSTSPTLPSKQIAEAEDIPQKFLDNILQELRQNGIIDSKRGIFG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHK-IDCPLVGSCGLTSVLRKALNAF 118
           G  L RPA  I + DV++  +       C    A  K  DC    +C L  ++R   +A 
Sbjct: 62  GYFLARPATDIYLGDVIRVIDGPLAPIRCASLTAYQKCDDCRDETTCHLRRLMRDVRDAM 121

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             +L    ++ LV   S I+
Sbjct: 122 SAILDGRCLQDLVTAPSLIE 141


>gi|224367513|ref|YP_002601676.1| hypothetical protein HRM2_03930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690229|gb|ACN13512.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 162

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 22  DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           D+P      I QIAE   I   +L K+   L KAGIV +  G +GG  L + A+ I+  D
Sbjct: 19  DFPEHKTIGIKQIAELNKIKVTYLSKVFTKLRKAGIVRSTPGVKGGYELAKQAENISFWD 78

Query: 78  VVKATEESFFVAECFASHK----IDCPLVGS----CGLTSVLRKALNAFFDVLTQYSIEC 129
           +++A E   +  +C    K    +D P V +    C +  V+++A   F D L   S+  
Sbjct: 79  IIEAIEGPTYFFQCAEIRKKNIFVDDPSVFTAECPCLIKVVIQEAEELFRDRLRNRSLRW 138

Query: 130 L 130
           L
Sbjct: 139 L 139


>gi|296112834|ref|YP_003626772.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          RH4]
 gi|295920528|gb|ADG60879.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          RH4]
 gi|326561076|gb|EGE11441.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          7169]
 gi|326561502|gb|EGE11846.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          46P47B1]
 gi|326565370|gb|EGE15548.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          12P80B1]
 gi|326566701|gb|EGE16840.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          103P14B1]
 gi|326567535|gb|EGE17650.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          BC1]
 gi|326569382|gb|EGE19442.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          BC8]
 gi|326571418|gb|EGE21433.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          BC7]
 gi|326575299|gb|EGE25227.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          CO72]
 gi|326576615|gb|EGE26522.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          101P30B1]
 gi|326577518|gb|EGE27398.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
          O35E]
          Length = 168

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R  Y +  L+  A+          +S IA+   IS  +L ++   L K G+V + 
Sbjct: 1  MRLTTRGRYAVTALLDLAVQESRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          RG  GG  L +P + I I+ ++ A +ES    +C
Sbjct: 61 RGALGGYHLAKPLEDIDIMSIITAVDESINATQC 94


>gi|254439600|ref|ZP_05053094.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
          307]
 gi|198255046|gb|EDY79360.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
          307]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  L   A+   ++P  I  +A+   IS  +L ++   L  AG+V +VRG
Sbjct: 1  MKLTTKGRYAMVALTDLALEATEHPVSIRALAKRQDISVTYLEQLFVKLRGAGLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L RP   I I+DV+KA +ES
Sbjct: 61 PGGGYSLARPPSDIRIVDVLKAVDES 86


>gi|332141977|ref|YP_004427715.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551999|gb|AEA98717.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 161

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
             GG  L R A +I I +V++A +ES     C    + DC     C LT  L + L+   
Sbjct: 61  PGGGYLLGREASEIAIGEVIRAVDESIDATRCQG--QADCQGGDRC-LTHSLWQDLSDRI 117

Query: 117 -AFFDVLT 123
            AF + +T
Sbjct: 118 AAFLNSIT 125


>gi|32034036|ref|ZP_00134280.1| COG1959: Predicted transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208408|ref|YP_001053633.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae L20]
 gi|165976351|ref|YP_001651944.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190150259|ref|YP_001968784.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251397|ref|ZP_07337574.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252975|ref|ZP_07339130.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245844|ref|ZP_07527929.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247920|ref|ZP_07529954.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250175|ref|ZP_07532134.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252558|ref|ZP_07534453.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254817|ref|ZP_07536643.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259259|ref|ZP_07540988.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263598|ref|ZP_07545212.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097200|gb|ABN74028.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876452|gb|ABY69500.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189915390|gb|ACE61642.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648166|gb|EFL78367.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649751|gb|EFL79930.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853204|gb|EFM85424.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855570|gb|EFM87739.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857806|gb|EFM89903.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859963|gb|EFM91981.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862188|gb|EFM94156.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866626|gb|EFM98485.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871061|gb|EFN02791.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 150

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    L   L + + 
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEEQIG 118

Query: 117 AFFDVLT 123
            F + +T
Sbjct: 119 VFLNTIT 125


>gi|256026588|ref|ZP_05440422.1| hypothetical protein PrD11_01075 [Fusobacterium sp. D11]
 gi|260494648|ref|ZP_05814778.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289764592|ref|ZP_06523970.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|260197810|gb|EEW95327.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289716147|gb|EFD80159.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 141

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L Y ++ +   +RI   S+IAE   I  LF  ++L+ + K G+++  
Sbjct: 1   MKLKNEIEYVFRILNYLSLQD--KDRIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114
           +G  GG +L R    IT+ D V+  E+   + +  C A          SC +    L K 
Sbjct: 59  KGANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSCSIIFEALEKV 111

Query: 115 LNAFFDVLTQYSIECL 130
            N F   L + + + L
Sbjct: 112 ENNFLKNLEKVNFQEL 127


>gi|169828688|ref|YP_001698846.1| hypothetical protein Bsph_3207 [Lysinibacillus sphaericus C3-41]
 gi|168993176|gb|ACA40716.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 161

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 8  DYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +Y +  L+Y     D P      I  ++E   +SE +L K+L  L KAGIV +V G +GG
Sbjct: 3  EYALHSLVYLI---DVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSGVKGG 59

Query: 64 VRLCRPADQITILDVVKATEESFFVAEC 91
           RL +  + I+  DVVKA E    + +C
Sbjct: 60 YRLSKRPEDISFWDVVKAVEGESPIFQC 87


>gi|103486976|ref|YP_616537.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977053|gb|ABF53204.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 147

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR   + A H      +++ IAEA  I   FL  IL  + + G++ + RGR 
Sbjct: 2   LSQKTRYTIRAFQHLADHWGRGQVQLADIAEAQNIPPKFLTVILSEMAREGLLISQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG +L  P   I+  D+V+ T  S  +  C A     H  +C     C L S++ K  + 
Sbjct: 62  GGYQLALPPVDISYGDLVRLTRGSLALVPCAARNAHEHCKNCLPEAECRLRSLMLKVRDE 121

Query: 118 FFDVLTQYSI 127
              +L + ++
Sbjct: 122 TASILDRITL 131


>gi|225568451|ref|ZP_03777476.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
           15053]
 gi|225162679|gb|EEG75298.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
           15053]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + V+   A+H+D  +   +  IAE   +SE +L +I++ L  A I+++VR
Sbjct: 1   MKISTKGIYALEVVADLALHSDAAHLESLKNIAERRKLSEKYLERIVKALKDAHIIKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115
           G  GG  + +   Q+T+ +V+KA E      +C        IDC    SC          
Sbjct: 61  GAYGGYCMAKEPQQLTVREVLKAVEGELAPVDCLTQESSCGIDCR---SCPTRDTWAALW 117

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
                V  + ++  +VR    I K
Sbjct: 118 QTIAGVADEVTVGDIVRAAEKIDK 141


>gi|157376007|ref|YP_001474607.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
          HAW-EB3]
 gi|157318381|gb|ABV37479.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
          HAW-EB3]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL   A +I++  VV+A +ES     C
Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRC 92


>gi|309774620|ref|ZP_07669645.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917651|gb|EFP63366.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 134

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MHL   TDY +R+++Y A          +++E   I + ++ K+   L +A I+E V G 
Sbjct: 1  MHLKISTDYAVRIVLYLAKKRQLVQS-KELSEQLHIPQGYVLKVASILKEAQILEAVTGI 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG RL +    I I DV++A E +  +  C 
Sbjct: 60 DGGFRLVKHPRDIPIYDVIRAMETTMQINRCL 91


>gi|166031726|ref|ZP_02234555.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
           27755]
 gi|166028179|gb|EDR46936.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
           27755]
          Length = 155

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+ +  YG+R ++  A      P  I  IA    +SE +L ++   L KAG+V+++RG
Sbjct: 4   LKLSTKGKYGLRAIIDLARFSEKEPVSIGCIATRQKLSERYLEQLFALLKKAGLVKSIRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R A +I++ DV++A E +     C A +  + C     C    V +K  ++ 
Sbjct: 64  ASGGYVLARDASEISVGDVLRALEGNLEPVRCAAFYSEEGCMASDECVTKYVWQKINDSI 123

Query: 119 FDVLTQYSIECLVRNRSSI 137
              + +  ++ LV+    +
Sbjct: 124 NKTVNEIKLDELVKESKEL 142


>gi|306820338|ref|ZP_07453977.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551667|gb|EFM39619.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 142

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y ++ +   AI + + P  +S I+E   +SEL+L +I   L K  IV+++RG
Sbjct: 1   MIISTKGRYALKAVFELAIADKNTPLPLSMISEKSGLSELYLEQIFSVLKKNNIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    I++ +V+K  E     A+C       C ++  C    +      A  
Sbjct: 61  AQGGYFLTKDTKDISVGEVIKPLEGDLSPAKCLEEDGY-CDMLDRCPTYMIWDNIKKAID 119

Query: 120 DVLTQYSIECLV 131
           DV+   ++  +V
Sbjct: 120 DVVDNTTLADMV 131


>gi|37520938|ref|NP_924315.1| hypothetical protein glr1369 [Gloeobacter violaceus PCC 7421]
 gi|35211933|dbj|BAC89310.1| glr1369 [Gloeobacter violaceus PCC 7421]
          Length = 159

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +T+++DYGI ++ + A H +      ++A    +    + KIL+ L + G++ + RG 
Sbjct: 2   IRITRQSDYGIVLVSHLAAHPERSFGAPELAAQVNLPLPIVRKILKLLAREGLLVSQRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCG-LTSVLR 112
           +GG  L  P   I++ DVV A E    + EC         +H+  CPL+     + +V++
Sbjct: 62  KGGYCLALPPAVISVADVVTALEGPIALTECIEDAPGGGCAHEAVCPLMPKWQRINAVIQ 121

Query: 113 KALN--AFFDVLTQYSIECLVRNRSS 136
           +AL+  +  +++  +  E  V + ++
Sbjct: 122 QALSGISLSELIAPWPQELPVLSHAA 147


>gi|332971653|gb|EGK10602.1| iron-sulfur cluster assembly transcription regulator IscR
          [Psychrobacter sp. 1501(2011)]
          Length = 175

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R  Y +  L+  AI +   +    +S IA+   IS  +L ++   L KAG+V + 
Sbjct: 1  MRLTTRGRYAVTALLDLAIQDGDSSSAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEES 85
          RG  GG  L +P ++I ++ ++ A +ES
Sbjct: 61 RGASGGYHLAKPLNEIDVMTIITAVDES 88


>gi|295982422|pdb|3LWF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982423|pdb|3LWF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982424|pdb|3LWF|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982425|pdb|3LWF|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
          Length = 159

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG  
Sbjct: 22  ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAH 81

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L    ++IT  D+++  E    + E     +             +  +  NA  DV
Sbjct: 82  GGYVLNGDPEKITAGDIIRTLEGPIVLVESXEDEE--------AAQRELWTRXRNAVRDV 133

Query: 122 LTQYSIECLVRNRSS 136
           L Q ++  L+++ + 
Sbjct: 134 LDQTTLSDLLKHSTD 148


>gi|144899516|emb|CAM76380.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  + H+   P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLSTKGRYAVMAMVDLSSHSQGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG  L RPA Q+ I D++ A +E      C       C
Sbjct: 61  PGGGYLLSRPAVQMRISDIILAVDEPIQTTRCSPGSPAGC 100


>gi|15643333|ref|NP_228377.1| hypothetical protein TM0567 [Thermotoga maritima MSB8]
 gi|170288170|ref|YP_001738408.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281411786|ref|YP_003345865.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila
           RKU-10]
 gi|4981083|gb|AAD35652.1|AE001731_9 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|170175673|gb|ACB08725.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
 gi|281372889|gb|ADA66451.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
           naphthophila RKU-10]
          Length = 137

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRIS--QIAEAC--CISELFLFKILQPLVKAGIVETVRG 59
           T R++Y +R+++  A   +Y N +S  +I E     +   F  KIL  L KAG+V+T RG
Sbjct: 3   TMRSEYALRLMIVMA--KEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
           + GG  L RP  +I + ++V       F+ +  +    D   CP    C + ++ ++  N
Sbjct: 61  KSGGYMLSRPPKEIKVSEIV-------FLLDRKSKVFFDMPGCPDELDCVIRALWKRVEN 113

Query: 117 AFFDVLTQYSIECLVRNRSS 136
               +L+  ++E LVR +  
Sbjct: 114 EIEKILSGVTLEDLVREQEE 133


>gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly transcription factor
           [Janthinobacterium sp. Marseille]
 gi|151281667|gb|ABR90077.1| iron-sulfur cluster assembly transcription factor
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A+ +T+ D++ A +E     +C        P     G  +T  L   LNA
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120

Query: 118 -FFDVLTQYSIECLV 131
              D L   S++ LV
Sbjct: 121 KMVDYLDSVSLKDLV 135


>gi|307297855|ref|ZP_07577661.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306917115|gb|EFN47497.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57
           M  T ++ Y +R L   A    +  +++S  +I +   I   FL KI   L +AGI++ V
Sbjct: 1   MGFTLKSSYALRALYKMAKSTREGKDKLSLVEIVQGNEIPRDFLEKIFGELRQAGIIKAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG  L RPA++I + DV+   ++      C   +   C    +C +  V  K  NA
Sbjct: 61  RGRYGGYCLARPANEILLRDVILKLDKPMNSYPCLQQNG-KCLEDPNCTVKYVWFKLYNA 119

Query: 118 FFDVLTQYSIECLV 131
               L   ++E L+
Sbjct: 120 MMRELGSMTLENLL 133


>gi|299538065|ref|ZP_07051350.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298726267|gb|EFI66857.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++   +    +  +  +AE   +S  +L KIL  LVKAG++E+  G
Sbjct: 2   MKYSKATNYALHTMVFLTRNPKGKSMSVESLAEIQKLSPTYLSKILTKLVKAGLIESNPG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+ +   +I+ LDV+ A E    +  C + H  D      C +  V+  A N   
Sbjct: 62  VNGGYRISKRPQEISFLDVIYAIEGQTSLFSCSSEHN-DSFHHQGCLIEQVMVDAENNMK 120

Query: 120 DVLTQ 124
           + L +
Sbjct: 121 EELNK 125


>gi|253999837|ref|YP_003051900.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
           SIP3-4]
 gi|253986516|gb|ACT51373.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           SIP3-4]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD G+R LMY +   H    + I+++A+   +    L K++  L K G ++  R
Sbjct: 5   MQLTKFTDLGLRALMYVSQSTHTRMVS-ITELAQQLNVPRNHLIKVVTFLNKTGWIQATR 63

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG+RL      +++  VV+  E    + +C    +  CPL GSCGL  VL ++L+ F
Sbjct: 64  GPGGGLRLGMDPASLSLGLVVRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVF 120

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L  Y++  +    +S
Sbjct: 121 YRHLDTYTLADVTPKHTS 138


>gi|218672764|ref|ZP_03522433.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 166

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ L  AGI++TV G RGG RL +P ++I++LD++ A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKPPEEISLLDILLAVE 84


>gi|291532767|emb|CBL05880.1| transcriptional regulator, BadM/Rrf2 family [Megamonas hypermegale
           ART12/1]
          Length = 156

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++   ++N   P  +  IA    IS  ++ +I+  L+KA +V++VRG
Sbjct: 1   MKVSTKGRYALRTMIDLTVNNTGNPIPLKDIATRQNISLKYMEQIISLLIKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116
             GG  L + + Q T  D+++A E       C      +C     C +      L K +N
Sbjct: 61  NNGGYLLAKSSMQYTAGDILRAAEGDMAPIACIEKDHCNCNRADYCSVLPFWLGLNKVIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 GYLDSVT 127


>gi|148653426|ref|YP_001280519.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
          PRwf-1]
 gi|148572510|gb|ABQ94569.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
          PRwf-1]
          Length = 173

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R  Y +  L+  AI + D  N +S   IA+   IS  +L ++   L KAG+V + 
Sbjct: 1  MRLTTRGRYAVTALLDLAIQDGDSTNAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEES 85
          RG  GG  L +P   I ++ ++ A +ES
Sbjct: 61 RGASGGYHLAKPLADIDVMTIITAVDES 88


>gi|308187781|ref|YP_003931912.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
 gi|308058291|gb|ADO10463.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
          Length = 165

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + +D I++ +V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKASDTISVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117

Query: 119 FDVLTQYSIECLVRNR 134
            D L   ++  LV N+
Sbjct: 118 SDFLNNITLAELVNNQ 133


>gi|160943772|ref|ZP_02091003.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444946|gb|EDP21949.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
           M21/2]
          Length = 189

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 33  MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 92

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG RL +     T  ++++A E S     C  S   +CP+   C      + L + +N
Sbjct: 93  SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 152

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 153 QYIDSVT 159


>gi|158424803|ref|YP_001526095.1| hypothetical protein AZC_3179 [Azorhizobium caulinodans ORS 571]
 gi|158331692|dbj|BAF89177.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 148

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++  ++ A +     N++++IAEA  I + FL  IL  L  AG + + +G+ 
Sbjct: 2   LTKKGKYGLKAAVHLARLGPGESNQVAEIAEANQIPKKFLDVILGELRNAGFLSSKKGKT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG +L +  + I + D+++A +       C + +      DC  V  C +  ++ K  +A
Sbjct: 62  GGYKLAKLPEDIIVGDLIRALDGPLAPIPCASRNAFVPCDDCD-VEHCEVRRLMVKVRDA 120

Query: 118 FFDVLTQYSI 127
              VL  Y++
Sbjct: 121 MGTVLDTYTL 130


>gi|149177719|ref|ZP_01856319.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
 gi|148843369|gb|EDL57732.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
          Length = 157

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++  +Y +R +++ A     P    QIA+A  + + +L K+LQ L ++ +V + RG  GG
Sbjct: 3   SQTVEYALRAIVHLADQAPNPCTTEQIAKATKVPQAYLSKVLQSLRQSSVVHSQRGIGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPLVGSCGLTSVLRKALNAFF 119
           + L +  +++++L+VV A +    +  C      H  + CPL     L   +R+   AF 
Sbjct: 63  ISLVKTPEELSLLEVVNAVDPICRIKTCPLGLKGHGANLCPLHRK--LDDAMRETETAFA 120

Query: 120 DV 121
           + 
Sbjct: 121 ET 122


>gi|145299544|ref|YP_001142385.1| ISC operon transcriptional regulator IscR [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142852316|gb|ABO90637.1| isc operon transcriptional regulator IscR [Aeromonas salmonicida
          subsp. salmonicida A449]
          Length = 167

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG RL    D I++  V+ A +ES    +C  
Sbjct: 61 PGGGYRLGLTPDAISVGQVITAVDESVDATKCLG 94


>gi|242278840|ref|YP_002990969.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242121734|gb|ACS79430.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R+ YG R+L+  A+H++    P++ S   E   IS  +L KIL+ L ++G ++  
Sbjct: 1   MKLTTRSRYGARLLLDIALHSENGPVPSKDSARREN--ISLKYLEKILKILKESGYIKGK 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L    ++I++  + +A E    + +C       C     C   S+   A  A
Sbjct: 59  RGPNGGNVLTMAPEEISLGKLTEALEGEDKILDCDGDMTT-CTRAAVCLRRSIWDDANQA 117

Query: 118 FFDVLTQYSIECLVRN 133
            + +L  Y++  L+++
Sbjct: 118 MYKMLDSYTLADLIKD 133


>gi|298492262|ref|YP_003722439.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298234180|gb|ADI65316.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708]
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ ++ Y I  L+  A H +   P +I QIA    I + +L ++L  L + GIV++ R
Sbjct: 1   MELSCKSQYAILALLEMATHYESGEPMQIRQIAAQQDIPDRYLEQLLATLRRGGIVKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +I++ ++++  E              +   V S  +  + ++A  A 
Sbjct: 61  GSKGGYLLAREPWKISVFEILECLEGLDIKP---GEDDTNSKSVDSSIVDEIWQEARQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL ++S++ L + R S +++
Sbjct: 118 NAVLQKHSLQALCQERDSRRQL 139


>gi|296447558|ref|ZP_06889480.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254946|gb|EFH02051.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           LTK+  YG++ ++Y A     P R   ++ IA A  I + FL  IL  L  AG V + +G
Sbjct: 2   LTKKAKYGLKAMVYLAGFE--PGRTALVADIATANQIPKKFLDAILGELRNAGFVHSKKG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKA 114
           + GG  L RP + I +  V++  +      +C AS  +     DC     C +  V+ +A
Sbjct: 60  KGGGYTLARPPEDIRVGAVIRVLDGPLAPIQC-ASRTVYRRCDDCENEALCTVRLVMVEA 118

Query: 115 LNAFFDVLTQYSI 127
            +A  +VL   ++
Sbjct: 119 RDAIANVLDNRTL 131


>gi|134095421|ref|YP_001100496.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Herminiimonas arsenicoxydans]
 gi|133739324|emb|CAL62374.1| Iron-sulfur cluster assembly transcription factor IscR
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A+ +T+ D++ A +E     +C        P     G  +T  L   LNA
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120

Query: 118 -FFDVLTQYSIECLV 131
              D L   S++ LV
Sbjct: 121 KMVDYLDSVSLKDLV 135


>gi|53804893|ref|YP_113471.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53758654|gb|AAU92945.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDY I +L   A   +     +++A+   I+     KIL+ L +AGIV + RG 
Sbjct: 2   LRISKLTDYAIILLDQMARAGEQTFAAAELADQTSIAMPTTSKILKALARAGIVTSTRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG  L +  +  ++  ++ A E    + EC A   + C    SC + S       A   
Sbjct: 62  RGGYALAQKPEHTSVARIIDAIEGPIALTECSAEQAL-CQQSSSCDVRSHWNVINRAVQT 120

Query: 121 VLTQYSIECLVRNRSS 136
            L   S+  ++R  S+
Sbjct: 121 TLESVSLADMIRPVSA 136


>gi|327439663|dbj|BAK16028.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 139

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A H  + P  + QIA    +SE +L +++ PL  AG+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIELAKHYGEGPIPLRQIAADKDLSEAYLEQLVSPLRNAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L    ++I+  DV++  E
Sbjct: 61 AYGGYMLAHKPNEISAADVIRVLE 84


>gi|238916580|ref|YP_002930097.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
 gi|238871940|gb|ACR71650.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
          Length = 143

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +RV++  A HN  +Y P  +  IA    ISE +L  I+  L K   + ++
Sbjct: 1   MKISTKGRYALRVMIDLAEHNTGEYIP--LMDIARRQDISEKYLEAIVATLSKNDFLISL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKA 114
           RG+ GG +L R  +  ++L ++  TE S     C       CP V  C    +     K 
Sbjct: 59  RGKGGGYKLARNPEDYSVLSILLVTEGSLAPVACLEKKPNRCPKVAECKTLQMWENFEKL 118

Query: 115 LNAFFDVLT 123
           +N +F  +T
Sbjct: 119 VNDYFSNIT 127


>gi|239637568|ref|ZP_04678540.1| Rrf2 family protein [Staphylococcus warneri L37603]
 gi|239596786|gb|EEQ79311.1| Rrf2 family protein [Staphylococcus warneri L37603]
          Length = 140

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESE 96


>gi|213962009|ref|ZP_03390274.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
 gi|213955362|gb|EEB66679.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
          Length = 145

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y A+H     R++   IAEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLALHASPTKRLAPKDIAEALHIPTSFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L        +++VVK   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLTDEEKAAPLMNVVKQIGEAEKFTSCAMGFK-ECSSEKPCPLHTSVQPFRDNFMR 120

Query: 121 VLTQYSIECLVR 132
            LT  SI    +
Sbjct: 121 ELTNNSIASFAQ 132


>gi|229098964|ref|ZP_04229899.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|229105131|ref|ZP_04235782.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
 gi|229117993|ref|ZP_04247353.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228665442|gb|EEL20924.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228678312|gb|EEL32538.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
 gi|228684462|gb|EEL38405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 151

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           +GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 68  KGGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151


>gi|152978539|ref|YP_001344168.1| BadM/Rrf2 family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840262|gb|ABR74233.1| transcriptional regulator, BadM/Rrf2 family [Actinobacillus
           succinogenes 130Z]
          Length = 154

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+   + P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALFGTNGPVTLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    D+I+I  ++ A  E+  V +C    K +C     C   S+  +  +   
Sbjct: 61  PGGGYQLGHSMDKISIGMIIAAVNENIAVTKCLG--KGNCQNGTECLTHSLWAELSHRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV+   S +K
Sbjct: 119 DFLDKITLAELVKKHHSKQK 138


>gi|307132078|ref|YP_003884094.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
           3937]
 gi|306529607|gb|ADM99537.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
           3937]
          Length = 164

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV N+
Sbjct: 119 EFLNNITLDELVNNK 133


>gi|78222091|ref|YP_383838.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78193346|gb|ABB31113.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 142

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  ++H++  P  +  IA    I   +L ++   L +  IVE+VRG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLHSEGRPVSLKDIALREDIPLNYLEQLFNRLRRGAIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R +  I + ++V   EE      C    K  C    +C    +  +L + + 
Sbjct: 61  PGGGYLLARESSAIRVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHNVWEMLGERIR 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
            F D +T   +    R R  
Sbjct: 121 TFLDSITLEDLVIEARGRGG 140


>gi|323485653|ref|ZP_08090991.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
           WAL-14163]
 gi|323691728|ref|ZP_08105988.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
           WAL-14673]
 gi|323401003|gb|EGA93363.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
           WAL-14163]
 gi|323504206|gb|EGB20008.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
           WAL-14673]
          Length = 138

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L   +    Y     ++AE   + + F +KIL+ L KAGIV+  RG 
Sbjct: 1   MLITRETDYALRILRTLSDGKSYT--AGELAERESLPQKFAYKILKKLEKAGIVQITRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG RL       T+  +++A E +  +  C  +    C   G     C + + L K  N
Sbjct: 59  SGGCRLGCDLRTATLYQLIEAVETNARLTSCM-TPGYQCEWRGRYGSPCTIHTQLAKVQN 117

Query: 117 A 117
           A
Sbjct: 118 A 118


>gi|254515564|ref|ZP_05127624.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR5-3]
 gi|219675286|gb|EED31652.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR5-3]
          Length = 160

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P R++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQNLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A+ I++ +V+ A  E      C    K DC    +C    +     +   
Sbjct: 61  PGGGYRLKRGAEDISVAEVISAVNEDTDATRCRG--KGDCQEGDTCLTHHLWMDLSDRIR 118

Query: 120 DVLTQYSIECLVRNRS 135
           D LT  S+  LV  R 
Sbjct: 119 DFLTDISLADLVARRE 134


>gi|330683915|gb|EGG95683.1| HTH-type transcriptional regulator CymR [Staphylococcus
          epidermidis VCU121]
          Length = 140

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESE 96


>gi|37521489|ref|NP_924866.1| hypothetical protein glr1920 [Gloeobacter violaceus PCC 7421]
 gi|35212486|dbj|BAC89861.1| glr1920 [Gloeobacter violaceus PCC 7421]
          Length = 148

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+ R  Y ++ ++   IH +D P  I QIA    IS+ FL ++L  L ++G V +VRG
Sbjct: 2   LKLSTRGHYSVKAMLDLTIHRHDPPQPIRQIARRQNISKHFLEQLLILLRQSGFVRSVRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   QIT+ ++++A  +                   +  L S + +++ A  
Sbjct: 62  VQGGYVLARLPAQITLGEILRAVGDGMAPLGRIERDGTQAEDWVTMALWSRVHRSVEAAL 121

Query: 120 DVLTQYSIECLVRNRSS 136
           D +T   +    R+R +
Sbjct: 122 DRITLEDLYHDARSRQA 138


>gi|89896939|ref|YP_520426.1| hypothetical protein DSY4193 [Desulfitobacterium hafniense Y51]
 gi|89336387|dbj|BAE85982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 147

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  A+H+   +  +S IAE   ISE +L ++   L KAGI+ +V+G
Sbjct: 1  MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
           +GG  L   A +I +  +++  E    VA
Sbjct: 61 AQGGYVLADRAAEIKVGTILRVLEGDLSVA 90


>gi|77464012|ref|YP_353516.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462857|ref|YP_001043971.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558886|ref|ZP_08413208.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77388430|gb|ABA79615.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104521|gb|ABN77199.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276598|gb|EGJ21913.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 155

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     N +  +AE      IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L RPA+ I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARPAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 FFDV-LTQYSIECLVRN 133
              V L Q  +  +++N
Sbjct: 121 HVYVFLHQTRLSDIIKN 137


>gi|319948207|ref|ZP_08022366.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
 gi|319438142|gb|EFV93103.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
          Length = 160

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRI--------SQIAEACCISELFLFKILQPLVKA 51
          M +T ++DY +R L+   A  +D P R          ++     I   FL  IL  L +A
Sbjct: 1  MRVTAKSDYALRALVELAAARSDDPARAPRDNPVSAEELGRLQDIPHGFLQAILSDLRRA 60

Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          G+V + RG+ GG  L R AD+IT+ DV++A +
Sbjct: 61 GLVASRRGKTGGWFLGRDADEITVADVMRAVD 92


>gi|325107421|ref|YP_004268489.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Planctomyces brasiliensis DSM 5305]
 gi|324967689|gb|ADY58467.1| transcriptional regulator, BadM/Rrf2 family [Planctomyces
           brasiliensis DSM 5305]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R ++  A   D P     IA        +L +++Q L  AG+V++  G  G
Sbjct: 2   LSKTAEYALRAVVLLASQPDKPFSADVIAGKTKAPRRYLTRVMQDLAAAGLVQSRPGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101
           G  + +  D ++ILDV+ A +    +  C     SH   CPL
Sbjct: 62  GYEMAKGIDAVSILDVINAVDPVERIRSCPLGLKSHTELCPL 103


>gi|229019725|ref|ZP_04176531.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229025951|ref|ZP_04182341.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228735352|gb|EEL85957.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228741570|gb|EEL91764.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 151

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           +GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 68  KGGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151


>gi|239994262|ref|ZP_04714786.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 161

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
             GG  L R A +I I +V++A +ES     C    + DC     C LT  L + L+   
Sbjct: 61  PGGGYLLGREASKIAIGEVIRAVDESIDATRCQG--QADCQGGDRC-LTHSLWQDLSDRI 117

Query: 117 -AFFDVLT 123
            AF + +T
Sbjct: 118 AAFLNSIT 125


>gi|170743400|ref|YP_001772055.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168197674|gb|ACA19621.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
           4-46]
          Length = 150

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ L++  A+       ++++A A  I + FL  IL  L  AG+V + +G  
Sbjct: 2   LTNKGKYGLKALVHLAALPPGTRIGVAEVAAANNIPKKFLDAILGELRNAGLVHSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RP ++I +   V+  +       C +        DCP  G+C +  V+ +  N+
Sbjct: 62  GGYALARPPEEIRVGHAVRVLDGPLAPVPCASRTAYRPCEDCPDEGACAVRLVMLEVRNS 121

Query: 118 FFDVLTQYSI 127
              VL   ++
Sbjct: 122 IAGVLDTLTL 131


>gi|294792716|ref|ZP_06757863.1| iron-sulfur cluster assembly transcription factor IscR
          [Veillonella sp. 6_1_27]
 gi|294794467|ref|ZP_06759603.1| iron-sulfur cluster assembly transcription factor IscR
          [Veillonella sp. 3_1_44]
 gi|294454797|gb|EFG23170.1| iron-sulfur cluster assembly transcription factor IscR
          [Veillonella sp. 3_1_44]
 gi|294456615|gb|EFG24978.1| iron-sulfur cluster assembly transcription factor IscR
          [Veillonella sp. 6_1_27]
          Length = 149

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y + VL+       D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1  MRISTKGRYALMVLIDLVEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
          + GG RL +   + TI++++ ATEES  +
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAI 89


>gi|125974067|ref|YP_001037977.1| BadM/Rrf2 family transcriptional regulator [Clostridium
          thermocellum ATCC 27405]
 gi|125714292|gb|ABN52784.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum ATCC 27405]
          Length = 151

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          + +Y   IS I+E   IS++FL ++   L KA IV + +G +GG +L R   QIT+LDV+
Sbjct: 26 NGEYITVIS-ISEKLGISKIFLEQVFSSLKKAKIVSSTKGVQGGYQLTRTPSQITVLDVL 84

Query: 80 KATEESFF 87
           + E S F
Sbjct: 85 LSVEVSLF 92


>gi|303228774|ref|ZP_07315592.1| putative HTH-type transcriptional regulator CymR [Veillonella
          atypica ACS-134-V-Col7a]
 gi|303230469|ref|ZP_07317228.1| putative HTH-type transcriptional regulator CymR [Veillonella
          atypica ACS-049-V-Sch6]
 gi|302514835|gb|EFL56818.1| putative HTH-type transcriptional regulator CymR [Veillonella
          atypica ACS-049-V-Sch6]
 gi|302516573|gb|EFL58497.1| putative HTH-type transcriptional regulator CymR [Veillonella
          atypica ACS-134-V-Col7a]
          Length = 149

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y + VL+  A      P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1  MRISTKGRYALMVLIDLAEQGQGKPVSLRSVAERQGISEKYLEGIVARLGAASLVDSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
          + GG RL +   + TI++++ ATEES  +
Sbjct: 61 KYGGYRLSKKPSEYTIIEILMATEESMAI 89


>gi|298241400|ref|ZP_06965207.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
 gi|297554454|gb|EFH88318.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
          racemifer DSM 44963]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  ++ T+Y +  ++Y  A+       + Q+AE   +S  +L KIL  LVKAG++E+  G
Sbjct: 1  MKYSQATNYALHTMLYLVALPLGKTVGVQQLAELQGLSPTYLSKILTKLVKAGMIESTPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    ++ L+V+ A E +  +  C
Sbjct: 61 INGGYKLTRNKADLSFLEVIHAIEGTASLFHC 92


>gi|295688500|ref|YP_003592193.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430403|gb|ADG09575.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A  N       ++AE       FL  IL  L + G++ + RG+ G
Sbjct: 2   LSQKARYALRAMIELARENGQVT-AGELAERADAPRKFLEAILLSLSREGLIISRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L R ADQI+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYVLGRTADQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDIATCALREALLRARDAT 120

Query: 119 FDVLTQYSI 127
             VL  YS+
Sbjct: 121 AAVLEGYSL 129


>gi|237744245|ref|ZP_04574726.1| RRF2 family protein [Fusobacterium sp. 7_1]
 gi|256027909|ref|ZP_05441743.1| RRF2 family protein [Fusobacterium sp. D11]
 gi|260494171|ref|ZP_05814302.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_33]
 gi|289765858|ref|ZP_06525236.1| RRF2 family protein [Fusobacterium sp. D11]
 gi|229431474|gb|EEO41686.1| RRF2 family protein [Fusobacterium sp. 7_1]
 gi|260198317|gb|EEW95833.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_33]
 gi|289717413|gb|EFD81425.1| RRF2 family protein [Fusobacterium sp. D11]
          Length = 143

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKI-DCPLVGSCGLTSVLRKAL 115
           G  GG +L    ++I +  + +  ++   V +C      K+ +C   G CG T +  K  
Sbjct: 61  GPTGGYKLAIKPEEIDLYMIYRILDDEEKVIDCNEMGEGKVHNCSEAG-CGDTCIWSKLD 119

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
           NA   +L++ S++  + N   I++
Sbjct: 120 NAMTKILSETSLQDFINNGKRIQE 143


>gi|228908509|ref|ZP_04072350.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|228851156|gb|EEM95969.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +K T+Y +  +++ A     PN+   +  +AE   +S  +L KIL  L K G++ + 
Sbjct: 1   MKYSKATNYALHTMLFLA--KATPNKLVSVHHLAEMQNVSPTYLSKILTKLTKEGMIHSS 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G +GG  L    + I+ LD++ A E    + +C    K  C
Sbjct: 59  SGPKGGYSLSNKWEDISFLDIIHAIEGKTSLFDCCLHDKPGC 100


>gi|332992276|gb|AEF02331.1| BadM/Rrf2 family transcriptional regulator [Alteromonas sp. SN2]
          Length = 161

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSTRGPVPLADISERQAISLSYLEQLFSRLRKNQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R A  I+I +V++A +ES     C    + DC     C    L   L   ++
Sbjct: 61  PGGGYLLGRDAANISIGEVIRAVDESVDATRC--QGQADCQSGDRCLTHSLWQYLSDRIS 118

Query: 117 AFFDVLT 123
           +F + +T
Sbjct: 119 SFLNDIT 125


>gi|325000811|ref|ZP_08121923.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia sp.
          P1]
          Length = 158

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 6  RTDYGIRVLMYCAI--HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R    ++ ++Y AI    D P   S Q+AEA   +   + K+L PL   G++ + +GR G
Sbjct: 15 RFSSALQAMLYLAIAAERDEPTTSSAQLAEALGTNPSLVRKLLVPLGAGGLIVSTKGRTG 74

Query: 63 GVRLCRPADQITILDVVK 80
          G RL RPA++IT+ ++ +
Sbjct: 75 GTRLSRPAERITLAEIYR 92


>gi|256420420|ref|YP_003121073.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
          DSM 2588]
 gi|256035328|gb|ACU58872.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga
          pinensis DSM 2588]
          Length = 165

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L K  +Y I  + Y   +  D    I+ +A    ISE +L KI   L K G+V +  G +
Sbjct: 4  LGKGVEYAIHSMYYLVDVSRDSAMTIADMATFQNISESYLAKIFTRLQKGGLVRSALGVK 63

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L RPA++I+  D+  A E    + EC
Sbjct: 64 GGYVLARPAEEISFWDIAVAVEGRVSLFEC 93


>gi|160901533|ref|YP_001567114.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359177|gb|ABX30791.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
           SJ95]
          Length = 150

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGI 53
           M LT ++ Y IR L  MY   + +   +     I++IAE+  +S+ FL KI   L KA I
Sbjct: 1   MSLTVKSCYAIRGLYEMYKLQNRNEDEKNTKISIAKIAESSGVSQEFLAKIFAELKKAKI 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V + +G+ GG    +  ++I + ++V+  E      +C +    +C    +C +  V ++
Sbjct: 61  VSSEKGKFGGFYFTKAPEKINLSEIVEVLEVPLNSYDCVSGG--ECENQKNCPVEFVWKR 118

Query: 114 ALNAFFDVLTQYSIECLVR 132
             +A F+ L++ +++ ++ 
Sbjct: 119 VQDAIFNELSKITLKDVIE 137


>gi|238060932|ref|ZP_04605641.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882743|gb|EEP71571.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 166

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 28/157 (17%)

Query: 1   MHLTKRTDYGIRVLMYCAI-------------HNDYPN----RISQIAEACCISELFLFK 43
           M+++ R+DY +R ++  A+             H   P     + + +AE+  I   FL  
Sbjct: 1   MYVSARSDYALRAMLAVAVAAADGGGTTGDLGHAPAPGGELVKAAALAESQAIPLSFLQG 60

Query: 44  ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF-----FVAECFASHKID 98
           IL  L +AG++ + RG  GG  L RPAD+I++ DV++A   S        AE    H + 
Sbjct: 61  ILLDLRRAGLLLSHRGAEGGYALTRPADEISVGDVLRAVGGSLTSVRGLPAEIAGYHGV- 119

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
                + GL  V      A   V+ + S+  L+  +S
Sbjct: 120 -----ATGLRDVWLAVDGAIATVVDRTSLADLLAAKS 151


>gi|221324215|ref|ZP_03605509.1| hypothetical protein BsubsS_15007 [Bacillus subtilis subsp.
          subtilis str. SMY]
          Length = 97

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          H + P  +  IA+   +SE +L +++ PL  AG+V+++RG  GG  L    D IT  D++
Sbjct: 8  HGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDII 67

Query: 80 KATEESFFVAECF 92
          +  E    + +C+
Sbjct: 68 RVLEGPISLLKCW 80


>gi|169333748|ref|ZP_02860941.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259597|gb|EDS73563.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 132

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L   TDY IR L+Y A  +   +R   I  A  I E +L+K++    + G VE VRG 
Sbjct: 1  MQLNITTDYAIRSLIYIAEKDREVSR-RDICSATKIPENYLYKLMAKFRECGYVEAVRGI 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG +L      I++ D+V   E S  +  C
Sbjct: 60 DGGYKLIVDPKDISVFDIVTLVEGSININRC 90


>gi|186685463|ref|YP_001868659.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467915|gb|ACC83716.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 156

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +S+I     I E +L +IL  L +AG+V++ RG +GG  L R   QIT+L++V   E
Sbjct: 39  PLTMSEITTKQPIPERYLEQILTNLRRAGVVQSQRGSKGGFVLAREPWQITLLEIVTLVE 98

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
                 E       + P +    +  V  +A  A  +VL +Y+++ L   R +
Sbjct: 99  -----GERKEKDTSNSPTLEKTLVYEVWEQANAAAIEVLGRYTLQDLCEERET 146


>gi|237744867|ref|ZP_04575348.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432096|gb|EEO42308.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 141

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     S+IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDKIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKALN 116
             GG +L R    IT+ D V+  E+   + +  C A          SC +    L K  N
Sbjct: 61  ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSCSIIFEALEKVEN 113

Query: 117 AFFDVLTQYSIECL 130
            F   L + + + L
Sbjct: 114 NFLKNLEKVNFQEL 127


>gi|33152205|ref|NP_873558.1| hypothetical protein HD1080 [Haemophilus ducreyi 35000HP]
 gi|33148427|gb|AAP95947.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 150

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV +VRG
Sbjct: 1  MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L +   +I++  V+ A  ES  V +C
Sbjct: 61 PGGGYQLGKSPAEISVGMVISAVSESLDVTKC 92


>gi|242373926|ref|ZP_04819500.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348480|gb|EES40082.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESE 96


>gi|313201811|ref|YP_004040469.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441127|gb|ADQ85233.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           MP688]
          Length = 154

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD G+R LMY +   H    + I+++A+   +    L K++  L K G ++  R
Sbjct: 5   MQLTKFTDLGLRALMYVSQSTHTRMVS-ITELAQQLNVPRNHLIKVVTFLNKTGWIQATR 63

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG+RL      +++  V++  E    + +C    +  CPL GSCGL  VL ++L+ F
Sbjct: 64  GPGGGLRLGMDPASLSLGLVIRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVF 120

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L  Y++  +    +S
Sbjct: 121 YRHLDTYTLADVTPKHTS 138


>gi|296313979|ref|ZP_06863920.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           polysaccharea ATCC 43768]
 gi|296839409|gb|EFH23347.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           polysaccharea ATCC 43768]
          Length = 149

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA +I I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAARINIAQIISAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRSS 136
            D L   +++ ++  +++
Sbjct: 118 NDYLGSVTLQSIIEQKTT 135


>gi|113970076|ref|YP_733869.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047317|ref|YP_737867.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
 gi|117920724|ref|YP_869916.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
 gi|126174611|ref|YP_001050760.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
          OS155]
 gi|153000907|ref|YP_001366588.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
          OS185]
 gi|160875615|ref|YP_001554931.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
          OS195]
 gi|217973136|ref|YP_002357887.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
          OS223]
 gi|304408985|ref|ZP_07390606.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS183]
 gi|307302988|ref|ZP_07582743.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          BA175]
 gi|113884760|gb|ABI38812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
 gi|113888759|gb|ABI42810.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
 gi|117613056|gb|ABK48510.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
          ANA-3]
 gi|125997816|gb|ABN61891.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS155]
 gi|151365525|gb|ABS08525.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS185]
 gi|160861137|gb|ABX49671.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS195]
 gi|217498271|gb|ACK46464.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS223]
 gi|304352806|gb|EFM17203.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          OS183]
 gi|306913348|gb|EFN43770.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
          BA175]
          Length = 153

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL   A+ I++  VV A +ES     C
Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRC 92


>gi|315267803|gb|ADT94656.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS678]
          Length = 173

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 21  MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG RL   A+ I++  VV A +ES     C
Sbjct: 81  PGGGYRLGLEANDISVGMVVHAVDESVDATRC 112


>gi|261400315|ref|ZP_05986440.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           lactamica ATCC 23970]
 gi|269209934|gb|EEZ76389.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           lactamica ATCC 23970]
          Length = 148

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  PA +I I  ++ A E+     +C +  K +C     C    L   L K +N
Sbjct: 61  PGGGYILAAPAARINIAQIISAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 119 DYLGSVTLQSI 129


>gi|59801064|ref|YP_207776.1| hypothetical protein NGO0637 [Neisseria gonorrhoeae FA 1090]
 gi|194098839|ref|YP_002001902.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999125|ref|ZP_04719049.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae 35/02]
 gi|240013967|ref|ZP_04720880.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae DGI18]
 gi|240016408|ref|ZP_04722948.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae FA6140]
 gi|240080528|ref|ZP_04725071.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae FA19]
 gi|240113104|ref|ZP_04727594.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae MS11]
 gi|240115860|ref|ZP_04729922.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID18]
 gi|240118158|ref|ZP_04732220.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID1]
 gi|240121535|ref|ZP_04734497.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID24-1]
 gi|240123706|ref|ZP_04736662.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID332]
 gi|240125897|ref|ZP_04738783.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128409|ref|ZP_04741070.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254493902|ref|ZP_05107073.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440325|ref|ZP_05794141.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae DGI2]
 gi|268594960|ref|ZP_06129127.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268596661|ref|ZP_06130828.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268599189|ref|ZP_06133356.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601536|ref|ZP_06135703.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603874|ref|ZP_06138041.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682338|ref|ZP_06149200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684495|ref|ZP_06151357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686806|ref|ZP_06153668.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043619|ref|ZP_06569335.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|293398928|ref|ZP_06643093.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           gonorrhoeae F62]
 gi|59717959|gb|AAW89364.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934129|gb|ACF29953.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae NCCP11945]
 gi|226512942|gb|EEH62287.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548349|gb|EEZ43767.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268550449|gb|EEZ45468.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268583320|gb|EEZ47996.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585667|gb|EEZ50343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588005|gb|EEZ52681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622622|gb|EEZ55022.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624779|gb|EEZ57179.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627090|gb|EEZ59490.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012082|gb|EFE04071.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|291610342|gb|EFF39452.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           gonorrhoeae F62]
 gi|317164418|gb|ADV07959.1| hypothetical protein NGTW08_0991 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 148

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  P  QI I  ++ A E+     +C +  K +C     C    L   L K +N
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 119 DYLGSVTLQSI 129


>gi|253681092|ref|ZP_04861895.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
 gi|253562941|gb|EES92387.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
          Length = 139

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+  DY +R+++Y C +          I+E   I   FL KIL+ L +AGIVE+ RG
Sbjct: 1  MKITQEVDYALRIVLYLCKLGFGEKIEAKFISEHENIPIRFLLKILRKLKQAGIVESFRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L +    I+  D++ A +   ++  C    K
Sbjct: 61 INGGYALNKYPSDISFKDIILAIDGPIYMNRCLYDPK 97


>gi|261867572|ref|YP_003255494.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293390585|ref|ZP_06634919.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412904|gb|ACX82275.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951119|gb|EFE01238.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 157

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ ND P  +S I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALYANDGPVSLSDISERQHISLSYLEQLFAKLRRHNVVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L     +I+I  ++ A  E+     C      +C     C   S+  K      
Sbjct: 61  PGGGYKLGFAPSEISIAMIITAVNENIETTACLGHG--NCSNGSECLTHSLWEKLSQRIE 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++E LV
Sbjct: 119 DFLSEITLEELV 130


>gi|126650609|ref|ZP_01722832.1| transcriptional regulator [Bacillus sp. B14905]
 gi|126592765|gb|EAZ86764.1| transcriptional regulator [Bacillus sp. B14905]
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +K T+Y +  +++     + P      +  +A+   +S  +L KIL  LVKAG++E+
Sbjct: 2   MKYSKATNYALHTMVFLT---NTPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIES 58

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             G  GG R+ +   +++ LDV+ A E    +  C + H+ D      C +  V+  A N
Sbjct: 59  NPGVNGGYRISKRPQEVSFLDVIYAIEGQTSLFSCSSDHE-DSFHNEGCLIEQVMVDAEN 117

Query: 117 AFFDVLTQ 124
              + L++
Sbjct: 118 NMKEELSK 125


>gi|318041035|ref|ZP_07972991.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
          CB0101]
          Length = 142

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M  + +T YG+  LM  A       R  +S+IA    I E +L +++  L ++GI+ ++R
Sbjct: 1  MGFSAKTTYGLLALMELADVAGSGERLQVSEIAARQAIPERYLEQMMTSLRRSGILRSIR 60

Query: 59 GRRGGVRLCRPADQITILDVV 79
          G RGG +L + ADQI + +V+
Sbjct: 61 GARGGYQLAKAADQILLSEVI 81


>gi|271966528|ref|YP_003340724.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270509703|gb|ACZ87981.1| transcriptional regulator protein-like protein [Streptosporangium
          roseum DSM 43021]
          Length = 154

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ RT Y +R ++  A   D P    +IA    I   F   IL  L +AG++ + RG 
Sbjct: 2  MRISARTQYALRAMVALAA-ADNPIHAERIAATQDIPRRFCDNILLQLRRAGLIHSQRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L  PA++IT+ DV++ +E
Sbjct: 61 DGGYWLAHPAEKITLADVIRVSE 83


>gi|194335942|ref|YP_002017736.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308419|gb|ACF43119.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 137

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  + Y A         + ++A+    S+ FL K +Q L +AGI  +V+G
Sbjct: 2   LQVSRKFEYGLHAVTYLATKGVGRVVTVKEMADEIGFSQEFLSKAMQSLKRAGIATSVQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  D+IT+ D+  A E    +  C  +    C +  SC     L        
Sbjct: 62  VKGGYTLGKTMDEITVADIAIAIEGKPHLVRCGVTPD-SCEIFSSCHHRGYLNNLQYKIQ 120

Query: 120 DVLTQYSIECLV 131
           ++LT  ++  L+
Sbjct: 121 ELLTATTLHSLL 132


>gi|160903152|ref|YP_001568733.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160360796|gb|ABX32410.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
           SJ95]
          Length = 156

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT ++ Y +R L   A+  +   +    IS+++E   I + FL KI   L  AGIV++
Sbjct: 1   MSLTVKSSYALRALFELAVLAEDEGKEKVPISELSERQNIPKDFLEKIFIELRDAGIVKS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           VRG+ GG  L +    + + ++++  ++     +C      +C L   C +  V ++  N
Sbjct: 61  VRGKFGGYALAKNPKDLRLSEIIQVLDKPLQSFDCIVG---ECSLEIECAVEFVWKRVNN 117

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
           +    L++ +++ ++     I KI
Sbjct: 118 SIMLELSKMTLQDIIDYGRKIAKI 141


>gi|114331239|ref|YP_747461.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
           eutropha C91]
 gi|114308253|gb|ABI59496.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
           C91]
          Length = 155

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  AI H   P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDIAIRHGGGPVALADISERQRISLSYLEQLFSKLRQRKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D++++ D++ A +E     +C    K +C     C    +  K     F
Sbjct: 61  PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWTKLNEIIF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   ++E LV  +S 
Sbjct: 119 DYLGNVTLERLVEEQSQ 135


>gi|302035787|ref|YP_003796109.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603851|emb|CBK40183.1| putative HTH-type transcriptional regulator, rrf2 family
           [Candidatus Nitrospira defluvii]
          Length = 150

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YGI   +  A+H+ + P     IA+   I   FL ++L  + KAG+V + RG
Sbjct: 1   MKVSLRATYGIIAAVDLALHHAEQPVCAKSIAKRQAIPARFLEQVLHAMKKAGVVASQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L R   ++++ D++ A E        E    H           L  +  +   A
Sbjct: 61  AQGGYVLSRKPSELSVADILDALEGPLLTTNGEGGPKHSSSRGAKQEALLAHIWDRVKRA 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              VL++ ++E L + + S+
Sbjct: 121 ELSVLSEVTVEELAKRQRSL 140


>gi|251792922|ref|YP_003007648.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter aphrophilus NJ8700]
 gi|247534315|gb|ACS97561.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter aphrophilus NJ8700]
          Length = 156

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI+ ND P  +S I+E   IS  +L ++   L +  IV++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAIYANDGPVSLSDISERQHISLSYLEQLFAKLRRNNIVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG +L    ++I+I  V+ A  E+    +C    K +C     C LT  L + L+   
Sbjct: 61  PGGGYKLGYTPNEISIGMVIAAVNENIETTKCLG--KGNCQNGAEC-LTHTLWEKLSLRI 117

Query: 119 FDVLTQYSIECLV 131
            D L + ++  LV
Sbjct: 118 ADFLNEITLAELV 130


>gi|170717785|ref|YP_001783506.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
          2336]
 gi|168825914|gb|ACA31285.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
          2336]
          Length = 135

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG +L    DQI+I  V+ A  E+  V +C  +   DC
Sbjct: 61 PGGGYQLGLSTDQISIGMVINAVNENINVTKCLGNG--DC 98


>gi|24373816|ref|NP_717859.1| Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|120598676|ref|YP_963250.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp.
          W3-18-1]
 gi|146293246|ref|YP_001183670.1| BadM/Rrf2 family transcriptional regulator [Shewanella
          putrefaciens CN-32]
 gi|24348214|gb|AAN55303.1|AE015668_4 Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|120558769|gb|ABM24696.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
          W3-18-1]
 gi|145564936|gb|ABP75871.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
          putrefaciens CN-32]
 gi|319426240|gb|ADV54314.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
          putrefaciens 200]
          Length = 153

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL   A+ I++  VV A +ES     C
Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRC 92


>gi|295094610|emb|CBK83701.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
           ART55/1]
          Length = 136

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ + +Y +RV+   AI++D    P  + +I +   +S+ +L  I++ L KA ++E  
Sbjct: 1   MVISSKGEYALRVMADLAINHDGRFIP--LKEIVQKEELSQKYLESIMRMLSKANLIEAA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G  GG RL +  ++ T+ ++++ TE       C  +  + C   G C    + +     
Sbjct: 59  SGHGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSAMTCDRSGQCYTLPIWQGLAEL 118

Query: 118 FFDVLTQYSIECLVRN 133
             D     ++  + RN
Sbjct: 119 IQDYFQGKTLADIARN 134


>gi|108805410|ref|YP_645347.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766653|gb|ABG05535.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 156

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           + L+    Y +R L+Y A  N    R++   I+    I    L ++L  L +A +V +  
Sbjct: 17  LELSSEGRYALRALIYLARVN---RRVTADTISADTGIPRRLLARVLAKLSRARLVRSSE 73

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG  L R  +QIT+ + V+A E  F V  C    +  C     C +     +   A 
Sbjct: 74  GRGGGSELARSPEQITLREAVEAIEGPFEVTRCIMEERA-CGTGAPCAMHEAWEEGQEAI 132

Query: 119 FDVLTQYSIECLV 131
            D L   ++   V
Sbjct: 133 LDYLQGQTLSEFV 145


>gi|330836544|ref|YP_004411185.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
 gi|329748447|gb|AEC01803.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
          Length = 146

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y +  L++ A+  D  + +S   I+E   IS  +L ++  PL +  I++  R
Sbjct: 1   MRISTRGRYSLEALLFIALVQDAESIVSAHLISEKTGISYGYLEQLFIPLKRTRIIKGSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVA---ECFASHKIDCPLVGSCGLTSVLRKAL 115
           G +GG R+    D+IT+ D++++ E S   +   +      I  P+       + L   +
Sbjct: 61  GAKGGYRIASDLDKITVGDILRSVENSLKDSSRPDSAVRQDISNPIPKVKETWAELHDTI 120

Query: 116 NAFFDVLT 123
           + F D LT
Sbjct: 121 SGFIDSLT 128


>gi|291300389|ref|YP_003511667.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569609|gb|ADD42574.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 162

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  T +   G+   ++  ++  + NR     S++A    +   +L K LQ L +AGI+ +
Sbjct: 1   MSRTMKMSEGVEWAIHSCLNLAWANRDAIPASRLAAYHELPPAYLNKQLQALCRAGILTS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCP---LVGSCGLTSV 110
             G RGG RL RP D I+ +DVV A E   ++F   E         P      +C ++  
Sbjct: 61  TTGPRGGFRLARPLDDISFMDVVTAIEGGDDAFACTEIRQRGPNGGPAENFPHTCAVSRT 120

Query: 111 LRKALNAFFDVLTQYSI 127
           +R A   +   L Q+++
Sbjct: 121 MRAAELTWRRELAQHTL 137


>gi|326404674|ref|YP_004284756.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051536|dbj|BAJ81874.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 152

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++ TDY + VL+  A           IA    I E  + K+L+ L ++G+V + RG  G
Sbjct: 1   MSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGAHG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKID------CPLVGSCGLTS-VLRKAL 115
           G RL RP   I I DV+ A +    +  C             CP+ G  G+ +  +  AL
Sbjct: 60  GYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGSCDSASLCPMAGRWGVVNDAISDAL 119

Query: 116 NAF 118
           NA 
Sbjct: 120 NAI 122


>gi|317051126|ref|YP_004112242.1| transcriptional regulator, Rrf2 family [Desulfurispirillum
          indicum S5]
 gi|316946210|gb|ADU65686.1| transcriptional regulator, Rrf2 family [Desulfurispirillum
          indicum S5]
          Length = 136

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          ++ +  YG+  ++Y A H D   +I  IA+   I + +L ++L  L K G VE+ RG  G
Sbjct: 4  VSSKGAYGLAAMLYLAQHADKLIQIRDIAKNGGIPQNYLEQLLVQLKKNGFVESTRGAGG 63

Query: 63 GVRLCRPADQITILDVVKATE 83
          G RL      ITI  +++A E
Sbjct: 64 GYRLAMEPKDITIYQILEALE 84


>gi|148555827|ref|YP_001263409.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501017|gb|ABQ69271.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 134

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY + V++  A  +    R++   +++   +      K++  L +AG++ + R
Sbjct: 1   MRLSSLADYAV-VMLSAAARHGAGERLTATLLSDETGVPLPTAQKLMGRLAQAGLLASAR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           G  GG RL R    I++ D+V+A E    +  C   H+ DC L  +C
Sbjct: 60  GTGGGFRLARDPGAISLADIVEAVEGPIAMTACVDDHRHDCGLESAC 106


>gi|304398596|ref|ZP_07380468.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304353807|gb|EFM18182.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 165

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + ++ I++ +V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKESNTISVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV N+
Sbjct: 118 SEFLNNITLAELVNNQ 133


>gi|229087063|ref|ZP_04219215.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
 gi|228696256|gb|EEL49089.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
          Length = 143

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           +GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 60  KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 119

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A  +VL   +++ LV N  S
Sbjct: 120 AMENVLANVTVQQLVTNLQS 139


>gi|312143964|ref|YP_003995410.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
 gi|311904615|gb|ADQ15056.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
          Length = 150

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A H +     I +I+E   ISE +L ++   L KA +V++VRG
Sbjct: 1   MKISTKGRYGLRALVDLAEHEEGKAIPIRKISERQDISEQYLEQLFATLRKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + I++ +++ A E      +C       C  V  C +  +  +  +A  
Sbjct: 61  AHGGYMLNHEPEDISVAEILTALEGPLVPVDCVVEENF-CNYVDRCVMHGLWEEMADAIN 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +++   ++  L+    + KK
Sbjct: 120 EIIENTTLADLLERAIAEKK 139


>gi|168186835|ref|ZP_02621470.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum C str. Eklund]
 gi|169295240|gb|EDS77373.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum C str. Eklund]
          Length = 131

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + + P  I  IA+   ISEL+L ++  PL KA +++++RG +GG  L +    I++ D++
Sbjct: 8   YGETPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRGAQGGYVLNKDPKDISVSDII 67

Query: 80  KATEESFFVAECFASHKID----CPLVGSCGLTSVLRKALNAFFDVLTQ 124
              E    ++ C  + + D    CP       T +L K +    D +T+
Sbjct: 68  NVLEGPIEISSCVDTGECDNMDICP-------TRLLWKKIKKSIDEVTE 109


>gi|154502553|ref|ZP_02039613.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
 gi|153796745|gb|EDN79165.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
          Length = 142

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y + + +  A+H   D    ++ IA+   +SE +L +I++ L +AG+V++VR
Sbjct: 1   MKMSTRGQYALEIAVDLALHLMPDRLESLNDIAKRRNLSEKYLERIMKLLKEAGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115
           G  GG  L +   +I++L+V++A E       C   +    ++C +   C   S   +  
Sbjct: 61  GAYGGYCLTKEPGEISVLEVLRAAEGQLAPVSCLVENTECGMECEI---CSTKSTWGEMW 117

Query: 116 NAFFDVLTQYSI 127
               D   + ++
Sbjct: 118 EQILDTAAEVTV 129


>gi|300087504|ref|YP_003758026.1| BadM/Rrf2 family transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527237|gb|ADJ25705.1| transcriptional regulator, BadM/Rrf2 family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 147

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG R L+  A  + D    I  IA    IS  +L  ++ PLV A ++++VRG
Sbjct: 1   MKLSTRARYGTRALLDLAQNYGDQVIPIKDIARRQQISLSYLEHLIGPLVDARLIQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
            +GG++L +  + I + +VV   E      EC  +  K D  L   C    +      A 
Sbjct: 61  AKGGLKLAKSPEAIKLSEVVSLLEGPIEPVECIHNPEKCDRSLF--CATRDIWDDMGRAI 118

Query: 119 FDVLTQYSIECLVRNRSS 136
            +VL Q ++  LV  + +
Sbjct: 119 TEVLGQTTLADLVSRQQA 136


>gi|160879964|ref|YP_001558932.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428630|gb|ABX42193.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           phytofermentans ISDg]
          Length = 143

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRVL+  A HN+     +  IA    ISE +L  I+  L K  ++ ++RG
Sbjct: 1   MKISTKGRYAIRVLIDLAEHNNGEFITLMDIAGRQEISEKYLEAIVSILSKNDLLISLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
           + GG +L +  +Q T+  +++ TE S     C      +C     C    +     K  N
Sbjct: 61  KGGGYKLAKAPEQYTVGSILRLTEGSLAPVSCLEKTPNNCTRATECRTLHMWEEFYKLTN 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
            +FD +T   I  LV+   S
Sbjct: 121 DYFDGIT---IADLVKKNDS 137


>gi|301167345|emb|CBW26927.1| putative DNA-binding protein [Bacteriovorax marinus SJ]
          Length = 179

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +R ++    H N  P R+ +I++   IS  +L ++ + L     V++VRG
Sbjct: 1  MRLTSKGRYAVRAMLDLTTHSNGNPVRLQEISQRQNISLHYLEQLFRKLRNGQAVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
            GG  L R  DQIT+ D+++   E+   A+
Sbjct: 61 PGGGYVLARSMDQITVKDILECVGENINPAK 91


>gi|291485160|dbj|BAI86235.1| hypothetical protein BSNT_03994 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 139

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 2  LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    D IT  D+++  E      E     +
Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEE 98


>gi|167856166|ref|ZP_02478905.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|219870330|ref|YP_002474705.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
           parasuis SH0165]
 gi|167852724|gb|EDS23999.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|219690534|gb|ACL31757.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
           parasuis SH0165]
          Length = 148

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H  D P  +  I++   IS  +L ++   L + G+V +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKDMPVSLVDISDRQAISLSYLEQLFAQLRREGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I +  ++ A  ES  V++C  +   +C     C   S+  +  N   
Sbjct: 61  PGGGYQLAKTPEEINVSLIIAAVNESVDVSKCKGN--GNCSNNSRCLTHSLWERLENQIE 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  LV   S
Sbjct: 119 QYLHTITLAELVEENS 134


>gi|120405372|ref|YP_955201.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958190|gb|ABM15195.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 158

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIELATADDGALVKTDDLAKAQGIPPQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L RPA  I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL Q S+
Sbjct: 119 RSVLEQTSV 127


>gi|309388970|gb|ADO76850.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium
           praevalens DSM 2228]
          Length = 148

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H +     I +I+E   ISE +L ++   L KA +V++VRG
Sbjct: 1   MRVSTKGRYGLRAMVDLAEHEEGEAIPIRKISERQDISEQYLEQLFATLRKAELVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L    + I++ D++   E      +C       C  +  C   GL   L  A+N
Sbjct: 61  AHGGYMLNHEPEDISVADIITTLEGPIAPVDCVIESDF-CNYIDKCVIHGLWEELADAIN 119

Query: 117 AFFDVLT 123
              + +T
Sbjct: 120 GVIENMT 126


>gi|229094650|ref|ZP_04225696.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228688732|gb|EEL42582.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
          Length = 168

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KAGIV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|254459294|ref|ZP_05072715.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
 gi|207083907|gb|EDZ61198.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
          Length = 133

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +     P     ++    I + FL KILQ L K GI+++ +G 
Sbjct: 1   MLITRASEYAILSLIVLS-KATSPMDSETLSNQLSIPKSFLAKILQSLAKKGILKSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG  L +    I++L V+ A E ++  V +C  S K DCP   +  C +   L K    
Sbjct: 60  NGGFTLLKDPKDISMLSVMSAVEGKAPAVFDCSPSQK-DCPSDRAELCSIWPFLNKLQGK 118

Query: 118 FFDVLTQYSIECLVR 132
             D L + S++ ++ 
Sbjct: 119 IDDFLAELSLDDILE 133


>gi|145219397|ref|YP_001130106.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205561|gb|ABP36604.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeovibrioides DSM 265]
          Length = 137

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++++ +YG+  + Y A+        + ++A     S+ FL K +Q L +AGI  + +G
Sbjct: 2   LQVSRKFEYGLHAVAYLAMKGSGEAVTVKEMARDIGFSQEFLAKAMQNLTRAGIASSAQG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   +IT+ D+  A E    +  C  +    C +  SC +   +    N+  
Sbjct: 62  VKGGYMLARLPSEITVADIGLAIEGEPHMVRCIVNAD-SCEIYSSCRMRGYIIGLQNSIQ 120

Query: 120 DVLTQYSIECLVR 132
            +L   ++  L++
Sbjct: 121 GLLASTTVATLLQ 133


>gi|307256986|ref|ZP_07538762.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261420|ref|ZP_07543093.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306864470|gb|EFM96377.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868877|gb|EFN00681.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 150

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    L   L + + 
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGS--GNCSKNSQCLTHHLWERLEEQIG 118

Query: 117 AFFDVLT 123
            F + +T
Sbjct: 119 VFLNTIT 125


>gi|298505456|gb|ADI84179.1| transcriptional regulator, Rrf2 family [Geobacter sulfurreducens
           KN400]
          Length = 153

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ ++Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKAMLYLAREQDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +P  +I++  +++  E      +C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAQPPREISMGRIIRILEGPLAPVQCVSETSYARCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVL 122
              +L
Sbjct: 122 MATIL 126


>gi|52144351|ref|YP_082476.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51977820|gb|AAU19370.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 168

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KAGIV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|296535637|ref|ZP_06897815.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
 gi|296264032|gb|EFH10479.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
          Length = 151

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          A+  + P  +++IA+A  +S  +L ++   L +AG+V++ RG  GG RL RPA+ I I  
Sbjct: 24 AVTRERPVSLAEIAQAQLLSVAYLEQLFARLRRAGLVDSARGPGGGYRLARPAEAIAIGT 83

Query: 78 VVKATEESFFVAEC 91
          +++A +E      C
Sbjct: 84 IIEAVDEPISATRC 97


>gi|167755758|ref|ZP_02427885.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
 gi|237734725|ref|ZP_04565206.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|167704697|gb|EDS19276.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
 gi|229382053|gb|EEO32144.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 146

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +    +  I +L+  A  ND  P +   I+++  +S+ +L KI++ LV AG++ +  G
Sbjct: 1  MKVKNSVEQAICLLIIIAHSNDEKPLKSYNISDSLGVSDSYLKKIIRQLVVAGLITSEAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          ++GGV L R  D+IT+LD+ +A E
Sbjct: 61 KKGGVCLSRKPDKITLLDIFEAIE 84


>gi|269216599|ref|ZP_06160453.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
 gi|269130128|gb|EEZ61210.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
          Length = 160

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +T +  Y +R++   A H      P  +  +A+   IS  +L ++ +PLVK+G++++V
Sbjct: 1   MLVTTKGRYAMRLMADVAHHFEKEGTPLSLRAVAQREGISMKYLEQLARPLVKSGLLKSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           RG+ GG  L  P+  I   D+++A E +            DC  +  C
Sbjct: 61  RGKGGGYVLAEPSAAIRAGDILRAAEGNVLPVSSCDGVTFDCARIADC 108


>gi|87309332|ref|ZP_01091468.1| conserved protein (RRF2 family protein) [Blastopirellula marina
          DSM 3645]
 gi|87287971|gb|EAQ79869.1| conserved protein (RRF2 family protein) [Blastopirellula marina
          DSM 3645]
          Length = 160

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L++   Y ++  +  A   +  P   S++A    + E FL ++L+ LV  GI+ + RG
Sbjct: 1  MKLSRTVAYALQATLQLAETDSSSPVPCSKLAAKGDMPERFLLQVLRNLVTHGILRSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKA 81
            GG  L RPA+QI++L++++A
Sbjct: 61 VDGGYTLVRPAEQISLLEIIEA 82


>gi|281356072|ref|ZP_06242565.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281317441|gb|EFB01462.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 145

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 5/121 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++L+ ++ YG+R+L+  A    +    ++ ++AE   IS+ ++ +I+  L  +G+V + R
Sbjct: 2   LNLSTKSRYGLRILLQLAQCRGSGRSCKVRELAEQQSISDAYVEQIMIALKGSGLVFSAR 61

Query: 59  GRRGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           GR GG  L R PAD IT+LDV++  E    +  C    +  C  +  C   +V ++   A
Sbjct: 62  GRNGGYLLGRVPAD-ITVLDVIELFEGRIDLVGCTGPEQ-RCARIAGCLSRTVWQRLSEA 119

Query: 118 F 118
           F
Sbjct: 120 F 120


>gi|126658452|ref|ZP_01729600.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece
          sp. CCY0110]
 gi|126620194|gb|EAZ90915.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece
          sp. CCY0110]
          Length = 147

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R+ Y ++ L+  ++  +Y P  +  IA+   +   +L K+L  + ++G+V ++RG
Sbjct: 1  MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIEMRRSGLVNSLRG 60

Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86
           +GG +L R   QI+   ILD V  T E  
Sbjct: 61 SQGGYQLARQPSQISLGEILDAVGDTIEPL 90


>gi|88813391|ref|ZP_01128628.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
           mobilis Nb-231]
 gi|88789357|gb|EAR20487.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
           mobilis Nb-231]
          Length = 155

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 16/147 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A+H N  P  ++ I++   IS  +L ++   L +A +V  VRG
Sbjct: 1   MKLSTKGRYAVTAMLDLALHENRGPVILADISQGQGISLSYLEQLFARLRRARLVTGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
             GG RL RPA  IT+ DV+ A +++    +    ++    L G+  LT  L   L+A  
Sbjct: 61  PGGGYRLARPAQVITVADVIVAVDDN---GDALGGYE--GKLNGAHCLTHDLWSELSAQI 115

Query: 118 --------FFDVLTQYSIECLVRNRSS 136
                     D+ ++ SI  L R  ++
Sbjct: 116 YDFLNGITLADLASESSIRVLARTETA 142


>gi|167758028|ref|ZP_02430155.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
 gi|167663925|gb|EDS08055.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
          Length = 166

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A+++   P  ++ +A    IS  +L ++   L KAG+V +++G
Sbjct: 20  MKISTKGRYGLRALVDLAVYSQGEPTALAMVAARQKISLNYLEQVFGQLRKAGLVRSIKG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDC 99
             GG  L +PA  IT+ ++++  E  F  V E      +D 
Sbjct: 80  PSGGYLLAKPAKDITVKEILEVLEGPFSIVGEDLDRSSLDA 120


>gi|229828909|ref|ZP_04454978.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
           14600]
 gi|229792072|gb|EEP28186.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
           14600]
          Length = 144

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A +N   P  I  IA    ISE +L +I+  L +AG V +VRG
Sbjct: 1   MKISTKGRYALRLMLDLAAYNTGEPISIKDIARRQAISEKYLEQIISVLNRAGYVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   + T+  + + TE S    E     K D           V RK   A  
Sbjct: 61  AGGGYLLTRDPKEYTVGMIFRLTEGSLAPVEGLEDGKPDLADHPELVTYDVYRKIYEAVN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+   ++  LV ++  +
Sbjct: 121 QVVDHITLADLVDHQRQL 138


>gi|172035368|ref|YP_001801869.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
 gi|171696822|gb|ACB49803.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
          Length = 153

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R+ Y ++ L+  ++  +Y P  +  IA+   +   +L K+L  + ++G+V ++RG
Sbjct: 7  MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIKMRRSGLVNSLRG 66

Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86
           +GG +L R   QI+   ILD V  T E  
Sbjct: 67 SQGGYQLARQPSQISLGQILDAVGDTIEPL 96


>gi|218441057|ref|YP_002379386.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Cyanothece sp. PCC 7424]
 gi|218173785|gb|ACK72518.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7424]
          Length = 151

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++L  + +Y +  L+  A   H  +P  +++I     I E +L +IL  L + G++++ R
Sbjct: 9   LNLPSKVEYALLALLEMASQSHLKHPLTVNEITAKQPIPERYLEQILATLRRGGLLKSQR 68

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R    IT+L++V   E +  V E      ++  L+          +A  A 
Sbjct: 69  GSKGGYVLAREPQDITLLEIVSIIEGNRQVKENTDLSTVEMKLIQDS-----WHQANQAA 123

Query: 119 FDVLTQYSIECLVRNRSS 136
             +L QY++  L + R S
Sbjct: 124 QSILEQYTLLDLCKQRES 141


>gi|329737377|gb|EGG73631.1| HTH-type transcriptional regulator CymR [Staphylococcus
          epidermidis VCU028]
          Length = 140

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  P++QIT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPSEQITAGDIIRLLEGPITFVESIDSE 96


>gi|319651668|ref|ZP_08005795.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
 gi|317396735|gb|EFV77446.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
          Length = 139

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +   +IT  D+++  E
Sbjct: 61 AYGGYILGKEPTKITAGDIIRVLE 84


>gi|262281617|ref|ZP_06059391.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262256943|gb|EEY75687.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 67

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4  MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61 RGGV 64
           GG+
Sbjct: 64 GGGI 67


>gi|224476724|ref|YP_002634330.1| hypothetical protein Sca_1238 [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222421331|emb|CAL28145.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 139

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PAD+I   D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPISFVESIDSE 96


>gi|328886610|emb|CCA59849.1| Rrf2 family transcriptional regulator [Streptomyces venezuelae
          ATCC 10712]
          Length = 160

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          G+   ++C +       P   +++AE   +S  +L K +Q L +AG+V +V+G+ GG  L
Sbjct: 6  GVEWALHCCVVLTAASRPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGKTGGYVL 65

Query: 67 CRPADQITILDVVKATE 83
           RPA +IT+LDVV+A +
Sbjct: 66 TRPAVEITLLDVVQAVD 82


>gi|310780203|ref|YP_003968535.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter
          polytropus DSM 2926]
 gi|309749526|gb|ADO84187.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter
          polytropus DSM 2926]
          Length = 140

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          T +  YG+  L+Y A + +    + ++AE   IS+ +L +I   L K+GI+ +V+G +GG
Sbjct: 4  TNKGHYGLIALIYMAGNIEKKVSVKEVAEKENISKRYLEQIFSALKKSGILISVKGSQGG 63

Query: 64 VRLCRPADQITILDVVKATEE 84
            L R   +I + DV++A E+
Sbjct: 64 YLLSRSPKEIKVGDVLRALED 84


>gi|88811720|ref|ZP_01126974.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
 gi|88791111|gb|EAR22224.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
          Length = 153

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 56/112 (50%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + + + TDYGI +L   A         +++A+   + +  + KIL+ L + GI+ + RG 
Sbjct: 2   IRINRETDYGISILTLMARRRRERFNAAELAQWRRLPQPIVSKILKHLARNGILISYRGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           +GG  L R  ++I++ D++ A E    + EC       C    +C +++  R
Sbjct: 62  QGGYALARSPEEISLADIIVALEGPISLTECVIGGADACQYGANCAVSARWR 113


>gi|84498351|ref|ZP_00997148.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
 gi|84381851|gb|EAP97734.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
          Length = 155

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ RTDY +R ++           P  +  +A+   +   FL +I+  L  AG+V + 
Sbjct: 1  MDISARTDYAVRAMLILGEAQQAESGPVSVETLAQRQSLPRKFLEEIVADLRTAGLVTST 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
          RG RGG  L RPA +  + DV +A +           H+
Sbjct: 61 RGARGGYSLARPATETVLGDVFRAVDGPLAEVRGLRPHE 99


>gi|237748047|ref|ZP_04578527.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379409|gb|EEO29500.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 144

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R  M   + N  D    +  +     IS  +L +I   L K+G++ +VR
Sbjct: 1   MKISTKGRYALR-FMIDLVQNGGDSYTSLKDVTRRQTISPKYLEQIATSLSKSGLILSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVL 111
           G +GG +L R  ++ T+ D+++  E +F    C       CP   SC       GL  V+
Sbjct: 60  GPQGGYKLARSPEKYTVADILRPIEGTFACVACLEQTPNACPRYESCSTVHFWEGLHEVM 119

Query: 112 RKALNA 117
              LN 
Sbjct: 120 TNYLNG 125


>gi|85712744|ref|ZP_01043789.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
 gi|85693476|gb|EAQ31429.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
          Length = 155

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+     P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVAMFAKQAPVPLADISDRQGISLSYLEQLFARLRKRGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
             GG RL R AD I++  V+ A +ES    +C    K +C     C LT  L + L+   
Sbjct: 61  PGGGYRLGRDADSISVGAVIDAVDESIDATKC--QGKGNCHNGEQC-LTHSLWEGLSDRI 117

Query: 117 -AFFDVLT 123
             F D +T
Sbjct: 118 AQFLDGIT 125


>gi|307151468|ref|YP_003886852.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7822]
 gi|306981696|gb|ADN13577.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7822]
          Length = 143

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  + +Y +  L+  A   D   P  +++I     I E +L +I   L + G++++ R
Sbjct: 1   MSLPSKVEYALLALLEMASQPDLKKPLTVNEITAKQPIPERYLEQIFASLRRGGLLKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R    IT+L++V   E +  + E      ++  L+         ++A  A 
Sbjct: 61  GSKGGYVLAREPQDITLLEIVSIIEGNRQIKENMDVSTVEMKLIQES-----WQQANQAA 115

Query: 119 FDVLTQYSIECLVRNRSS 136
             +L QY++  L + R S
Sbjct: 116 QSILGQYTLLDLCKQRES 133


>gi|304321528|ref|YP_003855171.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
 gi|303300430|gb|ADM10029.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
          Length = 134

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
           +P  +  IA    +S  FL +IL+ L +AG+VE+ RG  GG RL R A +I + +VV+A 
Sbjct: 12  FPVTVQAIAARQRLSAPFLEQILRKLRRAGLVESRRGVNGGYRLARRAAEIPVSEVVRAV 71

Query: 83  EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           EE      C     + C    +  LT  L   L+   +
Sbjct: 72  EEEIRSTACQPGAVLGCTGTSARCLTHHLWSGLDRHIE 109


>gi|329934917|ref|ZP_08284958.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
           griseoaurantiacus M045]
 gi|329305739|gb|EGG49595.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
           griseoaurantiacus M045]
          Length = 156

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++A    +      K++  L   G++   RGR
Sbjct: 1   MRLLRSTDLALRVLMRLAVAGDSSPTTREVAADMDVPYTHAAKVVAELQHRGLLAARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRKAL 115
            GG+ +       ++  VV+A E +   +     E   +    CPL   C L   LR+A 
Sbjct: 61  GGGLSVTEAGRTASVGRVVRAFEGADGGSDVVDCEGGGTGTPPCPLRSDCLLRGALRRAQ 120

Query: 116 NAFFDVLTQYSIECLV 131
            AF+  L   +++ ++
Sbjct: 121 EAFYASLDPLTVQDMI 136


>gi|205374225|ref|ZP_03227024.1| transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 139

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA    +SE +L +++ PL  AG+V ++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKRHGEGPTSLKTIATTHELSEHYLEQLIAPLRNAGLVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  D+++  E      E     +             + +K  +A  
Sbjct: 61  AYGGYVLAMEPKEITAGDIIRVLEGPISPVEGIEDEE--------PAKRELWKKIRDAVK 112

Query: 120 DVLTQYSIECL 130
           DVL   +IE L
Sbjct: 113 DVLDNTTIEDL 123


>gi|42780147|ref|NP_977394.1| hypothetical protein BCE_1071 [Bacillus cereus ATCC 10987]
 gi|42736065|gb|AAS40002.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 168

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KAGIV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|288961940|ref|YP_003452250.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914220|dbj|BAI75706.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 150

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+++  Y +R L+  A   D  + I  + IAE   I   FL  IL  L K G++   RG+
Sbjct: 2   LSQKAKYALRALIMLA-EKDTGDLILIADIAERENIPRKFLEAILVELRKEGLLFAKRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116
            GG RL RPA +IT  +V++  +       C +        DC    +C +  ++ +  +
Sbjct: 61  SGGYRLARPAAEITFGEVIRLIDGHLAPIPCASKASFRPCEDCIDTATCSVRWLMVQVRD 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
           A   VL   ++   +R+R S   I
Sbjct: 121 ATAAVLDNRTLADALRHRQSTGNI 144


>gi|253999553|ref|YP_003051616.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
           SIP3-4]
 gi|253986232|gb|ACT51089.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           SIP3-4]
          Length = 162

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+   + P  ++ I+E   IS  +L ++   L ++G+V +VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  + +   +I++ +++ A +E     +C   HK +C     C +T  L   LNA  
Sbjct: 61  PGGGYLIAKKPGEISVANIIAAADELIDATQC-GGHK-NCRGEKPC-MTHELWSTLNAKI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D L+  S+E LV ++S  + I
Sbjct: 118 LDYLSAVSLEDLVASQSDERAI 139


>gi|256826636|ref|YP_003150595.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
 gi|256582779|gb|ACU93913.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
          Length = 150

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  C      P  +  IA+   IS+ +L +++  L   GI++  RG
Sbjct: 1   MQISTKGRYALRFLLDLCQHQGTGPVPLKDIAQRQGISKKYLEQVIALLNPTGILQVTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            +GG RL +    IT+ DV+  TE  F          +D 
Sbjct: 61  YQGGYRLAKAPRDITVADVLAVTESGFTAGAASTGTNVDT 100


>gi|90422537|ref|YP_530907.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
          palustris BisB18]
 gi|90104551|gb|ABD86588.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
          palustris BisB18]
          Length = 154

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K T  G+  ++  A H D       IAE   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1  MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVRARLIESVRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
           GG R      ++T+LD++   E++    E  AS
Sbjct: 61 GGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAAS 94


>gi|209525268|ref|ZP_03273810.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
          CS-328]
 gi|209494283|gb|EDZ94596.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
          CS-328]
          Length = 147

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  A+  N  P  +  IA    I   +L K+L  + + G+V +VRG
Sbjct: 1  MKLTTRGHYSVKALLDLAVLQNQGPISVRAIASRQNIPAPYLEKLLIEMRQRGLVISVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG +L  P  QI++  +++A  E+    E  ++H+ D 
Sbjct: 61 AHGGYQLAYPPAQISLGQILEAVGETI---EPLSNHQPDA 97


>gi|120554049|ref|YP_958400.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323898|gb|ABM18213.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
           VT8]
          Length = 165

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLALHAGQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD++ + +VV A  ES     C   +K DC     C    +     +   
Sbjct: 61  PGGGYRLSRSADEVFVAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVR 132
             L++ S+  L+R
Sbjct: 119 QFLSEISLGDLMR 131


>gi|109897562|ref|YP_660817.1| BadM/Rrf2 family transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307518|ref|YP_004435369.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|109699843|gb|ABG39763.1| transcriptional regulator, BadM/Rrf2 family [Pseudoalteromonas
           atlantica T6c]
 gi|332174847|gb|AEE24101.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 161

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQRGPVSLADISERQEISLSYLEQLFSRLRREKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG +L R    I I +V++A +ES     C    + DC     C    L   L + ++
Sbjct: 61  PGGGYKLGRQPSDIPIGEVIRAVDESVDATRCQG--QSDCQGGERCLTHSLWQDLSERIS 118

Query: 117 AFFDVLT------QYSIECLVRNRSSIKKIFN 142
            F D +T      Q+ ++ LV +R    K  N
Sbjct: 119 LFLDGITLGELMAQHDVK-LVADRQDKTKHLN 149


>gi|315924880|ref|ZP_07921097.1| Rrf2 family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315621779|gb|EFV01743.1| Rrf2 family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 148

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  YGI  ++  +  +   + +  + +AE   IS+++L +I   L ++G+V +V+
Sbjct: 1  MRISAKGRYGIASMIELSWMSREGHHVPVAILAENLGISKIYLEQIFSLLKRSGLVASVK 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87
          G +GG  L +PA +I++ +++KA E+  F
Sbjct: 61 GAQGGYHLAKPASEISVYEILKALEQILF 89


>gi|157691453|ref|YP_001485915.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680211|gb|ABV61355.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 145

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++  +        +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSATYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  + I+ LDV++A E    +  C   H    P  G C +   ++       
Sbjct: 61  AKGGYTILKKKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHNG-CLIEQAMQDVETKMQ 119

Query: 120 DVLTQ 124
           + L+Q
Sbjct: 120 ETLSQ 124


>gi|332655322|ref|ZP_08421062.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
 gi|332515827|gb|EGJ45437.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
          Length = 142

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ R  Y +RV++  A H +D    + ++A+   IS  +L +I+  L K  +VE V G+ 
Sbjct: 2   ISTRGRYALRVMIDLAEHADDGYIPMKEVAQRQGISLKYLERIMPALSKNNLVEGVHGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNAF 118
           GG RL R  +  T  ++++  E S     C       C    +C   ++ +K    +N +
Sbjct: 62  GGYRLSRKPEDYTAGEILRLVEGSLAPVACLECGAEPCSRQDTCKTIAMWKKFYDLVNGY 121

Query: 119 FDVLT 123
           FD +T
Sbjct: 122 FDHIT 126


>gi|323440820|gb|EGA98529.1| Rrf2 family protein [Staphylococcus aureus O11]
          Length = 117

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++I+  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96


>gi|313201580|ref|YP_004040238.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
 gi|312440896|gb|ADQ85002.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           MP688]
          Length = 162

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+   + P  ++ I+E   IS  +L ++   L ++G+V +VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  + +   +I++ +++ A +E     +C   HK +C     C +T  L   LNA  
Sbjct: 61  PGGGYLIAKKPGEISVANIIAAADELIDATQC-GGHK-NCRGEKPC-MTHELWSTLNAKI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D L+  S+E LV ++S  + I
Sbjct: 118 LDYLSAVSLEDLVASQSDERAI 139


>gi|257065352|ref|YP_003145024.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
 gi|256793005|gb|ACV23675.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
          Length = 133

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A +    P  +  +AE   IS  +L ++ +PLV + ++ + RG
Sbjct: 1   MLVSTKGRYAMRLMTDVARYQCLGPVPLRDVAERENISVKYLEQLARPLVHSDLLHSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALN 116
           + GG RL RPA +I   D+++A E +     C    + DCP    C   +    L + + 
Sbjct: 61  KGGGYRLTRPASEIKAGDILRAAEGTTIPVACNGLLE-DCPRTTECASINFWVGLDRVIE 119

Query: 117 AFFDVLTQYSI 127
            + D +T   I
Sbjct: 120 DYVDAVTLADI 130


>gi|37525899|ref|NP_929243.1| hypothetical protein plu1977 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785328|emb|CAE14270.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 154

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H+    R   IA++   +   + ++L  L +AG+  +  G+
Sbjct: 1   MPTSTRFAVAIHILTDIALHHGQAVRSEDIAKSVNTNPTVVRRLLGALAEAGLTYSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKI 97
            GG  L RP++QI++LD+ +A E+  +          +C+  H I
Sbjct: 61  GGGALLARPSNQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNI 105


>gi|82702897|ref|YP_412463.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82410962|gb|ABB75071.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 156

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++ T Y I+ L+Y A        +++ IAE       +L KILQ L K  ++ + RG
Sbjct: 1   MILSRTTQYAIQALIYMATQPPGVAVLNRTIAECLRSPPTYLAKILQELCKGNLLYSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPL 101
           ++GG  L   +D+I ++ +V+ TE   F  +C    K+      CP+
Sbjct: 61  KQGGFCLRESSDKINLMQIVRITEGPGFTEDCVLGLKVCSDTTACPM 107


>gi|328880478|emb|CCA53717.1| Predicted transcriptional regulator of sulfate
          adenylyltransferase, Rrf2 family [Streptomyces
          venezuelae ATCC 10712]
          Length = 151

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R  +  A   D  P +   IAE   IS  FL  IL  + K G+V++ RG
Sbjct: 1  MRISARADYAVRAALQLAAAQDAGPLKAEAIAEDQGISHKFLEGILGDMRKGGLVQSQRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
            GG  L RPA+ I++ +V++
Sbjct: 61 GNGGYWLARPAESISVAEVIR 81


>gi|238750360|ref|ZP_04611861.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
           43380]
 gi|238711291|gb|EEQ03508.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
           43380]
          Length = 185

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG  L + A +I +  V+ A +ES     C
Sbjct: 82  PGGGYLLGKDASEIAVGAVITAVDESVDATRC 113


>gi|254427452|ref|ZP_05041159.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
           sp. DG881]
 gi|196193621|gb|EDX88580.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
           sp. DG881]
          Length = 156

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 3   MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R ++QI +  V+ A +ES     C   H  DC    +C
Sbjct: 63  PGGGYQLSRESEQIDVAAVIAAVDESVDATRC-GGHG-DCQEGDTC 106


>gi|158313027|ref|YP_001505535.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108432|gb|ABW10629.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EAN1pec]
          Length = 151

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V++ RG 
Sbjct: 1  MQISARADYALRALLTLAASDGSLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG +LCRPA++ITI  V++AT+
Sbjct: 61 DGGYQLCRPAEEITIATVIRATD 83


>gi|298290870|ref|YP_003692809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927381|gb|ADH88190.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 149

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT R  YG++ +++ A      +   Q IA+A  I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTNRGKYGLKAMLHLAAQPPGTSLGGQEIADANNIPKKFLDAILLDLRHAGMLRSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L R  D I +  +++  +       C +        DC  VGSC +   + K  +A
Sbjct: 62  GGYTLARSIDDIRVGHIIRVLDGPLAPIGCASKSAYVPCQDCRDVGSCAVRITMTKVRDA 121

Query: 118 FFDVLTQYSI 127
             +VL + S+
Sbjct: 122 ISEVLDRMSL 131


>gi|239916899|ref|YP_002956457.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|281414646|ref|ZP_06246388.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|239838106|gb|ACS29903.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
          Length = 157

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +RVLM  A          QIA+   +    + K +  L + G +E +RGR
Sbjct: 1   MKLSAYTDVCLRVLMTLAAAEGERVTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNAF 118
            GG  +        + ++V+A      V +C A H+  + CP    C L   L +A  AF
Sbjct: 61  NGGATIAEAGLDQRVGELVRALSSRDEVIDC-AGHETGVPCPFAADCRLREALARAREAF 119

Query: 119 FDVLTQYSIECLVR 132
              L   ++  LVR
Sbjct: 120 MAELDLLTVRDLVR 133


>gi|127513246|ref|YP_001094443.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
          PV-4]
 gi|126638541|gb|ABO24184.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
          PV-4]
          Length = 153

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL   A  I++  VV+A +ES     C
Sbjct: 61 PGGGYRLGFDASDISVGMVVRAVDESVDATRC 92


>gi|296328218|ref|ZP_06870749.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154730|gb|EFG95516.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 142

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L Y ++ +   NRI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1   MKLKNEIEYVFRILNYLSLQD--KNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114
           +G  GG +L +    IT+ D V+  E+   + +  C            SC +    L K 
Sbjct: 59  KGANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVGQ-------TSCSIIFEALEKV 111

Query: 115 LNAFFDVLTQYSIECL 130
            N F + L + + + L
Sbjct: 112 ENNFLNNLEKVNFQEL 127


>gi|75909333|ref|YP_323629.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
          ATCC 29413]
 gi|75703058|gb|ABA22734.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
          ATCC 29413]
          Length = 147

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG +L R   +I+I  +++A +E+
Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDET 86


>gi|19704428|ref|NP_603990.1| hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714688|gb|AAL95289.1| Hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 142

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 15/136 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L Y ++ +   NRI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1   MKLKNEIEYVFRILNYLSLQD--KNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114
           +G  GG +L +    IT+ D V+  E+   + +  C            SC +    L K 
Sbjct: 59  KGANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVGQ-------TSCSIIFEALEKV 111

Query: 115 LNAFFDVLTQYSIECL 130
            N F + L + + + L
Sbjct: 112 ENNFLNNLEKVNFQEL 127


>gi|271501586|ref|YP_003334612.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
           Ech586]
 gi|270345141|gb|ACZ77906.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech586]
          Length = 164

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + + +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDSAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV N+
Sbjct: 119 EFLNNITLDELVNNK 133


>gi|254302940|ref|ZP_04970298.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323132|gb|EDK88382.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 141

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + K  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYKILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S++  + N   I
Sbjct: 121 AMTKILSETSLQDFINNGKKI 141


>gi|327394815|dbj|BAK12237.1| Rrf2 family protein YfhP [Pantoea ananatis AJ13355]
          Length = 165

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + A+ I + +V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKEANAIAVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV N+
Sbjct: 118 SEFLNNITLAELVNNQ 133


>gi|291618422|ref|YP_003521164.1| YfhP [Pantoea ananatis LMG 20103]
 gi|291153452|gb|ADD78036.1| YfhP [Pantoea ananatis LMG 20103]
          Length = 170

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 6   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + A+ I + +V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 66  PGGGYLLGKEANAIAVGEVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 122

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV N+
Sbjct: 123 SEFLNNITLAELVNNQ 138


>gi|257063216|ref|YP_003142888.1| transcriptional regulator, BadM/Rrf2 family [Slackia
          heliotrinireducens DSM 20476]
 gi|256790869|gb|ACV21539.1| transcriptional regulator, BadM/Rrf2 family [Slackia
          heliotrinireducens DSM 20476]
          Length = 136

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + R+ Y + V++  A    +    + +IA+   ISE +L  IL+ LVK G +  VRG
Sbjct: 1  MLFSTRSQYALSVMVDLAERQAEGYTPLKEIADRQGISEKYLESILKVLVKNGFLIGVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
          + GG +L R  D  T+ DV++ TE+S 
Sbjct: 61 KGGGYKLTRNPDLYTVGDVLRLTEDSL 87


>gi|169831709|ref|YP_001717691.1| BadM/Rrf2 family transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638553|gb|ACA60059.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 151

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG R L+  A H+ + P  +  IA    +S+ +L +++  L  AG+V ++RG
Sbjct: 1   MRVSTRVRYGTRALVDIAEHHGNGPVCLRDIARRQKVSQPYLEQLILLLKAAGLVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L R   +I++++V+        V +C       C   G+CG+     +  +A  
Sbjct: 61  ARGGFVLARDPAEISMIEVMTTLGWESEVVDCVGDPG-SCSRAGACGMRDFWCRLSDAVS 119

Query: 120 DVLTQYSIECLVRNRS 135
            V+   ++  L++ ++
Sbjct: 120 KVVGSTTLADLMQEQA 135


>gi|154503668|ref|ZP_02040728.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC
          29149]
 gi|153795768|gb|EDN78188.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC
          29149]
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY IR++ Y A  N      ++++    I   ++ KI + L +  IV+   G 
Sbjct: 1  MQLTNTTDYAIRIVCYLASENKVIT-TAELSRELNIPASYIPKITKQLKEKEIVKAAEGS 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L +  ++I+++DV+  TE +  ++ C 
Sbjct: 60 NGGYMLEKRPEEISLMDVINCTESTMAISRCL 91


>gi|110636622|ref|YP_676829.1| BadM/Rrf2 family transcriptional regulator [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110279303|gb|ABG57489.1| transcriptional regulator, BadM/Rrf2 family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 140

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+  Y ++ L++ + + D     I++I+E   I + FL +IL  L K GI+++ RG+ 
Sbjct: 2   LSKKAKYALKALLFLSKNTDRGVVLIAEISETEGIPKKFLEQILLELKKQGILQSKRGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA++I I  VV+  +       C +        +C    +C + ++  +  +A
Sbjct: 62  GGYFLGKPANEIGIGQVVRIIDGPLAPIPCVSKMAYRRCDECIDEKTCEIRNLFLQVRDA 121

Query: 118 FFDVLTQYSIECL 130
             ++L + S+  L
Sbjct: 122 TIEILDKTSLSDL 134


>gi|317057079|ref|YP_004105546.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315449348|gb|ADU22912.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 149

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R +YGI  L   AI+  N      S I+E   IS+ +L +I+  L + G V+  +
Sbjct: 1   MKISTRVEYGIIALADIAINGANGKTVSSSDISERQDISQKYLEQIIISLRQGGFVKGQK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALN 116
           G RGG  L RPA++I + +++ A + S        S +    +  S  C L   +   + 
Sbjct: 61  GSRGGYMLSRPAEKIYLSEILNALDNSILADAYEESEENTAGMRNSVNCCLWDKINSYMR 120

Query: 117 AFFDVLT 123
           +F + +T
Sbjct: 121 SFTEQMT 127


>gi|257452761|ref|ZP_05618060.1| hypothetical protein F3_06819 [Fusobacterium sp. 3_1_5R]
 gi|257466870|ref|ZP_05631181.1| hypothetical protein FgonA2_05470 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918018|ref|ZP_07914258.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059302|ref|ZP_07923787.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684978|gb|EFS21813.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313691893|gb|EFS28728.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 137

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L+Y + +    +R+   ++I+E   I  LF  +IL+ + KAG++   
Sbjct: 1   MRLKNEVEYVFRILLYLSKYG--KDRVISSTEISEKEQIPHLFSLRILKKMEKAGLLSIQ 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALN 116
           +G +GG  L +    IT+   ++  E    V +C +  K  C L G  C +   +     
Sbjct: 59  KGAKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVSDPK-SCSLRGGRCSVHRAMALIEK 117

Query: 117 AFFDVLTQYSIECL 130
            F + L +Y+ + L
Sbjct: 118 EFIEHLAKYNFQDL 131


>gi|237746485|ref|ZP_04576965.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229377836|gb|EEO27927.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 154

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           IS  +L +I   L KAG++++VRG +GG +L R  +  TI D+++  E +     C  + 
Sbjct: 37  ISPKYLEQIATALGKAGLIQSVRGPQGGYKLSRQPESYTIGDILRPIEGNLACVACLETT 96

Query: 96  KIDCPLVGSC-------GLTSVLRKALNA 117
             +CP   +C       GL  V+   LN+
Sbjct: 97  PNECPQYANCTAVRFWEGLHHVVLNYLNS 125


>gi|289167875|ref|YP_003446144.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907442|emb|CBJ22279.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 1  MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+   +  I VL+         Y N IS ++E   +S+ +L KI++ L   G+V++VR
Sbjct: 1  MRLSSGWEQSIYVLLMLDQLAKGKYINTIS-LSERLEVSDSYLKKIIKLLDNEGLVKSVR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G+ GGV L +P  QIT  DV  A E
Sbjct: 60 GKNGGVALSKPLSQITFYDVFVAIE 84


>gi|229062524|ref|ZP_04199837.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|228716807|gb|EEL68498.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
          Length = 168

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
          M  +   +Y +  L+Y       P++    I  +AE   +SE FL K+   L KAGIV +
Sbjct: 1  MQYSVGVEYALHCLVYLVTA---PSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          V G +GG RL +  + I+  DV++A E    + +C
Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|108800879|ref|YP_641076.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870019|ref|YP_939971.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436505|ref|YP_001072196.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771298|gb|ABG10020.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
 gi|119696108|gb|ABL93181.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
 gi|126236305|gb|ABN99705.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
          Length = 162

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATADDGVLVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L RPA  I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL Q S+
Sbjct: 119 RSVLEQTSL 127


>gi|67923935|ref|ZP_00517390.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH
          8501]
 gi|67854203|gb|EAM49507.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH
          8501]
          Length = 147

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R+ Y ++ L+  ++  +Y P  +  IA+   +   +L K+L  + + G+V ++RG
Sbjct: 1  MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQELPAPYLEKLLIEMRRNGLVNSLRG 60

Query: 60 RRGGVRLCRPADQIT---ILDVVKATEESF 86
           RGG +L R   +I+   ILD V  T E  
Sbjct: 61 SRGGYQLARQPSEISLGQILDAVGETIEPL 90


>gi|257464248|ref|ZP_05628627.1| hypothetical protein FuD12_10461 [Fusobacterium sp. D12]
 gi|317061765|ref|ZP_07926250.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313687441|gb|EFS24276.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L+Y + +     RI   ++I+E   I  LF  +IL+ + KAG+V   
Sbjct: 1   MRLKNEVEYVFRILLYLSRYG--KERIISSTEISEKEQIPHLFSLRILKKMEKAGLVSIQ 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALN 116
           +G +GG  L +    IT+   ++  E    V +C    K  C L  G C +   +     
Sbjct: 59  KGAKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVRDPK-SCSLRSGRCSVHRAMAVIEK 117

Query: 117 AFFDVLTQYSIECL 130
            F + L +Y+ + L
Sbjct: 118 EFIEHLAKYNFQDL 131


>gi|222151511|ref|YP_002560667.1| hypothetical protein MCCL_1264 [Macrococcus caseolyticus JCSC5402]
 gi|222120636|dbj|BAH17971.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 140

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+ +++  A   D    +S   IAE   +S+L+L +++ PL  AG++++VR
Sbjct: 1   MKISTKGRYGLTLMISLAKRYDKGETVSLKTIAEENHLSDLYLEQLVGPLRNAGLIKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG +L +   ++T  ++++  E      E       D P      L   +R A+   
Sbjct: 61  GARGGYKLMKHPKEVTTSEIIRLLEGPITPVEGIE----DEP-PAQKQLWIDIRDAVKKV 115

Query: 119 FDVLTQYSI 127
            D  T Y +
Sbjct: 116 LDETTLYDL 124


>gi|325676175|ref|ZP_08155855.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
           33707]
 gi|325552959|gb|EGD22641.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
           33707]
          Length = 148

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R++M  A         S   +AE   +S     K++  L + G+V T R
Sbjct: 1   MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  + +  E    V  C       CPL   C L S LR A +AF
Sbjct: 61  GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDKP--CPLRRGCRLRSSLRVAQDAF 118

Query: 119 FDVLTQYSIECL 130
           +  L   ++  L
Sbjct: 119 YTALDAMTVRDL 130


>gi|257789851|ref|YP_003180457.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta
          DSM 2243]
 gi|325832443|ref|ZP_08165396.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
 gi|257473748|gb|ACV54068.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta
          DSM 2243]
 gi|325486004|gb|EGC88460.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L   TDYG+R ++Y A      +    IAE   I   +L ++ Q L  AGI+E   G+
Sbjct: 1  MQLKASTDYGMRAILYLAAQGTTCSS-KDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59

Query: 61 RGGVRLCR-PADQITILDVVKATEES 85
           GG RL + PAD   +L++++A ++ 
Sbjct: 60 HGGYRLAKDPAD-TNVLEIMEALDDD 84


>gi|114563595|ref|YP_751108.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334888|gb|ABI72270.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           frigidimarina NCIMB 400]
          Length = 153

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSATGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV A +ES     C    K +C     C   S+         
Sbjct: 61  PGGGYRLGLEAVDISVGMVVHAVDESVDATRCQG--KGNCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L++ R
Sbjct: 119 DFLDGISLAGLMQKR 133


>gi|317489305|ref|ZP_07947819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316911550|gb|EFV33145.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L   TDYG+R ++Y A      +    IAE   I   +L ++ Q L  AGI+E   G+
Sbjct: 1  MQLKASTDYGMRAILYLAAQGTTCSS-KDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59

Query: 61 RGGVRLCR-PADQITILDVVKATEES 85
           GG RL + PAD   +L++++A ++ 
Sbjct: 60 HGGYRLAKDPAD-TNVLEIMEALDDD 84


>gi|152983079|ref|YP_001352722.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151283156|gb|ABR91566.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 185

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +++   +YG+  L++    +      S   +AE   +   FL K+   LVKAG+V +  G
Sbjct: 3   YISSGVEYGLHCLLFLTRSSAAVEEASVRDLAELQGVPHDFLAKLFTKLVKAGLVVSTEG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
            +GGVRL R  ++IT+ DV+ A +    + +C         F S+       G C + +V
Sbjct: 63  VKGGVRLARLPERITVHDVIVAIDGDKSLFDCREIRGRCAVFDSNAPAWATRGVCSIDAV 122

Query: 111 LRKALNAFFDVLTQYSIECLVR 132
           ++ A  A    L Q+++  L +
Sbjct: 123 MQLAEKAMRAELKQHTLADLAQ 144


>gi|169350929|ref|ZP_02867867.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
 gi|169291991|gb|EDS74124.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
          Length = 148

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +R+++  AIH+D    P  +  IA+   ++  +L +I+  L KAG ++++
Sbjct: 1   MKISTKGRYALRIMLDIAIHDDGKYIP--LKDIAKRQNLTVKYLEQIISLLNKAGYLQSL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KA 114
           RG  GG RL +  D+  + D+++ TE       C       C     C      R   + 
Sbjct: 59  RGNTGGYRLAKNLDEYVVGDILRVTEGDLAPVACLKKCGDFCQREDICNTVLFWRGLDRV 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
           +N + D  T   +    +++ + KK+
Sbjct: 119 INEYVDSYTLKDLLEQSQDKDNNKKL 144


>gi|310815934|ref|YP_003963898.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
           vulgare Y25]
 gi|308754669|gb|ADO42598.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
           vulgare Y25]
          Length = 142

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 5/111 (4%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + +I++   IS  +L ++   L +A +VE+ RG  GG +L RP DQI++ D+++A +E+ 
Sbjct: 18  LGEISKRQDISLPYLEQLFVKLRRADLVESARGPGGGYKLARPMDQISVADILEAVDET- 76

Query: 87  FVAECFASHKIDCPLVGS--CGLTSVLRKALNA-FFDVLTQYSIECLVRNR 134
            V+       +   L GS    LT+ L + L+A  +  L Q  +  +V+NR
Sbjct: 77  -VSAMHKGAGVSGGLSGSRAQSLTNRLWEGLSAQVYVFLHQTKLSDIVKNR 126


>gi|302387262|ref|YP_003823084.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197890|gb|ADL05461.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A H ND    +  I++   IS+ +L +I+  L ++ ++ T RG
Sbjct: 1   MKISTRGRYSLRMMIDLAEHYNDEFIALKDISKRQNISKKYLEQIVPFLNRSNLLTTYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
             GG +L R   QITI D++ ++E S     C  +    C     C       GL+ V+ 
Sbjct: 61  HMGGYKLARHPSQITIGDILLSSEGSLNPVSCMDNDPSICARQEDCLTLPIWQGLSEVIA 120

Query: 113 KALNAF 118
             LN  
Sbjct: 121 DYLNGI 126


>gi|332708195|ref|ZP_08428185.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula
          3L]
 gi|332353021|gb|EGJ32571.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula
          3L]
          Length = 147

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA+   +   +L K+L  + +AG+V++VRG
Sbjct: 1  MKLTTRGHYSVKALLDLSLRPGYGPTSVRAIAKRQGLPAPYLEKLLIEMRRAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           +GG +L     QI++  +++A  E+    E    H  D 
Sbjct: 61 AQGGYQLAHEPTQISLGKILEAVGETI---EPLPHHTPDA 97


>gi|317131673|ref|YP_004090987.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
          harbinense YUAN-3]
 gi|315469652|gb|ADU26256.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
          harbinense YUAN-3]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  YG+R L+  A+H D  +  +  IA+   IS  +L ++   L KAG V +V+G
Sbjct: 1  MKLSTKGRYGLRALLDLAVHADGSHVSLYNIADRQQISVNYLEQVFSQLRKAGFVRSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
           +GG  L     ++TI  +++  E S  +A
Sbjct: 61 AQGGYALAMQPQEMTIGGILRVLEGSLHIA 90


>gi|310826117|ref|YP_003958474.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308737851|gb|ADO35511.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 148

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +  YG+  ++  A      DY   I  IAE   +S+++L ++   L +AG+V +V
Sbjct: 1  MRISAKGRYGLAAMIAIAQGDFEGDYVPVIV-IAEKLGLSKIYLEQVFSLLKRAGLVNSV 59

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87
          +G +GG RL R  DQI   +++ A E+  F
Sbjct: 60 KGAQGGYRLTREPDQINAHEILTALEQILF 89


>gi|34763033|ref|ZP_00144008.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237742023|ref|ZP_04572504.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256845364|ref|ZP_05550822.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294785339|ref|ZP_06750627.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
 gi|27887293|gb|EAA24389.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429671|gb|EEO39883.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256718923|gb|EEU32478.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294487053|gb|EFG34415.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
          Length = 141

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L Y ++ +   +RI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1   MKLKNEIEYVFRILNYLSLQD--KDRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKA 114
           +G  GG +L R    IT+ D V+  E+   + +  C A          SC +    L K 
Sbjct: 59  KGANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCIAGQ-------TSCSIIFGALEKV 111

Query: 115 LNAFFDVLTQYSIECLV 131
            N F   L + + + L 
Sbjct: 112 ENNFLKNLEKVNFKELT 128


>gi|229013707|ref|ZP_04170836.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
 gi|229062189|ref|ZP_04199513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|229135339|ref|ZP_04264130.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
 gi|229169232|ref|ZP_04296946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|228614298|gb|EEK71409.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|228648114|gb|EEL04158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
 gi|228717172|gb|EEL68848.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|228747629|gb|EEL97503.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
          Length = 151

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
           +GG  L R  D+IT+LDV KA E  E   +     +  I+CP+     + SVL     ++
Sbjct: 68  KGGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPV--GANIQSVLEIILIQS 125

Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
             A  +VL   +++ LV N +S IK+
Sbjct: 126 QEAMENVLANVTVQQLVTNLKSKIKE 151


>gi|159184477|ref|NP_353841.2| hypothetical protein Atu0819 [Agrobacterium tumefaciens str. C58]
 gi|159139787|gb|AAK86626.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 146

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++++  Y +R L+  A  +   P +IS IA    I + FL +IL  + K  IVE+ RG++
Sbjct: 2   ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA  IT  +V++  +       C +        DC     C +  V  +  +A
Sbjct: 62  GGYLLARPASDITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 121

Query: 118 FFDVLTQYSI 127
             ++L   ++
Sbjct: 122 TRNILFNTTV 131


>gi|163942239|ref|YP_001647123.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864436|gb|ABY45495.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
          Length = 143

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
           +GG  L R  D+IT+LDV KA E  E   +     +  I+CP+     + SVL     ++
Sbjct: 60  KGGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPV--GANIQSVLEIILIQS 117

Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
             A  +VL   +++ LV N +S IK+
Sbjct: 118 QEAMENVLANVTVQQLVTNLKSKIKE 143


>gi|86141875|ref|ZP_01060399.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
 gi|85831438|gb|EAQ49894.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
          Length = 137

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A H  + P +I  IA++  IS+ FL  I+  L KAG + + +G+ 
Sbjct: 2   LSKKTKYGLKALAYVAKHKGEDPVQIGAIAKSENISQKFLESIMLTLRKAGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R  ++I +++V++  E    +  C    F     DCP   +C + S++ +  ++
Sbjct: 62  GGYYLRRQPEEIKMVEVMRILEGPVSMVPCVSLNFYEKCDDCPDETTCSVHSLMVQLRDS 121

Query: 118 FFDVLTQYSIECLV 131
              VL + ++  L+
Sbjct: 122 NLAVLNKNTLADLI 135


>gi|15924616|ref|NP_372150.1| hypothetical protein SAV1626 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15927206|ref|NP_374739.1| hypothetical protein SA1453 [Staphylococcus aureus subsp. aureus
          N315]
 gi|21283305|ref|NP_646393.1| hypothetical protein MW1576 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49483871|ref|YP_041095.1| hypothetical protein SAR1706 [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49486459|ref|YP_043680.1| hypothetical protein SAS1562 [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650508|ref|YP_186521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
 gi|82751225|ref|YP_416966.1| hypothetical protein SAB1496c [Staphylococcus aureus RF122]
 gi|87161573|ref|YP_494278.1| hypothetical protein SAUSA300_1583 [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|148268107|ref|YP_001247050.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150394175|ref|YP_001316850.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH1]
 gi|151221740|ref|YP_001332562.1| hypothetical protein NWMN_1528 [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156979944|ref|YP_001442203.1| hypothetical protein SAHV_1613 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|221141104|ref|ZP_03565597.1| hypothetical protein SauraJ_05628 [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|253314983|ref|ZP_04838196.1| hypothetical protein SauraC_02182 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253732283|ref|ZP_04866448.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733122|ref|ZP_04867287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255006412|ref|ZP_05145013.2| hypothetical protein SauraM_08085 [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257425750|ref|ZP_05602174.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428410|ref|ZP_05604808.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 65-1322]
 gi|257431048|ref|ZP_05607427.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257433734|ref|ZP_05610092.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257436649|ref|ZP_05612693.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M876]
 gi|257793700|ref|ZP_05642679.1| Rrf2 family protein [Staphylococcus aureus A9781]
 gi|258411001|ref|ZP_05681281.1| Rrf2 family protein [Staphylococcus aureus A9763]
 gi|258420198|ref|ZP_05683153.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A9719]
 gi|258424052|ref|ZP_05686934.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258438199|ref|ZP_05689483.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A9299]
 gi|258443662|ref|ZP_05692001.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446869|ref|ZP_05695023.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A6300]
 gi|258448783|ref|ZP_05696895.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258450547|ref|ZP_05698609.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453602|ref|ZP_05701580.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|262048619|ref|ZP_06021502.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
 gi|262051277|ref|ZP_06023501.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
 gi|269203252|ref|YP_003282521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282893129|ref|ZP_06301363.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8117]
 gi|282904206|ref|ZP_06312094.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
 gi|282906032|ref|ZP_06313887.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus Btn1260]
 gi|282908946|ref|ZP_06316764.1| iron-sulfur cluster assembly transcription factor IscR
          [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911263|ref|ZP_06319065.1| iron-sulfur cluster assembly transcription factor IscR
          [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914431|ref|ZP_06322217.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916894|ref|ZP_06324652.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus D139]
 gi|282919400|ref|ZP_06327135.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus C427]
 gi|282920174|ref|ZP_06327899.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A9765]
 gi|282924725|ref|ZP_06332393.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus C101]
 gi|282928260|ref|ZP_06335865.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A10102]
 gi|283770700|ref|ZP_06343592.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus H19]
 gi|283958386|ref|ZP_06375837.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|284024683|ref|ZP_06379081.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 132]
 gi|293503505|ref|ZP_06667352.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus 58-424]
 gi|293510523|ref|ZP_06669229.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus M809]
 gi|293531063|ref|ZP_06671745.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294848656|ref|ZP_06789402.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A9754]
 gi|295406748|ref|ZP_06816553.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8819]
 gi|295428202|ref|ZP_06820834.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus EMRSA16]
 gi|296275912|ref|ZP_06858419.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297207653|ref|ZP_06924088.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297590830|ref|ZP_06949468.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|300911735|ref|ZP_07129178.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|304380777|ref|ZP_07363444.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|13701424|dbj|BAB42718.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 gi|14247397|dbj|BAB57788.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|21204745|dbj|BAB95441.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49242000|emb|CAG40697.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|49244902|emb|CAG43363.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57284694|gb|AAW36788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656756|emb|CAI81185.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|87127547|gb|ABD22061.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|147741176|gb|ABQ49474.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus JH9]
 gi|149946627|gb|ABR52563.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
          aureus subsp. aureus JH1]
 gi|150374540|dbj|BAF67800.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156722079|dbj|BAF78496.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253724072|gb|EES92801.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728878|gb|EES97607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257271444|gb|EEV03590.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275251|gb|EEV06738.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 65-1322]
 gi|257278251|gb|EEV08893.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257281827|gb|EEV11964.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257284000|gb|EEV14123.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M876]
 gi|257787672|gb|EEV26012.1| Rrf2 family protein [Staphylococcus aureus A9781]
 gi|257840151|gb|EEV64615.1| Rrf2 family protein [Staphylococcus aureus A9763]
 gi|257843909|gb|EEV68303.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A9719]
 gi|257845673|gb|EEV69705.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848243|gb|EEV72234.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A9299]
 gi|257851068|gb|EEV75011.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854444|gb|EEV77393.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          A6300]
 gi|257858061|gb|EEV80950.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257861705|gb|EEV84504.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864333|gb|EEV87083.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|259160914|gb|EEW45934.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
 gi|259163266|gb|EEW47825.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
 gi|262075542|gb|ACY11515.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
 gi|269941112|emb|CBI49498.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TW20]
 gi|282313560|gb|EFB43955.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus C101]
 gi|282317210|gb|EFB47584.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus C427]
 gi|282319381|gb|EFB49733.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus D139]
 gi|282321612|gb|EFB51937.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
 gi|282324958|gb|EFB55268.1| iron-sulfur cluster assembly transcription factor IscR
          [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327210|gb|EFB57505.1| iron-sulfur cluster assembly transcription factor IscR
          [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331324|gb|EFB60838.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus Btn1260]
 gi|282590067|gb|EFB95149.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A10102]
 gi|282594522|gb|EFB99507.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A9765]
 gi|282595824|gb|EFC00788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
 gi|282764447|gb|EFC04573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8117]
 gi|283460847|gb|EFC07937.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus H19]
 gi|283470903|emb|CAQ50114.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ST398]
 gi|283790535|gb|EFC29352.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|285817308|gb|ADC37795.1| Iron-sulfur cluster regulator IscR [Staphylococcus aureus
          04-02981]
 gi|290920331|gb|EFD97397.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095171|gb|EFE25436.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus 58-424]
 gi|291466887|gb|EFF09407.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus M809]
 gi|294824682|gb|EFG41105.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A9754]
 gi|294968495|gb|EFG44519.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8819]
 gi|295128560|gb|EFG58194.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          subsp. aureus EMRSA16]
 gi|296887670|gb|EFH26568.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297575716|gb|EFH94432.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|298694906|gb|ADI98128.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ED133]
 gi|300885981|gb|EFK81183.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|302333300|gb|ADL23493.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
          aureus subsp. aureus JKD6159]
 gi|302751455|gb|ADL65632.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304340653|gb|EFM06586.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|312437906|gb|ADQ76977.1| Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH60]
 gi|312830013|emb|CBX34855.1| rrf2 family protein (transcriptional regulator) family protein
          [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129908|gb|EFT85898.1| hypothetical protein CGSSa03_02453 [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|315195526|gb|EFU25913.1| hypothetical protein CGSSa00_07665 [Staphylococcus aureus subsp.
          aureus CGS00]
 gi|315198676|gb|EFU29004.1| hypothetical protein CGSSa01_09149 [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320140487|gb|EFW32341.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144026|gb|EFW35795.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323442831|gb|EGB00456.1| Rrf2 family protein [Staphylococcus aureus O46]
 gi|329314301|gb|AEB88714.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus T0131]
 gi|329727351|gb|EGG63807.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
          subsp. aureus 21172]
 gi|329728427|gb|EGG64864.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
          subsp. aureus 21189]
 gi|329733167|gb|EGG69504.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 140

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++I+  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96


>gi|119491073|ref|ZP_01623231.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
 gi|119453618|gb|EAW34778.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
          Length = 144

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ ++ Y +  L+    H  +  P +I QIA    I E +L ++L  L ++GIV + R
Sbjct: 1   MELSCKSQYAVLALLELTAHYPHGEPRQIRQIARQHHIPERYLEQLLATLKRSGIVRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +   +IT+ DVV   E S         HK     + S  +  V  +A    
Sbjct: 61  GAKGGYLLAKEPWKITLFDVVVCLEGSNSSPNRNRHHKS----LESLIVDEVWEEAHQMA 116

Query: 119 FDVLTQYSIECL 130
             +L +Y+++ L
Sbjct: 117 NSILQKYTLQDL 128


>gi|297245670|ref|ZP_06929535.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8796]
 gi|297177321|gb|EFH36573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
          A8796]
          Length = 140

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++I+  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96


>gi|224372917|ref|YP_002607289.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
           AmH]
 gi|223589916|gb|ACM93652.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
           AmH]
          Length = 138

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T Y +  L+  +   D P  ++ +AE   + + FL K+LQ L + G V++ +G 
Sbjct: 1   MLFTKSTAYTLHALVELS-KFDKPVDVTHLAEITELPKPFLAKLLQTLSRKGFVKSFKGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
            GG  L +    I I+D+ +  E+   +    +S   DC       C +          F
Sbjct: 60  HGGFILSKEPKDIKIIDIFRVMEDKNSLVFYCSSDPDDCMRGRANICSIRPFFAFLEEEF 119

Query: 119 FDVLTQYSIECLVRNRS 135
             ++  Y++E ++R +S
Sbjct: 120 LKIVQNYTLEDVIRMKS 136


>gi|284049281|ref|YP_003399620.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
 gi|283953502|gb|ADB48305.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
          Length = 140

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI+       I  +++   ISE +L +I+  L +A +V++ RG
Sbjct: 1   MKISTKGRYALRLMIDLAINGTESYVPIKSVSQRQEISEKYLEQIITQLSRAKLVKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R     T  ++++A E S     C       C     C    + ++  +A  
Sbjct: 61  AQGGYKLVRDPKDYTAGEILRAVEGSLAPVACLEPGHAICDRAAHCVTLDLWKEIQDAID 120

Query: 120 DVLTQYSIECLVRNRS 135
           +++   ++E LV+ + 
Sbjct: 121 NIVDNTTLEDLVKKQE 136


>gi|266624781|ref|ZP_06117716.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
 gi|288863341|gb|EFC95639.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
          Length = 139

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A    D    + +IA    ISE +L  +++ LV+  ++  +RG
Sbjct: 1   MMISTRGRYALRVMLDLAQQTTDRYVPLKEIANRQEISEKYLEIVIKVLVQNKLLTGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
           + GG RL R   + T+ ++++ TE S     C      +C   G C    +   L K +N
Sbjct: 61  KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACAEESYTECSRRGFCLSRPVWQELDKIIN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 EYLDGIT 127


>gi|330994034|ref|ZP_08317964.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
 gi|329758980|gb|EGG75494.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
          Length = 153

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY +  L+      +       ++ +  I E  + K+L+ L   GIV + RG 
Sbjct: 2   LKLSKLTDYAVVALVRLGQKEEVTTS-PVLSRSTGIPEPTVAKVLKILATQGIVTSQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-------TSVLRK 113
           RGG RL  P ++I+I  V++A +    +  C      DC    +CGL        + +R 
Sbjct: 61  RGGYRLAHPLEEISIAAVIEAIDGPISLTTCVDGG--DCDARSTCGLGGEWDLVNTAIRN 118

Query: 114 ALNAFF 119
           AL+   
Sbjct: 119 ALSVIM 124


>gi|329850522|ref|ZP_08265367.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840837|gb|EGF90408.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
          Length = 163

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +S+I+E   IS  +L ++   L KAG+V++ RG  GG  L R A+++ + ++V A +
Sbjct: 15  PISLSEISERQQISLSYLEQLFARLRKAGLVKSARGPGGGYSLSRGAERLFVSEIVLAVD 74

Query: 84  ESFFVAEC----------------FASHKIDCPLVGSCGLTSVLRKALN-AFFDVLTQYS 126
           E      C                 A+ +I C   G   LT  L + L  A  D L+Q S
Sbjct: 75  EPIKATRCELTSNKLGANKRLGKDEAAREIGCMPGGQRCLTHNLWEDLGVAIHDYLSQVS 134

Query: 127 IECLVRNRSSIK 138
           +E +VR R+  K
Sbjct: 135 LEDVVRKRTRKK 146


>gi|294140361|ref|YP_003556339.1| Rrf2 family protein [Shewanella violacea DSS12]
 gi|293326830|dbj|BAJ01561.1| Rrf2 family protein [Shewanella violacea DSS12]
          Length = 167

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 15  MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRNGLVSSVRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C    K +C     C   S+         
Sbjct: 75  PGGGYRLGADAVDISVGMVVRAVDESVDATRC--QGKGNCQNGTRCLTHSLWGDLSKQIS 132

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L+  R
Sbjct: 133 DFLNGISLAGLMSKR 147


>gi|148269496|ref|YP_001243956.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735040|gb|ABQ46380.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila
           RKU-1]
          Length = 137

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 16/140 (11%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRIS--QIAEAC--CISELFLFKILQPLVKAGIVETVRG 59
           T R++Y +R+++  A   +Y N +S  +I E     +   F  KIL  L KAG+V+T RG
Sbjct: 3   TMRSEYALRLMIVMA--KEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
           + GG  L RP  +I + ++V       F+ +  +    D   CP    C + ++ ++  N
Sbjct: 61  KSGGYMLARPPKEIKVSEIV-------FLLDRKSKVFFDMPGCPDELDCVIRALWKRVEN 113

Query: 117 AFFDVLTQYSIECLVRNRSS 136
               +L+  ++E L++ +  
Sbjct: 114 EIEKILSGVTLEDLIKEQEE 133


>gi|73662442|ref|YP_301223.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72494957|dbj|BAE18278.1| putative transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 139

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++  L  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAEENNLSDLYLEQLVGTLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PAD+IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESE 96


>gi|88706198|ref|ZP_01103905.1| rrf2 family protein [Congregibacter litoralis KT71]
 gi|88699592|gb|EAQ96704.1| rrf2 family protein [Congregibacter litoralis KT71]
          Length = 160

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P R++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQDLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG RL R A+ I++ DV+ A  E      C    K DC    +C
Sbjct: 61  PGGGYRLKRGAEDISVADVISAVNEDTDATRCRG--KGDCQDGDTC 104


>gi|228960772|ref|ZP_04122410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798907|gb|EEM45883.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 151

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGIHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
           +GG  L R  ++IT+LDV KA  E     + F+ H+   I+CP+  +    L  +L +A 
Sbjct: 68  KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
            A  +VL   +++ LV N  S  K
Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150


>gi|302866226|ref|YP_003834863.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|315502784|ref|YP_004081671.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|302569085|gb|ADL45287.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
 gi|315409403|gb|ADU07520.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 151

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 19/109 (17%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R DY +R  +  A    YP  +S   IA    +   FL  +L  L +AG+V   R
Sbjct: 1   MQISARGDYAVRAALSLA--TAYPTLLSTQAIAAEQDMPRKFLEAVLADLRRAGVVRAQR 58

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           G  GG  L RP  +ITI  V++A               +D PL G  GL
Sbjct: 59  GAEGGYTLARPPREITIGHVLRA---------------VDGPLAGVRGL 92


>gi|114327990|ref|YP_745147.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316164|gb|ABI62224.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 179

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVR 58
           L+K TDY + VL+  A  + +   R+     IA A  + E  + K+L+ L    +V + R
Sbjct: 7   LSKLTDYAVVVLIRLAAESGEASGRVQTAPCIAAATGVPEPTVAKVLKALSVGRLVVSQR 66

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG RL R  DQI+I DV++  E    +  C      DC     C +        +A 
Sbjct: 67  GAHGGYRLNRFLDQISIADVIRVLEGPIALTACVEGAHPDCEAACLCPMRGRWDMVNHAI 126

Query: 119 FDVLTQYSIECLVRN 133
              L+  S+  + R 
Sbjct: 127 ATALSSISLADMARQ 141


>gi|262067675|ref|ZP_06027287.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378399|gb|EFE85917.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 140

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  N  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSATICSTRGANCSIRLALKKIQNEL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N + ++
Sbjct: 120 LDDFDKINFHDLVENNTGLQ 139


>gi|157961313|ref|YP_001501347.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
           ATCC 700345]
 gi|157846313|gb|ABV86812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
           ATCC 700345]
          Length = 153

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C    + +C     C   S+     +   
Sbjct: 61  PGGGYRLGTDACDISVGMVVRAVDESVDATRCQG--QGNCQSGTRCLTHSLWGDLSSQIS 118

Query: 120 DVLTQYSIECLVRNR 134
           D L   S+  L+  R
Sbjct: 119 DFLNGISLAGLMHKR 133


>gi|261597140|gb|ACX85433.1| putative transcriptional regulator [Arthrobacter sp. NyZ415]
          Length = 158

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 10/109 (9%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAE--- 90
           +S  +L K +Q L + G+V +++G  GG  L RPA+QI+ILDVV+A E  +  FV     
Sbjct: 35  VSSSYLAKQMQALSRGGLVRSLQGHAGGYVLTRPAEQISILDVVQAVEGQQPLFVCTEIR 94

Query: 91  ---CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
                 +   DC  +  C +   +  A  A+ + L + +I  L    S+
Sbjct: 95  QRGPLGTPPEDC--LTPCPIAKAMMTAEAAWREALREVTIGDLAHQVST 141


>gi|85059748|ref|YP_455450.1| DNA-binding transcriptional regulator IscR [Sodalis glossinidius
           str. 'morsitans']
 gi|119371153|sp|Q2NS30|ISCR_SODGM RecName: Full=HTH-type transcriptional regulator iscR
 gi|84780268|dbj|BAE75045.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 165

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  +++I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSGKGPVPLAEISERQGISLSYLEQLFSRLRKHELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R +DQI +  V+ A +ES     C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGRDSDQIAVGAVITAVDESVDATRCQG--KEGCQGGDRC-LTHVLWRDLSVRI 117

Query: 119 FDVLTQYSIECLVRN 133
            + L   ++  LV N
Sbjct: 118 SEFLNNITLAELVSN 132


>gi|302338626|ref|YP_003803832.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Spirochaeta smaragdinae DSM 11293]
 gi|301635811|gb|ADK81238.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
          smaragdinae DSM 11293]
          Length = 126

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  TK T+Y +  ++  A + D    +  +AE   +S  +L KIL  LVK G + +  G 
Sbjct: 1  MKYTKATNYALHTMLIMAKNADKRISVQHLAEKQDLSPTYLSKILTKLVKGGFISSFSGA 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L +  + I+ LD++   E
Sbjct: 61 HGGYALPQNWENISFLDIIHCME 83


>gi|29827903|ref|NP_822537.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29605004|dbj|BAC69072.1| putative transcriptional regulator [Streptomyces avermitilis
           MA-4680]
          Length = 160

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+   ++C +     + P   +++AE   +S  +L K LQ L +AG+V +V+G+ GG  L
Sbjct: 6   GVEWALHCCVVLTSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGKAGGYVL 65

Query: 67  CRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFF 119
            R    IT+LDVV+A    +++F   E      +  P   SC +   + +A+     A+ 
Sbjct: 66  TREPASITVLDVVEAVDGPDQAFTCTEIRQRGPLATP-AESCAVPCAIARAMTGADAAWR 124

Query: 120 DVLTQYSIECLVRN 133
             L   SI  LV+N
Sbjct: 125 AALRAVSIADLVQN 138


>gi|213025900|ref|ZP_03340347.1| transcriptional repressor NsrR [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 93

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ I I DVV+  E
Sbjct: 15 ISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELE 71


>gi|167756512|ref|ZP_02428639.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
 gi|167702687|gb|EDS17266.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
          Length = 144

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y IRV++  A+H+D    P  +  IA+   ++  +L +I+  L KAG ++++
Sbjct: 1   MKISTKGRYAIRVILDIAMHDDGKYIP--LKDIAKRQDLTVKYLEQIISLLNKAGYLQSL 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           RG  GG RL +  ++  I D+++ TE       C      +C     C
Sbjct: 59  RGNAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANEC 106


>gi|237733110|ref|ZP_04563591.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383792|gb|EEO33883.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 147

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y IRV++  A+H+D    P  +  IA+   ++  +L +I+  L KAG ++++
Sbjct: 4   MKISTKGRYAIRVILDIAMHDDGKYIP--LKDIAKRQDLTVKYLEQIISLLNKAGYLQSL 61

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           RG  GG RL +  ++  I D+++ TE       C      +C     C
Sbjct: 62  RGNAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANEC 109


>gi|148261260|ref|YP_001235387.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
          JF-5]
 gi|146402941|gb|ABQ31468.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
          JF-5]
          Length = 97

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L++ TDY + VL+  A           IA    I E  + K+L+ L ++G+V + RG 
Sbjct: 1  MRLSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG RL RP   I I DV+ A +    +  C 
Sbjct: 60 HGGYRLGRPLAAIPIADVIVAIDGPIALTACV 91


>gi|229827945|ref|ZP_04454014.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
           49176]
 gi|229787880|gb|EEP23994.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
           49176]
          Length = 144

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H +     +  IA+   +S+ +L +I+  L  AG++ T RG
Sbjct: 1   MKISTKGRYALRLMVDLAEHKESGFIALKDIAKRQNVSKKYLEQIVPVLNGAGLLTTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALN 116
            RGG +L +   + T+ D+++ TE S     C  +    C     C    V +   K +N
Sbjct: 61  NRGGYKLSKEPSEYTVGDILRTTEGSVAPVSCLETEVNYCERKDCCQTLFVWKGLYKVVN 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 EYLDSIT 127


>gi|78358152|ref|YP_389601.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
 gi|78220557|gb|ABB39906.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. G20]
          Length = 146

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ RT Y  R+L+  A+H+ + P R S ++++  ++  F+ +IL+PL K G+V +VRG
Sbjct: 1  MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L     ++T+  +V+  E    + EC
Sbjct: 61 AAGGHLLAADPQELTLGHIVRVMEGGIHMTEC 92


>gi|50084582|ref|YP_046092.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter sp. ADP1]
 gi|49530558|emb|CAG68270.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter sp. ADP1]
          Length = 147

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +++IA    IS  +L ++   L + G+V +VRG  GG  L R A +IT+L++++A  E+ 
Sbjct: 18  LAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARHATEITVLEIIEAVNETV 77

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
               C   HK +C     C    + ++  +   D L + ++  L+
Sbjct: 78  DATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLADLI 120


>gi|322376528|ref|ZP_08051021.1| putative HTH-type transcriptional regulator YffB [Streptococcus
          sp. M334]
 gi|321282335|gb|EFX59342.1| putative HTH-type transcriptional regulator YffB [Streptococcus
          sp. M334]
          Length = 158

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
          Y N IS ++E   +S+ +L KI++ L   G+V++VRG+ GGV L +P  QIT  DV  A 
Sbjct: 25 YINTIS-LSERLEVSDSYLKKIIKLLDNEGLVKSVRGKNGGVALSKPLSQITFYDVFVAI 83

Query: 83 E 83
          E
Sbjct: 84 E 84


>gi|91775163|ref|YP_544919.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709150|gb|ABE49078.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
           flagellatus KT]
          Length = 156

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALNEEEKPVTLAGISERQGISLSYLEQLFSRLRRNGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL +   +I++ D++ A +E     +C    K +C     C +T  L  +LNA  
Sbjct: 61  PGGGYRLTKNHHEISVSDIITAVDELIDATQCGG--KENCHEGKPC-MTHDLWSSLNAKI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            + L+  ++  LV ++   K+I
Sbjct: 118 LEYLSGVALSDLVASQREGKEI 139


>gi|85375385|ref|YP_459447.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
 gi|84788468|gb|ABC64650.1| predicted transcriptional regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 136

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+   DY +  + + A H     R+S  ++A    +    + K++  L  AG++ +VR
Sbjct: 1   MRLSNLADYAVVTMSHAARHCGG-GRVSAAELAAETGLPVPTVQKVVSKLTAAGLLRSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-------LTSVL 111
           G  GG++L RPA  I + D+V+A E    +  C      DC +  +C        + + +
Sbjct: 60  GAGGGLQLARPAAAINVADIVEAVEGPIALTACI--DGTDCAVDHNCTVKPHWPLINNAM 117

Query: 112 RKALNAFFDVLTQYSIE 128
           R AL      LTQ + E
Sbjct: 118 RGALAGIP--LTQLAAE 132


>gi|194333947|ref|YP_002015807.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
          aestuarii DSM 271]
 gi|194311765|gb|ACF46160.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
          aestuarii DSM 271]
          Length = 169

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LT+ TDY +R L+  A H D       IAE   I   FL  +LQ + + G++ +  G  G
Sbjct: 5  LTQHTDYALRALLMLADHPDSYLSARHIAEKQEIPYQFLRGLLQEMPREGLICSHEGAHG 64

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECF 92
          GV L R    I++ +V++  +    ++EC 
Sbjct: 65 GVGLNRDPGSISVRNVIELFQGKVELSECM 94


>gi|296454824|ref|YP_003661968.1| BadM/Rrf2 family transcriptional regulator [Bifidobacterium
          longum subsp. longum JDM301]
 gi|296184256|gb|ADH01138.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium
          longum subsp. longum JDM301]
          Length = 140

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +  L+Y   H  + P++I  +AE  C +   + K+++PL  AG++ T  G  GG  L RP
Sbjct: 9  VHALVYLDHHATHLPSQI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66

Query: 70 ADQITILDVVKATEESF 86
          A +IT+  V +AT  +F
Sbjct: 67 AAEITLRAVAEATGTTF 83


>gi|30249423|ref|NP_841493.1| hypothetical protein NE1452 [Nitrosomonas europaea ATCC 19718]
 gi|30138786|emb|CAD85363.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
           19718]
          Length = 159

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  AI H + P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLRQRKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D++++ D++ A +E     +C    K +C     C    +  K     F
Sbjct: 61  PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWAKLNEIIF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ LV  +S 
Sbjct: 119 DYLGHVTLKRLVEEQSQ 135


>gi|300856563|ref|YP_003781547.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436678|gb|ADK16445.1| predicted transcription regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 137

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T+ +DYG RV++Y + +  Y  +I    IA+   +   FL K+L+ L +AGIV++ R
Sbjct: 1   MKITQESDYGFRVVLYLS-NLGYGKKIEAKTIAKDQNVPLRFLLKLLRKLTQAGIVKSFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNA 117
           G  GG  L R  + IT+ ++++A +   ++  C + +   +    G CG+ + L K    
Sbjct: 60  GVNGGYALNRMPEDITLRNIIEAIDGPIYLNRCLYDTEHCNAHKKGHCGVHNALSKVQGT 119

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   + + ++ ++
Sbjct: 120 LINELESINFKDIMEDK 136


>gi|238760769|ref|ZP_04621882.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
           35236]
 gi|238701015|gb|EEP93619.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
           35236]
          Length = 169

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 8   DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +YGI  L+ C +    +D    + ++A+   +   +L KI   L  AG+V +  G+ GG 
Sbjct: 9   EYGIHSLV-CMVDINGDDREMNVREMADLQGVPYDYLAKIFTRLSHAGLVVSSEGKGGGF 67

Query: 65  RLCRPADQITILDVVKATEESFFVAEC------FASHKIDCPLV---GSCGLTSVLRKAL 115
           RL RP+  IT+LDV++A +    + +C       A  +   P     G CG+ +V+  A 
Sbjct: 68  RLARPSALITMLDVIQAVDGQKGIFKCKEIRQRLAIFEEKLPAWVCDGPCGIRAVMDSAQ 127

Query: 116 NAFFDVLTQYSIECLVRN 133
               + L +++I  L R 
Sbjct: 128 QRMEEELARHTILDLARK 145


>gi|118469239|ref|YP_889225.1| rrf2 family protein (transcriptional regulator) [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170526|gb|ABK71422.1| rrf2 family protein (putative transcriptional regulator)
           [Mycobacterium smegmatis str. MC2 155]
          Length = 156

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATVSDGELLKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L RPAD I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  RDGGYALARPADAISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL + S+
Sbjct: 119 RSVLEETSL 127


>gi|154244166|ref|YP_001415124.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154158251|gb|ABS65467.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 148

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++  ++ A +      +++ IAEA  I + FL  IL  L  AG + + +G+ 
Sbjct: 2   LTKKGKYGLKAAVHLARLPPGASTQVADIAEANNIPKKFLDVILGELRNAGFLSSKKGKL 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL R  ++I + ++++A +       C + +      DC  V +C +  ++ +  +A
Sbjct: 62  GGYRLARAPEEIVVGEMIRALDGPLAPFACASRNAYEQCEDCD-VATCEVRMLMVQVRDA 120

Query: 118 FFDVLTQYSI 127
              VL  Y++
Sbjct: 121 IGTVLDTYTL 130


>gi|117621543|ref|YP_856282.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
          hydrophila subsp. hydrophila ATCC 7966]
 gi|117562950|gb|ABK39898.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
          hydrophila subsp. hydrophila ATCC 7966]
          Length = 167

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
            GG RL    + I++  V+ A +ES    +C  
Sbjct: 61 PGGGYRLGLAPNAISVGQVITAVDESVDATKCLG 94


>gi|319782762|ref|YP_004142238.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168650|gb|ADV12188.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 149

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++   +       ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSGLPAGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|312138539|ref|YP_004005875.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887878|emb|CBH47190.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 148

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R++M  A         S   +AE   +S     K++  L + G+V T R
Sbjct: 1   MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  + +  E    V  C       CPL   C L S LR A +AF
Sbjct: 61  GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDKP--CPLRRGCRLRSSLRVAQDAF 118

Query: 119 FDVLTQYSI 127
           +  L   ++
Sbjct: 119 YTALDAMTV 127


>gi|15964295|ref|NP_384648.1| hypothetical protein SMc02238 [Sinorhizobium meliloti 1021]
 gi|307307031|ref|ZP_07586770.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307320111|ref|ZP_07599531.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|15073472|emb|CAC45114.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894157|gb|EFN24923.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306901971|gb|EFN32570.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 168

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + +AE   +S  +L K LQ +  AG++E V G +GG RL R  ++IT+LD+V A E    
Sbjct: 29  AALAEFHGVSTSYLLKHLQAMSGAGLLEAVPGPKGGYRLARAPEKITLLDIVLAVEGPEP 88

Query: 88  VAECF-----ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
              C        +   C     C +   + +A  A+   L + +I  ++ +  +I +
Sbjct: 89  AFRCNEIRLRGPNPYSCKPAAPCTINVAMLRAEQAYRAELRRVTIAAIMADLKAIDR 145


>gi|292492144|ref|YP_003527583.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580739|gb|ADE15196.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
           Nc4]
          Length = 136

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ R  Y I  +M  A+    P+ ++   IA+   IS  +L +I   L   G+VE VR
Sbjct: 1   MRLSNRPRYAISAMMNLALAKQ-PSSVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R A++ITI +++ A ++           K++ PL  +    S   +  N F
Sbjct: 60  GPGGGYHLARAAEEITIAEIIAAVDKQ--------PGKLN-PLAIANNSVSEAERLWNDF 110

Query: 119 ----FDVLTQYSIECLVRNRSSIKK 139
               +D L Q ++  L R    +++
Sbjct: 111 SARLYDFLNQITLADLTRRWPHLRQ 135


>gi|222055613|ref|YP_002537975.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp.
          FRC-32]
 gi|221564902|gb|ACM20874.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp.
          FRC-32]
          Length = 134

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 1  MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT R++Y +  L+Y A     N  P  +  IA A  I   FL +IL  L +A  + ++
Sbjct: 1  MKLTSRSEYALLALIYLARTGSENLVP--VQTIATAQGIPPKFLEQILLILKRAKFLRSL 58

Query: 58 RGRRGGVRLCRPADQITILDVVK 80
          RG+ GG  L RPA QI + +V++
Sbjct: 59 RGQAGGYALARPASQIHLAEVIR 81


>gi|320352697|ref|YP_004194036.1| BadM/Rrf2 family transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320121199|gb|ADW16745.1| transcriptional regulator, BadM/Rrf2 family [Desulfobulbus
           propionicus DSM 2032]
          Length = 159

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y IR ++Y +           +IA    I   FL KI Q L K G++E  +G
Sbjct: 1   MRLTRAAEYAIRCMIYLSRQGQGVLTSRQEIAAQADIPPNFLAKIAQDLAKTGLIEIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG+ L R    I++L+VV+      ++ +C A     C     C +  V   A +   
Sbjct: 61  ARGGLVLNRHPAAISLLEVVEIMIGEIYLNDCVA-RPAACKAQRYCAVHRVWLDARDQLR 119

Query: 120 DVLTQYSIECL 130
           D L + + + L
Sbjct: 120 DTLRRVNFDQL 130


>gi|220904115|ref|YP_002479427.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868414|gb|ACL48749.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 138

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +T Y  R+L+Y A +  + P   S +A    IS  F+ +IL+ L  AGI  +VRG
Sbjct: 1  MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L R  +++T   +V   E    ++ C 
Sbjct: 61 AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCL 93


>gi|308176299|ref|YP_003915705.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743762|emb|CBT74734.1| putative transcriptional regulator [Arthrobacter arilaitensis
           Re117]
          Length = 152

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +R +M  A          +I+E+  +    + K +  L   GI++  RGR
Sbjct: 1   MKLSAFTDVCLRTIMVLATPGTGQLTSREISESVGVPYNHVAKAVLELRTLGILQVTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118
            GG  L   A + ++  +++  ++   + +C + H  + +CPL G+C L +V R+A  AF
Sbjct: 61  NGGAMLTGAALESSLGGLLRKLDKRTDIVDC-SDHDAQSNCPLAGNCRLRAVFRQAREAF 119

Query: 119 FDVLTQYSIE 128
           +  L    I+
Sbjct: 120 YASLDALKIQ 129


>gi|169351211|ref|ZP_02868149.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM
          1552]
 gi|169292273|gb|EDS74406.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM
          1552]
          Length = 147

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L    +  I +L+  A H+D   P +   I+++  +S+ +L KI++ LV AG++ +  
Sbjct: 1  MKLKNSVEQAICLLIMIA-HSDEKTPLKSYNISKSLGVSDSYLKKIIRQLVVAGLITSEA 59

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G++GGV L +  D+IT+LD+ +A E
Sbjct: 60 GKKGGVSLKKSPDKITLLDIFEAIE 84


>gi|146328986|ref|YP_001209737.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
 gi|146232456|gb|ABQ13434.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
          Length = 141

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A+   I+     K+L+ L+K  IV++VRG  GG RL + A+ IT L+VV   E    + 
Sbjct: 30  LAKKTGIAAPMASKVLKRLLKGDIVQSVRGAYGGYRLAKAAETITALEVVAVIEGMPELV 89

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           EC   +K +C L  +C ++   ++   A   +L   ++  + R+ +
Sbjct: 90  ECVDQNK-NCDLSSNCPISPFWQQMNQAIETMLAAKTLADMQRDEN 134


>gi|297539149|ref|YP_003674918.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
 gi|297258496|gb|ADI30341.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
          Length = 176

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 20/157 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIA----------------EACCISELFLFKI 44
           M LT +  + +  ++  A+H    N  S++A                E   IS  +L ++
Sbjct: 1   MKLTTKGRFAVTAMLDLALHEALANSESKLAGSELNEIKPVTLAGISERQSISLSYLEQL 60

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
              L + G+V +VRG  GG +L +    I++ +++ A +E      C      +C   G 
Sbjct: 61  FSRLRRQGLVNSVRGPGGGYKLAKNYADISVAEIINAVDEQIDATHCGGQE--NCKDEGR 118

Query: 105 CGLTSVLRKALNA-FFDVLTQYSIECLVRNRSSIKKI 140
           C +T  L   LN    D L   S+  +V +++S KK+
Sbjct: 119 C-MTHDLWSTLNTKILDYLAGVSLADMVASQTSDKKV 154


>gi|312115582|ref|YP_004013178.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220711|gb|ADP72079.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 158

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A  ND  P  +S I+    +S  +L ++   L + GIV++VRG
Sbjct: 1   MLLSTKGRYAVMAIVEVARQNDARPLALSDISLRLDLSLAYLEQLFMKLRRKGIVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG  L R AD I+I +V+ A +E   +  C    K  C
Sbjct: 61  PGGGYILARNADAISIGEVMAAVDEPVRMTRCEPEDKAGC 100


>gi|302869746|ref|YP_003838383.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
          ATCC 27029]
 gi|315503772|ref|YP_004082659.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp.
          L5]
 gi|302572605|gb|ADL48807.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
          ATCC 27029]
 gi|315410391|gb|ADU08508.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp.
          L5]
          Length = 147

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 1  MHLTKRTDYGIRVLMY---CAIHNDYPN-------RISQIAEACCISELFLFKILQPLVK 50
          M+++ R DY +R ++     A+    P        + + +AE+  I   FL  IL  L +
Sbjct: 1  MYISARADYALRAMLAVADAAVTTGDPAAGGGELVKAASLAESQGIPLSFLQGILLDLRR 60

Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          AG++ + RG  GG  L RP D+I++ DV++A
Sbjct: 61 AGLLHSHRGTEGGYALTRPPDEISVGDVLRA 91


>gi|15807906|ref|NP_285565.1| hypothetical protein DR_A0242 [Deinococcus radiodurans R1]
 gi|6460690|gb|AAF12395.1|AE001863_20 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 149

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRGR 60
           ++  +Y +R  +  A       R    AE   +SE+   +LFK++  LV+AG+V   RG+
Sbjct: 17  SQTAEYALRATVMLAEQG----RALSAAELARLSEVPPPYLFKVMGQLVRAGVVTAQRGK 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG RL R A  IT+L+VV A +    +  C
Sbjct: 73  NGGYRLGRAAGDITVLEVVNAVDPLPRIRHC 103


>gi|289550608|ref|YP_003471512.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
          HKU09-01]
 gi|315658103|ref|ZP_07910975.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
          M23590]
 gi|289180140|gb|ADC87385.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
          HKU09-01]
 gi|315496432|gb|EFU84755.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
          M23590]
          Length = 140

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IA    +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAAENSLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESE 96


>gi|257792012|ref|YP_003182618.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|257475909|gb|ACV56229.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
          Length = 144

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R LM C        +++  +++E   IS  +L ++ +PLV+AG++ +VR
Sbjct: 1   MLVSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105
           G+ GG  L +    I   DV++A E S     C      + CP  G C
Sbjct: 60  GKGGGYALAQEPAAIRAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 107


>gi|238926961|ref|ZP_04658721.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238885195|gb|EEQ48833.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 147

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A       P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGIASMVFLARSYGTSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L RP   IT  +++ A E +       AS K++        L  +L + L   
Sbjct: 61  GSQGGYQLARPPHAITAYEILSAIEIALIERTGSASEKME-------KLNFILSRDL--- 110

Query: 119 FDVLTQ 124
           FDVL Q
Sbjct: 111 FDVLDQ 116


>gi|291301253|ref|YP_003512531.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570473|gb|ADD43438.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 149

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 15/106 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R  +      +      ++A A  I   F   IL  L + G++E+ RG 
Sbjct: 1   MRLSARVDYALRAAVELTSVGEEWLSAEKVAGAQKIPGKFCESILLQLRRGGLIESRRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
            GG RL RPA +I++ DV++                +D PLVG  G
Sbjct: 61  DGGHRLARPAKEISLADVIRV---------------VDGPLVGVRG 91


>gi|74316354|ref|YP_314094.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055849|gb|AAZ96289.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 154

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++ + Y ++ L+Y A   D  P     IA    +   +L KILQ L K  ++ + RG
Sbjct: 1   MILSRTSQYAVQALIYMATQPDATPVLNKDIAAKLGVPAPYLAKILQSLAKGNLLFSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101
           R GG  L    ++IT++ +   TE   F   C       S +  CPL
Sbjct: 61  RLGGFCLREGGEKITLMQIFLLTEGPAFTQSCLLGLKKCSDETACPL 107


>gi|309791704|ref|ZP_07686195.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
          DG6]
 gi|308226254|gb|EFO79991.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
          DG6]
          Length = 146

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + DY +R L   A H    P +  +IA    I   +L  +L  L KAG++E++RG
Sbjct: 1  MRISNKGDYALRALFDLAQHIGRGPIQSDEIATRQGIPVNYLNHLLISLRKAGLIESLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L R  + IT+L++ +  E     AE
Sbjct: 61 SQGGHLLARSPESITLLEIFEVVEGQLLCAE 91


>gi|81429434|ref|YP_396435.1| hypothetical protein LSA1822 [Lactobacillus sakei subsp. sakei
          23K]
 gi|78611077|emb|CAI56130.1| Hypothetical protein LCA_1822 [Lactobacillus sakei subsp. sakei
          23K]
          Length = 171

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%)

Query: 37 SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          S+ +L KI++ LV AG+V++V G  GG  L RPA +++I DVV ATE
Sbjct: 38 SQTYLRKIIRKLVVAGLVKSVSGNSGGFTLARPASEVSIYDVVLATE 84


>gi|332284622|ref|YP_004416533.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
 gi|330428575|gb|AEC19909.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
          Length = 168

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
          +AE   +S  +L K LQ L  AGIV T+ G +GG RL R   +IT+LD+V A E S    
Sbjct: 31 LAEFHGVSASYLLKHLQALSGAGIVHTLPGPKGGYRLARQPAKITLLDIVLAVEGSSPAF 90

Query: 90 EC 91
           C
Sbjct: 91 RC 92


>gi|319652366|ref|ZP_08006482.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
          2_A_57_CT2]
 gi|317395828|gb|EFV76550.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
          2_A_57_CT2]
          Length = 164

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y +  L+Y   H  D    I +++    +SE +L KI   L K GIV +V G
Sbjct: 1  MQYSIGVEYALHCLVYLIDHTEDSSIGIKELSTFQGVSETYLSKIFSKLSKNGIVSSVPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG +L +  ++I+  DV++A E    + +C
Sbjct: 61 VKGGYKLAKSPEEISFWDVIEAVEGPKPIFQC 92


>gi|92114964|ref|YP_574892.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798054|gb|ABE60193.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
           salexigens DSM 3043]
          Length = 178

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ I++   IS  +L ++   L +A +V++VRG
Sbjct: 18  MRLTTKGRYAVTAMLDLALHADAGPISLADISKRQAISLSYLEQLFARLKRAALVKSVRG 77

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L   A+ I++  V+ A +ES     C      DC    +C    L   L   ++
Sbjct: 78  PGGGYLLAHGANAISVASVIGAVDESVDATRCQGLS--DCQQGDTCLTHHLWCDLSDKIH 135

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 136 GFLDAIT 142


>gi|88195436|ref|YP_500240.1| hypothetical protein SAOUHSC_01732 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|87202994|gb|ABD30804.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
          Length = 116

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  PA++I+  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESE 96


>gi|251788733|ref|YP_003003454.1| DNA-binding transcriptional regulator IscR [Dickeya zeae Ech1591]
 gi|247537354|gb|ACT05975.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + + +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDSAEIAVGSVISAVDESVDATRCQG--KEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNR 134
             L   +++ LV N+
Sbjct: 119 GFLNNITLDELVNNK 133


>gi|325292198|ref|YP_004278062.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
           sp. H13-3]
 gi|325060051|gb|ADY63742.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
           sp. H13-3]
          Length = 153

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++++  Y +R L+  A  +   P +IS IA    I + FL +IL  + K  IVE+ RG++
Sbjct: 9   ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 68

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA  IT  +V++  +       C +        DC     C +  V  +  +A
Sbjct: 69  GGYLLARPAADITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 128

Query: 118 FFDVLTQYSI 127
             ++L   ++
Sbjct: 129 TRNILFNTTV 138


>gi|114327571|ref|YP_744728.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114315745|gb|ABI61805.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 149

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          I V++    H    N +S   IAE   ++   +  +LQ L +AG++E+VRG RGG RL R
Sbjct: 12 ISVMLDVGFHGSRTNTVSAADIAERIGLARRGMEPLLQSLSRAGLLESVRGPRGGYRLGR 71

Query: 69 PADQITILDVV 79
          P   I + D+V
Sbjct: 72 PKRDIRVSDIV 82


>gi|288923812|ref|ZP_06417900.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
 gi|288344839|gb|EFC79280.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V++ RG 
Sbjct: 1  MQISARADYALRALLTLAASDGNLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG +LCRPA+ ITI  V++AT+
Sbjct: 61 DGGYQLCRPAEDITIATVIRATD 83


>gi|284006761|emb|CBA72019.1| iron-sulfur cluster transcriptional regulator [Arsenophonus
           nasoniae]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKTGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I I  V+ A +ES     C    +  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAKTIFIAQVISAVDESVDATRCHGRRE-GCQGGERCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNR 134
             L+  S+E LV N+
Sbjct: 120 SFLSNISLEELVNNQ 134


>gi|218248538|ref|YP_002373909.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           8801]
 gi|257061606|ref|YP_003139494.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           8802]
 gi|218169016|gb|ACK67753.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           8801]
 gi|256591772|gb|ACV02659.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           8802]
          Length = 147

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ Y ++ L+  ++  +Y P  +  IA    +   +L K+L  + ++G+V++VRG
Sbjct: 1   MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIALRQDLPAPYLEKLLIEMRRSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            +GG +L     QI++  +++A  E+    E    ++ D    GS  +T  L K L+
Sbjct: 61  SQGGYQLAYQPSQISLGQILEAVGETI---EPLPGYQPDIE-QGSDWVTFSLWKRLH 113


>gi|167621776|ref|YP_001676561.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167351517|gb|ABZ74247.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 141

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          G+ ++    +H D     S I E+       +  +L  L KAG+V T RGR G   L R 
Sbjct: 11 GVHIMQVLHVHADRKITSSFITESVNTDAGSVRLVLSKLAKAGLVTTTRGRGGSSALARA 70

Query: 70 ADQITILDVVKAT 82
          AD IT+LD+ +AT
Sbjct: 71 ADTITMLDIYRAT 83


>gi|118479660|ref|YP_896811.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|228948230|ref|ZP_04110514.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229032151|ref|ZP_04188127.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|229163495|ref|ZP_04291446.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|229175215|ref|ZP_04302731.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
 gi|229186740|ref|ZP_04313898.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|118418885|gb|ABK87304.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|228596753|gb|EEK54415.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228608351|gb|EEK65657.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
 gi|228620064|gb|EEK76939.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|228729157|gb|EEL80157.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|228811588|gb|EEM57925.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
           +GG  L R  ++IT+LDV KA  E     + F+ H+   I+CP+  +    L  +L +A 
Sbjct: 68  KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
            A  +VL   +++ LV N  S  K
Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150


>gi|30264575|ref|NP_846952.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42783680|ref|NP_980927.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47530042|ref|YP_021391.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187398|ref|YP_030650.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49481494|ref|YP_038559.1| Rrf2 family protein; transcriptional regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140996|ref|YP_085834.1| Rrf2 family protein; transcriptional regulator [Bacillus cereus
           E33L]
 gi|165871451|ref|ZP_02216098.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167635603|ref|ZP_02393915.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167641682|ref|ZP_02399927.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170688290|ref|ZP_02879500.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170708378|ref|ZP_02898822.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177653127|ref|ZP_02935414.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190566975|ref|ZP_03019891.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034358|ref|ZP_03101767.1| rrf2 family protein [Bacillus cereus W]
 gi|196039250|ref|ZP_03106556.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|196044861|ref|ZP_03112095.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|206969656|ref|ZP_03230610.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206977724|ref|ZP_03238615.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217961991|ref|YP_002340561.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218235575|ref|YP_002369303.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218899663|ref|YP_002448074.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218905732|ref|YP_002453566.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222097974|ref|YP_002532031.1| rrf2 family protein; transcriptional regulator [Bacillus cereus Q1]
 gi|225866481|ref|YP_002751859.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227817288|ref|YP_002817297.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229601070|ref|YP_002868788.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254687004|ref|ZP_05150862.1| RRF2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724567|ref|ZP_05186350.1| RRF2 family protein [Bacillus anthracis str. A1055]
 gi|254736610|ref|ZP_05194316.1| RRF2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741648|ref|ZP_05199335.1| RRF2 family protein [Bacillus anthracis str. Kruger B]
 gi|254754754|ref|ZP_05206789.1| RRF2 family protein [Bacillus anthracis str. Vollum]
 gi|254757586|ref|ZP_05209613.1| RRF2 family protein [Bacillus anthracis str. Australia 94]
 gi|296504983|ref|YP_003666683.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|301056017|ref|YP_003794228.1| Rrf2 family protein; putative transcriptional regulator [Bacillus
           anthracis CI]
 gi|30259233|gb|AAP28438.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42739609|gb|AAS43535.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47505190|gb|AAT33866.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181325|gb|AAT56701.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49333050|gb|AAT63696.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974465|gb|AAU16015.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus E33L]
 gi|164712748|gb|EDR18278.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167510389|gb|EDR85790.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167529023|gb|EDR91778.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170126753|gb|EDS95636.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170667796|gb|EDT18549.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172081651|gb|EDT66722.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190561966|gb|EDV15935.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992900|gb|EDX56859.1| rrf2 family protein [Bacillus cereus W]
 gi|196024349|gb|EDX63022.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|196029877|gb|EDX68478.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206735344|gb|EDZ52512.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206744025|gb|EDZ55441.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217066878|gb|ACJ81128.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218163532|gb|ACK63524.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218536473|gb|ACK88871.1| rrf2 family protein [Bacillus cereus AH820]
 gi|218544856|gb|ACK97250.1| rrf2 family protein [Bacillus cereus G9842]
 gi|221242032|gb|ACM14742.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus Q1]
 gi|225785815|gb|ACO26032.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227005099|gb|ACP14842.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229265478|gb|ACQ47115.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|296326035|gb|ADH08963.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|300378186|gb|ADK07090.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus biovar anthracis str. CI]
 gi|324328400|gb|ADY23660.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942291|gb|AEA18187.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 143

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
           +GG  L R  ++IT+LDV KA  E     + F+ H+   I+CP+  +    L  +L +A 
Sbjct: 60  KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 118

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
            A  +VL   +++ LV N  S  K
Sbjct: 119 EAMENVLANVTVDQLVTNLKSKMK 142


>gi|255525184|ref|ZP_05392127.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296187437|ref|ZP_06855832.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
 gi|255511143|gb|EET87440.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296047959|gb|EFG87398.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
          Length = 144

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ LM  A++ N     +  I+E   ISE +L +I   L K+G+V   +G
Sbjct: 1   MKISTKGRYGLKALMDIAMYSNSEAVTLKSISERQNISEGYLEQIFSALRKSGLVIGKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG  L +    ITI ++++  E +  + +     + D   +  C    L   + K +N
Sbjct: 61  AQGGYTLSKHISTITIGEILRTLEGNLSLVDI--RDRDDADELERCINENLWDAINKNIN 118

Query: 117 AFFDVLTQYSIECLVRNRSS 136
            +FD +T   +E LV    S
Sbjct: 119 DYFDSIT---LEDLVNKYKS 135


>gi|154253702|ref|YP_001414526.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154157652|gb|ABS64869.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  Y +  +   A H+   P  +++IA+   IS  +L ++   L +  +V++VRG  
Sbjct: 8   LTTKGRYAVMAMADLARHSSGSPVALAEIADRQEISLSYLEQLFAKLRRGDLVKSVRGPG 67

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L R AD I I DV+ A +E      C   S K   P  G C +T  L + L+    
Sbjct: 68  GGYLLSREADSIRISDVILAVDEPIKATRCDLGSPKGCMPSSGRC-ITHDLWEGLSHQIQ 126

Query: 121 V-LTQYSIECLVRNRSSIKKIFNA 143
           + L   S+  ++  R + K  F+A
Sbjct: 127 LYLGSVSLGDVIDGRIAGKSAFDA 150


>gi|56752461|ref|YP_173162.1| hypothetical protein syc2452_d [Synechococcus elongatus PCC 6301]
 gi|81300274|ref|YP_400482.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687420|dbj|BAD80642.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169155|gb|ABB57495.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
           elongatus PCC 7942]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + L+ + +Y +  L+  A    N  P +I Q+A+   I + +L ++L  L + GIV +VR
Sbjct: 6   VELSGKCEYALLALIELARGHSNGEPQQIKQLADRQNIPDRYLEQLLATLRRGGIVRSVR 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL--- 115
           G RGG  L R   QI++ DVV   + +    E   +  ID   V      ++ R+ L   
Sbjct: 66  GARGGYLLAREPWQISMQDVVHCIDGT----EMQRTEAIDQQSV------TIERQILVDI 115

Query: 116 -----NAFFDVLTQYSIECLV---RNRSSIKKIF 141
                 A  DVL  YS++ L+    NR+S   ++
Sbjct: 116 NVELCKAVEDVLAAYSLQDLLEIRENRASTDLMY 149


>gi|326797990|ref|YP_004315809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sphingobacterium sp. 21]
 gi|326548754|gb|ADZ77139.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
           21]
          Length = 145

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K++ Y I+ L+     +   P +I +IAE   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKSKYAIKALIVLGKNYGKEPMQILKIAEEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I +  V++ T+    +  C    F     +C    +CG+        NA
Sbjct: 62  GGYSLNKDPEDIRLSQVIRLTDGPIALLPCVSLNFYRRCDECKTEETCGIRDTFVDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   SI  +++   ++
Sbjct: 122 MLQILNDTSIADIIKREENL 141


>gi|254445085|ref|ZP_05058561.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
 gi|198259393|gb|EDY83701.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
          Length = 137

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ + DY  R L   A        +RI ++A+   I   +L +IL  L   G++E+ R
Sbjct: 1   MKLSVKLDYACRALARMASRRPSGELSRIEELADVEAIPANYLVQILGELRNGGLIESRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G++GG  L R  ++IT+ +V+     +    + F S  +  P+ GS    S + K     
Sbjct: 61  GKQGGYLLARAPEEITLREVI-----ALVQGDVFGS--VANPVGGSG---STVAKTWKVL 110

Query: 119 FDVLTQYSIECLVRN 133
            D   Q + E  VR+
Sbjct: 111 QDCFEQKASELTVRD 125


>gi|186683177|ref|YP_001866373.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465629|gb|ACC81430.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 146

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++   Y P  +  IA+   I   +L K+L  + +A IV+++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPKYGPVSVRAIAKRQDIPAPYLEKLLIEMRRASIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG +L R   QI+I  +++A  E+  +      H    P      +T  L + LN
Sbjct: 61  SIGGYQLAREPAQISIGQILEAVGETSHLP-----HHTPAPTQAEDWVTFSLWQRLN 112


>gi|325983001|ref|YP_004295403.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
           AL212]
 gi|325532520|gb|ADZ27241.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
           AL212]
          Length = 162

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  A+  + +P  ++ I++   IS  +L ++   L ++ +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDLALQQSSHPITLADISQRQKISLSYLEQLFAKLRQSELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D+++I D++ A +E     +C    K +C   G C    +  K     F
Sbjct: 61  PGGGYCLSKDLDKVSIADIILAVDEPIDATQCGG--KENCHNDGKCMTHDLWAKLNELIF 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV N+
Sbjct: 119 EYLGAVTLKELVDNQ 133


>gi|238765525|ref|ZP_04626441.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii
          ATCC 33638]
 gi|238796770|ref|ZP_04640276.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
          43969]
 gi|238696264|gb|EEP89065.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii
          ATCC 33638]
 gi|238719501|gb|EEQ11311.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
          43969]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSHDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A  I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92


>gi|323490017|ref|ZP_08095238.1| putative HTH-type transcriptional regulator [Planococcus
          donghaensis MPA1U2]
 gi|323396313|gb|EGA89138.1| putative HTH-type transcriptional regulator [Planococcus
          donghaensis MPA1U2]
          Length = 138

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIDLAKHYGEGPLPLRKIAAQNDLSEAYLEQLVGPLRNSGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L R   +I+  DV++  E      E     K
Sbjct: 61 AYGGYMLTRHPKEISAGDVIRVLEGPIQPVEGIEDEK 97


>gi|210610735|ref|ZP_03288595.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
 gi|210152299|gb|EEA83306.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
          Length = 483

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A      +  S+++    +S  ++ KI + L  A IV    G 
Sbjct: 1   MQLKNSTDYAIRIVCYLAAQERMVS-TSELSRKLNVSANYVPKIAKKLKNAKIVTACEGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
            GG  L +  + I++++++   EE+  +  C    +  C   L  +C +  +L    N +
Sbjct: 60  NGGYMLAKQPENISLMEIISCVEETMAINRCLEEDRF-CSRNLEDTCKIHKILLSLQNTY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    +  ++R
Sbjct: 119 NNKLESVKVSDVIR 132


>gi|30022586|ref|NP_834217.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|29898144|gb|AAP11418.1| RRF2 family protein [Bacillus cereus ATCC 14579]
          Length = 145

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 3   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
           +GG  L R  ++IT+LDV KA  E     + F+ H+   I+CP+  +    L  +L +A 
Sbjct: 62  KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
            A  +VL   +++ LV N  S  K
Sbjct: 121 EAMENVLANVTVDQLVTNLKSKMK 144


>gi|23015553|ref|ZP_00055325.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A H    P  I+ IA++  I + FL  IL  +    ++ + +G+ 
Sbjct: 4   LSSKAKYGLKAMVYLARHEGLGPVLIADIAQSERIPKKFLDAILLEMKNQKLLSSKKGKG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L  PA +I + D+V+  +       C +        DC    +C + +V++   +A
Sbjct: 64  GGYTLAMPAARIMVGDIVRVLDGPLAPVSCVSRSAYRACDDCTDEAACTIRAVMQDVRDA 123

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
              +L   ++  +   R   + + 
Sbjct: 124 IAAILDNTTLADMANRRGRPEPVL 147


>gi|282896000|ref|ZP_06304031.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
          D9]
 gi|281199110|gb|EFA73980.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
          D9]
          Length = 147

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA    I   +L K+L  +  AG+V ++RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPKYGPGSVKAIASRQEIPAAYLEKLLIEMRHAGLVHSLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
            GG +L +   QI+I ++++A  E+ 
Sbjct: 61 SVGGYKLAKHPQQISIGEILEAVGENI 87


>gi|57242644|ref|ZP_00370581.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter upsaliensis RM3195]
 gi|57016573|gb|EAL53357.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter upsaliensis RM3195]
          Length = 133

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y +     P  +  +A    I + FL KILQ L + G++ + +G 
Sbjct: 1   MLLTKASEYALLSLIYIS-SKSTPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVG-SCGLTSV---LRKAL 115
           RGG  L R     T+ +++ + E +   V EC       CP    +C L SV   L++ +
Sbjct: 60  RGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116

Query: 116 NAFFDVLTQYSIECLVRNR 134
           + F D +T   +E ++ N 
Sbjct: 117 DNFLDSIT---LEDIINNN 132


>gi|65321873|ref|ZP_00394832.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|228903025|ref|ZP_04067164.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
 gi|228910330|ref|ZP_04074146.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
 gi|228917145|ref|ZP_04080703.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923250|ref|ZP_04086540.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228929554|ref|ZP_04092573.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935816|ref|ZP_04098628.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228941684|ref|ZP_04104231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228954776|ref|ZP_04116797.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228967601|ref|ZP_04128624.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974611|ref|ZP_04135177.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981206|ref|ZP_04141506.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|228987757|ref|ZP_04147868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229048212|ref|ZP_04193781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
 gi|229072011|ref|ZP_04205221.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|229081759|ref|ZP_04214252.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
 gi|229093603|ref|ZP_04224704.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|229111969|ref|ZP_04241513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
 gi|229124071|ref|ZP_04253263.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
 gi|229129791|ref|ZP_04258758.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229141238|ref|ZP_04269777.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|229147065|ref|ZP_04275425.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229152700|ref|ZP_04280887.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
 gi|229158115|ref|ZP_04286184.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|229180772|ref|ZP_04308110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|229192705|ref|ZP_04319664.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|229198656|ref|ZP_04325357.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
 gi|228584815|gb|EEK42932.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
 gi|228590795|gb|EEK48655.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|228602750|gb|EEK60233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|228625344|gb|EEK82102.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|228630763|gb|EEK87405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
 gi|228636453|gb|EEK92923.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228642279|gb|EEK98571.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228653707|gb|EEL09578.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228659373|gb|EEL15021.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
 gi|228671533|gb|EEL26833.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
 gi|228689812|gb|EEL43618.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228701604|gb|EEL54097.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
 gi|228711170|gb|EEL63135.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|228723199|gb|EEL74575.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
 gi|228772031|gb|EEM20486.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228778406|gb|EEM26673.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|228785014|gb|EEM33027.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228792092|gb|EEM39671.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228804896|gb|EEM51494.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817896|gb|EEM63974.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228823873|gb|EEM69693.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830133|gb|EEM75751.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228836456|gb|EEM81807.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228842563|gb|EEM87653.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228849282|gb|EEM94120.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
 gi|228856618|gb|EEN01139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
          Length = 151

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
           +GG  L R  ++IT+LDV KA  E     + F+ H+   I+CP+  +    L  +L +A 
Sbjct: 68  KGGTTLARDLEEITLLDVYKAV-EVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQ 126

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
            A  +VL   +++ LV N  S  K
Sbjct: 127 EAMENVLANVTVDQLVTNLKSKMK 150


>gi|51597176|ref|YP_071367.1| DNA-binding transcriptional regulator IscR [Yersinia
          pseudotuberculosis IP 32953]
 gi|108808332|ref|YP_652248.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
          Antiqua]
 gi|108811403|ref|YP_647170.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
          Nepal516]
 gi|145599514|ref|YP_001163590.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
          Pestoides F]
 gi|149365356|ref|ZP_01887391.1| Fe-S cluster-containing transcription factor [Yersinia pestis
          CA88-4125]
 gi|153947579|ref|YP_001400148.1| IscR family transcriptional regulator [Yersinia
          pseudotuberculosis IP 31758]
 gi|162418343|ref|YP_001605041.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
          Angola]
 gi|165928257|ref|ZP_02224089.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Orientalis str. F1991016]
 gi|166008265|ref|ZP_02229163.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. E1979001]
 gi|166212578|ref|ZP_02238613.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. B42003004]
 gi|167398867|ref|ZP_02304391.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. UG05-0454]
 gi|167421227|ref|ZP_02312980.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Orientalis str. MG05-1020]
 gi|167423261|ref|ZP_02315014.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Mediaevalis str. K1973002]
 gi|218929956|ref|YP_002347831.1| DNA-binding transcriptional regulator IscR [Yersinia pestis CO92]
 gi|229838481|ref|ZP_04458640.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229895486|ref|ZP_04510657.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
 gi|229899050|ref|ZP_04514194.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229901657|ref|ZP_04516779.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
 gi|270489849|ref|ZP_06206923.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis KIM D27]
 gi|294504543|ref|YP_003568605.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
 gi|81638849|sp|Q667Y0|ISCR_YERPS RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371156|sp|Q1C5G9|ISCR_YERPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371157|sp|Q0WD07|ISCR_YERPE RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371158|sp|Q1CKB0|ISCR_YERPN RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044755|sp|A7FFX0|ISCR_YERP3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044756|sp|A4TMV5|ISCR_YERPP RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711630|sp|A9R819|ISCR_YERPG RecName: Full=HTH-type transcriptional regulator iscR
 gi|51590458|emb|CAH22098.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
          32953]
 gi|108775051|gb|ABG17570.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
          Nepal516]
 gi|108780245|gb|ABG14303.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
          Antiqua]
 gi|115348567|emb|CAL21508.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211210|gb|ABP40617.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
          Pestoides F]
 gi|149291769|gb|EDM41843.1| Fe-S cluster-containing transcription factor [Yersinia pestis
          CA88-4125]
 gi|152959074|gb|ABS46535.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pseudotuberculosis IP 31758]
 gi|162351158|gb|ABX85106.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis Angola]
 gi|165919764|gb|EDR37097.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Orientalis str. F1991016]
 gi|165992647|gb|EDR44948.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. E1979001]
 gi|166206509|gb|EDR50989.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. B42003004]
 gi|166960716|gb|EDR56737.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Orientalis str. MG05-1020]
 gi|167051371|gb|EDR62779.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Antiqua str. UG05-0454]
 gi|167057431|gb|EDR67177.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis biovar Mediaevalis str. K1973002]
 gi|229681586|gb|EEO77680.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
 gi|229687995|gb|EEO80067.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
          Orientalis str. India 195]
 gi|229694847|gb|EEO84894.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
          Orientalis str. PEXU2]
 gi|229701292|gb|EEO89320.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
 gi|262362464|gb|ACY59185.1| hypothetical protein YPD4_2278 [Yersinia pestis D106004]
 gi|270338353|gb|EFA49130.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
          pestis KIM D27]
 gi|294355002|gb|ADE65343.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
 gi|320016040|gb|ADV99611.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
          Medievalis str. Harbin 35]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A  I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92


>gi|257455232|ref|ZP_05620467.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
           aerosaccus SK60]
 gi|257447194|gb|EEV22202.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
           aerosaccus SK60]
          Length = 204

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  A+    ++    +S IA+   IS  +L ++   L K G+V + 
Sbjct: 1   MRLTTRGRYAVTALLDLALQEQKHELAVSLSDIAKRQEISISYLEQLFSKLRKKGLVVST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  + +P ++I+I+ ++ A +ES     C    K +C     C LT  L   L+ 
Sbjct: 61  RGASGGYHIAKPINEISIMSIISAVDESVDARACEG--KGNCQDGAMC-LTHDLWNGLSE 117

Query: 118 FFD-VLTQYSIECLVRNRSSIKKI 140
             +  L+  +++ L+ NR  I++I
Sbjct: 118 QIENYLSTVTLDTLI-NRQIIREI 140


>gi|123441401|ref|YP_001005388.1| DNA-binding transcriptional regulator IscR [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|238788188|ref|ZP_04631983.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
          ATCC 33641]
 gi|332162656|ref|YP_004299233.1| DNA-binding transcriptional regulator IscR [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|189044754|sp|A1JKQ1|ISCR_YERE8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|122088362|emb|CAL11153.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|238723775|gb|EEQ15420.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
          ATCC 33641]
 gi|318606762|emb|CBY28260.1| iron-sulfur cluster regulator IscR [Yersinia enterocolitica
          subsp. palearctica Y11]
 gi|325666886|gb|ADZ43530.1| DNA-binding transcriptional regulator IscR [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859250|emb|CBX69600.1| HTH-type transcriptional regulator iscR [Yersinia enterocolitica
          W22703]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A  I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC 92


>gi|238753892|ref|ZP_04615252.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
          29473]
 gi|238707880|gb|EEQ00238.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
          29473]
          Length = 164

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQNGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A QI +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDAAQIAVGAVITAVDESVDATRC 92


>gi|27468226|ref|NP_764863.1| hypothetical protein SE1308 [Staphylococcus epidermidis ATCC
          12228]
 gi|57867116|ref|YP_188765.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
 gi|251811031|ref|ZP_04825504.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282875949|ref|ZP_06284816.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
 gi|293366417|ref|ZP_06613095.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|27315772|gb|AAO04907.1|AE016748_141 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57637774|gb|AAW54562.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
 gi|251805449|gb|EES58106.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281294974|gb|EFA87501.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
 gi|291319451|gb|EFE59819.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329724645|gb|EGG61151.1| HTH-type transcriptional regulator CymR [Staphylococcus
          epidermidis VCU144]
 gi|329735208|gb|EGG71500.1| HTH-type transcriptional regulator CymR [Staphylococcus
          epidermidis VCU045]
          Length = 140

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  P+++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSE 96


>gi|304436329|ref|ZP_07396306.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370684|gb|EFM24332.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 175

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A   D   P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 29  MKISAKGRYGIASMVFLARSYDTSSPVTIISISEHLGISKIYLEQVFALLKRSKLVNSIK 88

Query: 59  GRRGGVRLCRPADQITILDVVKATE 83
           G +GG +L RP   IT  D++ A E
Sbjct: 89  GSQGGYQLARPPHDITAYDILSAIE 113


>gi|315638496|ref|ZP_07893673.1| rrf2 family protein [Campylobacter upsaliensis JV21]
 gi|315481487|gb|EFU72114.1| rrf2 family protein [Campylobacter upsaliensis JV21]
          Length = 133

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y +     P  +  +A    I + FL KILQ L + G++ + +G 
Sbjct: 1   MLLTKASEYALLSLIYIS-SKSTPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVG-SCGLTSV---LRKAL 115
           +GG  L R     T+ +++ + E +   V EC       CP    +C L SV   L++ +
Sbjct: 60  KGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116

Query: 116 NAFFDVLTQYSIECLVRNR 134
           + F D +T   +E +++N 
Sbjct: 117 DNFLDSIT---LEDIIKNN 132


>gi|242242899|ref|ZP_04797344.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242233674|gb|EES35986.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|319400953|gb|EFV89172.1| rrf2 family protein [Staphylococcus epidermidis FRI909]
          Length = 140

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  P+++IT  D+++  E      E   S 
Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSE 96


>gi|206602829|gb|EDZ39310.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 141

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R +Y +R L+  A+  D     +QIA    I + FL +IL  LVK GIVE+ RG R
Sbjct: 4   RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63

Query: 62  GGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           G   L +  + I++  ++   E    FF         I         L S +R  L    
Sbjct: 64  GKYCLGQRPEDISLYRLLAMVEGEIVFFDPATPPGPAIQT-------LYSDIRDGLVGVL 116

Query: 120 DVLTQYS-IECLVRNRSSIKKIF 141
           D  T  + +E   ++RS  + +F
Sbjct: 117 DRFTLDAFVEAAGKDRSETRPMF 139


>gi|149185219|ref|ZP_01863536.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
 gi|148831330|gb|EDL49764.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+   DY +  +   A H        S++A    +    + K++  L  AG++ +VRG
Sbjct: 1  MRLSNLADYAVVTMSQAARHCGGGRVSASELAAETGLPAPTVQKLVSKLTAAGLLRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
            GG++L RPA  IT+ D+V+A E    +  C 
Sbjct: 61 AGGGLQLARPAAAITLADIVEAVEGPIALTACI 93


>gi|331270571|ref|YP_004397063.1| rrf2 family protein [Clostridium botulinum BKT015925]
 gi|329127121|gb|AEB77066.1| rrf2 family protein (putative transcriptional regulator)
          [Clostridium botulinum BKT015925]
          Length = 139

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+  DY +R+++Y C +          IAE   I   FL KIL+ L ++GIVE+ RG
Sbjct: 1  MKITQEVDYALRIVLYLCKLGFGEKIEAKFIAEHENIPIRFLLKILRKLKQSGIVESFRG 60

Query: 60 RRGGVRLCR-PADQITILDVVKATEESFFVAECFASHK 96
            GG  L + PAD I+  D++ + +   ++  C    K
Sbjct: 61 INGGYALNKYPAD-ISFKDIIISIDGPIYMNRCLYDPK 97


>gi|269140159|ref|YP_003296860.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
           EIB202]
 gi|267985820|gb|ACY85649.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
           EIB202]
 gi|304559993|gb|ADM42657.1| Iron-sulfur cluster regulator IscR [Edwardsiella tarda FL6-60]
          Length = 165

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I I  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKEASEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHALWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+  LV N+
Sbjct: 119 GFLNNISLAELVNNQ 133


>gi|238758817|ref|ZP_04619990.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
           35236]
 gi|238702925|gb|EEP95469.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
           35236]
          Length = 185

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG  L + A  I +  V+ A +ES     C
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113


>gi|226363891|ref|YP_002781673.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226242380|dbj|BAH52728.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 154

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 3   LTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++ +   G+   ++C +     + P   +++A+   +S+ +L K LQ L +AG+V    G
Sbjct: 1   MSMKISGGVEWSLHCCVVLSQAEGPVPTARLADLHGVSKSYLAKHLQSLARAGLVHPTEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
           R GG  L R    IT+LDVV+A + +     C         A+    C     CG+  V+
Sbjct: 61  RDGGYVLTRAPADITVLDVVQAVDGAGPAFRCTEIRQQGLLAAPPEQCKT--PCGIAKVM 118

Query: 112 RKALNAFFDVLTQYSI 127
            +A  A+   L+  +I
Sbjct: 119 AEAERAWRASLSGVTI 134


>gi|310643521|ref|YP_003948279.1| hth-type transcriptional regulator cymr [Paenibacillus polymyxa
          SC2]
 gi|309248471|gb|ADO58038.1| HTH-type transcriptional regulator cymR [Paenibacillus polymyxa
          SC2]
          Length = 139

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L      +T  D+++  E
Sbjct: 61 AYGGYILANEPSGVTAGDIIRVLE 84


>gi|291037439|ref|ZP_06568403.1| transcriptional regulator BadM/Rrf2 [Gluconacetobacter xylinus NBRC
           3288]
          Length = 136

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ RTDY  RVL++ A + D    +  I E   IS   L K++Q L  AGIV+  RG 
Sbjct: 1   MRLSLRTDYAFRVLIHLACNPDSRVTVRNITELHGISHNHLVKVVQHLCHAGIVQGTRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL   A  I +  +++  E E      C +S    C L  +C    ++ +A++AF 
Sbjct: 61  TGGIRLAVSARNINVGHIMRLMETEKESPGACHSSGNNQCILGNACQFRHLIVQAVDAFM 120


>gi|113460426|ref|YP_718488.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
          129PT]
 gi|112822469|gb|ABI24558.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
          129PT]
          Length = 135

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1  MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG +L    +QI+I  V+ A  E+  V +C  +   DC
Sbjct: 61 PGGGYQLGLSTEQISIGMVINAVNENINVTKCLGNG--DC 98


>gi|22125232|ref|NP_668655.1| DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10]
 gi|45442337|ref|NP_993876.1| DNA-binding transcriptional regulator IscR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|170023521|ref|YP_001720026.1| DNA-binding transcriptional regulator IscR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896270|ref|YP_001873382.1| DNA-binding transcriptional regulator IscR [Yersinia
           pseudotuberculosis PB1/+]
 gi|21958101|gb|AAM84906.1|AE013736_2 hypothetical protein y1333 [Yersinia pestis KIM 10]
 gi|45437201|gb|AAS62753.1| Predicted transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169750055|gb|ACA67573.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699296|gb|ACC89925.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 185

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG  L + A  I +  V+ A +ES     C
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113


>gi|315633897|ref|ZP_07889186.1| iron-sulfur cluster assembly transcription regulator IscR
           [Aggregatibacter segnis ATCC 33393]
 gi|315477147|gb|EFU67890.1| iron-sulfur cluster assembly transcription regulator IscR
           [Aggregatibacter segnis ATCC 33393]
          Length = 160

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH D  P  +S I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAIHADNGPVSLSDISERQHISLSYLEQLFAKLRRNNLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    + I+I  ++ A  E+    +C    K +C     C   ++  K      
Sbjct: 61  PGGGYKLGHMPEDISIGMIIAAVNENIDTTKCLG--KGNCQNGQECLTHTLWDKLSQRIA 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L + ++  LV      K
Sbjct: 119 DFLNEITLAELVSQHKQKK 137


>gi|238795105|ref|ZP_04638696.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
           29909]
 gi|238725553|gb|EEQ17116.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
           29909]
          Length = 185

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG  L + A  I +  V+ A +ES     C
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC 113


>gi|218887633|ref|YP_002436954.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758587|gb|ACL09486.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 264

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   + YG R+++  A H+   P  +  +A    +S+ +L KI + L +AG++ + RG
Sbjct: 1   MRLLTNSRYGTRMMLDIAQHSRLGPVLMRDVARRLDVSQKYLEKISRSLKEAGLLTSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  D I++ DVV+  E    +  C    + +C     C    V ++   A F
Sbjct: 61  PSGGHRLGRAPDDISVGDVVRVLEGGAEMVGCGRDEE-NCTHAPGCLTRMVWKECSRAMF 119

Query: 120 DVLTQYSIECLVR 132
             L   +   L+R
Sbjct: 120 ARLDAITFGELLR 132


>gi|116669235|ref|YP_830168.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609344|gb|ABK02068.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
          Length = 149

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R +M  A   D     +Q IA+A       + K +  L + G+++  RG
Sbjct: 1   MKINAFADVSLRAMMVLAAAPDGNLLTTQSIADAVGTPYNHVSKAMARLRELGVIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL     + T+  +++        A+C  S   DCPL+  C L   L +A  AF+
Sbjct: 61  RNGGSRLNEAGRRATVGQLLRQLNTRTDPADCH-SLNGDCPLINECRLRGALARAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L    +  L   R  +  +F A
Sbjct: 120 RELDDIVVSTLPGTR-QMAPVFQA 142


>gi|228475199|ref|ZP_04059925.1| Rrf2 family protein [Staphylococcus hominis SK119]
 gi|314936260|ref|ZP_07843607.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
 gi|228270810|gb|EEK12212.1| Rrf2 family protein [Staphylococcus hominis SK119]
 gi|313654879|gb|EFS18624.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
          Length = 140

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ ++RG
Sbjct: 1  MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG +L  P+++I+  D+++  E    + E   S 
Sbjct: 61 AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSE 96


>gi|169333997|ref|ZP_02861190.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258714|gb|EDS72680.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
           17244]
          Length = 143

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A + D     + ++++   IS  +L +I   L K G + +VRG
Sbjct: 1   MKISTKGRYALRLMIDLAKNYDGKYITLKEVSKRQDISIKYLEQITTQLCKVGYLNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L +   + T  D+++ TE S     C  + +  C   GSC      +   N   
Sbjct: 61  PKGGYKLAKEPREYTAGDILRVTEGSLAPIACLEAEENACTRSGSCATLPFWKGLYNVIE 120

Query: 120 DVLTQYSIECLVRNRSS 136
           + +   ++E L+ +   
Sbjct: 121 NYVNNVTLEDLLDDEKD 137


>gi|159026192|emb|CAO88841.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 147

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  + +AG+V + RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
           +GG +L RPA++I++  +++A  E+
Sbjct: 61 SQGGYQLARPANRISLGQILEAVGET 86


>gi|260771408|ref|ZP_05880333.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
 gi|260613534|gb|EEX38728.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
 gi|315180989|gb|ADT87903.1| HTH-type transcriptional regulator iscR [Vibrio furnissii NCTC
           11218]
          Length = 163

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGSD 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSI- 127
           A+ I+I  V+ A +ES    +C  + K DC     C LT  L + L++   D L   ++ 
Sbjct: 61  ANTISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSSRISDFLNNITLG 117

Query: 128 ECLVRNR 134
           E ++ N 
Sbjct: 118 ELMIDNE 124


>gi|13471643|ref|NP_103209.1| hypothetical protein mlr1674 [Mesorhizobium loti MAFF303099]
 gi|14022386|dbj|BAB48995.1| mlr1674 [Mesorhizobium loti MAFF303099]
          Length = 149

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++  ++       ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|116748731|ref|YP_845418.1| BadM/Rrf2 family transcriptional regulator [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697795|gb|ABK16983.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 133

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R++Y +  L+Y A H       +  IA A  I   FL +IL  L  A  + + +G
Sbjct: 1  MRLTCRSEYALLALVYLARHQGETFIPVPAIAAAQGIPPKFLEQILLSLRLAKYLHSSKG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          + GG RL +PAD IT+ ++++
Sbjct: 61 KNGGFRLAKPADTITLAEIIR 81


>gi|223935695|ref|ZP_03627611.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
 gi|223895703|gb|EEF62148.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
          Length = 139

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+ ++DY  R ++  A H       R+  +AE   I   +L +IL  L    IV+++R
Sbjct: 1  MKLSAKSDYAARAVIGLARHYQTGESLRVEDLAEGQGIPPNYLVQILIELKSQQIVKSLR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87
          G+ GG  L RP  +I++ DV++      F
Sbjct: 61 GKEGGYLLARPPAEISMADVLRCVHGQVF 89


>gi|186683299|ref|YP_001866495.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465751|gb|ACC81552.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 145

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 19/149 (12%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  + +Y +  ++    +  N  P +I QIAE   I   +L ++L  L   G++ ++R
Sbjct: 1   MRLPNKFEYSLLAMLALVDSYQNGDPMQIKQIAELKGIQNRYLEQLLATLRCQGLINSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-------LVGSCGLTSVL 111
           G +GG  L R   +IT+LDV+ A E            +ID P        + S  +  V 
Sbjct: 61  GAKGGYILARDPRKITVLDVLTAIE----------GVEIDAPANNTTIDTMESSIVEEVW 110

Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIKKI 140
           ++A  A   V  ++S++ L   RS  +++
Sbjct: 111 QEACQAANFVFQKHSLQDLWERRSKRQQM 139


>gi|254361062|ref|ZP_04977207.1| possible transcriptional regulator [Mannheimia haemolytica
          PHL213]
 gi|261493610|ref|ZP_05990130.1| putative transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261495448|ref|ZP_05991896.1| putative transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|153092548|gb|EDN73603.1| possible transcriptional regulator [Mannheimia haemolytica
          PHL213]
 gi|261308953|gb|EEY10208.1| putative transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261310792|gb|EEY11975.1| putative transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 150

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L + GIV++VRG
Sbjct: 1  MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
            GG +L +  ++I++  ++ A  E+  V +C  S
Sbjct: 61 PGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGS 95


>gi|110834734|ref|YP_693593.1| rrf2 family protein [Alcanivorax borkumensis SK2]
 gi|110647845|emb|CAL17321.1| rrf2 family protein [Alcanivorax borkumensis SK2]
          Length = 154

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVG 103
             GG +L R + QI +  V+ A +ES     C             +H + C L G
Sbjct: 61  PGGGYQLSRNSGQIDVAAVIAAVDESVDATRCGGHGDCQEGDICLTHHLWCDLSG 115


>gi|52081231|ref|YP_080022.1| negative regulator of riboflavin kinase [Bacillus licheniformis
          ATCC 14580]
 gi|52786611|ref|YP_092440.1| YrzC [Bacillus licheniformis ATCC 14580]
 gi|319644802|ref|ZP_07999035.1| YrzC protein [Bacillus sp. BT1B_CT2]
 gi|52004442|gb|AAU24384.1| negative regulator of riboflavin kinase [Bacillus licheniformis
          ATCC 14580]
 gi|52349113|gb|AAU41747.1| YrzC [Bacillus licheniformis ATCC 14580]
 gi|317392611|gb|EFV73405.1| YrzC protein [Bacillus sp. BT1B_CT2]
          Length = 138

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L      IT  D+++  E      E   + +
Sbjct: 61 AYGGYILGEEPAAITAGDIIRVLEGPISPVEVLENEE 97


>gi|254423218|ref|ZP_05036936.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
 gi|196190707|gb|EDX85671.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
          Length = 134

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P RI QIA    I + +L ++L  L + G V++ RG +GG  L R   Q+++LDVV   E
Sbjct: 16  PLRICQIAAQQGIPDRYLEQLLATLRRGGFVKSQRGAKGGYLLTREPWQVSLLDVVSCIE 75

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
              F A    + ++  P      + S V ++   +   VL +Y+++ LV  R++ +++
Sbjct: 76  --GFDAN---AREVKSPQTTEGAVVSEVWQEVWRSAESVLEEYTLQDLVDKRNTRQQV 128


>gi|254410673|ref|ZP_05024452.1| rrf2 family protein (putative transcriptional regulator)
          [Microcoleus chthonoplastes PCC 7420]
 gi|196182879|gb|EDX77864.1| rrf2 family protein (putative transcriptional regulator)
          [Microcoleus chthonoplastes PCC 7420]
          Length = 147

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA+   +   +L K+L  + +A +V +VRG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPGYGPTSVKMIAQRQDLPAPYLEKLLIEMRRANLVNSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           +GG +L R   +I++  ++ A  E+    E    H+ D 
Sbjct: 61 SQGGYQLAREPSKISLGQILAAVGETI---EPLHHHQADA 97


>gi|17229573|ref|NP_486121.1| hypothetical protein alr2081 [Nostoc sp. PCC 7120]
 gi|17131172|dbj|BAB73780.1| alr2081 [Nostoc sp. PCC 7120]
          Length = 147

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y ++ L+  ++   Y P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1  MKLTTKGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG +L R   +I+I  +++A +E+
Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDET 86


>gi|154174055|ref|YP_001408761.1| RRF2 family protein [Campylobacter curvus 525.92]
 gi|112802637|gb|EAT99981.1| RRF2 family protein [Campylobacter curvus 525.92]
          Length = 138

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +    I +L+      D       IA +   + + + K+ Q L KAG++E VR  
Sbjct: 1   MQVGTKFSVSIHILLSAEFFKDEKVTSEFIASSVGTNPVIIRKLTQLLKKAGLLE-VRAG 59

Query: 61  RGGVRLCRPADQITILDVVKA-TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
            GGV L +  +QIT+LDV +A ++E   + +  A     CPL G  G  L S    A NA
Sbjct: 60  VGGVNLAKKPEQITLLDVYQAVSDEEKNLFKIHAKSPAACPLGGKIGNLLNSHFLSAQNA 119

Query: 118 FFDVLTQYSIECLV 131
               L + +++ L+
Sbjct: 120 MQKELGKVTLQDLL 133


>gi|302344421|ref|YP_003808950.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
          DSM 2075]
 gi|301641034|gb|ADK86356.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus
          baarsii DSM 2075]
          Length = 142

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +H+++     +  + Y A          +IA     SE  L K++Q L KAG+V + RG 
Sbjct: 5  IHISEAASLALHTMAYLAAEPGRKASTHEIARVMGASEAHLAKVMQRLGKAGLVVSQRGP 64

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L +  +Q+++L+V  A E       C 
Sbjct: 65 GGGFTLAKTPEQVSLLEVYAAAEGQLGEVGCL 96


>gi|254282474|ref|ZP_04957442.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR51-B]
 gi|219678677|gb|EED35026.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR51-B]
          Length = 150

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  ++ I+E   IS  +L ++   L ++G+V++VRG  GG  L R A +I++  V++A  
Sbjct: 12  PTALAGISERQDISLSYLEQLFSQLRRSGLVKSVRGPGGGYHLGRDAGEISVAAVIQAVN 71

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           ES     C    K DC    +C    +     +   D L   S+E LV
Sbjct: 72  ESTDTTRCRG--KGDCQKGDTCLTHHLWMNLSDQIHDFLEAISLEDLV 117


>gi|312887338|ref|ZP_07746939.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
 gi|311300141|gb|EFQ77209.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
          Length = 145

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    +  + P +IS+IAE   I + FL +IL  L  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVSLGKNMGNPPVQISKIAEEEKIPKKFLEQILLDLRNAGFLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA---SHKI-DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I ++ V++ T+    +  C +    HK  +C    +CG+ SV     + 
Sbjct: 62  GGYSLNKDPKEIFLVQVMRITDGPIAMVPCASLNFYHKCEECKSELTCGIRSVFIDVRDV 121

Query: 118 FFDVLTQYSI 127
              +L++ SI
Sbjct: 122 TLKILSETSI 131


>gi|296123021|ref|YP_003630799.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus
          DSM 3776]
 gi|296015361|gb|ADG68600.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
          DSM 3776]
          Length = 154

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+++ DY +R+L+  A    + P  +S++A      + FL  I+  L   G +E+  G
Sbjct: 1  MKLSRKADYALRILITLAARFGESPISLSELARMNDAPKRFLEHIVLDLKSQGWIESSPG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          R+GG  L +P +QIT+  V++
Sbjct: 61 RKGGYVLAQPPEQITMGQVIR 81


>gi|28211027|ref|NP_781971.1| RRF2 family protein [Clostridium tetani E88]
 gi|28203466|gb|AAO35908.1| RRF2 family protein [Clostridium tetani E88]
          Length = 148

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ ++   +++   +   + I+E   ISE +L +IL  L K G++ + +G
Sbjct: 4   MQISTKGRYGLKAMVNIGVYSSLESVTKKSISEMEDISEKYLEQILSVLKKNGLINSKKG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
            +GG  L R  ++IT+ D+++  E    V      +  D  ++  C    + + L K +N
Sbjct: 64  PQGGYTLARNDNEITVGDILRTLEGELEVVNLEEYN--DSNIMELCLKRNVWNKLNKEIN 121

Query: 117 AFFDVLTQYSIECLVR 132
              D +T   +E LV+
Sbjct: 122 TLVDSIT---LEELVQ 134


>gi|326790786|ref|YP_004308607.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium lentocellum DSM 5427]
 gi|326541550|gb|ADZ83409.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           lentocellum DSM 5427]
          Length = 151

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L+  A+H+  D    IS IA+   +S  ++ ++   L KAGIV++++
Sbjct: 1   MKISTKARYGLRALVDLAVHSSGDQVPLIS-IAQRQELSANYMEQVFSSLKKAGIVKSIK 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKA 114
           G +GG  L + +  IT+ +V++A E    + E   +   D  L+      C    V  K 
Sbjct: 60  GSQGGYILAKRSCDITVGEVIRAIEGEILIVEEEEARD-DASLIYNSMKQCLQEQVWSKI 118

Query: 115 LNAFFDVLTQYSIECLVRN 133
             +   V+   ++E L+++
Sbjct: 119 TESICQVIDHITLEDLMKD 137


>gi|253990072|ref|YP_003041428.1| hypothetical protein PAU_02593 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781522|emb|CAQ84685.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 155

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H+    R   IA +   +   + ++L  L  AG+  +  G+
Sbjct: 1   MPTSTRFAVAIHILTDIALHHGQAVRSEDIARSVNTNPTVVRRLLGALADAGLTYSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFV--------AECFASHKI 97
            GG  L RP +QI++LD+ +A E+  +          +C+  H I
Sbjct: 61  GGGALLARPPEQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNI 105


>gi|120434688|ref|YP_860375.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117576838|emb|CAL65307.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 137

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L Y A   D  P + S+I+E+  IS+ FL  IL  L K+G + + +G+ 
Sbjct: 2   LSKKTKYGIKALAYIARKKDRKPVQASEISESENISQKFLESILLELRKSGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  V++  E    +  C + +      DCP   +C +  ++ +  +A
Sbjct: 62  GGYYLIKEPAEIKMTAVIRVLEGPIAMVPCVSLNYYEKCNDCPDEKTCSVHKLMIQLRDA 121

Query: 118 FFDVLTQYSIE 128
             +VL + ++E
Sbjct: 122 SLNVLGENTLE 132


>gi|171463236|ref|YP_001797349.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192774|gb|ACB43735.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 189

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+   + P  ++ I++   IS  +L ++   L +  IVE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREAHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNA 117
             GG  L RP+ ++++ D++ A +ES    +C        D    G C +T  L   LN+
Sbjct: 61  PGGGYTLARPSSEVSVADIIVAVDESLDATQCGGKGNCHTDEENHGRC-MTHDLWSNLNS 119

Query: 118 -FFDVLTQYSIECLVRNR 134
              + L+  S++ LV+ +
Sbjct: 120 KMVEYLSSVSLKDLVQQQ 137


>gi|30261095|ref|NP_843472.1| hypothetical protein BA_0967 [Bacillus anthracis str. Ames]
 gi|47526250|ref|YP_017599.1| hypothetical protein GBAA_0967 [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49183932|ref|YP_027184.1| hypothetical protein BAS0909 [Bacillus anthracis str. Sterne]
 gi|165871693|ref|ZP_02216338.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635503|ref|ZP_02393816.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638963|ref|ZP_02397237.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687574|ref|ZP_02878790.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170707938|ref|ZP_02898387.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653587|ref|ZP_02935761.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190566555|ref|ZP_03019472.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227816175|ref|YP_002816184.1| hypothetical protein BAMEG_3602 [Bacillus anthracis str. CDC 684]
 gi|229601398|ref|YP_002865526.1| hypothetical protein BAA_1065 [Bacillus anthracis str. A0248]
 gi|254682847|ref|ZP_05146708.1| hypothetical protein BantC_03205 [Bacillus anthracis str.
          CNEVA-9066]
 gi|254725633|ref|ZP_05187415.1| hypothetical protein BantA1_24776 [Bacillus anthracis str. A1055]
 gi|254734259|ref|ZP_05191972.1| hypothetical protein BantWNA_03713 [Bacillus anthracis str.
          Western North America USA6153]
 gi|254740092|ref|ZP_05197784.1| hypothetical protein BantKB_03564 [Bacillus anthracis str. Kruger
          B]
 gi|254753432|ref|ZP_05205468.1| hypothetical protein BantV_13223 [Bacillus anthracis str. Vollum]
 gi|254758530|ref|ZP_05210557.1| hypothetical protein BantA9_09484 [Bacillus anthracis str.
          Australia 94]
 gi|30254709|gb|AAP24958.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47501398|gb|AAT30074.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49177859|gb|AAT53235.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164712594|gb|EDR18126.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513093|gb|EDR88465.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167529121|gb|EDR91875.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170127098|gb|EDS95976.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668387|gb|EDT19134.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172081391|gb|EDT66465.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190562107|gb|EDV16075.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227003551|gb|ACP13294.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229265806|gb|ACQ47443.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 168

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
          M  +   +Y +  L+Y     + P++    I  +AE   +SE FL K+   L K GIV +
Sbjct: 1  MQYSVGVEYALHCLVYLI---NTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          V G +GG RL +  + I+  DV++A E    + +C
Sbjct: 58 VPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|87307172|ref|ZP_01089317.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
           3645]
 gi|87289912|gb|EAQ81801.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
           3645]
          Length = 153

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++  +Y +R + + A          +IA    +   +L K+LQ L KAG+V + RG  GG
Sbjct: 3   SQTVEYALRAVCHLAFIAPNSCTTEEIATGTKVPLAYLSKVLQGLAKAGVVRSQRGIGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAEC---FASHKID-CPL 101
           + L +  D++TIL+VV A +    +  C    ++H +  CPL
Sbjct: 63  MSLIKRPDELTILEVVNAVDPIQRIRTCPLGLSTHGVKLCPL 104


>gi|326794498|ref|YP_004312318.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Marinomonas mediterranea MMB-1]
 gi|326545262|gb|ADZ90482.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas
           mediterranea MMB-1]
          Length = 166

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  +S I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDKGPVSLSDISARQGISLSYLEQLFAKLRKQSLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I +  +V A  ES     C    + DC    +C    +     +   
Sbjct: 61  PGGGYLLSRERSDIFVAQIVDAVNESVDATGCRG--RSDCQGGTTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNR 134
           D L+  S+E LV+ +
Sbjct: 119 DFLSGISLEKLVQRK 133


>gi|319943706|ref|ZP_08017987.1| iron-sulfur cluster assembly transcription regulator IscR
           [Lautropia mirabilis ATCC 51599]
 gi|319742939|gb|EFV95345.1| iron-sulfur cluster assembly transcription regulator IscR
           [Lautropia mirabilis ATCC 51599]
          Length = 172

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT +  + +  ++  A+  HN  P  ++ I++   IS  +L ++   L +  +VE+ R
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHNG-PVTLAGISQRQKISLSYLEQLFGKLRRHQLVESTR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           G  GG  L RP+  I +  ++ A +E     +C    K DC   G C +T  L  +LN  
Sbjct: 60  GPGGGYSLARPSQDINVSSIIFAVDEPLDATQCGG--KQDCFEDGPC-MTHELWTSLNKR 116

Query: 118 FFDVLTQYSIECLVRNR 134
             D L   S++ LV  +
Sbjct: 117 MIDYLDSVSLQDLVEQQ 133


>gi|229918428|ref|YP_002887074.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
          AT1b]
 gi|229469857|gb|ACQ71629.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
          AT1b]
          Length = 135

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A   D  P  + +IA    + E +L +++ PL   G+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIALARETDNKPLSLKKIAARHELPEHYLEQLIGPLRNGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
            GG +L +P +++T  ++++  E    + E
Sbjct: 61 AYGGYQLVKPPEEVTAGEIIRLLEGPLAIVE 91


>gi|118476599|ref|YP_893750.1| BadM/Rrf2 family transcriptional regulator [Bacillus
          thuringiensis str. Al Hakam]
 gi|118415824|gb|ABK84243.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
          thuringiensis str. Al Hakam]
          Length = 170

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L K GIV +V G +GG 
Sbjct: 8  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 67

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 68 RLAKSPEDISFWDVIEAVEGPKPIFQC 94


>gi|13471616|ref|NP_103182.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022358|dbj|BAB48968.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 174

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + +AE   +S  +L K L  L  A I+E+V G  GG RL R A++IT+LD+V A E    
Sbjct: 29  AALAECFGLSASYLLKHLNMLTAASILESVPGPAGGYRLARAAERITLLDIVLAIEGREP 88

Query: 88  VAECF-----ASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
              C         KID    V  CG+ + + KA  A+   L +  +  +V +
Sbjct: 89  AFRCGEIRRNGPVKIDASAYVKPCGINAAMLKAERAYRAALAEVKLSDIVAD 140


>gi|218291270|ref|ZP_03495246.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238818|gb|EED06030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 125

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
            +D P  +  IAE   +SE +L +++ PL   G V ++RG  GG  L R   +I I DV+
Sbjct: 10  QSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRGAYGGYVLARHPREIVIEDVL 69

Query: 80  KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
            A E    + +     +ID       GL  +  +   A  DVL+  +++ LV  R 
Sbjct: 70  LALEGPITIVD----EEID------DGLQVLWDRLREAIHDVLSSMTLQDLVELRQ 115


>gi|196037505|ref|ZP_03104816.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196044146|ref|ZP_03111382.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225862920|ref|YP_002748298.1| hypothetical protein BCA_1009 [Bacillus cereus 03BB102]
 gi|229183282|ref|ZP_04310512.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|196024785|gb|EDX63456.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196031747|gb|EDX70343.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|225789674|gb|ACO29891.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|228600421|gb|EEK58011.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
          Length = 168

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L K GIV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|65318375|ref|ZP_00391334.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
          str. A2012]
          Length = 168

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L K GIV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|114764573|ref|ZP_01443777.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114542949|gb|EAU45969.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. HTCC2601]
          Length = 153

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 11/118 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  D     +  I++   +S  +L ++   L +AG+VE+VRG
Sbjct: 1   MKLSTKGRYAMVALTDIAMQPDGVLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR-KALN 116
             GG RL RPA +I ++D++ A +E+       A HK      G+ G TS  R ++LN
Sbjct: 61  PGGGYRLARPASEIRVVDILGAVDET-----VDAMHKG----AGASGATSGSRAQSLN 109


>gi|291534433|emb|CBL07545.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
           M50/1]
 gi|291541272|emb|CBL14383.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
           XB6B4]
          Length = 143

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++N   P  +  IA    IS+ +L +I+  L KA  V+++RG
Sbjct: 1   MRISTKGRYALRLMLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116
            +GG  L +  ++ T+  +++ TE S     C       C  +  C    V +K   A+N
Sbjct: 61  AQGGYILTKRPEEYTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAIN 119

Query: 117 AFFDVLT 123
              D +T
Sbjct: 120 QVVDSIT 126


>gi|119469041|ref|ZP_01612025.1| transcriptional repressor of the iscRSUA operon, involved in
          assembly of Fe-S clusters [Alteromonadales bacterium
          TW-7]
 gi|119447293|gb|EAW28561.1| transcriptional repressor of the iscRSUA operon, involved in
          assembly of Fe-S clusters [Alteromonadales bacterium
          TW-7]
          Length = 163

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
            GG  L R A  I++ D++ A +ES     C  ++
Sbjct: 61 PGGGYLLGREAGVISVGDIITAVDESVDATRCQGAN 96


>gi|260463874|ref|ZP_05812071.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259030471|gb|EEW31750.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 149

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++   +       ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSGLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCD-EATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|251798334|ref|YP_003013065.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Paenibacillus sp. JDR-2]
 gi|247545960|gb|ACT02979.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
          JDR-2]
          Length = 139

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +  + IT  DV++  E
Sbjct: 61 AYGGYILSKEPETITAGDVIRILE 84


>gi|296447784|ref|ZP_06889698.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254703|gb|EFH01816.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 144

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  YG++ L++ A   +       IA+   I   FL  IL  L  AGI+ + +G+ G
Sbjct: 2   LSNKAKYGLKALIHLA-GAEGQCLAGDIAKENNIPRKFLDAILVELRNAGIINSKKGKHG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118
           G  L RPA+++T+  +++  +       C +        DCP   +C +  ++     + 
Sbjct: 61  GYLLARPAEKVTVGQIIRILDGPLAPIACASKTAYQRCADCPDEDACAIHDIMLDVRESI 120

Query: 119 FDVLTQYSIECLVRNRSS 136
             +L + SI  L R R S
Sbjct: 121 ALILDRTSIASL-RERGS 137


>gi|149179559|ref|ZP_01858095.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
 gi|148841602|gb|EDL56029.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
          Length = 141

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R +   A     P     +AE   +   +L ++LQ L  +GIV +  G +G
Sbjct: 2   LSKTHEYALRAVACLAGQPGKPASADFLAERTKVPRRYLTRVLQDLAASGIVSSKSGPKG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101
           G  L   + ++TILD+V A      +  C     SH   CPL
Sbjct: 62  GYELIAESGELTILDIVNAIAPLERIKACPLGLKSHTSLCPL 103


>gi|320533390|ref|ZP_08034080.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134407|gb|EFW26665.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 165

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K  ++    L+   +        + +A    +S  +L K LQ L  AGIV +V G 
Sbjct: 1   MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG RL +PA ++++ DVV A   +  + +C        F   K      G C +   + 
Sbjct: 61  SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFIDQKSQILASGLCSINRAMS 120

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A +A+   L   SI  L 
Sbjct: 121 RAEDAWRASLAGTSIADLA 139


>gi|118594588|ref|ZP_01551935.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
           HTCC2181]
 gi|118440366|gb|EAV46993.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
           HTCC2181]
          Length = 157

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H  D P  ++ I+    IS  +L ++   + + G+V++VRG
Sbjct: 1   MKLTTKGRFAVTAMLDLAMHETDSPVTLTAISARQSISLSYLEQLFSQMRRKGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG    +    IT+ ++V A +E     +C  S   +C   G C +T  L  +LN   
Sbjct: 61  PGGGYLSAQNHKDITVKNIVTAVDEKLDSTQCGGSE--NCHEGGRC-ITHDLWVSLNTKV 117

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D L   S++ L+  +    K
Sbjct: 118 LDYLDGLSLQDLIDGQKDRNK 138


>gi|254518634|ref|ZP_05130690.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912383|gb|EEH97584.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 143

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  AI+ D  N  I  I+E   ISE +L +I   L K GI+   +G
Sbjct: 1  MKISTKGRYGLRALIDLAINIDSENVSIKTISERQNISERYLEQIFSLLRKGGIIVGRKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFV 88
           +GG  L +   ++TI +++K  E E+ F+
Sbjct: 61 AQGGYILGKNPSELTISEILKVLEGENIFI 90


>gi|124514277|gb|EAY55791.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
          Length = 141

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R +Y +R L+  A+  D     +QIA    I + FL +IL  LVK GIVE+ RG R
Sbjct: 4   RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63

Query: 62  GGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           G   L +  ++I++  ++   E    FF         I         L S +R  L    
Sbjct: 64  GKYCLGQRPEEISLYRLLAMVEGEIVFFDPATPPGPAIQT-------LYSDIRDGLVGVL 116

Query: 120 DVLTQYS-IECLVRNRSSIKKIF 141
           D  T  + +E   ++R+  + +F
Sbjct: 117 DRFTLDAFVEAAGKDRNETRPMF 139


>gi|78063784|ref|YP_373692.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77971669|gb|ABB13048.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 173

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 8   DYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YG+  L+Y A  +       +  +AE   +S  +  K+   L KAGIV +  G RGG  
Sbjct: 9   EYGLHCLLYLADTSTGVRDASVRDLAEMQGVSVDYAAKLFTRLAKAGIVVSSEGIRGGFA 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPA  I++ DVV+A +    + +C         F          G+C + +V++ A  
Sbjct: 69  LARPARDISVQDVVEAIDGDKRLFDCREVRGQCAVFEGEPPAWATRGTCSIHAVMQAAER 128

Query: 117 AFFDVLTQYSIECLV 131
           A  + L + S+  L 
Sbjct: 129 AMREELKKQSLADLA 143


>gi|86157269|ref|YP_464054.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773780|gb|ABC80617.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 157

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY I +L   A   +       +A+   +    + K+ + L KAG+V + RGR
Sbjct: 2   IRLSKLTDYAIVILANLARAGEGTLTAQDLADRSKVPLPTVSKLCKELSKAGLVLSHRGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L R AD I+I ++V+A E    +  C    +    C L  +C   +       A 
Sbjct: 62  HGGYGLARSADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAI 121

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
              L    +  +V   S+  K  +A
Sbjct: 122 QGALRGLPLSSIVLQHSNDPKDPDA 146


>gi|332532350|ref|ZP_08408230.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|332038217|gb|EGI74663.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 163

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1  MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  I++ D++ A +ES     C
Sbjct: 61 PGGGYLLGREAGVISVGDIISAVDESVDATRC 92


>gi|312196443|ref|YP_004016504.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227779|gb|ADP80634.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
          Length = 159

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 6  RTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R   G+   ++C +       P   +++AE   +S  +L K LQ L +A +V++V+G+ G
Sbjct: 2  RLSGGVETALHCCVVLTAAAEPVPAARLAELHGVSATYLAKQLQALSRARLVQSVQGKAG 61

Query: 63 GVRLCRPADQITILDVVKATE 83
          G  L RP ++I +LDVV+A +
Sbjct: 62 GYVLTRPPEEIKVLDVVEAVD 82


>gi|323341640|ref|ZP_08081873.1| iron-sulfur cluster assembly transcription regulator IscR
          [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464065|gb|EFY09258.1| iron-sulfur cluster assembly transcription regulator IscR
          [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 141

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ RT YGI  + Y  I++     +  IAE   IS+++L ++   L +A +V+ V+G 
Sbjct: 1  MKLSARTRYGIAAMTYMHINDQELTTLVNIAEHLNISKIYLEQVFSSLKQANLVDAVKGP 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
           GG  L   + +  + +++ A E S F
Sbjct: 61 AGGYYL--KSKECNMFNILNALEPSLF 85


>gi|94263797|ref|ZP_01287603.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
 gi|93455808|gb|EAT05975.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
          Length = 131

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R L Y     +    + +IA    I   FL KI + L  AG+V   RG 
Sbjct: 1   MQITRETDYALRCLYYLVRRPEQVCMVDEIAAEMEIPRSFLAKIARKLAAAGLVVAHRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNA 117
            GG  L R  + I+I +V+ A E    +  C    K  C     C L  V   LR+ + A
Sbjct: 61  GGGFMLIRKPETISIHEVICAIEGEVALNICTGEEK-RCQRSDHCPLHPVWVNLRRDVEA 119

Query: 118 FFD 120
              
Sbjct: 120 LLQ 122


>gi|254303065|ref|ZP_04970423.1| possible transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148323257|gb|EDK88507.1| possible transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 142

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L    +Y  R+L Y ++ +   NRI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1  MKLKNEIEYVFRILNYLSLQDR--NRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE 90
          +G  GG +L +    IT+ D V+  E+   + +
Sbjct: 59 KGANGGYKLNKEPKDITLRDAVETIEDEIIIKD 91


>gi|288555374|ref|YP_003427309.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
 gi|288546534|gb|ADC50417.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
          Length = 139

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1  MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L + A++IT  D+++  E
Sbjct: 61 AYGGYMLAKDANEITAGDIIRVLE 84


>gi|182679703|ref|YP_001833849.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
          subsp. indica ATCC 9039]
 gi|182635586|gb|ACB96360.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
          subsp. indica ATCC 9039]
          Length = 162

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          CAI    P         +AE   + + +L K LQ L +AG+V T+ G  GG RL RP  +
Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLGPSGGYRLARPPTE 73

Query: 73 ITILDVVKATE 83
          +T LD+V+A E
Sbjct: 74 LTFLDIVEAVE 84


>gi|304440166|ref|ZP_07400057.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304371429|gb|EFM25044.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 141

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+  DY  R+  Y A         ++I+E   I E F  +IL+ L  AGI +  RG 
Sbjct: 1  MRITQEVDYAFRICSYLASKKGEVVAATEISETQAIPERFTLRILRKLNLAGITDAKRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           GG  L R    + + ++++A +    +  C  S    C
Sbjct: 61 YGGYYLVRDKYDLNLYEIIEAIDGPIQINRCLRSEDAYC 99


>gi|160872032|ref|ZP_02062164.1| FeS assembly SUF system regulator [Rickettsiella grylli]
 gi|159120831|gb|EDP46169.1| FeS assembly SUF system regulator [Rickettsiella grylli]
          Length = 157

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K TDY + ++ Y + H        +IAE   I+     K+L+ L   G++   RG 
Sbjct: 2   LRLSKLTDYAVVIMAYLSQHPGLAINAKKIAERTGIALPTTSKLLKHLTHRGLLHANRGI 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
           RGG  L  PA  I++  +++  E    + EC  SH+   C     C +    R+ ++AF 
Sbjct: 62  RGGYLLAYPAADISLGTLIQTLEGPIALTEC--SHRTRTCRFAQQCTIRDNWRR-ISAFI 118

Query: 120 DV 121
            +
Sbjct: 119 QM 120


>gi|297584735|ref|YP_003700515.1| BadM/Rrf2 family transcriptional regulator [Bacillus
          selenitireducens MLS10]
 gi|297143192|gb|ADH99949.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
          selenitireducens MLS10]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IA    +SE +L +++ PL  A +V++VRG
Sbjct: 1  MKISTKGRYGLTIMMALARKYGEGPVSLKSIAHEHALSEHYLEQLIAPLRNAALVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +  + IT  DV++  E
Sbjct: 61 AYGGYMLAKEPESITAGDVIRVLE 84


>gi|166366256|ref|YP_001658529.1| putative HTH-type transcriptional regulator [Microcystis
          aeruginosa NIES-843]
 gi|166088629|dbj|BAG03337.1| putative HTH-type transcriptional regulator [Microcystis
          aeruginosa NIES-843]
          Length = 147

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  + +AG+V + RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
           +GG +L RPA++I++  +++A  E+
Sbjct: 61 AQGGYQLARPANRISLGQILEAVGET 86


>gi|328883585|emb|CCA56824.1| Predicted transcriptional regulator of 4-carboxymuconolactone
          decarboxylase, Rrf2 family [Streptomyces venezuelae
          ATCC 10712]
          Length = 157

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +L K LQ L +AGIV +V G +GG RL R  D+IT++DVV A E
Sbjct: 39 YLNKQLQALARAGIVTSVSGPKGGFRLARALDRITLMDVVAAIE 82


>gi|83593363|ref|YP_427115.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576277|gb|ABC22828.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 154

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A H+   P  ++ IA+   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
             GG  L R A  + I D++ A +E      C       C    G C    +  +  N  
Sbjct: 61  PGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCMTHDLWEELANQI 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L+  S+E + + R
Sbjct: 121 YLYLSSVSLEDVTQRR 136


>gi|312115350|ref|YP_004012946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220479|gb|ADP71847.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 152

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 10/145 (6%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ + + A +      ++S+IAEA  I + FL +I   L KAG V + +G+ 
Sbjct: 2   LTAKGKYGLKAMTHLARLAPGEIAQVSEIAEANSIPKKFLDQIFSELRKAGFVFSKKGKA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKAL 115
           GG  L + A  I + D+V+  +       C       A    DC   G C + +++ +  
Sbjct: 62  GGYALAKEASSINVGDIVRVLDGPLAPIPCASVTAYRACDDCDC---GECEVRAIMVEVR 118

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKI 140
           NA   VL   ++      +S+ +++
Sbjct: 119 NAISVVLDNRTLAQFAGLKSTRRRV 143


>gi|302868852|ref|YP_003837489.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
          ATCC 27029]
 gi|315504679|ref|YP_004083566.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp.
          L5]
 gi|302571711|gb|ADL47913.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
          ATCC 27029]
 gi|315411298|gb|ADU09415.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp.
          L5]
          Length = 156

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 1  MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          M L+ R DY +R     A            P    QIA A  I   FL  IL  L + GI
Sbjct: 1  MRLSARVDYALRAAAELASVAVGGTTGRSRPVTAEQIARAQDIPPKFLESILLQLRRGGI 60

Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80
          V   RG  GG  L RPA +I++ +V++
Sbjct: 61 VHAQRGPEGGYWLARPAGEISLAEVIR 87


>gi|254491784|ref|ZP_05104963.1| rrf2 family protein (putative transcriptional regulator)
          [Methylophaga thiooxidans DMS010]
 gi|224463262|gb|EEF79532.1| rrf2 family protein (putative transcriptional regulator)
          [Methylophaga thiooxydans DMS010]
          Length = 135

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          ++ I+E   IS  +L ++   L K G+V + RG  GG RL R A+ IT+LDV+ A +E  
Sbjct: 15 LADISERQGISLSYLEQLFARLRKQGLVSSSRGPGGGYRLSRSAEDITVLDVISAVDEKV 74

Query: 87 FVAEC 91
             +C
Sbjct: 75 DSTQC 79


>gi|288817531|ref|YP_003431878.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
          thermophilus TK-6]
 gi|288786930|dbj|BAI68677.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
          thermophilus TK-6]
 gi|308751134|gb|ADO44617.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
          thermophilus TK-6]
          Length = 151

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          ++ +IAEA  I + FL KI   L +  ++ + +G  GG  L  P +QITI+DV++  +E 
Sbjct: 26 KVEEIAEAQKIPKPFLSKIFHKLARERVLRSYKGPTGGFALAVPPEQITIMDVIRYLDED 85

Query: 86 FFVAEC 91
          + +  C
Sbjct: 86 YKLDYC 91


>gi|290962918|ref|YP_003494100.1| hypothetical protein SCAB_86361 [Streptomyces scabiei 87.22]
 gi|260652444|emb|CBG75577.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 133

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA++  +    + K +  L   G++E  RGR GG+ L        + ++V+  E+    
Sbjct: 17  QIADSMNVPYTHMAKAIAQLQHLGVIEARRGRNGGLTLTDAGRAAPVGNLVRTLEQDREA 76

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
             C       CPL G+C L   LR+A  AF+  L + ++  LV
Sbjct: 77  VVC--EGDTPCPLSGACRLRRALREAQEAFYSSLDKVTVGDLV 117


>gi|23336286|ref|ZP_00121509.1| COG1959: Predicted transcriptional regulator [Bifidobacterium
          longum DJO10A]
 gi|189440615|ref|YP_001955696.1| putative transcriptional regulator [Bifidobacterium longum
          DJO10A]
 gi|189429050|gb|ACD99198.1| Putative transcriptional regulator [Bifidobacterium longum
          DJO10A]
          Length = 140

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L Y A H   P++I  +AE  C +   + K+++PL  AG++ T  G  GG  L RPA +I
Sbjct: 15 LDYRATH--LPSQI--LAENICTNAARVRKVMRPLASAGLIATKEGTEGGYALARPAAEI 70

Query: 74 TILDVVKATEESF 86
          T+  V +AT  +F
Sbjct: 71 TLRAVAEATGTTF 83


>gi|145222864|ref|YP_001133542.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315443329|ref|YP_004076208.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Mycobacterium sp. Spyr1]
 gi|145215350|gb|ABP44754.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
           PYR-GCK]
 gi|315261632|gb|ADT98373.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
           Spyr1]
          Length = 158

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATVGDGALVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L RPA  I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLG--DLPYSGPTASLTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL Q S+
Sbjct: 119 RSVLEQTSL 127


>gi|307824109|ref|ZP_07654336.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
          tundripaludum SV96]
 gi|307734893|gb|EFO05743.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
          tundripaludum SV96]
          Length = 149

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          + L+K TDY   +L + A          +I+    I+   + KIL+ LV A ++ + RG 
Sbjct: 2  LRLSKLTDYATVILSFMAREKAQVRAAMEISTVTGIALPTVSKILKLLVNADVLISTRGA 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
          +GG  L R  ++I++  V+ A E    + EC  SH+
Sbjct: 62 KGGYVLARMPEEISVAAVISALEGPIALTECSISHQ 97


>gi|295399330|ref|ZP_06809312.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312110109|ref|YP_003988425.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Geobacillus sp. Y4.1MC1]
 gi|294978796|gb|EFG54392.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215210|gb|ADP73814.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          Y4.1MC1]
          Length = 138

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L     +IT  DV++  E
Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLE 84


>gi|71907577|ref|YP_285164.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71847198|gb|AAZ46694.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
           aromatica RCB]
          Length = 167

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  +M  A+  +D P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMMDLALRGDDGPVALASISERQKISLSYLEQLFGKLRRYKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  + RP + + + D+++A +E     +C      +C     C +T  L   LN   
Sbjct: 61  PGGGYCIARPLELVRVADIIRAVDEQLDATQCGGRE--NCHDEHRC-MTHDLWTTLNVKM 117

Query: 119 FDVLTQYSIECLV 131
           FD L+  ++  LV
Sbjct: 118 FDYLSSVTLADLV 130


>gi|74317181|ref|YP_314921.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056676|gb|AAZ97116.1| Iron-sulphur cluster assembly transcription factor IscR
           [Thiobacillus denitrificans ATCC 25259]
          Length = 153

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+E   IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALRGGKNPVTLAGISERQDISLSYLEQLFSRLRRHALVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L +P   +++ D+++A +E     +C    K +C     C LT  L   LN+  
Sbjct: 61  PGGGYYLAKPLADVSVADIIRAVDEPIDATQCGG--KENCHDEHRC-LTHDLWVGLNSHI 117

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
           +D L   ++  LV  +   K+
Sbjct: 118 YDYLDNVTLASLVAKQDECKE 138


>gi|291614714|ref|YP_003524871.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
           lithotrophicus ES-1]
 gi|291584826|gb|ADE12484.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
           lithotrophicus ES-1]
          Length = 160

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMVDLAMRGGKGPVTLAGISERQKISLSYLEQLFGKLRRNNVVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L RPA++I+++D++ A +E+    +C    + +C     C LT  L   LN A 
Sbjct: 61  PGGGYCLARPANKISMVDIITAVDEALDATQC--GTRGNCADGKPC-LTHDLWFGLNEAI 117

Query: 119 FDVLTQYSIECLV 131
            + L++ +++ LV
Sbjct: 118 HEYLSKINLQQLV 130


>gi|190890245|ref|YP_001976787.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|218507620|ref|ZP_03505498.1| putative transcriptional regulator protein [Rhizobium etli Brasil
          5]
 gi|190695524|gb|ACE89609.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 166

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ L  AGI++TV G +GG RL + A++I++LD++ A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAAEEISLLDILLAVE 84


>gi|167464005|ref|ZP_02329094.1| transcriptional regulator [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 76

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +  IAE   +SE +L +++ PL  AG+V+++RG  GG  L RPA+QIT   +++  E
Sbjct: 7  LKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTGQIIRVLE 63


>gi|86356200|ref|YP_468092.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
 gi|86280302|gb|ABC89365.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
 gi|327192636|gb|EGE59577.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 166

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ L  AGI++TV G RGG +L + A++I++LD++ A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYKLAKAAEEISLLDILLAVE 84


>gi|70732916|ref|YP_262687.1| rrf2 family protein [Pseudomonas fluorescens Pf-5]
 gi|68347215|gb|AAY94821.1| rrf2 family protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
           +VKA I+++ RG  GG+ L RPA  IT+ +V  A +ES  +AE     KID P  G
Sbjct: 48  MVKANILKSWRGAHGGLTLARPASDITLREVYDAVQESSLIAE-----KIDNPFSG 98


>gi|229085778|ref|ZP_04218006.1| Transcriptional regulator [Bacillus cereus Rock3-44]
 gi|228697577|gb|EEL50334.1| Transcriptional regulator [Bacillus cereus Rock3-44]
          Length = 131

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + Q+A+   +S  +L KIL  LVKAG++E+  G  GG  + R +  I+ LDV+ A E   
Sbjct: 15  VEQLAKIQNLSPTYLSKILTKLVKAGLIESNPGVNGGYSIVRRSHNISFLDVIHAIEGQT 74

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
            +  C   H+        C + +V+  A N   D L +  I  + +   S KK
Sbjct: 75  TLFSCSLEHE-KLFRNDDCLIENVMIDAENKMKDELNKKYIIDIAKQIQSKKK 126


>gi|121605191|ref|YP_982520.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594160|gb|ABM37599.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 178

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R A +IT+ D++ + +E     +C    K +C   GS  +T  L  +LN+  
Sbjct: 61  PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGSRCMTHDLWSSLNSRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   S++ LV ++
Sbjct: 119 VEFLDSVSLQKLVDDQ 134


>gi|284050305|ref|ZP_06380515.1| transcriptional regulator, BadM/Rrf2 family protein [Arthrospira
          platensis str. Paraca]
 gi|291569875|dbj|BAI92147.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 147

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  A + +  P  +  IA    I   +L K+L  + + G+V +VRG
Sbjct: 1  MKLTTRGHYSVKALLDLAMLGSSGPVSVRAIASRQNIPAPYLEKLLIEMRRRGLVISVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           +GG +L  P  QI++  +++A  E+    E  ++H+ D 
Sbjct: 61 SQGGYKLAYPPAQISLGQILEAVGETI---EPLSNHQPDA 97


>gi|269119309|ref|YP_003307486.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sebaldella termitidis ATCC 33386]
 gi|268613187|gb|ACZ07555.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
           ATCC 33386]
          Length = 164

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH +   +Y +  L+Y A  +  P   + ++AE   ISE +L KI   L K GIV+   G
Sbjct: 1   MHYSVGVEYALHCLIYLATPSVKPVLTVKELAEFQGISETYLSKIFTKLSKNGIVKATPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
             GG +L +    +T  DVV+A E    +  C         ++G+C L
Sbjct: 61  VTGGYQLKQDPSVVTFWDVVQAVEGEKQIFRCKN-------IIGTCAL 101


>gi|317490853|ref|ZP_07949289.1| iron-sulfur cluster assembly transcription factor IscR
          [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920400|gb|EFV41723.1| iron-sulfur cluster assembly transcription factor IscR
          [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 165

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A +I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDAAEIAVGTVITAVDESVDATRC 92


>gi|56551318|ref|YP_162157.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241760972|ref|ZP_04759061.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|56542892|gb|AAV89046.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374591|gb|EER64052.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 135

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58
           M L+  TDY + VL     H      ++ +  AE   +    + K++  L  A ++ ++R
Sbjct: 1   MRLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           G  GG  L RPA++IT+ DVV+A E    ++ C     + C     CG+
Sbjct: 61  GMGGGFTLARPAEEITLADVVEAIEGPIAMSSCDNKESL-CKFSAECGM 108


>gi|34763186|ref|ZP_00144152.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237742213|ref|ZP_04572694.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
 gi|256845486|ref|ZP_05550944.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_36A2]
 gi|294785208|ref|ZP_06750496.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
 gi|27887155|gb|EAA24260.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429861|gb|EEO40073.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
 gi|256719045|gb|EEU32600.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_36A2]
 gi|294486922|gb|EFG34284.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
          Length = 141

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + +  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S++  + N   I
Sbjct: 121 AMTKILSETSLQDFINNGKRI 141


>gi|317056183|ref|YP_004104650.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315448452|gb|ADU22016.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 143

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 13/138 (9%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++T   DY +R+    C        +   I++  C++  F  KIL+ LV AG+V++ +G
Sbjct: 1   MYITLEADYAVRITAALCRAEGKLDAKT--ISDQTCVTLRFSLKILRKLVSAGLVQSFKG 58

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGS-CGLTSVL 111
            +GG  +      IT+  V++A E  +         AEC       CP   + C +T ++
Sbjct: 59  TQGGYMIAMEPKDITLRMVIEAIEGKYCFSRCLQEDAECSRGASGKCPFQDAFCDITKMV 118

Query: 112 RKALNA--FFDVLTQYSI 127
            + L++  F ++ ++Y +
Sbjct: 119 SEKLDSHNFAELNSKYEV 136


>gi|261855791|ref|YP_003263074.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261836260|gb|ACX96027.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 168

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +++ +DY I +L   A           +++   ++   + K+++ L    ++ + +GR
Sbjct: 2   LKISRMSDYAIVLLTAMAKLASEQQTARALSDQTGLTLPTVGKLVKMLAANELLCSQQGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPAD+I++ D++++ +    + ECF     DC     CGL    +   +    
Sbjct: 62  HGGYRLARPADKISLADIIESIDGPIAMTECFTVEH-DCEREADCGLKPHWKAINDGVRQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           +L + ++  L+     +   F+
Sbjct: 121 LLDRTTLAELIEPIPQVPVWFD 142


>gi|157371863|ref|YP_001479852.1| DNA-binding transcriptional regulator IscR [Serratia
          proteamaculans 568]
 gi|189044752|sp|A8GHY4|ISCR_SERP5 RecName: Full=HTH-type transcriptional regulator iscR
 gi|157323627|gb|ABV42724.1| transcriptional regulator, BadM/Rrf2 family [Serratia
          proteamaculans 568]
          Length = 164

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A +I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDASEIAVGAVITAVDESVDATRC 92


>gi|87199748|ref|YP_497005.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135429|gb|ABD26171.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 144

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A        R+  IAE   I   FL  IL  + + GIV + RGR 
Sbjct: 2   LSQKTRYTIRALQHLADTWGQGAVRLDAIAEKQNIPRKFLTVILSEMAREGIVISHRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASH----------KIDCPLVGSCGLTSVL 111
           GG  L  P   I   D+++ T  S  +  C + +          ++DC L    GL   L
Sbjct: 62  GGYELALPPVDIRYGDIIRLTRGSLALVPCASRNAHEHCNNCLPEVDCRLR---GLMLQL 118

Query: 112 RKALNAFFDVLT 123
           R    A  D +T
Sbjct: 119 RDETAAILDRIT 130


>gi|163848758|ref|YP_001636802.1| rrf2 family transcriptional regulator [Chloroflexus aurantiacus
          J-10-fl]
 gi|222526707|ref|YP_002571178.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus sp.
          Y-400-fl]
 gi|163670047|gb|ABY36413.1| transcriptional regulator, Rrf2 family [Chloroflexus aurantiacus
          J-10-fl]
 gi|222450586|gb|ACM54852.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus sp.
          Y-400-fl]
          Length = 146

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + DYG+R L   A  + + P +   IA    I   +L ++L  L +AG+VE++RG
Sbjct: 1  MRISSKGDYGLRALFDLAQRYGEGPIQSEAIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L R  + IT+L+V+   E     AE
Sbjct: 61 PQGGHLLARSPESITLLEVLTVLEGPILPAE 91


>gi|94311031|ref|YP_584241.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
          metallidurans CH34]
 gi|93354883|gb|ABF08972.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
          metallidurans CH34]
          Length = 144

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V T  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-QAEGPVPSSMIAGSVGTNPALIRRMIGALTEAGFVTTTMGS 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFV 88
           GG  L RPA QIT+L+V +ATE +  +
Sbjct: 60 TGGAMLTRPASQITLLEVFQATETTALI 87


>gi|270264746|ref|ZP_06193011.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041429|gb|EFA14528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 164

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A +I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKEASEIAVGAVITAVDESVDATRC 92


>gi|239827836|ref|YP_002950460.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Geobacillus sp. WCH70]
 gi|239808129|gb|ACS25194.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          WCH70]
          Length = 138

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L     +IT  DV++  E
Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLE 84


>gi|308070333|ref|YP_003871938.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859612|gb|ADM71400.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L      +T  D+++  E
Sbjct: 61 AYGGYILANEPAGVTAGDIIRVLE 84


>gi|256389580|ref|YP_003111144.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256355806|gb|ACU69303.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ + DY +RV++  A H   PN +    + +   +   F+  IL  L +A ++ + R
Sbjct: 1   MQISAKADYAVRVMLELAAHG--PNLVKSTVLIDHQGLPRKFVESILVELRRADLIRSHR 58

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RPA  I+I  V++A               +D PL    GL     +  NA 
Sbjct: 59  GAEGGYTLARPASAISIGQVIRA---------------VDGPLAEVRGLRPHETEYSNA- 102

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
                Q+  +  V  R++++K+ +
Sbjct: 103 ----AQHLSDVWVAARAALRKVLD 122


>gi|332188880|ref|ZP_08390586.1| transcriptional regulator family protein [Sphingomonas sp. S17]
 gi|332011089|gb|EGI53188.1| transcriptional regulator family protein [Sphingomonas sp. S17]
          Length = 145

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 13/137 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L   A H D P R   IA +   +   +  +L  L  AG+  +  G RGG  L RP+ +
Sbjct: 1   MLALLADHGDMPLRSEDIAASVNSNAAVVRALLLRLASAGLTRSQLGNRGGAMLARPSSE 60

Query: 73  ITILDVVKATEESFFVAECFASHK--------IDCPLVGSC-GLTSVLRKALNAFFDVLT 123
           I ++DV  A E+  F    FA H+        ID  +  S   + + +R+AL      LT
Sbjct: 61  IRLVDVYHAVEDRNF----FAFHRQPPEGESPIDRHITPSLEAMLTPVREALEEKLADLT 116

Query: 124 QYSIECLVRNRSSIKKI 140
              +   +R R+ + +I
Sbjct: 117 LDDVLTDIRARAGVSQI 133


>gi|317049145|ref|YP_004116793.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950762|gb|ADU70237.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 165

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + A  I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKDAGAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSVRI 117

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV N+
Sbjct: 118 SEFLNNITLAELVNNQ 133


>gi|209964918|ref|YP_002297833.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209958384|gb|ACI99020.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 156

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A  +  +P  +++IA+   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLSTKGRYAVMAMVDLAKSSKGHPVALAEIADRQEISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG  L  PA+ + I D++ A +E      C A     C
Sbjct: 61  PGGGYLLASPAEAMRISDIILAVDEPIRATRCAAHSPAGC 100


>gi|83646262|ref|YP_434697.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634305|gb|ABC30272.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 156

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H     R   IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAEAGMTRSQLGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR---KALNA 117
            GG  L RPAD IT+LDV +A EE  +     +     C +   C +TSVL    + ++A
Sbjct: 61  GGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCYI--GCNITSVLEDEFQRISA 118

Query: 118 FFDV-LTQYSIECLVR 132
             D  L Q +I  + R
Sbjct: 119 TMDASLAQTTIADVAR 134


>gi|194014249|ref|ZP_03052866.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
 gi|194013275|gb|EDW22840.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
          Length = 137

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IAE+   +   + K++  L +AG++E  RG  GG  L RPA++IT+LDV +A + S    
Sbjct: 30  IAESVNSNPAIVRKMMAMLKRAGLIEIRRGV-GGAYLKRPAEEITLLDVYRAVDVSED-E 87

Query: 90  ECFASHK--IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
           E F  H+  I CP+  +    L S L++A +A  + L Q +I+ L+
Sbjct: 88  ELFNFHQPVIACPIGQAMDTRLRSELKEAQSALENHLKQVTIQQLL 133


>gi|157693157|ref|YP_001487619.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157681915|gb|ABV63059.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  A +V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    ++IT  D+++  E      E   + +
Sbjct: 61 AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEE 97


>gi|115522626|ref|YP_779537.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
          palustris BisA53]
 gi|115516573|gb|ABJ04557.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
          palustris BisA53]
          Length = 153

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K T  G+  ++  A H D       IAE   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1  MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG        ++T+LD++   E++    E  AS K
Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTSPDPEQAASDK 96


>gi|312116284|ref|YP_004013880.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221413|gb|ADP72781.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 150

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A   D  P  I++IAEA  I + FL  IL  L   G++ + +G+ 
Sbjct: 2   LSAKCKYGLKAMVYIARRGDKGPVLIAEIAEAENIPKKFLDVILLELKVNGMLTSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKA-TEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALN 116
           GG +L R   +IT+ D+V+     +     C +        DC    +C + SV+ +  +
Sbjct: 62  GGYQLARRPGKITVADIVRVLGGPNLAPVPCVSKLNYRPCTDCRDEQTCVIRSVMLEVRD 121

Query: 117 AFFDVLTQYSIE 128
           A   VL   ++E
Sbjct: 122 AIAAVLENVTLE 133


>gi|291532974|emb|CBL06087.1| Predicted transcriptional regulator [Megamonas hypermegale
          ART12/1]
          Length = 75

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y +R+++  A+++   P RI  IAE   IS+ +L +I+  L KAG V+++RG
Sbjct: 1  MKISTKGRYALRLMLDIALNDAKTPVRIKDIAERQQISDKYLEQIVSSLNKAGFVKSLRG 60

Query: 60 RRGGVRLCR 68
           +GG RL +
Sbjct: 61 PQGGYRLTK 69


>gi|126653988|ref|ZP_01725823.1| YrzC [Bacillus sp. B14905]
 gi|169829331|ref|YP_001699489.1| putative HTH-type transcriptional regulator [Lysinibacillus
          sphaericus C3-41]
 gi|126589505|gb|EAZ83648.1| YrzC [Bacillus sp. B14905]
 gi|168993819|gb|ACA41359.1| Putative HTH-type transcriptional regulator [Lysinibacillus
          sphaericus C3-41]
          Length = 139

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L  P  +I+   V+   E
Sbjct: 61 AYGGYMLANPPSEISAAHVISVLE 84


>gi|325831666|ref|ZP_08164883.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
 gi|325486537|gb|EGC88986.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
          Length = 179

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++ +  Y +R LM C        +++  +++E   IS  +L ++ +PLV+AG++ +VRG+
Sbjct: 38  VSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGK 96

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105
            GG  L +    I   DV++A E S     C      + CP  G C
Sbjct: 97  GGGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 142


>gi|16126861|ref|NP_421425.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|221235644|ref|YP_002518081.1| Rrf2 family protein [Caulobacter crescentus NA1000]
 gi|13424201|gb|AAK24593.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|220964817|gb|ACL96173.1| Rrf2 family protein [Caulobacter crescentus NA1000]
          Length = 143

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A   D      ++AE       FL  IL  L + G+V + RG+ G
Sbjct: 2   LSQKARYALRAMIELA-RADTQVTAGELAERADAPRKFLEAILLSLSREGLVISRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L R AD I+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYVLARDADAISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120

Query: 119 FDVLTQYSI 127
             VL  YS+
Sbjct: 121 AAVLEGYSL 129


>gi|32475221|ref|NP_868215.1| a transcriptional regulator [Rhodopirellula baltica SH 1]
 gi|32445762|emb|CAD78493.1| conserved hypothetical protein-putative a transcriptional regulator
           [Rhodopirellula baltica SH 1]
          Length = 124

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P     +AE   +   +L ++LQ L  AG+V +  G  GG  LC P D +TILDVV    
Sbjct: 8   PVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGGGYELCVPTDTLTILDVVNTVA 67

Query: 84  ESFFVAEC---FASHKIDCPL 101
               + +C     SH   CPL
Sbjct: 68  PVERIRKCPLGLKSHTDLCPL 88


>gi|94313237|ref|YP_586446.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357089|gb|ABF11177.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
           metallidurans CH34]
          Length = 191

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 8   DYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +YG+  L+Y +         S   +AE   I   +L K+   L KA +V    G RGG  
Sbjct: 9   EYGLHCLLYLSRSQASVETASVRDLAELQGIPADYLAKLFTKLAKANLVVATEGIRGGFS 68

Query: 66  LCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALN 116
           L RPAD+IT+ DVV A +    + +C         F          G C + +V++ A  
Sbjct: 69  LARPADKITVHDVVVAIDGDKPLFDCLEIRDRCAVFDEAPPAWATRGVCSIHAVMQSAEK 128

Query: 117 AFFDVLTQYSI 127
           A    L Q+++
Sbjct: 129 AMRHELRQHTL 139


>gi|237740772|ref|ZP_04571253.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229422789|gb|EEO37836.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 138

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 21/139 (15%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L    +Y  R+L Y ++ +   +RI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1   MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKAL 115
           +G  GG +L +    IT+ D V+  E+   + +  C A          SC   SV+ KAL
Sbjct: 59  KGANGGYKLNKDPKDITLRDAVETIEDEIIIKDRSCVAGQ-------TSC---SVIFKAL 108

Query: 116 ----NAFFDVLTQYSIECL 130
               N F + L + + + L
Sbjct: 109 ESVENNFLNNLDKVNFKEL 127


>gi|218508224|ref|ZP_03506102.1| putative transcriptional regulator protein [Rhizobium etli Brasil
           5]
 gi|327194314|gb|EGE61175.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 148

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   +I   V  R
Sbjct: 122 TRKVLFSTTIADAVGPR 138


>gi|213693040|ref|YP_002323626.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524501|gb|ACJ53248.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320459218|dbj|BAJ69839.1| putative transcriptional regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 141

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P+ I  +AE  C +   + K+++PL  AG++ T  G  GG  L RPA +IT+  V +AT 
Sbjct: 23  PSHI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARPAAEITLRAVAEATG 80

Query: 84  ESFFVAECFASH-KIDCPLVGSCG 106
            +F  A       + DC +  S G
Sbjct: 81  TTFVEANWTPGDVQEDCLVSSSMG 104


>gi|239834406|ref|ZP_04682734.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239822469|gb|EEQ94038.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 232

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 84  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 143

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L RPA++I I ++++A + +     C
Sbjct: 144 GGFCLARPANEIAIGNIIRALDGALAPIAC 173


>gi|119961490|ref|YP_946631.1| transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119948349|gb|ABM07260.1| putative transcriptional regulator [Arthrobacter aurescens TC1]
          Length = 156

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R +M  A   +     +Q +A+A       + K +  L   G ++  RG
Sbjct: 1   MKINAFADVSLRAIMVLAAAPEGTLLTTQAVADAVGTPYNHVSKAMVRLRALGFIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL     + T+ ++++  +     AEC +  K  CPL+  CGL   + KA  AF+
Sbjct: 61  RLGGSRLNEAGRKATVGELLRHLDSRQDPAECQSPTKA-CPLINECGLRHAMNKAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L    I  L   R  I
Sbjct: 120 RELDTVVISSLPHARQMI 137


>gi|317488646|ref|ZP_07947188.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316912252|gb|EFV33819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 147

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++ +  Y +R LM C        +++  +++E   IS  +L ++ +PLV+AG++ +VRG+
Sbjct: 6   VSTKGRYALR-LMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGK 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105
            GG  L +    I   DV++A E S     C      + CP  G C
Sbjct: 65  GGGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGEC 110


>gi|163814492|ref|ZP_02205881.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
 gi|158450127|gb|EDP27122.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
          Length = 136

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ + +Y +RV+   AI++D    P  + +I +   +S+ +L  I++ L KA ++E  
Sbjct: 1   MVISSKGEYALRVMADLAINHDGRFIP--LKEIVQKEELSQKYLESIMRMLSKANLIEAA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            G  GG RL +  ++ T+ ++++ TE       C  +  I C     C
Sbjct: 59  SGHGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSTITCDRSKQC 106


>gi|320334527|ref|YP_004171238.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755816|gb|ADV67573.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 155

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+    Y  + L Y  +    P+R     +I+E   ++  +L +IL  L   G+V++ 
Sbjct: 1   MRLSTTDVYAFQALAYLGMQG--PDRWIASEEISEQTGVARPYLVRILAALAAKGVVKSK 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115
           +G  GG  L R    +++ +VV+A +       C + + +  CP    C    ++  +  
Sbjct: 59  KGIGGGYALARKPHLVSLCEVVRAIDGPVAPLSCISLNWREPCPEQDRCHARNTIYTRMR 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +A   VL  +S+  LV++R++
Sbjct: 119 DAMLTVLQDFSVADLVQDRTA 139


>gi|282898861|ref|ZP_06306848.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196388|gb|EFA71298.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 186

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++   Y P  +  IA    I   +L K+   +  AG+V ++RG
Sbjct: 40  MKLTTRGHYSVKALLDLSLQPKYGPASVKAIASRQEIPAAYLEKLFIEMRHAGLVHSLRG 99

Query: 60  RRGGVRLCRPADQITILDVVKATEES 85
             GG +L R   QI+I ++++A  E+
Sbjct: 100 SIGGYKLARHPQQISIGEILEAVGEN 125


>gi|89897247|ref|YP_520734.1| hypothetical protein DSY4501 [Desulfitobacterium hafniense Y51]
 gi|219666882|ref|YP_002457317.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89336695|dbj|BAE86290.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537142|gb|ACL18881.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 126

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  +++ A +       + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
             GG  L    ++I+  D+++A E    + +C  +   +C +
Sbjct: 61  VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPECSI 102


>gi|262068100|ref|ZP_06027712.1| transcriptional regulator family protein [Fusobacterium
          periodonticum ATCC 33693]
 gi|291378186|gb|EFE85704.1| transcriptional regulator family protein [Fusobacterium
          periodonticum ATCC 33693]
          Length = 141

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L    +Y  R+L Y ++ +   +RI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1  MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE 90
          +G  GG +L +    IT+ D V+  E+   + +
Sbjct: 59 KGANGGYKLNKDPKDITLRDAVETIEDEIIIKD 91


>gi|56963349|ref|YP_175080.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909592|dbj|BAD64119.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 139

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1  MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L + A+ IT  D+++  E
Sbjct: 61 AYGGYMLAKDAEDITAGDIIRVLE 84


>gi|19704551|ref|NP_604113.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328430|ref|ZP_06870956.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19714837|gb|AAL95412.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154504|gb|EFG95296.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 143

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + +  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCSEEGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A   +L++ S++  + N   I++
Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143


>gi|299535694|ref|ZP_07049015.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
 gi|298728894|gb|EFI69448.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
          Length = 139

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L  P  +I+   V+   E
Sbjct: 61 AYGGYMLANPPSEISAAHVISVLE 84


>gi|225374493|ref|ZP_03751714.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
           16841]
 gi|225213731|gb|EEG96085.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
           16841]
          Length = 139

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L   A+ + + + +  I E   + + F +KI+  L K G+V++VRG 
Sbjct: 1   MIITRETDYALRILR--ALSDGHRHTMKNICEEAVVPQQFAYKIIAKLAKGGVVDSVRGS 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
            GG  L     ++++  +++   +   +  C AS + +C     C     +R+ L
Sbjct: 59  GGGCLLDCDLRELSLYRLLEIMGDDDRINACMAS-EYECSWEKKCRKHCEIRRKL 112


>gi|85709850|ref|ZP_01040915.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
 gi|85688560|gb|EAQ28564.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
          Length = 144

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+   DY +  +   A H  D     +++A    +    + +++  L  AG++ +VRG
Sbjct: 1  MRLSNLADYAVITMCQAATHCGDGRVSAAELASETGLPVPTVQRLVSKLTSAGLLRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG++L RPA  IT+ D+V+A E    +  C   HK
Sbjct: 61 AGGGLQLGRPAAAITVADIVEAVEGPIALTACV-DHK 96


>gi|256372224|ref|YP_003110048.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008808|gb|ACU54375.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 273

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L++R DY +R  +Y A   ++    + +I  A  I   F  +IL  L +AGI+    G
Sbjct: 3   LSLSRRGDYAVRAALYLARQESNEAVGVREITAAMAIPPSFAGQILADLTRAGILGARPG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L      IT+L +V+A E +     C A     C     C L +  + A+ A  
Sbjct: 63  RGGGYWLQHDPKDITLLTIVEAAEGTLRAERC-ALGDGPCRWDSVCPLHTFWQGAVRAVR 121

Query: 120 DVLTQYSI 127
           D L   ++
Sbjct: 122 DQLATVTL 129


>gi|70725313|ref|YP_252227.1| hypothetical protein SH0312 [Staphylococcus haemolyticus JCSC1435]
 gi|68446037|dbj|BAE03621.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 160

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +++   +S+ +L KI++ LVK G+V +  G+ GG  L +P +QIT  DV  A E      
Sbjct: 31  LSDRLNVSDSYLKKIIKALVKEGLVNSSTGKNGGFSLNKPLNQITFYDVFLAIEGR---D 87

Query: 90  ECFASHKIDCPLVG 103
             F+S ++  P +G
Sbjct: 88  AIFSSQQLLKPFLG 101


>gi|323494810|ref|ZP_08099908.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
 gi|323310950|gb|EGA64116.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
          Length = 158

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGED 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A  I I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  
Sbjct: 61  AYSIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGE 118

Query: 130 LVRN 133
           L+++
Sbjct: 119 LMKD 122


>gi|271970217|ref|YP_003344413.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270513392|gb|ACZ91670.1| putative transcriptional regulator [Streptosporangium roseum DSM
          43021]
          Length = 157

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          +L K L+ LV+AG++    G RGG RL RPA +IT+L +V+A + +    EC
Sbjct: 41 YLTKQLKSLVRAGLLAATTGPRGGFRLARPASEITLLQIVEAVDGTSPPYEC 92


>gi|154483669|ref|ZP_02026117.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
          27560]
 gi|149735579|gb|EDM51465.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
          27560]
          Length = 147

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M+L+K++ YG+  L+  +IH+   +  +  IAE   IS  +L  I   L +AGI+++++G
Sbjct: 1  MNLSKKSRYGLTALIDLSIHSTKGHVSLISIAERNGISPQYLEHIFASLRRAGIIKSIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV 88
           +GG  L     +IT+  +++A + ++ +
Sbjct: 61 AQGGYLLGDSPSRITVASIIEALDGAYRI 89


>gi|182678359|ref|YP_001832505.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634242|gb|ACB95016.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 149

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A         ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGRPLGEATLVTDIAVANEIPKKFLDTILGELRNAGFVNSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I +  +V+  +      +C +        DC     C +  ++ +A NA
Sbjct: 62  GGYTLARPAHEIMVGHIVRVLDGPLAPIQCASKTSYRRCDDCADEKKCTVRLLMLEARNA 121

Query: 118 FFDVLTQYSI 127
              VL   S+
Sbjct: 122 IAMVLDNRSL 131


>gi|150395381|ref|YP_001325848.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150026896|gb|ABR59013.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium
          medicae WSM419]
          Length = 168

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ +  AG++E V G +GG RL R  ++IT+LD+V A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQAMSGAGLLEAVSGPKGGYRLARAPEKITLLDIVLAVE 84


>gi|291295308|ref|YP_003506706.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
           1279]
 gi|290470267|gb|ADD27686.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
           1279]
          Length = 173

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+K   Y  ++L Y       P+R+    ++++A  +   +L +IL  LV   +V + 
Sbjct: 1   MRLSKTDIYAFKILGYLGAQA--PDRLVGSEELSKATGVPHTYLARILAALVGHNLVLSK 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLR-KAL 115
           +G+ GG  L RPA++I + DV++A +       C + +    C     C   SV+  K  
Sbjct: 59  KGQGGGYALPRPAEEINLRDVIRAVDGPIAPLACVSLNWPKACVEERRCHARSVVWLKVR 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +A   +L+Q S+  L  +
Sbjct: 119 DAALQILSQVSVADLAAD 136


>gi|218662716|ref|ZP_03518646.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium
          etli IE4771]
          Length = 128

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ L  AGI++TV G RGG RL +  ++I++LD++ A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKAPEEISLLDILLAVE 84


>gi|271970444|ref|YP_003344640.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270513619|gb|ACZ91897.1| transcriptional regulator protein-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 181

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ RT Y +R     A     P    +IA +  I   FL  IL  L +AG++ + RG 
Sbjct: 1   MRISARTQYALRAATELAAAPPGPVPAEKIAVSQNIPRRFLDNILLQLRRAGLIHSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++IT+ DV+   E +   ++      +  PL     + S+LR+       
Sbjct: 61  DGGYWLARPAEEITLADVIMVVEGNPEHSQHGGYPGVAGPL---ADVWSLLREHEETLLT 117

Query: 121 VLT 123
            +T
Sbjct: 118 EIT 120


>gi|257784030|ref|YP_003179247.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum
          DSM 20469]
 gi|257472537|gb|ACV50656.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum
          DSM 20469]
          Length = 167

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 8  DYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +Y +  L+Y    N+  + R+   AE   ISE +L K    L KAGIV +  G +GG RL
Sbjct: 8  EYALHCLLYMVDLNENKSIRVRDFAEFQGISESYLSKTFTQLSKAGIVLSSPGIKGGYRL 67

Query: 67 CRPADQITILDVVKATE 83
           +    I+  D+V+A E
Sbjct: 68 AKSPQSISFWDIVEAIE 84


>gi|56421100|ref|YP_148418.1| hypothetical protein GK2565 [Geobacillus kaustophilus HTA426]
 gi|261418418|ref|YP_003252100.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Geobacillus sp. Y412MC61]
 gi|297529270|ref|YP_003670545.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Geobacillus sp. C56-T3]
 gi|319767622|ref|YP_004133123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Geobacillus sp. Y412MC52]
 gi|56380942|dbj|BAD76850.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374875|gb|ACX77618.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          Y412MC61]
 gi|297252522|gb|ADI25968.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          C56-T3]
 gi|317112488|gb|ADU94980.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          Y412MC52]
          Length = 138

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L     +IT  D+++  E
Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLE 84


>gi|15605808|ref|NP_213185.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
 gi|2982976|gb|AAC06590.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
          Length = 156

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           ++ +IA+   I   FL K++  L K G+V +V+G RGG  L +  D+ITI D+++   ++
Sbjct: 38  KVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDIIELFGDA 97

Query: 86  FFVAECF 92
           +    C 
Sbjct: 98  YKYEMCL 104


>gi|261252066|ref|ZP_05944639.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
 gi|260935457|gb|EEX91446.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
          Length = 155

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAYS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L++
Sbjct: 61  IAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELMK 118

Query: 133 N 133
           +
Sbjct: 119 D 119


>gi|271963708|ref|YP_003337904.1| hypothetical protein Sros_2178 [Streptosporangium roseum DSM
          43021]
 gi|270506883|gb|ACZ85161.1| conserved hypothetical protein [Streptosporangium roseum DSM
          43021]
          Length = 149

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R DY +R     A   + P  + ++A+   +   +L  IL  + +AG+V   RG 
Sbjct: 1  MRLSARVDYALRAAAELAAAGEGPTTVGELAKEQDMPPKYLENILLQMRRAGLVRGQRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L RPA +IT+ DV++A +
Sbjct: 61 EGGYVLARPAAEITLADVIRAVD 83


>gi|229016279|ref|ZP_04173227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229022516|ref|ZP_04179048.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228738769|gb|EEL89233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228745050|gb|EEL95104.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 168

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KA IV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|229028761|ref|ZP_04184868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|228732543|gb|EEL83418.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
          Length = 168

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KA IV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|83312129|ref|YP_422393.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82946970|dbj|BAE51834.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 157

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A H++  P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLSTKGRYAVMAMVDLASHSEGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG  L R   Q  I D++ A +E      C       C
Sbjct: 61  PGGGYLLSRIPQQTRISDIILAVDEPIQTTRCSPGSPAGC 100


>gi|228984158|ref|ZP_04144343.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228775595|gb|EEM23976.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 168

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KA IV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|330467835|ref|YP_004405578.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328810806|gb|AEB44978.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 151

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R+DY +R ++  A  +    + + +A +  I   FL  IL  L +AG++ + RG 
Sbjct: 1   MYVSARSDYAVRAMLAMAQQHPALVKAAALAASQDIPYSFLQGILLDLRRAGLLHSARGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFV-----AECFASHKIDCPLVGSCGLTSVLRKAL 115
            GG  L R  ++IT+ DV++AT           AE    H +      + GL  V +   
Sbjct: 61  DGGYALTRAPEEITVGDVLRATGGPLTTVRGAPAEVATYHGV------AVGLGEVWQSVH 114

Query: 116 NAFFDVLTQYSIECLV 131
            A   V+ + S+  L+
Sbjct: 115 RAIERVVDRSSLADLL 130


>gi|115372474|ref|ZP_01459782.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370436|gb|EAU69363.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 158

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++K TDYG+ +L   A          ++AE   +    + K+L+ L  AG++ + RG  G
Sbjct: 4   MSKMTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L RPA  I +  V+ A E    +  C   H    P   SC L SV R  +   + V+
Sbjct: 64  GYGLARPAAAIPLTQVISALEGPVAITACV-QHTDGEP---SCELESVCR--IRGHWRVI 117

Query: 123 TQYSIECLVR 132
            Q   E L R
Sbjct: 118 NQAIQEALGR 127


>gi|323486700|ref|ZP_08092021.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323692161|ref|ZP_08106404.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323400081|gb|EGA92458.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323503735|gb|EGB19554.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 145

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  A+  D   RI  I+    ISE +L +I+  L KAG V +VRG 
Sbjct: 1   MKVSTKGRYALRMMLDLALQGDEVVRIKDISLRQEISEKYLEQIVSVLKKAGYVNSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--------CPLVGSCGLTSVLR 112
           +GG  L     + T+  +++ TE S     C  + ++D         P   +  L +++ 
Sbjct: 61  QGGYCLAGKPQEYTVGMILRLTEGSMAPVACVDT-RMDGRGNTCSRAPGCTALKLWTMVD 119

Query: 113 KALNAFFDVLT 123
            A+N   D +T
Sbjct: 120 DAVNGVIDKVT 130


>gi|256026414|ref|ZP_05440248.1| hypothetical protein PrD11_00165 [Fusobacterium sp. D11]
 gi|260494511|ref|ZP_05814641.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
 gi|289764429|ref|ZP_06523807.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|260197673|gb|EEW95190.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
 gi|289715984|gb|EFD79996.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 140

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDEL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N + ++
Sbjct: 120 LDDFDKINFYDLVENNTGLE 139


>gi|15613822|ref|NP_242125.1| hypothetical protein BH1259 [Bacillus halodurans C-125]
 gi|10173875|dbj|BAB04978.1| BH1259 [Bacillus halodurans C-125]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1  MKISTKGRYGLTIMMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L + A +IT  D+++  E
Sbjct: 61 AYGGYMLAKEASEITAGDIIRVLE 84


>gi|329297589|ref|ZP_08254925.1| DNA-binding transcriptional regulator IscR [Plautia stali symbiont]
          Length = 165

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H ++ P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
             GG  L + A  I +  V+ A +ES    +C    K  C     C LT VL + L+   
Sbjct: 61  PGGGYLLGKDAGAIAVGAVITAVDESVDATKCQG--KEGCQGGERC-LTHVLWRDLSERI 117

Query: 117 AFFDVLTQYSIECLVRNR 134
           ++F  L   ++  LV N+
Sbjct: 118 SYF--LNNITLAELVNNQ 133


>gi|299822833|ref|ZP_07054719.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816362|gb|EFI83600.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 188

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P +   I+E   IS+ +L K+++ LV AG+V +  G+ GG  L + A+  T+LD+ +A E
Sbjct: 56  PLKSYTISERLGISDSYLKKVMRQLVVAGLVTSEAGKDGGFILAKKAEDFTMLDIYEAIE 115

Query: 84  --ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-------LTQYSIECLVRNR 134
             ESF  +   A+       +     + +    LN FF+        L QY    L+ N 
Sbjct: 116 GKESFIHSTNLAAKVFLYEDIIEAKESEI----LNVFFEAEELFKIRLGQYKFSQLLMNT 171

Query: 135 SSIKK 139
             I K
Sbjct: 172 EQINK 176


>gi|239616862|ref|YP_002940184.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia
          TBF 19.5.1]
 gi|239505693|gb|ACR79180.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia
          TBF 19.5.1]
          Length = 144

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M + K   Y +R+L+  +I N   N   +I+ +  +   F  KIL  L KAG+V  +RGR
Sbjct: 1  MLIQKTVRYALRILVKLSIENRALNS-KEISLSENLDHGFTLKILYYLKKAGLVRAIRGR 59

Query: 61 RGGVRLCRPADQITILDVVKA 81
          +GG  L +  + ITI  + +A
Sbjct: 60 KGGYALAKNPEDITITKIFEA 80


>gi|126734658|ref|ZP_01750404.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
 gi|126715213|gb|EBA12078.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
          Length = 125

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+  D P     IA+    +   + KI+  L +AGI  +  G +GG  L R  +QIT+LD
Sbjct: 2   AVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRAGITTSQPGAKGGTHLARSPEQITLLD 61

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           V +A +      E FA+   +CP   SC + S +   L+      TQ
Sbjct: 62  VYRAVDTQ----EIFANP--NCPPDASCPIGSRIGPVLDEIKANATQ 102


>gi|226227389|ref|YP_002761495.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090580|dbj|BAH39025.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 163

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M +T   +YG    + CA+H        P     +A    +   ++ +IL  + +AGIV 
Sbjct: 1   MRITTWAEYG----LICALHLARRGETGPVTGRDVATRERLPGDYVEQILLRMRRAGIVN 56

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLR 112
           + RG RGG  L R   +I++ DV++A+E + F   C  SH +D   C    +C +  V  
Sbjct: 57  STRGARGGYMLARKPSEISVRDVIQASELTTFDLHCV-SHPVDAGRCSESENCSIRPVWM 115

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138
                  +VL    +  L+ + S ++
Sbjct: 116 LLQQRIDEVLEGVKLSDLLADESVVR 141


>gi|310777893|ref|YP_003966226.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter
          polytropus DSM 2926]
 gi|309747216|gb|ADO81878.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter
          polytropus DSM 2926]
          Length = 165

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 8  DYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +YG+  L+Y     D+P      + +++    ISE +L K+   L K+GIV +  G +GG
Sbjct: 9  EYGLHCLLYLV---DHPEGKAISVKELSTFQGISETYLSKVFTKLKKSGIVRSTPGVKGG 65

Query: 64 VRLCRPADQITILDVVKATEESFFVAEC 91
            L R +  I+  DV++A E +  + +C
Sbjct: 66 YELARDSKDISFWDVIEAIEGNSNLFQC 93


>gi|228932374|ref|ZP_04095256.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228827310|gb|EEM73062.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 168

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KA IV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|228968749|ref|ZP_04129715.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228790927|gb|EEM38562.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 168

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 10 GIRVLMYCAIHN-DYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          G+   ++C ++  + P++    I  +AE   +SE FL K+   L KA IV +V G +GG 
Sbjct: 6  GVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGY 65

Query: 65 RLCRPADQITILDVVKATEESFFVAEC 91
          RL +  + I+  DV++A E    + +C
Sbjct: 66 RLAKSPEDISFWDVIEAVEGPKPIFQC 92


>gi|91205764|ref|YP_538119.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii RML369-C]
 gi|91069308|gb|ABE05030.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii RML369-C]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 11/131 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A +  D P  +++I+    IS  +L +I   L KA +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCGLTSVLR 112
             GG  L    ++I I +++ A  E+F +  C+       AS+ I C    S  L   L 
Sbjct: 61  PNGGYILIGKLEEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKC---NSHKLWKGLG 117

Query: 113 KALNAFFDVLT 123
           K +  +F+ ++
Sbjct: 118 KHIRDYFENIS 128


>gi|227431453|ref|ZP_03913502.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
 gi|227352819|gb|EEJ42996.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
          Length = 150

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++   +  + VL+  A+  D  P +   ++E   +SE +L K ++ LV A +++ +  
Sbjct: 1  MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLGVSESYLKKTMRKLVVANLIKAIAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFV 88
          + GG +L R  + IT+LDV +A E E  F+
Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFI 90


>gi|152990511|ref|YP_001356233.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
 gi|151422372|dbj|BAF69876.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
          Length = 138

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          ++Y   + + P +   IA+   I + FL +IL  L K+GIV+++RG +GG  L +P  +I
Sbjct: 17 VLYEHYNENKPLKTELIAKLGSIPKNFLEQILLDLKKSGIVKSIRGAKGGYILAKPPKEI 76

Query: 74 TILDVVKATE 83
           ++D++ + E
Sbjct: 77 LLIDIINSVE 86


>gi|238060186|ref|ZP_04604895.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881997|gb|EEP70825.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 170

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 1   MHLTKRTDYGIRV-------LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R                  P    QIA+A  I   FL  IL  L + GI
Sbjct: 15  MRLSARVDYALRATAELAAVADDAGAARSRPVTAEQIAKAQGIPPKFLESILLQLRRGGI 74

Query: 54  VETVRGRRGGVRLCRPADQITILDVVK 80
           V   RG  GG  L RPA +I++ +V++
Sbjct: 75  VHAQRGPEGGYWLARPAAEISLAEVIR 101


>gi|210610732|ref|ZP_03288592.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
 gi|210152296|gb|EEA83303.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
          Length = 158

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A   +     S++A    I E ++ KI + L +A I+    G 
Sbjct: 19  MQLKITTDYAIRIVYYLACRGEVITA-SELAYELKIPESYIPKITKKLKEANIITACEGI 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L +  + I++ D++ +TE +  +  C 
Sbjct: 78  KGGYSLVKKTEDISLFDIISSTEVTMKLNRCL 109


>gi|20140436|sp|O66625|Y268_AQUAE RecName: Full=Putative HTH-type transcriptional regulator aq_268
          Length = 144

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 39/67 (58%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          ++ +IA+   I   FL K++  L K G+V +V+G RGG  L +  D+ITI D+++   ++
Sbjct: 26 KVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDIIELFGDA 85

Query: 86 FFVAECF 92
          +    C 
Sbjct: 86 YKYEMCL 92


>gi|190890831|ref|YP_001977373.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190696110|gb|ACE90195.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSI 127
              VL   +I
Sbjct: 122 TRKVLFSTTI 131


>gi|73540759|ref|YP_295279.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72118172|gb|AAZ60435.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 186

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A+ +T+ D++ A +E     +C    K +C      G  +T  L   LN 
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 119 KMVEYLDSVSLKNLV 133


>gi|291545181|emb|CBL18290.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           18P13]
          Length = 165

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R++   A H D  Y N I  IA+   ISE +L +I+  L + G V + R
Sbjct: 24  MKISTKGRYALRLMYELACHADEGYLN-IRAIAQRQQISEKYLEQIIAMLSRGGCVISSR 82

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG RL +P +  T+  +++ TE       C       C     C    V     NA 
Sbjct: 83  GAQGGYRLAKPPEAYTVGMILRLTEGCLAPVPCMQEGCAPCERAECCPTQFVWEALDNAI 142

Query: 119 FDVLTQYSIECLV 131
             V+ + ++  +V
Sbjct: 143 SGVIDRITLADIV 155


>gi|225568454|ref|ZP_03777479.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
           15053]
 gi|225162682|gb|EEG75301.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
           15053]
          Length = 146

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A ++ +    ++ IA+   +S  +L ++   L KAGIV +V+G
Sbjct: 1   MKISTKGRYGLRALVDMAANSGEEAVSLTLIAKRQNLSLNYLEQVFGILRKAGIVASVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
             GG RL + A  IT+ ++++A E  F +A        D 
Sbjct: 61  AGGGYRLAKDAAGITVKEILEALEGEFSIAGTAKGETEDA 100


>gi|289706858|ref|ZP_06503199.1| Rrf2 family protein (putative transcriptional regulator)
           [Micrococcus luteus SK58]
 gi|289556408|gb|EFD49758.1| Rrf2 family protein (putative transcriptional regulator)
           [Micrococcus luteus SK58]
          Length = 152

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +RVLM  A          QIA+   +    + K +  L + G +E +RGR
Sbjct: 1   MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +        + ++V++      V +C      + CP  G C L   L +A  AF 
Sbjct: 61  HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL 120

Query: 120 DVLTQYSIECLV 131
             L    I  LV
Sbjct: 121 AELDTVRIRDLV 132


>gi|255523578|ref|ZP_05390546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          carboxidivorans P7]
 gi|296186461|ref|ZP_06854864.1| Rrf2 family protein (putative transcriptional regulator)
          [Clostridium carboxidivorans P7]
 gi|255512835|gb|EET89107.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          carboxidivorans P7]
 gi|296048908|gb|EFG88339.1| Rrf2 family protein (putative transcriptional regulator)
          [Clostridium carboxidivorans P7]
          Length = 167

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   +Y I  L+Y     +  +  I  +A    ISE +L K+   L K+GI++++ G
Sbjct: 1  MKFSVGVEYAIHCLLYMVNSEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87
           +GG  L R A+ IT  ++V+A E  E FF
Sbjct: 61 VKGGYALARNAEDITFWNIVEAVEGSEPFF 90


>gi|300772784|ref|ZP_07082654.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761087|gb|EFK57913.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R +MY A  +    +  I +IAEA    E FL KILQ L K G++ + +G 
Sbjct: 4   FSKTCEYALRAVMYIAQCSQQGEKAGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPL 101
            GG  +     +  + D+V++ + S     C     + S +  CPL
Sbjct: 64  NGGFYMDPEDTKRPLADIVRSIDGSQLFEGCAMGLDYCSKENPCPL 109


>gi|237744648|ref|ZP_04575129.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431877|gb|EEO42089.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +  
Sbjct: 60  GAKGGYILTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDEL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N + ++
Sbjct: 120 LDDFDKINFYDLVENNTGLE 139


>gi|312796716|ref|YP_004029638.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
 gi|312168491|emb|CBW75494.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
          Length = 180

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 5  MRLTTKGRFAVTAMIDLALRQEKGPVTLAAISQRQQISLSYLEQLFGKLRRHEIVESVRG 64

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R AD++T+ D++ A +E     +C
Sbjct: 65 PGGGYNLARRADEVTVADIIIAVDEPLDATQC 96


>gi|229815527|ref|ZP_04445856.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
           13280]
 gi|229808918|gb|EEP44691.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
           13280]
          Length = 163

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 16/106 (15%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + ++AE   IS  +L ++++PL+ AG++ +VRG+ GG  L +PA ++   D+++A E   
Sbjct: 49  LREVAEREGISLKYLEQLVRPLMNAGLLRSVRGKGGGYVLAKPAAEVRAGDILRAAEGER 108

Query: 87  FVAECFASHKIDCPLVGSCGLTSV---------LRKALNAFFDVLT 123
               C         L G+CG + +         L + ++A+ D +T
Sbjct: 109 STVACEG-------LDGACGRSDLCSTVKFWTGLEETIDAYVDGVT 147


>gi|332283993|ref|YP_004415904.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
 gi|330427946|gb|AEC19280.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
          Length = 171

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ IA+   IS  +L ++   L +  +V+++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQHSGPVTLAAIAQRQNISLSYLEQLFGKLRRHKLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN- 116
             GG  L R A  IT+ D++ A +E      C      +    GS G  +T  L   LN 
Sbjct: 61  PGGGYSLARLARNITVADIIFAVDEPLDATSCGGKENCNVGRNGSTGKCMTHELWSNLNR 120

Query: 117 AFFDVLTQYSIECLV 131
              D L   S++ LV
Sbjct: 121 KMVDYLDSVSLQDLV 135


>gi|159044182|ref|YP_001532976.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL
          12]
 gi|157911942|gb|ABV93375.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL
          12]
          Length = 162

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +S+IAE   IS  +L ++   L +A +VE+VRG  GG RL R  D I + DV++A +E+
Sbjct: 28 LSEIAERQSISLTYLEQLFVKLRRAKLVESVRGPGGGYRLARAPDAIRVSDVLQAVDET 86


>gi|332188678|ref|ZP_08390393.1| rrf2 family protein [Sphingomonas sp. S17]
 gi|332011295|gb|EGI53385.1| rrf2 family protein [Sphingomonas sp. S17]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 3  LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          LT+R+ Y +R +++ A       P  +++IA    +   FL  IL  L  A ++++ RG+
Sbjct: 2  LTQRSRYALRAMLFLAEMPPAGPPTSMTRIATEANVPRKFLELILADLKGAQLLDSQRGK 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA 93
           GG RL R A  I++ D+++  E    +  C +
Sbjct: 62 MGGYRLARAAHLISLGDIIRTIEGPLALVPCVS 94


>gi|327405892|ref|YP_004346730.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
           DSM 16823]
 gi|327321400|gb|AEA45892.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
           DSM 16823]
          Length = 151

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + KR+ Y I+ L   A ++ D  +  I+ IAE   I   FL  IL  L   G+V +  G 
Sbjct: 2   IPKRSKYAIQALKCLAKVYRDKKHLSIATIAEEENIPRKFLEAILLQLRNGGMVGSKMGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
            GG  L +  D+I +  +++ T     +  C    F    I+CP    CGL  V+ +   
Sbjct: 62  NGGYFLVKHPDEIVLSSIIRVTGGPIALLPCVSLNFYEECIECPHEELCGLHDVMLEVRE 121

Query: 117 AFFDVLTQYSI-ECLVRNRSSIKK 139
           A   +L++ S+ + ++R +  ++K
Sbjct: 122 ASIHILSKTSLADLILREKKLMRK 145


>gi|238921054|ref|YP_002934569.1| iron-sulfur cluster assembly transcription factor IscR,
           [Edwardsiella ictaluri 93-146]
 gi|259493874|sp|C5BEU6|ISCR_EDWI9 RecName: Full=HTH-type transcriptional regulator iscR
 gi|238870623|gb|ACR70334.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Edwardsiella ictaluri 93-146]
          Length = 165

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +I I  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKETSEIAIGAVITAVDESVDATRCQG--KEGCQGGTRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+  LV N+
Sbjct: 119 GFLNNISLAELVNNQ 133


>gi|241203623|ref|YP_002974719.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857513|gb|ACS55180.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   G+V + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPLAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   +  + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140


>gi|166033539|ref|ZP_02236368.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
           27755]
 gi|166026724|gb|EDR45481.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
           27755]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A HN     R+  I++   I+  ++ +I+  L K+G V++ RG
Sbjct: 1   MKVSTKGRYALRIMIDLAEHNTGGYIRLKDISKRQGITLKYMEQIMPILTKSGYVKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  ++ T  ++++A E S     C       C     C       K     +
Sbjct: 61  NNGGYMLAKKPEEYTAGEILRAAEGSLAPVSCIEDEPNACGHYEQCRTV----KFWEGLW 116

Query: 120 DVLTQYS 126
           DV+ +Y+
Sbjct: 117 DVIIEYT 123


>gi|209547809|ref|YP_002279726.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533565|gb|ACI53500.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 166

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +AE   +S  +L K LQ L  AGI++TV G RGG RL +  ++I++LD++ A E
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPRGGYRLAKAPEEISLLDILLAVE 84


>gi|84387613|ref|ZP_00990630.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
 gi|84377458|gb|EAP94324.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
          Length = 160

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I +  V+ A +ES    +C    + DC     C LT  L + L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102


>gi|220928362|ref|YP_002505271.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Clostridium cellulolyticum H10]
 gi|219998690|gb|ACL75291.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulolyticum H10]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +  YGI  ++  A    + D+   IS I+E   IS+++L ++   L ++ +V +V
Sbjct: 1  MRISSKGRYGIAAMICVAQLGRNGDFVTVIS-ISEKLGISKIYLEQVFSLLKRSKLVNSV 59

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87
          +G +GG  L + +++IT  D+++A E S F
Sbjct: 60 KGSQGGYHLAKSSERITAYDILQAVELSLF 89


>gi|223932766|ref|ZP_03624764.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|330832047|ref|YP_004400872.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3]
 gi|223898599|gb|EEF64962.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|329306270|gb|AEB80686.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           ST3]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +   + S  IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG RL +  DQIT+L V +A E      + FA H+   P
Sbjct: 61  V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100


>gi|289208014|ref|YP_003460080.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288943645|gb|ADC71344.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 164

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++++A    +S  +L ++   L + G+V + RG
Sbjct: 1   MKLTTKGRYAVTAMLDVAMHTENSPVSLAEVARRQKLSLSYLEQLFSRLRRQGLVNSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  + I++ D++ A +E   V  C    K +C     C    +        +
Sbjct: 61  PGGGYALSREPEGISVADIIVAVDEPVDVTRCGG--KANCNSESRCLTHDLWTDLSQQLY 118

Query: 120 DVLTQYSI-ECLVRNRSSIKK 139
           D L+  ++ + L R+++ + +
Sbjct: 119 DFLSSRTLADVLERHQAQMAQ 139


>gi|224543708|ref|ZP_03684247.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523361|gb|EEF92466.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
           15897]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H+      + +IA    ISE +L  I++ L K   VE +RG
Sbjct: 1   MMISTKGRYALRVMIDLAQHDRSKYIPLKEIAARQDISEKYLEIIIKSLSKKHFVEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL    +  ++  ++K TE +     C A     C     C    +         
Sbjct: 61  KGGGYRLTHAPEDYSVASILKVTEGTLAPVSCLADECNTCERASYCNTLPMWTGLHKVIT 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   S+  LV   S+
Sbjct: 121 DYLEGVSLSDLVPASSN 137


>gi|221639874|ref|YP_002526136.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221160655|gb|ACM01635.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
          Length = 155

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     N +  +AE      IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L R A+ I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARAAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 FFDV-LTQYSIECLVRN 133
              V L Q  +  +++N
Sbjct: 121 HVYVFLHQTRLSDIIKN 137


>gi|168705374|ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + +IL  L +AG+V T  G  GG RL +PA +IT+  V +A E      
Sbjct: 29  IAGSVNTNPVVIRRILAVLARAGLVATQEGTGGGGRLAKPAAEITLRAVYEAVEPDAL-- 86

Query: 90  ECFASHKID----CPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131
             FA H  D    CP+ G     L   LR A  A    L   S+  LV
Sbjct: 87  --FALHPRDPNPLCPVGGGIQSALEPTLRAAETALLGSLAGTSVADLV 132


>gi|113867177|ref|YP_725666.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
           [Ralstonia eutropha H16]
 gi|113525953|emb|CAJ92298.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
           [Ralstonia eutropha H16]
          Length = 184

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A+ +T+ D++ A +E     +C    K +C      G  +T  L   LN 
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 119 KMVEYLDSVSLKNLV 133


>gi|86145582|ref|ZP_01063912.1| Predicted transcriptional regulator [Vibrio sp. MED222]
 gi|85836553|gb|EAQ54679.1| Predicted transcriptional regulator [Vibrio sp. MED222]
          Length = 160

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I +  V+ A +ES    +C    + DC     C LT  L + L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102


>gi|56696277|ref|YP_166634.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56678014|gb|AAV94680.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 164

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 5  KRTDYGIRVLMYCA-IHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +R   G+   ++CA +  + P         +A    +SE +L K ++ L  AG+ E V G
Sbjct: 2  RRLGDGVEAALHCAAVLAELPEGKVLSGRDLAALHGVSESYLLKHMRALTAAGVTEAVPG 61

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
           RGG RL R   Q+++LDVV+A +
Sbjct: 62 PRGGFRLARAPRQVSLLDVVEAVD 85


>gi|23466176|ref|NP_696779.1| hypothetical protein BL1627 [Bifidobacterium longum NCC2705]
 gi|227546522|ref|ZP_03976571.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|239621519|ref|ZP_04664550.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|312133920|ref|YP_004001259.1| transcriptional regulator [Bifidobacterium longum subsp. longum
          BBMN68]
 gi|317482172|ref|ZP_07941195.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689884|ref|YP_004209618.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
          157F]
 gi|322691825|ref|YP_004221395.1| transcriptional regulator [Bifidobacterium longum subsp. longum
          JCM 1217]
 gi|23326915|gb|AAN25415.1| hypothetical protein in upf0074 [Bifidobacterium longum NCC2705]
 gi|227213071|gb|EEI80950.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|239515394|gb|EEQ55261.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|291516431|emb|CBK70047.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium
          longum subsp. longum F8]
 gi|311773214|gb|ADQ02702.1| Putative transcriptional regulator [Bifidobacterium longum subsp.
          longum BBMN68]
 gi|316916406|gb|EFV37805.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456681|dbj|BAJ67303.1| putative transcriptional regulator [Bifidobacterium longum subsp.
          longum JCM 1217]
 gi|320461220|dbj|BAJ71840.1| putative transcriptional regulator [Bifidobacterium longum subsp.
          infantis 157F]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P++I  +AE  C +   + K+++PL  AG++ T  G  GG  L RPA +IT+  V +AT 
Sbjct: 23 PSQI--LAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARPAAEITLRAVAEATG 80

Query: 84 ESF 86
           +F
Sbjct: 81 TTF 83


>gi|320159837|ref|YP_004173061.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
          UNI-1]
 gi|319993690|dbj|BAJ62461.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
          UNI-1]
          Length = 146

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++R DYG+++++  A    + P   + +AE   I   FL +I + L+++G +    G R
Sbjct: 4  VSRRIDYGVQLMIALAQTEAERPVPTAVLAEKLHIPLPFLHQIGRSLIQSGYIRATPGPR 63

Query: 62 GGVRLCRPADQITILDVVKATE 83
          GG+RL +  + I++L +++A E
Sbjct: 64 GGLRLKQSPENISLLQIIEALE 85


>gi|319935067|ref|ZP_08009510.1| iron-sulfur cluster assembly transcription factor IscR
           [Coprobacillus sp. 29_1]
 gi|319810085|gb|EFW06454.1| iron-sulfur cluster assembly transcription factor IscR
           [Coprobacillus sp. 29_1]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H+ +    + +IA+   ISE +L  I++ LV+A  V+ +RG
Sbjct: 1   MMISTKGRYALRIMLDLAEHDCEVYLPLREIAQRQNISEKYLEIIIKILVQARFVQGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116
           + GG RL R     T+  ++K TE S     C       C    L  +  +   L + ++
Sbjct: 61  KGGGYRLVRDPHTYTVGSILKLTEGSLAPVACLECSPNTCERSQLCKTLPMWQKLDQMID 120

Query: 117 AFFDVLT 123
            +F+ +T
Sbjct: 121 EYFEGIT 127


>gi|212638580|ref|YP_002315100.1| putative transcriptional regulator YrzC [Anoxybacillus flavithermus
           WK1]
 gi|212560060|gb|ACJ33115.1| Putative transcriptional regulator YrzC [Anoxybacillus flavithermus
           WK1]
          Length = 150

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++ +  YG+ +++  A  + + P  +  IA+   +SE +L +++ PL  AG+V++VRG
Sbjct: 13  LKISTKGRYGLTIMIELAKRYGEGPISLKSIAQTNNLSEHYLEQLISPLRNAGLVKSVRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
             GG  L     +IT  DV++  E    V E     +
Sbjct: 73  AYGGYILADEPSKITAGDVIRVLEGPLQVVEELEDEE 109


>gi|116619016|ref|YP_819387.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097863|gb|ABJ63014.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 150

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++   +  + VL+  A+  D  P +   ++E   +SE +L K ++ LV A +++ +  
Sbjct: 1  MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLEVSESYLKKTMRKLVVANLIKAIAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG +L R  + IT+LDV +A E
Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIE 84


>gi|54022226|ref|YP_116468.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54013734|dbj|BAD55104.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 176

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 25/108 (23%)

Query: 1   MHLTKRTDYGIRVLMYCA-------------------IHNDY----PNRI--SQIAEACC 35
           MH+T + DY +R L+  A                   +  D     P ++    IA A  
Sbjct: 1   MHITAKVDYAVRTLLEIARLTPAEITPATAGCVAEPGVRPDAGVAAPAKVKAETIAAAQQ 60

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           I    L  +L  L +A +V + RG  GG RL RPA QI++ DV++A E
Sbjct: 61  IPPKVLETVLSDLRRAELVTSRRGPDGGYRLARPAAQISVADVIRAIE 108


>gi|13473798|ref|NP_105366.1| hypothetical protein mll4516 [Mesorhizobium loti MAFF303099]
 gi|14024549|dbj|BAB51152.1| mll4516 [Mesorhizobium loti MAFF303099]
          Length = 156

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       ++ IA    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLAHLPAGQLAFVNDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG RL R A++I +  VV+  +       C +  +     DC    +C +  ++ +   A
Sbjct: 62  GGYRLARSAEEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSI 127
             +VL Q S+
Sbjct: 121 IAEVLDQRSL 130


>gi|319762538|ref|YP_004126475.1| transcriptional regulator, rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|330824556|ref|YP_004387859.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117099|gb|ADU99587.1| transcriptional regulator, Rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|329309928|gb|AEB84343.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 180

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R    +  +   A+H + +P  +  I+    IS  +L  I   L +AG+V +VRG
Sbjct: 1   MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLEDIFSALRRAGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  L RP   +++ ++V A+E+    A   A +    P
Sbjct: 61  PGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSP 101


>gi|87306783|ref|ZP_01088930.1| Transcriptional Regulator, BadM/Rrf2 family protein
          [Blastopirellula marina DSM 3645]
 gi|87290962|gb|EAQ82849.1| Transcriptional Regulator, BadM/Rrf2 family protein
          [Blastopirellula marina DSM 3645]
          Length = 142

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M+++ +T+Y    ++  A   D   P R+ ++A    I   FL +IL  L  AG+V++ R
Sbjct: 1  MNISAKTEYACVAMIELAALYDSGDPVRVRELAATHSIPAHFLTQILLQLKGAGMVQSTR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G  GG RL R   +I+I D+ +  E
Sbjct: 61 GATGGYRLARDPSEISIYDIHRVIE 85


>gi|56698540|ref|YP_168916.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680277|gb|AAV96943.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA-- 81
           P R+  +AE   + E +L K +Q L  AGIVET RG RGG  L R   +I++L +V+A  
Sbjct: 27  PARL--LAEFFDLPEPYLAKQMQKLSAAGIVETRRGPRGGYALARAPAEISLLQMVQAID 84

Query: 82  TEESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
            E   F    +  C  S   D   +  CG+   + +A  A+   L   ++  L+R
Sbjct: 85  GETRHFTCTELRRCGPSGVEDSQYLRPCGIARSMWRAEAAWRRELAGVTLADLLR 139


>gi|182414244|ref|YP_001819310.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841458|gb|ACB75710.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
           PB90-1]
          Length = 137

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 16/137 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVET 56
           M ++ + DY  RVL   A +H      ++QI     + +L   FL +IL  L   G++ +
Sbjct: 1   MKISTKVDYACRVLAELARLHGS--GELAQIEHLARVEKLPPNFLAQILSELRNGGLITS 58

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
            RG +GG  L RP DQI++ D++   + +  V E   +H+      G  G  +  V  + 
Sbjct: 59  RRGIQGGYALARPPDQISLYDIITLIDGA--VLELSGNHE------GRSGRRIRQVWLEI 110

Query: 115 LNAFFDVLTQYSIECLV 131
             +F +   +Y+++ LV
Sbjct: 111 RESFEEKTKRYTLDQLV 127


>gi|170016479|ref|YP_001727398.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803336|gb|ACA81954.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 166

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++   +  + VL+  A+  D  P +   ++    +SE +L K ++ LV AGIV+ +  
Sbjct: 1  MKMSNAVEQSLVVLVMLALQKDELPIKSYLLSNRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG +L R    IT+LDV +A E
Sbjct: 61 KEGGFKLARSIADITLLDVYEAIE 84


>gi|260598923|ref|YP_003211494.1| DNA-binding transcriptional regulator IscR [Cronobacter
          turicensis z3032]
 gi|260218100|emb|CBA32871.1| HTH-type transcriptional regulator iscR [Cronobacter turicensis
          z3032]
          Length = 162

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A QI + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDES 86


>gi|218661187|ref|ZP_03517117.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
 gi|218675215|ref|ZP_03524884.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   +I   V  R
Sbjct: 122 TRKVLFSTTIADAVGPR 138


>gi|317050737|ref|YP_004111853.1| transcriptional regulator, Rrf2 family [Desulfurispirillum
          indicum S5]
 gi|316945821|gb|ADU65297.1| transcriptional regulator, Rrf2 family [Desulfurispirillum
          indicum S5]
          Length = 147

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          K TDY +R+ +Y A   +   ++S+I +   +++  + K++Q L + G+V +  G+ GG+
Sbjct: 7  KETDYALRIAVYLANKQERV-KVSEICQKLNLTKPVVIKVIQMLKRHGLVASKTGKYGGL 65

Query: 65 RLCRPADQITILDVVKATEESFFVAECF 92
           L  P ++I++ DV+ +      +  C 
Sbjct: 66 SLAHPPEEISVYDVLVSMSADHSINTCL 93


>gi|229095595|ref|ZP_04226579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|228687839|gb|EEL41733.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 140

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
          +AE   +SE FL K+   L KAGIV +V G +GG RL +  + ++  DV++A E    + 
Sbjct: 1  MAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60

Query: 90 EC 91
          +C
Sbjct: 61 QC 62


>gi|149278443|ref|ZP_01884580.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter
          sp. BAL39]
 gi|149230813|gb|EDM36195.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter
          sp. BAL39]
          Length = 156

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T + +YG+R+L+  A        I+ I+E+  +S  ++ K+ + L  AG + +  G 
Sbjct: 1  MKITAQEEYGLRILLRIARQGKEGLSIAAISESEGLSTAYVAKLTRLLRMAGYINSTPGN 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
          +GG  L  PA +I I  V+K    + F
Sbjct: 61 KGGYSLAMPAAEININKVLKVLGGALF 87


>gi|89890072|ref|ZP_01201583.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
           BBFL7]
 gi|89518345|gb|EAS21001.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
           BBFL7]
          Length = 138

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T YGI+ L Y A + N+ P  IS IA+A  I   FL  IL  L K  I+ + +G+ 
Sbjct: 4   LSRKTKYGIKALTYLARLDNNEPVSISTIADAEQIPHKFLEAILLELRKNSILGSRKGKG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  + +  E    +  C    F     DC    +C +  ++ +  + 
Sbjct: 64  GGYYLMQSPETVRMSSIHRVLEGPIAMLPCVSLNFYEKCEDCIDEETCAVNKLMIQVRDN 123

Query: 118 FFDVLTQYSIECLVR 132
              +L   +++ L++
Sbjct: 124 TLAILENQTLKDLIK 138


>gi|305665393|ref|YP_003861680.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
 gi|88710148|gb|EAR02380.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
          Length = 143

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  + Y ++ ++Y A+++   N+I    I+E   + + +L K+LQ L +  IV + RG  
Sbjct: 3   SNSSKYALKAVLYLAVNSSESNKILAKNISEPINVPQAYLAKLLQELSRYNIVSSTRGPN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPL 101
           GG  L     + T++++V   +    +  C  S     ++  CPL
Sbjct: 63  GGFYLSGQNKKTTLIEIVNVIDGDNRLNSCLLSLQNCDNEKPCPL 107


>gi|146278399|ref|YP_001168558.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556640|gb|ABP71253.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 155

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     N +  +AE      IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L R A +I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARDAQEIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 FFDV-LTQYSIECLVRN 133
              V L Q  +  +++N
Sbjct: 121 HVYVFLHQTRLSDIIKN 137


>gi|269956765|ref|YP_003326554.1| BadM/Rrf2 family transcriptional regulator [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269305446|gb|ACZ30996.1| transcriptional regulator, BadM/Rrf2 family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 168

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T + DY +R+ +  A   D     +  ++A A  I   ++  IL  L + G+VET R
Sbjct: 1  MRITAKIDYAVRLCVELAARYDGGGYAKSDELATAQQIPANYVLGILNSLKQTGLVETRR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G  GG RL     QI + DV++A +
Sbjct: 61 GADGGARLASDPAQIAVADVIRAID 85


>gi|116250351|ref|YP_766189.1| Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115254999|emb|CAK06073.1| putative Rrf2 transcriptional regulator [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 166

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          + +AE   +S  +L K LQ L  AGI++TV G +GG RL +   +I++LD+V A E S
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPKEISLLDIVLAVEGS 86


>gi|94309969|ref|YP_583179.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
          metallidurans CH34]
 gi|93353821|gb|ABF07910.1| transcriptional regulator of iron sulfur clusterassembly
          [Cupriavidus metallidurans CH34]
          Length = 184

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQC 92


>gi|153011488|ref|YP_001372702.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
          ATCC 49188]
 gi|151563376|gb|ABS16873.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L RPA +I I ++++A + +     C
Sbjct: 62 GGFCLARPAHEIAIGNIIRALDGALAPIAC 91


>gi|291523627|emb|CBK81920.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
           GD/7]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++ +  Y +RV+ Y A++ D    P  + +IAEA  IS  +L  I + L K   +E   G
Sbjct: 4   ISSKGRYALRVMTYLAVNADREFVP--LKEIAEAESISLKYLESIARMLSKEHYIEGTSG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L R  +   + D+++ TE +     C   +   C     C    V +   N   
Sbjct: 62  RGGGYHLTRKPEAYKVGDILRLTEGTLAPVSCLKDNAEPCGRAELCCTLPVWQGLSNVIT 121

Query: 120 DVLTQYSI 127
           D L   ++
Sbjct: 122 DYLDNMTL 129


>gi|253997038|ref|YP_003049102.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
           JLW8]
 gi|253983717|gb|ACT48575.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
           JLW8]
          Length = 168

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY------PNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M LT +  + +  ++  AI+         P  ++ I+E   IS  +L ++   L + G+V
Sbjct: 1   MRLTTKGRFAVTAMLDLAINETKDALEAKPVTLAGISERQDISLSYLEQLFSRLRRQGLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
           +++RG  GG  L +   +I++ +++ A +E     +C   H+ +C   G C +T  L  A
Sbjct: 61  KSIRGPGGGYNLAKSHSEISVAEIIHAVDEQIDATQC-GGHE-NCRDEGRC-MTHDLWSA 117

Query: 115 LNA-FFDVLTQYSIECLVRNRSSIKKIF 141
           LN    + L   ++  +V ++ S +KI 
Sbjct: 118 LNTKILEYLDGITLADMVASQKSGQKIL 145


>gi|194289262|ref|YP_002005169.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193223097|emb|CAQ69102.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A+ +T+ D++ A +E     +C    K +C      G  +T  L   LN 
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGG--KGNCNGDDGSGRCMTHELWATLNQ 118

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 119 KMVEYLDSVSLKNLV 133


>gi|197334970|ref|YP_002155373.1| Rrf2 family protein [Vibrio fischeri MJ11]
 gi|197316460|gb|ACH65907.1| Rrf2 family protein [Vibrio fischeri MJ11]
          Length = 155

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A+Q
Sbjct: 1   MLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRGPGGGYRLGLKAEQ 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLT 123
           I +  V+ A +ES    +C    K  C     C LT  L + L++    F D +T
Sbjct: 61  IAVGMVISAVDESVDATKCHG--KEGCQGGTRC-LTHTLWRDLSSRISTFLDGIT 112


>gi|209548376|ref|YP_002280293.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534132|gb|ACI54067.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   +I   V  R
Sbjct: 122 TRKVLFSTTIADAVGPR 138


>gi|86356775|ref|YP_468667.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280877|gb|ABC89940.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   +I   V  R
Sbjct: 122 TRKVLFSTTIADAVGPR 138


>gi|218463759|ref|ZP_03503850.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli
           Kim 5]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRQG 140


>gi|196250088|ref|ZP_03148782.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          G11MC16]
 gi|196210272|gb|EDY05037.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
          G11MC16]
          Length = 138

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  + D P  +  IA A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L     +IT  D+++  E
Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLE 84


>gi|241202984|ref|YP_002974080.1| BadM/Rrf2 family transcriptional regulator [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240856874|gb|ACS54541.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 166

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          + +AE   +S  +L K LQ L  AGI++TV G +GG RL +   +I++LD+V A E S
Sbjct: 29 AALAEFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPKEISLLDIVLAVEGS 86


>gi|288958849|ref|YP_003449190.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
 gi|288911157|dbj|BAI72646.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
          Length = 158

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  ++   A     P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1  MRLSTKGRYAVMAMVDLAATSQGSPVALADIAERQEISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L  PAD   + D++ A +E      C
Sbjct: 61 PGGGYLLAHPADATRVSDIILAVDEPIRTTRC 92


>gi|283780983|ref|YP_003371738.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283439436|gb|ADB17878.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 175

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + GI  L+ C +    P    ++A    +S   + K+L  L +AG+V +  G+ GG  L 
Sbjct: 9   EIGIHTLL-CLLRTTQPVSSHELATYQGLSPTHVAKVLGRLQQAGVVASSPGKTGGYLLA 67

Query: 68  RPADQITILDVVKATE---------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           R A +I++ DVV A E         +  F  E  A    +      C + S +++A +A 
Sbjct: 68  RSAAEISLTDVVDAIEGPKPLFACRDIRFRCELLAGDPPEWATCSMCAVNSAMKRAESAM 127

Query: 119 FDVLTQYSIECL 130
            DVL + ++  L
Sbjct: 128 RDVLAKTTLRQL 139


>gi|229160056|ref|ZP_04288058.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|228623367|gb|EEK80191.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
          +AE   +SE FL K+   L KAGIV +V G +GG RL +  + ++  DV++A E    + 
Sbjct: 1  MAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60

Query: 90 EC 91
          +C
Sbjct: 61 QC 62


>gi|217077940|ref|YP_002335658.1| Rrf2 family protein [Thermosipho africanus TCF52B]
 gi|217037795|gb|ACJ76317.1| Rrf2 family protein [Thermosipho africanus TCF52B]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLF--KILQPLVKAGIVETVR 58
           M +T ++DY +R+L+  +I N   +  S++   C  S  + F  KIL  LV +GI+E+ R
Sbjct: 1   MAVTMKSDYALRLLLLLSIENKRMS-TSELISKCKTSIPYEFAQKILSQLVASGILESSR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKID-CPLVGSCGLTSVLRKALN 116
           G+ GG +L +    IT+ D+V + ++   +  CF    KI   P +  C +  V    + 
Sbjct: 60  GKFGGYKLVKDPKDITVYDIVTSVDDISSMITCFVPPDKISLAPEI--CSVNEVWEIVMK 117

Query: 117 AFFDVLTQYSIECL 130
            F   L   ++E L
Sbjct: 118 RFKQSLKSVTLEDL 131


>gi|149277390|ref|ZP_01883531.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
           BAL39]
 gi|149231623|gb|EDM37001.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
           BAL39]
          Length = 145

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    +  + P +I ++AE   I   FL +IL  +  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVALGKNVGNPPMQIVKLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116
           GG  L + A  I + D+++ T+    +  C AS K      +C    +CG+        N
Sbjct: 62  GGYSLNKDAADIFLADILRITDGPIAMVPC-ASLKFYRKCDECHDEVTCGIRKTFIDVRN 120

Query: 117 AFFDVLTQYSI 127
           A   VL Q SI
Sbjct: 121 ATLKVLAQTSI 131


>gi|323488201|ref|ZP_08093452.1| transcription regulator (putative) [Planococcus donghaensis
          MPA1U2]
 gi|323398205|gb|EGA91000.1| transcription regulator (putative) [Planococcus donghaensis
          MPA1U2]
          Length = 168

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LTK  +  I +++  A   +  P    +I++   +S  ++ KI + LV  GI  +V G
Sbjct: 1  MQLTKGVEQAICIIVLLATQESSAPLASDEISKRLGVSPSYMKKITRKLVVQGIAVSVSG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GGV L + A  IT+LDV++A E
Sbjct: 61 NNGGVSLAKSATDITMLDVIEAME 84


>gi|262201958|ref|YP_003273166.1| hypothetical protein Gbro_2020 [Gordonia bronchialis DSM 43247]
 gi|262085305|gb|ACY21273.1| protein of unknown function UPF0074 [Gordonia bronchialis DSM
           43247]
          Length = 177

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLM--------YCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKA 51
           M LT+ TD G+RV+M             +  P   ++ +A    +    + K++  L + 
Sbjct: 13  MQLTRFTDIGLRVVMRLVAAEAAARETASGPPTLTTKDLAAELAVPYTHVAKVVSRLSEL 72

Query: 52  GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G+V + RGR GG+ +        +  + +  E    V +C +     CPL  +C L   L
Sbjct: 73  GVVHSRRGRSGGLMITDLGRAARVGWLAETLEGPGEVVDCNSPEP--CPLRAACHLRGAL 130

Query: 112 RKALNAFFDVLTQYSIECLV 131
            +A NAFF  L +++I  LV
Sbjct: 131 AQARNAFFRSLDEHAIVDLV 150


>gi|148979595|ref|ZP_01815600.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145961680|gb|EDK26977.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 160

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAGD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I +  V+ A +ES    +C    + DC     C LT  L + L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHG--RADCQGGSRC-LTHTLWRDLSS 102


>gi|116251030|ref|YP_766868.1| Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255678|emb|CAK06759.1| putative Rrf2 family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   G+V + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   +  + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140


>gi|146320050|ref|YP_001199761.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|253751100|ref|YP_003024241.1| transcriptional regulator [Streptococcus suis SC84]
 gi|253753001|ref|YP_003026141.1| transcriptional regulator [Streptococcus suis P1/7]
 gi|145690856|gb|ABP91361.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|251815389|emb|CAZ50962.1| putative transcriptional regulator protein [Streptococcus suis
           SC84]
 gi|251819246|emb|CAR44507.1| putative transcriptional regulator protein [Streptococcus suis
           P1/7]
 gi|292557653|gb|ADE30654.1| Transcriptional regulator, Rrf2 [Streptococcus suis GZ1]
 gi|319757362|gb|ADV69304.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 139

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +   + S  IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG RL +  DQIT+L V +A E      + FA H+   P
Sbjct: 61  I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100


>gi|78189454|ref|YP_379792.1| hypothetical protein Cag_1493 [Chlorobium chlorochromatii CaD3]
 gi|78171653|gb|ABB28749.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           chlorochromatii CaD3]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LTK+ DY IR L+  A           IAEA  I   FL  +LQ L+   +V +  G  G
Sbjct: 4   LTKKADYAIRALLMLAAKEGGFMSAKAIAEAQDIPYQFLRSLLQELMHHHLVASKEGAHG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G R+    D I++  +++  +    V+EC    ++ C    SC L   + +         
Sbjct: 64  GFRIETNPDNISVKQLIEIFQGEVQVSECMFRKQV-CRNRSSCVLRHEIMRIEEVVSHEF 122

Query: 123 TQYSIECLVRN 133
            Q +I  L+R 
Sbjct: 123 GQLTIGSLLRK 133


>gi|302023274|ref|ZP_07248485.1| transcriptional regulator protein [Streptococcus suis 05HAS68]
          Length = 139

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +   + S  IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG RL +  DQIT+L V +A E      + FA H+   P
Sbjct: 61  V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNP 100


>gi|315499746|ref|YP_004088549.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315417758|gb|ADU14398.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 172

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 18/153 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A++    P  +S+I+E   IS  +L ++   L KAG+V++ RG
Sbjct: 1   MRLSTKGRYAVMAMTDLALNAQGKPISLSEISERQQISLSYLEQLFARLRKAGLVKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----------------ASHKIDCPLVG 103
             GG  L R AD + + ++V A +E      C                 A+ +I C   G
Sbjct: 61  PGGGYTLARTADALFVSEIVLAVDEPIKATRCALTSNKLGANKRLSKESAAREIGCMPGG 120

Query: 104 SCGLTSVLRKALN-AFFDVLTQYSIECLVRNRS 135
              LT  L + L  A  D L+  S+  +V  R+
Sbjct: 121 QRCLTHNLWEDLGFAIHDYLSTVSLNDVVHKRT 153


>gi|226357841|ref|YP_002787581.1| transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115]
 gi|226320084|gb|ACO48077.1| putative transcriptional regulator, Rrf2 family [Deinococcus
           deserti VCD115]
          Length = 138

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 23  YPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           YP+      +IA +  ++ + +  ++  L KAG+++T +G  G  RL RP + IT+LDV 
Sbjct: 18  YPHNARTSDEIAASVGVNPVVVRNVMSLLRKAGLLDTRQGSPGA-RLIRPPEAITLLDVY 76

Query: 80  KATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127
            A      V +        CP+ G+    LT+VL  A  A  D L   ++
Sbjct: 77  HAVNAPELVFKLHDQPHPQCPVGGNIQAALTTVLGNAQQAMEDHLATVTL 126


>gi|159897735|ref|YP_001543982.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159890774|gb|ABX03854.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 139

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +IA+   I++  + K++Q L  AG++ET  G +GGVRL R +  I +LD+  A E++
Sbjct: 33 EIADFLGIAKPSVVKVVQSLTNAGLIETREGAKGGVRLTRNSQAINLLDIFNAIEQA 89


>gi|325168404|ref|YP_004280194.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Agrobacterium sp. H13-3]
 gi|325168902|ref|YP_004280692.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Agrobacterium sp. H13-3]
 gi|325064127|gb|ADY67816.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
 gi|325064625|gb|ADY68314.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 17  CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           CAI    P+        +AE   + + +L K LQ L +AG+V T  G  GG RL R   +
Sbjct: 14  CAILAGLPDGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTTLGPSGGYRLARAPAK 73

Query: 73  ITILDVVKATEES--FFVAECFASHKIDCPL----VGSCGLTSVLRKALNAFFDVL 122
           +T LDVV+A E S   FV +   ++    P      G C +  ++ +A  A+  VL
Sbjct: 74  LTFLDVVEAVEGSGRTFVCQNIRANNPCRPKGYCESGPCAIARIMWEADEAWRTVL 129


>gi|83595124|ref|YP_428876.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83578038|gb|ABC24589.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 151

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+K+  + I  ++  A H    P +  +I     I   +L + LQ LV++G++  VRG
Sbjct: 2   IRLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHLVRSGVLTGVRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG RL R   +ITI ++V+   +   + E          L GS     V+R   N   
Sbjct: 62  PRGGYRLARERRRITIGEIVRVVRDLEAIDEAVDE------LPGSDLGRQVVRPLWNELH 115

Query: 120 DVL 122
           D L
Sbjct: 116 DEL 118


>gi|325272149|ref|ZP_08138580.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp.
          TJI-51]
 gi|171362773|dbj|BAG15850.1| probable transcriptional regulator [Pseudomonas putida]
 gi|324102712|gb|EGC00128.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp.
          TJI-51]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R  + I +  V+ A  ES     C
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92


>gi|104780228|ref|YP_606726.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas entomophila L48]
 gi|95109215|emb|CAK13912.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas entomophila L48]
          Length = 163

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R  + I +  V+ A  ES     C
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92


>gi|325962157|ref|YP_004240063.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468244|gb|ADX71929.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 149

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R LM  A   +     +Q IA++       + K +  L   G+++ VRG
Sbjct: 1   MKINAFADVSLRALMVLAAAPEGALLTTQNIADSVGTPYNHVSKAMAKLRSLGLIDVVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L       T+  V++  +     A+C A    +CPL+  C L S L +A  AF+
Sbjct: 61  RTGGSSLSHAGRYATVGQVLRQLDTRTDAADCVAPGG-NCPLINECKLRSALARAREAFY 119

Query: 120 DVLTQYSIECL 130
             L    I  L
Sbjct: 120 RELDSVVIADL 130


>gi|325104343|ref|YP_004273997.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324973191|gb|ADY52175.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+T Y ++ LM  A + +  P  I++IA+   + + FL  IL  L +  I+ +  G  
Sbjct: 2   LTKKTKYAVKALMALARNGENKPMLIAEIAKQEGLPKRFLEAILLDLKRGQILGSRMGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA +I +++V++  +    +  C    F     +C    +C +  ++ +  +A
Sbjct: 62  GGYFLVKPASEIMVVNVIRILDGPIALLPCVSLNFYQRCEECVDEVTCSIREMMGRVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
             +++   SI  LV     +    + G
Sbjct: 122 SIEIMGHTSIADLVAKEKELGGNLSEG 148


>gi|227498969|ref|ZP_03929106.1| transcriptional regulator [Acidaminococcus sp. D21]
 gi|226904418|gb|EEH90336.1| transcriptional regulator [Acidaminococcus sp. D21]
          Length = 141

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +R+++  A++   N  P  I  ++E   ISE +L +I+  L +A +V++ 
Sbjct: 1   MKISTKGRYALRLMLDLAMNGKENFVP--IRSVSERQEISEKYLEQIITALSRAKLVKSA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG +GG +L +  ++ T  ++++A E S     C       C     C   ++ ++   A
Sbjct: 59  RGAQGGYKLVKAPEEYTTGEILRAVEGSLAPVACLEPGHTVCARAKKCITLNLYKEIQEA 118

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              V+ + ++  LV  + +  K
Sbjct: 119 VDSVVDRTTLADLVAQQEAQDK 140


>gi|138896135|ref|YP_001126588.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267648|gb|ABO67843.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
          Length = 139

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  + D P  +  IA A  +SE +L +++ PL  AG+V+++RG
Sbjct: 2  MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L     +IT  D+++  E
Sbjct: 62 AYGGYVLAEHPAKITAGDILRVLE 85


>gi|300312445|ref|YP_003776537.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075230|gb|ADJ64629.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  +S I+E   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116
             GG  L R A  +++ D++ A +E     +C      H    P    C +T  L   LN
Sbjct: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARC-MTHDLWSTLN 119

Query: 117 A-FFDVLTQYSIECLVRNRSSIK 138
               + L   S++ LV  +   K
Sbjct: 120 EKMVEYLDSVSLQDLVDQQKEPK 142


>gi|119356346|ref|YP_910990.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353695|gb|ABL64566.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 164

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LTK TDY IR L++             IA    I   FL +++Q ++  G+V +  G  G
Sbjct: 4   LTKNTDYAIRALLFLGARKGSYVSAKTIAAEQEIPYQFLRRLMQDMIGHGLVVSKGGASG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L +  D I I D+++  +    V+EC    K+ C    +C L   + +         
Sbjct: 64  GFMLLKEPDGIRINDLIEIFQGKIQVSECMFRKKL-CSNRATCVLRHEIMRIEQVVHQEF 122

Query: 123 TQYSIECLVRN 133
            + +I  L+R+
Sbjct: 123 EKVTIGKLMRD 133


>gi|255020951|ref|ZP_05293007.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969742|gb|EET27248.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           caldus ATCC 51756]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 14  LMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H D     ++ I++   IS  +L ++   L + G+VE+VRG  GG RL  P  Q
Sbjct: 1   MLDLALHQDGGVVTVADISQRQQISVAYLEQLFGRLRRRGLVESVRGPGGGYRLADPTAQ 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVLT 123
           I +  +V+A  ES    +C       C   G   LT  L +AL     AF   +T
Sbjct: 61  IPLTQIVEAVNESIHTTQCGGDPVQCCKGEGQQCLTHDLWEALGQQIAAFLGGIT 115


>gi|56461141|ref|YP_156422.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
           L2TR]
 gi|56180151|gb|AAV82873.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
           loihiensis L2TR]
          Length = 159

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+   + P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLRKHGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL---- 115
             GG RL   A+ I++  V+ A +ES     C    K +C     C LT  L + L    
Sbjct: 61  PGGGYRLGCAANDISVGAVIHAVDESIDATRCQG--KANCQGGERC-LTHSLWEGLSDRI 117

Query: 116 NAFFDVLT 123
           + F D +T
Sbjct: 118 SDFLDGIT 125


>gi|150395418|ref|YP_001325885.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150026933|gb|ABR59050.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 153

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I++IA+   I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSC----GLTSVLRK 113
           GG  L RPA +I I  V++  +       C +  +++I  DC    +C     +TSV R 
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEICEDCSDPETCRVRISMTSV-RD 120

Query: 114 ALNAFFDVLT 123
           A+++  D +T
Sbjct: 121 AMSSILDSMT 130


>gi|307293474|ref|ZP_07573318.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306879625|gb|EFN10842.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 141

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2   LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHK--IDCPLVGSCGLTSVLRKALNA 117
           GG  L      I+  D+V+ T  S  +  C +  +H+   +C     C L  V+ +  + 
Sbjct: 62  GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121

Query: 118 FFDVLTQYSI 127
              VL   S+
Sbjct: 122 TAKVLDSISL 131


>gi|167031899|ref|YP_001667130.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           GB-1]
 gi|166858387|gb|ABY96794.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           GB-1]
          Length = 182

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 20  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG +L R  + I +  V+ A  ES     C
Sbjct: 80  PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 111


>gi|331092200|ref|ZP_08341030.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401972|gb|EGG81546.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 133

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  TK  DY IR+ M      ++ N +S I     +S    +KI + L KAG+++++RG 
Sbjct: 1  MLFTKECDYAIRI-MRALSSGEFIN-VSTICTMENLSSAMTYKITRKLEKAGLLKSLRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L R    I++ DV  + E    + EC 
Sbjct: 59 NGGYALNRSLKDISLYDVCTSIEPDILLLECM 90


>gi|302671823|ref|YP_003831783.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
           B316]
 gi|302396296|gb|ADL35201.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
           B316]
          Length = 131

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + ++ Y +R+L+  A   +D    +  IAE   IS+ +L  I + LVK G++    G+ 
Sbjct: 2   FSTKSRYALRILIDLAQQKSDDFIPLKDIAERQDISKKYLEIIAKDLVKGGLIRGASGKH 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           GG  L R  +  ++ +++   E +F    C   +  +CP  G C   S+ 
Sbjct: 62  GGYMLTRAPEDYSVGEIIDHMEGTFAPVVCLEENAGECPRSGVCKTISMW 111


>gi|299144222|ref|ZP_07037302.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518707|gb|EFI42446.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 132

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   ++ + + P  I+ IA+   +SE +L ++   L K  +V+++RG
Sbjct: 1   MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALN 116
             GG  L +   +I I +++ A E    ++    + K +C  V +C    +L K    L 
Sbjct: 61  AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE 120

Query: 117 AFFDVLT 123
              D +T
Sbjct: 121 EVLDSMT 127


>gi|148263560|ref|YP_001230266.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146397060|gb|ABQ25693.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 141

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  +++  D P  + +IA+   I   +L ++   L   GIV ++RG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLYATDKPVSLKEIAQREDIPLSYLEQLFFRLKNGGIVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R +  I + ++V   EE      C       C  V  C    +   L + + 
Sbjct: 61  PGGGYILARNSALIKVGEIVVTVEEPLSPVACMDEGSTGCSRVSRCVTHNIWKDLGERIR 120

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 121 GFLDAIT 127


>gi|34762328|ref|ZP_00143331.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237741835|ref|ZP_04572316.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845171|ref|ZP_05550629.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
 gi|294785526|ref|ZP_06750814.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
 gi|27887982|gb|EAA25046.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429483|gb|EEO39695.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718730|gb|EEU32285.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
 gi|294487240|gb|EFG34602.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
          Length = 140

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIIYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSTTICSTRGADCTIRHALKKIQDEL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N + ++
Sbjct: 120 LDDFDKINFYDLVENSTGLQ 139


>gi|319442413|ref|ZP_07991569.1| Rrf2 family transcriptional regulator [Corynebacterium variabile
           DSM 44702]
          Length = 159

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 1   MHLTKRTDYGIRVLMY-----CAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGI 53
           MHLTK  D G+R LM       A   D   R  + ++A         + K++  L   G+
Sbjct: 1   MHLTKFADLGLRSLMILGDTGAAGATDPSQRRTVGELAVQTAAPASHVKKVVARLTGLGV 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLR 112
           + +VRGR GGV L   A    I  +++  E    V +C    +  CPL    C L  +L 
Sbjct: 61  LASVRGRSGGVYLADGARDTDIGRLLRELEGRHEVVDC--EGEAPCPLAARDCSLRHLLA 118

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A   FF      ++  L+
Sbjct: 119 QAQENFFATFDGMTLGELI 137


>gi|309777294|ref|ZP_07672256.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914974|gb|EFP60752.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 138

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT- 82
           P + S++++   +S+ +L KI++ LVKA IV ++  + GG  L R   QIT LD+  A  
Sbjct: 23  PVKSSELSKKLDVSDSYLKKIMRQLVKANIVSSIASKTGGFVLLRSPSQITFLDLFNAIE 82

Query: 83  -EESFFVAECFASHKIDC 99
            EE F V+        D 
Sbjct: 83  GEEEFAVSTSLVDKVFDS 100


>gi|325679872|ref|ZP_08159441.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
 gi|324108310|gb|EGC02557.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
          Length = 150

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ + ++GI  L   AI+  N      S I+    IS+ +L +IL  L +AG +   +
Sbjct: 1   MKISTKVEFGIVALADIAIYSVNGETVSSSDISSRQNISQKYLEQILVALRQAGFIRGQK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSC 105
           G RGG  L RPA +I+  +++   + +       +    D  L   V SC
Sbjct: 61  GSRGGYTLARPASEISFSEILNGLDNNILADTYVSEDDTDGGLRDKVNSC 110


>gi|283778130|ref|YP_003368885.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283436583|gb|ADB15025.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 142

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +T+Y    ++  A  ++   P RI  IA+   I   FL +IL  L  AG+V++VR
Sbjct: 1   MIVSAKTEYACIAMLELAARDERSEPVRIKDIADRHGIPSRFLVQILLQLKTAGLVQSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           G  GG +L  P  +IT+  V+ A +     A   +S   D P
Sbjct: 61  GASGGYQLALPPREITLGTVMSAVDAQS--ARVVSSLTSDSP 100


>gi|241662560|ref|YP_002980920.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12D]
 gi|309781143|ref|ZP_07675880.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
           sp. 5_7_47FAA]
 gi|240864587|gb|ACS62248.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12D]
 gi|308919964|gb|EFP65624.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
           sp. 5_7_47FAA]
          Length = 197

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
             GG  L R AD +T+ D++ A +E     +C           G+CG
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99


>gi|90579379|ref|ZP_01235189.1| hypothetical transcriptional regulator [Vibrio angustum S14]
 gi|90440212|gb|EAS65393.1| hypothetical transcriptional regulator [Vibrio angustum S14]
          Length = 158

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H ++ P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           I +  V+ A +ES    +C    K DC     C LT  L   L+
Sbjct: 61  IAVGMVIAAVDESVDATKCHG--KGDCQGGARC-LTHTLWHDLS 101


>gi|260776733|ref|ZP_05885628.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607956|gb|EEX34221.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 155

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I I  V+ A +ES    +C    + DC     C LT  L + L++
Sbjct: 61  IAIGTVIAAVDESVDATKCNG--RADCQGGTRC-LTHTLWRDLSS 102


>gi|26987577|ref|NP_743002.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24982253|gb|AAN66466.1|AE016276_1 rrf2 family protein [Pseudomonas putida KT2440]
          Length = 163

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R  + I +  V+ A  ES     C
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 92


>gi|187927978|ref|YP_001898465.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12J]
 gi|187724868|gb|ACD26033.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12J]
          Length = 197

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
             GG  L R AD +T+ D++ A +E     +C           G+CG
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99


>gi|156932917|ref|YP_001436833.1| DNA-binding transcriptional regulator IscR [Cronobacter sakazakii
          ATCC BAA-894]
 gi|189044748|sp|A7MGX6|ISCR_ENTS8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|156531171|gb|ABU75997.1| hypothetical protein ESA_00720 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 162

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A QI + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDES 86


>gi|77460834|ref|YP_350341.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384837|gb|ABA76350.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens Pf0-1]
          Length = 163

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES    +C    + DC    +C
Sbjct: 61  PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQG--QGDCHSGDTC 104


>gi|148546115|ref|YP_001266217.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida F1]
 gi|148510173|gb|ABQ77033.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida F1]
          Length = 182

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 20  MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG +L R  + I +  V+ A  ES     C
Sbjct: 80  PGGGYQLSRGMETIQVAQVIDAVNESVDATRC 111


>gi|295676234|ref|YP_003604758.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1002]
 gi|295436077|gb|ADG15247.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1002]
          Length = 149

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   + + + ++L  L +AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QIT+LDV +A E+    A+ FA H+
Sbjct: 61 GGGALLARRPEQITLLDVYRAVED----AQLFALHR 92


>gi|17545737|ref|NP_519139.1| hypothetical protein RSc1018 [Ralstonia solanacearum GMI1000]
 gi|17428031|emb|CAD14720.1| putative of unknown function upf0074; transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|299066983|emb|CBJ38178.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CMR15]
          Length = 193

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 18/141 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111
             GG  L R AD +T+ D++ A +E     +C           G+CG        +T  L
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCGGEEHSGRCMTHDL 112

Query: 112 RKALNA-FFDVLTQYSIECLV 131
              LN    + L   S++ LV
Sbjct: 113 WATLNQKMVEYLDSVSLQNLV 133


>gi|18310768|ref|NP_562702.1| hypothetical protein CPE1786 [Clostridium perfringens str. 13]
 gi|18145449|dbj|BAB81492.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 128

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I  I++   ISE +L ++   L KA +++++RG +GG  L R  + IT+ D+++  E   
Sbjct: 3   IKSISQRQNISEYYLEQLFSSLRKAKLIKSIRGAQGGYILNRQPEDITVSDIIEVLEGPI 62

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
            +++C     + C  V  C    + +K   +  +V    +++ +V +  ++K+
Sbjct: 63  EISDCLDG--VTCNNVDCCATRLLWKKIKTSIDEVTNSVTLKDIVEDYKAMKE 113


>gi|291457248|ref|ZP_06596638.1| transcriptional regulator family protein [Bifidobacterium breve DSM
           20213]
 gi|291381083|gb|EFE88601.1| transcriptional regulator family protein [Bifidobacterium breve DSM
           20213]
          Length = 135

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  L+Y    N + P++I  +AE  C +   + K+++PL  AG+  T  G  GG  L +P
Sbjct: 1   MHALVYLDHRNTHLPSQI--LAENICTNAARVRKVMRPLAAAGLAATKEGAEGGYALAQP 58

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A  IT+  V +AT  +F  A           +   C ++S +   ++  +D L +  +E 
Sbjct: 59  AADITLSTVAEATGTTFVDANWKPG-----DIHEECLVSSSMGAVMDGIYDGLNRTCLEQ 113

Query: 130 LVR 132
           L  
Sbjct: 114 LAH 116


>gi|207725261|ref|YP_002255657.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|206590495|emb|CAQ37457.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
          Length = 193

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
             GG  L R AD +T+ D++ A +E     +C           G+CG
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99


>gi|91788050|ref|YP_549002.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697275|gb|ABE44104.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 178

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  N  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQNSGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
             GG  L R A +IT+ D++ + +E     +C    K +C   G   +T  L  +LN+  
Sbjct: 61  PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGGRCMTHELWASLNSRM 118

Query: 118 --FFDVLT-------QYSIECLVRNRSSIKK 139
             F D +T       Q +   +V N   +KK
Sbjct: 119 VEFLDSVTLQKLVDDQLAKGVVVENTPQVKK 149


>gi|319953691|ref|YP_004164958.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola
           DSM 14237]
 gi|319422351|gb|ADV49460.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola
           DSM 14237]
          Length = 136

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L + A   D  P +IS+IA A  IS+ FL  IL  L K G + + +G+ 
Sbjct: 2   LSKKTKYGLKALTFLAQQVDRQPVQISEIANAENISQKFLETILLSLRKTGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  V++  E    +  C    F     DCP   +CG+  ++ +  ++
Sbjct: 62  GGYYLIKDPAEIQMASVMRVLEGPISMVPCVSLNFYEKCDDCPDEAACGVHKLMLQVRDS 121

Query: 118 FFDVLTQYSIECLV 131
             ++    S+  L+
Sbjct: 122 NLEIYRNTSLADLI 135


>gi|81230337|ref|YP_398716.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|215481753|ref|NP_665782.3| ANL44 [Synechococcus elongatus PCC 7942]
 gi|157400503|gb|AAM81169.3|AF441790_40 ANL44 [Synechococcus elongatus PCC 7942]
 gi|81170309|gb|ABB58647.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 144

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           +I +IA    +   +L +IL  L K G + + RGR GG RL R   QI ++D+  + EE+
Sbjct: 28  QIEEIASQQHLPTKYLGQILTLLRKQGFLISQRGRHGGYRLAREPWQIRLIDIYYSLEEA 87

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
                   SH     +V    +  +L +   A+ + L  Y+++ L
Sbjct: 88  QQAGASLPSHATSSAMV----VDQLLHQIEAAWREPLEHYTLQDL 128


>gi|207743635|ref|YP_002260027.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
 gi|206595034|emb|CAQ61961.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
          Length = 193

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
             GG  L R AD +T+ D++ A +E     +C           G+CG
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 99


>gi|70732290|ref|YP_262046.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas fluorescens Pf-5]
 gi|68346589|gb|AAY94195.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas fluorescens Pf-5]
          Length = 163

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  V+ A  ES    +C
Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 92


>gi|294013220|ref|YP_003546680.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676550|dbj|BAI98068.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 141

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2   LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHK--IDCPLVGSCGLTSVLRKALNA 117
           GG  L      I+  D+V+ T  S  +  C +  +H+   +C     C L  V+ +  + 
Sbjct: 62  GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121

Query: 118 FFDVLTQYSI 127
              VL   S+
Sbjct: 122 TAKVLDSISL 131


>gi|119512675|ref|ZP_01631749.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
 gi|119462690|gb|EAW43653.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
          Length = 129

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P +I QIA    I + +L ++L  L + GIV++ RG +GG  L R   +IT+ DV++   
Sbjct: 10  PMQIRQIAAQQSIPDRYLEQLLATLRRGGIVKSQRGSKGGYFLTREPWKITVFDVLECL- 68

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
           E   V  C   +      + +  +  + ++A  A   VL  Y+++ L   R S +++
Sbjct: 69  EGLDVRTCEEDNNPKS--IDTAVIKEIWQEACQAANLVLQNYTLQELCEKRDSRRQL 123


>gi|145589675|ref|YP_001156272.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048081|gb|ABP34708.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 189

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+   + P  ++ I++   IS  +L ++   L +  IVE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRETHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115
             GG  L RP++++++ D++ A +E     +C    K +C       G C +T  L   L
Sbjct: 61  PGGGYTLARPSNEVSVADIIVAVDEPLDATQCGG--KGNCHSEEDTHGRC-MTHDLWSNL 117

Query: 116 NA-FFDVLTQYSIECLVRNR 134
           N+   + L+  S++ LV+ +
Sbjct: 118 NSKMVEYLSSVSLKDLVQQQ 137


>gi|85709197|ref|ZP_01040263.1| Rrf2 family protein [Erythrobacter sp. NAP1]
 gi|85690731|gb|EAQ30734.1| Rrf2 family protein [Erythrobacter sp. NAP1]
          Length = 162

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L K  ++   V    A+  +     +  +AE   +   +L K +Q L +AGI ++VRG
Sbjct: 1  MQLAKGIEWTTHVCTIIALLPEGKGLSVDALAEFFELPAAYLSKQMQALRRAGIAQSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG RL +  D IT+LD+V A E
Sbjct: 61 KGGGYRLAQSPDAITLLDIVIAIE 84


>gi|15964324|ref|NP_384677.1| hypothetical protein SMc02267 [Sinorhizobium meliloti 1021]
 gi|307307060|ref|ZP_07586799.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307320140|ref|ZP_07599560.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|15073501|emb|CAC45143.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894186|gb|EFN24952.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306902000|gb|EFN32599.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 151

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 12/148 (8%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I++IA+   I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGQTAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC----GLTSVLRK 113
           GG  L RPA +I I  V++  +       C +        DC    +C     +TSV R 
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEMCDDCTDPETCRVRISMTSV-RD 120

Query: 114 ALNAFFDVLT--QYSIECLVRNRSSIKK 139
           A+++  D +T  +++   ++   +S++K
Sbjct: 121 AMSSILDSMTLAEFAAGGVLPPETSVEK 148


>gi|152976907|ref|YP_001376424.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025659|gb|ABS23429.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 143

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+ V+  
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVD-VQAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
           +GG  L R  D+IT+LDV KA E  E   +     +  ++CP+     + SVL     +A
Sbjct: 60  KGGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNVECPV--GANIQSVLEIILIQA 117

Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
             A   VL   +++ LV + +S I+K
Sbjct: 118 QEAMEHVLANVTVQQLVTSLQSKIQK 143


>gi|160899434|ref|YP_001565016.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
           SPH-1]
 gi|160365018|gb|ABX36631.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
           SPH-1]
          Length = 178

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  ALN 
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWAALNQ 116

Query: 118 ----FFDVLT 123
               F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|325263739|ref|ZP_08130472.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324030777|gb|EGB92059.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 142

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + ++   A+H+  ++   +  IA    +SE +L +I++ L + GIV++VR
Sbjct: 1   MKMSTKGQYALEIVADLAMHSSKEHLESLKNIANRRDLSEKYLERIIKALREKGIVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115
           G  GG  L +  + + +L+V+ A E       C        IDC   G C   +      
Sbjct: 61  GAYGGYCLEKAPEDLMVLEVLTAVEGELTPVHCLTRESNCGIDC---GLCPTRNTWSDMW 117

Query: 116 NAFFDVLTQYSIECLVR 132
           +     + Q ++  +VR
Sbjct: 118 SVMKGAVEQVTVADIVR 134


>gi|300865571|ref|ZP_07110350.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300336443|emb|CBN55500.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 147

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  +    Y P  +  IA    +   +L K+L  + ++G+V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSSQPGYGPASVKAIASRQELPAPYLEKLLIEMRRSGLVLSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R    I++  +++A  E+    E  A H  D  +       S+  +      
Sbjct: 61  TQGGYQLARRPASISLGQILEAVGETI---EPLAGHSPDATVAEDWVTFSLWNRLHKKIT 117

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   S+E L  +  S + +
Sbjct: 118 EALYSISLEDLYYDVRSWQAV 138


>gi|313618824|gb|EFR90710.1| Rrf2 family protein [Listeria innocua FSL S4-378]
          Length = 83

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1  MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
            GG  L    ++IT  D+++
Sbjct: 61 AHGGYVLNGDPEKITAGDIIR 81


>gi|157165239|ref|YP_001467135.1| Rrf2 family protein (putative transcriptional regulator)
           [Campylobacter concisus 13826]
 gi|112801375|gb|EAT98719.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter concisus
           13826]
          Length = 134

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+  +     P  +  I+    IS+ FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKDGVLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP 100
            GG  L    + ++I  +++  E+    V EC +S  + CP
Sbjct: 60  NGGFALNGEPENLSIKKIIECAEKRELSVFEC-SSSALGCP 99


>gi|86605908|ref|YP_474671.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554450|gb|ABC99408.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
          Length = 146

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +I +IA    I + +L ++L  L + G+V + RG +GG  L RP  QI++LD+++A E
Sbjct: 28 QIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGAKGGYSLARPPWQISLLDIIQAIE 85


>gi|19704228|ref|NP_603790.1| hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328864|ref|ZP_06871375.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19714456|gb|AAL95089.1| Hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153985|gb|EFG94792.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 140

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  ++ D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIIYYLTLNRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDDL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N +S++
Sbjct: 120 LDDFDKINFYDLVENNASLQ 139


>gi|325677675|ref|ZP_08157327.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
 gi|324110643|gb|EGC04807.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
          Length = 145

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++T   DY +R+    C        +   +++  C++  F  KIL+ LV AG+V++ +G
Sbjct: 1   MYITLEADYAVRITAELCKADGRLDAKT--LSDKTCVTLRFSLKILRKLVSAGLVKSFKG 58

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGS-CGLTSVL 111
            +GG  + +    IT+  V++A E ++         A+C      +CP   + C +T ++
Sbjct: 59  TQGGYMIAKSPKDITLRMVIEAIEGTYCFSRCLQPDADCSRGASGNCPFQDAFCDITKMV 118

Query: 112 RKALNAF 118
            + L  +
Sbjct: 119 SEKLETY 125


>gi|168699748|ref|ZP_02732025.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
          obscuriglobus UQM 2246]
          Length = 169

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+++ DY + +L Y    N        IAE   +S  F+  IL+ L ++G V + RG +G
Sbjct: 4  LSRKADYALLILSYL-YQNKSGGTARAIAEQFGLSRSFVANILKELCQSGFVASHRGVKG 62

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH 95
          G  L R A  +++ ++++  E+ F +  C   H
Sbjct: 63 GYALSRDAAGVSLAELLETVEDGFRLTVCNTVH 95


>gi|52081678|ref|YP_080469.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
 gi|52787064|ref|YP_092893.1| hypothetical protein BLi03369 [Bacillus licheniformis ATCC 14580]
 gi|319647593|ref|ZP_08001812.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
 gi|52004889|gb|AAU24831.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
 gi|52349566|gb|AAU42200.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|317390319|gb|EFV71127.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
          Length = 144

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + +D+     QIA++   + + + +I + L KAG++E  RG 
Sbjct: 1   MKISSRFTIAVHMLSLMHVRSDHLTS-EQIADSVNTNPVIIRQISRLLKKAGLIEVKRG- 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSC---GLTSVLRKAL 115
            GG  L R A  I++ DV KA  E     E F +H+   P   VG+     L  VL KA 
Sbjct: 59  TGGAHLLRDAGAISLYDVYKAV-EVVGEGELFHTHENPNPDCWVGANIHQVLELVLLKAQ 117

Query: 116 NAFFDVLTQYSIECL 130
            A  ++L + SI+ L
Sbjct: 118 TAMENILKEMSIKEL 132


>gi|73541761|ref|YP_296281.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72119174|gb|AAZ61437.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 144

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A  ++ P   S IA +   +   + +++  L +AG+V ++ G 
Sbjct: 1   MTTSSRFAVAVHILTLLASASE-PLPSSLIAGSVGTNPALIRRLIGQLAEAGLVTSIMGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117
            GG  L RPA++IT+LDV +A E +  +    ++    C +VG   +  L  V  +A +A
Sbjct: 60  TGGSTLSRPAERITLLDVFRAVETTALITLHQSAPNPAC-MVGREITGALRQVADRAQSA 118

Query: 118 FFDVLTQYSIECLV 131
             + L + +I  ++
Sbjct: 119 MDNALAEITIASML 132


>gi|39996447|ref|NP_952398.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39983327|gb|AAR34721.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
          Length = 153

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ ++Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKAMLYLARERDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I++  +++  E      +C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAQSPREISMGRIIRILEGPLAPVQCVSETSYSRCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVL 122
              +L
Sbjct: 122 MATIL 126


>gi|221066571|ref|ZP_03542676.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|264678869|ref|YP_003278776.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Comamonas testosteroni CNB-2]
 gi|299532420|ref|ZP_07045812.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
 gi|220711594|gb|EED66962.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|262209382|gb|ACY33480.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           CNB-2]
 gi|298719658|gb|EFI60623.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
          Length = 178

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  ALN 
Sbjct: 61  PGGGYTLARKATDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWAALNQ 116

Query: 118 ----FFDVLT 123
               F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|260654665|ref|ZP_05860155.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
 gi|260630681|gb|EEX48875.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
          Length = 133

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  IA+   +S+ +L +++  L +AG++ + RG  GG  L +   +ITIL++V+A+ 
Sbjct: 14  PVSVMDIAQREELSDTYLEQLVSKLRRAGLLRSYRGANGGYELAKDPSEITILEIVQASG 73

Query: 84  ESFFVAECFASHKIDCPLV---GS-CGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           E     EC  + K  C L    GS C      RK  +A  ++    ++E L+   S
Sbjct: 74  EKLEFPECAFNEK-GCELARQRGSVCPSAFFWRKLSSAVLELSRSMTLEDLLSQSS 128


>gi|77165949|ref|YP_344474.1| hypothetical protein Noc_2491 [Nitrosococcus oceani ATCC 19707]
 gi|254433726|ref|ZP_05047234.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
 gi|76884263|gb|ABA58944.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207090059|gb|EDZ67330.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
          Length = 158

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDY I ++   A+     +  + ++    +    + KIL+ L +AG++ + RG 
Sbjct: 2   LRMSKMTDYAIVLMTRLAMDPKGQHAAADLSAQVEMPLPTVSKILKQLARAGLLLSARGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L RP + I++ +++   E    + EC ++   +C     C   +   +   A + 
Sbjct: 62  QGGYSLGRPPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCSTRAHWEQINQAVYG 120

Query: 121 VLTQYSIECLVR 132
            L +  +  +V+
Sbjct: 121 ALNEIKLSDMVQ 132


>gi|83313117|ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82947958|dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 121

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + ++L  L KAG+V + RG  GG  L RPAD+I++LD+ +A +E    A
Sbjct: 11  IAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHRAVDEEEEPA 70

Query: 90  ECFASHKIDCPL 101
                    CP+
Sbjct: 71  LHNQPPNPACPV 82


>gi|317470881|ref|ZP_07930261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|316901625|gb|EFV23559.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 145

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 18/120 (15%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P +   ++E   +S+ +L KI++ LV AG+V++  G++GG  L R    I++LDV +A E
Sbjct: 25  PVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAGKKGGFVLKRAPKNISLLDVFEAIE 84

Query: 84  ------------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
                       +  F  E   +H+ +  ++      SV  +A  A+   L+Q++++ +V
Sbjct: 85  STAPFLSTTNLVDKVFPKEKMIAHEKEQQII------SVFTRAEQAYRQSLSQFTLDHVV 138


>gi|269962422|ref|ZP_06176772.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
 gi|269832918|gb|EEZ87027.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
          Length = 155

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  IAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 102


>gi|83858482|ref|ZP_00952004.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853305|gb|EAP91157.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 155

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  ++  A  + + P  +  IA    IS  +L ++   L +AG+V++VRG
Sbjct: 1  MKLSTKGRYAVMAMVDLAQASLEKPVPLGDIASRQEISLSYLEQLFAKLRRAGVVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L RP  +  I D++ A EE   V  C
Sbjct: 61 PGGGYKLARPLGETRIADIMLAVEEPVDVTRC 92


>gi|113475528|ref|YP_721589.1| BadM/Rrf2 family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110166576|gb|ABG51116.1| transcriptional regulator, BadM/Rrf2 family [Trichodesmium
           erythraeum IMS101]
          Length = 147

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++  ++ P  + +IA    I   +L K+L  + + G+V + RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQQSNTPVSVKEIAVRQNIPVAYLEKLLIEMRRGGLVVSFRG 60

Query: 60  RRGGVRLCRPADQIT---ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            +GG +L +   QI+   IL+ V  T E  F     ASH  D   V  C    + +K   
Sbjct: 61  AQGGYQLAKLPAQISLGEILESVGETIEPLFKYTPNASHAEDW--VTYCIWHRIHKKLSE 118

Query: 117 AFFDV 121
           A +++
Sbjct: 119 ALYNI 123


>gi|262395130|ref|YP_003286984.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
 gi|262338724|gb|ACY52519.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
          Length = 158

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAE 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           A  I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  AHSIAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 105


>gi|118475649|ref|YP_892090.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414875|gb|ABK83295.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 125

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  I++   +S+ +L ++L  L  AG V +++G +GG  L +  D+IT  D+  A E
Sbjct: 14  PVSLKDISQNIGVSKNYLEQVLNTLRNAGFVSSIKGLKGGYFLNKTLDEITFYDIFYALE 73

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
             F +      H             LT +  K L++F +  +Q
Sbjct: 74  NDFGLTSLNVEHSSYNLFFKEYNEKLTELFSKPLSSFKEYQSQ 116


>gi|148253999|ref|YP_001238584.1| BadM/Rrf2 family transcriptional regulator [Bradyrhizobium sp.
           BTAi1]
 gi|146406172|gb|ABQ34678.1| transcriptional regulator, BadM/Rrf2 family [Bradyrhizobium sp.
           BTAi1]
          Length = 158

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ L++ A        +S  IAE   IS+ FL  IL+ L +AG+V   +G  
Sbjct: 2   LSAKGKYGLKALIHLASLEPGEQALSADIAETNNISKKFLDAILRELRQAGLVRAKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGL---TSVLRKA 114
           GG  L RPA  I +   ++  +       C +        DC    +C +    + +R A
Sbjct: 62  GGYALARPARSIKVGQAIRHLDGPLAPIACASRSAYRPCRDCRDPKACAVRLTMTQVRDA 121

Query: 115 LNAFFDVLTQYSI 127
           ++   D +T Y +
Sbjct: 122 ISGVLDQMTLYEL 134


>gi|269965159|ref|ZP_06179293.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
 gi|269830145|gb|EEZ84372.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
          Length = 155

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGADAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I I  V+ A +ES    +C    K DC     C LT  L + L++
Sbjct: 61  IAIGTVIAAVDESVDATKCQG--KGDCQGGTRC-LTHTLWRDLSS 102


>gi|284989652|ref|YP_003408206.1| BadM/Rrf2 family transcriptional regulator [Geodermatophilus
           obscurus DSM 43160]
 gi|284062897|gb|ADB73835.1| transcriptional regulator, BadM/Rrf2 family [Geodermatophilus
           obscurus DSM 43160]
          Length = 165

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +IA A  I   FL  IL  L  A +V + RGR GG RL  P  +++I  V++   E  F+
Sbjct: 33  RIAAAQGIPSRFLQSILSDLQHARLVTSQRGREGGYRLALPPAEVSIARVMRV--EQGFL 90

Query: 89  AECFASHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131
           AE       D    G+   L SV   A  A+  VL Q ++  +V
Sbjct: 91  AEVHGQRPEDVEYSGTAVPLASVWVAAREAYRRVLEQVTLADVV 134


>gi|209550103|ref|YP_002282020.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535859|gb|ACI55794.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 162

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 16/128 (12%)

Query: 17  CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           CAI    P         +AE   + + +L K LQ L +A +V+T  G  GG RL RP+ +
Sbjct: 14  CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARPSSE 73

Query: 73  ITILDVVKATEESFFVAECFASHKI----DCPLVG-----SCGLTSVLRKALNAFFDVLT 123
           I  LD+V+A E     A  F    I     C   G      C +  ++ +A  A+ D L 
Sbjct: 74  INFLDIVEAVEGK---ARSFTCTNIRDNNPCRPAGYCDSKPCAVARIMWEADEAWRDTLR 130

Query: 124 QYSIECLV 131
           +  +  LV
Sbjct: 131 RVRLSDLV 138


>gi|89100970|ref|ZP_01173815.1| YrzC [Bacillus sp. NRRL B-14911]
 gi|89084306|gb|EAR63462.1| YrzC [Bacillus sp. NRRL B-14911]
          Length = 139

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V ++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPISLKSIAQTNDLSEHYLEQLIAPLRNAGLVRSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L      IT  D+++  E
Sbjct: 61 AYGGYVLGHEPADITSGDIIRVLE 84


>gi|317128228|ref|YP_004094510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Bacillus cellulosilyticus DSM 2522]
 gi|315473176|gb|ADU29779.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
          cellulosilyticus DSM 2522]
          Length = 139

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ ++M  A  + + P  +  IA    +SE +L +++ PL  A +V++VRG
Sbjct: 1  MKISTKGRYGLTIMMALAKKYGEGPISLKSIAIDHDLSEHYLEQLIAPLRNATLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L +  +QIT  D+++  E
Sbjct: 61 AYGGYMLSKSPEQITAGDIIRVLE 84


>gi|67459239|ref|YP_246863.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia felis URRWXCal2]
 gi|67004772|gb|AAY61698.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia felis URRWXCal2]
          Length = 139

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  +L   A  +  P  +++I+    IS  +L +I   L KA +V+ +RG
Sbjct: 1  MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L    ++I I D++ A  E+F +  C+
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93


>gi|260773391|ref|ZP_05882307.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP
          69.14]
 gi|260612530|gb|EEX37733.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP
          69.14]
          Length = 160

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  I+I  V+ A +
Sbjct: 12 PVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASTISIGTVIAAVD 71

Query: 84 ESFFVAECFASHKIDC 99
          ES    +C    K DC
Sbjct: 72 ESVDATKCHG--KGDC 85


>gi|167748622|ref|ZP_02420749.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
 gi|167651936|gb|EDR96065.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
          Length = 145

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 18/120 (15%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P +   ++E   +S+ +L KI++ LV AG+V++  G++GG  L R    I++LDV +A E
Sbjct: 25  PVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAGKKGGFVLKRAPKNISLLDVFEAIE 84

Query: 84  ------------ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
                       +  F  E   +H+ +  ++      SV  +A  A+   L+Q++++ +V
Sbjct: 85  STAPFLSTTNLVDKVFPKEKMIAHEKEQQII------SVFTRAEQAYRQSLSQFTLDHVV 138


>gi|304311801|ref|YP_003811399.1| Regulator of the isc operon [gamma proteobacterium HdN1]
 gi|301797534|emb|CBL45754.1| Regulator of the isc operon [gamma proteobacterium HdN1]
          Length = 166

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  +++I+E   IS  +L ++   + +  +V++VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHTGKGPVSLAEISERQGISISYLEQLFAKMRRKDLVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L R    I + +++ A +ES     C      DC    +C LT  L + L+   
Sbjct: 61  PGGGYLLSRDGSTICVAEIIDAVDESVDATRCQGLG--DCQNGETC-LTHDLWQELSIEI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
              L   S++ LV +RS I++I
Sbjct: 118 HRFLGGISLKSLV-SRSQIQQI 138


>gi|284034151|ref|YP_003384082.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813444|gb|ADB35283.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida
          DSM 17836]
          Length = 158

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA---TEESF 86
          +L K LQ L +AGI+ +  G +GG +L RP D+IT+LD+V A    +E+F
Sbjct: 38 YLNKQLQALTRAGILSSTSGPKGGFQLARPTDRITLLDIVVAIDGPDEAF 87


>gi|154484576|ref|ZP_02027024.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
           27560]
 gi|149734424|gb|EDM50341.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
           27560]
          Length = 151

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +RV++  A  ND  + +S   +AE   IS  +L  I+  L K  +V++ R
Sbjct: 16  MMISTKGRYALRVMIDLA-QNDGESFVSLKDVAERQGISMKYLEMIVSLLHKGHMVKSQR 74

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +   + TI  ++K TE +     C       C     C    + +K  +  
Sbjct: 75  GKAGGYKLVKKPAEYTIGSILKLTEGTLAPVGCLEEGAEKCDRATECITLPLWKKLDDQI 134

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++E LV  R
Sbjct: 135 DEYLESVTLEDLVEGR 150


>gi|114705805|ref|ZP_01438708.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
 gi|114538651|gb|EAU41772.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
          Length = 138

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++R  Y IR +   A     P   + IAE   I + FL  IL  L +AG + + RG+ G
Sbjct: 2   ISQRARYAIRAVFNVA-DRSTPVSAAVIAEEEAIPKKFLEAILADLKQAGFLASSRGKNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNAF 118
           G  L  P  +I+  D+++  +    +A C +        DC  V +C     L +  +A 
Sbjct: 61  GYLLALPPAEISFADILRVIDGPLALAPCASRTAYRRCADCKDVETCETRKALLRVRDAT 120

Query: 119 FDVL 122
            ++L
Sbjct: 121 AEIL 124


>gi|307543983|ref|YP_003896462.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halomonas elongata DSM 2581]
 gi|307216007|emb|CBV41277.1| transcriptional regulator, BadM/Rrf2 family [Halomonas elongata DSM
           2581]
          Length = 183

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ IA+   IS  +L ++   L + G+V++VRG
Sbjct: 29  MRLTTKGRYAVTAMLDLAMHADEGPICLADIAKRQEISLSYLEQLFARLRRRGLVDSVRG 88

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L    + I++  V+ A +ES     C      DC    +C    L + L + ++
Sbjct: 89  PGGGYLLTLSPEAISVAQVIDAVDESVDATRCGG--MSDCQQGDTCLTHHLWNELSEQIH 146

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 147 GFLDGVT 153


>gi|89068825|ref|ZP_01156208.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanicola granulosus HTCC2516]
 gi|89045595|gb|EAR51658.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanicola granulosus HTCC2516]
          Length = 143

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          + +++    IS  +L ++   L +AG+VE+VRG  GG RL RPA +I + DV+ A +E+
Sbjct: 18 LGEVSRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLARPASEIRVADVLGAVDET 76


>gi|329945233|ref|ZP_08293064.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529276|gb|EGF56197.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 165

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K  ++    L+   +        + +A    +S  +L K LQ L  AGIV +V G 
Sbjct: 1   MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG RL +PA ++++ DVV A   +  + +C        F   K      G C +   + 
Sbjct: 61  SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFVDQKSRILASGLCSINRAMS 120

Query: 113 KALNAFFDVLTQYSIECLV 131
            A +A+   L   SI  L 
Sbjct: 121 LAEDAWRASLAGTSIADLA 139


>gi|258541842|ref|YP_003187275.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
          pasteurianus IFO 3283-01]
 gi|256632920|dbj|BAH98895.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-01]
 gi|256635977|dbj|BAI01946.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-03]
 gi|256639032|dbj|BAI04994.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-07]
 gi|256642086|dbj|BAI08041.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-22]
 gi|256645141|dbj|BAI11089.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-26]
 gi|256648196|dbj|BAI14137.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-32]
 gi|256651249|dbj|BAI17183.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-01-42C]
 gi|256654240|dbj|BAI20167.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
          3283-12]
          Length = 149

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 13 VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +++  A H      +S   IAE   ++   +  +LQ L ++G++E++RG RGG RL RP 
Sbjct: 14 IMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLGRPR 73

Query: 71 DQITILDVVKA 81
            I+++D+++A
Sbjct: 74 RDISLVDIIEA 84


>gi|302877884|ref|YP_003846448.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302580673|gb|ADL54684.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 151

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++    P  ++ I+E   IS  +L ++   L ++ +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMVDLAMNGGRGPVTLASISERQKISLSYLEQLFGKLRRSNLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L + A +I I ++V A +E      C  + K DC     C LT  L   LN   
Sbjct: 61  PGGGYYLAKTATKIKIAEIVVAVDEPLDATYC--AEKGDCRDGQPC-LTHNLWMGLNERI 117

Query: 119 FDVLTQYSIECLVRNRS 135
           +  L   +++ LV  +S
Sbjct: 118 YSYLDSINLQQLVEGQS 134


>gi|254476324|ref|ZP_05089710.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030567|gb|EEB71402.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 142

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  I++   IS  +L ++   L +AG+V++VRG  GG RL RPA +I ++DV+ A +E+
Sbjct: 18 LGDISKRQDISLPYLEQLFVKLRRAGLVDSVRGPGGGYRLARPASEIRVVDVLGAVDET 76


>gi|226946079|ref|YP_002801152.1| Iron-sulfur cluster assembly transcription factor IscR
          [Azotobacter vinelandii DJ]
 gi|6137265|sp|O69219|YOR2_AZOVI RecName: Full=Putative HTH-type transcriptional regulator ORF2
 gi|3046321|gb|AAC24480.1| unknown [Azotobacter vinelandii]
 gi|226721006|gb|ACO80177.1| Iron-sulphur cluster assembly transcription factor IscR
          [Azotobacter vinelandii DJ]
          Length = 164

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRNSLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I + +V+ A  ES  V  C
Sbjct: 61 PGGGYQLSRSMAAIQVAEVIDAVNESVDVTRC 92


>gi|294506739|ref|YP_003570797.1| transcriptional regulator [Salinibacter ruber M8]
 gi|294343067|emb|CBH23845.1| Transcriptional regulator [Salinibacter ruber M8]
          Length = 162

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAI---------HNDYPNR----ISQIAEACCISELFLFKILQP 47
           M L+K  +YG+R ++Y             +  P R    I  I++   I   FL K+ Q 
Sbjct: 1   MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 60

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           L  AG++ + RG  GGV L R  D I++ ++V A + +    EC
Sbjct: 61  LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEEC 104


>gi|292669316|ref|ZP_06602742.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
           43541]
 gi|292649157|gb|EFF67129.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
           43541]
          Length = 147

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L+   +++ D P     +A +  +  + + +IL  L +AG++   RG
Sbjct: 1   MQISSRFTIAIHILICVDLYSADAPATSESLAGSIGVHPVVIRRILGQLRRAGLITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           R GG  + RP  +IT+ D+ +A  ES      F+ H+   P
Sbjct: 61  REGGAHIVRPLGEITLADIFRAV-ESIGSDTLFSFHENPNP 100


>gi|257468365|ref|ZP_05632459.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium
          ulcerans ATCC 49185]
 gi|317062638|ref|ZP_07927123.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313688314|gb|EFS25149.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 144

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+ T+  I+ ++Y + +     +    I ++   S+ F+ K+L+PL  A IV   RG
Sbjct: 1  MKITQETNCAIKTILYLSTLQKGEISPAKTIGKSIGFSDKFVLKVLRPLTSANIVLPFRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L +  D+IT+ DV+ A +  
Sbjct: 61 VTGGYCLGKTTDKITLFDVIVAVQND 86


>gi|254509783|ref|ZP_05121850.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533494|gb|EEE36482.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
          Length = 134

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     S IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGKLREAGLLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RP   I++ DV  A +E    ++  +    + P   +C +   L+K ++   +
Sbjct: 61  AGGWRLARPPQNISLADVYLALDERLVASDEIS----EAP---ACSVEHALQKRVSGVLE 113

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + Q  ++ L    +SI ++  A
Sbjct: 114 EIEQSLVQKL--GETSISEVRGA 134


>gi|76666808|emb|CAJ31186.1| Transcriptional regulator [uncultured sulfate-reducing bacterium]
          Length = 182

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ R  Y +R+++  A H +  N +   SQ++    IS  +L +++  L  A ++   
Sbjct: 22  MKLSTRARYALRLMVTLARHTNGDNSVVSLSQVSREAKISRRYLEQLVIGLKNASLIRGR 81

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
            G+ GG  L  PADQI I  ++++      + EC    +I
Sbjct: 82  SGKGGGYCLALPADQIRIRQIIESAIGPINIVECVMQPEI 121


>gi|315650361|ref|ZP_07903433.1| transcription regulator [Eubacterium saburreum DSM 3986]
 gi|315487472|gb|EFU77782.1| transcription regulator [Eubacterium saburreum DSM 3986]
          Length = 139

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
            IA+   ISE +L  I++ LVK  ++  +RG+ GG +L +    IT+ +V++  EE+  +
Sbjct: 30  DIAKRQDISEKYLESIIKLLVKNKLLVGLRGKGGGYKLTKRPSDITVGEVLRIAEENIMI 89

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
            E             +  + S L K +N +FD ++
Sbjct: 90  DEEDTESMYRTSEYRTIDMWSKLSKMINDYFDSIS 124


>gi|296170194|ref|ZP_06851788.1| Rrf2 family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895146|gb|EFG74863.1| Rrf2 family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 159

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ + +Y +R ++  A + +    +   +A+A  I   FL  IL  L    +V + RGR 
Sbjct: 1   MSAKAEYAVRAMVQLATVPHGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFD 120
           GG  L RP D+I+I DV++  +              D P  G +  LT V R    +   
Sbjct: 61  GGYELARPGDEISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASMRS 118

Query: 121 VLTQYSIECLVRN 133
           VL + ++  +  N
Sbjct: 119 VLEETTLADVAAN 131


>gi|282901029|ref|ZP_06308962.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194120|gb|EFA69084.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 160

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+ IA    I E +L +IL  L +AG+V++ RG +GG  L R   +I++L++V     S 
Sbjct: 46  INDIAAKQPIPERYLEQILTQLRRAGVVQSQRGSKGGFLLVREPWEISLLEIV-----SL 100

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
              E       +   +    +  +  +A  A  +VL +Y+++ L + R 
Sbjct: 101 IEGERNEKRNANVLTIEKTLVWEIWERANTASVEVLGRYTLQDLCQERE 149


>gi|222055077|ref|YP_002537439.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564366|gb|ACM20338.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 141

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  A+++   P  + +IA+   I   +L ++   L   GIV ++RG
Sbjct: 1   MRLSTRAQYAVRAMVDLALYSTSKPVSLKEIAQREEIPLSYLEQLFFRLKNGGIVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R +  I + ++V   EE      C       C  +  C    +   L + + 
Sbjct: 61  PGGGYILARESSLIKVGEIVVTVEEPLSPVACMDEGSTGCSRISQCVTHNIWKGLGEKIR 120

Query: 117 AFFDVLT 123
            F D +T
Sbjct: 121 GFLDGIT 127


>gi|269926805|ref|YP_003323428.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum
          terrenum ATCC BAA-798]
 gi|269790465|gb|ACZ42606.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum
          terrenum ATCC BAA-798]
          Length = 178

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 6  RTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          R +YG+R++M  A  +   P  ++++AE   +   +L +++  L + G+V + RG +GG 
Sbjct: 12 RAEYGVRLMMMLAREYGKGPLSLARVAEEELLPLPYLEQLIANLRRDGLVVSHRGAKGGY 71

Query: 65 RLCRPADQITILDVVKATE 83
           L +P ++IT+ +++++ E
Sbjct: 72 ELAKPPEEITMGEIIRSLE 90


>gi|225848837|ref|YP_002729001.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643212|gb|ACN98262.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 142

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 11 IRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          IR L+Y A++ D     + +I+EA  +   FL K +Q LVK GI+E+ RG +GG+   +P
Sbjct: 10 IRALIYLALNQDKEYISVKEISEALNLPFFFLAKNIQKLVKEGILESYRGPKGGISFKKP 69


>gi|163857206|ref|YP_001631504.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260934|emb|CAP43236.1| putative transcriptional regulator [Bordetella petrii]
          Length = 160

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRV-LMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +++  ++ +   L    + ND  +   +++A A  +   +L K LQ LVKAGI+ +  
Sbjct: 1   MKMSEGVEWALHCCLTLAWLDNDGASVPTARLAAAFELPPAYLNKCLQLLVKAGILVSTA 60

Query: 59  GRRGGVRLCRPADQITILDVVKA---TEESFFVAEC----FASHKIDCPLVGSCGLTSVL 111
           G +GG RL R   +IT+LDVV A    E +F  AE       +       V  CG+   +
Sbjct: 61  GVKGGFRLARAPARITLLDVVTAIEGPEGAFRCAEIRQRGAGASASPREFVRPCGIAVAM 120

Query: 112 RKALNAFFDVLTQYSIECLV 131
           R+A  A+   L   ++  L+
Sbjct: 121 RRAETAWRRELAAQTVADLL 140


>gi|317471927|ref|ZP_07931261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|316900593|gb|EFV22573.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 145

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A HN      +  +++   IS  +L +I++ L   G ++++RG
Sbjct: 1   MKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
            RGG +L +   + TI DV++ TE S     C       C     C       GL  V+R
Sbjct: 61  PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 120

Query: 113 KALNA 117
             L +
Sbjct: 121 DYLGS 125


>gi|42526191|ref|NP_971289.1| hypothetical protein TDE0676 [Treponema denticola ATCC 35405]
 gi|41816303|gb|AAS11170.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 139

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+ +  ++ + + KIL  L KAG+VET  G  GG  L + AD+IT+LDV  A  E     
Sbjct: 31  ISASTGVNAVIIRKILLQLQKAGLVETAAGV-GGSHLAQTADKITLLDVYNAINEGDEER 89

Query: 90  ECFASH---KIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           + F  H      CP VG      L   L  A NA  D L++ +I  L ++
Sbjct: 90  DIFNFHPKPNPKCP-VGRKIHLVLDDKLDDAQNAMKDSLSKTTIADLSKD 138


>gi|309789575|ref|ZP_07684156.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
          DG6]
 gi|308228311|gb|EFO81958.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
          DG6]
          Length = 146

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + DYG+R L   A  + + P +  +IA    I   +L ++L  + +AG++E++RG
Sbjct: 1  MRISSKGDYGLRALFDLAQRYGEGPVQSEEIAIRQGIPVNYLNQLLITMRRAGLIESLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L R  + IT+ D +   E     AE 
Sbjct: 61 PQGGHMLARSPETITLRDAIIVLEGPLLPAEA 92


>gi|113867763|ref|YP_726252.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113526539|emb|CAJ92884.1| putative transcriptional regulator [Ralstonia eutropha H16]
          Length = 185

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +  +AE   +   FL K+   L KA +V    G +GG RL RPA+ IT+ DVV A +   
Sbjct: 30  VRDLAELQGVPHDFLAKLFTKLAKAKLVVATEGIKGGFRLARPANHITVHDVVVAIDGEK 89

Query: 87  FVAECF------ASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            + +C       A    D P     G C + +V++ A  A    L ++++  L
Sbjct: 90  PLFDCLEIRGRCAVFNDDAPGWATRGVCSIQAVMQAAEKAMRAELKRHTLADL 142


>gi|28868629|ref|NP_791248.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971530|ref|ZP_03399641.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
 gi|301386135|ref|ZP_07234553.1| rrf2 family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060165|ref|ZP_07251706.1| rrf2 family protein [Pseudomonas syringae pv. tomato K40]
 gi|302135108|ref|ZP_07261098.1| rrf2 family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851867|gb|AAO54943.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923722|gb|EEB57306.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
 gi|330872891|gb|EGH07040.1| rrf2 family protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
 gi|330965903|gb|EGH66163.1| rrf2 family protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
 gi|331019392|gb|EGH99448.1| rrf2 family protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 163

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  VV A  ES     C
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92


>gi|330957514|gb|EGH57774.1| rrf2 family protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 163

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  VV A  ES     C
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92


>gi|330466620|ref|YP_004404363.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809591|gb|AEB43763.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 151

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 24/144 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R DY +R  +  A    YP  +S   I+    +   FL  +L  L +AG+V   R
Sbjct: 1   MQISARGDYAVRAALSLAAA--YPALLSTQTISAEQDMPRKFLEAVLADLRRAGVVRAQR 58

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RP  ++T+  V++A               ++ PL G  GL     +     
Sbjct: 59  GAEGGYALARPPREVTVGAVLRA---------------VEGPLAGVRGL-----RPEETS 98

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           ++ + Q+     V  R+S++++ +
Sbjct: 99  YEGVAQHLPGFWVAVRASLRRVVD 122


>gi|297191372|ref|ZP_06908770.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197720618|gb|EDY64526.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 160

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          G+   ++C +     + P   +++AE   +S  +L K LQ L +AG+V +V+G+ GG  L
Sbjct: 6  GVEWALHCCVVLTSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGKAGGYVL 65

Query: 67 CRPADQITILDVVKATE 83
           R    IT+LDVV+A +
Sbjct: 66 TREPASITVLDVVEAVD 82


>gi|304407103|ref|ZP_07388757.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
          curdlanolyticus YK9]
 gi|304344090|gb|EFM09930.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
          curdlanolyticus YK9]
          Length = 143

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
           L KIL  L +A ++ET  GR GG RL RPA+QIT+ +V +A
Sbjct: 47 LLRKILATLARASLIETREGRDGGYRLLRPAEQITLAEVYQA 88


>gi|225025112|ref|ZP_03714304.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
           23834]
 gi|224942073|gb|EEG23282.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
           23834]
          Length = 173

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  + P  ++ I+    IS  +L ++   L +AG+VE+VRG
Sbjct: 22  MRLTTKGRFAVTAMLDLALYGRENPVSLNAISGRQNISLSYLEQLFGKLRRAGLVESVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R    I I +++ A E+      C    + +C     C LT  L ++LN
Sbjct: 82  PGGGYLLSRQPGSINIAEIIYAAEDKLDATRCGG--QTNCHKGAPC-LTHDLWESLN 135


>gi|194017204|ref|ZP_03055816.1| YrzC [Bacillus pumilus ATCC 7061]
 gi|194011072|gb|EDW20642.1| YrzC [Bacillus pumilus ATCC 7061]
          Length = 164

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  A +V+++RG
Sbjct: 26  LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATE 83
             GG  L    ++IT  D+++  E
Sbjct: 86  AYGGYVLAHEPNEITAGDIIRVLE 109


>gi|218516163|ref|ZP_03513003.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 123

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  + D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121


>gi|312868528|ref|ZP_07728728.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
           F0405]
 gi|311096273|gb|EFQ54517.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
           F0405]
          Length = 147

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +     S  +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  L + AD+I++LD+ +A E      + F  H    P
Sbjct: 61  T-GGAELAKAADEISLLDIYQAVECLGSTGQLFGFHDNPNP 100


>gi|326203774|ref|ZP_08193637.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          papyrosolvens DSM 2782]
 gi|325986214|gb|EGD47047.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          papyrosolvens DSM 2782]
          Length = 148

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +  YGI  ++  A    + D+   IS I+E   IS+++L ++   L ++ +V ++
Sbjct: 1  MRISSKGRYGIASMICVAQLGRNGDFVTVIS-ISEKLGISKIYLEQVFSLLKRSKLVSSI 59

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFF 87
          +G +GG +L +  ++IT  D+++A E S F
Sbjct: 60 KGSQGGYQLTKSPEKITAYDILQAVEISLF 89


>gi|222084808|ref|YP_002543337.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722256|gb|ACM25412.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 166

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + IAE   +S  +L K LQ L  AGI++TV G +GG RL R    I++LD+V A E
Sbjct: 29 AAIAEFHGVSVSYLLKHLQALSGAGILDTVPGPKGGYRLARLPKDISLLDIVLAVE 84


>gi|198282957|ref|YP_002219278.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666431|ref|YP_002425160.1| iron-sulfur cluster assembly transcription factor IscR
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247478|gb|ACH83071.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518644|gb|ACK79230.1| iron-sulfur cluster assembly transcription factor IscR
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 162

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++       ++ I++   IS  +L ++   L + G+VE+VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLALNQRGGVVTVADISQRQQISVAYLEQLFGRLRRFGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
             GG RL  P  +I +  +V+A  ES    +C     + C   G   LT  L + L N  
Sbjct: 61  PGGGYRLAMPDSEIPLTRIVEAVNESISTTQCGGDPHLCCKGDGQQCLTHDLWEELGNRI 120

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV+ +
Sbjct: 121 AEFLGGITLGQLVQKQ 136


>gi|66044484|ref|YP_234325.1| transcription factor IscR [Pseudomonas syringae pv. syringae
          B728a]
 gi|71736670|ref|YP_273566.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487211|ref|ZP_05641252.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289626165|ref|ZP_06459119.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649071|ref|ZP_06480414.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677962|ref|ZP_06498852.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. syringae FF5]
 gi|298486011|ref|ZP_07004085.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|302185757|ref|ZP_07262430.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. syringae 642]
 gi|63255191|gb|AAY36287.1| Protein of unknown function UPF0074:Iron-sulphur cluster assembly
          transcription factor IscR [Pseudomonas syringae pv.
          syringae B728a]
 gi|71557223|gb|AAZ36434.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298159488|gb|EFI00535.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|320322933|gb|EFW79023.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329944|gb|EFW85932.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330869589|gb|EGH04298.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330874670|gb|EGH08819.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894481|gb|EGH27142.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. mori str. 301020]
 gi|330895877|gb|EGH28162.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330936997|gb|EGH41093.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950800|gb|EGH51060.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae Cit 7]
 gi|330969082|gb|EGH69148.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330975891|gb|EGH75957.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. aptata str. DSM 50252]
 gi|330985002|gb|EGH83105.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009174|gb|EGH89230.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 163

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  VV A  ES     C
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92


>gi|91976008|ref|YP_568667.1| hypothetical protein RPD_1529 [Rhodopseudomonas palustris BisB5]
 gi|91682464|gb|ABE38766.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
          palustris BisB5]
          Length = 154

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K T  G+  ++  A H D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1  MKLQKSTMCGLYAVLELAAHADQQISAGDIAKKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
           GG        ++T+LD++   E++   ++  AS
Sbjct: 61 GGGYTFSGNPKRVTLLDIIALFEDTAPASDLTAS 94


>gi|306838497|ref|ZP_07471336.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|306406418|gb|EFM62658.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
          Length = 199

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 58  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 117

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA++I I ++++A + +     C
Sbjct: 118 GGFCLAHPANEIAIGNIIRALDGALAPIAC 147


>gi|159901882|gb|ABX10616.1| transcriptional regulator [uncultured planctomycete 6N14]
          Length = 141

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ R  Y    ++  AI ND   P  I +I +   +   FL +IL+ L   G V+++R
Sbjct: 1  MVISARVHYACVAMLELAIQNDEGSPVAIREITDRHGVPGPFLVQILRSLRALGWVQSIR 60

Query: 59 GRRGGVRLCRPADQITILDVVKA 81
          G +GG RL      IT+LD+ +A
Sbjct: 61 GSQGGYRLSVDPATITLLDIAEA 83


>gi|117926820|ref|YP_867437.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610576|gb|ABK46031.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
           MC-1]
          Length = 141

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L++ TDYG  V+M+ A   +  +  S+IA+   + E  + K+L+ +V+A ++ +VRG 
Sbjct: 2   LRLSRMTDYGTLVMMHMAKAPERVHSASEIAQHTKLPEPSVRKVLKIMVRAELLCSVRGL 61

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKID-CPLVGSCGL 107
           +GG RL +   +I++  ++ A E  +  + +C    + D C    +C +
Sbjct: 62  KGGYRLAKLPLEISLEALITALEGTAVAITDCCDDEQTDHCEQFDACHM 110


>gi|163857090|ref|YP_001631388.1| hypothetical protein Bpet2778 [Bordetella petrii DSM 12804]
 gi|163260818|emb|CAP43120.1| unnamed protein product [Bordetella petrii]
          Length = 179

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN- 116
             GG  L R A  +T+ D++ A +E      C   H       G  G  +T  L   LN 
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATNCGGKHDCTSGKDGKSGKCMTHELWTTLNR 120

Query: 117 AFFDVLTQYSIECLV 131
              D L   S++ LV
Sbjct: 121 KMVDYLDSVSLQDLV 135


>gi|295702703|ref|YP_003595778.1| Rrf2 family transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294800362|gb|ADF37428.1| transcriptional regulator, Rrf2 family [Bacillus megaterium DSM
           319]
          Length = 143

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + + +P+    IA +   + + + +++  L KAG+V  V+  
Sbjct: 1   MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLV-GVKAG 59

Query: 61  RGGVRLCRPADQITILDV---VKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLR 112
            GG  L +  ++IT+LDV   V A EE     E F  H+   ++CP+  +    L  +L+
Sbjct: 60  AGGAYLLKDLEEITLLDVYRAVAAVEE----GELFQMHENPNVECPVGANIQSVLELILK 115

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           ++ +A   VL   +++ LV +
Sbjct: 116 RSQDAMEQVLADVTMKELVTD 136


>gi|255522661|ref|ZP_05389898.1| hypothetical protein LmonocFSL_15876 [Listeria monocytogenes FSL
           J1-175]
          Length = 114

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA+   +SE +L +++ PL  AGIV+++RG  GG  L    ++IT  D+++  E    + 
Sbjct: 5   IAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLV 64

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           E     +             +  +  NA  DVL Q ++  L+++ + 
Sbjct: 65  ESMEDEE--------AAQRELWTRMRNAVRDVLDQTTLADLLKHSTD 103


>gi|294497330|ref|YP_003561030.1| Rrf2 family transcriptional regulator [Bacillus megaterium QM
           B1551]
 gi|294347267|gb|ADE67596.1| transcriptional regulator, Rrf2 family [Bacillus megaterium QM
           B1551]
          Length = 143

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + + +P+    IA +   + + + +++  L KAG+V  V+  
Sbjct: 1   MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLV-GVKAG 59

Query: 61  RGGVRLCRPADQITILDV---VKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLR 112
            GG  L +  ++IT+LDV   V A EE     E F  H+   ++CP+  +    L  +L+
Sbjct: 60  AGGAYLLKDLEEITLLDVYRAVAAVEE----GELFQMHENPNVECPVGANIQSVLELILK 115

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           ++ +A   VL   +++ LV +
Sbjct: 116 RSQDAMEQVLADVTMKELVTD 136


>gi|162454023|ref|YP_001616390.1| rrf2 family protein [Sorangium cellulosum 'So ce 56']
 gi|161164605|emb|CAN95910.1| rrf2 family protein [Sorangium cellulosum 'So ce 56']
          Length = 148

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 27  ISQIAEACCISEL---------FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++Q  E+C    L         FL +IL  L +AG++E   GR GG RL RPA +I + +
Sbjct: 16  LAQADESCASDALSASINTNPAFLRRILARLSQAGLIEAREGRSGGYRLARPAKKIRLSE 75

Query: 78  VVKATEESFFVAECFASHKIDCPL 101
           V  A E    +A         CP+
Sbjct: 76  VYAAVEPEGAIAPSPCEPNARCPI 99


>gi|51102912|gb|AAT96061.1| rrf2 family protein [Pseudomonas viridiflava]
          Length = 163

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  VV A  ES     C
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRC 92


>gi|260888343|ref|ZP_05899606.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
 gi|330838337|ref|YP_004412917.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas
          sputigena ATCC 35185]
 gi|260861879|gb|EEX76379.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
 gi|329746101|gb|AEB99457.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas
          sputigena ATCC 35185]
          Length = 148

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  YG+  + + A     + P  I  I+E   IS+++L ++   L  A +V + +
Sbjct: 1  MKISAKGRYGLAAMAFLARIGQANSPTTILTISENLGISKIYLEQVFSLLKHARLVTSSK 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G +GG  L R A +IT  DV+ A E
Sbjct: 61 GSQGGYHLARAAQEITAWDVLAAIE 85


>gi|302339438|ref|YP_003804644.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636623|gb|ADK82050.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 145

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+Y      D   ++ +I+EA  +S+ +L +I++ L  +GI+++ RG
Sbjct: 1   MKFSTRTRYGLRFLIYLGSEGGDRYVQLGEISEAEKVSQKYLEQIVRLLKPSGILDSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG ++    D++ +  + +  E       C    +  C     C    +  +  +   
Sbjct: 61  VTGGYKIAVDPDKVRLDRLFELLEGDLAPINCLREDE-HCERASRCPTLPLWMELDDLVK 119

Query: 120 DVLTQYSIECLVRN 133
           + L + S+  L+RN
Sbjct: 120 NFLKERSLGDLIRN 133


>gi|116618835|ref|YP_819206.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097682|gb|ABJ62833.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 139

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           TK +D  I +L Y  I+       +QIA++   + + + +I+  L   G + +  GR   
Sbjct: 5   TKLSD-AIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGR-AD 62

Query: 64  VRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            +L RPAD I++LD+ +A EE  SF         KID     +C + S ++  L+ +++
Sbjct: 63  PKLARPADTISLLDIYRAVEEDTSFL--------KIDTKTNQNCNVGSHIQTTLDKYYN 113


>gi|299068911|emb|CBJ40152.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
           CMR15]
          Length = 148

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V +  G 
Sbjct: 6   MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG  L RPAD+IT+LDV +A E    +A  ++     C
Sbjct: 65  SGGSTLARPADRITLLDVFRAVESPVLIALPYSQPNPAC 103


>gi|170076761|ref|YP_001733399.1| rrf2 family protein (putative transcriptional regulator)
          [Synechococcus sp. PCC 7002]
 gi|169884430|gb|ACA98143.1| rrf2 family protein (putative transcriptional regulator)
          [Synechococcus sp. PCC 7002]
          Length = 147

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA+   +   +L K+L  + +AGI+ +VRG
Sbjct: 1  MKLTTRGHYSVKALLDISLQPGYGPTSVKAIAKRQNLPAPYLEKLLIEMRRAGILRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
           +GG +L    + I++  +++A  E+
Sbjct: 61 AQGGYQLLSKPEDISLGQILQAIGET 86


>gi|227818808|ref|YP_002822779.1| transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959063|gb|AAQ87488.1| RRF2 family protein [Sinorhizobium fredii NGR234]
 gi|227337807|gb|ACP22026.1| predicted transcriptional regulator [Sinorhizobium fredii NGR234]
          Length = 179

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 12/148 (8%)

Query: 2   HLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           H++   +Y +  L+Y   A     P     +AE   +   F+ K+   L K+GIV    G
Sbjct: 3   HVSAGVEYALHCLLYLIDAEELGQPASARDLAELQKVPAEFVAKLFTKLQKSGIVVAREG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
             GG  L RPA  IT LDV++A +    + EC         F        + G C + +V
Sbjct: 63  IGGGFALARPATDITALDVIEAVDGRKALFECKEIRAQCALFGDRTPVWAMDGVCSIHAV 122

Query: 111 LRKALNAFFDVLTQYSIECLVRNRSSIK 138
           + +A     +VL  +++  +   R++ K
Sbjct: 123 MIEAEKRTREVLAGHTLASIA-GRAAAK 149


>gi|84686207|ref|ZP_01014102.1| hypothetical protein 1099457000256_RB2654_08387 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665734|gb|EAQ12209.1| hypothetical protein RB2654_08387 [Rhodobacterales bacterium
           HTCC2654]
          Length = 144

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 6   RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  +H   +D P    +I      +   + + +  L  AGIV +V+G  G
Sbjct: 2   RTDNRLSRVLHALLHLERHDGPATSDEIGRMLNTNATVVRRTMGGLRDAGIVGSVKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G  L RP DQIT+L +  A  E    A   A     C L  +    + L KAL+ 
Sbjct: 62  GWTLARPLDQITMLTIYDALGEPSLFALGQAQDAPGCRLEQAA--NTALGKALDG 114


>gi|296876096|ref|ZP_06900150.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432807|gb|EFH18600.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 149

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +     S  +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  L + AD+I++LD+ +A E      + F  H    P
Sbjct: 61  T-GGAELAKAADKISLLDIYQAVECLGSTGQLFGFHDNPNP 100


>gi|284032632|ref|YP_003382563.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811925|gb|ADB33764.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida
          DSM 17836]
          Length = 159

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 1  MHLTKRTDYGIRVLMYCA---IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVE 55
          M ++ ++DY +R L+      + ND P+ +S  +++ A  I   FL  IL  L +AG++ 
Sbjct: 1  MRVSAKSDYALRALIEITQRWVAND-PSVVSAEELSRAQGIPHGFLQGILADLRRAGVLS 59

Query: 56 TVRGRRGGVRLCRPADQITILDVVKATE 83
          + RG+ GG +L    ++I++ DV++A +
Sbjct: 60 SQRGQSGGWKLAVDPNEISVADVMRAVD 87


>gi|162147274|ref|YP_001601735.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544320|ref|YP_002276549.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785851|emb|CAP55422.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531997|gb|ACI51934.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 149

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 13  VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +++  A H      +S   IAE   ++   +  +LQ L ++ ++E+VRG RGG RL RP 
Sbjct: 14  IMLDVAFHAGRSGTVSAADIAERAGLARRGIEPLLQTLSRSSLLESVRGPRGGYRLGRPR 73

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT----QYS 126
             IT+ D+V+       +A    S   D P VG+   T V+        D L+    + +
Sbjct: 74  RDITLADIVE-------IATADDSSSDDGP-VGAL-FTKVIEPCWQKLDDTLSTQCRKLT 124

Query: 127 IECLVRNRSS 136
           ++ LVR   S
Sbjct: 125 LDDLVRRAES 134


>gi|198284817|ref|YP_002221138.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218667768|ref|YP_002427503.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249338|gb|ACH84931.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218519981|gb|ACK80567.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 146

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K ++Y +R L+Y A   +  P     I++    S   + K+L+ L K GI+ +V+G
Sbjct: 1  MMLSKASEYALRSLIYLAAQPSGRPVLSRDISDYIGGSAPCVTKVLRCLAKRGILYSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          + GG  L   A+ + I+DV++ TE       C   H  DC
Sbjct: 61 KGGGYMLRPGAESLNIIDVIEITEGRPLEIRCILGH--DC 98


>gi|254467026|ref|ZP_05080437.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
          bacterium Y4I]
 gi|206687934|gb|EDZ48416.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
          bacterium Y4I]
          Length = 142

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  I++   IS  +L ++   L ++G+VE+VRG  GG RL +PA +I I+DV+ A +E+
Sbjct: 18 LGDISKRQDISLPYLEQLFVKLRRSGLVESVRGPGGGYRLAKPASEIRIVDVLSAVDET 76


>gi|149178219|ref|ZP_01856813.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
 gi|148843001|gb|EDL57370.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
          Length = 149

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 9   YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           Y +R +   A    DY  R  Q+++A  +   +L KI+  L + G++ + RG+ GG  L 
Sbjct: 16  YALRAMTCLAFRFPDYMTR-DQLSQAAEVPHAYLPKIMLELNRTGLIRSQRGQNGGYALI 74

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
               +I++LDV+K+ +  F      + H+ D     +      L + LN  F +L + S+
Sbjct: 75  PSPQEISLLDVIKSVKAGF--QRELSQHRPD-----TSNEVRQLDEHLNHTFSLL-ETSL 126

Query: 128 ECLVRNRSSIKKIFN 142
           E     ++S+  IFN
Sbjct: 127 E-----QTSLADIFN 136


>gi|254303299|ref|ZP_04970657.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323491|gb|EDK88741.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 140

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  ++ D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIIYYLTLNRD-KDIISSNEISAEEDIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCTIRHALKKIQDDL 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +   LV N +S++
Sbjct: 120 LDDFDKINFYDLVENNASLQ 139


>gi|171057733|ref|YP_001790082.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
           SP-6]
 gi|170775178|gb|ACB33317.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
           SP-6]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+    IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHTGPVALAAISARQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R A+ IT+ D++ A +E+     C           G C +T  L  +LNA  
Sbjct: 61  PGGGYSLGRKAEDITVADIIVAVDEAIDSTGCGGGENCMGDDTGRC-MTHDLWTSLNAKM 119

Query: 119 FDVLTQYSIECLVRNRSS 136
            + L   S+  LV+++ S
Sbjct: 120 LEYLHSISLRSLVQDQLS 137


>gi|154498777|ref|ZP_02037155.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
           29799]
 gi|150272167|gb|EDM99371.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
           29799]
          Length = 144

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI   D    +  +AE   IS+ +L +I+  L + G+V +VRG
Sbjct: 1   MKISTKGRYALRLMLDLAIQPGDSAVPLRDVAERQEISDKYLEQIVTQLARGGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  ++ T+ ++++  E +     C +     C     C    V ++  +A  
Sbjct: 61  AGGGYLLTRTPEEYTVGEILRQLEGNLAPVSCVSGGSC-CGRADRCVTLEVWQQIQDAVD 119

Query: 120 DVLTQYSIECLVR 132
            V+   ++  LV+
Sbjct: 120 GVVDNITLADLVK 132


>gi|316935429|ref|YP_004110411.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris DX-1]
 gi|315603143|gb|ADU45678.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris DX-1]
          Length = 154

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      ++T+LD++   E++    +  AS + +     S  L  VLR        
Sbjct: 61  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDEHEE----SRALHKVLRDIDEIAMT 116

Query: 121 VLTQYSIECLVR 132
            L   SI  L++
Sbjct: 117 TLRSVSITSLLK 128


>gi|303327292|ref|ZP_07357734.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863280|gb|EFL86212.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 181

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 19/104 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
            D P   S++A    ISE F+ KI++ L   GIV+++RG  GG  L R  D +++ D++ 
Sbjct: 22  EDMPASASELAVCTGISEKFVQKIMRLLQSGGIVKSIRGIAGGHVLARNPDDVSLADIIA 81

Query: 81  ATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNAFFDV 121
           A E             I  P V S   CG     R AL+A+ D 
Sbjct: 82  AVE-----------GGITLPGVNSAAPCG-----RVALDAWADA 109


>gi|295676942|ref|YP_003605466.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1002]
 gi|295436785|gb|ADG15955.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1002]
          Length = 176

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+++T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEEVTVADIIIAVDEPLDATQC 92


>gi|253754824|ref|YP_003027964.1| transcriptional regulator [Streptococcus suis BM407]
 gi|251817288|emb|CAZ55018.1| putative transcriptional regulator protein [Streptococcus suis
          BM407]
          Length = 139

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R      +L+  A+  +   + S  IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1  MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG RL +  DQIT+L V +A E      + FA H+
Sbjct: 61 I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHE 96


>gi|145595671|ref|YP_001159968.1| Rrf2 family transcriptional regulator [Salinispora tropica CNB-440]
 gi|145305008|gb|ABP55590.1| transcriptional regulator, BadM/Rrf2 family [Salinispora tropica
           CNB-440]
          Length = 200

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNR-----ISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R +  +  A       R       QIA A  I   FL  IL  L + G+
Sbjct: 45  MRLSARVDYALRAVAELASATGGVSTGRGRFVTADQIARAQEIPPKFLESILLQLRRGGV 104

Query: 54  VETVRGRRGGVRLCRPADQITILDVVK 80
           V+  RG  GG  L RPA +I++ +V++
Sbjct: 105 VQAQRGPEGGYWLARPAGEISLAEVIR 131


>gi|332528393|ref|ZP_08404387.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042156|gb|EGI78488.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 13/151 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  ++ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
             GG  L R A  +T+ D++ + +E     +C           G C +T  L  ALN   
Sbjct: 61  PGGGYTLARKAADVTVADIILSVDEPIDATQCGGKENCQGGDGGRC-MTHELWSALNTRM 119

Query: 118 --FFDVLT-------QYSIECLVRNRSSIKK 139
             F D +T       Q +   +V ++ +IK+
Sbjct: 120 VEFLDSVTLQKLVDEQLAKGLVVEDKPAIKR 150


>gi|306841295|ref|ZP_07474006.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306288697|gb|EFM60028.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
          Length = 166

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA++I I ++++A + +     C
Sbjct: 85  GGFCLAHPANEIAIGNIIRALDGALAPIAC 114


>gi|113868325|ref|YP_726814.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113527101|emb|CAJ93446.1| Putative Transcriptional regulator [Ralstonia eutropha H16]
          Length = 136

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P   S IA +   +   + +++  L +AG+V T  G  GG  L RPA  IT+LDV +  E
Sbjct: 15  PVPSSLIAASVGTNPALIRRLVGQLAEAGLVATTMGSTGGATLARPAASITLLDVFRVVE 74

Query: 84  ESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            +  +    ++    CP VG   +  L  V  +A  A  D L   +I  ++ +
Sbjct: 75  TTALITLHQSAPNPACP-VGREITGALRKVADRAQAAMDDTLAGATIASMLAD 126


>gi|313672582|ref|YP_004050693.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939338|gb|ADR18530.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 137

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T ++ Y IR +  M     +  P  I +I++   IS  +L ++   L K  IV++VR
Sbjct: 1   MKITTKSRYAIRAIFAMIALGGDKEPVSIKKISDFEDISIKYLEQLFTKLRKNKIVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKAL 115
           G  GG    +P ++IT+ D+V + +      +C  S+   C     C +  V   L+K +
Sbjct: 61  GTLGGYIFAKPLNEITLRDIVYSMDGPIKPVDCIDSN--GCEKSSVCAVNWVWFGLKKDI 118

Query: 116 NAFFDVLT 123
           + + + +T
Sbjct: 119 DNYLERIT 126


>gi|322831758|ref|YP_004211785.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166959|gb|ADW72658.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 164

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + +  I +  V+ A +ES     C
Sbjct: 61 PGGGYLLGKDSGDIAVGAVITAVDESVDATRC 92


>gi|256042842|ref|ZP_05445789.1| RfF2 family protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 100

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA +I I ++++A + +     C
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91


>gi|254449219|ref|ZP_05062668.1| iron-sulfur cluster assembly transcription factor IscR [gamma
          proteobacterium HTCC5015]
 gi|198261196|gb|EDY85492.1| iron-sulfur cluster assembly transcription factor IscR [gamma
          proteobacterium HTCC5015]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ IAE   IS  +L ++   L K G+V + RG
Sbjct: 1  MKLTTKGRYAVTAMLDLALHCEQGPVALADIAERQAISLSYLEQLFGRLRKRGLVSSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L   A  I++  V+ A +ES     C
Sbjct: 61 PGGGYALNAEAGAISVSAVIDAVDESVDATSC 92


>gi|311031536|ref|ZP_07709626.1| transcription repressor [Bacillus sp. m3-13]
          Length = 138

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A +  + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKNVGEGPLSLKTIAQTHDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
            GG  L    ++IT  D+++  E      E     +
Sbjct: 61 AYGGYILADEPEKITAGDIIRVLEGPISPVEVIEDEE 97


>gi|167462502|ref|ZP_02327591.1| rrf2 family protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 142

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   A++++       +A +   + + + +I+  L KAG+V+ VR  
Sbjct: 1   MKISSRFSVGVHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
            GG  L +  D+IT+LD+ KA  +     E F  H+    +CP+  +    L  VL +A 
Sbjct: 60  TGGAYLLKSLDEITLLDIYKAV-DVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQ 118

Query: 116 NAFFDVLTQYSIECLVRNRS 135
            A   VL   +++ LV + S
Sbjct: 119 EAMEQVLKDITMDELVTSLS 138


>gi|209963829|ref|YP_002296744.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209957295|gb|ACI97931.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 162

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+K TDY + VL   A  +D P +  + +AE   +    + K+L+ L + GI+ + RG
Sbjct: 2   LRLSKLTDYAVVVLTAMA-RSDAPVHTAASLAERTGLPVPTVQKLLKQLARGGILASQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
             GG  L R    +T+ ++++A +    + +C    +      G+CG+ S+
Sbjct: 61  AAGGYALLREDTDVTVAEIIEAIDGPIALTDCVDGAE------GACGVQSL 105


>gi|307720665|ref|YP_003891805.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978758|gb|ADN08793.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           autotrophica DSM 16294]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +   + P     ++    IS+ FL KILQ L KA I+ + +G 
Sbjct: 1   MLITRASEYAILSLILLS-KAESPMDSDTLSRELSISKSFLAKILQSLAKAQILNSYKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRK 113
            GG  L +    I +L+V    E ++  V EC  S + DCP     +C +   L K
Sbjct: 60  NGGFALKKEPQDINMLEVASCVEGKAPAVFECAPSLE-DCPSEKASTCSIWPFLHK 114


>gi|329114382|ref|ZP_08243144.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum
          DM001]
 gi|326696458|gb|EGE48137.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum
          DM001]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 13 VLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +++  A H      +S   IAE   ++   +  +LQ L ++G++E++RG RGG RL RP 
Sbjct: 14 IMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLGRPR 73

Query: 71 DQITILDVVKA 81
            I ++D+++A
Sbjct: 74 RDIALVDIIEA 84


>gi|291551332|emb|CBL27594.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY IR++ Y A      +  S++++   +   ++ KI + L +AGI++   G 
Sbjct: 1  MQLTSTTDYAIRIVCYLAAQRQMIS-TSELSQELSVPSNYIPKITKKLKQAGIIKACEGT 59

Query: 61 RGGVRLCRPADQITILDVV 79
           GG  L +  + I++++++
Sbjct: 60 NGGYMLAKQPENISLMEII 78


>gi|258619946|ref|ZP_05714986.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
 gi|258627177|ref|ZP_05721965.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
 gi|262165059|ref|ZP_06032796.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
 gi|262172182|ref|ZP_06039860.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
 gi|258580479|gb|EEW05440.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
 gi|258587679|gb|EEW12388.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
 gi|261893258|gb|EEY39244.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
 gi|262024775|gb|EEY43443.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
          Length = 160

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLV 131
           I+I  V+ A +ES    +C    K DC     C   ++ R   +   D L   ++ E +V
Sbjct: 61  ISIGTVIAAVDESVDATKCNG--KGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118

Query: 132 RNR 134
            N 
Sbjct: 119 DNE 121


>gi|150025901|ref|YP_001296727.1| hypothetical protein FP1858 [Flavobacterium psychrophilum JIP02/86]
 gi|149772442|emb|CAL43924.1| Protein of unknown function YjeB [Flavobacterium psychrophilum
           JIP02/86]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   TD+ +R+LMY     +     + ++++   IS   L K++Q L K   + T RG
Sbjct: 1   MKLNHFTDFSMRILMYLNHQKEGKTTSLDELSDQFKISRNHLIKVVQFLSKNQYIHTKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG+ +      I + +++   E+ +  +  C +   +  P   +C L  + +    +F
Sbjct: 61  KNGGIHISNETKTIPLGNLINILEQDNSPIINCDSKPCVLAP--HNCKLKYIFQLGYQSF 118

Query: 119 FDVLTQYSIECLV 131
            + L Q+++  L 
Sbjct: 119 INTLNQFTLSDLT 131


>gi|110634404|ref|YP_674612.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285388|gb|ABG63447.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 169

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 17/136 (12%)

Query: 10  GIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           G+   ++CA+           P   S +AE   +S  +L K LQ L  A I+E+V G  G
Sbjct: 6   GVEAAIHCAVVLAQLEGEGTLPG--SALAELYGLSPSYLLKHLQALAAAKILESVPGPYG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-------LVGSCGLTSVLRKAL 115
           G RL +  ++I++LD+V A E       C A  +   P           CG+ + + +A 
Sbjct: 64  GYRLAKAPERISLLDIVLAVEGPKPAFRC-AEIRQRGPGALEPSAYAKPCGINAAMLRAE 122

Query: 116 NAFFDVLTQYSIECLV 131
            A+  VL +  +  +V
Sbjct: 123 RAWRAVLAETKLSEIV 138


>gi|261212153|ref|ZP_05926439.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
 gi|260838761|gb|EEX65412.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
          Length = 160

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI-ECLV 131
           I+I  V+ A +ES    +C    K DC     C   ++ R   +   D L   ++ E +V
Sbjct: 61  ISIGTVIAAVDESVDATKCNG--KGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118

Query: 132 RN 133
            N
Sbjct: 119 DN 120


>gi|254720792|ref|ZP_05182603.1| RfF2 family protein [Brucella sp. 83/13]
 gi|265985850|ref|ZP_06098585.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306845400|ref|ZP_07477974.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|264664442|gb|EEZ34703.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306274143|gb|EFM55959.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
          Length = 143

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA++I I ++++A + +     C
Sbjct: 62 GGFCLAHPANEIAIGNIIRALDGALAPIAC 91


>gi|237747468|ref|ZP_04577948.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229378819|gb|EEO28910.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 155

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A H  + P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1  MRLTTKGRFAVMAMIDLARHQKNGPVSLAGISERQDISVAYLEQLFSKLRRGNLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L   A  ITI D+V A +E   V  C
Sbjct: 61 PGGGYLLSGNAGDITIADIVFAVDEPLDVTRC 92


>gi|291523912|emb|CBK89499.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
          DSM 17629]
 gi|291528627|emb|CBK94213.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
          M104/1]
          Length = 141

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +A +   + + + KILQ L  AG++E  RG  GGV + RP +QIT LDV KA E
Sbjct: 30 MAASIGTNPVIIRKILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 82


>gi|15895504|ref|NP_348853.1| hypothetical protein CA_C2236 [Clostridium acetobutylicum ATCC 824]
 gi|15025236|gb|AAK80193.1|AE007724_2 Uncharacterized conserved protein of YjeB/RRF2 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325509651|gb|ADZ21287.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 147

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG++ ++  A++  ND    +  I++   ISE +L +I   L K G+V+  +
Sbjct: 1   MKISTKGRYGLKAMIDLAVNSVNDIVT-LKSISQREKISEGYLEQIFSALRKKGLVKGRK 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRK 113
           G +GG  L +   +IT+ D++ A E    V      E     K+D  + G     +V  K
Sbjct: 60  GSQGGYVLGKSMKEITVADILNALEGDLSVVERDENEILKEDKLDNFIRG-----NVWTK 114

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
              A  +V+   ++E LV + +++
Sbjct: 115 INMAIEEVVVSITLEDLVMDYNNV 138


>gi|288906317|ref|YP_003431539.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306832374|ref|ZP_07465527.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325979331|ref|YP_004289047.1| BadM/Rrf2 family transcriptional regulator [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733043|emb|CBI14624.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304425414|gb|EFM28533.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325179259|emb|CBZ49303.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 133

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ R  Y IRV++    +N+ +   +  IA+   IS+ +L  I++ +V   ++    GR 
Sbjct: 2   ISTRGRYAIRVMIDLVENNNGHYIPLKDIAKRQEISKKYLEIIVKEMVAGELLIGASGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R  ++ T+ +++   E +     C A    DCP    C    +  +  N   D 
Sbjct: 62  GGYKLRRKPEEYTVGEILDLMEGTLSSVACLADKSFDCPRKDKCKTLPMWTEYDNLVHDF 121

Query: 122 LTQYSIECLVRN 133
               +I  LV N
Sbjct: 122 FYGKTILDLVNN 133


>gi|86605142|ref|YP_473905.1| transcriptional regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553684|gb|ABC98642.1| putative transcriptional regulator [Synechococcus sp. JA-3-3Ab]
          Length = 150

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT R  Y IR L+  A+     + +  IAE   I   +L K+L  L +AG+V + RG 
Sbjct: 1  MRLTTRATYSIRALLDLAMLGQVAS-VRAIAERQQIPAPYLEKLLIELRQAGLVCSQRGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESF 86
          +GG RL R   +I I  ++ A  ES 
Sbjct: 60 QGGYRLARAPRRIPISAILAAVGESL 85


>gi|292490815|ref|YP_003526254.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
 gi|291579410|gb|ADE13867.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDYGI ++   A      +  + ++    +    + KIL+ L +A ++ + RG 
Sbjct: 2   LRMSKMTDYGIVLMTRLAADPKGQHAAADLSAQVEMPLPTVSKILKQLARAQLLVSSRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
           +GG  L RP + I++ +++   E    + EC ++        G CG  S
Sbjct: 62  QGGYSLARPPETISVAEIITTLEGPIGLTECIST-------PGECGQES 103


>gi|325473526|gb|EGC76719.1| hypothetical protein HMPREF9353_02145 [Treponema denticola F0402]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+ +  ++ + + KIL  L KAG+VET  G  GG  L + AD+IT+LDV  A  E     
Sbjct: 31  ISASTGVNAVIIRKILLQLQKAGLVETAAGV-GGSHLAQAADKITLLDVYNAINEGEEER 89

Query: 90  ECFASH---KIDCPLVGS---CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           + F  H      CP VGS     L + L  A  A  D L + +I  L ++
Sbjct: 90  DIFNFHPKPNSKCP-VGSKIHLVLDTKLDDAQKAMKDSLNKTTIADLSKD 138


>gi|121594494|ref|YP_986390.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|222110831|ref|YP_002553095.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|120606574|gb|ABM42314.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
 gi|221730275|gb|ACM33095.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
           TPSY]
          Length = 178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  +LN 
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116

Query: 118 ----FFDVLT 123
               F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|146308527|ref|YP_001188992.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           ymp]
 gi|145576728|gb|ABP86260.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas mendocina
           ymp]
          Length = 165

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES     C    + DC    +C
Sbjct: 61  PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104


>gi|88813311|ref|ZP_01128550.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
 gi|88789483|gb|EAR20611.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + L+ ++ Y +  LM+ AIHN   P  +++I+    IS  ++ +I+  L +AG+V+   G
Sbjct: 2  IRLSTKSRYAVSALMHLAIHNQAGPVPLAEISVCQGISMSYVEQIVGRLRRAGLVQGTPG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL R  + I++ +V+   E+ 
Sbjct: 62 PGGGYRLGRSPEHISVGEVIALMEDG 87


>gi|296282946|ref|ZP_06860944.1| transcriptional regulator [Citromicrobium bathyomarinum JL354]
          Length = 140

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+   DY I V+M          R+S   +A+   I      KI+  L  AG++ + R
Sbjct: 1  MRLSNLADYAI-VIMAATARKCGGGRVSSADLAQETGIPVPTAQKIVSKLSAAGLLRSTR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          G  GG++L RPA  I++ D+V+A E    +  C 
Sbjct: 60 GAGGGLQLGRPAAAISMADIVEAIEGPIALVSCI 93


>gi|307324656|ref|ZP_07603862.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889538|gb|EFN20518.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          G+   ++C +     + P   +++AE   +S  +L K LQ L +AG+V +V+G+ GG  L
Sbjct: 4  GVEWALHCCVVLTSVEEPVPATKLAEFHDVSASYLAKQLQALSRAGLVRSVQGKAGGYIL 63

Query: 67 CRPADQITILDVVKATE 83
           R    IT+LDVV+A +
Sbjct: 64 TREPASITLLDVVEAVD 80


>gi|265989282|ref|ZP_06101839.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|262999902|gb|EEZ12641.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 123

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIAC 114


>gi|298491131|ref|YP_003721308.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae'
          0708]
 gi|298233049|gb|ADI64185.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae'
          0708]
          Length = 147

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1  MKLTTRGHYSVKALLDLSLQPKYGPVSVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
            GG +L     QI+I  +++A  E+ 
Sbjct: 61 SIGGYQLAIKPAQISIGQILEAVGENI 87


>gi|317501323|ref|ZP_07959526.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088357|ref|ZP_08337276.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316897287|gb|EFV19355.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408601|gb|EGG88067.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 144

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          KILQ L  AG++E  RG  GGV + RP +QIT LDV KA E
Sbjct: 43 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 82


>gi|159038921|ref|YP_001538174.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157917756|gb|ABV99183.1| transcriptional regulator, BadM/Rrf2 family [Salinispora
          arenicola CNS-205]
          Length = 156

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 1  MHLTKRTDYGIRVLMYCA-----IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGI 53
          M L+ R DY +R +   A     +       ++  QIA A  I   FL  IL  L + G+
Sbjct: 1  MRLSARVDYALRAVAELASVTSGVSTGRGRTVTADQIARAQEIPPKFLESILLQLRRGGV 60

Query: 54 VETVRGRRGGVRLCRPADQITILDVVK 80
          V   RG  GG  L RPA++I++ +V++
Sbjct: 61 VRAQRGPEGGYWLARPAEEISLAEVIR 87


>gi|39933740|ref|NP_946016.1| putative transcriptional regulator BadM [Rhodopseudomonas palustris
           CGA009]
 gi|6136594|sp|O07465|BADM_RHOPA RecName: Full=Putative HTH-type transcriptional regulator BadM
 gi|2190585|gb|AAC13361.1| unknown [Rhodopseudomonas palustris]
 gi|39647587|emb|CAE26107.1| putative transcriptional regulator, badM [Rhodopseudomonas
           palustris CGA009]
          Length = 156

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 3   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      ++T+LD++   E++    +  AS   +     S  L  VLR        
Sbjct: 63  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDHEE----SRALHKVLRDIDEIAMT 118

Query: 121 VLTQYSIECLVR 132
            L   SI  L++
Sbjct: 119 TLRSVSITSLLK 130


>gi|330504691|ref|YP_004381560.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918977|gb|AEB59808.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 165

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES     C    + DC    +C
Sbjct: 61  PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104


>gi|87303358|ref|ZP_01086146.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87282006|gb|EAQ73968.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 146

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L +R    I+ L+  A+  +       +A +  I E  L ++L  L +A +VE  RGR G
Sbjct: 2  LKRRGLQAIQALLELALEPESWRSGPDLAASLAIPEPMLEQVLLQLRRAKLVEARRGRHG 61

Query: 63 GVRLCRPADQITILDVVKATE 83
          G RL R A  I +L+V++A E
Sbjct: 62 GYRLQRTAAAIPLLEVLQAVE 82


>gi|332526731|ref|ZP_08402833.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111134|gb|EGJ11166.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRSHSGPVALAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+ D++ A +E      C           G C    +     N   
Sbjct: 61  PGGGYSLGRGADEITVADIIVAVDEPIDATGCGGKENCHGDDGGRCMTHDLWASLNNKMI 120

Query: 120 DVLTQYSIECLV 131
           + L   S++ LV
Sbjct: 121 EYLDSISLKKLV 132


>gi|192289160|ref|YP_001989765.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris TIE-1]
 gi|192282909|gb|ACE99289.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris TIE-1]
          Length = 156

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 3   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      ++T+LD++   E++    +  AS   +     S  L  VLR        
Sbjct: 63  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDHEE----SRALHKVLRDIDEIAMT 118

Query: 121 VLTQYSIECLVR 132
            L   SI  L++
Sbjct: 119 TLRSVSITSLLK 130


>gi|163796150|ref|ZP_02190112.1| rrf2 family protein [alpha proteobacterium BAL199]
 gi|159178609|gb|EDP63149.1| rrf2 family protein [alpha proteobacterium BAL199]
          Length = 167

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L + TDY I VL   A         + +A+A  +    + K+L+ +    ++   RG 
Sbjct: 13  LRLNRMTDYAIVVLGQMAHEAGRVRTAAALADATGVPVPTVSKLLKQMAAVSLISAHRGA 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNA 117
           +GG  L RPA  +T+ ++++A E    +  C    +  C +  SC   G  + + +A+ A
Sbjct: 73  KGGYALDRPAAAVTVTEIIQALEGPIALTACVDGAEECCEVEHSCPMRGNWNRVNRAIRA 132

Query: 118 FFDVLT 123
             D +T
Sbjct: 133 ALDGVT 138


>gi|319779386|ref|YP_004130299.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
 gi|317109410|gb|ADU92156.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
          Length = 178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  +  P  +S I+    IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRSHSGPVTLSAISSRQNISLSYLEQLFSKLRRHELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV------GSCGLTSVLRK 113
             GG  L R A  IT+ D+V A +E      C   +K+ C         G C +T  L  
Sbjct: 61  PGGGYTLARNAKDITVADIVFAVDEPLDATGC--GNKLPCNNGRDGRDHGHC-MTHDLWS 117

Query: 114 ALNAFF-DVLTQYSIECLV 131
           +LNA   D L   S++ LV
Sbjct: 118 SLNAHMVDYLDSVSLQDLV 136


>gi|317132029|ref|YP_004091343.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
 gi|315470008|gb|ADU26612.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
          Length = 135

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +R++   A      +    ++E   ++  F  KI + L +AGIV + +G 
Sbjct: 1   MRITQEADYAVRIIDCLATAGTRMD-ARTVSEKTGVTLRFTLKIFRKLGQAGIVRSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102
           +GG  L R  D+I +  V++A +    +  C  +  + C L+
Sbjct: 60  QGGYELARDPDEINLRQVIEAVDGPININRCM-TGSLPCALL 100


>gi|83814365|ref|YP_444885.1| rrf2 family protein (putative transcriptional regulator)
           [Salinibacter ruber DSM 13855]
 gi|83755759|gb|ABC43872.1| rrf2 family protein (putative transcriptional regulator)
           [Salinibacter ruber DSM 13855]
          Length = 215

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAI---------HNDYPNR----ISQIAEACCISELFLFKILQP 47
           M L+K  +YG+R ++Y             +  P R    I  I++   I   FL K+ Q 
Sbjct: 54  MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 113

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           L  AG++ + RG  GGV L R  D I++ ++V A + +    EC
Sbjct: 114 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEEC 157


>gi|56963162|ref|YP_174890.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909402|dbj|BAD63929.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 148

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y ++ L++ +         ++IAE  C       ++L  LVKAGIVE   GR GG  L R
Sbjct: 17  YALQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRR 76

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVL 122
             + I+  DV +A +    V +   +  +D    G          T+V+ ++      VL
Sbjct: 77  KPEDISFADVYRAIQ----VVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVL 132

Query: 123 TQYSIECLVRN 133
            +++I  L++ 
Sbjct: 133 ERHTIADLIKK 143


>gi|322436026|ref|YP_004218238.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
 gi|321163753|gb|ADW69458.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
          Length = 124

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 13/133 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +RVL   A   D  +  + IAEA   S + + +I   L KAG +E  +G 
Sbjct: 1   MAQSGRFGLSVRVLGVLAAEPDAMHTSAAIAEAIGSSPVMVRRIFSALHKAGFIEQKKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL   A  I + D+  A E  + ++             G   L + ++K   A  +
Sbjct: 61  AGGARLKHSAKSIGLGDLFVAIEPDWLMS-------------GEKALDAAMKKVRTAAVE 107

Query: 121 VLTQYSIECLVRN 133
            + + SI  + + 
Sbjct: 108 AMNETSIAAVGKK 120


>gi|319762894|ref|YP_004126831.1| iron-sulfur cluster assembly transcription factor iscr
           [Alicycliphilus denitrificans BC]
 gi|330824973|ref|YP_004388276.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117455|gb|ADU99943.1| iron-sulfur cluster assembly transcription factor IscR
           [Alicycliphilus denitrificans BC]
 gi|329310345|gb|AEB84760.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRK 113
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G      L + L +
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHDLWATLNQ 116

Query: 114 ALNAFFDVLT 123
            +  F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|260425936|ref|ZP_05779915.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp.
          SE45]
 gi|260420428|gb|EEX13679.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp.
          SE45]
          Length = 153

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+  D     +  I++   +S  +L ++   L +AG+V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIAMQPDGDLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL RPA +I ++D++ A +E+
Sbjct: 61 PGGGYRLARPASEIRVVDILAAVDET 86


>gi|256389825|ref|YP_003111389.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Catenulispora acidiphila DSM 44928]
 gi|256356051|gb|ACU69548.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
          acidiphila DSM 44928]
          Length = 155

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 1  MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVE 55
          M L   T++    +++CA  +    P   +  A+     +L   +L K LQ L +AGI+ 
Sbjct: 1  MKLPTSTEW----VLHCAATLAQLRPAETASAAQLAAYYDLPAPYLAKQLQALTRAGILS 56

Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             G RGG RL R A  IT+L +V+A + +    EC
Sbjct: 57 ATTGPRGGFRLARAAKDITMLQIVEAVDGAAAPYEC 92


>gi|294782303|ref|ZP_06747629.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
 gi|294480944|gb|EFG28719.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
          Length = 140

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDEL 119

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D   + +   LV   + +
Sbjct: 120 LDDFDKINFHDLVEENTGL 138


>gi|289548069|ref|YP_003473057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Thermocrinis albus DSM 14484]
 gi|289181686|gb|ADC88930.1| transcriptional regulator, BadM/Rrf2 family [Thermocrinis albus
          DSM 14484]
          Length = 143

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           ++++   I   FL KI   LV+  I+++ +G  GG     P ++ITILDV+KA +E + 
Sbjct: 28 EEVSQVQNIPRPFLSKIFHKLVRERILKSYKGPTGGFTFAIPPEEITILDVIKALDEDYK 87

Query: 88 VAEC 91
          +  C
Sbjct: 88 LDYC 91


>gi|237800030|ref|ZP_04588491.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022885|gb|EGI02942.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  VV A  ES     C
Sbjct: 61 PGGGYQLSRDMKVIQVAQVVDAVNESVDATRC 92


>gi|157693884|ref|YP_001488346.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682642|gb|ABV63786.1| Rrf2 family transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 142

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++          IA +   + + + +I+  L KAG++ T  G+
Sbjct: 1   MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE-----ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
            GG +L R  D+IT+LDV KA E     E F + E   S   DCP+  +    L  +L +
Sbjct: 61  -GGSQLNRSEDEITLLDVYKAVEVVDEGELFQIHE---SPNPDCPIGANIQAVLELILCR 116

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A +A   VL +  +  L +
Sbjct: 117 AQSAMEQVLAEIKLSELTQ 135


>gi|154254085|ref|YP_001414909.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154158035|gb|ABS65252.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           + L+K+T   +  ++  AI N  P+ +   +I +   I + +L +++Q LV AGI++ VR
Sbjct: 2   LRLSKKTWLALEAVVDVAI-NARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVR 60

Query: 59  GRRGGVRLCRPADQITILDVVK------ATEESFFVAECFASHKIDCPL 101
           G RGG  L R   +I + +VV+      A++E    A      ++  PL
Sbjct: 61  GPRGGYTLARERRRIPVGEVVRVVGAMEASDEPTATAPSELGERVIAPL 109


>gi|111225126|ref|YP_715920.1| RRF2 family protein [Frankia alni ACN14a]
 gi|111152658|emb|CAJ64399.1| RRF2 family protein [Frankia alni ACN14a]
          Length = 135

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          FL  IL  L +AG+V++ RG  GG +L RPADQIT+  V++ T+
Sbjct: 24 FLENILTDLRRAGLVQSRRGADGGYQLGRPADQITVATVIRVTD 67


>gi|296115596|ref|ZP_06834223.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
 gi|295977845|gb|EFG84596.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
          Length = 106

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCP 100
           +  L +AG+V + RG  GG RL RPAD+I   D+++ T+    +  C    F     DC 
Sbjct: 1   MSDLRRAGLVTSQRGSGGGYRLARPADRIMFADIIRVTDGPISMLPCVSRNFYEQCEDCS 60

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSI 127
               C L  +  +   A  D+L   S+
Sbjct: 61  NEEICALRKIFAEVRTAVADILDHRSL 87


>gi|146276848|ref|YP_001167007.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555089|gb|ABP69702.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 189

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A  +    R  +I +    SE    FL  IL  +  AG + ++RG
Sbjct: 25  ITQKMKYALKALMVLAEEHSGEQRALRIEDIAARSETPKRFLEHILLDIRNAGYIASIRG 84

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   QI + D+++  +       C +        DC    SC +  V  +  
Sbjct: 85  RSGGYLLIKEPAQIPLSDLLRMIDGPIAPLPCLSRRSYQRCDDCTDETSCRIRKVFAEIF 144

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LVR  ++ ++I  A
Sbjct: 145 WSYLLLIESLTLADLVRTPAASEQILAA 172


>gi|237740621|ref|ZP_04571102.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422638|gb|EEO37685.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 140

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y ++++ Y  +H D  + IS  +I+    I  LF  +I++ L KAG+V+  R
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRD-KDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  +  
Sbjct: 60  GAKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDEL 119

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D   + +   LV   + +
Sbjct: 120 LDDFDKINFHDLVEKNTGL 138


>gi|332295070|ref|YP_004436993.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
           narugense DSM 14796]
 gi|332178173|gb|AEE13862.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
           narugense DSM 14796]
          Length = 141

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +T YG+R L   A +   Y     Q+A+   IS  +L ++L  L   GIVE+ +G  
Sbjct: 4   LSTKTRYGLRALCQLAQVKKGYTIPAHQLAKDQEISLSYLEQVLNVLKHHGIVESFKGPG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L     +I + DV++  E    + +C A     C     C   ++ +K  N     
Sbjct: 64  GGYKLNVDPKKIILKDVIEILEGPVLITDCSADPS-KCHRAEDCLTRALWQKIGNQVNSF 122

Query: 122 LTQYSIECLVR 132
           L + ++  LV+
Sbjct: 123 LGKITLNDLVK 133


>gi|256424752|ref|YP_003125405.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
           DSM 2588]
 gi|256039660|gb|ACU63204.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
           DSM 2588]
          Length = 144

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR +++ A  +   ++I    IA+     E F+ KILQ L + G+V++++G 
Sbjct: 2   FSKTCEYAIRAMIFIAQKSKDGSKIGIRDIAKGIDSPEYFIAKILQELGRKGVVQSMKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101
            GG  L   A + ++  +VKA +     + C       S K  CPL
Sbjct: 62  TGGFYLDNSARKTSLATIVKAVDGDNIFSGCGLGLKQCSDKHPCPL 107


>gi|312137813|ref|YP_004005149.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887152|emb|CBH46461.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          MH++ R D  +R L+  A  +     +   ++ +  ++  FL  +L  L + G+V++ RG
Sbjct: 1  MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL RPA  +TI DV++  E
Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVE 84


>gi|153811519|ref|ZP_01964187.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
 gi|149832260|gb|EDM87345.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          KILQ L  AG++E  RG  GGV + RP +QIT LDV KA E
Sbjct: 35 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 74


>gi|153814767|ref|ZP_01967435.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC
          27756]
 gi|145847798|gb|EDK24716.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC
          27756]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          KILQ L  AG++E  RG  GGV + RP +QIT LDV KA E
Sbjct: 35 KILQQLKAAGLIEVARGT-GGVTITRPLEQITFLDVYKAVE 74


>gi|114569861|ref|YP_756541.1| BadM/Rrf2 family transcriptional regulator [Maricaulis maris
          MCS10]
 gi|114340323|gb|ABI65603.1| transcriptional regulator, BadM/Rrf2 family [Maricaulis maris
          MCS10]
          Length = 158

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  +S IA    IS  +L ++   L +A IV +VRG  GG RL R A +I I D++ A +
Sbjct: 25 PVTLSDIASRQSISLSYLEQLFAKLRRADIVSSVRGPGGGYRLSRTASEIRISDIILAVD 84

Query: 84 ESFFVAEC 91
          E      C
Sbjct: 85 EPLRATRC 92


>gi|90021696|ref|YP_527523.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89951296|gb|ABD81311.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
           degradans 2-40]
          Length = 138

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L + A  +D P   +QIA+    + + + + +  L + G VE+ +GR GG  + RP 
Sbjct: 11  LHILAHLAT-SDEPVTSTQIAKFQSTNPVVVRRTMGLLREHGYVESTKGRNGGWAISRPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
             IT+LD+ +A  ES             CP+  S
Sbjct: 70  SDITLLDIHRAFGESSLFTIGLTDEHAHCPIEKS 103


>gi|170767352|ref|ZP_02901805.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia albertii TW07627]
 gi|170123686|gb|EDS92617.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia albertii TW07627]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|327481765|gb|AEA85075.1| iron-sulfur cluster assembly transcription factor IscR
          [Pseudomonas stutzeri DSM 4166]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R    I +  V+ A  ES     C
Sbjct: 61 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRC 92


>gi|325676084|ref|ZP_08155766.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|325553124|gb|EGD22804.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          MH++ R D  +R L+  A  +     +   ++ +  ++  FL  +L  L + G+V++ RG
Sbjct: 1  MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL RPA  +TI DV++  E
Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVE 84


>gi|255533630|ref|YP_003094002.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
           2366]
 gi|255346614|gb|ACU05940.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
           2366]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    + + P  +I ++AE   I   FL +IL  +  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVALGKNRENPPMQIVRLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116
           GG  L +  ++I + D+++ T+    +  C AS K      +C    +CG+        +
Sbjct: 62  GGYSLNKEPNEIYLADILRITDGPIAMVPC-ASLKFYRKCDECHDEVTCGIRKTFIDVRD 120

Query: 117 AFFDVLTQYSI 127
           A   VL Q +I
Sbjct: 121 ATLKVLAQTTI 131


>gi|255035951|ref|YP_003086572.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254948707|gb|ACT93407.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR + Y A  ++   ++   +IA      E FL KILQ L K G+V + +G 
Sbjct: 4   FSKTCEYAIRAVFYIAQKSEEGQKVGIREIALHINSPEPFLAKILQKLSKDGLVLSSKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q ++ D+V+A E       C       C     C L +  +K  N    
Sbjct: 64  HGGFYLDPGGLQRSLADIVQAIEGDSIFNGCGMGLSY-CSQANPCPLHNDFKKIRNQIVI 122

Query: 121 VLTQYSI----ECLVRNRSSIKK 139
           +L   SI    E L++ + ++ K
Sbjct: 123 MLRNTSIGKFNEGLIQGQLTLNK 145


>gi|326387606|ref|ZP_08209212.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207652|gb|EGD58463.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 150

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A        R+  IAEA  I   FL  IL  + + GIV + RGR 
Sbjct: 2   LSQKTRYTIRALQHLADAFGQGSVRLDAIAEAQNIPRKFLTVILSEMAREGIVISQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSC---GLTSVLRKA 114
           GG  L  P   I   D+++    S  +  C +  +H+   +C     C   GL   LR  
Sbjct: 62  GGYELALPPVDIRYGDIIRLCRGSLALVPCASRNAHETCANCLPEEECRLRGLMLQLRDE 121

Query: 115 LNAFFDVLT 123
             A  D +T
Sbjct: 122 TAAILDRIT 130


>gi|322508566|gb|ADX04020.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 141

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           F +   D    G C + +V+ +A  A  D L  +++
Sbjct: 61  FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 96


>gi|311694378|gb|ADP97251.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H D  P  ++ I+    IS  +L ++   L +  +V ++RG  GG RL RPA  
Sbjct: 1   MLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSIRGPGGGYRLSRPAAD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + I +VV A  ES     C   +K DC     C    +     +     L++ S+  L+R
Sbjct: 61  LYIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIHQFLSEISLGDLMR 118


>gi|116333404|ref|YP_794931.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116098751|gb|ABJ63900.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
          ATCC 367]
          Length = 168

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P   S +AE   IS  +L KI+Q L    IV+TV GR GG+ L R    IT+LD+  A E
Sbjct: 25 PLHSSLVAERLGISTSYLKKIVQRLAAGKIVKTVSGRVGGIVLTRNPHDITLLDIFDAIE 84


>gi|288957208|ref|YP_003447549.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909516|dbj|BAI71005.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 151

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++K+  + I  ++  A +    P +  +I     I + +L ++LQ LV+ G++  VRG
Sbjct: 2   LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVREGVLAGVRG 61

Query: 60  RRGGVRLCRPADQITILDVVK-------ATEESFFVAECFASHKIDCPLVGS 104
            RGG RL R   +IT+ ++VK       AT+     A     H++  PL G 
Sbjct: 62  PRGGYRLARERRRITLGEIVKVVRAMETATDPIEEPAGSVLGHQVVRPLWGE 113


>gi|229167407|ref|ZP_04295145.1| Transcriptional regulator [Bacillus cereus AH621]
 gi|228615969|gb|EEK73056.1| Transcriptional regulator [Bacillus cereus AH621]
          Length = 120

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 24 PNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          PN+   + Q+AE   +S  +L KIL  L K G++ +  G +GG  L    + I+ LD++ 
Sbjct: 9  PNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSSNWEDISFLDIIH 68

Query: 81 ATEESFFVAEC 91
          A E    + EC
Sbjct: 69 AIEGKTSLFEC 79


>gi|227538160|ref|ZP_03968209.1| possible transcription regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242003|gb|EEI92018.1| possible transcription regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 149

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R +MY A  +    +  I +IAEA    E FL KILQ L K G++ + +G 
Sbjct: 8   FSKTCEYALRAVMYIAQCSQQGEKVGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GG  +     +  + D+V + +       C  +  +D C     C L    +K     F
Sbjct: 68  NGGFYMTPEDTKRPLADIVSSIDGVQLFEGC--AMGLDYCSKENPCPLHHDFKKIRKKLF 125

Query: 120 DVLTQYSI 127
            +L + SI
Sbjct: 126 VMLQETSI 133


>gi|149369729|ref|ZP_01889581.1| transcriptional regulator, rrf2 family protein [unidentified
           eubacterium SCB49]
 gi|149357156|gb|EDM45711.1| transcriptional regulator, rrf2 family protein [unidentified
           eubacterium SCB49]
          Length = 138

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+++T YGI+ L Y A    ND P +I+ IA +  IS+ FL  IL  L KAG++ + +G+
Sbjct: 2   LSRKTKYGIKALTYLAQQEGND-PTQIAVIAVSENISQKFLESILLTLRKAGVLGSKKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
            GG  L + AD I I  + +  E    +  C    F     DCP   +C + +++ +  +
Sbjct: 61  GGGYYLLKDADSIKISQIYRVLEGPIAMVPCVSLNFYEKCDDCPDEDTCSVHNLMIQVRD 120

Query: 117 AFFDVLTQYSIECLVRNR 134
           +  ++L   ++  ++  +
Sbjct: 121 STLNILENTTLADIISEQ 138


>gi|229523430|ref|ZP_04412837.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
 gi|229339793|gb|EEO04808.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
          Length = 160

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I+I  V+ A +ES    +C  + K DC     C LT  L + L++
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 102


>gi|331673987|ref|ZP_08374750.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA280]
 gi|331069260|gb|EGI40652.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA280]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|320662819|gb|EFX30151.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O55:H7 str. USDA 5905]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|295097923|emb|CBK87013.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|225628410|ref|ZP_03786444.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
 gi|225616256|gb|EEH13304.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIAC 114


>gi|15892655|ref|NP_360369.1| hypothetical protein RC0732 [Rickettsia conorii str. Malish 7]
 gi|15619826|gb|AAL03270.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 139

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L KA +V+ +RG
Sbjct: 1  MMLTTKGRYAVMAILEMASKSSTEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L    ++I I D++ A  E+F +  C+
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93


>gi|16761458|ref|NP_457075.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. CT18]
 gi|16765864|ref|NP_461479.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|29140845|ref|NP_804187.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
 gi|56412578|ref|YP_149653.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181108|ref|YP_217525.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161612691|ref|YP_001586656.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549428|ref|ZP_02343187.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA29]
 gi|167992670|ref|ZP_02573766.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168232118|ref|ZP_02657176.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CDC 191]
 gi|168238283|ref|ZP_02663341.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|168243329|ref|ZP_02668261.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL486]
 gi|168261413|ref|ZP_02683386.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Hadar str.
          RI_05P066]
 gi|168466699|ref|ZP_02700553.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Newport
          str. SL317]
 gi|168821475|ref|ZP_02833475.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|194444495|ref|YP_002041806.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194448157|ref|YP_002046605.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194472929|ref|ZP_03078913.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CVM29188]
 gi|194737710|ref|YP_002115607.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197261796|ref|ZP_03161870.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA23]
 gi|197361513|ref|YP_002141149.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243196|ref|YP_002216610.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387218|ref|ZP_03213830.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Virchow
          str. SL491]
 gi|204929440|ref|ZP_03220514.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Javiana
          str. GA_MM04042433]
 gi|205353643|ref|YP_002227444.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857952|ref|YP_002244603.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|213161574|ref|ZP_03347284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E00-7866]
 gi|213416856|ref|ZP_03350000.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
 gi|213425310|ref|ZP_03358060.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213580754|ref|ZP_03362580.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213622388|ref|ZP_03375171.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
 gi|213646424|ref|ZP_03376477.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
 gi|213855574|ref|ZP_03383814.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. M223]
 gi|224582916|ref|YP_002636714.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912665|ref|ZP_04656502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289825402|ref|ZP_06544639.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-3139]
 gi|75481667|sp|Q57LG8|ISCR_SALCH RecName: Full=HTH-type transcriptional regulator iscR
 gi|81362034|sp|Q5PNG2|ISCR_SALPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|81416273|sp|Q7CQ10|ISCR_SALTY RecName: Full=HTH-type transcriptional regulator iscR
 gi|81849081|sp|Q8XF25|ISCR_SALTI RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044751|sp|A9N1X3|ISCR_SALPB RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711622|sp|B5FR87|ISCR_SALDC RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711623|sp|B5R5A3|ISCR_SALEP RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711624|sp|B5RD13|ISCR_SALG2 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711625|sp|B4TDB7|ISCR_SALHS RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711626|sp|B4T1C0|ISCR_SALNS RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711627|sp|B5BAW5|ISCR_SALPK RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711628|sp|B4TRX7|ISCR_SALSV RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806056|sp|C0PYK6|ISCR_SALPC RecName: Full=HTH-type transcriptional regulator iscR
 gi|25303602|pir||AG0824 conserved hypothetical protein STY2790 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421089|gb|AAL21438.1| hypothetical protein STM2544 [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|16503758|emb|CAD02747.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29136470|gb|AAO68036.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|56126835|gb|AAV76341.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128741|gb|AAX66444.1| believed to be involved in assembly of Fe-S clusters [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
 gi|161362055|gb|ABX65823.1| hypothetical protein SPAB_00388 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194403158|gb|ACF63380.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Newport
          str. SL254]
 gi|194406461|gb|ACF66680.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL476]
 gi|194459293|gb|EDX48132.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CVM29188]
 gi|194713212|gb|ACF92433.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. CVM19633]
 gi|195630843|gb|EDX49435.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Newport
          str. SL317]
 gi|197092989|emb|CAR58421.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|197240051|gb|EDY22671.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA23]
 gi|197288800|gb|EDY28173.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|197937712|gb|ACH75045.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Dublin
          str. CT_02021853]
 gi|199604316|gb|EDZ02861.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Virchow
          str. SL491]
 gi|204321159|gb|EDZ06359.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Javiana
          str. GA_MM04042433]
 gi|205273424|emb|CAR38399.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|205325358|gb|EDZ13197.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA29]
 gi|205329099|gb|EDZ15863.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|205333691|gb|EDZ20455.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CDC 191]
 gi|205337574|gb|EDZ24338.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL486]
 gi|205341984|gb|EDZ28748.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|205349628|gb|EDZ36259.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Hadar str.
          RI_05P066]
 gi|206709755|emb|CAR34107.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|224467443|gb|ACN45273.1| hypothetical protein SPC_1107 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|261247740|emb|CBG25568.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267994666|gb|ACY89551.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159093|emb|CBW18607.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312913533|dbj|BAJ37507.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|320087042|emb|CBY96811.1| HTH-type transcriptional regulator iscR [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|321222751|gb|EFX47822.1| Iron-sulfur cluster regulator IscR [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322613314|gb|EFY10256.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322620482|gb|EFY17347.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625050|gb|EFY21879.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629506|gb|EFY26282.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633893|gb|EFY30632.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635499|gb|EFY32210.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639825|gb|EFY36504.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322644289|gb|EFY40833.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322652256|gb|EFY48613.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654836|gb|EFY51153.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322658236|gb|EFY54502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322661693|gb|EFY57911.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669673|gb|EFY65819.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673320|gb|EFY69425.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322674891|gb|EFY70978.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322682914|gb|EFY78932.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322685575|gb|EFY81570.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|322715598|gb|EFZ07169.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
 gi|323130874|gb|ADX18304.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194686|gb|EFZ79876.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200370|gb|EFZ85451.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201270|gb|EFZ86337.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323208340|gb|EFZ93280.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211584|gb|EFZ96422.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323216016|gb|EGA00748.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221911|gb|EGA06305.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225596|gb|EGA09823.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229313|gb|EGA13437.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235372|gb|EGA19456.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237442|gb|EGA21505.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245197|gb|EGA29198.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323248771|gb|EGA32698.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254049|gb|EGA37870.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254914|gb|EGA38706.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262019|gb|EGA45584.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267803|gb|EGA51284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269638|gb|EGA53090.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624365|gb|EGE30710.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Dublin str. 3246]
 gi|326628745|gb|EGE35088.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
 gi|332989471|gb|AEF08454.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhimurium str. UK-1]
          Length = 164

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|296104217|ref|YP_003614363.1| putative FeS cluster assembly transcriptional regulator IscR
          [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058676|gb|ADF63414.1| putative FeS cluster assembly transcriptional regulator IscR
          [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|288934077|ref|YP_003438136.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Klebsiella variicola At-22]
 gi|290508273|ref|ZP_06547644.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella sp. 1_1_55]
 gi|288888806|gb|ADC57124.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
          At-22]
 gi|289777667|gb|EFD85664.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella sp. 1_1_55]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|241763770|ref|ZP_04761817.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241366989|gb|EER61385.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  +LN 
Sbjct: 61  PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116

Query: 118 ----FFDVLT 123
               F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|329119447|ref|ZP_08248132.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464380|gb|EGF10680.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H      +++ I+E   IS  +L ++   L +AG+V+++RG
Sbjct: 21  MRLTTKGRFAVTAMLDLAMHAQKGAVKLNDISERQNISLSYLEQLFGKLRRAGLVDSIRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L   A  I+I  ++ A E+      C  S K +C     C LT  L + LN
Sbjct: 81  PGGGYILAADARNISIAQIITAAEDKLDATLC--SGKTNCHNGAPC-LTHDLWENLN 134


>gi|262196227|ref|YP_003267436.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262079574|gb|ACY15543.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 140

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 42/99 (42%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    + +L         P     IA +   +   + ++L  L KAG+  + RG  G
Sbjct: 1   MNTRFAVAVHILTLLQAQAGEPASSEWIAGSVNTNPALIRRLLSQLAKAGLTRSQRGAGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           G  L R AD IT+ DV +A  +   V    A+    CP+
Sbjct: 61  GALLARSADSITLADVYQAVSDDADVIPIHAAPNPKCPV 99


>gi|289803176|ref|ZP_06533805.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 155

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|74313057|ref|YP_311476.1| DNA-binding transcriptional regulator IscR [Shigella sonnei
          Ss046]
 gi|157162006|ref|YP_001459324.1| DNA-binding transcriptional regulator IscR [Escherichia coli HS]
 gi|170019186|ref|YP_001724140.1| DNA-binding transcriptional regulator IscR [Escherichia coli ATCC
          8739]
 gi|191169254|ref|ZP_03031006.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B7A]
 gi|193068431|ref|ZP_03049394.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E110019]
 gi|209920008|ref|YP_002294092.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          SE11]
 gi|218555056|ref|YP_002387969.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          IAI1]
 gi|256017320|ref|ZP_05431185.1| DNA-binding transcriptional regulator IscR [Shigella sp. D9]
 gi|260856625|ref|YP_003230516.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O26:H11 str. 11368]
 gi|260869220|ref|YP_003235622.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O111:H- str. 11128]
 gi|300817699|ref|ZP_07097914.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 107-1]
 gi|300820799|ref|ZP_07100949.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 119-7]
 gi|309794422|ref|ZP_07688845.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 145-7]
 gi|331669279|ref|ZP_08370127.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA271]
 gi|331678524|ref|ZP_08379199.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H591]
 gi|332278315|ref|ZP_08390728.1| DNA-binding transcriptional repressor [Shigella sp. D9]
 gi|119371152|sp|Q3YZ21|ISCR_SHISS RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044744|sp|A8A337|ISCR_ECOHS RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044746|sp|B1IWD0|ISCR_ECOLC RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711613|sp|B7M7N4|ISCR_ECO8A RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711616|sp|B6I5A3|ISCR_ECOSE RecName: Full=HTH-type transcriptional regulator iscR
 gi|73856534|gb|AAZ89241.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|157067686|gb|ABV06941.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli HS]
 gi|169754114|gb|ACA76813.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
          ATCC 8739]
 gi|190900707|gb|EDV60504.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B7A]
 gi|192958383|gb|EDV88823.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E110019]
 gi|209913267|dbj|BAG78341.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218361824|emb|CAQ99422.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
 gi|257755274|dbj|BAI26776.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O26:H11 str. 11368]
 gi|257765576|dbj|BAI37071.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O111:H- str. 11128]
 gi|300526552|gb|EFK47621.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 119-7]
 gi|300529687|gb|EFK50749.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 107-1]
 gi|308121878|gb|EFO59140.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 145-7]
 gi|320200095|gb|EFW74684.1| Iron-sulfur cluster regulator IscR [Escherichia coli EC4100B]
 gi|323156187|gb|EFZ42346.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli EPECa14]
 gi|323169392|gb|EFZ55068.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          sonnei 53G]
 gi|323177344|gb|EFZ62932.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 1180]
 gi|323941207|gb|EGB37392.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli E482]
 gi|323944588|gb|EGB40656.1| iron-sulfur cluster assembly transcription protein IscR
          [Escherichia coli H120]
 gi|324020053|gb|EGB89272.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 117-3]
 gi|331064473|gb|EGI36384.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA271]
 gi|331074984|gb|EGI46304.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H591]
 gi|332100667|gb|EGJ04013.1| DNA-binding transcriptional repressor [Shigella sp. D9]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|206579114|ref|YP_002237116.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella pneumoniae 342]
 gi|226711620|sp|B5XNJ6|ISCR_KLEP3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|206568172|gb|ACI09948.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella pneumoniae 342]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|189023190|ref|YP_001932931.1| RRF2 family protein [Brucella abortus S19]
 gi|225686866|ref|YP_002734838.1| Rrf2 family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|237817484|ref|ZP_04596475.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|254706516|ref|ZP_05168344.1| transcriptional regulator, Rrf2 family protein [Brucella
           pinnipedialis M163/99/10]
 gi|256261998|ref|ZP_05464530.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260757261|ref|ZP_05869609.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260883065|ref|ZP_05894679.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297250169|ref|ZP_06933870.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
           bv. 5 str. B3196]
 gi|189021764|gb|ACD74485.1| RRF2 family protein [Brucella abortus S19]
 gi|225642971|gb|ACO02884.1| transcriptional regulator, Rrf2 family protein [Brucella melitensis
           ATCC 23457]
 gi|237787319|gb|EEP61536.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|260677369|gb|EEX64190.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872593|gb|EEX79662.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|263091482|gb|EEZ16018.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297174038|gb|EFH33402.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
           bv. 5 str. B3196]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIAC 114


>gi|153852839|ref|ZP_01994276.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
 gi|149754481|gb|EDM64412.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
          Length = 144

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A + N    R+  I+    I+  ++ +I+  L KAG V + RG
Sbjct: 1   MKISTKGRYALRIMIDLAENANGEYIRLKDISARQGITLKYMEQIMPMLTKAGYVRSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALN 116
             GG  L +  ++ T  D+++ TE S     C       C     C        L+K ++
Sbjct: 61  NNGGYMLAKEPEEYTAGDIIRTTEGSLAPIACLDDVPNRCERQDQCSTLEFWEGLKKVID 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
            + D +T   +  LV+N   
Sbjct: 121 QYVDGVT---LADLVKNHEE 137


>gi|15803058|ref|NP_289088.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 EDL933]
 gi|15832651|ref|NP_311424.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 str. Sakai]
 gi|16130456|ref|NP_417026.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|24113860|ref|NP_708370.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
          str. 301]
 gi|26248899|ref|NP_754939.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          CFT073]
 gi|30063921|ref|NP_838092.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
          str. 2457T]
 gi|82544980|ref|YP_408927.1| DNA-binding transcriptional regulator IscR [Shigella boydii
          Sb227]
 gi|82777914|ref|YP_404263.1| DNA-binding transcriptional regulator IscR [Shigella dysenteriae
          Sd197]
 gi|89109337|ref|AP_003117.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
          substr. W3110]
 gi|91211858|ref|YP_541844.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          UTI89]
 gi|110642696|ref|YP_670426.1| DNA-binding transcriptional regulator IscR [Escherichia coli 536]
 gi|110806462|ref|YP_689982.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 5
          str. 8401]
 gi|117624759|ref|YP_853672.1| DNA-binding transcriptional regulator IscR [Escherichia coli APEC
          O1]
 gi|157158615|ref|YP_001463854.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          E24377A]
 gi|168748404|ref|ZP_02773426.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4113]
 gi|168761147|ref|ZP_02786154.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4501]
 gi|168768629|ref|ZP_02793636.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4486]
 gi|168773549|ref|ZP_02798556.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4196]
 gi|168778503|ref|ZP_02803510.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4076]
 gi|168787883|ref|ZP_02812890.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC869]
 gi|168798908|ref|ZP_02823915.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC508]
 gi|170082141|ref|YP_001731461.1| Fe-S cluster-containing transcription factor [Escherichia coli
          str. K-12 substr. DH10B]
 gi|170684046|ref|YP_001744720.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          SMS-3-5]
 gi|187732827|ref|YP_001881322.1| DNA-binding transcriptional regulator IscR [Shigella boydii CDC
          3083-94]
 gi|188493127|ref|ZP_03000397.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 53638]
 gi|191172663|ref|ZP_03034202.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli F11]
 gi|193064097|ref|ZP_03045182.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E22]
 gi|194427320|ref|ZP_03059870.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B171]
 gi|194432170|ref|ZP_03064459.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          dysenteriae 1012]
 gi|194437555|ref|ZP_03069651.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 101-1]
 gi|195936677|ref|ZP_03082059.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 str. EC4024]
 gi|208809238|ref|ZP_03251575.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4206]
 gi|208812791|ref|ZP_03254120.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4045]
 gi|208820582|ref|ZP_03260902.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4042]
 gi|209399149|ref|YP_002272006.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4115]
 gi|215487881|ref|YP_002330312.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O127:H6 str. E2348/69]
 gi|217326708|ref|ZP_03442791.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. TW14588]
 gi|218548032|ref|YP_002381823.1| DNA-binding transcriptional regulator IscR [Escherichia
          fergusonii ATCC 35469]
 gi|218559457|ref|YP_002392370.1| DNA-binding transcriptional regulator IscR [Escherichia coli S88]
 gi|218690651|ref|YP_002398863.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          ED1a]
 gi|218696158|ref|YP_002403825.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          55989]
 gi|218701041|ref|YP_002408670.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          IAI39]
 gi|218706034|ref|YP_002413553.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          UMN026]
 gi|227887567|ref|ZP_04005372.1| transcription regulator [Escherichia coli 83972]
 gi|237705042|ref|ZP_04535523.1| iscRSUA operon transcriptional regulator [Escherichia sp.
          3_2_53FAA]
 gi|238901696|ref|YP_002927492.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|253772573|ref|YP_003035404.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254162505|ref|YP_003045613.1| DNA-binding transcriptional regulator IscR [Escherichia coli B
          str. REL606]
 gi|254794481|ref|YP_003079318.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 str. TW14359]
 gi|256021784|ref|ZP_05435649.1| DNA-binding transcriptional regulator IscR [Escherichia sp.
          4_1_40B]
 gi|260845161|ref|YP_003222939.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O103:H2 str. 12009]
 gi|261223033|ref|ZP_05937314.1| Fe-S cluster-containing transcription factor [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261259416|ref|ZP_05951949.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291283756|ref|YP_003500574.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7
          str. CB9615]
 gi|293405972|ref|ZP_06649964.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          FVEC1412]
 gi|293410946|ref|ZP_06654522.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B354]
 gi|293415799|ref|ZP_06658442.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B185]
 gi|293446885|ref|ZP_06663307.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B088]
 gi|297518205|ref|ZP_06936591.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          OP50]
 gi|298381773|ref|ZP_06991372.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          FVEC1302]
 gi|300898361|ref|ZP_07116707.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 198-1]
 gi|300904292|ref|ZP_07122150.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 84-1]
 gi|300920690|ref|ZP_07137098.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 115-1]
 gi|300927102|ref|ZP_07142852.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 182-1]
 gi|300930175|ref|ZP_07145593.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 187-1]
 gi|300940215|ref|ZP_07154815.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 21-1]
 gi|300951758|ref|ZP_07165577.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 116-1]
 gi|300958835|ref|ZP_07170946.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 175-1]
 gi|300982031|ref|ZP_07175853.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 45-1]
 gi|300998260|ref|ZP_07181948.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 200-1]
 gi|301022140|ref|ZP_07186063.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 196-1]
 gi|301024813|ref|ZP_07188450.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 69-1]
 gi|301047168|ref|ZP_07194261.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 185-1]
 gi|301302889|ref|ZP_07209017.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 124-1]
 gi|301330373|ref|ZP_07223018.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 78-1]
 gi|301648289|ref|ZP_07248030.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 146-1]
 gi|306814399|ref|ZP_07448561.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          NC101]
 gi|307139166|ref|ZP_07498522.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          H736]
 gi|307313898|ref|ZP_07593514.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|309784715|ref|ZP_07679348.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          dysenteriae 1617]
 gi|312965449|ref|ZP_07779681.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 2362-75]
 gi|331643152|ref|ZP_08344287.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H736]
 gi|331648229|ref|ZP_08349319.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli M605]
 gi|331653965|ref|ZP_08354966.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli M718]
 gi|331658679|ref|ZP_08359623.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA206]
 gi|331664096|ref|ZP_08365006.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA143]
 gi|331684181|ref|ZP_08384777.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H299]
 gi|84027939|sp|P0AGL0|ISCR_ECO57 RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027940|sp|P0AGK9|ISCR_ECOL6 RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027941|sp|P0AGK8|ISCR_ECOLI RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027942|sp|P0AGL1|ISCR_SHIFL RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371148|sp|Q0TEV4|ISCR_ECOL5 RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371149|sp|Q1R8K1|ISCR_ECOUT RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371150|sp|Q31XV9|ISCR_SHIBS RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371151|sp|Q32D33|ISCR_SHIDS RecName: Full=HTH-type transcriptional regulator iscR
 gi|123342619|sp|Q0T1Y8|ISCR_SHIF8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044743|sp|A7ZPX5|ISCR_ECO24 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044745|sp|A1AE68|ISCR_ECOK1 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711610|sp|B7MIM1|ISCR_ECO45 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711611|sp|B5Z105|ISCR_ECO5E RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711612|sp|B7NRI0|ISCR_ECO7I RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711614|sp|B1XB06|ISCR_ECODH RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711615|sp|B7N6B8|ISCR_ECOLU RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711617|sp|B1LNI7|ISCR_ECOSM RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711619|sp|B7LJQ3|ISCR_ESCF3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711629|sp|B2TXV6|ISCR_SHIB3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806053|sp|B7UGX7|ISCR_ECO27 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806054|sp|B7LDC3|ISCR_ECO55 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806055|sp|B7MYG4|ISCR_ECO81 RecName: Full=HTH-type transcriptional regulator iscR
 gi|259493873|sp|C4ZXA6|ISCR_ECOBW RecName: Full=HTH-type transcriptional regulator iscR
 gi|12516935|gb|AAG57645.1|AE005483_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109305|gb|AAN81507.1|AE016764_189 Hypothetical protein yfhP [Escherichia coli CFT073]
 gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. MG1655]
 gi|1799939|dbj|BAA16425.1| DNA-binding transcriptional activator [Escherichia coli str. K12
          substr. W3110]
 gi|13362868|dbj|BAB36820.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24052954|gb|AAN44077.1| orf, conserved hypothetical protein [Shigella flexneri 2a str.
          301]
 gi|30042177|gb|AAP17902.1| hypothetical protein S2750 [Shigella flexneri 2a str. 2457T]
 gi|81242062|gb|ABB62772.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81246391|gb|ABB67099.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91073432|gb|ABE08313.1| iscRSUA operon transcriptional regulator [Escherichia coli UTI89]
 gi|110344288|gb|ABG70525.1| hypothetical protein YfhP [Escherichia coli 536]
 gi|110616010|gb|ABF04677.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115513883|gb|ABJ01958.1| DNA-binding transcriptional repressor [Escherichia coli APEC O1]
 gi|157080645|gb|ABV20353.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E24377A]
 gi|169889976|gb|ACB03683.1| Fe-S cluster-containing transcription factor [Escherichia coli
          str. K-12 substr. DH10B]
 gi|170521764|gb|ACB19942.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli SMS-3-5]
 gi|187429819|gb|ACD09093.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          boydii CDC 3083-94]
 gi|187770671|gb|EDU34515.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4196]
 gi|188017096|gb|EDU55218.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4113]
 gi|188488326|gb|EDU63429.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 53638]
 gi|189003523|gb|EDU72509.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4076]
 gi|189362292|gb|EDU80711.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4486]
 gi|189368435|gb|EDU86851.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4501]
 gi|189372323|gb|EDU90739.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC869]
 gi|189378593|gb|EDU97009.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC508]
 gi|190907136|gb|EDV66736.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli F11]
 gi|192929332|gb|EDV82941.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E22]
 gi|194414641|gb|EDX30913.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B171]
 gi|194419699|gb|EDX35779.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          dysenteriae 1012]
 gi|194423361|gb|EDX39352.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 101-1]
 gi|208729039|gb|EDZ78640.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4206]
 gi|208734068|gb|EDZ82755.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4045]
 gi|208740705|gb|EDZ88387.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4042]
 gi|209160549|gb|ACI37982.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. EC4115]
 gi|209763228|gb|ACI79926.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763230|gb|ACI79927.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763232|gb|ACI79928.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763234|gb|ACI79929.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763236|gb|ACI79930.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|215265953|emb|CAS10362.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
          str. E2348/69]
 gi|217319075|gb|EEC27500.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli O157:H7 str. TW14588]
 gi|218352890|emb|CAU98689.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
 gi|218355573|emb|CAQ88185.1| DNA-binding transcriptional repressor [Escherichia fergusonii
          ATCC 35469]
 gi|218366226|emb|CAR03973.1| DNA-binding transcriptional repressor [Escherichia coli S88]
 gi|218371027|emb|CAR18854.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
 gi|218428215|emb|CAR09130.2| DNA-binding transcriptional repressor [Escherichia coli ED1a]
 gi|218433131|emb|CAR14027.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
 gi|222034242|emb|CAP76983.1| HTH-type transcriptional regulator iscR [Escherichia coli LF82]
 gi|226901408|gb|EEH87667.1| iscRSUA operon transcriptional regulator [Escherichia sp.
          3_2_53FAA]
 gi|227835917|gb|EEJ46383.1| transcription regulator [Escherichia coli 83972]
 gi|238860965|gb|ACR62963.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|242378131|emb|CAQ32904.1| IscR transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253323617|gb|ACT28219.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253974406|gb|ACT40077.1| DNA-binding transcriptional repressor [Escherichia coli B str.
          REL606]
 gi|253978573|gb|ACT44243.1| DNA-binding transcriptional repressor [Escherichia coli
          BL21(DE3)]
 gi|254593881|gb|ACT73242.1| Fe-S cluster-containing transcription factor [Escherichia coli
          O157:H7 str. TW14359]
 gi|257760308|dbj|BAI31805.1| DNA-binding transcriptional repressor IscR [Escherichia coli
          O103:H2 str. 12009]
 gi|260448389|gb|ACX38811.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
          DH1]
 gi|281179585|dbj|BAI55915.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281601934|gb|ADA74918.1| HTH-type transcriptional regulator iscR [Shigella flexneri
          2002017]
 gi|284922481|emb|CBG35568.1| transcriptional regulator [Escherichia coli 042]
 gi|290763629|gb|ADD57590.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7
          str. CB9615]
 gi|291323715|gb|EFE63143.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B088]
 gi|291428180|gb|EFF01207.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          FVEC1412]
 gi|291433447|gb|EFF06426.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B185]
 gi|291471414|gb|EFF13898.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli B354]
 gi|294489645|gb|ADE88401.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli IHE3034]
 gi|298279215|gb|EFI20729.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          FVEC1302]
 gi|299881341|gb|EFI89552.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 196-1]
 gi|300300916|gb|EFJ57301.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 185-1]
 gi|300304032|gb|EFJ58552.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 200-1]
 gi|300314520|gb|EFJ64304.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 175-1]
 gi|300357946|gb|EFJ73816.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 198-1]
 gi|300396344|gb|EFJ79882.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 69-1]
 gi|300403750|gb|EFJ87288.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 84-1]
 gi|300408859|gb|EFJ92397.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 45-1]
 gi|300412338|gb|EFJ95648.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 115-1]
 gi|300416906|gb|EFK00217.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 182-1]
 gi|300449042|gb|EFK12662.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 116-1]
 gi|300454971|gb|EFK18464.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 21-1]
 gi|300461935|gb|EFK25428.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 187-1]
 gi|300841824|gb|EFK69584.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 124-1]
 gi|300843633|gb|EFK71393.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 78-1]
 gi|301073640|gb|EFK88446.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 146-1]
 gi|305851793|gb|EFM52245.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          NC101]
 gi|306906399|gb|EFN36914.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|307554554|gb|ADN47329.1| iscRSUA operon transcriptional regulator [Escherichia coli ABU
          83972]
 gi|307625914|gb|ADN70218.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          UM146]
 gi|308927085|gb|EFP72559.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          dysenteriae 1617]
 gi|309702863|emb|CBJ02194.1| transcriptional regulator [Escherichia coli ETEC H10407]
 gi|312289869|gb|EFR17757.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 2362-75]
 gi|312947108|gb|ADR27935.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|313651020|gb|EFS15420.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri 2a str. 2457T]
 gi|315061850|gb|ADT76177.1| DNA-binding transcriptional repressor [Escherichia coli W]
 gi|315137155|dbj|BAJ44314.1| DNA-binding transcriptional repressor [Escherichia coli DH1]
 gi|315256552|gb|EFU36520.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 85-1]
 gi|315288054|gb|EFU47456.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 110-3]
 gi|315292493|gb|EFU51845.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 153-1]
 gi|315300496|gb|EFU59725.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 16-3]
 gi|315615792|gb|EFU96424.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli 3431]
 gi|320180526|gb|EFW55457.1| Iron-sulfur cluster regulator IscR [Shigella boydii ATCC 9905]
 gi|320186422|gb|EFW61152.1| Iron-sulfur cluster regulator IscR [Shigella flexneri CDC 796-83]
 gi|320188870|gb|EFW63529.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
          EC1212]
 gi|320196372|gb|EFW70996.1| Iron-sulfur cluster regulator IscR [Escherichia coli WV_060327]
 gi|320640879|gb|EFX10367.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 str. G5101]
 gi|320646322|gb|EFX15249.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H- str. 493-89]
 gi|320651502|gb|EFX19889.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H- str. H 2687]
 gi|320657213|gb|EFX25022.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320667623|gb|EFX34538.1| DNA-binding transcriptional regulator IscR [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323159301|gb|EFZ45287.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli E128010]
 gi|323170194|gb|EFZ55847.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli LT-68]
 gi|323188349|gb|EFZ73641.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli RN587/1]
 gi|323377569|gb|ADX49837.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
          KO11]
 gi|323936424|gb|EGB32714.1| iron-sulfur cluster assembly transcription protein IscR
          [Escherichia coli E1520]
 gi|323949191|gb|EGB45082.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli H252]
 gi|323955772|gb|EGB51530.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli H263]
 gi|323961347|gb|EGB56959.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli H489]
 gi|323967979|gb|EGB63391.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli M863]
 gi|323971055|gb|EGB66303.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli TA007]
 gi|323977286|gb|EGB72372.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli TW10509]
 gi|324008494|gb|EGB77713.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 57-2]
 gi|324011237|gb|EGB80456.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli MS 60-1]
 gi|324113025|gb|EGC07001.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia fergusonii B253]
 gi|324118259|gb|EGC12155.1| iron-sulfur cluster assembly transcription proteinIscR
          [Escherichia coli E1167]
 gi|325496436|gb|EGC94295.1| DNA-binding transcriptional regulator IscR [Escherichia
          fergusonii ECD227]
 gi|326340335|gb|EGD64139.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
          1125]
 gi|326345019|gb|EGD68763.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
          1044]
 gi|327252239|gb|EGE63911.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli STEC_7v]
 gi|330912307|gb|EGH40817.1| iron-sulfur cluster regulator IscR [Escherichia coli AA86]
 gi|331039950|gb|EGI12170.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H736]
 gi|331043089|gb|EGI15229.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli M605]
 gi|331048814|gb|EGI20890.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli M718]
 gi|331054344|gb|EGI26371.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA206]
 gi|331059895|gb|EGI31872.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli TA143]
 gi|331079133|gb|EGI50335.1| iron-sulfur cluster assembly transcription factor IscR
          [Escherichia coli H299]
 gi|332087982|gb|EGI93107.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          boydii 5216-82]
 gi|332089837|gb|EGI94938.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          dysenteriae 155-74]
 gi|332092768|gb|EGI97837.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          boydii 3594-74]
 gi|332344406|gb|AEE57740.1| iron-sulfur cluster assembly transcription factor protein IscR
          [Escherichia coli UMNK88]
 gi|332754063|gb|EGJ84434.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri 4343-70]
 gi|332754140|gb|EGJ84509.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri K-671]
 gi|332756387|gb|EGJ86738.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri 2747-71]
 gi|333000511|gb|EGK20090.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri VA-6]
 gi|333000908|gb|EGK20479.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri K-218]
 gi|333002329|gb|EGK21893.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri K-272]
 gi|333016152|gb|EGK35484.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri K-227]
 gi|333016465|gb|EGK35796.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
          flexneri K-304]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDES 86


>gi|197251434|ref|YP_002147499.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|226711621|sp|B5F1C1|ISCR_SALA4 RecName: Full=HTH-type transcriptional regulator iscR
 gi|197215137|gb|ACH52534.1| iron-sulfur cluster assembly transcription factor IscR
          [Salmonella enterica subsp. enterica serovar Agona str.
          SL483]
          Length = 164

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|120611113|ref|YP_970791.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|326317578|ref|YP_004235250.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120589577|gb|ABM33017.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
           AAC00-1]
 gi|323374414|gb|ADX46683.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  +LN 
Sbjct: 61  PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116

Query: 118 ----FFDVLT 123
               F D +T
Sbjct: 117 RMVEFLDSVT 126


>gi|146283373|ref|YP_001173526.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           stutzeri A1501]
 gi|145571578|gb|ABP80684.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           stutzeri A1501]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 21  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG +L R    I +  V+ A  ES     C
Sbjct: 81  PGGGYQLSRDMAGIQVAQVIDAVNESVDATRC 112


>gi|157828607|ref|YP_001494849.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165933321|ref|YP_001650110.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|229586808|ref|YP_002845309.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia africae ESF-5]
 gi|238650793|ref|YP_002916648.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
 gi|157801088|gb|ABV76341.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str.
          'Sheila Smith']
 gi|165908408|gb|ABY72704.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|228021858|gb|ACP53566.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia africae ESF-5]
 gi|238624891|gb|ACR47597.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
          Length = 139

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L KA +V+ +RG
Sbjct: 1  MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L    ++I I D++ A  E+F +  C+
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCY 93


>gi|294852949|ref|ZP_06793621.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294818604|gb|EFG35604.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIAC 114


>gi|161502301|ref|YP_001569413.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189044750|sp|A9MHJ3|ISCR_SALAR RecName: Full=HTH-type transcriptional regulator iscR
 gi|160863648|gb|ABX20271.1| hypothetical protein SARI_00332 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 164

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|256158354|ref|ZP_05456254.1| RfF2 family protein [Brucella ceti M490/95/1]
 gi|256252715|ref|ZP_05458251.1| RfF2 family protein [Brucella ceti B1/94]
 gi|260166777|ref|ZP_05753588.1| RfF2 family protein [Brucella sp. F5/99]
 gi|261219794|ref|ZP_05934075.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261756154|ref|ZP_05999863.1| RRF2 family protein [Brucella sp. F5/99]
 gi|265996865|ref|ZP_06109422.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260918378|gb|EEX85031.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261736138|gb|EEY24134.1| RRF2 family protein [Brucella sp. F5/99]
 gi|262551162|gb|EEZ07323.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 143

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA +I I ++++A + +     C
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91


>gi|237732511|ref|ZP_04562992.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
 gi|283832088|ref|ZP_06351829.1| iron-sulfur cluster assembly transcription factor IscR
          [Citrobacter youngae ATCC 29220]
 gi|226908050|gb|EEH93968.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
 gi|291071714|gb|EFE09823.1| iron-sulfur cluster assembly transcription factor IscR
          [Citrobacter youngae ATCC 29220]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|261340842|ref|ZP_05968700.1| iron-sulfur cluster assembly transcription factor IscR
          [Enterobacter cancerogenus ATCC 35316]
 gi|288317268|gb|EFC56206.1| iron-sulfur cluster assembly transcription factor IscR
          [Enterobacter cancerogenus ATCC 35316]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|311278538|ref|YP_003940769.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
          SCF1]
 gi|308747733|gb|ADO47485.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
          SCF1]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|296158336|ref|ZP_06841167.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          Ch1-1]
 gi|295891280|gb|EFG71067.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          Ch1-1]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|283786146|ref|YP_003366011.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282949600|emb|CBG89219.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|225871965|ref|YP_002753419.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791981|gb|ACO32071.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +  R   G+  ++  A   D       IA     + + + ++   L  AG+V++ +G 
Sbjct: 1  MAVNTRFATGVHAMVLLAAEPDTLQTSETIAGRLETNPVVVRRVFSLLHHAGLVDSHKGP 60

Query: 61 RGGVRLCRPADQITILDVVKA--TEESFFVAECFAS 94
           GG +L RPA QIT+ D+ KA  T + F  AE FAS
Sbjct: 61 SGGSKLARPAKQITLADIYKALDTGDLFHTAE-FAS 95


>gi|313672780|ref|YP_004050891.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939536|gb|ADR18728.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 144

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          + K  DY IR++ Y  +  D   ++ +I+E   IS+    KIL  L K GI++T  G+ G
Sbjct: 4  VKKEVDYAIRIIAYL-LGKDNLVKMEEISEKLFISQPNTIKILHKLSKCGIIKTKTGKNG 62

Query: 63 GVRLCRPADQITILDVV 79
          G+ L +    ++I D++
Sbjct: 63 GIILKKEVIDLSIYDIL 79


>gi|310819041|ref|YP_003951399.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392113|gb|ADO69572.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           TDYG+ +L   A          ++AE   +    + K+L+ L  AG++ + RG  GG  L
Sbjct: 2   TDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMGGYGL 61

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            RPA  I +  V+ A E    +  C   H    P   SC L SV R  +   + V+ Q  
Sbjct: 62  ARPAAAIPLTQVISALEGPVAITACV-QHTDGEP---SCELESVCR--IRGHWRVINQAI 115

Query: 127 IECLVR 132
            E L R
Sbjct: 116 QEALGR 121


>gi|146312669|ref|YP_001177743.1| DNA-binding transcriptional regulator IscR [Enterobacter sp. 638]
 gi|189044747|sp|A4WDB2|ISCR_ENT38 RecName: Full=HTH-type transcriptional regulator iscR
 gi|145319545|gb|ABP61692.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp.
          638]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|167647686|ref|YP_001685349.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167350116|gb|ABZ72851.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 146

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A  +       ++A        FL  IL  L + G+V + RG+ G
Sbjct: 2   LSQKARYALRAMIELARESGQVT-AGELAVRADAPRKFLEAILLTLARQGLVTSRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L R  DQI+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYLLGRGPDQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120

Query: 119 FDVLTQYSI 127
             VL  YS+
Sbjct: 121 AAVLEGYSL 129


>gi|294637705|ref|ZP_06715982.1| iron-sulfur cluster assembly transcription factor IscR
          [Edwardsiella tarda ATCC 23685]
 gi|291089135|gb|EFE21696.1| iron-sulfur cluster assembly transcription factor IscR
          [Edwardsiella tarda ATCC 23685]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 13 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 72

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I +  V+ A +ES
Sbjct: 73 PGGGYLLGKDAADIAVGAVITAVDES 98


>gi|170694738|ref|ZP_02885889.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          graminis C4D1M]
 gi|170140369|gb|EDT08546.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          graminis C4D1M]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|296135538|ref|YP_003642780.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|294339667|emb|CAZ88027.1| HTH-type transcriptional regulator iscR [Thiomonas sp. 3As]
 gi|295795660|gb|ADG30450.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDVAMRQHLGPVTLAGISQRQHISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R +++I+I D++ A +E     +C      +    G C +T  L   LNA  
Sbjct: 61  PGGGYTLSRKSEEISIADIIIAVDEPLDATQCGGKENCNGEDNGPC-MTHDLWAQLNAKM 119

Query: 119 FDVLTQYSIECLVR 132
            + L   +++ LV 
Sbjct: 120 VEFLDSVNLKGLVE 133


>gi|209519995|ref|ZP_03268774.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          H160]
 gi|209499592|gb|EDZ99668.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          H160]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|312962917|ref|ZP_07777404.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens WH6]
 gi|311282944|gb|EFQ61538.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens WH6]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 63  MRLTTKGRYAVTAMLDLALHAQAGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG +L R    I +  V+ A  ES    +C
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 154


>gi|91784249|ref|YP_559455.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
          xenovorans LB400]
 gi|91688203|gb|ABE31403.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          xenovorans LB400]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|62317939|ref|YP_223792.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|254691631|ref|ZP_05154885.1| RfF2 family protein [Brucella abortus bv. 6 str. 870]
 gi|254695073|ref|ZP_05156901.1| RfF2 family protein [Brucella abortus bv. 3 str. Tulya]
 gi|254698170|ref|ZP_05159998.1| RfF2 family protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699245|ref|ZP_05161073.1| RfF2 family protein [Brucella suis bv. 5 str. 513]
 gi|254711200|ref|ZP_05173011.1| RfF2 family protein [Brucella pinnipedialis B2/94]
 gi|254711800|ref|ZP_05173611.1| RfF2 family protein [Brucella ceti M644/93/1]
 gi|254714868|ref|ZP_05176679.1| RfF2 family protein [Brucella ceti M13/05/1]
 gi|254731614|ref|ZP_05190192.1| RfF2 family protein [Brucella abortus bv. 4 str. 292]
 gi|256030172|ref|ZP_05443786.1| RfF2 family protein [Brucella pinnipedialis M292/94/1]
 gi|256059824|ref|ZP_05450018.1| RfF2 family protein [Brucella neotomae 5K33]
 gi|256112195|ref|ZP_05453116.1| RfF2 family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256256818|ref|ZP_05462354.1| RfF2 family protein [Brucella abortus bv. 9 str. C68]
 gi|260544123|ref|ZP_05819944.1| RRF2 family protein [Brucella abortus NCTC 8038]
 gi|260564084|ref|ZP_05834569.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260759374|ref|ZP_05871722.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762617|ref|ZP_05874949.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261215425|ref|ZP_05929706.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261216557|ref|ZP_05930838.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261313970|ref|ZP_05953167.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318791|ref|ZP_05957988.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261319428|ref|ZP_05958625.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261323803|ref|ZP_05963000.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261749683|ref|ZP_05993392.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|265987202|ref|ZP_06099759.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265993622|ref|ZP_06106179.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|62198132|gb|AAX76431.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|260097394|gb|EEW81268.1| RRF2 family protein [Brucella abortus NCTC 8038]
 gi|260151727|gb|EEW86820.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260669692|gb|EEX56632.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673038|gb|EEX59859.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260917032|gb|EEX83893.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260921646|gb|EEX88214.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292118|gb|EEX95614.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298014|gb|EEY01511.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299783|gb|EEY03280.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302996|gb|EEY06493.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261739436|gb|EEY27362.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262764492|gb|EEZ10524.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|264659399|gb|EEZ29660.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|326411283|gb|ADZ68347.1| RRF2 family protein [Brucella melitensis M28]
 gi|326554572|gb|ADZ89211.1| RRF2 family protein [Brucella melitensis M5-90]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA +I I ++++A + +     C
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91


>gi|152971394|ref|YP_001336503.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|238895988|ref|YP_002920724.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
          NTUH-K2044]
 gi|262040270|ref|ZP_06013521.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
          13884]
 gi|330007731|ref|ZP_08306057.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella sp. MS 92-3]
 gi|189044749|sp|A6TCF2|ISCR_KLEP7 RecName: Full=HTH-type transcriptional regulator iscR
 gi|150956243|gb|ABR78273.1| Fe-S cluster-containing transcription factor [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548306|dbj|BAH64657.1| Fe-S cluster-containing transcription factor [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042379|gb|EEW43399.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
          13884]
 gi|328535344|gb|EGF61827.1| iron-sulfur cluster assembly transcription factor IscR
          [Klebsiella sp. MS 92-3]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|126641870|ref|YP_001084854.1| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
 gi|213157474|ref|YP_002319519.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|215483319|ref|YP_002325530.1| Transcriptional regulator family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239504201|ref|ZP_04663511.1| putative transcriptional regulator [Acinetobacter baumannii AB900]
 gi|213056634|gb|ACJ41536.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|213986810|gb|ACJ57109.1| Transcriptional regulator family protein [Acinetobacter baumannii
           AB307-0294]
          Length = 141

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           F +   D    G C + +V+ +A  A  D L  +++
Sbjct: 61  FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTL 96


>gi|187924557|ref|YP_001896199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Burkholderia phytofirmans PsJN]
 gi|187715751|gb|ACD16975.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          phytofirmans PsJN]
          Length = 176

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|322389974|ref|ZP_08063513.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
 gi|321143287|gb|EFX38726.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
          Length = 149

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +     S  +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  L + +D+I++LD+ +A E      + F  H    P
Sbjct: 61  T-GGAELAKASDEISLLDIYQAVECLGSTGQLFGFHDNPNP 100


>gi|17988524|ref|NP_541157.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|17984317|gb|AAL53421.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
          Length = 162

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 21  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 80

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 81  GGFCLAHPASEIAIGNIIRALDGALAPIAC 110


>gi|229505639|ref|ZP_04395149.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
 gi|229510689|ref|ZP_04400168.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
 gi|229513114|ref|ZP_04402580.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
 gi|229517811|ref|ZP_04407255.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
 gi|229525393|ref|ZP_04414798.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
           VL426]
 gi|229530123|ref|ZP_04419513.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
 gi|229608657|ref|YP_002879305.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
 gi|229333897|gb|EEN99383.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
 gi|229338974|gb|EEO03991.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
           VL426]
 gi|229344526|gb|EEO09500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
 gi|229350007|gb|EEO14961.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
 gi|229350654|gb|EEO15595.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
 gi|229357862|gb|EEO22779.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
 gi|229371312|gb|ACQ61735.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
          Length = 160

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           I+I  V+ A +ES    +C  + K DC     C LT  L + L++
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRC-LTHTLWRDLSS 102


>gi|197119432|ref|YP_002139859.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197088792|gb|ACH40063.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 162

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L Y   +       I  +AE    ++ +L KI   L K GIV +V G
Sbjct: 1   MQFSVGVEYALHSLFYLVNVPEGKTVGIRHLAELHGSTDSYLSKIFAKLRKTGIVRSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------CPLVGSCGL 107
            +GG  L R  + I+  D+++A E   +  +C    K +            CP    C +
Sbjct: 61  VKGGYELARLPEAISFWDIIEAVEGPSYFFQCNEMRKKNIFVSDPSIFTDRCP----CLI 116

Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
             V++ A N F + L   S+  L
Sbjct: 117 KVVIQDAENVFRNELRNKSLRWL 139


>gi|229592453|ref|YP_002874572.1| hypothetical protein PFLU5069 [Pseudomonas fluorescens SBW25]
 gi|229364319|emb|CAY52066.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 63  MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG +L R    I +  V+ A  ES    +C
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKC 154


>gi|41408581|ref|NP_961417.1| hypothetical protein MAP2483c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396939|gb|AAS04800.1| hypothetical protein MAP_2483c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 161

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L RP   I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  REGGYELARPGKDISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL + ++
Sbjct: 119 RSVLEETTL 127


>gi|306820775|ref|ZP_07454400.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551165|gb|EFM39131.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+ TDY +R+L Y +  +      S ++E   I   F  KIL+ L   GI +  RG 
Sbjct: 1  MRITQETDYALRILDYLSATDKEIVGASVLSEDLNIPVRFALKILRKLNLYGITKANRGV 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           GG  L    + I    VV+A E   ++ +C    
Sbjct: 61 SGGYFLLMKPEDINYKMVVEAIEGEIYINKCLQDR 95


>gi|161621161|ref|YP_001595047.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|163845438|ref|YP_001623093.1| Rrf2 family transcriptional regulator protein [Brucella suis ATCC
           23445]
 gi|161337972|gb|ABX64276.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|163676161|gb|ABY40271.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
           23445]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L  PA +I I ++++A + +     C
Sbjct: 85  GGFCLTHPASEIAIGNIIRALDGALAPIAC 114


>gi|186476217|ref|YP_001857687.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184192676|gb|ACC70641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          phymatum STM815]
          Length = 174

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A+ +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQC 92


>gi|305664587|ref|YP_003860874.1| BadM/Rrf2 family transcriptional regulator [Maribacter sp.
           HTCC2170]
 gi|88708604|gb|EAR00840.1| transcriptional regulator, BadM/Rrf2 family protein [Maribacter sp.
           HTCC2170]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L + A   N  P +I++IA    IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGLKALTFLASQENRQPVQIAEIARNENISQKFLESILLSLRKTGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I + DV++  E    +  C    F     DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLIKEPKDILMTDVMRILEGPIAMVPCVSLNFYERCEDCPDEKTCSVHKLMLQVRDS 121

Query: 118 FFDVLTQYSIECLVR 132
             ++    ++  L++
Sbjct: 122 ALEIYRNNTLADLIK 136


>gi|327402275|ref|YP_004343113.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
           DSM 16823]
 gi|327317783|gb|AEA42275.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
           DSM 16823]
          Length = 139

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y +  L Y A    + P  I +I+E   I   FL  IL  L K GI+ +  G+ 
Sbjct: 2   LSKKTKYALHALTYLAKKEANEPTLILEISENGHIPRKFLESILLDLKKQGILNSKMGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  +++       +  C + +      +C    +CGL  V     N 
Sbjct: 62  GGYFLRQTPTEIQISTIIRLFNGPIALLPCVSLNYYQRCDECTDEKTCGLNKVFIDVRNE 121

Query: 118 FFDVLTQYSIECLV 131
              +L   SI+ +V
Sbjct: 122 TLRILENKSIQDIV 135


>gi|261885524|ref|ZP_06009563.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  I++   +S+ +L ++L  L   G V +++G +GG  L +  D+IT  D+  A E
Sbjct: 12  PVSLKDISQNIGVSKNYLEQVLNTLRNTGFVSSIKGLKGGYFLNKTLDEITFYDIFYALE 71

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
             F +      H             LT +  K L++F +  +Q
Sbjct: 72  NDFGLTSLNVEHSSYNLFFKEYNEKLTELFSKPLSSFKEYHSQ 114


>gi|229154646|ref|ZP_04282763.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|228629044|gb|EEK85754.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
          +AE   +SE FL K+   L KA IV +V G +GG RL +  + I+  DV++A E    + 
Sbjct: 1  MAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIF 60

Query: 90 EC 91
          +C
Sbjct: 61 QC 62


>gi|157144531|ref|YP_001451850.1| DNA-binding transcriptional regulator IscR [Citrobacter koseri
          ATCC BAA-895]
 gi|189044742|sp|A8AD51|ISCR_CITK8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|157081736|gb|ABV11414.1| hypothetical protein CKO_00250 [Citrobacter koseri ATCC BAA-895]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG  L + A  I + +V+ A +ES
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDES 86


>gi|254786630|ref|YP_003074059.1| iron-sulfur cluster assembly transcription factor IscR
          [Teredinibacter turnerae T7901]
 gi|237686389|gb|ACR13653.1| iron-sulfur cluster assembly transcription factor IscR
          [Teredinibacter turnerae T7901]
          Length = 164

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L +  +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQRGPVSLADISKRQGISLSYLEQLFAKLRQNALVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R A ++ +  +V A  ES     C
Sbjct: 61 PGGGYKLSREASELFVAQIVDAVNESIDATSC 92


>gi|313905574|ref|ZP_07838937.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469637|gb|EFR64976.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 9   YGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           Y +RV++  A  + D    +  IAE   IS+ +L  I + +V+  ++    G+ GG RL 
Sbjct: 8   YALRVMIDLAQQDSDDFVPLKDIAERQDISKKYLEIIAKEMVRGKLIVGASGKHGGYRLV 67

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
           R  ++ ++ +V+   E +F    C A +  +CP    C   S+ ++    F+++  ++
Sbjct: 68  RRPEEYSVGEVIDLMEGTFAPVVCLACNAEECPRADKCKTLSMWKE----FYEIEKEF 121


>gi|227539117|ref|ZP_03969166.1| rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241067|gb|EEI91082.1| rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 142

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ LM     +   P +I +IA+   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  V++  +    +  C    F     +C     CG+        NA
Sbjct: 62  GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   SI  L+     +
Sbjct: 122 MLQILNDTSIAHLINKEKEL 141


>gi|255532922|ref|YP_003093294.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
          2366]
 gi|255345906|gb|ACU05232.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
          2366]
          Length = 155

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T + +YG+R+L+    H D+ + IS   I+EA  +S  ++ K+ + L  AG + +  
Sbjct: 1  MKITAQEEYGLRILLRIGRH-DHGDGISIPAISEAEGLSGAYVAKLTRILRMAGYINSTP 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87
          G +GG  L + A QI I  V+K    + +
Sbjct: 60 GNKGGYVLAQTAGQININQVMKVLGGALY 88


>gi|227820042|ref|YP_002824013.1| Rrf2 family transcriptional regulator [Sinorhizobium fredii
          NGR234]
 gi|36958592|gb|AAQ87060.1| probable RF2 family protein [Sinorhizobium fredii NGR234]
 gi|227339041|gb|ACP23260.1| putative Rrf2 family transcriptional regulator protein
          [Sinorhizobium fredii NGR234]
          Length = 162

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          CAI    P         +AE   + + +L K LQ L +AG+V T  G  GG RL R   +
Sbjct: 14 CAILAGLPEGRYLSTKSLAEFHGVPKEYLSKALQSLSQAGLVHTTLGPSGGYRLARKPAE 73

Query: 73 ITILDVVKATE 83
          +T LD+V+A E
Sbjct: 74 LTFLDIVEAVE 84


>gi|219847295|ref|YP_002461728.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus
          aggregans DSM 9485]
 gi|219541554|gb|ACL23292.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus
          aggregans DSM 9485]
          Length = 146

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +YG+R +   A H  + P +   IA    I   +L ++L  L +AG+VE++RG
Sbjct: 1  MRISSKGEYGLRAVFDLAQHYGEGPIQSESIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L R  + I++L+V+   E      E
Sbjct: 61 PQGGHLLARSPETISLLEVLTVLEGPILPTE 91


>gi|229020328|ref|ZP_04177094.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229026559|ref|ZP_04182908.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228734736|gb|EEL85381.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228740964|gb|EEL91196.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 157

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
           +++   +S  +L K+++ LV+AG+V +V G +GG RL    ++I I DV  A E  ES +
Sbjct: 29  LSQQLHVSPTYLQKLMRKLVRAGLVSSVPGVKGGFRLQAVPEKIRIYDVYIAVEGLESLY 88

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            +              +C L+ V+ +A  A+  +L + +I  L
Sbjct: 89  RSNGIFHTMFQLKENTTCLLSDVMEEAEYAWKSILKRTTIASL 131


>gi|313898097|ref|ZP_07831636.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
 gi|312957125|gb|EFR38754.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +  ++  A  N     I  IA+A   S  +L +I + L KA ++ ++RG+
Sbjct: 1   MKISTKGIYALEAMIELASRNTACVSIRDIADARNCSVKYLEQIFKQLKKAQLLISIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG ++ +  ++IT  D++ A EE      C  SH   C   G C    V        + 
Sbjct: 61  DGGYQIAKDPEEITAKDIILAVEEKLDPVVCL-SHT--CTRSGICRTQPVWMGMQEQIYK 117

Query: 121 VLTQYSIECLV---RNRSS 136
           VL   +++ L    RN  S
Sbjct: 118 VLESKTLKYLTDIYRNEVS 136


>gi|300770623|ref|ZP_07080502.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300763099|gb|EFK59916.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 147

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ LM     +   P +I +IA+   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  V++  +    +  C    F     +C     CG+        NA
Sbjct: 62  GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   SI  L+     +
Sbjct: 122 MLQILNDTSIAHLINKEKEL 141


>gi|222085200|ref|YP_002543730.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722648|gb|ACM25804.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A      P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALSALAQAEAGEPTMISDIATQQKIPKKFLEQILLDLKHQGIVISRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA++IT  ++++  +       C +        DC    +C +  V  +  +A
Sbjct: 62  GGYLLRKPAEEITFGEILRIIDGPIAPLPCLSITAYRRCEDCDGEQTCEIRHVFARVADA 121

Query: 118 FFDVLTQYSI 127
              VL   +I
Sbjct: 122 TRKVLFSTTI 131


>gi|171320031|ref|ZP_02909102.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171094724|gb|EDT39767.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 179

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|119513040|ref|ZP_01632097.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
           spumigena CCY9414]
 gi|119462320|gb|EAW43300.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
           spumigena CCY9414]
          Length = 147

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++   Y P  +  IA    I   +L K+L  + +AG+V ++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPGYGPASVRSIALRQDIPAPYLEKLLIEMRRAGLVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG +L     QI+I  +++A  E+         H    P      +T  L + LN
Sbjct: 61  SIGGYQLALKPAQISIGQILEAVGETI----TRLPHHTPTPAQTEDWVTFTLWQRLN 113


>gi|288573879|ref|ZP_06392236.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569620|gb|EFC91177.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 159

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           RI ++A+A   SE  + K+ Q LV+AG+V +VRG  GG  L +   +I++  V +A E  
Sbjct: 29  RIREMAKAVEASEAHMAKVFQRLVRAGLVGSVRGPAGGFELLKKPSEISLYVVYRAIEGD 88

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
                C       CP    C       +    F D L   S+  LV
Sbjct: 89  LRPKSCVLGLS-RCPFR-ECMFGDFPNRVYEEFTDHLKSRSLGELV 132


>gi|189499610|ref|YP_001959080.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189495051|gb|ACE03599.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+  ++  A +      +I QI E   I + +L +I   LVK  +V++VRG +
Sbjct: 4   LSAKAHYGLAAMLDLADNFGKQRLQIRQIVEKRGIPKNYLEQIFNRLVKNALVKSVRGNK 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R    +T+  +++A E      E  + H            T  +R+      D+
Sbjct: 64  GGYELARSPSSLTVFSILEALEGKL---EIVSDHD-----------TKAMRQTFGNLEDL 109

Query: 122 LTQY---SIECLV--RNRSSIKKIF 141
           + +Y   ++E L+    R S K+I+
Sbjct: 110 VMEYFSMTLEELIVQEKRFSQKQIY 134


>gi|108760111|ref|YP_629412.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
 gi|108463991|gb|ABF89176.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
          Length = 172

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDYGI ++   A          ++A    +      K+L+ L++A +V + RG 
Sbjct: 2   LRMSKMTDYGIVLMTELARAEGDTRTTRELAARTRVPLPSASKVLKSLLQAALVVSHRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L RPA ++ + ++V A E    + EC    S    C L   C +    R   +A 
Sbjct: 62  NGGYGLARPAHELPLAELVTALEGPVALTECGVHTSGGAPCELESVCQVRGHWRLINDAI 121

Query: 119 FDVLTQYSIECLV 131
            + L + ++  L+
Sbjct: 122 QEALGRLTLADLI 134


>gi|254702363|ref|ZP_05164191.1| Rrf2 family transcriptional regulator protein [Brucella suis bv.
          3 str. 686]
 gi|260568733|ref|ZP_05839202.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261752927|ref|ZP_05996636.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|54112367|gb|AAN34279.2| RrF2 family protein [Brucella suis 1330]
 gi|260155398|gb|EEW90479.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261742680|gb|EEY30606.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA +I I ++++A + +     C
Sbjct: 62 GGFCLTHPASEIAIGNIIRALDGALAPIAC 91


>gi|83593906|ref|YP_427658.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576820|gb|ABC23371.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 154

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + K TDY + VL+      D      QIA    +    + K+++ LV+  +V + RG  
Sbjct: 3   RINKLTDYAV-VLLVDMARTDKVRAAQQIACDTGVPLPTVAKVMKALVRGNLVISQRGAT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           GG  L RPA +IT+ D+++A E    +  C  +    C L   C +
Sbjct: 62  GGYGLARPACEITVADMIQALEGPVALTACVETTDDACGLETLCPM 107


>gi|71083441|ref|YP_266160.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762136|ref|ZP_01264101.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062554|gb|AAZ21557.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717938|gb|EAS84588.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
          Length = 141

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  L   A  N   P  +  I+    IS  FL +I   L K  IV+++RG
Sbjct: 1   MKLTSKGRYAVMALADLAKFNSVNPVSLRDISLRQGISLDFLEQIFSKLKKYNIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL---- 115
             GG  L +  ++I + +++ A +E     +C    K  C    +  +T  L   L    
Sbjct: 61  TNGGYILNKEPEEIKLANILSAVDEEVKTVQCKKESKKGCNSKTTKCITHNLWDELEVHI 120

Query: 116 NAFFDVLTQYSIECLVRNRS 135
           N FF+   Q +++ L+ N S
Sbjct: 121 NHFFE---QKNLKDLISNSS 137


>gi|84516301|ref|ZP_01003661.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Loktanella vestfoldensis SKA53]
 gi|84509997|gb|EAQ06454.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Loktanella vestfoldensis SKA53]
          Length = 153

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+   D    +++I++   IS  +L ++   L ++G+V++VRG
Sbjct: 1  MKLSTKGRYAMVALADLALQPADALVNLTEISKRQDISLPYLEQLFVKLRRSGLVDSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL RPA +I + +++ A +E+
Sbjct: 61 PGGGYRLSRPASEIRVAEILGAVDET 86


>gi|255034872|ref|YP_003085493.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254947628|gb|ACT92328.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L   A   D       +A +  I+ + + K L  L + G+V +  G+ GG RL +PA
Sbjct: 10  VHILTLLAFSEDEWTSSEYLAGSININPVLVRKELGNLRERGLVASKEGKSGGSRLAKPA 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPL 101
            QI + +V +A  +   + +   S   DCP+
Sbjct: 70  GQIFMSEVYEAVRQKDLLGKGINSPNPDCPV 100


>gi|210614867|ref|ZP_03290366.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
 gi|210150509|gb|EEA81518.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  TK  DY IR++   A+ +     +S I  A  +     +KI + L K G++++ RG 
Sbjct: 4  MLFTKECDYAIRIMR--ALSDGELVSVSNICAAEQLPSAMTYKITRKLEKQGLLKSCRGT 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L R   +I++ D+  A +    + EC 
Sbjct: 62 NGGYCLNRTLSEISLYDICAAVDPDILLLECM 93


>gi|304440321|ref|ZP_07400210.1| iron-sulfur cluster assembly transcription regulator IscR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371073|gb|EFM24690.1| iron-sulfur cluster assembly transcription regulator IscR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG+ + MY  +  + D P  IS IA    +SE +L ++   L  A ++++ R
Sbjct: 1   MKLSTKGRYGL-MAMYRLMESYGDGPQSISNIAMKENLSESYLEQLFSLLRNAKLIKSTR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L +   +I I ++++A E +  ++ C     + CP    C    +L       
Sbjct: 60  GVNGGYSLAKDPKEIKIGEIIEALEGNMELSCC--QKDVVCPKSEECPTRDILDVVQFKI 117

Query: 119 FDVLTQYSIE 128
            +VL   ++E
Sbjct: 118 ENVLDSMTLE 127


>gi|94495944|ref|ZP_01302523.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
          sp. SKA58]
 gi|94424636|gb|EAT09658.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
          sp. SKA58]
          Length = 141

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2  LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSELSREGLVATQRGRD 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L      ++  D+V+ T  S  +  C
Sbjct: 62 GGYWLALAPVDVSYGDIVRLTRGSLALTPC 91


>gi|89095323|ref|ZP_01168241.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Oceanospirillum sp. MED92]
 gi|89080398|gb|EAR59652.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Oceanospirillum sp. MED92]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHEGKGPISLADISERQGISLSYLEQLFAKLRRNELVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R   +I + +V+ A  ES     C  + + DC    +C
Sbjct: 61  PGGGYQLNREQPEINVAEVIDAVNESVDATGC--NRQGDCQGGETC 104


>gi|209966309|ref|YP_002299224.1| rrf2 family protein (putative transcriptional regulator)
          [Rhodospirillum centenum SW]
 gi|209959775|gb|ACJ00412.1| rrf2 family protein (putative transcriptional regulator)
          [Rhodospirillum centenum SW]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + L+K+  + I  ++  A +    P + ++I     I + +L ++LQ LV+AG++  VRG
Sbjct: 2  LRLSKKLVFAIETVLDIAYNAGSAPVQSAEITARQGIPKRYLEQVLQALVRAGVLAGVRG 61

Query: 60 RRGGVRLCRPADQITILDVVK 80
           RGG RL +   +IT+ ++V+
Sbjct: 62 PRGGYRLAKERRRITVGEIVR 82


>gi|220904349|ref|YP_002479661.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868648|gb|ACL48983.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 147

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
          M  + RT YG+R L+  A     P     ++ Q+A    IS  +L +I++ L   GI+  
Sbjct: 1  MRFSTRTRYGLRFLLRLAAQ---PQGSLLQLGQVAREENISSGYLEQIVRALRPMGILRA 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          VRG  GG  L +P  +I + +V +  E       C +
Sbjct: 58 VRGSGGGYALAKPPAEINMEEVFQHLEGEISPVRCLS 94


>gi|114778698|ref|ZP_01453510.1| Iron-sulphur cluster assembly transcription factor IscR
          [Mariprofundus ferrooxydans PV-1]
 gi|114551060|gb|EAU53622.1| Iron-sulphur cluster assembly transcription factor IscR
          [Mariprofundus ferrooxydans PV-1]
          Length = 166

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++      ND P  ++ I+E   IS  +L ++ + L + G+V +VRG
Sbjct: 1  MRLTSKGRYAVSAMVDLNKQQNDGPVTLAAISERQFISLSYLEQLFRRLRENGLVRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A  I+I D+++A  E      C
Sbjct: 61 PGGGYLLAKDAVDISIADIIRAVNEPVRTTMC 92


>gi|134296308|ref|YP_001120043.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134139465|gb|ABO55208.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 179

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|330994153|ref|ZP_08318081.1| Putative HTH-type transcriptional regulator ORF2
          [Gluconacetobacter sp. SXCC-1]
 gi|329758620|gb|EGG75136.1| Putative HTH-type transcriptional regulator ORF2
          [Gluconacetobacter sp. SXCC-1]
          Length = 148

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          RT   I +++  A H      IS   IAE   ++   +  +LQ L ++G++E+VRG RGG
Sbjct: 7  RTMIAILIMLDVAFHAGRNGTISAADIAERAGLARRGIEPLLQTLSRSGLLESVRGPRGG 66

Query: 64 VRLCRPADQITILDVV 79
           RL RP   I + D++
Sbjct: 67 YRLGRPRRDILLADIL 82


>gi|220922635|ref|YP_002497937.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219947242|gb|ACL57634.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 150

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ L++ A +       ++++A A  I + FL  IL  L  AGIV + +G  
Sbjct: 2   LTNKGKYGLKALVHLAGLPPGARIGVAEVAAANNIPKKFLDAILGELRNAGIVHSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RP ++I +   ++  +       C +        DC    +C +  V+ +  N+
Sbjct: 62  GGYALARPPEEIRVGHAIRVLDGPLAPIPCASRTGYRPCEDCADEAACAVRLVMLEVRNS 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   ++   +R+R +
Sbjct: 122 IAGVLDTLTL-AQMRDRPA 139


>gi|194015517|ref|ZP_03054133.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012921|gb|EDW22487.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++          IA +   + + + +I+  L KAG++ T  G+
Sbjct: 1   MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE-----ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
            GG +L R  D IT+LDV KA E     E F + E   S   DCP+  +    L  +L +
Sbjct: 61  -GGSQLNRSEDDITLLDVYKAVEVVDEGELFQIHE---SPNPDCPIGANIQAVLELILCR 116

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A +A   VL +  +  L +
Sbjct: 117 AQSAMEQVLAEIKLSELTQ 135


>gi|82659477|gb|ABB88853.1| putative transcriptional regulator [Azospirillum brasilense]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++K+  + I  ++  A +    P +  +I     I + +L ++LQ LV+ G++  VRG
Sbjct: 2   LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVRDGVLAGVRG 61

Query: 60  RRGGVRLCRPADQITILDVVK-------ATEESFFVAECFASHKIDCPL 101
            RGG RL R   +IT+ ++VK       AT+     A     HK+  PL
Sbjct: 62  PRGGYRLARERRRITLGEIVKVVRSMETATDPIEEPAGSILGHKVVRPL 110


>gi|240169536|ref|ZP_04748195.1| hypothetical protein MkanA1_09496 [Mycobacterium kansasii ATCC
           12478]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M ++ + +Y +R ++  A     P     +   +A+A  I   FL  IL  L    +V +
Sbjct: 1   MRMSAKAEYAVRAMVQLAT---APTGNLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKAL 115
            RGR GG  L RP  +I+I DV++  +              D P  G +  LT V R   
Sbjct: 58  HRGREGGYELARPGSEISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALR 115

Query: 116 NAFFDVLTQYSI 127
            +   VL + ++
Sbjct: 116 ASMRSVLEETTL 127


>gi|302383292|ref|YP_003819115.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193920|gb|ADL01492.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +++IA    IS  +L ++   L K+G+V +VRG  GG RL + A +  + ++V A +E  
Sbjct: 33  LAEIATRQEISLSYLEQLFARLRKSGLVRSVRGPGGGYRLAKTAGETVVSEIVLAVDEPI 92

Query: 87  FVAECFA-SHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLVRNRSSIKK 139
               C A S    C + G   +T  L + L +     L   S+E ++ NR+  ++
Sbjct: 93  RATRCAAHSSPRGCMMAGERCITHNLWEDLGDEIHRYLASVSLEDVIMNRTGPRR 147


>gi|239815132|ref|YP_002944042.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
 gi|319794405|ref|YP_004156045.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
           EPS]
 gi|239801709|gb|ACS18776.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
 gi|315596868|gb|ADU37934.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           EPS]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L R A  IT+ D++ + +E     +C    K +C  +G  G  +T  L  +LN 
Sbjct: 61  PGGGYSLGRKAADITVADIIVSVDEPIDATQC--GGKENC--LGEAGRCMTHELWASLNQ 116

Query: 118 ----FFDVLT-------QYSIECLVRNRSSIKKIFNA 143
               F D +T       Q +    + N+  +K+  +A
Sbjct: 117 RMVEFLDSVTLQKLVDDQIAKGVQIENKPVVKRAISA 153


>gi|330446685|ref|ZP_08310337.1| iscR transcriptional regulator IscR transcriptional dual regulator
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490876|dbj|GAA04834.1| iscR transcriptional regulator IscR transcriptional dual regulator
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  I +  V+ A +ES 
Sbjct: 1   MADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASDIAVGMVIAAVDESV 60

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
              +C    K DC     C LT  L   L+
Sbjct: 61  DATKCHG--KGDCQGGARC-LTHTLWHDLS 87


>gi|149908844|ref|ZP_01897504.1| Rrf2 family protein [Moritella sp. PE36]
 gi|149808118|gb|EDM68059.1| Rrf2 family protein [Moritella sp. PE36]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  +++I+E   IS  +L ++   L +  +V + RG
Sbjct: 1   MRLTSKGRYAVTAMIDLALHADMKPVPLAEISERQSISLSYLEQLFSRLRRKNLVASARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L      I++  ++ A +E+    +C +S    C     C   S+         
Sbjct: 61  PGGGYKLGMLPGDISVGMIIDAVDENVKATKCDSSGG--CNDGKRCLTHSLWDDLSKRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           D L   S+  L+ N + IK+I N
Sbjct: 119 DFLDNISLADLMTN-NEIKQIVN 140


>gi|302551156|ref|ZP_07303498.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces viridochromogenes DSM 40736]
 gi|302468774|gb|EFL31867.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces viridochromogenes DSM 40736]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R V+   A   + P +   +A A  I   FL  IL  L + G+V++ RG
Sbjct: 1  MRISARADYAVRAVVELAARQGEGPVKAEAVATAQDIPHKFLEGILGDLRRGGVVDSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R A +IT+ DV++A +
Sbjct: 61 GGGGYRLAREATEITVADVIRAVD 84


>gi|227874364|ref|ZP_03992548.1| possible transcription regulator [Oribacterium sinus F0268]
 gi|227839772|gb|EEJ50218.1| possible transcription regulator [Oribacterium sinus F0268]
          Length = 140

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y +++++  A HN      + +IA    ISE +L  I++ LVK  ++  +RG
Sbjct: 1  MLISTKGQYALQLMVDLAEHNGQGYIPLKEIAARQDISEKYLESIVKVLVKKELLLALRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
          + GG +L RP  + ++L+++ A E S 
Sbjct: 61 KGGGYKLKRPVAEYSLLEILTALEGSL 87


>gi|160894918|ref|ZP_02075692.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
 gi|156863349|gb|EDO56780.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 14  LMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           ++Y A+++D        ISQ  E   +S+ +L  I + L KA ++E   G  GG RL R 
Sbjct: 1   MVYLAVNHDGSFIPLKEISQHEE---LSQKYLESITRMLSKAHLIEAASGHGGGYRLTRE 57

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNAFFDVLT 123
            ++ ++ +++K TE +     C     + C     C    +   L   +N +FD +T
Sbjct: 58  PEEYSVGEILKLTEGTLAPVSCLKDDSVPCDRSELCYTLPIWQGLADLINNYFDNMT 114


>gi|254774316|ref|ZP_05215832.1| hypothetical protein MaviaA2_06565 [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1  MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          R GG  L RP   I+I DV++
Sbjct: 61 REGGYELARPGKDISIADVLR 81


>gi|159898645|ref|YP_001544892.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891684|gb|ABX04764.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 148

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + +IL  L +AG+V T  G  GG RL R AD+IT+ D+  ATE    + 
Sbjct: 30  IAASVNTNPVVIRRILGMLNRAGLVYTEYGADGGTRLARSADEITLNDIYHATENCRILP 89

Query: 90  ECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVLTQYSIECLV 131
              +S   DC     CG      L+++   A  A   VL   S+  +V
Sbjct: 90  LHASSPNQDC----RCGRTIQPVLSTIFSHAEAAMQQVLANKSLAEVV 133


>gi|184154498|ref|YP_001842838.1| hypothetical protein LAF_0022 [Lactobacillus fermentum IFO 3956]
 gi|260662559|ref|ZP_05863454.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|183225842|dbj|BAG26358.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|260553250|gb|EEX26193.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 141

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R   G+ VL Y  +H D     +++A +   +   + +++  L KAG++ T  G 
Sbjct: 1   MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
                L +  ++IT+LDV +A E+ + +         DCP+
Sbjct: 60  TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPI 100


>gi|17548747|ref|NP_522087.1| hypothetical protein RS00405 [Ralstonia solanacearum GMI1000]
 gi|17430996|emb|CAD17677.1| probable cog1959, predicted transcriptional regulator protein
          [Ralstonia solanacearum GMI1000]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLASAGE-PVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +A E    +A
Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIA 88


>gi|149924361|ref|ZP_01912728.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149814749|gb|EDM74321.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          IAE   I   +L +I+  L KAG V   RG RGG RL +PA +I + DV+
Sbjct: 12 IAEQQGIPSRYLEEIIGELRKAGFVVGKRGPRGGYRLAKPASEIAVADVI 61


>gi|256826980|ref|YP_003150939.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
 gi|256583123|gb|ACU94257.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+ +  A H    P  + + A+   IS  ++ ++   +   G++ + RG
Sbjct: 1   MKISTKGRYALRLAIDVAQHQLAGPVPLRESAKRQGISVKYMEQLAAQMTHGGLLTSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL R    IT  D+++ +E  +    C       CP  G+C        L +A+ 
Sbjct: 61  AHGGYRLARLDTDITAGDILRVSEGGYAPVACLEDDFGICPHRGACETIAFWEGLDQAIE 120

Query: 117 AFFDVLT 123
            + D +T
Sbjct: 121 RYVDSVT 127


>gi|148558060|ref|YP_001257984.1| RrF2 family protein [Brucella ovis ATCC 25840]
 gi|148369345|gb|ABQ62217.1| RrF2 family protein [Brucella ovis ATCC 25840]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ +++ A   D    + S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2  LTKKGKYGLKAMVHLAGVTDGQLVLASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L  PA +I I ++++A + +     C
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIAC 91


>gi|322374098|ref|ZP_08048632.1| putative HTH-type transcriptional regulator YffB [Streptococcus
          sp. C150]
 gi|321277064|gb|EFX54135.1| putative HTH-type transcriptional regulator YffB [Streptococcus
          sp. C150]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          ++E   +S+ +L KI++ L   G+V++VRG+ GG+ L +P  +I+  DV  A E
Sbjct: 31 LSERLGVSDSYLKKIIKLLDNEGLVKSVRGKNGGIALSKPLSKISFYDVFVAIE 84


>gi|269215941|ref|ZP_06159795.1| Rrf2 family protein [Slackia exigua ATCC 700122]
 gi|269130200|gb|EEZ61278.1| Rrf2 family protein [Slackia exigua ATCC 700122]
          Length = 138

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L +RTDY  R++     ++     ++++AE   I   F   I   LV AG++   RG 
Sbjct: 1   MDLNRRTDYACRMIRAAYKNDGKVISVTKVAEQEGIPYAFARSIQNDLVHAGLLRAERGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA---LNA 117
           RGG+ L       T+L V++  +    +  C    +  C     C   +V + A   L A
Sbjct: 61  RGGLALACDPSTTTLLHVLECVQGPISMTACTNDERF-CDRRDGCEFHAVWKHAESMLKA 119

Query: 118 FFDVLT 123
           ++  +T
Sbjct: 120 YYASIT 125


>gi|260587960|ref|ZP_05853873.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
 gi|331082470|ref|ZP_08331596.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260541487|gb|EEX22056.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
 gi|330400956|gb|EGG80557.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+  DYG+R++   A+ N     + QI E   ++  F++KIL+ L K  IV++ RG 
Sbjct: 1  MLITRECDYGVRIIR--ALANGDKMCVHQICEQEDLTPAFVYKILKKLEKKEIVKSFRGS 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L     ++T+LD+  A +  F++ EC    K
Sbjct: 59 NGGYALKSSVKELTLLDIYLAVDPEFYMIECMNPQK 94


>gi|222055544|ref|YP_002537906.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564833|gb|ACM20805.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ L+Y +      P  I+ +AE   I + FL  IL  L   GI+ + +G+ 
Sbjct: 2   ISKKTKYALKALIYLSRTKKGEPVLIADLAEDEKIPKKFLELILLTLKNNGILHSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I++  V++  E        V+E   S   +C    +CG+  V++   +A
Sbjct: 62  GGYSLGKLPREISMGSVIRMLEGPLAPVPCVSETAYSKCTECEDETTCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIE 128
              +L   +++
Sbjct: 122 ITQILDHTTLQ 132


>gi|77165193|ref|YP_343718.1| hypothetical protein Noc_1716 [Nitrosococcus oceani ATCC 19707]
 gi|254434008|ref|ZP_05047516.1| rrf2 family protein (putative transcriptional regulator)
          [Nitrosococcus oceani AFC27]
 gi|76883507|gb|ABA58188.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
          ATCC 19707]
 gi|207090341|gb|EDZ67612.1| rrf2 family protein (putative transcriptional regulator)
          [Nitrosococcus oceani AFC27]
          Length = 141

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + R  Y I  +M  A+     +  +  IA+   IS  +L +I   L   G+VE +RG
Sbjct: 1  MRFSNRPRYAISAMMNLALVKQQKSITLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L R A++ITI +++ A ++
Sbjct: 61 PGGGYHLTRAAEKITIAEIIAAVDK 85


>gi|34496550|ref|NP_900765.1| hypothetical protein CV_1095 [Chromobacterium violaceum ATCC 12472]
 gi|34102404|gb|AAQ58770.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 164

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L +A +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMREEGGPVTLAGISERQSISLSYLEQLFGKLRRAELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L +    I++ D++ A +E     +C      +C     C +T  L   LN   
Sbjct: 61  PGGGYTLAKQICDISVADIIVAVDEPVDATQCGGRE--NCRGSQRC-MTHDLWTNLNVTI 117

Query: 119 FDVLTQYSIECLVRNR 134
           FD L++ S+  LV  +
Sbjct: 118 FDYLSKVSLASLVEEQ 133


>gi|146279770|ref|YP_001169928.1| hypothetical protein Rsph17025_3759 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558011|gb|ABP72623.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 158

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A       R   I  IA      + FL  IL  +  AG + ++RG
Sbjct: 2   ITQKMKYALKALMVLAEERAGERRALRIEDIAARSGTPKRFLEHILLDIRNAGFIASLRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   QI + D+++  +       C +        DC    +C +  V  +  
Sbjct: 62  RSGGYLLIKEPSQIPLSDLLRMIDGPIAPLPCLSRRSYQRCEDCTDEAACRIRKVFAEIF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LVR  ++ ++I  A
Sbjct: 122 WSYLLLIESLTLADLVRTPAAAEQIMAA 149


>gi|298290810|ref|YP_003692749.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927321|gb|ADH88130.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ ++Y A I         +IA A  I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTNKGKYGLKAMLYLARIEPGSSAMGQEIATANNIPKKFLDAILLELRNAGMLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  +++  +       C +        DC  + +C +   + K  +A
Sbjct: 62  GGYALAKTPREIRIGHIIRTLDGPLAPISCASKSAYVPCQDCEDLATCSVRITMSKVRDA 121

Query: 118 FFDVLTQYSIECLV 131
             ++L   S++ ++
Sbjct: 122 MSEILDGMSLQDMI 135


>gi|227514141|ref|ZP_03944190.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087512|gb|EEI22824.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R   G+ VL Y  +H D     +++A +   +   + +++  L KAG++ T  G 
Sbjct: 3   MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
                L +  ++IT+LDV +A E+ + +         DCP+
Sbjct: 62  TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPI 102


>gi|313888209|ref|ZP_07821883.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845899|gb|EFR33286.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 131

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG+ + MY    N    P  +  IA+   +SE +L ++   L KA +V+++R
Sbjct: 1   MKLSTKGRYGL-MAMYNLKENMGKGPIALKDIAKDENLSESYLEQLFTLLRKADLVKSIR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           G  GG  L R    I I +++ A E    ++ C     + C     C    +L K
Sbjct: 60  GAGGGYVLARDPQNIAIGEIINALEGDISLSCCDLGKNVACGKQADCATRDILSK 114


>gi|213965359|ref|ZP_03393555.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
           amycolatum SK46]
 gi|213951975|gb|EEB63361.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
           amycolatum SK46]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT  +D  +RV+   A+    P R    +++AE+   S   + K++  LV+ G ++ V
Sbjct: 1   MQLTLFSDLSLRVITLMAMGE--PGRKYTAAEVAESLNASRAHVSKVVSRLVELGFLDAV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           +GR GG+ L   A   ++  +++ T E+  V +C  +   DCPL+ +C
Sbjct: 59  KGRNGGIYLRDSATDKSVGKLLR-TLENNEVVDCVGT---DCPLLPTC 102


>gi|73667036|ref|YP_303052.1| BadM/Rrf2 family transcriptional regulator [Ehrlichia canis str.
           Jake]
 gi|72394177|gb|AAZ68454.1| transcriptional regulator, BadM/Rrf2 family [Ehrlichia canis str.
           Jake]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 1   MHLTKRTDYGIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y +  ++      Y    ++ P ++S IA++  +SE +L +I+  L K G+V
Sbjct: 1   MLITTRLRYAVMFMVSLAQEYYILKGSNQPKKMSHIADSQSLSEGYLEQIIAKLKKQGLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113
            + +G  GG  L +  + IT+  ++++  E+  +  C  ++ I C P    C   ++   
Sbjct: 61  NSTKGPGGGYFLNKSPNIITLNLILESIGENIKITRCKNNNVIRCLPNNAKCITHNLWDN 120

Query: 114 ALNAFFDVLTQYSIECLVRN--RSSIK 138
             N     L   S+E ++ N  + SIK
Sbjct: 121 IGNYIKKYLNSISLEDIINNNFKHSIK 147


>gi|294782082|ref|ZP_06747408.1| transcriptional regulator superfamily [Fusobacterium sp.
          1_1_41FAA]
 gi|294480723|gb|EFG28498.1| transcriptional regulator superfamily [Fusobacterium sp.
          1_1_41FAA]
          Length = 141

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L    +Y  R+L Y ++ +   +RI   ++IAE   I  LF  ++L+ + K G+++  
Sbjct: 1  MKLKNEIEYVFRILNYLSLQD--KDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIF 58

Query: 58 RGRRGGVRLCRPADQITILDVV 79
          +G  GG +L +    IT+ D V
Sbjct: 59 KGANGGYKLNKDPKDITLRDAV 80


>gi|209522489|ref|ZP_03271083.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          H160]
 gi|209497074|gb|EDZ97335.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          H160]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QIT+LDV +A E+    A+ F  H+
Sbjct: 61 GGGALLARRPEQITLLDVYRAVED----AQLFGVHR 92


>gi|197118861|ref|YP_002139288.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197088221|gb|ACH39492.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    + + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +IT    ++  E       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYFLGRHPGKITFGQAIRVMEGPLAPVPCVSETAYAKCTECENELTCGIRLVMKDVRDA 121

Query: 118 FFDVL 122
              +L
Sbjct: 122 MAVIL 126


>gi|300692019|ref|YP_003753014.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum PSI07]
 gi|299079079|emb|CBJ51741.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum PSI07]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG  
Sbjct: 1   MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVLRK 113
           GG  L R AD +T+ D++ A +E     +C           G+CG        +T  L  
Sbjct: 61  GGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCGGEEHSGRCMTHDLWA 112

Query: 114 ALNA-FFDVLTQYSIECLV 131
            LN    + L   S++ LV
Sbjct: 113 TLNQKMVEYLDSVSLQNLV 131


>gi|260433735|ref|ZP_05787706.1| iron-sulfur cluster assembly transcription factor IscR
          [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417563|gb|EEX10822.1| iron-sulfur cluster assembly transcription factor IscR
          [Silicibacter lacuscaerulensis ITI-1157]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+   D    + +I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIALQPADALVTLGEISERQDISLPYLEQLFVKLRRADLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL RPA +I +++V+ A +E+
Sbjct: 61 PGGGYRLARPASEIRVVEVLAAVDET 86


>gi|210632890|ref|ZP_03297589.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
 gi|210159358|gb|EEA90329.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
          Length = 150

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + ++AE   IS  +L ++++PL+ AG++ +VRG+ GG  L  PA  I   D+++A E   
Sbjct: 36  LREVAEREQISLKYLEQLVRPLMNAGLLRSVRGKGGGYVLAVPAQDIRAGDILRAAEGER 95

Query: 87  FVAECFASHKIDCPLVGSCGLTSV---------LRKALNAFFDVLT 123
               C         L G+CG + +         L + + A+ D +T
Sbjct: 96  STVACEG-------LEGTCGRSDLCSTVKFWTGLEETIEAYVDGVT 134


>gi|167768072|ref|ZP_02440125.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
 gi|317499363|ref|ZP_07957631.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710401|gb|EDS20980.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
 gi|291561069|emb|CBL39869.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SSC/2]
 gi|316893332|gb|EFV15546.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R++   A+H+  D+   +  I+    IS  +L +I++ L   G ++++R
Sbjct: 1   MKISTKGRYAVRLMYDLAMHHTGDWIA-LKDISRRQEISVKYLEQIVRQLSIRGYLKSLR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L R     TI +++K TE S     C       C     C    +        
Sbjct: 60  GPKGGYQLSRDPKDYTIYEILKITEGSLQPVACLDDKVNQCERYHECPTIEIWEGLGQVI 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            + L+  ++E +V N++ IK
Sbjct: 120 EEYLSGITLEDVV-NKARIK 138


>gi|157370170|ref|YP_001478159.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321934|gb|ABV41031.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           F+ K++ PL K GI+ +  GR G + L RPA+QIT+ D+  +  E   +          C
Sbjct: 41  FIRKLMVPLTKNGIIVSTLGRNGSIHLGRPAEQITLRDIYLSVIEDKRIWAARPEGPARC 100

Query: 100 PLVGSCG---LTSVLRKALNAFFDVLTQYSI 127
            LV +       SV+ +A  A  +VL  Y++
Sbjct: 101 -LVSANACWYFKSVVNEAEEASLNVLAGYTV 130


>gi|189347463|ref|YP_001943992.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola
          DSM 245]
 gi|189341610|gb|ACD91013.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
          DSM 245]
          Length = 168

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LTK TDY IR L+     N        IA    I   FL ++LQ +++ G+V +  G  G
Sbjct: 4  LTKNTDYAIRALLSLGSANGGYLSARSIAGEQDIPYQFLRRLLQEMIRHGLVVSKEGAGG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          G  L R    I + ++++  +    V+EC    +I
Sbjct: 64 GFMLARNPHDIRVRELIEIFQGRVQVSECLFRKQI 98


>gi|72160826|ref|YP_288483.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX]
 gi|71914558|gb|AAZ54460.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX]
          Length = 155

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD  +R++M  A+  +       +A    +      K +  L + G+VE  RGR
Sbjct: 1   MRLTTFTDLSLRIVMRLAVAGEETLTTRSVAGMLAVPYTHAAKAVARLSEMGLVEARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL       T+  +V+  E S  V  C       CPL  +C L   LR+A  AFF 
Sbjct: 61  GGGLRLTPAGRAATVGSIVRELEGSKDVVAC--EDDPPCPLRAACRLRGELRRAQEAFFA 118

Query: 121 VLTQYSIECLV 131
            L + ++E LV
Sbjct: 119 ALDEVTVESLV 129


>gi|332878892|ref|ZP_08446607.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683243|gb|EGJ56125.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 148

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y A ++    RI   ++A+A  I   FL KILQ LV+  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAANSSESKRIGVKEVADALHIPLPFLAKILQALVRKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     +  ++ VV+   E+    +C  S +  C     C L + ++   + F  
Sbjct: 62  GGGFWLTDDEKEQPLMRVVEQIGEADKFIKCAMSLR-PCSDEKPCPLHTSVQPFRDNFRK 120

Query: 121 VLTQYSI 127
            LT+ SI
Sbjct: 121 ELTENSI 127


>gi|284036740|ref|YP_003386670.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283816033|gb|ADB37871.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 153

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K + Y IR L Y A+ +   N+I   ++A    + + FL KI+Q LV+  I+ + +G 
Sbjct: 2   ISKTSGYAIRGLAYLALKSTAVNKIGVHELAAELNVPQPFLGKIMQGLVRRDIISSTKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115
            GG           I+DVV A +       CF      + +  CP          L + +
Sbjct: 62  NGGFFTNERTLTTPIIDVVDAIDGLGMFRRCFLGLPECNSEKPCP----------LHQHV 111

Query: 116 NAFFDVLTQYSIECLV 131
             F D L Q+S+E L 
Sbjct: 112 IGFRDSL-QHSLETLT 126


>gi|167747110|ref|ZP_02419237.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
 gi|167654070|gb|EDR98199.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
          Length = 150

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++ +  Y +R+L   A HN      +  +++   IS  +L +I++ L   G ++++RG
Sbjct: 6   VKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
            RGG +L +   + TI DV++ TE S     C       C     C       GL  V+R
Sbjct: 66  PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 125

Query: 113 KALNA 117
             L +
Sbjct: 126 DYLGS 130


>gi|307324043|ref|ZP_07603252.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
 gi|306890492|gb|EFN21469.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          IA A  I   FL  IL  L + G+V + RG  GG RL RPAD I+I +V++  +
Sbjct: 31 IAGAQGIPHKFLEGILGDLRRGGLVASQRGGNGGYRLARPADTISIAEVIRVVD 84


>gi|210611516|ref|ZP_03288936.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
 gi|319936514|ref|ZP_08010929.1| cysteine desulfurase [Coprobacillus sp. 29_1]
 gi|210151963|gb|EEA82970.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
 gi|319808406|gb|EFW04961.1| cysteine desulfurase [Coprobacillus sp. 29_1]
          Length = 135

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RVL+  A  +      + +IA+   ISE +L +I++ LV  G++  + G+ 
Sbjct: 2   ISTKGRYALRVLIDLAEQDTTTYVPLKEIAKRQGISEKYLQQIVKILVGKGLLTGISGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL    ++  + ++++  E S     C A     C     C    + +K  N   D 
Sbjct: 62  GGYRLTASPEEYNVGEILELMEGSLTPVACLAPDTKTCSRSSHCKTLPMWKKFDNLVHDY 121

Query: 122 LTQYSIECLVRN 133
               +I  LV  
Sbjct: 122 FFHITIADLVNG 133


>gi|297566671|ref|YP_003685643.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
           DSM 9946]
 gi|296851120|gb|ADH64135.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
           DSM 9946]
          Length = 174

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+    Y  + L Y       P R     +++ A  +   +L +IL  LV  G+V + 
Sbjct: 1   MRLSATDIYAFKALGYLGTQP--PGRYVGSEELSRATGVRRTYLVRILAALVGQGLVASK 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115
           +G  GG  L RP  +I + DV++A +       C +      C   G C     +  K  
Sbjct: 59  KGAGGGYALPRPPQEINLRDVIRAVDGPIAPLSCVSLKWPKACGEEGRCHARNQIWIKVR 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +A  + L++ S+  L  +
Sbjct: 119 DAVLEALSRVSVADLAED 136


>gi|49080808|gb|AAT50060.1| PA3815 [synthetic construct]
          Length = 164

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES     C    + DC    +C
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104


>gi|150016622|ref|YP_001308876.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903087|gb|ABR33920.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 142

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  C         +  I+E   ISE +L +I   L K GI+   +G
Sbjct: 1   MKISTKGRYGLRALIDICIFSVSEMVTVKSISERQGISERYLEQIFSSLRKGGIINAKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + + + TI D++   E    + +   + + +     S  L +V+   +  FF
Sbjct: 61  AQGGYFLAKSSREFTIGDILNVLEGDLLLIDI-ENDENEIENFMSENLWNVINNKIINFF 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + +T   +E LV +     K
Sbjct: 120 NSIT---LEDLVNDYKKYNK 136


>gi|168182103|ref|ZP_02616767.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|237793605|ref|YP_002861157.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674586|gb|EDT86547.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|229263550|gb|ACQ54583.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 143

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L +AG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115
            GG  L +  DQIT+LDV +A  E     E F  H    I+CP+  +    +  VL  A 
Sbjct: 61  -GGAYLLKDLDQITLLDVYRAV-EVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQ 118

Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139
            A   VL   ++E +V   R  IKK
Sbjct: 119 EAMEQVLENVTMEYIVTGIRKKIKK 143


>gi|56479101|ref|YP_160690.1| iron-sulphur cluster assembly transcription factor IscR
           [Aromatoleum aromaticum EbN1]
 gi|56315144|emb|CAI09789.1| Iron-sulphur cluster assembly transcription factor IscR
           [Aromatoleum aromaticum EbN1]
          Length = 160

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A    + P  ++ IAE   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLASRQTEGPVTLAGIAERQKISLSYLEQLFGKLRRHKLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R   +IT+ DV+ A +E     +C      +C     C LT  L   LN   
Sbjct: 61  PGGGYRLARDMSRITVADVIVAVDEPLDATQCGGRQ--NCHDEQRC-LTHDLWANLNKRM 117

Query: 119 FDVLTQYSIECLV 131
           ++ L   ++  LV
Sbjct: 118 YEYLDSVTLAALV 130


>gi|254242506|ref|ZP_04935828.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195884|gb|EAZ59947.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES     C    + DC    +C
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104


>gi|152976812|ref|YP_001376329.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025564|gb|ABS23334.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAKAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPANITAGDVIRVLEGPISVVEMLEEEE--------PAQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|331084569|ref|ZP_08333668.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401000|gb|EGG80597.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 141

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR ++Y        +  ++I+    I   +L K+L  L KA  + +  G 
Sbjct: 1   MQLNVTTDYAIRTVLYLGQCKKLAS-ATEISNEMKIPRGYLEKVLSKLKKAEYISSDLGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGL----TSVLRKAL 115
           RGG RL    ++IT+ DV++  E +  +  C       +   V  C +      V +K  
Sbjct: 60  RGGYRLNMTLEEITLGDVIRLMENATKINRCLEEDMFCNRKAVDYCAVRRYYEKVQKKLE 119

Query: 116 NAFFDV 121
           N FF +
Sbjct: 120 NHFFTI 125


>gi|225573651|ref|ZP_03782406.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038990|gb|EEG49236.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
           10507]
          Length = 134

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRV++  A  +      ++ IA+   IS  +L  I+  L K G + +  G
Sbjct: 1   MKISTKGRYAIRVMLDLAQQDPKAYTSVASIAQRQEISVKYLEMIISILNKGGYLRSQMG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
           ++GG +L R A   T+ ++++ TE S     C    +  C    +C LT  + K L+   
Sbjct: 61  KKGGYQLARSAQDYTVGEILRLTEGSLAPVSCLECEEEACGRSMTC-LTLPMWKELDRRI 119

Query: 117 -AFFDVLT 123
             + D +T
Sbjct: 120 GEYLDSVT 127


>gi|300704652|ref|YP_003746255.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CFBP2957]
 gi|299072316|emb|CBJ43650.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CFBP2957]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG  
Sbjct: 1   MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
           GG  L R AD +T+ D++ A +E     +C           G+CG
Sbjct: 61  GGYSLARRADDVTVADIIIAVDEPLDATQCGGK--------GNCG 97


>gi|294668749|ref|ZP_06733842.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291309266|gb|EFE50509.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 147

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  +   +++ I+E   IS  +L ++   L +A +V+++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQNGAVKLNDISERQNISLSYLEQLFGKLRRAKLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L   AD+I+I  ++ A E+      C  S K +C     C    L   L + +N
Sbjct: 61  PGGGYVLAAAADEISIAQIITAAEDRLDATLC--SSKANCHNGAPCLTHDLWENLNRTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  ++
Sbjct: 119 QYLSSVTLQTV 129


>gi|30022474|ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|30264468|ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42783527|ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47529926|ref|YP_021275.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566586|ref|ZP_00237408.1| RRF2 family protein [Bacillus cereus G9241]
 gi|49187289|ref|YP_030541.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49478626|ref|YP_038448.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141107|ref|YP_085720.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65321765|ref|ZP_00394724.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|118479556|ref|YP_896707.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|167636502|ref|ZP_02394799.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167638649|ref|ZP_02396925.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170689641|ref|ZP_02880823.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|177653236|ref|ZP_02935488.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190566990|ref|ZP_03019906.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034450|ref|ZP_03101859.1| rrf2 family protein [Bacillus cereus W]
 gi|196039239|ref|ZP_03106545.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|196044851|ref|ZP_03112085.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|206969679|ref|ZP_03230633.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206976049|ref|ZP_03236959.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217961888|ref|YP_002340458.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218235656|ref|YP_002369208.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218899567|ref|YP_002447978.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218905593|ref|YP_002453427.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222097841|ref|YP_002531898.1| transcriptional regulator [Bacillus cereus Q1]
 gi|225866380|ref|YP_002751758.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227817177|ref|YP_002817186.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|228902926|ref|ZP_04067067.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
 gi|228910234|ref|ZP_04074052.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
 gi|228917032|ref|ZP_04080592.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923150|ref|ZP_04086441.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929443|ref|ZP_04092464.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935719|ref|ZP_04098532.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941566|ref|ZP_04104115.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948112|ref|ZP_04110396.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954683|ref|ZP_04116706.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960670|ref|ZP_04122315.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967473|ref|ZP_04128502.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974496|ref|ZP_04135063.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981090|ref|ZP_04141391.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
 gi|228987650|ref|ZP_04147764.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228993136|ref|ZP_04153058.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
 gi|228999185|ref|ZP_04158767.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
 gi|229006733|ref|ZP_04164367.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
 gi|229032048|ref|ZP_04188031.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
 gi|229048106|ref|ZP_04193679.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
 gi|229071907|ref|ZP_04205118.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
 gi|229081663|ref|ZP_04214158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
 gi|229086961|ref|ZP_04219118.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
 gi|229093469|ref|ZP_04224572.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
 gi|229098870|ref|ZP_04229806.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
 gi|229105032|ref|ZP_04235686.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
 gi|229111871|ref|ZP_04241417.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
 gi|229117895|ref|ZP_04247257.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
 gi|229123939|ref|ZP_04253131.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
 gi|229129679|ref|ZP_04258647.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229141135|ref|ZP_04269677.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
 gi|229146969|ref|ZP_04275333.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229152602|ref|ZP_04280791.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
 gi|229158014|ref|ZP_04286085.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
 gi|229163347|ref|ZP_04291299.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
 gi|229175072|ref|ZP_04302590.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
 gi|229180674|ref|ZP_04308014.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
 gi|229186638|ref|ZP_04313799.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
 gi|229192610|ref|ZP_04319571.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
 gi|229198525|ref|ZP_04325229.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
 gi|229600467|ref|YP_002868685.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254684154|ref|ZP_05148014.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724675|ref|ZP_05186458.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254736501|ref|ZP_05194207.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741539|ref|ZP_05199226.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254751362|ref|ZP_05203399.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254757694|ref|ZP_05209721.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|296504891|ref|YP_003666591.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|300119220|ref|ZP_07056917.1| rrf2 family protein [Bacillus cereus SJ1]
 gi|301055906|ref|YP_003794117.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|29898032|gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|30259126|gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42739456|gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47505074|gb|AAT33750.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556616|gb|EAL14948.1| RRF2 family protein [Bacillus cereus G9241]
 gi|49181216|gb|AAT56592.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49330182|gb|AAT60828.1| probable transcriptional regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974576|gb|AAU16126.1| probable transcriptional regulator [Bacillus cereus E33L]
 gi|118418781|gb|ABK87200.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|167513497|gb|EDR88867.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167528095|gb|EDR90892.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170666411|gb|EDT17192.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172081518|gb|EDT66590.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190561981|gb|EDV15950.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992992|gb|EDX56951.1| rrf2 family protein [Bacillus cereus W]
 gi|196024339|gb|EDX63012.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|196029866|gb|EDX68467.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206735367|gb|EDZ52535.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206745801|gb|EDZ57198.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217066112|gb|ACJ80362.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218163613|gb|ACK63605.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218539499|gb|ACK91897.1| rrf2 family protein [Bacillus cereus AH820]
 gi|218541342|gb|ACK93736.1| rrf2 family protein [Bacillus cereus G9842]
 gi|221241899|gb|ACM14609.1| probable transcriptional regulator [Bacillus cereus Q1]
 gi|225789058|gb|ACO29275.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227007748|gb|ACP17491.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|228585028|gb|EEK43142.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
 gi|228590917|gb|EEK48775.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
 gi|228596897|gb|EEK54556.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228602819|gb|EEK60300.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
 gi|228608440|gb|EEK65744.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
 gi|228620128|gb|EEK77002.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
 gi|228625467|gb|EEK82223.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
 gi|228630863|gb|EEK87503.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
 gi|228636568|gb|EEK93034.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228642413|gb|EEK98702.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228653796|gb|EEL09666.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228659241|gb|EEL14889.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
 gi|228665552|gb|EEL21032.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
 gi|228671627|gb|EEL26925.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
 gi|228678409|gb|EEL32632.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
 gi|228684543|gb|EEL38485.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
 gi|228689940|gb|EEL43744.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
 gi|228696337|gb|EEL49165.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
 gi|228701667|gb|EEL54158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
 gi|228711203|gb|EEL63167.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
 gi|228723261|gb|EEL74633.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
 gi|228729293|gb|EEL80287.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
 gi|228754594|gb|EEM04005.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
 gi|228760802|gb|EEM09766.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
 gi|228766595|gb|EEM15236.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
 gi|228772110|gb|EEM20562.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778631|gb|EEM26897.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
 gi|228785213|gb|EEM33225.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792250|gb|EEM39823.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799034|gb|EEM46006.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805010|gb|EEM51606.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811470|gb|EEM57807.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228818122|gb|EEM64198.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823957|gb|EEM69776.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830231|gb|EEM75847.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836529|gb|EEM81879.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842639|gb|EEM87727.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849398|gb|EEM94234.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
 gi|228856710|gb|EEN01229.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
 gi|229264875|gb|ACQ46512.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|296325943|gb|ADH08871.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|298723440|gb|EFI64185.1| rrf2 family protein [Bacillus cereus SJ1]
 gi|300378075|gb|ADK06979.1| probable transcriptional regulator [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328301|gb|ADY23561.1| putative transcriptional regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326942180|gb|AEA18076.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 138

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPANITAGDVIRVLEGPISVVEMIEEEE--------PAQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|159038768|ref|YP_001538021.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157917603|gb|ABV99030.1| transcriptional regulator, BadM/Rrf2 family [Salinispora
          arenicola CNS-205]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          +Q+A    +   +L K LQ LVKAG++    G  GG RL +PA +IT+L +V+A
Sbjct: 29 AQLARYYDLPAPYLAKQLQALVKAGVLVATTGPTGGFRLAQPASEITLLRIVEA 82


>gi|15599010|ref|NP_252504.1| IscR [Pseudomonas aeruginosa PAO1]
 gi|107103335|ref|ZP_01367253.1| hypothetical protein PaerPA_01004404 [Pseudomonas aeruginosa PACS2]
 gi|116051840|ref|YP_789317.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987595|ref|YP_001346682.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           aeruginosa PA7]
 gi|218889901|ref|YP_002438765.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
 gi|254236719|ref|ZP_04930042.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387669|ref|ZP_06877144.1| putative Rrf2 family protein [Pseudomonas aeruginosa PAb1]
 gi|313109233|ref|ZP_07795201.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
 gi|9949989|gb|AAG07202.1|AE004799_8 IscR [Pseudomonas aeruginosa PAO1]
 gi|115587061|gb|ABJ13076.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168650|gb|EAZ54161.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|150962753|gb|ABR84778.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           aeruginosa PA7]
 gi|218770124|emb|CAW25886.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
 gi|310881703|gb|EFQ40297.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             GG +L R    I +  V+ A  ES     C    + DC    +C
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQG--QGDCHSGDTC 104


>gi|206560561|ref|YP_002231326.1| putative transcriptional regulator protein [Burkholderia
           cenocepacia J2315]
 gi|198036603|emb|CAR52500.1| putative transcriptional regulator protein [Burkholderia
           cenocepacia J2315]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|254251966|ref|ZP_04945284.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
 gi|124894575|gb|EAY68455.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|78066902|ref|YP_369671.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|115352215|ref|YP_774054.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|172061082|ref|YP_001808734.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|77967647|gb|ABB09027.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
 gi|115282203|gb|ABI87720.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
 gi|171993599|gb|ACB64518.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
 gi|325523676|gb|EGD01947.1| putative transcriptional regulator protein [Burkholderia sp. TJI49]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|134099141|ref|YP_001104802.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291009886|ref|ZP_06567859.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133911764|emb|CAM01877.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            +IA +   + + + ++L  +  AG+V + RG   G  L RP +++T+ DV +A E +  
Sbjct: 31  ERIAGSVNTNPVVIRRLLGRMRDAGLVHSRRGAEAGWVLARPLEEMTLRDVYEAIEPAPL 90

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
            A   +   +DCP +GS G+  V+R A  A  +   +  +EC+ 
Sbjct: 91  FAVHRSEPNLDCP-IGS-GIRPVMRLAY-ARVEQAVRAELECIT 131


>gi|260062075|ref|YP_003195155.1| rrf2 family protein [Robiginitalea biformata HTCC2501]
 gi|88783637|gb|EAR14808.1| rrf2 family protein (putative transcriptional regulator)
          [Robiginitalea biformata HTCC2501]
          Length = 144

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 9/84 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K  +YGIR ++Y A  +    R+S  +IA+A      F  KILQ L + G+V++V+G 
Sbjct: 2  FSKACEYGIRAVVYIAHKSLEGQRVSLKEIADAIDSPVAFTAKILQQLSRNGLVDSVKGA 61

Query: 61 RGG-------VRLCRPADQITILD 77
           GG       +R  R AD ++++D
Sbjct: 62 SGGFEMSEGRIREVRLADIVSVVD 85


>gi|119385683|ref|YP_916738.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
          denitrificans PD1222]
 gi|119376278|gb|ABL71042.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
          denitrificans PD1222]
          Length = 152

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L+  AI   D    +++I++   IS  +L ++   L +AG+V++VRG
Sbjct: 1  MKLSTKGRYAMVALVDLAIAKGDELTSLAEISKRQDISLPYLEQLFVRLRRAGLVDSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL +  + I + DV++A +E+
Sbjct: 61 PGGGYRLAKAPETIRVADVLEAVDET 86


>gi|146311547|ref|YP_001176621.1| BadM/Rrf2 family transcriptional regulator [Enterobacter sp. 638]
 gi|145318423|gb|ABP60570.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
          Length = 159

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV-VKATEESFFVAECFASHKID 98
           F+ K++ PL + GI+ +  GR G + L RPAD+IT+ D+ +  TE+    A      + D
Sbjct: 41  FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYISVTEDKKLWAS-----RPD 95

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            P    C +++       +  D   Q S+E L R+
Sbjct: 96  VP--ARCVVSANACWYFKSIADEAEQASLEVLARH 128


>gi|157692447|ref|YP_001486909.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157681205|gb|ABV62349.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IAE+   +   + K++  L +A ++E  RG  GG  L RPA++IT+LDV +A + S    
Sbjct: 30  IAESVNSNPAIVRKMMAMLKRADLIEIRRGV-GGAYLKRPAEEITLLDVYRAVDVSED-E 87

Query: 90  ECFASHK--IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
           E F  H+  I CP+  +    L S L++A  A  + L Q +I+ L+
Sbjct: 88  ELFNFHQPVIACPIGQAMDTRLRSELKEAQAALENHLKQVTIQQLL 133


>gi|257065317|ref|YP_003144989.1| rrf2 family protein, putative transcriptional regulator [Slackia
          heliotrinireducens DSM 20476]
 gi|256792970|gb|ACV23640.1| rrf2 family protein, putative transcriptional regulator [Slackia
          heliotrinireducens DSM 20476]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y +R L+  A H D     +  +AE   +S+ +L +I+  L  +GI++  RG
Sbjct: 1  MLVSTKGRYALRFLLDLAQHKDAGVISLQAVAERQNVSKKYLERIVSLLSPSGILKITRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
           +GG +L R  + IT+ +++  TE  F
Sbjct: 61 YQGGYQLARDPELITVAEILMLTEGGF 87


>gi|157827110|ref|YP_001496174.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii OSU 85-389]
 gi|157802414|gb|ABV79137.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii OSU 85-389]
          Length = 128

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
           D P  +++I+    IS  +L +I   L KA +V+ +RG  GG  L    ++I I +++ A
Sbjct: 12  DEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRGPNGGYILIGKLEEIKISNIMDA 71

Query: 82  TEESFFVAECF-------ASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
             E+F +  C+       AS+ I C    S  L   L K +  +F+ ++
Sbjct: 72  VNENFIMTGCYKKSIKNCASNTIKC---NSHKLWKGLGKHIRDYFENIS 117


>gi|116690148|ref|YP_835771.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|161524318|ref|YP_001579330.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|170701998|ref|ZP_02892918.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|170733480|ref|YP_001765427.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|189350926|ref|YP_001946554.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198432|ref|ZP_03571478.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2M]
 gi|221208891|ref|ZP_03581888.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2]
 gi|221214778|ref|ZP_03587747.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD1]
 gi|254247783|ref|ZP_04941104.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
 gi|116648237|gb|ABK08878.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
 gi|124872559|gb|EAY64275.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
 gi|160341747|gb|ABX14833.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans ATCC 17616]
 gi|169816722|gb|ACA91305.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
 gi|170133088|gb|EDT01496.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|189334948|dbj|BAG44018.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165317|gb|EED97794.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD1]
 gi|221171174|gb|EEE03624.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2]
 gi|221182364|gb|EEE14765.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2M]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|294345242|emb|CBL51475.1| putative nitric oxide reductase regulator [Thermus thermophilus]
          Length = 141

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          +IAE       F+ K+LQ L KAG+VE+  GR+GGV    P  +I++L V++A
Sbjct: 31 EIAERLKAPPAFMAKVLQKLAKAGLVESRVGRKGGVWPKLPPGEISLLKVMEA 83


>gi|295109399|emb|CBL23352.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
          A2-162]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  + V++  AI+ +     + IAE+   +  F+ +++  L KAG++ +V G    
Sbjct: 5  TKLSD-TVHVMVLIAINKEKSLSSASIAESVHTNPGFVRQLMLKLKKAGLMTSVAGH-AR 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L +PADQIT+LD+ KA E
Sbjct: 63 PSLSKPADQITLLDIYKAVE 82


>gi|291286176|ref|YP_003502992.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883336|gb|ADD67036.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 154

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 6   RTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +T Y ++ L Y A  HN     IS IAE   I + FL  IL  L   G + +  G+ GG 
Sbjct: 5   KTVYALKALQYLAESHNQGNVMISVIAENEGIPKKFLETILLTLKNEGFLTSRIGKGGGY 64

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKALNAF 118
           +L    ++I + D++ A E +  +  C A H+        C     CG   +L K     
Sbjct: 65  KLALAPNEINLKDIISALEGNIALIPC-AVHETGEKKCDQCRDYELCGTRLILTKISERL 123

Query: 119 FDVLTQYSIECLV 131
            DVL+  ++  ++
Sbjct: 124 ADVLSSNTLADMI 136


>gi|163746291|ref|ZP_02153649.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanibulbus indolifex HEL-45]
 gi|161380176|gb|EDQ04587.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanibulbus indolifex HEL-45]
          Length = 153

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  IAE   +S  +L ++   L +A +V +VRG  GG RL RPA  I ++DV+ A +E+
Sbjct: 28 LGDIAERQSVSLPYLEQLFVKLRRAELVASVRGPGGGYRLARPATDIRVVDVLAAVDET 86


>gi|223985227|ref|ZP_03635311.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
           12042]
 gi|223962805|gb|EEF67233.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
           12042]
          Length = 156

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      I   +Y A H + P    ++A   C   + + KI+  L +AGI  +  G  G
Sbjct: 1   MTSELTVAIHAAVYLA-HKNAPQSSDELAVNICTHPVRVRKIMAALCRAGIAVSQEGSEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RLCR    IT+  +     E+  VA   +  +   P + SC + S + + ++  +  L
Sbjct: 60  GYRLCRSPQAITLRQIA----EALNVALVESKWQSGDPEM-SCLVASGMAREMDKIYRSL 114

Query: 123 TQYSIECLVR 132
            +  +E L R
Sbjct: 115 NEQCLESLDR 124


>gi|107028693|ref|YP_625788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105897857|gb|ABF80815.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia AU 1054]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C +T  L   LN 
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHC-MTHELWSTLNQ 119

Query: 118 -FFDVLTQYSIECLV 131
              + L   S++ LV
Sbjct: 120 KMVEYLDSVSLQDLV 134


>gi|292670938|ref|ZP_06604364.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
 gi|292647559|gb|EFF65531.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
          Length = 147

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  ++  A    +  P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGLAAMIVLARSYESSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
           G +GG +L R   +IT  +++ + E S        S K+D
Sbjct: 61  GSQGGYQLSRHPREITAYEILSSIEISLIEKTGTVSEKMD 100


>gi|300693471|ref|YP_003749444.1| transcriptional regulator, rrf2 [Ralstonia solanacearum PSI07]
 gi|299075508|emb|CBJ34801.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
          PSI07]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +A E    +A
Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIA 88


>gi|291279997|ref|YP_003496832.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
           SSM1]
 gi|290754699|dbj|BAI81076.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
           SSM1]
          Length = 140

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++T+  DY IR++ Y A   D   +I +I +   +   F+ KI+  L K  I++T  G+ 
Sbjct: 4   YITREVDYAIRIVAYLA-GKDERIKIDEICKKLYLKRPFVIKIIHKLNKCHILKTYTGKN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG+ L     ++++ D+ +       +  C    +  C L   C +T+       +  + 
Sbjct: 63  GGILLAMDVSELSLYDIFQCLGFKTTINICTEKPE-HCELNPICNITTFFAGIEKSLVNK 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L    I+  + N   + K+
Sbjct: 122 LKNAKIKDFIFNDEDLNKM 140


>gi|239990651|ref|ZP_04711315.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
          Length = 140

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 11  IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +RVLM  A+    + P    ++A    +      K++  L   G+++  RGR GG+ L  
Sbjct: 3   LRVLMRLAVAEGTEAPT-TREVAATMRVPYTHAAKVVARLQHLGLLDARRGRGGGLTLTS 61

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
                +I  +V+  E    V EC       CPL  +C L   LR A +AF+  L   ++ 
Sbjct: 62  AGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFYAALDPITVA 119

Query: 129 CLV 131
            LV
Sbjct: 120 DLV 122


>gi|237748543|ref|ZP_04579023.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379905|gb|EEO29996.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 172

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  T Y IR+L    +    P  I+ ++E   I    +  I   L +  I  ++ G 
Sbjct: 13  MKLSTHTRYAIRILFELHLARG-PISIAALSELTNIGLKTVENIHAVLRQNDITASIIGA 71

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P   I++  +++  +E      CF     DCP    C   SV +        
Sbjct: 72  HGGIRLNKPLSAISLGKMIELFDEGVRFVVCFGEKSNDCPRQNVCETRSVWKTISGQIQK 131

Query: 121 VLTQYSIECLV 131
            L   S+E ++
Sbjct: 132 ELDTVSLEAIL 142


>gi|83718552|ref|YP_442404.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis E264]
 gi|167581325|ref|ZP_02374199.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis TXDOH]
 gi|167619407|ref|ZP_02388038.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis Bt4]
 gi|257138606|ref|ZP_05586868.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis E264]
 gi|83652377|gb|ABC36440.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis E264]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92


>gi|53719900|ref|YP_108886.1| hypothetical protein BPSL2290 [Burkholderia pseudomallei K96243]
 gi|53723804|ref|YP_103329.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei ATCC 23344]
 gi|67643001|ref|ZP_00441751.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei GB8 horse 4]
 gi|76811684|ref|YP_334120.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1710b]
 gi|121598333|ref|YP_993530.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei SAVP1]
 gi|124385259|ref|YP_001029043.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei NCTC 10229]
 gi|126440264|ref|YP_001059626.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 668]
 gi|126453431|ref|YP_001066909.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1106a]
 gi|134277379|ref|ZP_01764094.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 305]
 gi|167000648|ref|ZP_02266459.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei PRL-20]
 gi|167720354|ref|ZP_02403590.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei DM98]
 gi|167739346|ref|ZP_02412120.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 14]
 gi|167816561|ref|ZP_02448241.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 91]
 gi|167824956|ref|ZP_02456427.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 9]
 gi|167846474|ref|ZP_02471982.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei B7210]
 gi|167895052|ref|ZP_02482454.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 7894]
 gi|167903439|ref|ZP_02490644.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei NCTC 13177]
 gi|167911687|ref|ZP_02498778.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 112]
 gi|167919687|ref|ZP_02506778.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei BCC215]
 gi|217420795|ref|ZP_03452300.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 576]
 gi|237813020|ref|YP_002897471.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei MSHR346]
 gi|242314619|ref|ZP_04813635.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1106b]
 gi|254184365|ref|ZP_04890955.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1655]
 gi|254191399|ref|ZP_04897903.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei Pasteur 52237]
 gi|254195785|ref|ZP_04902211.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei S13]
 gi|254200287|ref|ZP_04906653.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei FMH]
 gi|254209363|ref|ZP_04915709.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei JHU]
 gi|254258189|ref|ZP_04949243.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1710a]
 gi|254297029|ref|ZP_04964482.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 406e]
 gi|254357966|ref|ZP_04974239.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei 2002721280]
 gi|262193304|ref|YP_001081037.2| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei NCTC 10247]
 gi|52210314|emb|CAH36293.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52427227|gb|AAU47820.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei ATCC 23344]
 gi|76581137|gb|ABA50612.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1710b]
 gi|121227143|gb|ABM49661.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei SAVP1]
 gi|124293279|gb|ABN02548.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei NCTC 10229]
 gi|126219757|gb|ABN83263.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 668]
 gi|126227073|gb|ABN90613.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1106a]
 gi|134251029|gb|EBA51108.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 305]
 gi|147749883|gb|EDK56957.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei FMH]
 gi|147750136|gb|EDK57207.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei JHU]
 gi|148027093|gb|EDK85114.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei 2002721280]
 gi|157807904|gb|EDO85074.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 406e]
 gi|157939071|gb|EDO94741.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei Pasteur 52237]
 gi|169652530|gb|EDS85223.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei S13]
 gi|184214896|gb|EDU11939.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1655]
 gi|217396207|gb|EEC36224.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 576]
 gi|237504649|gb|ACQ96967.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei MSHR346]
 gi|238524238|gb|EEP87672.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei GB8 horse 4]
 gi|242137858|gb|EES24260.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1106b]
 gi|243063456|gb|EES45642.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei PRL-20]
 gi|254216878|gb|EET06262.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei 1710a]
 gi|261835045|gb|ABO04812.2| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia mallei NCTC 10247]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92


>gi|167837169|ref|ZP_02464052.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia thailandensis MSMB43]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92


>gi|86742249|ref|YP_482649.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86569111|gb|ABD12920.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ R DY +R L+  A  N    +   +A A  +   FL  IL  L +AG+V++ RG 
Sbjct: 1  MQISARADYALRALLTLAASNGRLVKGEALAAAQDLPLRFLENILTDLRRAGLVQSRRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG +L  P ++ITI  V++AT+
Sbjct: 61 DGGYQLSLPPERITIATVIRATD 83


>gi|307152699|ref|YP_003888083.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
          7822]
 gi|306982927|gb|ADN14808.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
          7822]
          Length = 147

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA    +   +L K+L  + +AG+V++VRG
Sbjct: 1  MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG +L     QI++  +++A  E+
Sbjct: 61 CLGGYQLAYQPSQISLGQILEAVGET 86


>gi|150021434|ref|YP_001306788.1| BadM/Rrf2 family transcriptional regulator [Thermosipho
           melanesiensis BI429]
 gi|149793955|gb|ABR31403.1| transcriptional regulator, BadM/Rrf2 family [Thermosipho
           melanesiensis BI429]
          Length = 148

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHK 96
           F  KIL  LV +GI+ + RG+ GG +L +   +ITI D+V A ++   V  CF      K
Sbjct: 41  FAQKILSRLVSSGILSSSRGKFGGYKLTKKPSEITIYDIVSAVDDISTVITCFVEPGKMK 100

Query: 97  IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
           ++  +   C +  + +  +  F   L   ++E L   +S +KK
Sbjct: 101 LEPEI---CTVNEIWQIVMEKFSKSLMSVTLEDL--KKSYLKK 138


>gi|167758029|ref|ZP_02430156.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
 gi|167663926|gb|EDS08056.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
          Length = 140

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + ++   A+H  +     I  IA    +S  +  ++++ L + G+V ++R
Sbjct: 1   MKISTKGIYALEIITDLAMHTGDGALESIGSIARRRGLSVKYSERLIKELKEQGLVVSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNA 117
           G  GG  L R A +IT+ +V++A E      EC  + + DC +   +C    +  +    
Sbjct: 61  GAHGGYCLGRDAGEITVREVLQAEEGELAPVECL-TKETDCGIDCNTCATREIWSQIWQI 119

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
             D   + +I  ++    +++
Sbjct: 120 ILDTAQEVTIGDIIEKSKNLR 140


>gi|167563359|ref|ZP_02356275.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia oklahomensis EO147]
 gi|167570529|ref|ZP_02363403.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia oklahomensis C6786]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQC 92


>gi|254293805|ref|YP_003059828.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Hirschia baltica ATCC 49814]
 gi|254042336|gb|ACT59131.1| transcriptional regulator, BadM/Rrf2 family [Hirschia baltica
          ATCC 49814]
          Length = 147

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L  R  Y +  L+  A ++ D P  +S IAE   IS  +L ++   L KA IV++VRG
Sbjct: 1  MKLGSRGRYAVMALVDLASNDMDGPVSLSDIAERQKISLSYLEQLFAKLRKANIVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L   A +  +  ++ A +E      C
Sbjct: 61 PGGGYLLLNDASKTMVSQIIVAVDEPIQTTRC 92


>gi|218678083|ref|ZP_03525980.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          894]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          + +A+   +S  +L K LQ L  AGI++TV G +GG RL +   +I++LD++ A E
Sbjct: 29 AALAQFHGVSTSYLLKHLQALSGAGILDTVPGPKGGYRLAKAPAEISLLDILLAVE 84


>gi|110679145|ref|YP_682152.1| rrf2 family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109455261|gb|ABG31466.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 24  PNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           P R+   + IAE    + + + ++L  L KAG++ + +G  GG RL R   QIT+ DV  
Sbjct: 58  PERVQTSADIAEHAGTNPVVVRRVLGKLRKAGLLTSEKGHAGGWRLARAPGQITLADVYL 117

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           A +ES            +   + +C +  +L++ + +    + Q  +E L
Sbjct: 118 ALDESLVATG-------EAEAIPACSVEHILQRKVASVLKDVEQSLVERL 160


>gi|313900567|ref|ZP_07834060.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
 gi|312954629|gb|EFR36304.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P + S++++   +S+ +L KI++ LVKA IV ++  + GG  L +   +IT LD+  A E
Sbjct: 23  PVKSSELSKKLNVSDSYLKKIMRQLVKAKIVSSIASKNGGFVLLKTPSRITFLDLFNAIE 82

Query: 84  --ESFFVAECFASHKIDC 99
             E F V+        D 
Sbjct: 83  GQEQFAVSTSLVDRVFDS 100


>gi|313205515|ref|YP_004044692.1| transcriptional regulator, badm/rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|312444831|gb|ADQ81186.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|315023387|gb|EFT36397.1| rrf2 family protein (putative transcriptional regulator)
           [Riemerella anatipestifer RA-YM]
 gi|325335053|gb|ADZ11327.1| Predicted transcriptional regulator [Riemerella anatipestifer
           RA-GD]
          Length = 144

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR  +  A    N+    + +I+ +      F+ KILQ L KA I+E+VRG 
Sbjct: 2   FSKACEYAIRSAICIAQKRLNNQRVNVKEISASIDAPVAFIAKILQQLCKANIIESVRGH 61

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  +      +I I D++ A + S    +C    K +C  V  C + +  R+      
Sbjct: 62  QGGFSIDIEQLKEIKIYDIIVAIDGSGLFTKCGLGLK-ECSSVNPCPVHNDFREIKAKLE 120

Query: 120 DVLTQYSI 127
           ++   YS+
Sbjct: 121 NITKSYSL 128


>gi|299770003|ref|YP_003732029.1| putative transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700091|gb|ADI90656.1| putative transcriptional regulator [Acinetobacter sp. DR1]
          Length = 141

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVIAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           F     D    G C + +V+ +A  A  D L  +++
Sbjct: 61  FNHAPPDWATGGVCAVHAVMLQAEKAMRDALGAHTL 96


>gi|157825855|ref|YP_001493575.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia akari str. Hartford]
 gi|157799813|gb|ABV75067.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia akari str. Hartford]
          Length = 128

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  +++I+    IS  +L +I   L KA +V+ +RG +GG  L    ++I I D++ A  
Sbjct: 14 PVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYVLIGNLEEIKISDIMDAVN 73

Query: 84 ESFFVAECF 92
          E+F +  C+
Sbjct: 74 ENFIMTTCY 82


>gi|315925641|ref|ZP_07921851.1| transcriptional regulator superfamily protein [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315621182|gb|EFV01153.1| transcriptional regulator superfamily protein [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 152

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T++TDY IR+L    I +    +I  +AE   +   F +KI + L +AGIV   RG 
Sbjct: 1  MLITRKTDYAIRLLR--GIADGGKKKIPVLAENEQVPRPFAYKITKKLQQAGIVAVGRGA 58

Query: 61 RGGVRLCRP 69
           GG  L RP
Sbjct: 59 AGGTSLNRP 67


>gi|313682187|ref|YP_004059925.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum
          kujiense DSM 16994]
 gi|313155047|gb|ADR33725.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum
          kujiense DSM 16994]
          Length = 137

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +  YG+  +   A+H    + +I  IAE   I + +L +IL  L K G+++++RG  
Sbjct: 4  ISTKGSYGLAAMYELALHYGQGHLQIRDIAEKANIPQNYLEQILATLRKEGLIQSIRGAG 63

Query: 62 GGVRLCRPADQITILDVVKATE 83
          GG  L +  + I + +++ A E
Sbjct: 64 GGYLLAKAPNAIAVFEILVALE 85


>gi|332289844|ref|YP_004420696.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
           UMN179]
 gi|330432740|gb|AEC17799.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
           UMN179]
          Length = 156

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P  ++ I+E   IS  +L ++   L + G+V++ RG
Sbjct: 1   MKLTSKGRYAVTAILDIALNAGSGPVTLADISERQKISLSYLEQLFAKLRRHGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L   +++I+I  ++ A  E+    +C +  K +C     C   S+ +K  +   
Sbjct: 61  PGGGYQLGYASEEISIGMIISAVNENVQATKCKS--KGNCQDGVQCLTHSLWQKLSDRIE 118

Query: 120 DVLTQYSIECLVRNR 134
           D L + ++  LV ++
Sbjct: 119 DFLNEITVAELVSSQ 133


>gi|300114068|ref|YP_003760643.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus
          watsonii C-113]
 gi|299540005|gb|ADJ28322.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus
          watsonii C-113]
          Length = 140

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + R  Y I  +M  A +       +  IA+   IS  +L +I   L   G+VE +RG
Sbjct: 1  MRFSNRPRYAISAMMNLALVKQQETVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L R A++ITI +++ A ++
Sbjct: 61 PGGGYHLTRTAEKITIAEIIAAVDK 85


>gi|220908247|ref|YP_002483558.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7425]
 gi|219864858|gb|ACL45197.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7425]
          Length = 147

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 15/146 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  R  YG+  L+  ++H  +  P + + IA    I+  +L +IL  L +AGIV + R
Sbjct: 3   MELPIRVHYGLLALLELSLHATSRQPLKANAIAARQEIASRYLEQILSMLRQAGIVASYR 62

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-----SVLRK 113
           G  GG  L R   +IT+ DV       F   E    +K   P  G   LT      + ++
Sbjct: 63  GAAGGYTLARDPSEITVWDV-------FSCLEGETINKQPAP-DGPPNLTKEILQEIWQQ 114

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKK 139
           +  A  +VL Q +++ L+  R   K+
Sbjct: 115 STTAAQNVLQQITLQDLLIRRKEYKQ 140


>gi|116873720|ref|YP_850501.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742598|emb|CAK21722.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 156

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 37  SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVA 89
           S  ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  + 
Sbjct: 39  SSSYISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIH 98

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
             F+ +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 99  TVFSDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140


>gi|168703183|ref|ZP_02735460.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 14  LMYCAIH--NDYPNRISQIAEACCISEL-FLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           ++  A H  +  P R++ IA    IS   FL +IL  L K G+V + RG  GG  + R  
Sbjct: 1   MLELAAHYGDPKPVRLTDIANKHGISSPRFLVQILIQLNKDGLVTSTRGAAGGYHIARAP 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
             IT+ DV+ A E +        + K   PL  +  L  V  +   A  D L +   +  
Sbjct: 61  SAITLADVIAAVEGTEQAGTRTKARKPTSPL--AAALDDVWDRVRTAHEDFLLK---QAA 115

Query: 131 VRNRSSIKKIFNAG 144
           +   +++ ++ ++G
Sbjct: 116 ILKSTTLAQLVDSG 129


>gi|254821269|ref|ZP_05226270.1| hypothetical protein MintA_15127 [Mycobacterium intracellulare ATCC
           13950]
          Length = 161

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIQLATVSDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L R    I+I DV++  +              D P  G +  LT V R    + 
Sbjct: 61  REGGYELARSGSDISIADVLRCIDGPLASVRDIGLG--DLPYSGPTAALTDVWRALRASM 118

Query: 119 FDVLTQYSI 127
             VL Q ++
Sbjct: 119 RSVLEQTTL 127


>gi|157964665|ref|YP_001499489.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia massiliae MTU5]
 gi|157844441|gb|ABV84942.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia massiliae MTU5]
          Length = 139

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L  A +V+ +RG
Sbjct: 1  MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKNADLVKAIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF 92
           +GG  L    ++I I D++ A  E+F +  C+
Sbjct: 61 SKGGYILIGNLEEIKIADIMDAVNENFIMTTCY 93


>gi|332524348|ref|ZP_08400568.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
          benzoatilyticus JA2]
 gi|332107677|gb|EGJ08901.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
          benzoatilyticus JA2]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ RT + +  L+   +     P  ++ I     +S  ++ ++   L + G+VE+ RG
Sbjct: 1  MRMSTRTRFAVNALVDLGLRQQAGPVALAAICGRLQVSLSYMEQVFARLRRQGLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L R AD ITI DVV A E+
Sbjct: 61 PGGGYTLGRRADAITIADVVSAVED 85


>gi|153815370|ref|ZP_01968038.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC
          27756]
 gi|317500841|ref|ZP_07959053.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089263|ref|ZP_08338165.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847229|gb|EDK24147.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC
          27756]
 gi|316897721|gb|EFV19780.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330405815|gb|EGG85344.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 136

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L   TDY IR ++Y        +  ++I+    I   +L K+L  L KA  +    G 
Sbjct: 1  MQLNVTTDYAIRTVLYLGQCKKIAS-ATEISNEMGIPRGYLEKVLSKLKKAEYISADLGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
          RGG RL +    IT+ DV++  E +  +  C 
Sbjct: 60 RGGYRLNKTLKDITLGDVIRLMESTTKINRCL 91


>gi|269793340|ref|YP_003318244.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100975|gb|ACZ19962.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            ++A     SE  L K++Q L +AGI+ +  G  GGV L     ++ +LDV +A E    
Sbjct: 32  GELASRIGASEAHLSKVVQHLTRAGILRSKSGPGGGVELAADPSRLKLLDVYEAMEGKSS 91

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
              C     + CP  G C    ++ +  +   D L + ++
Sbjct: 92  KGGCPLGKGL-CPFGGRCLFGGLMGRVEDQVLDFLARTTL 130


>gi|32474577|ref|NP_867571.1| hypothetical protein RB6994 [Rhodopirellula baltica SH 1]
 gi|32445116|emb|CAD75118.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
 gi|327541268|gb|EGF27811.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 141

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 9  YGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          Y    +M  A+H++   P R S+I     I   +L +IL+ L   G V  VRG +GG  L
Sbjct: 9  YACLAMMDLAMHSNDGQPVRTSEITSRHDIPGPYLVQILRTLKSTGWVRAVRGSQGGYVL 68

Query: 67 CRPADQITILDVVKA 81
              D IT+LD+ +A
Sbjct: 69 AVDPDSITLLDIAEA 83


>gi|254411526|ref|ZP_05025303.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182027|gb|EDX77014.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
           PCC 7420]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T+Y +  L+    H +   P +I QIA    I + +L ++L  L +  +V + R
Sbjct: 1   MELSCKTEYTLLALLELTGHYNQGEPLQIRQIAAQQNIPDRYLEQLLATLRRGNLVRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +IT+LD++   + S        ++ I      S  +    ++  +  
Sbjct: 61  GAKGGYILAREPWRITLLDIMNCLDGSTATTSGSQTNAI---TEASAIVQETWQEVRDRT 117

Query: 119 FDVLTQYSIECL---VRNRSSIKKIF 141
            D+L  Y+++ L   + NR  +  ++
Sbjct: 118 NDILRDYTLQDLWEKLNNRQQLNIMY 143


>gi|119898309|ref|YP_933522.1| Rrf2 family protein [Azoarcus sp. BH72]
 gi|119670722|emb|CAL94635.1| Rrf2 family protein [Azoarcus sp. BH72]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A    D P  ++ IA+   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLASRQADGPVTLAGIADRQKISLSYLEQLFGKLRRHKLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG RL R    IT+ D++ A +E     +C    K +C     C    L + L K + 
Sbjct: 61  PGGGYRLARDMAAITVADIIIAVDEPLDATQCGG--KQNCHDEHRCVTHDLWANLNKRMY 118

Query: 117 AFFDVLT 123
           A+ D ++
Sbjct: 119 AYLDSVS 125


>gi|332665390|ref|YP_004448178.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334204|gb|AEE51305.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 137

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++  Y I+ L+Y A        + + IA    I + FL  IL  + +A +V + +G  
Sbjct: 2   LSQKAKYAIKALIYLAKQEKGSLTKTADIASKSSIPKKFLELILIDMKRASLVSSKQGIG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + AD+I + D+ +  + +  +  C    F     DCP   +C +   L +  + 
Sbjct: 62  GGYYLLKDADEINLADIYRLFDGAIAMLPCASLRFYEPCHDCPDEATCLIRKSLIQVRDQ 121

Query: 118 FFDVLTQYSIECLVRN 133
               L + +I+ L + 
Sbjct: 122 TLHALEKTTIKMLTKE 137


>gi|259502086|ref|ZP_05744988.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
 gi|259169899|gb|EEW54394.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L+Y  I     N  S IAE+   +   + +++  +VKAGI+E   G+
Sbjct: 1  MKYSHRLSDAVHILVYLEILGS--NSSSAIAESVNSNPSLIRRLIAHMVKAGILER-SGQ 57

Query: 61 RG--GVRLCRPADQITILDVVKATE 83
           G   ++L RPAD+I++LD+ +A E
Sbjct: 58 HGEITIKLTRPADRISLLDIYQAVE 82


>gi|220910380|ref|YP_002485691.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
          7425]
 gi|219866991|gb|ACL47330.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
          7425]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+ +++Y +  ++  A     + P +I QIA    I + +L ++L  L + G++ + R
Sbjct: 1  MELSCKSEYALLAMLELADAYKRNEPLQIRQIAALHSIPDRYLEQLLATLRRCGLIRSQR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G +GG  L R   QIT+L+V++  E
Sbjct: 61 GAKGGYLLAREPWQITLLEVMECIE 85


>gi|294501358|ref|YP_003565058.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          megaterium QM B1551]
 gi|295706705|ref|YP_003599780.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          megaterium DSM 319]
 gi|294351295|gb|ADE71624.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          megaterium QM B1551]
 gi|294804364|gb|ADF41430.1| transcriptional regulator of cysteine biosynthesis [Bacillus
          megaterium DSM 319]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A    + P  +  IA+   +SE +L +++ PL  AG+V++VRG
Sbjct: 1  MKISTKGRYGLTIMIELAKRFGEGPISLKTIAQTHDLSEHYLEQLISPLRNAGLVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L      IT  D++   E
Sbjct: 61 AYGGYILAHEPANITSGDIISVLE 84


>gi|160931599|ref|ZP_02078994.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
 gi|156869470|gb|EDO62842.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
          Length = 168

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE  C +   + K++  L KAG+V T  G  GG  L + A+QIT+  +  A +  F  +
Sbjct: 42  LAENICTNPARVRKVMAKLKKAGLVSTKEGSEGGYSLAKNAEQITLKQISAALQIEFVSS 101

Query: 90  EC-FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
                S  +DC +V S G+  V+ + L +  D L Q  +E
Sbjct: 102 HWRSGSQNLDC-MVAS-GMADVMDR-LYSDLDALCQKRLE 138


>gi|126736370|ref|ZP_01752112.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
          sp. CCS2]
 gi|126714191|gb|EBA11060.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
          sp. CCS2]
          Length = 154

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+ + +    +++I++   IS  +L ++   L +AG+V++VRG
Sbjct: 1  MKLSTKGRYAMVALADLALQDGNALVNLTEISKRQDISLPYLEQLFVKLRRAGLVDSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL RPA  I + +++ A +E+
Sbjct: 61 PGGGYRLARPAADIRVSEILGAVDET 86


>gi|254459171|ref|ZP_05072593.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
          bacterium GD 1]
 gi|207084064|gb|EDZ61354.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
          bacterium GD 1]
          Length = 137

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 9  YGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          YG+  ++  A  ++    +I  IA    I + +L +IL  L K+G+VE+VRG  GG +L 
Sbjct: 10 YGLTAIIILAKEDNAKLLQIKDIAAKGDIPQNYLEQILVLLKKSGLVESVRGANGGYKLS 69

Query: 68 RPADQITILDVVKATE 83
          R  + I++ +V+ + E
Sbjct: 70 RDKNNISVYEVLNSLE 85


>gi|159045131|ref|YP_001533925.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912891|gb|ABV94324.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     + IAE    + + + ++L  L +AG++ + +G 
Sbjct: 23  MKRNSRLSLALHTLSHMAGEPDRMRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RP   IT+ DV  A +E          +  D P   +C +   L + +++  +
Sbjct: 83  AGGWRLARPPQDITLADVYLALDERMVA----TGNAEDVP---ACSIEHALHRRVSSVLE 135

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + +  ++ L    +SI ++  A
Sbjct: 136 EIEESLVQRL--RETSISEVRGA 156


>gi|46580376|ref|YP_011184.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120602251|ref|YP_966651.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46449793|gb|AAS96443.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562480|gb|ABM28224.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311233649|gb|ADP86503.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 173

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++    Y  R+L+  A H     P   S++A+   IS  F+ KI++ L  AG+V +VR
Sbjct: 1   MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + +T+ DV++  E       C      DC     C   +    A  A 
Sbjct: 61  GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGD--DCEDT-PCRCKTAWISAAKAL 117

Query: 119 FDVLTQYSI 127
              L QY++
Sbjct: 118 EATLDQYTL 126


>gi|326335576|ref|ZP_08201763.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692342|gb|EGD34294.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AI++   N+  + +IAE   I   FL KILQ L K   + + +G 
Sbjct: 2   LSNSSKYAINAVLYLAINSSVNNKKGVKEIAETLQIPTAFLAKILQVLAKKEAICSTKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115
            GG  L     +  +  +V   + S   A C       S +I CP+  +     V     
Sbjct: 62  GGGFYLTEEKAKAPLASIVHYIDGSDKFAVCLLGIRSCSEEIPCPMHYAVKPFKV----- 116

Query: 116 NAFFDVLTQYSIECL---VRN 133
             F + L ++SIE     VRN
Sbjct: 117 -RFLEELEKHSIEYFAAKVRN 136


>gi|260588850|ref|ZP_05854763.1| sensory box protein [Blautia hansenii DSM 20583]
 gi|260540629|gb|EEX21198.1| sensory box protein [Blautia hansenii DSM 20583]
          Length = 488

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY IR++ + A + + P   + IA +  I   ++ KI++ L  A IV +V G 
Sbjct: 1  MQLTSTTDYSIRLVCFLA-YKEEPCSTATIATSANIPNNYIPKIIKKLKIANIVGSVEGV 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
          +GG  L +  + IT+ D++   E +  + +C 
Sbjct: 60 QGGYFLLKKPETITLWDILDTMESTMKINKCL 91


>gi|68171749|ref|ZP_00545098.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998829|gb|EAM85532.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 524

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)

Query: 1   MHLTKRTDYGIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y +  ++      Y    +  P R+S IA +  +SE +L +I+  L K G++
Sbjct: 1   MLITTRLRYAVMFMVKLAQEYYTLKGSTQPKRMSHIANSQSLSEGYLEQIIVKLKKQGLI 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            + +G  GG  L +  + IT+  ++++  E+  +  C  +H I C
Sbjct: 61  NSTKGPGGGYSLNKSPNSITLNLILESIGENIKITRC-KNHLIGC 104


>gi|121594035|ref|YP_985931.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606115|gb|ABM41855.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 187

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R    +  +   A+ +   P  +  I+    IS  +L  I   L +AG+V ++RG
Sbjct: 1  MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L RP  ++++ D+V A+E+
Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEK 85


>gi|183984102|ref|YP_001852393.1| putative transcriptional regulatory protein [Mycobacterium
          marinum M]
 gi|183177428|gb|ACC42538.1| conserved hypothetical transcriptional regulatory protein
          [Mycobacterium marinum M]
          Length = 161

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +Y +R ++  A  +     +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1  MRMSAKAEYAVRAMVQLATADSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          R GG  L RP   I+I DV++
Sbjct: 61 RDGGYELARPGTDISIADVLR 81


>gi|260655751|ref|ZP_05861220.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
 gi|260629367|gb|EEX47561.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
          Length = 152

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G+  L+      + P     ++E+   S+  L K+LQ L  AG V  +RG  GG +L   
Sbjct: 4   GLHALVALGREPEQPRTTETLSESIGCSKTHLSKVLQKLCHAGYVTALRGPGGGYQLALR 63

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            ++I +L V +     F    C   H  + P    C + +++ +   AF D L   +   
Sbjct: 64  PEKICMLHVFELLGGPFIPTGCTVDHHQNEP----CLIGAMMDELTIAFRDYLATKTFYH 119

Query: 130 LVR 132
           L+R
Sbjct: 120 LLR 122


>gi|255029797|ref|ZP_05301748.1| hypothetical protein LmonL_13364 [Listeria monocytogenes LO28]
 gi|332312785|gb|EGJ25880.1| Rrf2 family protein [Listeria monocytogenes str. Scott A]
          Length = 143

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92
           ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  +   F
Sbjct: 29  YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 88

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 89  SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 127


>gi|222111232|ref|YP_002553496.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus
          TPSY]
 gi|221730676|gb|ACM33496.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
          TPSY]
          Length = 187

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R    +  +   A+ +   P  +  I+    IS  +L  I   L +AG+V ++RG
Sbjct: 1  MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L RP  ++++ D+V A+E+
Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEK 85


>gi|238028021|ref|YP_002912252.1| putative transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877215|gb|ACR29548.1| Predicted transcriptional regulator [Burkholderia glumae BGR1]
          Length = 178

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAGDVTVADIIIAVDEPLDATQC 92


>gi|312884218|ref|ZP_07743927.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367991|gb|EFP95534.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 168

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL   AD I I  ++ A +ES    +C    + DC     C LT  L   L++  
Sbjct: 61  PGGGYRLGGEADTIAIGMIIAAVDESVDATKCQG--RGDCQGGARC-LTHTLWHDLSSRI 117

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++  L+++
Sbjct: 118 SDFLNNITLGELMKD 132


>gi|116622995|ref|YP_825151.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116226157|gb|ABJ84866.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 158

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  ++  +Y IR  ++ A +       +  IAE   I   FL KILQ L + G++ + +G
Sbjct: 1  MIYSRSAEYAIRAFVHLAQVQEGKYAMVKNIAEQEDIPAHFLAKILQQLARKGLLRSSKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L   A +I +LD+V+A +
Sbjct: 61 PTGGFALRVDASEIRLLDIVEALD 84


>gi|303327401|ref|ZP_07357842.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862341|gb|EFL85274.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 148

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + RT YG+R L+  A    D   ++ Q+A    IS  +L +I++ L   GI+  VRG
Sbjct: 3  MRFSTRTRYGLRFLLRLAAQPKDSLLQLGQVAREENISSGYLEQIVRALKPLGILRAVRG 62

Query: 60 RRGGVRLCRPADQITILDV 78
            GG  L +   +I + DV
Sbjct: 63 SGGGYALAKDPSEINMEDV 81


>gi|118619195|ref|YP_907527.1| putative transcriptional regulatory protein [Mycobacterium
          ulcerans Agy99]
 gi|118571305|gb|ABL06056.1| conserved hypothetical transcriptional regulatory protein
          [Mycobacterium ulcerans Agy99]
          Length = 161

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +Y +R ++  A  +     +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1  MRMSAKAEYAVRAMVQLATTDSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          R GG  L RP   I+I DV++
Sbjct: 61 RDGGYELARPGTDISIADVLR 81


>gi|254488419|ref|ZP_05101624.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
          GAI101]
 gi|214045288|gb|EEB85926.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
          GAI101]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L+ +  Y +  L   A+    P     +  IAE   IS  +L ++   L +A +V +V
Sbjct: 1  MKLSTKGRYAMVALTDIALQP--PGGLVSLGDIAERQSISLPYLEQLFVKLRRAELVASV 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATEE 84
          RG  GG RL RPA  I ++D++ A +E
Sbjct: 59 RGPGGGYRLGRPASDIRVVDILSAVDE 85


>gi|300902070|ref|ZP_07120084.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|301307042|ref|ZP_07213079.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|300405815|gb|EFJ89353.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300837728|gb|EFK65488.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|315252301|gb|EFU32269.1| Rrf2 family protein [Escherichia coli MS 85-1]
          Length = 148

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           TK  +YGIR  ++ A+++    R+S  +IA++    E F  KILQ L K  I+ +V+G 
Sbjct: 2  FTKACEYGIRACIFVALNSMEKRRVSLKEIAQSIDSPEYFTAKILQKLAKGKIIYSVQGA 61

Query: 61 RGGVRLCRPA-DQITILDVV 79
          +GG  +       I+I D+V
Sbjct: 62 QGGFEMEEAKIRTISIEDIV 81


>gi|282897323|ref|ZP_06305325.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
 gi|281197975|gb|EFA72869.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
          Length = 160

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           I+ IA    I E +L +IL  L +AGIV++ RG +GG  L R   +I++L++V   E   
Sbjct: 46  INDIAAKQPIPERYLEQILTQLRRAGIVQSQRGSKGGFLLVREPWEISLLEIVTLIE--- 102

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
              E           +    +  +  +A  A  +VL +Y+++ L + R 
Sbjct: 103 --GERNEKRNAKVLTIEKSLVWEIWERANIASVEVLGRYTLQDLCQERE 149


>gi|83644269|ref|YP_432704.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632312|gb|ABC28279.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 159

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L +  DYG+ +            ++ Q+A+   +    + KI++ LV  G+V + RG 
Sbjct: 2   LRLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLVDGGVVHSERGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL---TSVLRKALNA 117
           +GG  L   A  I+I  +++A E    + +C A  ++ C ++ +C +    SV+ + ++ 
Sbjct: 62  KGGYCLSDAAYNISIARILRAVEGGVALTDCCAEERV-CDVMHACTVHSNWSVINQTVSE 120

Query: 118 FFDVLT 123
            F+ LT
Sbjct: 121 IFERLT 126


>gi|199598905|ref|ZP_03212315.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
 gi|199590213|gb|EDY98309.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
          Length = 146

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 19/127 (14%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A H DY + I +I+E   I    + KI   L K+GI+ +  G  GG+RL +    IT+ +
Sbjct: 23  AQHEDYLS-IQKISEMLNIPVPSIKKISSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81

Query: 78  VVKATEESFFVAECFASH------------KIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
           ++ A E +   A  F  H            ++   LV S   T+VL +A +A   VL Q 
Sbjct: 82  ILAAIEGT---APLFKLHQEIDPAAFVNGERVTSWLVAS---TNVLNRAEDAMVQVLKQT 135

Query: 126 SIECLVR 132
           SI  L  
Sbjct: 136 SIADLAE 142


>gi|324998176|ref|ZP_08119288.1| transcriptional regulator [Pseudonocardia sp. P1]
          Length = 258

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           L  ++  L +AG+V + RG  GG RL R AD+IT+ DVV+ATE +  V
Sbjct: 176 LVNVMLQLRRAGLVTSRRGCEGGYRLARRADEITVADVVRATEGAVAV 223


>gi|300778846|ref|ZP_07088704.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300504356|gb|EFK35496.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 135

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 3   LTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K++ Y  + L Y     N+ P  IS+IAE   I   FL  IL  L KA I+++ +G+ 
Sbjct: 2   LSKKSQYAFKALSYLVEKRNEGPILISEIAEHKKIPLKFLENILLELKKADILDSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG       + + +  +++       +  C    F     DC     CGL  VL +  +A
Sbjct: 62  GGYFFKENPENVKLAKIIRLVNGPIAMLPCVSLNFYEKCEDCN-EDHCGLHDVLIEVRDA 120

Query: 118 FFDVLTQYSIECLV 131
             ++L   ++  LV
Sbjct: 121 SLNILESKTLMDLV 134


>gi|218438424|ref|YP_002376753.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Cyanothece sp. PCC 7424]
 gi|218171152|gb|ACK69885.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
          7424]
          Length = 147

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT R  Y ++ L+  ++   Y P  +  IA    +   +L K+L  + +AG+V+++RG
Sbjct: 1  MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60 RRGGVRL-CRPADQITILDVVKATEESF 86
           +GG +L C P+ QI++  +++A  E+ 
Sbjct: 61 CQGGYQLACEPS-QISLGQILEAVGETI 87


>gi|307729210|ref|YP_003906434.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          CCGE1003]
 gi|323526617|ref|YP_004228770.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          CCGE1001]
 gi|307583745|gb|ADN57143.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1003]
 gi|323383619|gb|ADX55710.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1001]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R  + +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRPEDVTVADIIIAVDEPLDATQC 92


>gi|159184929|ref|NP_354795.2| hypothetical protein Atu1813 [Agrobacterium tumefaciens str. C58]
 gi|159185848|ref|NP_356954.2| hypothetical protein Atu3663 [Agrobacterium tumefaciens str. C58]
 gi|159140208|gb|AAK87580.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
 gi|159140982|gb|AAK89739.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 140

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +IA+    + + + + L  L ++GIV +  GR GG +L R  DQIT+LDV +A  E   +
Sbjct: 29  RIAQMLNTNPVVVRRTLGALRESGIVVSEGGRGGGWKLIRSLDQITVLDVQRALVEGQML 88

Query: 89  AECFASHKIDCPL 101
               +    +CP+
Sbjct: 89  PAPLSKDHPNCPV 101


>gi|163942148|ref|YP_001647032.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229013616|ref|ZP_04170747.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
 gi|229019620|ref|ZP_04176432.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
 gi|229025860|ref|ZP_04182256.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
 gi|229062093|ref|ZP_04199418.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
 gi|229135221|ref|ZP_04264020.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
 gi|229169141|ref|ZP_04296856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
 gi|163864345|gb|ABY45404.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
 gi|228614369|gb|EEK71479.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
 gi|228648263|gb|EEL04299.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
 gi|228717245|gb|EEL68920.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
 gi|228735412|gb|EEL86011.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
 gi|228741668|gb|EEL91856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
 gi|228747675|gb|EEL97547.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
          Length = 138

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPVNITAGDVIRVLEGPISVVEMIEEEE--------PAQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|295690375|ref|YP_003594068.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432278|gb|ADG11450.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 139

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P     +A++   +     + +  L +AG V + +G  GG RL RP 
Sbjct: 11  LHVLLHMA-QVDQPLTSEVLAKSMGTNPAVFRRTMAGLREAGYVRSGKGHGGGWRLGRPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
           DQIT+L + +A       A  + S   DC +    +  L+  + +A   F +   Q +++
Sbjct: 70  DQITLLAIYEALNRPRLFAIGYRSDHPDCLIEQNVNAALSETMAQAEALFIERFGQVTLD 129

Query: 129 CL 130
            L
Sbjct: 130 QL 131


>gi|313894737|ref|ZP_07828298.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976646|gb|EFR42100.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 149

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +  D     S+ ++ +     + + +IL  L +AG++  +RG
Sbjct: 1   MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRVMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           R GG  L RP  +IT+ DV  A  ES      F+ H+   P
Sbjct: 61  REGGAYLVRPLSEITLADVFHAV-ESLGGDTLFSFHENPNP 100


>gi|284802803|ref|YP_003414668.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
 gi|284995945|ref|YP_003417713.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
 gi|315283437|ref|ZP_07871629.1| Rrf2 family protein [Listeria marthii FSL S4-120]
 gi|284058365|gb|ADB69306.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
 gi|284061412|gb|ADB72351.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
 gi|313612915|gb|EFR86865.1| Rrf2 family protein [Listeria marthii FSL S4-120]
          Length = 157

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92
           ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  +   F
Sbjct: 43  YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 102

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 103 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 141


>gi|120435758|ref|YP_861444.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117577908|emb|CAL66377.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 142

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  +Y A    N   + + +IA A    E F  KI+Q L K  IV + +G 
Sbjct: 2   FSKACEYGIRATLYIAHQSQNGMRSNLGEIARAVNSPEAFTAKIMQKLSKNEIVASRKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPL 101
            GG     P+ +  ++ +V+A +       C       S  + CPL
Sbjct: 62  SGGF-FIDPSSKTKLIAIVQAIDGDLIYNGCGLGLQECSESLPCPL 106


>gi|118475517|ref|YP_892257.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414743|gb|ABK83163.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 134

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  ++    IS+ FL KILQ L K GI+ + +G  GG  L      I+I  ++++ E
Sbjct: 23  PKDVDTMSTELGISKSFLAKILQNLAKEGILNSFKGANGGFILANKPANISIKKILESAE 82

Query: 84  E-SFFVAECFASHKIDCP 100
           +    V EC ++ + DCP
Sbjct: 83  KRKASVFEC-SNARSDCP 99


>gi|125975009|ref|YP_001038919.1| BadM/Rrf2 family transcriptional regulator [Clostridium
          thermocellum ATCC 27405]
 gi|256005105|ref|ZP_05430075.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
 gi|125715234|gb|ABN53726.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum ATCC 27405]
 gi|255990956|gb|EEU01068.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
 gi|316939170|gb|ADU73204.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 1313]
          Length = 147

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R ++  A+++      +  IAE   ISE +L ++   L KA IV++++G
Sbjct: 1  MKMSTKGRYGLRAMLDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L      IT+  +++  E +  V +
Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD 91


>gi|258542739|ref|YP_003188172.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256633817|dbj|BAH99792.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256636876|dbj|BAI02845.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
 gi|256639929|dbj|BAI05891.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
 gi|256642985|dbj|BAI08940.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
 gi|256646040|dbj|BAI11988.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
 gi|256649093|dbj|BAI15034.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
 gi|256652080|dbj|BAI18014.1| transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655137|dbj|BAI21064.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L++  DY I +L+            + +A    + E  + K+L+ L   G V + RG 
Sbjct: 2   LKLSRLADYAIVILVKLGEQEGVVTSPT-LAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP   I++  V+ A +    +  C    + D  +  SCGL         A   
Sbjct: 61  KGGYRLARPLADISVASVITAVDGKIALTACVDGGECDTGV--SCGLCGSWDTINQAIRT 118

Query: 121 VLTQYSIECLVRNRSS 136
            L   S+E + R+++S
Sbjct: 119 TLEGISLESM-RSKAS 133


>gi|313205087|ref|YP_004043744.1| transcriptional regulator, badm/rrf2 family [Paludibacter
           propionicigenes WB4]
 gi|312444403|gb|ADQ80759.1| transcriptional regulator, BadM/Rrf2 family [Paludibacter
           propionicigenes WB4]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG+R ++  A   D    + + IA+   IS  +L  I+  L   G++   +G
Sbjct: 1   MRINTKIRYGLRTMIEIASSTDANGMLQKDIAKNQNISLKYLDPIISSLKLKGLIVNSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R  G RL R    IT+LD+  A E+   V EC  +       +  C   +   +  N F 
Sbjct: 61  RGSGYRLTREPKDITMLDIYTAFEQ-IIVIECINNLGYCDRSMHDCKGRNYWNEFKNEFA 119

Query: 120 DVLTQYSIECLV 131
           ++L   ++E ++
Sbjct: 120 EMLRSKNLEQII 131


>gi|16801523|ref|NP_471791.1| hypothetical protein lin2461 [Listeria innocua Clip11262]
 gi|16804399|ref|NP_465884.1| hypothetical protein lmo2361 [Listeria monocytogenes EGD-e]
 gi|46908531|ref|YP_014920.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092459|ref|ZP_00230249.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|47097339|ref|ZP_00234894.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|217963540|ref|YP_002349218.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|224499040|ref|ZP_03667389.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
 gi|224503509|ref|ZP_03671816.1| Rrf2 family protein [Listeria monocytogenes FSL R2-561]
 gi|226224912|ref|YP_002759019.1| hypothetical protein Lm4b_02331 [Listeria monocytogenes Clip81459]
 gi|254825058|ref|ZP_05230059.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|254826814|ref|ZP_05231501.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|254831214|ref|ZP_05235869.1| hypothetical protein Lmon1_07647 [Listeria monocytogenes 10403S]
 gi|254854313|ref|ZP_05243661.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|254901113|ref|ZP_05261037.1| hypothetical protein LmonJ_14903 [Listeria monocytogenes J0161]
 gi|254914037|ref|ZP_05264049.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254933311|ref|ZP_05266670.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|254938352|ref|ZP_05270049.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|254992735|ref|ZP_05274925.1| hypothetical protein LmonocytoFSL_06501 [Listeria monocytogenes FSL
           J2-064]
 gi|255017809|ref|ZP_05289935.1| hypothetical protein LmonF_08865 [Listeria monocytogenes FSL
           F2-515]
 gi|255027001|ref|ZP_05298987.1| hypothetical protein LmonocytFSL_12903 [Listeria monocytogenes FSL
           J2-003]
 gi|255521538|ref|ZP_05388775.1| hypothetical protein LmonocFSL_10010 [Listeria monocytogenes FSL
           J1-175]
 gi|290893648|ref|ZP_06556630.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|300763892|ref|ZP_07073888.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|16411849|emb|CAD00439.1| lmo2361 [Listeria monocytogenes EGD-e]
 gi|16414983|emb|CAC97688.1| lin2461 [Listeria innocua Clip11262]
 gi|46881803|gb|AAT05097.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47014290|gb|EAL05268.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47019236|gb|EAL09979.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217332810|gb|ACK38604.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|225877374|emb|CAS06088.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258599191|gb|EEW12516.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|258607706|gb|EEW20314.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|258610965|gb|EEW23573.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|290556850|gb|EFD90382.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293584871|gb|EFF96903.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|293592056|gb|EFG00391.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594300|gb|EFG02061.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|300515233|gb|EFK42284.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|307571883|emb|CAR85062.1| HTH rrf2-type DNA-binding domain protein [Listeria monocytogenes
           L99]
 gi|313607154|gb|EFR83645.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
 gi|313617478|gb|EFR89842.1| Rrf2 family protein [Listeria innocua FSL S4-378]
 gi|313622624|gb|EFR93003.1| Rrf2 family protein [Listeria innocua FSL J1-023]
 gi|328465394|gb|EGF36641.1| hypothetical protein LM1816_13597 [Listeria monocytogenes 1816]
 gi|328471579|gb|EGF42459.1| hypothetical protein LM220_03882 [Listeria monocytogenes 220]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92
           ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  +   F
Sbjct: 42  YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140


>gi|192359869|ref|YP_001981952.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
           japonicus Ueda107]
 gi|190686034|gb|ACE83712.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
           japonicus Ueda107]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  ++ I+    IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDSGPVSLADISARQGISLSYLEQLFARLRQFNLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG +L      I++  VV A  ES     C    K +C   G   LT  L + L+A  
Sbjct: 61  PGGGYQLASSTCDISVAQVVDAVSESLDATRCEG--KGNCQ-EGEVCLTHHLWQDLSAQI 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
              L   S+  LV  RS I+ +
Sbjct: 118 HQFLNSISLADLV-ARSDIQAV 138


>gi|197105185|ref|YP_002130562.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
 gi|196478605|gb|ACG78133.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
          Length = 144

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETV 57
          M L+ +  Y +  +   A       R   +A+     E+   +L ++   L + G+V++ 
Sbjct: 1  MRLSTKGRYAVMAMADLARREGEAARAVALADIAARQEISLSYLEQLFARLRRKGLVKSA 60

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
          RG  GG RL R A+Q +I ++V A +E      C  + K
Sbjct: 61 RGPGGGYRLARTAEQTSIAEIVHAVDEPLRATRCANAGK 99


>gi|56418891|ref|YP_146209.1| hypothetical protein GK0356 [Geobacillus kaustophilus HTA426]
 gi|56378733|dbj|BAD74641.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 13/110 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA-----TEE 84
           IA++   + + + +I+  L KAG+V+ VR   GG  L +P DQIT+LDV +A     T++
Sbjct: 30  IAQSVNTNPVIIRRIMGMLKKAGLVD-VRPGVGGASLRKPPDQITLLDVYRAVGVVETDQ 88

Query: 85  SFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLV 131
            F + E      I CP VG      L + L+ A  A  + L+Q +I  L+
Sbjct: 89  LFRIHE---HPNIQCP-VGRNIEAVLQAELKAAQAAMEERLSQTTISRLI 134


>gi|168185784|ref|ZP_02620419.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
 gi|169296028|gb|EDS78161.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
          Length = 139

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+  DY +R ++Y C +          I+E+  I   FL KIL+ L  AGIVE+ RG
Sbjct: 1  MKITQEVDYALRTVLYLCKLGYGEKIEAKNISESENIPIRFLLKILRKLKHAGIVESYRG 60

Query: 60 RRGGVRLCR 68
            GG  L +
Sbjct: 61 VNGGYALNK 69


>gi|16080810|ref|NP_391638.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221311722|ref|ZP_03593569.1| hypothetical protein Bsubs1_20306 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221316048|ref|ZP_03597853.1| hypothetical protein BsubsN3_20217 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221320959|ref|ZP_03602253.1| hypothetical protein BsubsJ_20160 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221325244|ref|ZP_03606538.1| hypothetical protein BsubsS_20326 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|6137293|sp|P71047|YWGB_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywgB
 gi|1561569|emb|CAB02493.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636294|emb|CAB15785.1| putative transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|291486345|dbj|BAI87420.1| hypothetical protein BSNT_05747 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          I++   +S  +L K+++ LV+AG+ E++ G +GG  L +P   IT+ DV +A E
Sbjct: 31 ISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVE 84


>gi|289435629|ref|YP_003465501.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171873|emb|CBH28419.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313632170|gb|EFR99244.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
 gi|313636561|gb|EFS02277.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92
           ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  +   F
Sbjct: 42  YISKILRKLVVSGLINSVSGNNGGFTLAKNPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLSVLVE 140


>gi|251795969|ref|YP_003010700.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
 gi|247543595|gb|ACT00614.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
          Length = 133

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          KR  +G++ L+  A   +     S+IAE        L KIL  LV+ GI+E  +GR GG 
Sbjct: 5  KRFGFGVQALIVLASQTELLTS-SEIAERIHCEPTALRKILSQLVEGGIIEVKQGRTGGY 63

Query: 65 RLCRPADQITILDVVKATEES 85
          +L +  + +T+ +V K   E 
Sbjct: 64 QLAKRPELVTLREVYKTVHEE 84


>gi|296117178|ref|ZP_06835771.1| transcriptional regulator, BadM/Rrf2 family protein
          [Gluconacetobacter hansenii ATCC 23769]
 gi|295976273|gb|EFG83058.1| transcriptional regulator, BadM/Rrf2 family protein
          [Gluconacetobacter hansenii ATCC 23769]
          Length = 151

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L  RT   I +++  A H  + N +S  +IA+   ++   +  +LQ L ++G++  VRG 
Sbjct: 4  LRDRTVTAIFIMLDIAFHGMHGNTVSATEIAQRSGMARRGIEPLLQVLSRSGLLSGVRGP 63

Query: 61 RGGVRLCRPADQITILDVVKA 81
           GG RL  PA +I + D+ +A
Sbjct: 64 HGGYRLGHPAREILLSDIHQA 84


>gi|83594728|ref|YP_428480.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577642|gb|ABC24193.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++++  YG R L   A       RI  IAE   I   FL +IL  L   G+V + RG+ G
Sbjct: 2   ISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHHGLVVSFRGKNG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L R    I+  +V++  +       C +        DC    +C +  V   A +  
Sbjct: 62  GYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACEDCEGETACRMRLVFGAAYDRM 121

Query: 119 FDVLTQYSIECLVRNR 134
            +VL   S+   +  R
Sbjct: 122 LEVLETTSLGDAMNGR 137


>gi|327191462|gb|EGE58484.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +AE   + + +L K LQ L +A +V+T  G  GG RL R + +I  LD+V+A E
Sbjct: 31 LAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARASSEINFLDIVEAVE 84


>gi|83942219|ref|ZP_00954680.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sulfitobacter sp. EE-36]
 gi|83846312|gb|EAP84188.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sulfitobacter sp. EE-36]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIALQPADRLVNLGDIATRQSISLPYLEQLFVKLRRADLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG RL RPA  I ++D++ A +E
Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDE 85


>gi|281418573|ref|ZP_06249592.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
 gi|281407657|gb|EFB37916.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum JW20]
          Length = 147

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG++ +M  A+++      +  IAE   ISE +L ++   L KA IV++++G
Sbjct: 1  MKMSTKGRYGLQAMMDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE 90
           +GG  L      IT+  +++  E +  V +
Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVD 91


>gi|86608330|ref|YP_477092.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556872|gb|ABD01829.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 146

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +I +IA    I + +L ++L  L + G+V + RG +GG  L R   QI++LDV++A E
Sbjct: 28 QIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGSKGGYFLARAPWQISLLDVIQAIE 85


>gi|188585903|ref|YP_001917448.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350590|gb|ACB84860.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 144

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 16/127 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R+ + +   +Y A+  +Y   +     +++A  ISE +L ++  PL KA I+ + 
Sbjct: 1   MKVSTRSKWALACSLYYAV--NYSKEVIPLKTVSKALGISEKYLEQLSIPLKKADILAST 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG +GG +L    ++IT+  V+ + E   F  +            G   L SV     + 
Sbjct: 59  RGTQGGYKLKYHPEKITVYQVLSSIEPIHFGEDA-------SDQAGEKELLSV----TSE 107

Query: 118 FFDVLTQ 124
           F+D L+Q
Sbjct: 108 FWDELSQ 114


>gi|330817662|ref|YP_004361367.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370055|gb|AEA61411.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 179

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1  MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R A  +T+ D++ A +E     +C
Sbjct: 61 PGGGYNLARRAADVTVADIIIAVDEPLDATQC 92


>gi|313207165|ref|YP_004046342.1| transcriptional regulator, badm/rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|312446481|gb|ADQ82836.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|315022434|gb|EFT35461.1| rrf2 family protein [Riemerella anatipestifer RA-YM]
 gi|325335395|gb|ADZ11669.1| transcriptional regulator, BadM/Rrf2 family protein [Riemerella
           anatipestifer RA-GD]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR   Y  I +  +   +++ +A+     E F  KIL  L K  IV +++G 
Sbjct: 2   FSKACEYGIRACAYITIESMQNRKVKVADVAKKVGTPEAFTAKILSALTKHNIVNSIKGP 61

Query: 61  RGGVRLCRP-ADQITILDVVKATEESFFVAEC---FAS--HKIDCPLVGSCGLTSVLRKA 114
            GG  +    A  I I D+V A +    ++ C   F+S      CPL       SV R  
Sbjct: 62  YGGFEIGEQRAKSIKIKDIVIAIDGHSILSSCSLGFSSCDESNPCPL--HFKYVSV-RNE 118

Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
           L    D  T + +   V+N+ S
Sbjct: 119 LCKMLDTTTLFEMAIDVKNKKS 140


>gi|241206059|ref|YP_002977155.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859949|gb|ACS57616.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 154

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   ++E  V +  SI
Sbjct: 122 IAAILDNMTLEQFVADGGSI 141


>gi|218680758|ref|ZP_03528655.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          894]
          Length = 122

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          CAI    P         +AE   + + +L K LQ L +A +V+T  G  GG RL R + +
Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARSSSE 73

Query: 73 ITILDVVKATE 83
          I  LD+V+A E
Sbjct: 74 INFLDIVEAVE 84


>gi|297199432|ref|ZP_06916829.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces sviceus ATCC 29083]
 gi|197713030|gb|EDY57064.1| iron-sulfur cluster assembly transcription factor IscR
          [Streptomyces sviceus ATCC 29083]
          Length = 152

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R DY +R ++  A+     P +   IA    I   FL  IL  L + GIV++ RG
Sbjct: 1  MRISARADYAVRAVLELAVRQGTEPVKAEAIAAVQDIPHKFLEGILGDLRRGGIVDSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG RL R A  +T+ DV++A +
Sbjct: 61 GGGGYRLAREASAVTVADVIRAVD 84


>gi|254431044|ref|ZP_05044747.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
 gi|197625497|gb|EDY38056.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
          Length = 144

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L K T  GIR L+  A   +      ++A A  + E  L ++L  L +AG+V   RGR G
Sbjct: 2  LAKSTTDGIRALLELATVPERWRSGPELAAAQQLPEPMLEQLLLRLRRAGVVVARRGRLG 61

Query: 63 GVRLCRPADQITILDVVKATE 83
          G RL RPA +I +  V+ A +
Sbjct: 62 GYRLARPAAEIRLATVIAALQ 82


>gi|158335568|ref|YP_001516740.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
          MBIC11017]
 gi|158305809|gb|ABW27426.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
          MBIC11017]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+ + +Y +  L+    H     P RI QIA    I + +L ++L  L ++G+V + R
Sbjct: 1  MELSCKCEYAVLALLSLVDHYPQGEPLRIRQIAAQQHIPDRYLEQLLAILRRSGLVCSQR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G RGG  L R   +IT+L+++   E
Sbjct: 61 GARGGYLLAREPWKITLLEIINCIE 85


>gi|213612431|ref|ZP_03370257.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 87

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG+RL +PA+ I I DVV+   E   +  C +     C +  +C L   L KA+ +F
Sbjct: 6   GENGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSF 61

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
              L  Y++  LV     + K+ 
Sbjct: 62  LKELDNYTLADLVEENQPLYKLL 84


>gi|124267450|ref|YP_001021454.1| BadM/Rrf2 family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260225|gb|ABM95219.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
           petroleiphilum PM1]
          Length = 177

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+    IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHSGPVALAAISSRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R A++IT+ D++ A +E      C           G C +T  L  +LN   
Sbjct: 61  PGGGYSLGRKAEEITVADIIVAVDEPIDATGCGGKENCMGEDSGRC-MTHDLWASLNTKM 119

Query: 119 FDVLTQYSIECLVRNR 134
            + L   S+  LV ++
Sbjct: 120 IEFLDSISLRKLVDDQ 135


>gi|315304491|ref|ZP_07874765.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
 gi|313627139|gb|EFR95998.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE-------ESFFVAECF 92
           ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+A E       +S  +   F
Sbjct: 42  YISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVF 101

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + +  +    G   +TS  R A   + + L    +  LV 
Sbjct: 102 SDYH-EFAESGIHTITSAFRNADKEYANYLYSQKLAVLVE 140


>gi|254423512|ref|ZP_05037230.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7335]
 gi|196191001|gb|EDX85965.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7335]
          Length = 140

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + QIAE   +   +L K+L  L ++ ++ +VRG +GG +L +P+ QI++  +++A  ES 
Sbjct: 15  VRQIAERQQLPAPYLEKLLIELRRSRLINSVRGAQGGYQLAKPSSQISLGQILEAVGESA 74

Query: 87  --FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
               A   +S      +     +TS+L   LN
Sbjct: 75  SSMTAMAVSSPDNSTQVQAEDWVTSMLWNRLN 106


>gi|163792642|ref|ZP_02186619.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
 gi|159182347|gb|EDP66856.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
          Length = 180

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT--EESFFV-----AECF 92
           F+ K+L  L KAG+V    G RGG R+ R A+ IT+LDV  A   +++ F      A C 
Sbjct: 42  FIQKLLTQLEKAGLVTGAEGIRGGWRMARAANAITVLDVADAAKGDDALFKCRNIRARCA 101

Query: 93  ASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
                  P   + G C + +V+  A  A    L  +++  +V
Sbjct: 102 LWDDASPPQAAVSGVCSIHAVMLSAEAAMRQELAAHTLADIV 143


>gi|321313316|ref|YP_004205603.1| putative transcriptional regulator [Bacillus subtilis BSn5]
 gi|320019590|gb|ADV94576.1| putative transcriptional regulator [Bacillus subtilis BSn5]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          I++   +S  +L K+++ LV+AG+ E++ G +GG  L +P   IT+ DV +A E
Sbjct: 31 ISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVE 84


>gi|294677664|ref|YP_003578279.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|6136499|sp|O68025|Y166_RHOCA RecName: Full=Putative HTH-type transcriptional regulator rrf2-like
 gi|3128259|gb|AAC16111.1| hypothetical protein [Rhodobacter capsulatus SB 1003]
 gi|294476484|gb|ADE85872.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 150

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +T++  Y ++ L+  A     D P    I +IA      + FL  IL  L KAG+V ++R
Sbjct: 2   ITQKMKYALKALLELADEARRDSPQALTIEEIATRSGTPKRFLEHILLDLRKAGVVASIR 61

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKA 114
           GR GG  L +    ++I ++V+  +       C +        DC    +C +  V  + 
Sbjct: 62  GRSGGYSLLKAPRDVSISELVRRIDGPIAPLPCLSRSAYQPCDDCHDEAACRIRKVFAEV 121

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
             ++  ++   ++E ++   +   K+  
Sbjct: 122 FWSYLVLIDSLTLEDMLAAGNPAAKLLE 149


>gi|320531098|ref|ZP_08032127.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|320136680|gb|EFW28633.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +  D     S+ ++ +     + + +IL  L +AG++  +RG
Sbjct: 12  MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRIMRG 71

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           R GG  L RP  +IT+ DV  A  ES      F+ H+   P
Sbjct: 72  REGGAYLMRPLSEITLADVFHAV-ESLGGDTLFSFHENPNP 111


>gi|148378286|ref|YP_001252827.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
 gi|153933591|ref|YP_001382687.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936117|ref|YP_001386238.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|153937936|ref|YP_001389653.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|168177627|ref|ZP_02612291.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|170754327|ref|YP_001779938.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|226947508|ref|YP_002802599.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148287770|emb|CAL81836.1| Rrf2-family transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929635|gb|ABS35135.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932031|gb|ABS37530.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|152933832|gb|ABS39330.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|169119539|gb|ACA43375.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|182670341|gb|EDT82315.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|226842307|gb|ACO84973.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295317743|gb|ADF98120.1| rrf2 family protein [Clostridium botulinum F str. 230613]
 gi|322804550|emb|CBZ02101.1| rrf2 family transcriptional regulator, group III [Clostridium
           botulinum H04402 065]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L +AG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115
            GG  L +  DQIT+LDV +A  +     E F  H    I+CP+  +    +  VL  A 
Sbjct: 61  -GGAYLLKDLDQITLLDVYRAV-DVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQ 118

Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139
            A   VL   ++E +V   R  IKK
Sbjct: 119 EAMEQVLENVTMEYIVTGIRKKIKK 143


>gi|28210311|ref|NP_781255.1| hypothetical protein CTC00575 [Clostridium tetani E88]
 gi|28202747|gb|AAO35192.1| conserved protein (RRF2 family protein) [Clostridium tetani E88]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++T+  DYGIR ++  A   +     ++ IAE   I   FL K+L+ L++AGIV + RG
Sbjct: 4   MNITQEADYGIRAVLILAKEGEGEKLDAKTIAERGNIPLRFLLKLLRKLIQAGIVRSYRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
             GG  L + ++ I + +V+++ +    V  C       +      C +   LRK  N F
Sbjct: 64  VNGGYALNKHSEDINLKEVIESIDGPIAVNRCITDKDFCNAKKTEICVVHKELRKVQNIF 123

Query: 119 FDVLTQYSIECL 130
              L + +   L
Sbjct: 124 VKELEKITFSKL 135


>gi|330990699|ref|ZP_08314655.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329762139|gb|EGG78627.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 79

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 58  RGRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           RGR GGV L RP   I +  VV+  E E   +  C       C L  +C L  + R+A +
Sbjct: 4   RGRNGGVSLARPPKDINVGHVVRLMETEGEVIKGCAPLQGRPCVLADACRLRHLARQATD 63

Query: 117 AFFDVLTQYSIECLV 131
           AF  VL   S+  L+
Sbjct: 64  AFMAVLDGMSVHDLL 78


>gi|257054249|ref|YP_003132081.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
 gi|256584121|gb|ACU95254.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
           D P   +++A+   +   +L K LQ L +  I+ +V G RGG RL R   +I++LDVV A
Sbjct: 21  DEPVSTARLADIYRLPSAYLNKQLQALAREKILVSVPGARGGFRLARDPAEISLLDVVVA 80

Query: 82  TE---ESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAF 118
            E   E+F  A+   +     P V     C ++  +R+A  A+
Sbjct: 81  VEGKAEAFRCAQILRNGPGGDPDVDYSSYCVVSQSMRRAELAW 123


>gi|194289994|ref|YP_002005901.1| transcriptional regulator hth rrf2-type DNA-binding domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193223829|emb|CAQ69836.1| putative transcriptional regulator, HTH rrf2-type DNA-binding
           domain [Cupriavidus taiwanensis LMG 19424]
          Length = 144

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A  +  P   S IA +   +   + +++  L +AG+V T  G 
Sbjct: 1   MSTSSRFAVAVHILTLLA-SSAEPLPSSLIAGSVGTNPALIRRLVGQLAEAGLVATTMGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            GG  L RPA  IT+L+V +  E +  +A   ++    C LVG   +T  LRK
Sbjct: 60  TGGATLARPAASITLLEVFRVVETTALIALHQSAPNPAC-LVGRE-ITGALRK 110


>gi|167745831|ref|ZP_02417958.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
 gi|317470556|ref|ZP_07929944.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|167654695|gb|EDR98824.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
 gi|316902071|gb|EFV23997.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +++ TDY +R+L   A+ +     I +I       + F ++I++ L  AG +   RG 
Sbjct: 1  MLISRETDYALRILR--ALSDGKKRSIEEICSLEATPKQFAYRIIKKLETAGWIIITRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG RL      I++  +++     F +  CF
Sbjct: 59 EGGCRLTADLHDISLFQLMQGLGSGFGINACF 90


>gi|154148775|ref|YP_001406452.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
          ATCC BAA-381]
 gi|153804784|gb|ABS51791.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
          hominis ATCC BAA-381]
          Length = 137

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTKR  Y   +++  +  +   P  I  IA+    S+ +L + +  L KAG+++ +RG  
Sbjct: 4  LTKRGVYAAIIMLEISKGDKTAPVSIKSIADTLGKSKNYLEQAINALRKAGLIKALRGPN 63

Query: 62 GGVRLCRPADQITILDVVKATE 83
          GG  L +  ++IT  D+  ATE
Sbjct: 64 GGYFLLKKPNEITFGDIFNATE 85


>gi|330992283|ref|ZP_08316231.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
          SXCC-1]
 gi|329760482|gb|EGG76978.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
          SXCC-1]
          Length = 149

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 1  MH-LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          MH + +RT   + +++  A +   + P    +IAE   ++   L  ILQ L +AG+++ V
Sbjct: 1  MHSIRERTAIALVIMLDVAFYGTAERPVSTIEIAERSSLARRGLEPILQGLARAGLLKGV 60

Query: 58 RGRRGGVRLCRPADQITILDV 78
          RG  GG RL  PA +I + D+
Sbjct: 61 RGPHGGYRLALPAREILLSDI 81


>gi|255262381|ref|ZP_05341723.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
 gi|255104716|gb|EET47390.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
          Length = 134

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + IA     + + + ++L  L +AG++ + +G  GG +L R  + IT+ DV  A +ES  
Sbjct: 28  ADIANHAGTNPVVVRRVLGKLREAGMLTSEKGHAGGWKLARAPETITLADVYLALDESLI 87

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
             E       D P V SC + + L   +      + Q  IE L
Sbjct: 88  ATET------DNP-VSSCSVENALHHRVTGVMRDIEQSLIERL 123


>gi|223040323|ref|ZP_03610599.1| RRF2 family protein [Campylobacter rectus RM3267]
 gi|222878392|gb|EEF13497.1| RRF2 family protein [Campylobacter rectus RM3267]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + ++    I +L+ C    D  N    +A     + + +  I++ L  A ++    G 
Sbjct: 1   MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTVGTNPVIVRNIIRLLKSANLINVSAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVG--SCGLTSVLRKAL 115
            GG  L +  DQIT+ D+  A  E       F  HK     CPL G     LT     A 
Sbjct: 61  -GGASLAKKPDQITLFDIFSAVNEG--ENGIFKIHKNSPPPCPLGGRIEALLTPKFASAQ 117

Query: 116 NAFFDVLTQYSIECLV 131
            A FD L   +++ L+
Sbjct: 118 RAMFDSLAGVNLQNLL 133


>gi|170760968|ref|YP_001785621.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407957|gb|ACA56368.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L KAG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKKAGLVSVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKAL 115
            GG  L +  DQIT+LDV +A  E     E F  H    I+CP+  +    +  +L  A 
Sbjct: 61  -GGAYLLKDLDQITLLDVYRAV-EVVKEGELFQFHDSPNINCPIGANIQSVMEGILLNAQ 118

Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139
            A   VL   ++E +V   R  I+K
Sbjct: 119 EAMEQVLENVTMEYVVAGIRKKIEK 143


>gi|110597184|ref|ZP_01385473.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
          13031]
 gi|110341375|gb|EAT59840.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
          13031]
          Length = 140

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LTK TDY IR L+  A           IA    I   FL ++LQ +++  ++ +  G RG
Sbjct: 4  LTKNTDYAIRALLALAAEKGSYLSAKAIASGQDIPYQFLRRLLQEMIRHNLIVSKEGARG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          G  L +  D IT+  +++  +    V+EC    +I
Sbjct: 64 GFMLEKDPDAITVTQLIEIFQGKVQVSECMFRKQI 98


>gi|229552795|ref|ZP_04441520.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258540586|ref|YP_003175085.1| transcriptional regulator Rrf2 family [Lactobacillus rhamnosus Lc
           705]
 gi|229313777|gb|EEN79750.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257152262|emb|CAR91234.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus Lc
           705]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A H DY + I +I+E   I    + KI   L K+GI+ +  G  GG+RL +    IT+ +
Sbjct: 23  AQHEDYLS-IQKISEMLNIPVPSIKKISSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCG---------LTSVLRKALNAFFDVLTQYSIE 128
           ++ A E +   A  F  H+   P     G          T+VL +A +A   VL Q SI 
Sbjct: 82  ILTAIEGT---APLFKLHQEIDPAAFVNGERVTSWLTASTNVLNRAEDAMVQVLKQTSIA 138

Query: 129 CLVR 132
            L  
Sbjct: 139 DLAE 142


>gi|154484942|ref|ZP_02027390.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
          27560]
 gi|149733895|gb|EDM50014.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
          27560]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           NDY      +A +  ++ + + KIL  L  A ++E  RG  GG ++ RP ++IT+LDV 
Sbjct: 21 ENDYKITSDFLAGSTNVNPVIIRKILGQLKGADLIEVARGT-GGAKITRPLNEITLLDVY 79

Query: 80 KATE 83
          KA E
Sbjct: 80 KAVE 83


>gi|23014795|ref|ZP_00054594.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 136

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K T   +  ++  A   D     ++IAE   IS   L K+L+ L + G+VE VRG 
Sbjct: 1  MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60

Query: 61 RGGVRLCRPADQITILDVVK 80
           GG R      + T+LD+++
Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ 80


>gi|90021059|ref|YP_526886.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
          degradans 2-40]
 gi|89950659|gb|ABD80674.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
          degradans 2-40]
          Length = 164

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L ++ +V +VRG
Sbjct: 1  MRLTTKGRYAVTAMLDLALHAQSGPVSLADISRRQQISLSYLEQLFAKLRQSTLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG +L R A  + +  ++ A  ES     C
Sbjct: 61 PGGGYKLNRSAADVHVAQIIDAVNESVDATNC 92


>gi|154252525|ref|YP_001413349.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156475|gb|ABS63692.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 148

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++  Y ++ ++  A   +    + + IAE   +   FL  IL  L K G+V + RG+ 
Sbjct: 2   LSQKAKYALKAMIALATQEEGDLLQAADIAERQNVPRKFLELILLDLRKHGLVRSQRGKF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC--FASHK--IDCPLVGSCGLTSVLRKALNA 117
           GG  L +PAD IT   V++  +       C     ++   DC    SC +   +R+  +A
Sbjct: 62  GGYALAKPADAITFGQVIRIMDGPLAPIPCASLTGYRRCADCRDEKSCAVRRTMREVRDA 121

Query: 118 FFDVLTQYSI 127
              +L   +I
Sbjct: 122 AAAILDGTTI 131


>gi|83309299|ref|YP_419563.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944140|dbj|BAE49004.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 151

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 4  TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +K+  + I  ++  A H    P +  +I     I   +L + LQ LV+AGI+  VRG RG
Sbjct: 5  SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVRGPRG 64

Query: 63 GVRLCRPADQITILDVVK 80
          G RL R   +I++ +VV+
Sbjct: 65 GYRLARERRRISVGEVVR 82


>gi|163783457|ref|ZP_02178448.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881221|gb|EDP74734.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 144

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          H D   +  +IA+A  I + FL KIL  L +  ++ +V+G +GG  L    +++T+ DVV
Sbjct: 20 HRDRLVKADEIAKAQNIPKPFLSKILHELARRDVLHSVKGPKGGFALKTDPEKLTMWDVV 79

Query: 80 KATEESFFVAEC 91
              E +    C
Sbjct: 80 SLMGEDYRFQAC 91


>gi|317123685|ref|YP_004097797.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Intrasporangium calvum DSM 43043]
 gi|315587773|gb|ADU47070.1| transcriptional regulator, BadM/Rrf2 family [Intrasporangium calvum
           DSM 43043]
          Length = 154

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R DY +R   +L   A     P  I  +A    +   FL  I   L +A +V + 
Sbjct: 1   MDISARVDYAVRAMLILAEAAASGSGPVSIEALATEQELPRKFLEAIFADLRRAELVLSR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RP  +I++ DV +A +           H+     V    L S+      +
Sbjct: 61  RGALGGYALARPQREISVGDVFRAVDGPLAEVRGLRPHETSYAGVAQH-LPSLWVAVRAS 119

Query: 118 FFDVLTQYSIECL 130
             +VL   S+E L
Sbjct: 120 LREVLDGTSLEAL 132


>gi|309779547|ref|ZP_07674308.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921788|gb|EFP67424.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
          Length = 145

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-SAEGPVPSSLIAGSVGTNPALIRRLVAQLADAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +  E    +A
Sbjct: 60 TGGATLARPADRITLLDVFRVVEAPVLIA 88


>gi|78063394|ref|YP_373302.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77971279|gb|ABB12658.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 163

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  IH D    P     IA   C + + + ++L  L   G V++ +G  G
Sbjct: 19  RTDSRLSRMLHALIHMDQVDGPMTSEAIATMLCTNPVVVRRLLGGLRDRGYVQSEKGHGG 78

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A      
Sbjct: 79  GWVLSVALDDITLLDVYRAVGEPPLFSDLVTDDEAECLVEQAVNAHLSATLKEAETTLLA 138

Query: 121 VLTQYSIECLVRN 133
              + ++  L R+
Sbjct: 139 RFGEVTLGMLSRD 151


>gi|83955454|ref|ZP_00964085.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sulfitobacter sp. NAS-14.1]
 gi|83840098|gb|EAP79273.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sulfitobacter sp. NAS-14.1]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIALQPADRLVNLGDIAARQSISLPYLEQLFVKLRRAELVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG RL RPA  I ++D++ A +E
Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDE 85


>gi|255037279|ref|YP_003087900.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254950035|gb|ACT94735.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 147

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+  Y ++ L   A  +   P  IS IAE   I + FL  IL  L   G++++ +G+ 
Sbjct: 2   ISKKAKYALKALKVLAEQYGKGPVLISYIAEKEKIPKKFLEAILLDLRNNGVLQSQKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  P  ++    V++  +     A C    F     DC    +C L +VL +  +A
Sbjct: 62  GGYLLRVPPGEVNFSKVLRIIDGPIAPALCVSMFFYGKCDDCKDEETCSLRTVLERWRDA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL + ++  L++  ++
Sbjct: 122 NLAVLDKTTLSDLLQAENA 140


>gi|206562460|ref|YP_002233223.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
 gi|198038500|emb|CAR54458.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  IH D    P     IA   C + + + ++L  L   G V++ +G  G
Sbjct: 2   RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L    D IT+LDV +A  E    ++      ++C +  +    L++ L++A  +   
Sbjct: 62  GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDALECLVEQAVNAHLSATLKEAEASLLA 121

Query: 121 VLTQYSIECLVRN 133
              + ++  L R+
Sbjct: 122 RFGEVTLGMLSRD 134


>gi|332687403|ref|YP_004457176.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
           35311]
 gi|332371412|dbj|BAK22367.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
           35311]
          Length = 141

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +++   + +D   +  +I++   +S  +L KI + L  A ++ ++  + GG  L +  D+
Sbjct: 14  IMILAKLPDDGALKSQEISQRMNVSHSYLLKIAKKLKDAELINSIASKTGGYVLNKSVDK 73

Query: 73  ITILDVVKATEESFFVAECFASHKIDC 99
           I+ LD++ ATE      E    H ID 
Sbjct: 74  ISFLDILHATEGKNSFIEGIDFHPIDS 100


>gi|170697290|ref|ZP_02888384.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|170137910|gb|EDT06144.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  IH D    P     IA   C + + + ++L  L  +G V++ +G  G
Sbjct: 2   RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA---LNA 117
           G  L    D IT+LDV +A  E    ++  +    +C +  +    L++ L++A   L A
Sbjct: 62  GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLLA 121

Query: 118 FFDVLT 123
            FD +T
Sbjct: 122 RFDEVT 127


>gi|78187526|ref|YP_375569.1| hypothetical protein Plut_1672 [Chlorobium luteolum DSM 273]
 gi|78167428|gb|ABB24526.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
           DSM 273]
          Length = 177

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L K TDY +R L+  A           IA    I   FL ++LQ L++  +V +  G  G
Sbjct: 24  LNKNTDYAVRALLSLAGSQGVYLSAKTIATEQDIPYQFLRRLLQELIRHRLVVSREGASG 83

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
           G +L R  D I + ++++  +    V+EC    K+
Sbjct: 84  GFKLDRDPDGIALRELIEIFQGPVQVSECLFRKKL 118


>gi|118445083|ref|YP_879134.1| rrf2 family protein ( transcriptional regulator) [Clostridium
          novyi NT]
 gi|118135539|gb|ABK62583.1| rrf2 family protein (putative transcriptional regulator)
          [Clostridium novyi NT]
          Length = 139

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T+  DY +R ++Y C +          I+E   I   FL KIL+ L  AGIVE+ RG
Sbjct: 1  MKITQEVDYALRTVLYLCKLGYGEKIEAKNISETENIPIRFLLKILRKLKHAGIVESYRG 60

Query: 60 RRGGVRLCR 68
            GG  L +
Sbjct: 61 VNGGYALNK 69


>gi|83312490|ref|YP_422754.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82947331|dbj|BAE52195.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 136

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K T   +  ++  A   D     ++IAE   IS   L K+L+ L + G+VE VRG 
Sbjct: 1  MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60

Query: 61 RGGVRLCRPADQITILDVVK 80
           GG R      + T+LD+++
Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ 80


>gi|237747556|ref|ZP_04578036.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229378918|gb|EEO29009.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 155

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++    H +  P  ++ I+E   IS  +L ++   L +  +V+++RG
Sbjct: 1  MRLTTKGRFAVTAMIDLTRHQETGPVSLAGISERQDISVAYLEQLFSKLRRKNLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L   A  IT+ D+V A +E   V  C
Sbjct: 61 PGGGYILANDAADITVADIVFAVDEPLDVTRC 92


>gi|188997194|ref|YP_001931445.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
          sp. YO3AOP1]
 gi|188932261|gb|ACD66891.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
          sp. YO3AOP1]
          Length = 142

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          IR L+Y AI N   N +S  +IAE   +   +L K +Q LVK+GI+E+ RG +GG+   +
Sbjct: 10 IRALIYLAI-NQEKNYVSVKEIAEKLNLPFHYLAKNVQKLVKSGILESYRGPKGGIVFKQ 68

Query: 69 P 69
          P
Sbjct: 69 P 69


>gi|171911244|ref|ZP_02926714.1| hypothetical protein VspiD_08720 [Verrucomicrobium spinosum DSM
          4136]
          Length = 137

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++K+ +Y +R VL            I  +AE   I   FL +IL  L K GI+ + RG
Sbjct: 1  MKISKKAEYALRAVLAMSRSATGTIFSIQSLAEEERIPLKFLEQILLILRKGGIMHSRRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
            GG +L RPA +IT+ ++++
Sbjct: 61 AGGGYQLVRPASRITVGEILE 81


>gi|34581609|ref|ZP_00143089.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262994|gb|EAA26498.1| unknown [Rickettsia sibirica 246]
          Length = 128

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  +++++    IS  +L +I   L KA +V+ +RG +GG  L    ++I I D++ A  
Sbjct: 14 PVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYILIGNLEEIKISDIMDAVN 73

Query: 84 ESFFVAECF 92
          E+F +  C+
Sbjct: 74 ENFIMTTCY 82


>gi|304311762|ref|YP_003811360.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
 gi|301797495|emb|CBL45715.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + + K TDY + +LM C A       R+  +A+   + +  + K++  LV A +V + RG
Sbjct: 2   LRIGKLTDYAL-ILMNCMATRPAQLWRMELLADTTRLPQPTVRKLMGQLVAANLVRSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            RGG +L R  + I++ +++ A E    + EC       C +V SC
Sbjct: 61  ARGGYQLSRLPNLISMAEIIIAIEGPIAITEC-------CEVVPSC 99


>gi|167748199|ref|ZP_02420326.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
 gi|167652191|gb|EDR96320.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
          Length = 184

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    +  L+  A   D       +AE+   + + +  I   L KAGI+   RG 
Sbjct: 13  MRVSTQFTIAVHALIMIAYFPDIRVTSEMVAESVGNNPVIIRNIYGKLKKAGILSIQRG- 71

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--------LR 112
            G   L + A++IT+ DV +A E    V E F   K    L G+C + S         L+
Sbjct: 72  TGATSLTKTANEITLWDVYQAVETD-AVDEIF---KFSDTLSGACPVGSSIKELLFIHLQ 127

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +A+N+  D L++ +IE L   R  I++ +N
Sbjct: 128 EAVNSLKDSLSKTTIEEL---RFEIERHYN 154


>gi|291008165|ref|ZP_06566138.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 150

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 6  RTDYGIRVLMYCAIH-NDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R    ++V+++ A+   D    +S  Q+A     +   + K+L PL   G+V   +GR G
Sbjct: 8  RFSRALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAG 67

Query: 63 GVRLCRPADQITILDVVK 80
          G RL RPAD+IT+ ++ +
Sbjct: 68 GARLGRPADRITLAEIYR 85


>gi|253576663|ref|ZP_04853990.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843873|gb|EES71894.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 145

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +L    I  D       IA +   + + + +I+  L KAG+VE VR  
Sbjct: 1   MTISSRFSVAIHILSLLEISKDEICTSEYIAGSVNTNPVVIRRIMGMLSKAGLVE-VRTG 59

Query: 61  RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCP--LVG---SCGLTSVLR 112
             G +L R  DQIT+LDV +A    EE       FA H    P  LVG      +  +  
Sbjct: 60  VAGAKLSRQLDQITLLDVYRAVHVVEEDGL----FAVHDQTNPDCLVGKNIQAAIEPIFS 115

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
           KA  A  + L   +++ +V   S +  
Sbjct: 116 KAQKAMENTLAAVTLQDVVNEISVVNN 142


>gi|86358381|ref|YP_470273.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
 gi|86282483|gb|ABC91546.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
          Length = 162

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 17 CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          CAI    P         +AE   + + +L K LQ L +A +V+T  G  GG RL R   +
Sbjct: 14 CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARSPSE 73

Query: 73 ITILDVVKATE 83
          I  LD+V+A E
Sbjct: 74 INFLDIVEAVE 84


>gi|186685046|ref|YP_001868242.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467498|gb|ACC83299.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 145

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+  D PNR             +L ++L  L + G+++++RG +GG  L R   +IT+LD
Sbjct: 33  AVLQDIPNR-------------YLEQLLATLRRGGLIKSIRGAKGGYVLARDPGKITVLD 79

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
                E S  V     S      + G   +  V ++A  A   VL +Y+++ L   RS
Sbjct: 80  AFSCMEGSDIVVS--DSEPTPNTVEGEL-IQEVWQEARQAANSVLEKYTLQDLCERRS 134


>gi|330820621|ref|YP_004349483.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
          BSR3]
 gi|327372616|gb|AEA63971.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
          BSR3]
          Length = 148

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  IH    + P     IA   C + + + ++L  L  AG V++ +G  G
Sbjct: 2  RTDSRLSRMLHALIHMNRAEGPLTSEAIAAMLCTNAVVVRRLLGGLRDAGYVQSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L    D IT+LDV +A  E    +E  +     C
Sbjct: 62 GWTLAVSLDAITLLDVYRAVGEPPLFSELVSEDDPQC 98


>gi|144901312|emb|CAM78176.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
            + +  P     IA +   + + + ++L  L KAG+V ++RG  GG  L +  + IT+LD
Sbjct: 18  GMSDGQPLTSDWIAGSVNTNPVVIRRLLSSLAKAGLVTSIRGSNGGSVLAQLPEAITLLD 77

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           + +A +E    A         CP VG  G+  VLR+ ++
Sbjct: 78  IQRAVDEDTEPALHNQPPNQKCP-VGR-GIQPVLRRVID 114


>gi|134101553|ref|YP_001107214.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133914176|emb|CAM04289.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 146

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 6  RTDYGIRVLMYCAIH-NDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R    ++V+++ A+   D    +S  Q+A     +   + K+L PL   G+V   +GR G
Sbjct: 4  RFSRALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAG 63

Query: 63 GVRLCRPADQITILDVVK 80
          G RL RPAD+IT+ ++ +
Sbjct: 64 GARLGRPADRITLAEIYR 81


>gi|325971574|ref|YP_004247765.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Spirochaeta sp. Buddy]
 gi|324026812|gb|ADY13571.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp.
          Buddy]
          Length = 138

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R  YG+R+L+  A H N+ P  ++ +A+   +SE +L ++   L + G + +V+G
Sbjct: 1  MKISTRGRYGLRLLVDIAEHSNEGPIALTVVAKRQDLSEKYLQQVALLLTRGGFLTSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R    + I DV+   E
Sbjct: 61 SGGGYLLERSPASMMIYDVLDLLE 84


>gi|294788961|ref|ZP_06754201.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
           muelleri ATCC 29453]
 gi|294483063|gb|EFG30750.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
           muelleri ATCC 29453]
          Length = 148

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  D+  +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L + ADQI I  ++ A E+      C  S K +C     C    L + L   +N
Sbjct: 61  PGGGYILGKAADQINIAQIIAAAEDCLDATLC--SGKANCQSGSPCLTHNLWANLNHTIN 118

Query: 117 AFFDVLTQYSI 127
           ++   +T  S+
Sbjct: 119 SYLSSITLASL 129


>gi|15608427|ref|NP_215803.1| hypothetical protein Rv1287 [Mycobacterium tuberculosis H37Rv]
 gi|15840735|ref|NP_335772.1| hypothetical protein MT1325 [Mycobacterium tuberculosis CDC1551]
 gi|31792479|ref|NP_854972.1| hypothetical protein Mb1318 [Mycobacterium bovis AF2122/97]
 gi|121637215|ref|YP_977438.1| hypothetical protein BCG_1346 [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148661074|ref|YP_001282597.1| hypothetical protein MRA_1295 [Mycobacterium tuberculosis H37Ra]
 gi|148822504|ref|YP_001287258.1| hypothetical protein TBFG_11313 [Mycobacterium tuberculosis F11]
 gi|167969611|ref|ZP_02551888.1| hypothetical protein MtubH3_16956 [Mycobacterium tuberculosis
          H37Ra]
 gi|215403126|ref|ZP_03415307.1| hypothetical protein Mtub0_05401 [Mycobacterium tuberculosis
          02_1987]
 gi|215410923|ref|ZP_03419731.1| hypothetical protein Mtub9_06240 [Mycobacterium tuberculosis
          94_M4241A]
 gi|215426606|ref|ZP_03424525.1| hypothetical protein MtubT9_09527 [Mycobacterium tuberculosis
          T92]
 gi|215430171|ref|ZP_03428090.1| hypothetical protein MtubE_05718 [Mycobacterium tuberculosis
          EAS054]
 gi|215445463|ref|ZP_03432215.1| hypothetical protein MtubT_05813 [Mycobacterium tuberculosis T85]
 gi|218752991|ref|ZP_03531787.1| hypothetical protein MtubG1_05905 [Mycobacterium tuberculosis GM
          1503]
 gi|219557185|ref|ZP_03536261.1| hypothetical protein MtubT1_07730 [Mycobacterium tuberculosis
          T17]
 gi|224989690|ref|YP_002644377.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253799668|ref|YP_003032669.1| hypothetical protein TBMG_02694 [Mycobacterium tuberculosis KZN
          1435]
 gi|254231544|ref|ZP_04924871.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364183|ref|ZP_04980229.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
          Haarlem]
 gi|254550293|ref|ZP_05140740.1| hypothetical protein Mtube_07514 [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|260186223|ref|ZP_05763697.1| hypothetical protein MtubCP_09373 [Mycobacterium tuberculosis
          CPHL_A]
 gi|260200337|ref|ZP_05767828.1| hypothetical protein MtubT4_09463 [Mycobacterium tuberculosis
          T46]
 gi|260204542|ref|ZP_05772033.1| hypothetical protein MtubK8_09578 [Mycobacterium tuberculosis
          K85]
 gi|289442725|ref|ZP_06432469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289446881|ref|ZP_06436625.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554924|ref|ZP_06444134.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
          605]
 gi|289569296|ref|ZP_06449523.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573949|ref|ZP_06454176.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
 gi|289745032|ref|ZP_06504410.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
 gi|289749839|ref|ZP_06509217.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753363|ref|ZP_06512741.1| conserved hypothetical protein [Mycobacterium tuberculosis
          EAS054]
 gi|289757386|ref|ZP_06516764.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761441|ref|ZP_06520819.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|294994844|ref|ZP_06800535.1| hypothetical protein Mtub2_10117 [Mycobacterium tuberculosis 210]
 gi|297633836|ref|ZP_06951616.1| hypothetical protein MtubK4_06924 [Mycobacterium tuberculosis KZN
          4207]
 gi|297730823|ref|ZP_06959941.1| hypothetical protein MtubKR_07014 [Mycobacterium tuberculosis KZN
          R506]
 gi|298524790|ref|ZP_07012199.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306775455|ref|ZP_07413792.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
          SUMu001]
 gi|306781632|ref|ZP_07419969.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
          SUMu002]
 gi|306784008|ref|ZP_07422330.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
          SUMu003]
 gi|306807174|ref|ZP_07443842.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
          SUMu007]
 gi|306967373|ref|ZP_07480034.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
          SUMu009]
 gi|307079278|ref|ZP_07488448.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
          SUMu011]
 gi|307083848|ref|ZP_07492961.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
          SUMu012]
 gi|313658155|ref|ZP_07815035.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
          tuberculosis KZN V2475]
 gi|54040094|sp|P67160|Y1318_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb1318
 gi|54042641|sp|P67159|Y1287_MYCTU RecName: Full=Putative HTH-type transcriptional regulator
          Rv1287/MT1325
 gi|1322411|emb|CAA97753.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880926|gb|AAK45586.1| Rrf2 family protein [Mycobacterium tuberculosis CDC1551]
 gi|31618068|emb|CAD94179.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492862|emb|CAL71333.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124600603|gb|EAY59613.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149697|gb|EBA41742.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
          Haarlem]
 gi|148505226|gb|ABQ73035.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148721031|gb|ABR05656.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224772803|dbj|BAH25609.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|253321171|gb|ACT25774.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
          1435]
 gi|289415644|gb|EFD12884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289419839|gb|EFD17040.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439556|gb|EFD22049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
          605]
 gi|289538380|gb|EFD42958.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
 gi|289543050|gb|EFD46698.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685560|gb|EFD53048.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
 gi|289690426|gb|EFD57855.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289693950|gb|EFD61379.1| conserved hypothetical protein [Mycobacterium tuberculosis
          EAS054]
 gi|289708947|gb|EFD72963.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|289712950|gb|EFD76962.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494584|gb|EFI29878.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308216075|gb|EFO75474.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
          SUMu001]
 gi|308325593|gb|EFP14444.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
          SUMu002]
 gi|308331243|gb|EFP20094.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
          SUMu003]
 gi|308346415|gb|EFP35266.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
          SUMu007]
 gi|308354987|gb|EFP43838.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
          SUMu009]
 gi|308362898|gb|EFP51749.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
          SUMu011]
 gi|308366483|gb|EFP55334.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
          SUMu012]
 gi|323720243|gb|EGB29342.1| hypothetical protein TMMG_01982 [Mycobacterium tuberculosis
          CDC1551A]
 gi|326902908|gb|EGE49841.1| hypothetical protein TBPG_00763 [Mycobacterium tuberculosis
          W-148]
 gi|328459414|gb|AEB04837.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
          4207]
          Length = 161

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ + +Y +R ++  A   +    +   +A A  I   FL  IL  L    +V + RG
Sbjct: 1  MRMSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60 RRGGVRLCRPADQITILDVVK 80
          R GG  L RP  +I+I DV++
Sbjct: 61 REGGYELARPGTEISIADVLR 81


>gi|300312800|ref|YP_003776892.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075585|gb|ADJ64984.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L++     D P    +IA     + + + +    L +AGIV + +G 
Sbjct: 1  MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60

Query: 61 RGGVRLCRPADQITILDVVKATEESF 86
           GG  L RP ++I++L V +A  E  
Sbjct: 61 GGGWSLARPMEEISLLQVQQALGERL 86


>gi|58038586|ref|YP_190550.1| putative transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001000|gb|AAW59894.1| Putative transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 160

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L+K  DY   +L++   H       + +A    + E  + K+L+ L  +G+V + RG 
Sbjct: 2   LRLSKLADYATVLLVHLGRHEGLAT-AAALAVETGVPEPTVAKLLKGLASSGLVLSHRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL    + +T+  V+ A +    +  C      +C     CGL+       +A   
Sbjct: 61  RGGYRLSSELETVTVATVIAAVDGPIAITACCDGR--ECEHSSLCGLSGQWDVVNDAILK 118

Query: 121 VLTQYSIECLVRN 133
            L   ++  + R+
Sbjct: 119 TLNSITLADMGRH 131


>gi|84503551|ref|ZP_01001602.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanicola batsensis HTCC2597]
 gi|84388041|gb|EAQ01089.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Oceanicola batsensis HTCC2597]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+  +     +S +A+   IS  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIALQPEGGLVTLSDVAKRQNISLPYLEQLFVKLRRAEVVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
            GG RL RPA +I +++V+ A +E+ 
Sbjct: 61 PGGGYRLARPAAEIRVIEVLAAVDETI 87


>gi|207724271|ref|YP_002254668.1| cog1959, predicted transcriptional regulator protein [Ralstonia
          solanacearum MolK2]
 gi|206589487|emb|CAQ36448.1| cog1959, predicted transcriptional regulator protein [Ralstonia
          solanacearum MolK2]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +  E    +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88


>gi|255322125|ref|ZP_05363272.1| RRF2 family protein [Campylobacter showae RM3277]
 gi|255300823|gb|EET80093.1| RRF2 family protein [Campylobacter showae RM3277]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + ++    I +L+ C    D  N    +A     + + +  I++ L  A ++    G 
Sbjct: 12  MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTIGTNPVIVRNIIRLLKSANLINVSAGT 71

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVG--SCGLTSVLRKAL 115
            GG  L +  +QIT+ D+  A  E     + F  HK     CPL G     LT     A 
Sbjct: 72  -GGASLAKKPEQITLFDIFSAVNEG--ENDIFKIHKNSPPPCPLGGRIEALLTPKFGSAQ 128

Query: 116 NAFFDVLTQYSIECLV 131
            A FD L   +++ L+
Sbjct: 129 QAMFDSLAGVNLQNLL 144


>gi|149370370|ref|ZP_01890059.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
          eubacterium SCB49]
 gi|149355921|gb|EDM44478.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
          eubacterium SCB49]
          Length = 144

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K   YGI+  +Y A  +    R S  +IAEA      F  K+LQ L KA I+   +G 
Sbjct: 2  FSKTCRYGIKATIYIAQQSQEGKRASLKEIAEAIDSPVAFTAKVLQFLSKAAIINATKGF 61

Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAEC 91
           GG  + +   ++IT+  +VKA +      EC
Sbjct: 62 NGGYSIEKELLEKITLKQIVKAIDGDQLFEEC 93


>gi|153209325|ref|ZP_01947344.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218766|ref|YP_002305553.1| cysteine desulfurase activator complex subunit SufB [Coxiella
           burnetii CbuK_Q154]
 gi|120575396|gb|EAX32020.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013028|gb|ACJ20408.1| ABC transporter-associated protein [Coxiella burnetii CbuK_Q154]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG 
Sbjct: 2   LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L R    I+I D++ A +    + EC +     C     CG+    +      FD
Sbjct: 62  NGGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120

Query: 121 VL 122
           VL
Sbjct: 121 VL 122


>gi|312194978|ref|YP_004015039.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226314|gb|ADP79169.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V + RG 
Sbjct: 1  MQISARADYALRALLTLAASDGGLVKGETLASAQDLPLRFLENILTDLRRSGLVASRRGA 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG +L RPA +I +  V++AT+
Sbjct: 61 EGGYQLARPAAEIDVATVIRATD 83


>gi|295835500|ref|ZP_06822433.1| Rrf2 family protein [Streptomyces sp. SPB74]
 gi|197698596|gb|EDY45529.1| Rrf2 family protein [Streptomyces sp. SPB74]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            QIA +   + + + ++L  + +AG+V + RG   G RL RP + +T+ DV +A E S  
Sbjct: 31  EQIAGSVNTNPVVIRRLLGRMREAGLVCSRRGSDAGWRLLRPLESMTLRDVYEAIEPSPL 90

Query: 88  VAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                A    +CP+   CG+   +R    +A  A    L + +++ ++R+  +++    A
Sbjct: 91  FELHRAEPNPECPV--GCGIKPAMRTVYDRAEEAVRAELGRVTLDEVLRDVLAVRGPAGA 148


>gi|2226146|emb|CAA74438.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           ECF ++K  C +   CGL  VL +AL A+  VL +Y++  LV+N+  I K+ 
Sbjct: 2   ECFDANKNLCVISPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLL 53


>gi|87302927|ref|ZP_01085731.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
 gi|87282423|gb|EAQ74382.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
          Length = 144

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 1  MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M  + +T+YG+  L+  A         +  +IA    I E +L ++L  L ++G+V ++R
Sbjct: 1  MSFSTKTEYGLVALIELAEVYSGGGVLQAGEIARRQGIPERYLEQMLTSLRRSGLVHSLR 60

Query: 59 GRRGGVRLCRPADQITILDVV 79
          G RGG +L R  + IT+ +V+
Sbjct: 61 GPRGGYQLARSPELITVAEVL 81


>gi|251788573|ref|YP_003003294.1| BadM/Rrf2 family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537194|gb|ACT05815.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 148

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 9/124 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   A+ +  P R  +IA +   S + +  +L  L KAG+ ++  G 
Sbjct: 1   MPMSTRFVVAVHILTGFAVSDGKPMRSEEIAYSVNTSAVVIRGLLARLGKAGLTKSQLGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L + A  I++LDV +  E++      F+ H+   P   +C + S +   L+A   
Sbjct: 61  GGGTMLAKHAANISLLDVYETVEDTAL----FSLHR--TPPCENCAVGSNI---LDAIHP 111

Query: 121 VLTQ 124
           +LT+
Sbjct: 112 ILTR 115


>gi|118464782|ref|YP_880680.1| StaS protein [Mycobacterium avium 104]
 gi|118166069|gb|ABK66966.1| StaS protein [Mycobacterium avium 104]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RGR 
Sbjct: 1  MSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62 GGVRLCRPADQITILDVVK 80
          GG  L RP   I+I DV++
Sbjct: 61 GGYELARPGKDISIADVLR 79


>gi|300697092|ref|YP_003747753.1| Rrf2 family transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
 gi|299073816|emb|CBJ53337.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
          CFBP2957]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +  E    +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88


>gi|56696894|ref|YP_167256.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Ruegeria pomeroyi DSS-3]
 gi|56678631|gb|AAV95297.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Ruegeria pomeroyi DSS-3]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +  I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALTDIALQPADKLVTLGDISERQDISLPYLEQLFVKLRRADLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  I +++++ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLARPASDIRVVEILAAVDETVNAMHKGAGASGASSGSRAQSLTNRLWEGLSAHV 120

Query: 120 DV-LTQYSIECLVRN 133
            V L Q  +  +V+N
Sbjct: 121 YVFLHQTRLSDVVKN 135


>gi|83749686|ref|ZP_00946666.1| Rrf2 family protein [Ralstonia solanacearum UW551]
 gi|207739012|ref|YP_002257405.1| cog1959, predicted transcriptional regulator protein [Ralstonia
          solanacearum IPO1609]
 gi|83723648|gb|EAP70846.1| Rrf2 family protein [Ralstonia solanacearum UW551]
 gi|206592383|emb|CAQ59289.1| cog1959, predicted transcriptional regulator protein [Ralstonia
          solanacearum IPO1609]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1  MSTSSRFAVAVHILTLLA-SAEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GG  L RPAD+IT+LDV +  E    +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIA 88


>gi|311107146|ref|YP_003979999.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
 gi|310761835|gb|ADP17284.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C +T  L   
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117

Query: 115 LN-AFFDVLTQYSIECLV 131
           LN    D L   S++ LV
Sbjct: 118 LNRKMVDYLDSVSLQDLV 135


>gi|29654658|ref|NP_820350.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 493]
 gi|154705843|ref|YP_001424796.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
 gi|161829979|ref|YP_001597203.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
 gi|29541926|gb|AAO90864.1| rrf2 family protein [Coxiella burnetii RSA 493]
 gi|154355129|gb|ABS76591.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
 gi|161761846|gb|ABX77488.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
          Length = 153

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG 
Sbjct: 2   LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L R    I+I D++ A +    + EC +     C     CG+    +      FD
Sbjct: 62  NGGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120

Query: 121 VLTQYSI 127
           VL   ++
Sbjct: 121 VLDSLNL 127


>gi|56419543|ref|YP_146861.1| hypothetical protein GK1008 [Geobacillus kaustophilus HTA426]
 gi|56379385|dbj|BAD75293.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 7   TDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +D+ I V  + Y A   +       IA++  +    L KIL  L K  I+ +  G +GG 
Sbjct: 3   SDFSIAVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGF 62

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
            L  P + IT+  + K T E   V +C  S++ +CP+
Sbjct: 63  SLNDPPEHITLDKIFKITSEETLVPKCPDSNE-NCPI 98


>gi|269958756|ref|YP_003328543.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
 gi|269848585|gb|ACZ49229.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
          Length = 520

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ +  
Sbjct: 29  PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +   +  C +      P  G       +R   +  +D + +Y +  L    +SI  +FN
Sbjct: 89  DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIEKYVMHYL--KNTSILDVFN 138


>gi|295402097|ref|ZP_06812057.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109802|ref|YP_003988118.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294975879|gb|EFG51497.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214903|gb|ADP73507.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA++  +    L KIL  L K  I+ +  G +GG  L  P + IT+  + K T E   V 
Sbjct: 28  IAQSVSVHPARLRKILSILRKENIITSKEGAKGGFTLNDPPEHITLDKIFKITSEETLVP 87

Query: 90  ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
           +C  S++ +CP+  +    L  V   A   F + L   +I+ ++
Sbjct: 88  KCPDSNE-NCPIGRNLSNILIRVCHNAEQHFLNYLKGVTIKDII 130


>gi|325519582|gb|EGC98940.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          TJI49]
          Length = 49

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
          M LT  TDY +RV++Y A+H +    I +I++A  IS+  L K++Q L
Sbjct: 1  MRLTDYTDYSLRVMLYLAVHGEGLATIQEISDAYGISKNHLMKVVQRL 48


>gi|212212264|ref|YP_002303200.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
 gi|212010674|gb|ACJ18055.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
          Length = 153

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG 
Sbjct: 2   LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L R    I+I D++ A +    + EC +     C     CG+    +      FD
Sbjct: 62  NGGYQLARAPQSISIADIIAAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFD 120

Query: 121 VLTQYSI 127
           VL   ++
Sbjct: 121 VLDSLNL 127


>gi|86609933|ref|YP_478695.1| transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558475|gb|ABD03432.1| transcriptional regulator, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y I+ L+  A + +     +  IA+   I   +L K+L  L +AG+V + RG
Sbjct: 1   MRLTTRATYSIKALLDLAMLGSGQMASVRAIAQRQGIPAPYLEKLLIELRQAGLVCSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
            +GG RL R   +I I  ++ A  ES              PLV S   T+V
Sbjct: 61  AQGGYRLARAPRRIPISAILAAVGESL------------DPLVESSDATAV 99


>gi|15615687|ref|NP_243991.1| hypothetical protein BH3125 [Bacillus halodurans C-125]
 gi|10175747|dbj|BAB06844.1| BH3125 [Bacillus halodurans C-125]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + +Y +R L+  A   +    + ++++   +   +L K+L  L     + + RG+
Sbjct: 1   MKVSSKGEYCLRALIILAKQPERRFTVHELSKHTLVPPPYLEKLLSQLRVLSYITSKRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG +L R A  I++ +V++  E       C + +    C L   C L  +     +   
Sbjct: 61  GGGYQLSRDARDISMGEVIRQLEGPLAPMSCVSVTSYQSCELEQGCLLKPLWGLVRDTVA 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +VL Q ++  L+ N+   +K+
Sbjct: 121 NVLDQTTLADLIENKLGQRKV 141


>gi|320450833|ref|YP_004202929.1| BadM/Rrf2 family transcriptional regulator [Thermus scotoductus
          SA-01]
 gi|320151002|gb|ADW22380.1| transcriptional regulator, BadM/Rrf2 family [Thermus scotoductus
          SA-01]
          Length = 139

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          ++IA        F+ K+L  L KAG+VE+  GR GGV L  P + IT+L V+++
Sbjct: 28 AEIAAKLKAPPAFMAKVLSKLAKAGLVESRMGRAGGVWLKAPPEGITLLKVMES 81


>gi|293606133|ref|ZP_06688498.1| iron-sulfur cluster assembly transcription factor IscR
           [Achromobacter piechaudii ATCC 43553]
 gi|292815588|gb|EFF74704.1| iron-sulfur cluster assembly transcription factor IscR
           [Achromobacter piechaudii ATCC 43553]
          Length = 180

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-----VGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C +T  L   
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117

Query: 115 LN-AFFDVLTQYSIECLV 131
           LN    D L   S++ LV
Sbjct: 118 LNRKMVDYLDSVSLQDLV 135


>gi|225386837|ref|ZP_03756601.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
           DSM 15981]
 gi|225047063|gb|EEG57309.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
           DSM 15981]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            ++AE  C +   + K++  L KAG V+T  G  GG    + ADQ+T LD +    E  F
Sbjct: 25  EELAENICTNPARVRKVMAKLKKAGFVKTKEGSEGGYLFDQDADQVT-LDQIAQALEIRF 83

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           V   + S   D   + + G+  +    ++  FD L +
Sbjct: 84  VDTAWKSGDTDMKCLVASGMAGL----MDEIFDDLNE 116


>gi|260574649|ref|ZP_05842652.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259023066|gb|EEW26359.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 153

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+  +D    +++I+    IS  +L ++   L +A +VE VRG
Sbjct: 1  MKLSTKGRYAMVALADLALARDDDLVSLAEISRRQDISLAYLEQLFVKLRRASLVEAVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL R  D I + ++++A EE+
Sbjct: 61 PGGGYRLARSPDAIRVSEILEAVEET 86


>gi|209550687|ref|YP_002282604.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536443|gb|ACI56378.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   S+E  V
Sbjct: 122 IAAILDNMSLEQFV 135


>gi|254460865|ref|ZP_05074281.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
          bacterium HTCC2083]
 gi|206677454|gb|EDZ41941.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
          bacterium HTCC2083]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M    R    +  L + A   +     + IAE    + + + ++L  L +AG++ +V+G 
Sbjct: 1  MKRNSRLSLALHTLSHMAGDPERKRTSADIAEHAGTNPVVVRRVLGKLREAGLLASVKGH 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
           GG  L +PA+ IT+ DV  A +E   
Sbjct: 61 AGGWSLAKPANSITLADVYIALDERLV 87


>gi|242372556|ref|ZP_04818130.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242349773|gb|EES41374.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 142

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I  +     + IA +   + + + +++  L +AG +ET +G 
Sbjct: 1   MKISSRFTVAVHILSLVHIERNQTLTSAYIAGSVNTNSVVIRRLISKLKQAGFLETHQGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGS---CGLTSVLRKA 114
            GG++L +P   IT+LDV +A  E     E F  H+   I+C +VG+     L  VL +A
Sbjct: 61  -GGIQLLKPLTDITLLDVYRAV-EVVEEGELFQMHEDTNINC-VVGANIQSVLEIVLLRA 117

Query: 115 LNAFFDVLTQYSIECLV 131
            +A   VL   +++ +V
Sbjct: 118 QDAMETVLANVTMDDIV 134


>gi|256005574|ref|ZP_05430534.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|255990482|gb|EEU00604.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|316941505|gb|ADU75539.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A++++  +  ++ IAE   IS  +L ++   L K+G+V++ +G
Sbjct: 1   MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA----ECFASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L      I +  +++A E    V     E  + ++          +   + K+L
Sbjct: 61  AQGGYMLSEDPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
           N   D +T   +    R R+ I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142


>gi|187478009|ref|YP_786033.1| DNA-binding protein [Bordetella avium 197N]
 gi|115422595|emb|CAJ49120.1| putative DNA-binding protein [Bordetella avium 197N]
          Length = 177

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C +T  L   
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117

Query: 115 LN-AFFDVLTQYSIECLV 131
           LN    D L   S++ LV
Sbjct: 118 LNRKMVDYLDSVSLQDLV 135


>gi|330830081|ref|YP_004393033.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           veronii B565]
 gi|328805217|gb|AEB50416.1| Iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           veronii B565]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG  GG RL     +
Sbjct: 1   MLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRGPGGGYRLGLAPGE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++  V+ A +ES    +C    K  C     C   S+ R         L   ++  LVR
Sbjct: 61  ISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERISSFLGDITLAELVR 118

Query: 133 NRSSIKKI 140
            ++ +++I
Sbjct: 119 -QADVRRI 125


>gi|329904110|ref|ZP_08273676.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327548132|gb|EGF32848.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 147

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 38/68 (55%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  +S I++   IS  +L ++   L +  IVE+VRG  GG  L R A+ +T+ D++ A +
Sbjct: 15 PVTLSGISQRQEISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAEDVTVADIIIAVD 74

Query: 84 ESFFVAEC 91
          E     +C
Sbjct: 75 EPLDSTQC 82


>gi|255004297|ref|ZP_05279098.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Virginia]
          Length = 506

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ +  
Sbjct: 16  PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 75

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +   +  C +      P  G       +R   +  +D + +Y +  L    +SI  +FN
Sbjct: 76  DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 125


>gi|260881170|ref|ZP_05403779.2| Rrf2 family protein [Mitsuokella multacida DSM 20544]
 gi|260849700|gb|EEX69707.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +A +  ++ + + K +  L KAG+++  RG  GG+++ RP D+IT+ DV +A E
Sbjct: 38 LAGSVNVNPVIIRKTMSQLQKAGLIKVARGT-GGIKITRPLDEITLFDVFQAVE 90


>gi|254489600|ref|ZP_05102802.1| DNA-binding protein [Roseobacter sp. GAI101]
 gi|214041770|gb|EEB82411.1| DNA-binding protein [Roseobacter sp. GAI101]
          Length = 149

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          D P    ++A++   +     + +  L  AG V++ RG  GG  L RP  +IT+LD+  A
Sbjct: 21 DEPVTSDRLAKSMGTNPAVFRRTMAGLRNAGYVQSGRGHGGGWSLVRPLSEITLLDIYTA 80

Query: 82 TEESFFVAECFASHKIDC 99
            +    A    S+  DC
Sbjct: 81 LGQPALFAIGMRSNNTDC 98


>gi|119945067|ref|YP_942747.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
           ingrahamii 37]
 gi|119863671|gb|ABM03148.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
           ingrahamii 37]
          Length = 158

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI  +  P  ++ I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKAL 115
             GG +L +   QI++  ++ A  ES  V +C    K  C   G    +  L + L   +
Sbjct: 61  PGGGYKLGKERHQISVAMIIDAVNESVDVRKCGG--KGGCAEDGVQCLTHSLWAQLSDRI 118

Query: 116 NAFFDVLT 123
           + F D +T
Sbjct: 119 STFLDNIT 126


>gi|33592860|ref|NP_880504.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33596642|ref|NP_884285.1| putative DNA-binding protein [Bordetella parapertussis 12822]
 gi|33601258|ref|NP_888818.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33572508|emb|CAE42084.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33573343|emb|CAE37327.1| putative DNA-binding protein [Bordetella parapertussis]
 gi|33575693|emb|CAE32771.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|332382273|gb|AEE67120.1| putative DNA-binding protein [Bordetella pertussis CS]
          Length = 170

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C +T  L   
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWTT 117

Query: 115 LN-AFFDVLTQYSIECLV 131
           LN    D L   S++ LV
Sbjct: 118 LNRKMVDYLDSVSLQDLV 135


>gi|317405206|gb|EFV85545.1| DNA-binding protein [Achromobacter xylosoxidans C54]
          Length = 180

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C +T  L   
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSCGG--KRDCTSGNDGKPGKC-MTHELWAT 117

Query: 115 LN-AFFDVLTQYSIECLV 131
           LN    D L   S++ LV
Sbjct: 118 LNRKMVDYLDSVSLQDLV 135


>gi|302532311|ref|ZP_07284653.1| rrf2 family protein [Streptomyces sp. C]
 gi|302441206|gb|EFL13022.1| rrf2 family protein [Streptomyces sp. C]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + + L  L  AG+VE+ RG+  G RL R  + IT+ DV  A E    +
Sbjct: 33  QIAASVNTNPVVIRRTLGSLRDAGLVESRRGQGAGWRLARTPESITLRDVHLAVEPEPLI 92

Query: 89  AECFASHKIDCPLVGSCGLTSVLRK 113
               +     CP+  + G+ +VLR+
Sbjct: 93  PLHSSPPNRKCPV--AQGIPAVLRE 115


>gi|172062519|ref|YP_001810170.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
          ambifaria MC40-6]
 gi|171995036|gb|ACB65954.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          ambifaria MC40-6]
          Length = 146

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  IH D    P     IA   C + + + ++L  L  +G V++ +G  G
Sbjct: 2  RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L    D IT+LDV +A  E    ++  +    +C
Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98


>gi|149914909|ref|ZP_01903438.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseobacter sp. AzwK-3b]
 gi|149811097|gb|EDM70934.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseobacter sp. AzwK-3b]
          Length = 153

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L+  A+ + +    +S+I+    +S  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALVDIALQDGESLVTLSEISRRQDVSLPYLEQLFVKLRRANLVTSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL R A +I ++DV+ A +E+
Sbjct: 61 PGGGYRLARSASEIRVVDVLAAVDET 86


>gi|323141801|ref|ZP_08076668.1| putative HTH-type transcriptional regulator CymR
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413724|gb|EFY04576.1| putative HTH-type transcriptional regulator CymR
           [Phascolarctobacterium sp. YIT 12067]
          Length = 145

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H  D    +  IA    IS+ +L +I+  L K+  ++  RG
Sbjct: 1   MKISTKGRYALRMMLDLAEHQQDGFVALKDIAARQNISKKYLEQIVPILNKSNFLQANRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL     + T+  +++ TE +     C   + + C     C +T  L + LN   
Sbjct: 61  FQGGYRLVNAPREYTVGSILRLTEGNLTPVACLDFNPVGCERRNEC-ITLPLWQGLNKVI 119

Query: 120 -DVLTQYSIECLVRN 133
            D L   +++ ++ N
Sbjct: 120 ADYLDNITLQDILDN 134


>gi|117926693|ref|YP_867310.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp.
          MC-1]
 gi|117610449|gb|ABK45904.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
          MC-1]
          Length = 153

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +  +K+  Y I  ++  A ++   P +I ++     + + +L +++Q LVKAGI++ +RG
Sbjct: 2  LKFSKKLLYAIEAVVDIAYNSGGEPVQIREVTSRQGVPQRYLEQVMQRLVKAGILKGIRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
           +GG  L +   +I++ D+ +   E
Sbjct: 62 PKGGYLLAKERSKISVGDIARVAME 86


>gi|291562421|emb|CBL41237.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SS3/4]
          Length = 147

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 50/113 (44%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +  IA    +S+ +L +I+  L K G++ T RG +GG +L +   + T+  +++ TE S 
Sbjct: 16  LKDIAARQGLSKKYLEQIVPLLNKTGMLSTTRGYQGGYKLAKSPSECTVGAILQTTEGSL 75

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
               C       C    +C    V         D L   +I+ ++  +  +++
Sbjct: 76  APVSCLEHTPNPCERCSACDTLPVWEGLNRVIMDYLDGITIQTILDQKHELEE 128


>gi|222475186|ref|YP_002563602.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Florida]
 gi|222419323|gb|ACM49346.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Florida]
          Length = 520

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ +  
Sbjct: 29  PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +   +  C +      P  G       +R   +  +D + +Y +  L    +SI  +FN
Sbjct: 89  DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 138


>gi|254995024|ref|ZP_05277214.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Mississippi]
          Length = 520

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ +  
Sbjct: 29  PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +   +  C +      P  G       +R   +  +D + +Y +  L    +SI  +FN
Sbjct: 89  DKVRMVRCGSERGGCLPFPG-------VRCNSHNLWDGIERYVMHYL--KNTSILDVFN 138


>gi|298246146|ref|ZP_06969952.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553627|gb|EFH87492.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 174

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAG--IVETV 57
           + ++ + +YG+R+++  A H    P  ++ I++A  +   +L ++++ L  A   +V + 
Sbjct: 2   LRVSTKGEYGVRIMVDLARHYGGRPRSLTDISQAETLPLAYLEQLVKLLRDADPPLVSST 61

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCG---LTSVLR 112
           RG  GG RL R  ++I++ ++V+  E       C    ++   C  + SC    L + +R
Sbjct: 62  RGAHGGYRLNRDPNEISMGEIVRVLEGPISPMICATEGEMSQICGFIDSCKTKYLWARVR 121

Query: 113 KALNAFFDVLT 123
            A+    D +T
Sbjct: 122 DAVAQTLDSIT 132


>gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037361|gb|ABF63973.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L+ +  Y +  L   A+    P+     ++ I++   IS  +L ++   L + G+V +
Sbjct: 1  MKLSTKGRYAMVALADIALQ---PSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVAS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEES 85
          VRG  GG RL RPA +I +++++ A +E+
Sbjct: 58 VRGPGGGYRLARPASEIRVVEILAAVDET 86


>gi|152971498|ref|YP_001336607.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|169303064|ref|YP_001693239.1| transcriptional regulator [Escherichia coli]
 gi|262043875|ref|ZP_06016963.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013154|ref|ZP_08307575.1| transcriptional regulator [Klebsiella sp. MS 92-3]
 gi|150956347|gb|ABR78377.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|167614014|gb|ABZ89637.1| transcriptional regulator [Escherichia coli]
 gi|259038729|gb|EEW39912.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533580|gb|EGF60298.1| transcriptional regulator [Klebsiella sp. MS 92-3]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           F+ K++ PL + GI+ +  GR G + L RPAD+IT+ D+  +  E     + +AS + D 
Sbjct: 41  FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYLSVIED---KKLWAS-RPDV 96

Query: 100 PL-----VGSCG-LTSVLRKALNAFFDVLTQYSI 127
           P        +C    SV  +A  A  +VL ++++
Sbjct: 97  PARCVVSANACWYFKSVADEAEQASLNVLARHTV 130


>gi|239947324|ref|ZP_04699077.1| iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921600|gb|EER21624.1| iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 107

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 19 IHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
          + N   NR   +++I+    IS  +L +I   L KA +V+ +RG +GG  L    ++I I
Sbjct: 4  LQNQVLNRSLCLNKISVKQNISLNYLEQIFSKLKKADLVKAIRGLKGGYILIGNLEEIKI 63

Query: 76 LDVVKATEESFFVAECF 92
           D++ A  E+F +  C+
Sbjct: 64 SDIMDAVNENFIMTTCY 80


>gi|187777108|ref|ZP_02993581.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
           15579]
 gi|187774036|gb|EDU37838.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
           15579]
          Length = 125

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + +++  L +AG+V  + G  GG  L +  DQIT+LDV +A  +     
Sbjct: 12  IAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT-GGAYLLKDLDQITLLDVYRAV-DVVKEG 69

Query: 90  ECFASH---KIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN-RSSIKK 139
           E F  H    I+CP+  +    +  VL  A  A   VL   ++E +V   R  IKK
Sbjct: 70  ELFQFHDSPNINCPIGANIQSVMEGVLLNAQEAMEQVLENVTMEYIVTGIRKKIKK 125


>gi|323489199|ref|ZP_08094431.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
           donghaensis MPA1U2]
 gi|323397086|gb|EGA89900.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
           donghaensis MPA1U2]
          Length = 160

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
           I++    S  +  K+L+ LV AG++ +V G +GG +L +  + I + D+  A E  +S +
Sbjct: 31  ISQQLGTSPTYFQKLLRKLVSAGLITSVPGVKGGFKLNKKPEDINVFDIYVAIEGQQSLY 90

Query: 88  VAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                 S  ++       C LT ++ +A +A+   + Q +IE L R 
Sbjct: 91  SPSGVLSDLLELEEPERCCLLTELMVEAESAWRSRMEQETIESLSRK 137


>gi|56416821|ref|YP_153895.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
 gi|56388053|gb|AAV86640.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
          Length = 520

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ +  
Sbjct: 29  PKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSVG 88

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +   +  C    +   P  G       +R   +  +D + +Y +  L    +SI  +FN
Sbjct: 89  DKVRMVRCGNEREGCLPFPG-------VRCNSHNLWDGIEKYVMHYL--KNTSILDVFN 138


>gi|317484710|ref|ZP_07943611.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
 gi|316924066|gb|EFV45251.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
          Length = 168

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  + RT YG+R L+  A     P     ++++IA    +S  +L +I++ L  AGI+ +
Sbjct: 1   MRYSTRTRYGLRFLINLA---GRPAGACVQLAEIAREEGVSVKYLEQIVRVLRPAGILRS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
            RG +GG  L +  D I + +V +  E      EC    K  C   G C
Sbjct: 58  ARGAKGGYALAKSPDAIRMDEVFERLEGHISPVECLHGAK-SCEREGVC 105


>gi|227823095|ref|YP_002827067.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
 gi|227342096|gb|ACP26314.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ L+  A +       +++IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2  LTKKGKYGLKALVDLASLGPGETAFVTEIATRNNIPKKFLDTILLELRNTGILRSKKGPN 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
          GG  L +PA +I I  V++A +       C
Sbjct: 62 GGYSLSKPASEIMIGQVIRALDGPLAPIRC 91


>gi|238896072|ref|YP_002920808.1| putative transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548390|dbj|BAH64741.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 173

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           F+ K++ PL + GI+ +  GR G + L RPAD+IT+ D+  +  E     + +AS + D 
Sbjct: 55  FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYLSVIED---KKLWAS-RPDV 110

Query: 100 PL-----VGSCG-LTSVLRKALNAFFDVLTQYSI 127
           P        +C    SV  +A  A  +VL ++++
Sbjct: 111 PARCVVSANACWYFKSVADEAEQASLNVLARHTV 144


>gi|220904116|ref|YP_002479428.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868415|gb|ACL48750.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 181

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P   S++A    ISE F+ KI++ L   GI+++VRG  GG  L R  + IT+ D++ A E
Sbjct: 25 PASASELAACTGISEKFVQKIMRLLQAEGIIKSVRGIAGGHMLARNPEAITLADIICAVE 84


>gi|294054230|ref|YP_003547888.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
          akajimensis DSM 45221]
 gi|293613563|gb|ADE53718.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
          akajimensis DSM 45221]
          Length = 137

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 1  MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+ + +Y  RVL     +   D    I  +A+A  I   +L +IL  L  AG++ + R
Sbjct: 1  MKLSHKLEYACRVLAQLGRSYGQDKLAHIDTLADAEKIPANYLVQILNELRTAGLITSKR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
          G++GG  L R   +I +  +V+A +     AE    H
Sbjct: 61 GKQGGYALSREPSKIQLSAIVQAVD-----AELLEQH 92


>gi|82701827|ref|YP_411393.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82409892|gb|ABB74001.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 172

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  A+     P  +++I++   IS  +L ++   L   G+V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDLALQRQTRPVTLAEISQRQQISLSYLEQLFAKLRSRGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF- 118
             GG  L +   Q+++ +++ A +E     +C  + K +C     C +T  L   LN   
Sbjct: 61  PGGGYCLAKDMGQVSVAEIILAVDEPIDSTQC--NGKENCHNDRKC-MTHDLWTKLNELI 117

Query: 119 FDVLTQYSIECLV 131
           FD L   +++ LV
Sbjct: 118 FDHLGAVTLKQLV 130


>gi|28377816|ref|NP_784708.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254556000|ref|YP_003062417.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300767801|ref|ZP_07077711.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308179992|ref|YP_003924120.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270649|emb|CAD63555.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254044927|gb|ACT61720.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300494786|gb|EFK29944.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045483|gb|ADN98026.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 174

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +    VL+  A    + P     + E    S  ++ KI++ LV AG+V +  G
Sbjct: 1   MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG---LTSVLRK 113
             GGV L R  + I+I DVV A E   ++F     F     D   V   G   +  +  +
Sbjct: 61  NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A   + D L Q  +  L++
Sbjct: 121 ADQLWLDFLDQQKLATLIK 139


>gi|254249066|ref|ZP_04942386.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
 gi|124875567|gb|EAY65557.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
          Length = 146

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  IH D    P     IA   C + + + ++L  L   G V++ +G  G
Sbjct: 2   RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +   
Sbjct: 62  GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLA 121

Query: 121 VLTQYSIECLVRN 133
              + ++  L R+
Sbjct: 122 RFGEVTLGMLSRD 134


>gi|296117471|ref|ZP_06836058.1| transcriptional regulator, BadM/Rrf2 family protein
          [Gluconacetobacter hansenii ATCC 23769]
 gi|295975992|gb|EFG82783.1| transcriptional regulator, BadM/Rrf2 family protein
          [Gluconacetobacter hansenii ATCC 23769]
          Length = 140

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 11 IRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          I +++  A H      +S   IA+   ++   +  +LQ L ++G++E++RG RGG RL R
Sbjct: 4  ILIMLDVAFHAGRNGTVSAADIADRANLARRGIEPLLQTLSRSGLLESIRGPRGGYRLGR 63

Query: 69 PADQI---TILDVVKATEES 85
          P   I    IL+VV A E +
Sbjct: 64 PRRDILLSDILEVVTADEST 83


>gi|256839901|ref|ZP_05545410.1| predicted protein [Parabacteroides sp. D13]
 gi|256738831|gb|EEU52156.1| predicted protein [Parabacteroides sp. D13]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 3   LTKRTDYGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VR 58
           L+  T YG+   R L++   HN+      +IAE   I+   L   L+ LV AGI+ +   
Sbjct: 2   LSNPTRYGLIACRYLVW-GWHNNVWLNAPEIAERYRINVRALSPALRRLVMAGILRSQCG 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKAL 115
           G R G  L R  +++T+L+VV+A E +F +  C       +  C    SC +  V R  L
Sbjct: 61  GTRPGFMLSRAPEEVTMLEVVRALEGNFRMDCCRTVLPCVQCSCE-TDSCRVCGVFRDML 119

Query: 116 NAFFDVLTQYSIE 128
           +     L+  S+E
Sbjct: 120 DELRSRLSSVSLE 132


>gi|163752875|ref|ZP_02159999.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
           algicida OT-1]
 gi|161326607|gb|EDP97932.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
           algicida OT-1]
          Length = 137

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P  IS+IA    IS+ FL  IL  L   G++ + +G+ 
Sbjct: 2   LSKKTKYGLKALTYIARKGDEAPVLISEIATEEKISKKFLEAILLQLKNNGLLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  D+I I  +++  E    +  C    F     DCP    CGL  ++ +  + 
Sbjct: 62  GGYYLIKTPDEIKIASLIRILEGPIAMLPCVSLNFYEKCDDCPDETKCGLHQLMLEVRDN 121

Query: 118 FFDVLTQYSIECLV 131
              VL   ++E L 
Sbjct: 122 MLAVLDNKTLEDLT 135


>gi|116691671|ref|YP_837204.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|116649671|gb|ABK10311.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  IH D    P     IA   C + + + ++L  L   G V++ +G  G
Sbjct: 15  RTDSRLSRMLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGG 74

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +   
Sbjct: 75  GWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLA 134

Query: 121 VLTQYSIECLVRN 133
              + ++  L R+
Sbjct: 135 RFGEVTLGMLSRD 147


>gi|288933998|ref|YP_003438057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Klebsiella variicola At-22]
 gi|290510944|ref|ZP_06550313.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|288888727|gb|ADC57045.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
          At-22]
 gi|289775937|gb|EFD83936.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPAD+IT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDI 79


>gi|226941780|ref|YP_002796854.1| transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226716707|gb|ACO75845.1| Predicted transcriptional regulator [Laribacter hongkongensis
          HLHK9]
          Length = 159

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L +A +VE++RG
Sbjct: 1  MRLTTKGRFAVTAMLDLALRQHKGPVTLAGISERQDISLSYLEQLFGKLRRAELVESIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R    IT+ D++ A +E     +C
Sbjct: 61 PGGGYCLARQPAAITVADIIIAVDEPLDATQC 92


>gi|254509696|ref|ZP_05121763.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533407|gb|EEE36395.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
          Length = 152

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 12/140 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+ + D    + +I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQSSDALVTLGEISERQDISLPYLEQLFVKLRRADLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-----LTSVLRKA 114
             GG RL R   +I +++++ A +E+       A HK       S G     LT+ L ++
Sbjct: 61  PGGGYRLARAPSEIRVVEILAAVDET-----VDAMHKGAGATGASSGSRAQSLTNRLWES 115

Query: 115 LNA-FFDVLTQYSIECLVRN 133
           L+A  +  L Q  +  ++RN
Sbjct: 116 LSANVYVFLHQTRLSDVIRN 135


>gi|83645081|ref|YP_433516.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633124|gb|ABC29091.1| predicted transcriptional regulator [Hahella chejuensis KCTC
          2396]
          Length = 135

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH   +D P    QIAE    + + + + +  L   G V++ +G  G
Sbjct: 2  RKDSRLSRVLHVLIHLAASDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQGYVDSAKGHSG 61

Query: 63 GVRLCRPADQITILDVVKA 81
          G  L +P ++IT+LDV  A
Sbjct: 62 GWTLIKPLNEITLLDVHNA 80


>gi|241767055|ref|ZP_04764836.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax
          delafieldii 2AN]
 gi|241362402|gb|EER58363.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax
          delafieldii 2AN]
          Length = 142

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T R    +  +   A+  +  P  +S I+     S   L ++   L KAG+V++ RG
Sbjct: 1  MRITTRGQLAVSAMTDLAMRQHKGPVALSTISARQGTSLSHLEQLFSALKKAGLVDSTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L R  +Q+++ D+V A E      E 
Sbjct: 61 PGGGYALARKPEQVSVADIVVAVENQRVAEEA 92


>gi|206577940|ref|YP_002237025.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
 gi|206566998|gb|ACI08774.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
          Length = 159

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 27/39 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPAD+IT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDI 79


>gi|188533841|ref|YP_001907638.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
 gi|188028883|emb|CAO96745.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
          Length = 144

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G +RL RPA QIT+ D+
Sbjct: 32 FVRKMMVPLTRDGIIVSTLGRSGSIRLGRPAQQITLCDI 70


>gi|88799892|ref|ZP_01115464.1| predicted transcriptional regulator [Reinekea sp. MED297]
 gi|88777323|gb|EAR08526.1| predicted transcriptional regulator [Reinekea sp. MED297]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  ++ I+    IS  +L ++   L K G+V +VRG  GG RL      I++  VV A  
Sbjct: 12  PINLADISHRQGISLSYLEQLFSKLRKQGLVSSVRGPGGGYRLGDERSAISVAAVVDAVS 71

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AFFDVLTQYSIECLVRNRSSIKKIFN 142
           ES    +C    K  C   G   LT  L + L+    D L   S++ LV +RS I+ + +
Sbjct: 72  ESMDATKCQG--KSGCQ-GGEICLTHHLWQDLSEQIHDFLEDISLQDLV-DRSEIRSVND 127


>gi|184199973|ref|YP_001854180.1| Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183580203|dbj|BAG28674.1| putative Rrf2 family DNA-binding protein [Kocuria rhizophila
           DC2201]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT  +D  +RVL+   +    P        +IAE        + K +  L   G++ +
Sbjct: 1   MRLTAFSDIALRVLL---LMGGLPQGTMLSTQRIAEGVGAPYHHVAKTVARLRGMGLLCS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RGR GGV L      +++  V++  E    + EC A     CPL   C L   L  A  
Sbjct: 58  QRGRAGGVALTAEGCGVSVGRVLRELEADTAIVECEADEAA-CPLNHGCRLRRALNSARE 116

Query: 117 AFFDVLTQYSIECLVRNR 134
           AF+  L   ++  LV  R
Sbjct: 117 AFYRELDGVTVTDLVNPR 134


>gi|182679823|ref|YP_001833969.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635706|gb|ACB96480.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R    +  +   A+H    P     +A    +    L  +LQ LV+A I++ VRG R
Sbjct: 4   LSRRNLLALAAVTDIALHARPLPVAAKALASRLQLPPRHLETLLQALVRANILKGVRGPR 63

Query: 62  GGVRLCRPADQITILDVVKA-----TEESFFVAECFASHKIDCPLVGSCG 106
           GG  L R   +IT  D+++A       E+  +  C     +  PLV   G
Sbjct: 64  GGYELARERRRITAADILRAILNEQDSENGLIQPCGLVEHVVGPLVEEAG 113


>gi|260063768|ref|YP_003196848.1| BadM/Rrf2 family transcriptional regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783213|gb|EAR14386.1| transcriptional regulator, BadM/Rrf2 family protein [Robiginitalea
           biformata HTCC2501]
          Length = 135

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 5/114 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P +I++IA    IS+ FL  IL  L K G + + +G+ 
Sbjct: 2   LSKKTKYGLKALTYLAAQKDREPVQIAEIARHENISQKFLESILLTLRKNGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVL 111
           GG  L +   +I +  V++  E    +  C    F     DCP   +C +  ++
Sbjct: 62  GGYYLIKDPGEIRMTSVMRVLEGPIAMVPCVSLNFYEPCDDCPDESACSVHKLM 115


>gi|300716621|ref|YP_003741424.1| transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
 gi|299062457|emb|CAX59574.1| Transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
          Length = 160

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G +RL RPAD+IT+ D+
Sbjct: 41 FVRKMMVPLTRDGIIVSTLGRAGTIRLGRPADEITLCDI 79


>gi|126737794|ref|ZP_01753524.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseobacter sp. SK209-2-6]
 gi|126721187|gb|EBA17891.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseobacter sp. SK209-2-6]
          Length = 153

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  I++   IS  +L ++   L +A +V +VRG  GG RL RPA +I ++D++ A +E+
Sbjct: 28 LGDISKRQDISLPYLEQLFVKLRRAELVTSVRGPGGGYRLARPASEIRVVDILSAVDET 86


>gi|221369698|ref|YP_002520794.1| hypothetical protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
 gi|221162750|gb|ACM03721.1| Hypothetical Protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
          Length = 142

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  L++  +H    D P    QIA     + + + +I+  L   G V+  RG  G
Sbjct: 2  RQDTRLSRLLHVLLHMAQTDAPMTSQQIAGMLGSNPVVVRRIMAGLRDGGYVDAERGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G R+ R   +IT+LDV ++       A  F++ +  C
Sbjct: 62 GWRIIRRTTEITVLDVYRSLGSPDLFAFGFSNPRPSC 98


>gi|117164516|emb|CAJ88062.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L KAG+VE+ RG   G  L R  + +T+LDV +A E     
Sbjct: 32  QIATSANTNPVVIRRLLGELRKAGLVESRRGVGAGWSLARELESMTLLDVYEAVEPGPLF 91

Query: 89  A--------ECFASHKIDCPLVGSC--GLTSVLRKAL------NAFFDVL 122
           A        EC   H I  P + +   G+   LR  L      N   DVL
Sbjct: 92  AMHRTTPDQECVVGHGIQ-PAMQNIYEGIEKTLRDELARVTLANVLRDVL 140


>gi|257457624|ref|ZP_05622791.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
 gi|257445010|gb|EEV20086.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
          Length = 141

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IAE+  ++ + + KIL  L KAG+VET  G  GG  L +  ++I +L + KA  E     
Sbjct: 31  IAESTGVNAVIIRKILLQLQKAGLVETAAG-VGGSHLVKKPEEINLLSIYKAVNEDNVHR 89

Query: 90  ECFASH---KIDCPL 101
             F+ H      CPL
Sbjct: 90  TVFSFHPSPNSQCPL 104


>gi|218674482|ref|ZP_03524151.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 156

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 17  CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           CAI    P         +AE   + + +L K LQ L +A +VET  G  GG RL R   +
Sbjct: 8   CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLARAPSE 67

Query: 73  ITILDVVKATEESFFVAECFASHKID-CPLVG-----SCGLTSVLRKALNAFFDVLTQYS 126
           +  L++V+A E       C    + + C   G      C +  ++ +A  A+ D L +  
Sbjct: 68  VNFLEIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWRDTLRRVR 127

Query: 127 IECLV 131
           +  LV
Sbjct: 128 LSDLV 132


>gi|239636705|ref|ZP_04677707.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          warneri L37603]
 gi|239598060|gb|EEQ80555.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          warneri L37603]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++K  + GI VL+  A   +     SQ ++E   +S+  L KIL+ LV A ++ +   
Sbjct: 1  MKISKHFEQGIYVLLILATQENQGAVKSQTLSEKLEVSDSSLKKILRKLVVANLITSNAS 60

Query: 60 RRGGVRLCRPADQITILDVVKA 81
          + GG +L +  + IT+ DV++A
Sbjct: 61 KDGGFQLNQSIEDITLKDVIEA 82


>gi|317132533|ref|YP_004091847.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
 gi|315470512|gb|ADU27116.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
          Length = 137

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISE------LFLFKILQPLVKAGIV 54
           M +T+ +DY +RV+++      Y   I +  EA  ISE       FL K+L+ +  A IV
Sbjct: 1   MRVTQESDYALRVIIFL-----YQRGIGERVEARVISEKENIPLRFLLKLLRKMAAANIV 55

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRK 113
            + RG  GG  + +   +I++ +V++A E   +V +C   S + +     +C +   L+ 
Sbjct: 56  RSYRGSGGGYAIEKQPSEISVREVIEAVEGPIYVNKCLGDSSQCNLDRTSTCHIHRALQM 115

Query: 114 ALNAFFDVLTQYSIECLVR 132
             +     L + + E +++
Sbjct: 116 VQDKLLANLDELTFEQILK 134


>gi|259416991|ref|ZP_05740911.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
          TrichCH4B]
 gi|259348430|gb|EEW60207.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
          TrichCH4B]
          Length = 142

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 38/59 (64%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          ++ I++   IS  +L ++   L + G+V +VRG  GG RL RPA +I +++++ A +E+
Sbjct: 18 LADISKRQDISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARPASEIRVVEILAAVDET 76


>gi|254476371|ref|ZP_05089757.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030614|gb|EEB71449.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     S IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGRLREAGLLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R    I+  DV  A +E    ++  +    + P   +C +   L+K ++   +
Sbjct: 61  AGGWRLARSPQDISFADVYLALDERLVASDEIS----EAP---ACSVEHALQKRVSGVLE 113

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + Q  I+ L    +SI ++  A
Sbjct: 114 EIEQTLIQKL--GEASISEVRGA 134


>gi|114798072|ref|YP_758963.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
 gi|114738246|gb|ABI76371.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
          Length = 163

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL---DVVKATEESF 86
          +   +L K +Q L +AGIV + RG  GG RL R  ++I +L   D V   E +F
Sbjct: 37 VPPAYLAKHMQALARAGIVTSARGASGGYRLARAPEEINLLQIADAVDGGEPAF 90


>gi|319946559|ref|ZP_08020794.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
           700641]
 gi|319747305|gb|EFV99563.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
           700641]
          Length = 149

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  D     S  IA +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLVMIALKGDCTKVTSDMIAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
             GG  + +  + I++LD+ +A E      + F  H+   P
Sbjct: 61  -TGGAEMAKELEDISLLDIYQAVECLGKTGQLFGFHEHPNP 100


>gi|300113345|ref|YP_003759920.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299539282|gb|ADJ27599.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 158

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + ++K TDY I ++   A+     +  + ++    +    + KIL+ L +AG++ + RG 
Sbjct: 2   LRMSKMTDYAIVLMTRLAMDPKGQHAATDLSAQVEMPLPTVSKILKQLARAGLLVSSRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +  + I++ +++   E    + EC ++   +C     C   +   +   A + 
Sbjct: 62  QGGYSLGKSPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCATRAHWEQINQAVYG 120

Query: 121 VLTQYSIECLVR 132
            L +  +  +V+
Sbjct: 121 ALNEIKLSDMVQ 132


>gi|259503283|ref|ZP_05746185.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
 gi|259168738|gb|EEW53233.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
          Length = 154

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R    I +L +  I H   P     IA +   S + + +++  L K G++ETV G
Sbjct: 1  MRVSTRLSDSIHILAFLQIFHGKLPLTSENIAGSVRTSPVVIRRLMSALRKGGLIETVPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
               RL RPA +I++ D+  A E S
Sbjct: 61 -SADPRLARPASEISLYDIYLAVEGS 85


>gi|254455677|ref|ZP_05069106.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082679|gb|EDZ60105.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
          Length = 130

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  I+    IS  +L +I   L K  IV+++RG +GG  L +  ++I + ++  A +
Sbjct: 14  PVSLRDISLRQGISLDYLEQIFSKLKKDQIVKSIRGTQGGYVLSKKPNEIKLTNIFHAVD 73

Query: 84  ESFFVAECFASHKIDCPLVG----SCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           E     +C    K  C        +  L   L   +N+FFD   + S+E L++
Sbjct: 74  EKVKTVQCKKESKKGCNGKATKCVTHNLWDELENHINSFFD---KKSLEDLLK 123


>gi|332528839|ref|ZP_08404813.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
          ATCC 19624]
 gi|332041698|gb|EGI78050.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
          ATCC 19624]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ ++ + +  ++  A+     P  ++ I +   IS  +L ++   L +A +VE+ RG
Sbjct: 1  MRLSAKSRFAVAAMIDLALREAAGPVPLNSIGQRLQISLSYLEQLFSKLRRANLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R A ++++ D+++A E
Sbjct: 61 PGGGYTLGRSAQRVSVADIIRAVE 84


>gi|163857298|ref|YP_001631596.1| hypothetical protein Bpet2986 [Bordetella petrii DSM 12804]
 gi|163261026|emb|CAP43328.1| unnamed protein product [Bordetella petrii]
          Length = 148

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  +H    D P    +IA     +   + + +  L K G V++ +G  G
Sbjct: 2  RTDSRLSRMLHVLLHMARADQPMTSEEIARMLGTNAAVVRRTMAGLRKVGYVQSDKGHHG 61

Query: 63 GVRLCRPADQITILDVVKA 81
          G R+ R  D IT+LDV +A
Sbjct: 62 GWRMARGLDSITLLDVHRA 80


>gi|89054857|ref|YP_510308.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864406|gb|ABD55283.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  +   A+   D    +S +++   +S  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVAMADLALQTGDVLTPLSDLSKRQNVSLPYLEQLFVKLRRAELVVSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL RPA +I ++++ +A +E+
Sbjct: 61 PGGGYRLARPATEIRVVEIFEAVDET 86


>gi|317969579|ref|ZP_07970969.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
          CB0205]
          Length = 142

 Score = 42.0 bits (97), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M    +T YG+  L+  A       R  +S IA+   I E +L +++  L K G++ + R
Sbjct: 1  MPFNAKTRYGLLALIELAGIQAQGGRLQVSVIAQRQGIPERYLEQMMTSLRKGGLLNSSR 60

Query: 59 GRRGGVRLCRPADQITILDVVK 80
          G +GG +L RPA  I + + ++
Sbjct: 61 GPKGGYQLARPAADIRLSEALE 82


>gi|189183482|ref|YP_001937267.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180253|dbj|BAG40033.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT ++ Y +  VL   +  +  P ++ +IA+   I+  +L ++   L   GIV++V+G
Sbjct: 1  MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
            GG  L     + TI D++ A EE   +  C  S
Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRCNNS 95


>gi|149202631|ref|ZP_01879603.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius sp. TM1035]
 gi|149143913|gb|EDM31947.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius sp. TM1035]
          Length = 153

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          +  I+    IS  +L ++   L +A +V++VRG  GG RL RPA +I + D++ A +E+ 
Sbjct: 28 LGDISRRQDISLPYLEQLFVKLRRADLVKSVRGPGGGYRLMRPASEIRVTDILAAVDETI 87


>gi|154503942|ref|ZP_02041002.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC
          29149]
 gi|153795369|gb|EDN77789.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC
          29149]
          Length = 132

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  TK  DY IR++   A+ +     +S+I E   +     +KI + L K+G +++ RG 
Sbjct: 1  MLFTKECDYAIRIMR--ALSSGELISVSRICEMEHLPSAMTYKITRKLEKSGFLKSCRGT 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L     +I++ D+  A +    + EC 
Sbjct: 59 NGGYALNLKLAEISLYDLCAAIDPDILLLECM 90


>gi|222086332|ref|YP_002544865.1| hypothetical protein Arad_2848 [Agrobacterium radiobacter K84]
 gi|221723780|gb|ACM26936.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIASRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L R A +I I  V++  +       C +        DC     C +   + +  +A
Sbjct: 62  GGYSLSRLASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPERCHVRRSMTEVRDA 121

Query: 118 FFDVLTQYSIECLV 131
             D+L   ++E  V
Sbjct: 122 IADILDNMTLEQFV 135


>gi|312129033|ref|YP_003996373.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
           byssophila DSM 17132]
 gi|311905579|gb|ADQ16020.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
           byssophila DSM 17132]
          Length = 139

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K+  Y ++ L    ++ +   P  IS+I+E   I + FL  IL  L   GI+++ +G+
Sbjct: 2   ISKKAKYALKALTRLTLNYETRKPLLISEISETENIPKKFLEAILLELRNNGILQSQKGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALN 116
            GG  L  P  ++ I  +++  +       C + H      DC    +C +  ++++  +
Sbjct: 62  GGGYLLKLPPAEVKIARIIRVIDGPIAPLLCVSLHFYDKCEDCSSEEACKIRPLMQQIRD 121

Query: 117 AFFDVLTQYSIECLVRN 133
           A   V    +++ L  N
Sbjct: 122 ANLTVYENTTLQDLTYN 138


>gi|125974347|ref|YP_001038257.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|281418894|ref|ZP_06249912.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|125714572|gb|ABN53064.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|281407351|gb|EFB37611.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
          Length = 149

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A++++  +  ++ IAE   IS  +L ++   L K+G+V++ +G
Sbjct: 1   MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA----ECFASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L      I +  +++A E    V     E  + ++          +   + K+L
Sbjct: 61  AQGGYMLSEVPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
           N   D +T   +    R R+ I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142


>gi|148284617|ref|YP_001248707.1| iron-sulfur cluster assembly transcription regulation factor
          [Orientia tsutsugamushi str. Boryong]
 gi|146740056|emb|CAM80173.1| iron-sulfur cluster assembly transcription regulation factor
          [Orientia tsutsugamushi str. Boryong]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 1  MHLTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT ++ Y +  VL   +  +  P ++ +IA+   I+  +L ++   L   GIV++V+G
Sbjct: 1  MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
            GG  L     + TI D++ A EE   +  C  S
Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRCNNS 95


>gi|116253531|ref|YP_769369.1| Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258179|emb|CAK09280.1| putative Rrf2 family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 154

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   ++E  V +   I
Sbjct: 122 IAAILDNMTLEQFVADGGRI 141


>gi|255264484|ref|ZP_05343826.1| transcriptional regulator [Thalassiobium sp. R2A62]
 gi|255106819|gb|EET49493.1| transcriptional regulator [Thalassiobium sp. R2A62]
          Length = 143

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L + A   D     ++IA+    + + + ++L  L  AG++ + RG  GG RL R  
Sbjct: 11 LHALSHMAYDTDDAQTSAEIADHAGTNPVVVRRVLGKLRAAGLLTSERGHSGGWRLGRET 70

Query: 71 DQITILDVVKATEESFFVA 89
            IT+ DV  A  E+  V+
Sbjct: 71 KHITLADVYAALGENLVVS 89


>gi|254421032|ref|ZP_05034756.1| rrf2 family protein (putative transcriptional regulator)
           [Brevundimonas sp. BAL3]
 gi|196187209|gb|EDX82185.1| rrf2 family protein (putative transcriptional regulator)
           [Brevundimonas sp. BAL3]
          Length = 160

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +++IA    IS  +L ++   L K+ +V++VRG  GG RL + A +  + ++V A +E  
Sbjct: 33  LAEIAARQEISLSYLEQLFARLRKSDLVKSVRGPGGGYRLAKGAHETVVAEIVLAVDEPI 92

Query: 87  FVAECFA-SHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLVRNRSSIKK 139
               C A      C + G   +T  L + L +     L   S+E +V NR+  ++
Sbjct: 93  RATRCVAHGSPKGCMMAGERCITHDLWEDLGDEIHRYLAGVSLEDVVMNRTGQRR 147


>gi|268679955|ref|YP_003304386.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617986|gb|ACZ12351.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 137

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 3  LTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L+ +  YG+  +  ++ A  +  P +I +I+    I + +L ++L  L +AG+V +VRG 
Sbjct: 4  LSTKGMYGLSAMYQLFLA-KSSKPLQIKEISTRAEIPQNYLEQLLILLRQAGLVNSVRGA 62

Query: 61 RGGVRLCRPADQITILDVVKATEESFFV 88
           GG  L + A+ I I D++ A E +  V
Sbjct: 63 YGGYLLAKAAENILIKDILIALEGNLLV 90


>gi|319955408|ref|YP_004166675.1| transcriptional regulator, badm/rrf2 family [Cellulophaga
          algicola DSM 14237]
 gi|319424068|gb|ADV51177.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga
          algicola DSM 14237]
          Length = 143

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K  +YG+R +++ A  +D   ++S   I+E     + F  KILQ L K  IV +++G 
Sbjct: 2  FSKSCEYGLRAVLFIAQQSDKDTKVSMSTISEEINSPQAFTAKILQKLTKTQIVHSLKGP 61

Query: 61 RGGVRL------CRPADQITILD 77
           GG  +       + ++ +TILD
Sbjct: 62 YGGFSILPEKMDTKLSEIVTILD 84


>gi|222053320|ref|YP_002535682.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp.
          FRC-32]
 gi|221562609|gb|ACM18581.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp.
          FRC-32]
          Length = 146

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K +  G+  ++  A   +     + IAE   IS   L K+++ LV  G+V+ +RG 
Sbjct: 1  MKLNKASLLGLIAVLELADDPEQQLSTTDIAEKYDISTHHLAKVMRNLVHKGVVQAMRGV 60

Query: 61 RGGVRLCRPADQITILDVVK 80
           GG R     ++ T+LD+++
Sbjct: 61 GGGYRFAGNPNRTTLLDIIQ 80


>gi|15807194|ref|NP_295923.1| hypothetical protein DR_2201 [Deinococcus radiodurans R1]
 gi|6460004|gb|AAF11750.1|AE002053_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 155

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +I+++  I   +L +IL  L   GIV++ +G  GG  L R    I++ +VV+A +     
Sbjct: 30  EISDSTGIHRPYLVRILAALSAKGIVKSKKGIGGGYALARKPRLISLCEVVRAVDGPVAP 89

Query: 89  AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131
             C + +    C   G C    +V  +  +A   VL ++S+E LV
Sbjct: 90  LSCISLNWHEPCAEEGRCHARATVYTRMRDAMLGVLQEFSVEDLV 134


>gi|330685745|gb|EGG97380.1| transcriptional regulator, Rrf2 family [Staphylococcus
          epidermidis VCU121]
          Length = 158

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++K  + GI VL+  A         SQ ++E   +S+  L KIL+ LV A ++ +   
Sbjct: 1  MKISKHFEQGIYVLLILATQEGQGAVKSQTLSEKLEVSDSSLKKILRKLVVADLITSNAS 60

Query: 60 RRGGVRLCRPADQITILDVVKA 81
          + GG +L R  + IT+ DV++A
Sbjct: 61 KDGGFQLNRSIEDITLKDVIEA 82


>gi|257414160|ref|ZP_04745427.2| iron-sulfur cluster assembly transcription factor IscR [Roseburia
           intestinalis L1-82]
 gi|257201011|gb|EEU99295.1| iron-sulfur cluster assembly transcription factor IscR [Roseburia
           intestinalis L1-82]
          Length = 130

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  IA    IS+ +L +I+  L KA  V+++RG +GG  L +  ++ T+  +++ TE
Sbjct: 12  PISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRGAQGGYILTKRPEEYTVGMILRLTE 71

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRK---ALNAFFDVLT 123
            S     C       C  +  C    V +K   A+N   D +T
Sbjct: 72  GSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAINQVVDSIT 113


>gi|227507946|ref|ZP_03937995.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227192562|gb|EEI72629.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 159

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  + +L+  A+  D+ P R   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1   MKLKSSFEQAVCILLMLALSKDHMPLRSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L    +++T+LDV  A E                P++ S G+ S +      FF
Sbjct: 61  KGGGFSLSYDINRMTLLDVYNAIEGP-------------SPIIKSTGIASRI------FF 101

Query: 120 D 120
           D
Sbjct: 102 D 102


>gi|293396060|ref|ZP_06640341.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421558|gb|EFE94806.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 157

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L    +      R   IA +   +   + +IL  L  AG+  +  G+
Sbjct: 1   MSTSTRFAVAIHILTNITLFRGQAVRSEDIARSVNTNPTVVRRILGALADAGLTHSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKI 97
            GG  L +PA +IT+ D+  A E+  +          EC+  H I
Sbjct: 61  GGGALLAKPASEITLRDIYHAVEDQPYFPLHRSKPNDECYIGHAI 105


>gi|190892504|ref|YP_001979046.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190697783|gb|ACE91868.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 162

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +AE   + + +L K LQ L +A +V+T  G  GG RL R + +I  LD+V+A E
Sbjct: 31 LAELHGLPKEYLSKALQSLSQASLVDTTLGPSGGYRLARASCEINFLDIVEAVE 84


>gi|303238934|ref|ZP_07325465.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302593567|gb|EFL63284.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 149

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A+H    +  +  IAE   IS  +L ++   L K+G+V++V+G
Sbjct: 1   MKFSTKGRYGLRAMVDLAVHAKGEHVALCSIAERQGISMNYLEQVFSVLRKSGLVKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L      I +  +++  E    V +  A +  +    + SC    V  K   + 
Sbjct: 61  AQGGYILSESPADIKVGRILRVLEGPLSVIDEDAENSTENESRIQSCIRMCVWDKMNESL 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D+    ++E LV N   +  I
Sbjct: 121 NDLADSLTLEDLVDNYWKMNGI 142


>gi|222102654|ref|YP_002539693.1| hypothetical protein Avi_7313 [Agrobacterium vitis S4]
 gi|221739255|gb|ACM39988.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 172

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L ++++  I +L  CA           +A+    +    ++++  LV+ G + + RG 
Sbjct: 1   MRLKRQSEIAIGILTVCAKSPSTKYPAQHLAQEVGATRDHAYQVVALLVRNGFLNSDRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A  I + DV++ T+      +  A       L G   L  ++  A +    
Sbjct: 61  GGGLRLARDAKDIKLADVLRITQPEL---DGNAEEPEPGTLKGQPLLDGIVAAASSFLVS 117

Query: 121 VLTQYSIECLVRNRSS 136
           +L ++++  LV +  S
Sbjct: 118 LLDRFTVADLVASPDS 133


>gi|332297044|ref|YP_004438966.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
 gi|332180147|gb|AEE15835.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
          Length = 140

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE  C + + + K+L  L  A +VET  G  GG R    A  +T+ DV       F V 
Sbjct: 27  LAENICTNPVRIRKVLSKLAGAALVETKEGADGGYRFTGDAAHVTLADVAGILNVDFTVM 86

Query: 90  ECFASHKIDCPLVGSCGLTSVL 111
             + S  ID P + S G+ + +
Sbjct: 87  N-WRSGSIDKPCLISSGMAAAM 107


>gi|226227480|ref|YP_002761586.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090671|dbj|BAH39116.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 146

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 3  LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+   ++ +R ++  A H N        +A+       +L K L  L KAG+V + RG  
Sbjct: 2  LSATAEHAMRAVLLLARHGNATALSADAMADQLGAPRNYLAKTLNALAKAGVVHSARGAA 61

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF 92
          GG  L  P D +T+  ++   ++   V  C 
Sbjct: 62 GGFTLAVPPDVLTVQRIIAPFDDHSRVPACL 92


>gi|329922262|ref|ZP_08277964.1| transcriptional regulator [Paenibacillus sp. HGF5]
 gi|328942299|gb|EGG38569.1| transcriptional regulator [Paenibacillus sp. HGF5]
          Length = 147

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE V+  
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113
             G +L +P   IT+LD+  A     E S F      +    CP VG      +  V   
Sbjct: 60  VAGAKLAKPPSGITLLDIYHAVHVVQEGSLF--GIHENSDTKCP-VGKHIQTAIVPVFSA 116

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A  D L + ++E +VR
Sbjct: 117 AQKAMEDTLHEVNLEQIVR 135


>gi|89054747|ref|YP_510198.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864296|gb|ABD55173.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 136

 Score = 42.0 bits (97), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     + IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLGHMAGAPDKLRTSADIADHAGTNPVVVRRVLGRLREAGLLISEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R    IT+ DV  A +ES   +       ++   V SC +   L + +++   
Sbjct: 61  AGGWRLARAPQSITLADVYLALDESLVAS-------VESDDVPSCSVEHALHRRVSSVMK 113

Query: 121 VLTQYSIECL 130
            + Q  IE L
Sbjct: 114 DIEQSLIERL 123


>gi|238062427|ref|ZP_04607136.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237884238|gb|EEP73066.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 141

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           ++A +   + + + + L  L +AG+V   RG   G  L RPA +IT+LDV  A      +
Sbjct: 32  EVAASVNTNAVIVRRSLGDLQRAGLVRARRGNGAGFSLGRPATEITLLDVWLAVSPEPLL 91

Query: 89  AECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127
           A   +   ++C  VG      LT +  +A N F   L ++++
Sbjct: 92  ALHHSEPNLECQ-VGRGIRPVLTDLYDEATNTFRAALARWTV 132


>gi|256827446|ref|YP_003151405.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium
          curtum DSM 15641]
 gi|256583589|gb|ACU94723.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium
          curtum DSM 15641]
          Length = 167

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  +   ++ +  LMY   +  +    I  +AE   IS  +L K    L KA IV +  G
Sbjct: 1  MKFSISIEHALHCLMYMVDVEENKSIGIRDLAEFQGISASYLSKTFTRLAKAHIVLSSPG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFF 87
           +GG RL R  + I+  D+V+A E  + FF
Sbjct: 61 VKGGYRLARTPEAISFWDIVEAIEGKDPFF 90


>gi|260221649|emb|CBA30424.1| HTH-type transcriptional regulator iscR [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 176

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ R  + I  ++  A+  +  P  +  IA    IS  +L ++   L + G+VE+ RG
Sbjct: 1  MRLSTRGRFAITAMIDLALRESGQPVPLQDIALRHRISLSYLEQVFAKLRQNGLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L    D IT+ D++ A EE
Sbjct: 61 PGGGYSLGFRGDSITVADIIGAIEE 85


>gi|300777499|ref|ZP_07087357.1| possible transcription regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300503009|gb|EFK34149.1| possible transcription regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 143

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR L++ A  +   +RI    I+      E F+ KILQ L + G V++ +G 
Sbjct: 2   FSKTCEYAIRALIFIAQKSKDGSRIGIKDISSGIDSPEYFIAKILQDLSRKGFVQSAKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     + ++ D+V+  +     + C    K +C     C + +  +        
Sbjct: 62  NGGFYMDDANLEQSVADIVREIDGDKLFSGCGLGLK-ECSEDHPCPIHNDFKHIRQEIKT 120

Query: 121 VLTQYSIECLVRN 133
           +L +  I+  V N
Sbjct: 121 MLEESRIQLFVEN 133


>gi|261408945|ref|YP_003245186.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261285408|gb|ACX67379.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 150

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE V+  
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113
             G +L +P   IT+LD+  A     E S F     +  K  CP VG      +  V   
Sbjct: 60  VAGAKLAKPPSGITLLDIYHAVHVVQEGSLFGIHENSDAK--CP-VGKHIQTAIVPVFSA 116

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A  D L + ++E +VR
Sbjct: 117 AQKAMEDTLHEVNLEQIVR 135


>gi|168183029|ref|ZP_02617693.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|237794464|ref|YP_002862016.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182673737|gb|EDT85698.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|229263280|gb|ACQ54313.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YGI+ ++  AI++      +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1  MKISTKGKYGIKAIIDLAINSTEETVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L + +  IT  ++++A E    V E 
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92


>gi|288905395|ref|YP_003430617.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306831475|ref|ZP_07464633.1| transcriptional regulator superfamily protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978384|ref|YP_004288100.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732121|emb|CBI13686.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304426260|gb|EFM29374.1| transcriptional regulator superfamily protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178312|emb|CBZ48356.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 159

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +  + VL   A+  ++ P +   +++   +S+ +L KIL  L +AG++++   
Sbjct: 1   MKLNKSFEQAVYVLTMLALQENHTPVKSHVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKI--DCPLVGSC--GLTSVLRKA 114
           + GG +L +    IT+ DV  A +    V E    +H I  D   V      +   L K 
Sbjct: 61  KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSHVKQVENKVQQTLEKG 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L AF+  L   +I  L++  +
Sbjct: 121 LFAFYHELDTLTIADLLQEEA 141


>gi|47097212|ref|ZP_00234776.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014426|gb|EAL05395.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 67

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1  MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60 RRGG 63
            GG
Sbjct: 61 AHGG 64


>gi|291278641|ref|YP_003495476.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
          desulfuricans SSM1]
 gi|290753343|dbj|BAI79720.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
          desulfuricans SSM1]
          Length = 139

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M++T ++ Y I  +   A++ D   +   IA+   I + FL   L  L   GIV + +G 
Sbjct: 1  MNVTSKSIYAIIAVYELALNKDKFIKSDVIAKKYNIPKRFLEITLSELKTNGIVISKKGG 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L +  ++I+I D++  TE    V  C
Sbjct: 61 GGGFALKKLPEEISIFDIITITENDLKVFNC 91


>gi|226312193|ref|YP_002772087.1| hypothetical protein BBR47_26060 [Brevibacillus brevis NBRC 100599]
 gi|226095141|dbj|BAH43583.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 146

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   +I ++       IA +   + + + ++L  L KAG+V  VR  
Sbjct: 1   MKISSRFSIAVHILSLLSIDSNSHCTSEWIAGSVNTNPVVIRRVLGLLKKAGLV-NVRAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +  DQIT+L++ +A +  E   +         DCP+  +    L  +L +A +
Sbjct: 60  AGGASLAKELDQITLLEIYRAVDVVEEGQLFHIHEQPNPDCPVGANIQFVLELILTRAQH 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A  ++L    +  LV N
Sbjct: 120 AMEEILGGVKMSELVDN 136


>gi|167586740|ref|ZP_02379128.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           ubonensis Bu]
          Length = 127

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  ++ I++   IS  +L ++   L +  IVE+VRG  GG  L R A  +T+ D++ A +
Sbjct: 9   PVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVD 68

Query: 84  ESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA-FFDVLTQYSIECLV 131
           E     +C      D      G C +T  L   LN    + L   S++ LV
Sbjct: 69  EPLDATQCGGKGTCDGSKQPDGHC-MTHELWATLNQKMVEYLDSVSLQDLV 118


>gi|302387002|ref|YP_003822824.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          saccharolyticum WM1]
 gi|302197630|gb|ADL05201.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          saccharolyticum WM1]
          Length = 141

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 1  MHLTKRTDYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M  +  T   I +L+Y        ++N   NR+  I+E   I    + KI+  L  AGI+
Sbjct: 1  MAYSSATYQAISILIYIHYKIRAELYNYLSNRV--ISEQLNIPAPTVVKIMGKLKSAGII 58

Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATE 83
          +   G +GG  L +P   IT+ DV  A E
Sbjct: 59 DVREGMKGGNMLAKPLTDITLFDVFDAME 87


>gi|46201310|ref|ZP_00055264.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 144

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 9  YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          + I  ++  A H    P +  +I     I   +L + LQ +V+AGI+  VRG RGG RL 
Sbjct: 3  FAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQMVRAGILVGVRGPRGGYRLA 62

Query: 68 RPADQITILDVVK 80
          R   +I++ +VV+
Sbjct: 63 RERRRISVGEVVR 75


>gi|322805498|emb|CBZ03062.1| predicted transcriptional regulator of cysteine synthase, Rrf2
          family [Clostridium botulinum H04402 065]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1  MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L + +  IT  ++++A E    V E 
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92


>gi|170759361|ref|YP_001786561.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169406350|gb|ACA54761.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1  MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L + +  IT  ++++A E    V E 
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92


>gi|312880753|ref|ZP_07740553.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784044|gb|EFQ24442.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 157

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT+        ++Y A      P    +I +    +E  + K LQ L++ G++ + +G
Sbjct: 5   MNLTETLSLAFHSMVYLAERRGPRPCSAREIGDHFGATEPLVTKTLQRLLRTGLIRSCKG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG---------SCGLT 108
             GG  L  P +++++L + +A E       C     ++  CP+ G         S  L 
Sbjct: 65  PGGGYSLVVPPEEVSLLSIAEAVEGPLKSQGCALKGCNRPPCPVKGLVDAVTERVSQELA 124

Query: 109 SVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
           S     L   F    + + EC +++R   KK
Sbjct: 125 SKTLAELVECFHGEEETATECTLKHRRRRKK 155


>gi|257459683|ref|ZP_05624792.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
          gracilis RM3268]
 gi|257443108|gb|EEV18242.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
          gracilis RM3268]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+ +  YG+  ++  A  ++  P  I +IAE   +S+ +L +IL  L    +V +++G+ 
Sbjct: 4  LSTKGVYGLAAILQIAKASEVAPISIKEIAERTGVSKNYLEQILNTLRNEKLVCSIKGKN 63

Query: 62 GGVRLCRPADQITILDVVKATEE 84
          GG  L R A +I+  ++  A E+
Sbjct: 64 GGYHLARDASEISFGEIFTALEK 86


>gi|21232974|ref|NP_638891.1| hypothetical protein XCC3545 [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66766953|ref|YP_241715.1| hypothetical protein XC_0614 [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|21114816|gb|AAM42815.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66572285|gb|AAY47695.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 157

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  +H   +  P    QIA     + + + + +  L +AG V++ +G  G
Sbjct: 2  RTDSRLSRMLHVLLHMARSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHHG 61

Query: 63 GVRLCRPADQITILDVVKA 81
          G +L R   Q+T+LDV +A
Sbjct: 62 GWQLARDLAQVTLLDVHRA 80


>gi|296125727|ref|YP_003632979.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
           DSM 12563]
 gi|296017543|gb|ADG70780.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
           DSM 12563]
          Length = 140

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 13/117 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+E+  ++ + +  IL  L KA I+   RG  GG+ L +  + IT+LD+  A  ES    
Sbjct: 30  ISESVQVNPVIIRNILIQLQKADIITVKRGT-GGISLNKKTENITLLDIFNAV-ESLDEG 87

Query: 90  ECFASHK---IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
           + F+ H+     CP+ G+  +  +L+  L++      QY++E  ++ ++++K I+ +
Sbjct: 88  KLFSFHENPNKKCPVGGN--INKILQPKLDS-----VQYAMEKELK-KTTLKDIYKS 136


>gi|217960811|ref|YP_002339375.1| rrf2 family protein [Bacillus cereus AH187]
 gi|217065699|gb|ACJ79949.1| rrf2 family protein [Bacillus cereus AH187]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+ C+  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            D++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 68  LDEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|116512690|ref|YP_811597.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis
          subsp. cremoris SK11]
 gi|116108344|gb|ABJ73484.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis
          subsp. cremoris SK11]
          Length = 154

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K  +  + VL+  A   D     S+ +++   +S+  L K+L+ LV   ++E+   
Sbjct: 1  MKLSKHLEEAVYVLLILATQKDQQALKSKTLSKLLEVSDSSLKKVLRQLVVNNLIESTAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASH 95
          + GG +L +  ++I++ DV+ A E E F  A+   SH
Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADL--SH 95


>gi|148379163|ref|YP_001253704.1| rrf2 family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932538|ref|YP_001383539.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935743|ref|YP_001387088.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|153939009|ref|YP_001390526.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|168178597|ref|ZP_02613261.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|170754484|ref|YP_001780801.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|187780211|ref|ZP_02996684.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
          15579]
 gi|226948445|ref|YP_002803536.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148288647|emb|CAL82728.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152928582|gb|ABS34082.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931657|gb|ABS37156.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|152934905|gb|ABS40403.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|169119696|gb|ACA43532.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|182670637|gb|EDT82611.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|187773836|gb|EDU37638.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
          15579]
 gi|226844524|gb|ACO87190.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295318607|gb|ADF98984.1| rrf2 family protein [Clostridium botulinum F str. 230613]
          Length = 145

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1  MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           +GG  L + +  IT  ++++A E    V E 
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVEL 92


>gi|89902226|ref|YP_524697.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
          ferrireducens T118]
 gi|89346963|gb|ABD71166.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
          ferrireducens T118]
          Length = 182

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  + +  ++  A+     P  +S IA    IS  +L ++   L + G+V + RG
Sbjct: 1  MRLSTKGRFAVTAMIDVALREKLGPVPLSDIAVRQQISLSYLEQMFSKLRQHGLVASTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L + AD+IT+ D++ A E+
Sbjct: 61 PGGGYALGQQADRITVADIIGAVED 85


>gi|190893190|ref|YP_001979732.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190698469|gb|ACE92554.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 154

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   ++E  V
Sbjct: 122 IAAILDNMTLEQFV 135


>gi|313895665|ref|ZP_07829221.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320528904|ref|ZP_08029996.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|312975791|gb|EFR41250.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320138534|gb|EFW30424.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 147

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A + D   P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGIAAMVFLARNYDASSPITIISISEHLGISKIYLEQVFSLLKRSRLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           G +GG +L R   +I   DV+ + E S       A+ K+D 
Sbjct: 61  GSQGGYQLSRHPREINAYDVLSSIEISLIEKAGPATDKMDA 101


>gi|255262733|ref|ZP_05342075.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
          R2A62]
 gi|255105068|gb|EET47742.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
          R2A62]
          Length = 152

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L+ +  Y +  L+  A+       ++  +I++   IS  +L ++   L + G+VE+VR
Sbjct: 1  MKLSTKGRYAMVALVDLALLQSDARLVTLGEISKRQDISLPYLEQLFVKLRREGLVESVR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
          G  GG RL R +  I ++D++ A +E+
Sbjct: 61 GPGGGYRLARASSDIRVVDILGAVDET 87


>gi|239834897|ref|ZP_04683225.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239822960|gb|EEQ94529.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 156

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MH LTK+  YG++ L + A      +  +++IA    IS+ FL  IL  L   GI+ + +
Sbjct: 1   MHMLTKKGKYGLKALAHLAALAPGESAFVAEIAARNNISKKFLDAILLELRNDGILRSKK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKA 114
           G  GG  L +PA +ITI  VV+  +       C +        DC    +C +   +   
Sbjct: 61  GPGGGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCDDCEDHRACQVRRSMLLV 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A   VL   ++E   RN
Sbjct: 121 REAIAGVLDTMTLEQFARN 139


>gi|167006390|ref|YP_001661613.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1]
 gi|166162472|gb|ABY83593.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L +AG+VE+ RG   G  L R  + +T+LDV +A E     
Sbjct: 32  QIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSLARELESMTLLDVYEAVEPGPLF 91

Query: 89  A--------ECFASHKIDCPLVGSC--GLTSVLRKAL------NAFFDVL 122
           A        EC   H I  P + S   G+   +R  L      N   DVL
Sbjct: 92  AMHRATPDPECVVGHGIQ-PAMQSIYEGIEETVRHELARVTLANVLQDVL 140


>gi|332830471|gb|EGK03099.1| hypothetical protein HMPREF9455_01349 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           I +DY      +A +  I+ + + K L  L + GIV +  G+ GG  L +PAD+I + D+
Sbjct: 24  ISSDY------LAGSMNINPVLVRKELSNLRRHGIVVSKEGKNGGSMLAKPADKILLSDI 77

Query: 79  VKATEESFFVAECFASHKIDCPL 101
            +       +    AS    CP+
Sbjct: 78  YRIVSSQTALGNSLASPNPKCPV 100


>gi|315649061|ref|ZP_07902154.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315275496|gb|EFU38851.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE V+  
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGISTSDYIAESVNTNPVVIRRIVGMLSKAGLVE-VKPG 59

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVG---SCGLTSVLRK 113
             G +L +   +IT+LD+  A     E+S F      +    CP VG      +  V   
Sbjct: 60  VAGAKLAKHPAEITLLDIYHAVHVVQEDSLF--SIHENSDTKCP-VGKHIQTAIVPVFSA 116

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  + L + S+E ++RN
Sbjct: 117 AQKAMENTLHEVSLEEIIRN 136


>gi|218133327|ref|ZP_03462131.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992200|gb|EEC58204.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
           43243]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DY-PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ +  Y +RV+   A H   D+ P  + +I+    IS  +L  I+  L K  +V + 
Sbjct: 1   MMISTKGRYALRVMTDLAQHGTGDFIP--LKEISARQGISLKYLESIMTILSKGHMVRSA 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G+ GG  L +  ++  + D+++ TE       C A     C L   C      +   +A
Sbjct: 59  SGKGGGYCLIKSPEEYRVGDILRLTEGDLAPVACLAPDTKKCDLTNECYTLPFWKGLGDA 118

Query: 118 FFDVLTQYSIECLVRNRS 135
             + L  +++  LV   S
Sbjct: 119 INEYLDGHTLADLVSGSS 136


>gi|253701416|ref|YP_003022605.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251776266|gb|ACT18847.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A   +     S IA+   IS   L K+++ LV  G+V+ +RG 
Sbjct: 1   MKLNKASLFALISVLELASDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAFF 119
            GG R     ++ T+LD+++  E      +    +K   P++     +TS +     A  
Sbjct: 61  GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVISELHSVTSEIDTVTRAIL 120

Query: 120 DVLTQYSIECLVRN 133
           D +T   +  L++N
Sbjct: 121 DTIT---LSTLLKN 131


>gi|116052211|ref|YP_788945.1| hypothetical protein PA14_09960 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|296387274|ref|ZP_06876773.1| hypothetical protein PaerPAb_04052 [Pseudomonas aeruginosa PAb1]
 gi|115587432|gb|ABJ13447.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 142

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH   ++ P     IA+    + + + + +  L   G V + +G RG
Sbjct: 2  RNDTRLSRMLHVLIHMARHEGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G RL +P   IT+LD+ +A   S   A   ++   +C
Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98


>gi|23013034|ref|ZP_00052988.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          ++ IAE   IS  +L ++   L K G+V++VRG  GG  L R   Q  I D++ A +E  
Sbjct: 1  MADIAERQEISLSYLEQLFGKLRKGGLVKSVRGPGGGYLLSRIPQQTRISDIILAVDEPI 60

Query: 87 FVAECFASHKIDC 99
              C       C
Sbjct: 61 QTTRCSPGSPAGC 73


>gi|78776924|ref|YP_393239.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497464|gb|ABB44004.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           denitrificans DSM 1251]
          Length = 133

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +     P     ++    I + FL KILQ + K GI+++ +G 
Sbjct: 1   MLITRASEYAILSLIVLS-KASAPMDSETLSTQLSIPKSFLAKILQAMAKHGILKSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP 100
            GG  L      I +L V+ + E ++  V EC  S    CP
Sbjct: 60  NGGFSLLLEPKDIKMLQVIASVEGKAPAVFECSPSM-YSCP 99


>gi|306833586|ref|ZP_07466713.1| transcriptional regulator superfamily protein [Streptococcus bovis
           ATCC 700338]
 gi|304424356|gb|EFM27495.1| transcriptional regulator superfamily protein [Streptococcus bovis
           ATCC 700338]
          Length = 159

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +  + VL   A+  ++ P +   +++   +S+ +L KIL  L +AG++++   
Sbjct: 1   MKLNKSFEQAVYVLTMLALQENHTPVKSRVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKI--DCPLVGSC--GLTSVLRKA 114
           + GG +L +    IT+ DV  A +    V E    +H I  D   V      +   L K 
Sbjct: 61  KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSHVKQVENKVQQTLEKG 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L AF+  L   +I  L++  +
Sbjct: 121 LFAFYHELDTLTIADLLQEEA 141


>gi|116252972|ref|YP_768810.1| Rrf2 family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257620|emb|CAK08717.1| putative Rrf2 family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 162

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 17  CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           CAI    P         +AE   + + +L K LQ L +A +VET  G  GG RL +    
Sbjct: 14  CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLAKTPSD 73

Query: 73  ITILDVVKATE---ESFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQ 124
           I  L++V+A E    SF      A++   C   G      C +  ++ +A  A+ D L +
Sbjct: 74  INFLEIVEAVEGKARSFTCTNIRANNP--CRPEGYCDSKPCAVARIMWEADEAWRDTLRR 131

Query: 125 YSIECLV 131
             +  LV
Sbjct: 132 VRLSDLV 138


>gi|284045053|ref|YP_003395393.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Conexibacter woesei DSM 14684]
 gi|283949274|gb|ADB52018.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
          DSM 14684]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + +T ++ Y +R L     +    P  I+++A    I   FL ++   L +AG++++ RG
Sbjct: 2  ISITTKSPYALRALTELGRLGGSGPVPIAELARRREIPVQFLEQLFAVLRRAGVLKSQRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
           +GG    R   +IT+L++V+  + +F
Sbjct: 62 VKGGYSFAREPGEITVLEIVELLDGAF 88


>gi|291545297|emb|CBL18406.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
          18P13]
          Length = 147

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R    + +L+      D     S+ +A +  +  + + K+L  L  AG+VE  RG
Sbjct: 1  MQISSRFTLAVHILLCLDTFRDQYKVTSEFLAGSTNVHPVMIRKLLGQLKTAGLVEVTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  + +P +QIT+LDV +A +
Sbjct: 61 S-GGASIAKPLEQITLLDVYRAVD 83


>gi|86358962|ref|YP_470854.1| hypothetical protein RHE_CH03364 [Rhizobium etli CFN 42]
 gi|86283064|gb|ABC92127.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   ++E  V
Sbjct: 122 IAAILDNMTLEQFV 135


>gi|218463489|ref|ZP_03503580.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
 gi|218663550|ref|ZP_03519480.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   ++E  V
Sbjct: 122 IAAILDNMTLEQFV 135


>gi|195940887|ref|ZP_03086269.1| BadM/Rrf2 family transcriptional regulator [Escherichia coli
          O157:H7 str. EC4024]
          Length = 130

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
          F+ K++ PL + GI+ +  GR G + L RPA++IT+ D+  +  E
Sbjct: 41 FIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEITLRDIYLSVTE 85


>gi|308371930|ref|ZP_07426693.2| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
          SUMu004]
 gi|308373100|ref|ZP_07431000.2| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
          SUMu005]
 gi|308374277|ref|ZP_07435406.2| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
          SUMu006]
 gi|308376685|ref|ZP_07439652.2| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
          SUMu008]
 gi|308378898|ref|ZP_07484226.2| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
          SUMu010]
 gi|308335059|gb|EFP23910.1| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
          SUMu004]
 gi|308338867|gb|EFP27718.1| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
          SUMu005]
 gi|308342552|gb|EFP31403.1| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
          SUMu006]
 gi|308350358|gb|EFP39209.1| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
          SUMu008]
 gi|308358935|gb|EFP47786.1| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
          SUMu010]
          Length = 159

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 3  LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ + +Y +R ++  A   +    +   +A A  I   FL  IL  L    +V + RGR 
Sbjct: 1  MSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62 GGVRLCRPADQITILDVVK 80
          GG  L RP  +I+I DV++
Sbjct: 61 GGYELARPGTEISIADVLR 79


>gi|310642195|ref|YP_003946953.1| transcriptional regulator, badm/rrf2 family [Paenibacillus polymyxa
           SC2]
 gi|309247145|gb|ADO56712.1| Transcriptional regulator, BadM/Rrf2 family [Paenibacillus polymyxa
           SC2]
          Length = 149

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA----TEESFFVAECFASH 95
            L +IL  L K G++ T  GR GG  L +PA+ I ++DV       +  SF + E   +H
Sbjct: 49  LLRRILSVLAKEGLIGTREGRDGGYHLRKPAESIRLVDVYDVFRSDSRLSFGITETAGTH 108

Query: 96  KIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSIECLVRN 133
               PL G C    L  + ++  ++   VL++Y+I  L   
Sbjct: 109 ----PL-GKCMKSTLEDITQEMDDSIRGVLSKYTIADLANQ 144


>gi|260221138|emb|CBA29404.1| HTH-type transcriptional regulator iscR [Curvibacter putative
          symbiont of Hydra magnipapillata]
          Length = 145

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++   +  +  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1  MRLTTKGRFAVTAMIDLGLRQSSGPVTLAAISQRQQISLSYLEQLFGKLRRHDLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            GG  L R A  IT+ +++ + +E     +C  S K +C
Sbjct: 61 PGGGYTLARKASDITVAEIITSVDEPIDATQC--SGKENC 98


>gi|144900811|emb|CAM77675.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          +IA+   IS   L K+L+ L +AG++E VRG  GG R      + T+LDV++
Sbjct: 29 EIADKYGISTNHLAKVLRSLGRAGLLEAVRGAGGGYRFSGSVKRTTLLDVIQ 80


>gi|317969720|ref|ZP_07971110.1| transcriptional regulator [Synechococcus sp. CB0205]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +S+IAEA  +    L ++L  L +A +VE  RGR+GG RL RPA+ I + +V+KA     
Sbjct: 26  VSEIAEAQGLPAPMLEQLLLQLRRAALVEAKRGRQGGYRLSRPAEAIPVGEVLKAVGAPL 85

Query: 87  FVAECFASHKIDCPLVGSCG--LTSVLRKALNA------FFDVLTQYSIECL 130
            +     S + +  ++ S G  L S L + L         FD+  Q   ECL
Sbjct: 86  VLDAPGDSSRAEQDVLKSMGRRLQSALDRELKQLTLQELLFDL--QSWQECL 135


>gi|309379665|emb|CBX21654.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AF 118
             GG  L  PA +I I  ++ A E+     +C +  K +C     C LT  L + LN   
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPC-LTHDLWENLNKTI 117

Query: 119 FDVLTQYSIECLVRNRSS 136
            D L   +++ ++  ++S
Sbjct: 118 NDYLGSVTLQSIIEQKNS 135


>gi|241205480|ref|YP_002976576.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859370|gb|ACS57037.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 162

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 17  CAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           CAI    P         +AE   + + +L K LQ L +A +VET  G  GG RL +    
Sbjct: 14  CAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYRLAKTPSD 73

Query: 73  ITILDVVKATE---ESFFVAECFASHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQ 124
           I  L++V+A E    SF      A++   C   G      C +  ++ +A  A+ D L +
Sbjct: 74  INFLEIVEAVEGKARSFTCTNIRANNP--CRPEGYCDSKPCAVARIMWEADEAWRDTLRR 131

Query: 125 YSIECLV 131
             +  LV
Sbjct: 132 VRLSDLV 138


>gi|302557214|ref|ZP_07309556.1| transcriptional regulator superfamily protein [Streptomyces
           griseoflavus Tu4000]
 gi|302474832|gb|EFL37925.1| transcriptional regulator superfamily protein [Streptomyces
           griseoflavus Tu4000]
          Length = 144

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L +AG+VE+ RG   G  L R  + +T+LDV +A E     
Sbjct: 32  QIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELESMTLLDVYEAVEPGPLF 91

Query: 89  A--------ECFASHKIDCPLVG-SCGLTSVLRKAL------NAFFDVL 122
           A         C   H I   + G   G+   LR  L      N   DVL
Sbjct: 92  AMHRTTPDQGCVVGHGIQPVMQGIYEGIEETLRHELARVTLENVLRDVL 140


>gi|213029354|ref|ZP_03343801.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 85

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKA 81
            GG  L + A  I + +V+  
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISG 82


>gi|125624777|ref|YP_001033260.1| hypothetical protein llmg_2002 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124493585|emb|CAL98570.1| conserved hypothetical protein [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300071577|gb|ADJ60977.1| hypothetical protein LLNZ_10320 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+K  +  + VL+  A   D     S+ ++    +S+  L K+L+ LV   ++E+   
Sbjct: 1  MKLSKHLEEAVYVLLILATQKDQQALKSKTLSNLLEVSDSSLKKVLRQLVVNNLIESTAS 60

Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASH 95
          + GG +L +  ++I++ DV+ A E E F  A+   SH
Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADL--SH 95


>gi|58617149|ref|YP_196348.1| hypothetical protein ERGA_CDS_04220 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416761|emb|CAI27874.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 145

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P RIS IA    +SE +L +++  L K G++   +G  GG  L      IT+  ++++  
Sbjct: 19  PVRISYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 78

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF-DVLTQYSIECLVRN--RSSI 137
           E+  +  C  ++  DC    +  +T  L   +  +  D L   S+E +V N  RS+I
Sbjct: 79  ENIKITRC-ENNSPDCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNNFRSNI 134


>gi|94985506|ref|YP_604870.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94555787|gb|ABF45701.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +I+EA  +   +L +IL  L   GIV++ +G  GG  L R    I++ +VV+A +     
Sbjct: 30  EISEATGVHRPYLVRILAALTAKGIVKSKKGIGGGYALSRKPRLISLCEVVRAIDGPVAP 89

Query: 89  AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131
             C + +    C     C    +V ++  +A   VL ++S+E LV
Sbjct: 90  LSCISLNWHEPCVEEARCHARATVYQRMRDAMLAVLQEFSVEDLV 134


>gi|295097954|emb|CBK87044.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 148

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA++IT+ D+
Sbjct: 30 FIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEITLRDI 68


>gi|302384457|ref|YP_003820279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302195085|gb|ADL02656.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           ++A   C +   + K++  L KAGI+ T  G  GG    + + ++ +  +  A + + FV
Sbjct: 26  ELASNVCTNPARVRKVMAKLKKAGIITTKEGLEGGYHFAKDSSEVNLKSICDALDVT-FV 84

Query: 89  AECFASHKIDCPLVGSCGLTSVL 111
           +  + S  +D P + + G++ V+
Sbjct: 85  SSSWKSGNVDTPCMIASGMSGVM 107


>gi|188990044|ref|YP_001902054.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731804|emb|CAP49988.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. campestris]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 6   RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RTD  +  +++  +H   +  P    QIA     + + + + +  L +AG V++ +G  G
Sbjct: 26  RTDSRLSRMLHVLLHMARSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHHG 85

Query: 63  GVRLCRPADQITILDVVKA 81
           G +L R   Q+T+LDV +A
Sbjct: 86  GWQLARDLAQVTLLDVHRA 104


>gi|163734987|ref|ZP_02142424.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           litoralis Och 149]
 gi|161391769|gb|EDQ16101.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           litoralis Och 149]
          Length = 140

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + IAE    + + + ++L  L +AG++ + +G  GG RL R   +IT+ DV  A +ES  
Sbjct: 28  ADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLAREPHEITLADVYLALDESLV 87

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
                     +  +  SC + ++L++ + +  + + +  +E L
Sbjct: 88  ATG-------EQEVASSCSVENILQRKVASVLEDVERSLVERL 123


>gi|125654633|ref|YP_001033827.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464902|ref|YP_001041878.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221634495|ref|YP_002523183.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332561319|ref|ZP_08415634.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77386293|gb|ABA81722.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126106717|gb|ABN79242.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221163368|gb|ACM04330.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332274118|gb|EGJ19435.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 169

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A     +  P RI  IA+     + FL  IL  +  AG + + RG
Sbjct: 2   ITQKMKYALKALMVLAEEKSGDRRPLRIEDIAQRSGTPKRFLEHILLDIRNAGYIASTRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   Q+ + ++++  +       C +        DC    +C +  V     
Sbjct: 62  RSGGYLLIKEPAQVPLSELLRMIDGPIAPLPCLSRRSYQKCEDCTDEETCRIRKVFAGIF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LV   ++ ++I  A
Sbjct: 122 WSYLVLIDSLTLADLVGVPAAAEQILAA 149


>gi|16126109|ref|NP_420673.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|221234879|ref|YP_002517315.1| Rrf2 family protein [Caulobacter crescentus NA1000]
 gi|13423309|gb|AAK23841.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|220964051|gb|ACL95407.1| Rrf2 family protein [Caulobacter crescentus NA1000]
          Length = 158

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L+ +  Y +  +   A   D  +     +++IA    IS  +L ++   L + G+V +
Sbjct: 1  MRLSTKGRYAVMAMTDLAKRQDESDGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           RG  GG RL + +D+  I D+V A +E      C
Sbjct: 61 ARGPGGGYRLAKASDETFIADIVLAVDEPLRATRC 95


>gi|167628913|ref|YP_001679412.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167591653|gb|ABZ83401.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 161

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++K+TDY +R L  C +   Y   P  + ++AE   I + FL  I+  + +   V +V
Sbjct: 1  MKISKKTDYALRAL--CDLAECYGKDPIPLRELAEKRGIPKRFLEHIMLYMKEKKWVASV 58

Query: 58 RGRRGGVRLCRPADQITILDVVK 80
           G+ GG  L  P ++IT+ +VV+
Sbjct: 59 PGKYGGYVLACPPEEITLGEVVR 81


>gi|26553766|ref|NP_757700.1| hypothetical protein MYPE3120 [Mycoplasma penetrans HF-2]
 gi|26453773|dbj|BAC44104.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +A +  ++ + + KIL  L  +G++E  RG  GG  + +P DQI+ LD+ KA E
Sbjct: 31 LASSTNVNPVIIRKILLQLKSSGLIEVQRGS-GGSSIAKPLDQISFLDIYKAVE 83


>gi|218682838|ref|ZP_03530439.1| Rrf2 family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 148

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  +   P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTALADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIVDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSI 127
              VL   +I
Sbjct: 122 TRKVLFSTTI 131


>gi|329889571|ref|ZP_08267914.1| rrf2 family protein transcriptional regulator family protein
          [Brevundimonas diminuta ATCC 11568]
 gi|328844872|gb|EGF94436.1| rrf2 family protein transcriptional regulator family protein
          [Brevundimonas diminuta ATCC 11568]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          +++IA    IS  +L ++   L K G+V+++RG  GG RL +  ++  + D+V A +E  
Sbjct: 15 LAEIATRQEISLSYLEQLFARLRKGGLVKSIRGPGGGYRLAKGPEETVVADIVLAVDEPI 74

Query: 87 FVAECFA 93
              C A
Sbjct: 75 RATRCAA 81


>gi|169805235|gb|ACA83733.1| putative transcriptional regulator [Rhodothermus marinus]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          L +I+  L  AG+ + +RG  GGVRL RPA +IT+ ++++  +    +  C 
Sbjct: 47 LARIMLRLTAAGLTDALRGPGGGVRLARPAHEITLFEILQEIDGPEVLNRCI 98


>gi|148242252|ref|YP_001227409.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147850562|emb|CAK28056.1| Predicted transcriptional regulator [Synechococcus sp. RCC307]
          Length = 149

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          ++A+   + E  L +IL  L +A +VE  RGR GG RL R AD +++ DV+ A
Sbjct: 28 ELAKRQELPEARLEQILLQLRQAQLVEARRGRSGGYRLSRRADDLSVQDVLDA 80


>gi|58039649|ref|YP_191613.1| hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
 gi|58002063|gb|AAW60957.1| Hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
          Length = 148

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
          +LQ L +AG++ +VRG +GG RL RP   IT+ ++V+   E
Sbjct: 47 VLQALSRAGLLSSVRGPKGGYRLGRPPRTITLNEIVRTVTE 87


>gi|146299648|ref|YP_001194239.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154066|gb|ABQ04920.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 137

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  Y ++ L+Y A  ++ + +R  +IA+   I + FL +IL  L +   V + +G+ 
Sbjct: 2   LSHKAKYALKALLYLAEQDENHISRTVEIADGANIPKKFLEQILLDLKRGRFVSSKQGKF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + IT+ ++ +  + +  +  C    F     DC     C L   L    + 
Sbjct: 62  GGYYLIKSKNDITLAEIHRLFDGAIALLPCASLNFYEPCSDCKTESECSLRHGLMLIRDK 121

Query: 118 FFDVLTQYSIECLVRN 133
               +   +I  LV+ 
Sbjct: 122 TLKAMEGITIASLVKK 137


>gi|144898449|emb|CAM75313.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 151

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 4   TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +K+  + I  ++  A H    P +  +I     I   +L + LQ LV++G++  VRG +G
Sbjct: 5   SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRSGLLVGVRGPKG 64

Query: 63  GVRLCRPADQITILDVVK-----ATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G RL R   +I++ +VV+      T E  F  V       K+  P+ G   LT  +   L
Sbjct: 65  GYRLARERRRISVGEVVRVVRAMETAEDPFQDVPASDLGAKVIRPMWGD--LTEEIMDRL 122

Query: 116 NAF-FDVL 122
           +A  FD L
Sbjct: 123 DAITFDDL 130


>gi|299821160|ref|ZP_07053048.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816825|gb|EFI84061.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 146

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +   GI +L Y  I  D       IA +   +   + +++  LVKAG++E+  G 
Sbjct: 1   MKYSHKLSDGIHILAYMCICKDSDLSSKAIAASIESNPSLVRRMMAQLVKAGLIESRPGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
              V L +PA++I++L++ +A E+   +     +    C + G+      ++  LN  +D
Sbjct: 61  VAPV-LTKPAEEISLLEIYQAIEQDHRILHVDKNTNPRCIVGGN------IQHTLNGIYD 113

Query: 121 VLTQYSIECLVR 132
            L Q ++E  +R
Sbjct: 114 QL-QANVEQEMR 124


>gi|284029052|ref|YP_003378983.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
           17836]
 gi|283808345|gb|ADB30184.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
           17836]
          Length = 144

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L +AG+VE+ RG   G  L R    IT+LDV  A E     
Sbjct: 32  QIAGSANTNPVVIRRLLGELREAGLVESRRGAGAGWSLTRDLASITLLDVYDAIEPGPL- 90

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR---NRSSIKKIFNA 143
              FA H+ + P  G C +   ++ AL+  +       IEC VR   ++++++ +  A
Sbjct: 91  ---FALHRAN-PDDG-CVVGHGIQPALHDVY-----AGIECTVRTELSKTTLEDVLQA 138


>gi|268317560|ref|YP_003291279.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
          DSM 4252]
 gi|262335094|gb|ACY48891.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
          DSM 4252]
          Length = 144

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          L +I+  L  AG+ + +RG  GGVRL RPA +IT+ ++++  +    +  C 
Sbjct: 41 LARIMLRLTAAGLTDALRGPGGGVRLARPAHEITLFEILQEIDGPEVLNRCI 92


>gi|331004367|ref|ZP_08327840.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411097|gb|EGG90516.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 130

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T+  DY +R++   A+        +++A+   + +   +K+L  L+K+ ++ ++RG 
Sbjct: 1  MLITREMDYAVRIIR--ALKEGTKVSATEVAKKEHLPQAITYKVLNSLLKSKLIGSMRGV 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L       T+ D+  A  E   + EC 
Sbjct: 59 NGGYYLKCDLSNTTLYDICTALGEDMSITECI 90


>gi|258509392|ref|YP_003172143.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257149319|emb|CAR88292.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG]
 gi|259650674|dbj|BAI42836.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 146

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 13/124 (10%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A H DY + I +I+E   I    + K    L K+GI+ +  G  GG+RL +    IT+ +
Sbjct: 23  AQHEDYLS-IQKISEMLNIPVPSIKKNSSTLKKSGILTSKTGLNGGLRLAKTPQTITVYE 81

Query: 78  VVKATEESFFVAECFASHK-------IDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           ++ A E +   A  F  H+       ++   V S     T+VL +A +A   VL Q SI 
Sbjct: 82  ILTAIEGT---APLFKLHQEIDPAAFVNGERVTSWLAASTNVLNQAEDAMVQVLKQTSIA 138

Query: 129 CLVR 132
            L  
Sbjct: 139 DLAE 142


>gi|325105184|ref|YP_004274838.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324974032|gb|ADY53016.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 136

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +  I+ + + K +  L KAG+V++  G+ GG  L + AD I + D+ KA       A
Sbjct: 29  IAGSININSVLVRKEITELRKAGLVDSKEGKNGGFFLAKKADDINLGDLFKAVYPESIFA 88

Query: 90  ECFASHKIDCPL 101
               S   +CP+
Sbjct: 89  FAKNSPNPNCPI 100


>gi|307327145|ref|ZP_07606334.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
 gi|306887226|gb|EFN18223.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
          violaceusniger Tu 4113]
          Length = 149

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +L+  A  +D  P   +++A     +   + K+L PL + G+V  V+GR GG  L RP D
Sbjct: 14 LLLAVAAEDDGAPLSSAELARMLNTNPSLVRKLLVPLAEEGLVVCVKGRTGGAMLGRPTD 73

Query: 72 QITILDVVK 80
          +IT+ ++ +
Sbjct: 74 RITLAEIYR 82


>gi|152987101|ref|YP_001346310.1| hypothetical protein PSPA7_0924 [Pseudomonas aeruginosa PA7]
 gi|150962259|gb|ABR84284.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH   ++ P     IA     + + + + +  L   G V + +G RG
Sbjct: 2  RNDTRLSRMLHVLIHMARHEGPATSEAIAHMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G RL +P   IT+LD+ +A   S   A   ++   +C
Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98


>gi|296102479|ref|YP_003612625.1| putative transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295056938|gb|ADF61676.1| putative transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RP +QIT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRNGSIHLGRPPEQITLRDI 79


>gi|260426151|ref|ZP_05780130.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
 gi|260420643|gb|EEX13894.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
          Length = 162

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++T Y ++ LM   A+       I ++++     + FL  IL  L KAG +   RGR 
Sbjct: 2   ITQKTKYALKSLMTLGALEKGAALTIEEVSQRTGAPKRFLEHILLDLRKAGYLGARRGRA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L R   ++++ ++++  +       C +        DC    +C L  V  +   +
Sbjct: 62  GGYFLIREPSKVSLGELLQQIDGPIAPLPCLSRRSYRRCDDCDDEEACQLRRVFGEIFWS 121

Query: 118 FFDVLTQYSIECLVRN 133
           +  ++   +++ L+R+
Sbjct: 122 YLLLIESLTLQDLLRD 137


>gi|254468307|ref|ZP_05081713.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
          KB13]
 gi|207087117|gb|EDZ64400.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
          KB13]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A++  + P  +  ++E   IS  +L ++   L K  IV ++RG
Sbjct: 1  MKLTTKGRFAVSAILDIALNQKNGPVTLLAVSERQGISLSYLEQLFSKLRKGEIVSSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG R+ +    IT+  ++ A +E     +C
Sbjct: 61 PGGGYRIKKAYTDITVRQIISAVDEKIDATQC 92


>gi|239926607|ref|ZP_04683560.1| hypothetical protein SghaA1_00120 [Streptomyces ghanaensis ATCC
           14672]
 gi|291434916|ref|ZP_06574306.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291337811|gb|EFE64767.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
            QIA +   + + + ++L  L +AG+VE+ RG   G  L R    +T+LDV +A E    
Sbjct: 31  EQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELGTMTLLDVYEAVEPGPL 90

Query: 88  VA--------ECFASHKIDCPLVG-SCGLTSVLRKAL------NAFFDVL 122
            A         C   H I   + G   G+   LR  L      N   DVL
Sbjct: 91  FAMHRTTPDQGCVVGHGIQPAMQGIYEGIEETLRHELARVTLENVLRDVL 140


>gi|296124240|ref|YP_003632018.1| hypothetical protein Plim_4008 [Planctomyces limnophilus DSM
          3776]
 gi|296016580|gb|ADG69819.1| protein of unknown function UPF0074 [Planctomyces limnophilus DSM
          3776]
          Length = 187

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          ++L  L KAG++ET RG  GG RL RPA  I + +V  A  ES
Sbjct: 44 RLLTQLQKAGLIETRRGASGGSRLARPASAIHLGEVFDAVVES 86


>gi|315647519|ref|ZP_07900621.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315276958|gb|EFU40299.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 160

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           MH+    +  +  L+   + N  P++       I++    S  +  K+L+ LV A I+ +
Sbjct: 1   MHMKTGVEQSVYALV---LLNMLPDKAVLPGEAISQQLGASATYFQKLLRKLVTADIITS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS-CGLTSVLRK 113
           V G +GG RL +  + I + DV  A E  +S + +       +D     S C LT+++ +
Sbjct: 58  VPGIKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLEKEESCCLLTNLMEE 117

Query: 114 ALNAFFDVLTQYSIECL 130
           A +++  VL + +I  L
Sbjct: 118 AESSWKAVLKRETIASL 134


>gi|197117827|ref|YP_002138254.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197087187|gb|ACH38458.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 154

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           S IA+   IS   L K+++ LV  G+V+ +RG  GG R     ++ T+LD+++  E    
Sbjct: 28  SDIADKYGISSHHLAKVMRNLVHQGVVQAMRGVGGGYRFAGNVNRTTLLDIIQLFETLES 87

Query: 88  VAECFASHKIDCPLVGSC-GLTSVLRKALNAFFDVLT 123
             +    +K   P+V     +TS +     A  D +T
Sbjct: 88  ELDLPHWNKAAEPVVSELHSVTSEIDTVTRAILDTVT 124


>gi|182416626|ref|ZP_02948040.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          butyricum 5521]
 gi|237668057|ref|ZP_04528041.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          butyricum E4 str. BoNT E BL5262]
 gi|182379518|gb|EDT77004.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          butyricum 5521]
 gi|237656405|gb|EEP53961.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          butyricum E4 str. BoNT E BL5262]
          Length = 142

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+R L+  C    +    +  I+E   ISE +L +I   L K GI++  +G
Sbjct: 1  MKISTKGRYGLRALIDICVYSRNEMATVKSISERQNISERYLEQIFSSLRKGGIIKAKKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           +GG  L       TI  ++   E    + +  A  
Sbjct: 61 AQGGYFLTDEPKNFTIAKILSVLEGDLLLIDVEAED 96


>gi|239828144|ref|YP_002950768.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. WCH70]
 gi|239808437|gb|ACS25502.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
          Length = 136

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 7   TDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +D+ I V     +      R++   IA++  +    L KIL  L K  I+ +  G +GG 
Sbjct: 3   SDFSIAVHCVAYLAQKQSQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGF 62

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
            L    + IT+  + K T E   V +C  S++ +CP+  +    L  V   A   F + L
Sbjct: 63  SLNDSPEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRNLSNILIRVFHNAEEHFLNYL 121

Query: 123 TQYSIECLV 131
              +I+ ++
Sbjct: 122 KGVTIKDII 130


>gi|227510984|ref|ZP_03941033.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri
           ATCC 11577]
 gi|227085726|gb|EEI21038.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus buchneri
           ATCC 11577]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  + +L+  A+  D+ P +   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1   MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L    +++T+LDV  A E                P++ S G+ S +      FF
Sbjct: 61  KGGGFSLSYDINRMTLLDVYDAIEGP-------------SPIIKSTGIASRI------FF 101

Query: 120 D 120
           D
Sbjct: 102 D 102


>gi|313676812|ref|YP_004054808.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
           DSM 4126]
 gi|312943510|gb|ADR22700.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
           DSM 4126]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR ++Y A  +   +R  I  IAE       F  KIL  LVK  IV ++ G 
Sbjct: 2   FSKSCEYGIRAVIYIATQSKKTDRVKIGDIAEKINSPVAFTAKILGLLVKNKIVSSITGP 61

Query: 61  RGGVRLCRP-ADQITILDVVKATEES-------FFVAECFASHKIDCPL 101
           +GG  + +   D++ + D+V+  + +         + EC AS    CP+
Sbjct: 62  KGGFYIEQNRLDKVFLKDIVEVIDGNKIYKGCGLGLNECSASQ--PCPV 108


>gi|227893626|ref|ZP_04011431.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864486|gb|EEJ71907.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
          Length = 154

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R    I +L +  I+    P     IA +   S + + K++  L KAG++ET  G
Sbjct: 1  MKVSTRFSDAIHLLAFIHIYKGQIPLSSENIAGSIETSPVMVRKLMSELRKAGLIETKHG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
               +L +P DQI++LDV  A E+ 
Sbjct: 61 TPDP-KLAKPTDQISLLDVYLAVEKD 85


>gi|322383829|ref|ZP_08057576.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151645|gb|EFX44718.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +   + + + +I+  L KAG+V+ VR   GG  L +  D+IT+LD+ KA  +     
Sbjct: 20  VAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSGTGGAYLLKSLDEITLLDIYKAV-DVVEEG 77

Query: 90  ECFASHK---IDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           E F  H+    +CP+  +    L  VL +A  A   VL   +++ LV + S
Sbjct: 78  ELFQMHEDPNPNCPVGANIQSVLMLVLGRAQEAMEQVLKDITMDELVTSLS 128


>gi|206969275|ref|ZP_03230230.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218235528|ref|YP_002368113.1| rrf2 family protein [Bacillus cereus B4264]
 gi|206736316|gb|EDZ53474.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218163485|gb|ACK63477.1| rrf2 family protein [Bacillus cereus B4264]
 gi|326941103|gb|AEA16999.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 137

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           D+I +  + + T E     +C  S+         C + S +RK L A F
Sbjct: 69  DEINLWHIYQITSEGALQPKCPESNN-------QCVVGSNMRKVLFAIF 110


>gi|229542592|ref|ZP_04431652.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229327012|gb|EEN92687.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 145

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L    ++ D  +    +AE+   + + + KI+  L ++G++E   G 
Sbjct: 1   MSISSRFAVGIHILALIEMNKDGVSSSEFLAESVNTNPVVIRKIMGMLKRSGLIEVHPG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           + G RL +    IT+LDV KA       A  F+ H+   P    C +   ++  +   F+
Sbjct: 60  KAGARLAKALSDITLLDVYKAVNVVQDKA-LFSIHRNPNP---KCPVGRNIQNTIEPIFE 115

Query: 121 --------VLTQYSIECLVRN 133
                   VL Q ++E +V++
Sbjct: 116 ASQMAMEKVLEQVTLEDVVKD 136


>gi|89900960|ref|YP_523431.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345697|gb|ABD69900.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 178

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  ++ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
             GG  L R   +IT+ +++ + +E      C  + K +C   G+  +T  L  +LN   
Sbjct: 61  PGGGYTLARNPAEITVAEIITSVDEPIDATHC--AGKENCLGEGARCMTHDLWTSLNTKM 118

Query: 118 --FFDVLT 123
             F D +T
Sbjct: 119 VEFLDSVT 126


>gi|30021504|ref|NP_833135.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228973382|ref|ZP_04133970.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|29897059|gb|AAP10336.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228786362|gb|EEM34353.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
          Length = 131

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 3   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 62

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           D+I +  + + T E     +C  S+         C + S +RK L A F
Sbjct: 63  DEINLWHIYQITSEGALQPKCPESNN-------QCVVGSNMRKVLFAIF 104


>gi|295103291|emb|CBL00835.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii
          SL3/3]
          Length = 143

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +TK TDY +R+L    + +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 1  MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L    D  ++ D++    E   +  C 
Sbjct: 59 LGGCELSCDLDATSLYDLMGVVGERGILCACM 90


>gi|227523176|ref|ZP_03953225.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii
           ATCC 8290]
 gi|227089650|gb|EEI24962.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus hilgardii
           ATCC 8290]
          Length = 159

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  + +L+  A+  D+ P +   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1   MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L    +++T+LDV  A E                P++ S G+ S +      FF
Sbjct: 61  KGGGFSLSYDINRMTLLDVYDAIEGP-------------SPIIKSTGIASRI------FF 101

Query: 120 D 120
           D
Sbjct: 102 D 102


>gi|256787721|ref|ZP_05526152.1| hypothetical protein SlivT_24808 [Streptomyces lividans TK24]
 gi|289771609|ref|ZP_06530987.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289701808|gb|EFD69237.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L ++G+VE+ RG   G  L R    +T+LDV +A E     
Sbjct: 32  QIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90

Query: 89  AECFASHKI--DCPLVGSCGLTSVLRKALNAFFDV----LTQYSIECLVRN 133
              FA H+   D   V   G+  V+R       +     L + ++E ++RN
Sbjct: 91  ---FAMHRTTPDQGCVVGHGIQPVMRDVYEGIEETVRHELARVTLEDVLRN 138


>gi|170723498|ref|YP_001751186.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
          W619]
 gi|169761501|gb|ACA74817.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
          W619]
          Length = 150

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R  + 
Sbjct: 1  MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGMET 60

Query: 73 ITILDVVKATEESFFVAEC 91
          I +  V+ A  ES     C
Sbjct: 61 IQVAQVIDAVNESVDATRC 79


>gi|81428601|ref|YP_395601.1| hypothetical protein LSA0990 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610243|emb|CAI55292.1| Hypothetical protein LCA_0990 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 144

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ D       IA +   +   + +++  LVKA ++E+   R
Sbjct: 1   MKYSHKLSDAIHILAYVEIYQDGDLSSQSIAGSIESNASLVRRLMSLLVKADLLES---R 57

Query: 61  RGGV--RLCRPADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            G +  +L RPA+QI++LDV +A  T++            ID      C + + ++ ALN
Sbjct: 58  PGTIAPKLARPAEQISVLDVYQALDTDQQLL--------HIDEKTNPQCLVGANIQSALN 109

Query: 117 AFFD 120
             +D
Sbjct: 110 DAYD 113


>gi|323341526|ref|ZP_08081765.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
 gi|323091047|gb|EFZ33680.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LTK  +    ++   A  N   P     I      S+ +L KI++ LV  G++ +  G
Sbjct: 9  MQLTKGFEQAACIMALLATQNRGIPLSSHVIHTRVSSSQTYLKKIMRKLVVGGLITSASG 68

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
            GG  L R  + IT+L +V A E
Sbjct: 69 NSGGFSLAREPEDITLLQIVSAVE 92


>gi|293394859|ref|ZP_06639149.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
          odorifera DSM 4582]
 gi|291422610|gb|EFE95849.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
          odorifera DSM 4582]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A +
Sbjct: 1  MLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDAAE 60

Query: 73 ITILDVVKATEESFFVAEC 91
          I +  V+ A +ES     C
Sbjct: 61 IAVGAVITAVDESVDATRC 79


>gi|241666997|ref|YP_002985081.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
          leguminosarum bv. trifolii WSM1325]
 gi|240862454|gb|ACS60119.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
          leguminosarum bv. trifolii WSM1325]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH D   +      IA+    + + + + +  L + G V + +G  G
Sbjct: 2  RNDSRLSRMLHVLIHMDKHQHSATSDMIAKMLNTNPVVVRRTMAGLREKGYVRSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L RP  +IT+LDV +A  E    A   A  + +C
Sbjct: 62 GWTLVRPLSEITLLDVYRAIGEPHLFAIGPADDQPEC 98


>gi|23006957|ref|ZP_00049037.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 73

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L  +G
Sbjct: 1  MRLTRYTDYALRTLIYVGLREPRQSSIAEIAAAYGISESHLTKVVHQLGGSG 52


>gi|288961953|ref|YP_003452263.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914233|dbj|BAI75719.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+K TDY I VL   A H    + ++ +A+   +    + K+++ +  AG+  + RG  G
Sbjct: 4  LSKLTDYAIVVLSEMARHVGTVHTVAHLADRTGVPAPTVAKLMKAMTPAGLTTSQRGAAG 63

Query: 63 GVRLCRP 69
          G  L RP
Sbjct: 64 GYALSRP 70


>gi|295135463|ref|YP_003586139.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
           SM-A87]
 gi|294983478|gb|ADF53943.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
           SM-A87]
          Length = 135

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L + A   +  P + S+IA++  IS  FL  IL  L K+G + + +G+ 
Sbjct: 2   LSKKTKYGIKALTFIARQPERNPVQTSEIAKSENISLKFLESILLILRKSGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I +  +++  E    +  C + +      DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLIKEPEDIKMTAIIRVLEGPIAMVPCVSLNYYEKCEDCPDEQTCAVHKLMIQVRDS 121

Query: 118 FFDVLTQYSI 127
             +VL + ++
Sbjct: 122 TLNVLGENTL 131


>gi|332885400|gb|EGK05649.1| hypothetical protein HMPREF9456_02451 [Dysgonomonas mossii DSM
           22836]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +  I+ + + K L  L K  IV +  G+ GG  L RPA++I I DV K       + 
Sbjct: 29  LAGSMNINPVLVRKELSNLRKHNIVISKEGKNGGCMLARPANEIFISDVYKIVSTHSILG 88

Query: 90  ECFASHKIDCPL 101
              AS    CP+
Sbjct: 89  NELASPNPKCPV 100


>gi|153814006|ref|ZP_01966674.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC
          27756]
 gi|145848402|gb|EDK25320.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC
          27756]
          Length = 86

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          K+G++E  RG +GG +L +   + T+ DVV A E  F V EC
Sbjct: 3  KSGLIEIRRGPKGGYQLAKDIGEFTLYDVVTAIEPDFAVMEC 44


>gi|329938564|ref|ZP_08287989.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329302537|gb|EGG46428.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 147

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
          QIA +   + + + ++L  L +AG+VE+ RG   G  L R    IT+LDV +A E     
Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSLARELGSITLLDVYEAVEPGPL- 90

Query: 89 AECFASHK 96
             FA H+
Sbjct: 91 ---FAMHR 95


>gi|313109618|ref|ZP_07795565.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882067|gb|EFQ40661.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 142

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH   ++ P     I +    + + + + +  L   G V + +G RG
Sbjct: 2  RNDTRLSRMLHVLIHMARHEGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G RL +P   IT+LD+ +A   S   A   ++   +C
Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98


>gi|298368426|ref|ZP_06979744.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282429|gb|EFI23916.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +A +VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAQLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  PA +I I  ++ A E+      C +  K +C     C    L   L K +N
Sbjct: 61  PGGGYILAAPASEINIAQIIAAAEDRLDATRCGS--KANCHHGAPCLTHDLWENLNKTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 119 DYLSSVTLQSI 129


>gi|78223304|ref|YP_385051.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194559|gb|ABB32326.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 143

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A   +      +IA    +S   L KI++ LV  G+V+ VRG 
Sbjct: 1   MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102
            GG R      + T+LD+++  E      +      +D P++
Sbjct: 61  GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPIL 102


>gi|296126632|ref|YP_003633884.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
          DSM 12563]
 gi|296018448|gb|ADG71685.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira
          murdochii DSM 12563]
          Length = 149

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          +  IAE   +S   L K+LQ LVKAG + + +G  GG ++    +  + L++ +  E   
Sbjct: 26 LKDIAERFDVSSNHLSKVLQALVKAGYLTSSKGPAGGFKIAEGKENTSFLEIYETIEGKN 85

Query: 87 FVAECFASHKID 98
          +   C    K D
Sbjct: 86 WQRSCLFHSKCD 97


>gi|85703168|ref|ZP_01034272.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius sp. 217]
 gi|85672096|gb|EAQ26953.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius sp. 217]
          Length = 153

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          IS  +L ++   L +A +V +VRG  GG RL RPA +I + D++ A +E+ 
Sbjct: 37 ISLPYLEQLFVKLRRAELVTSVRGPGGGYRLMRPASEIRVSDILAAVDETI 87


>gi|304408323|ref|ZP_07389971.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342792|gb|EFM08638.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 149

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KID 98
           FL +I+  LV+AG+VE   GR GG  L +    IT+ DV  A +     ++C      + 
Sbjct: 46  FLRRIMVHLVQAGMVEAKEGRDGGYFLRKSPADITLADVYMAVK-----SDCGTEQASVA 100

Query: 99  CPLVGSCG---------LTSVLRKALNAFFDVLTQYSIECLVRN 133
               G CG         L S++ +A     D L Q++++ ++R 
Sbjct: 101 ADDEGGCGAAGQQLDSVLESIMGQAEQHTIDYLRQFTVDDVMRQ 144


>gi|126728568|ref|ZP_01744383.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sagittula stellata E-37]
 gi|126710498|gb|EBA09549.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Sagittula stellata E-37]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L+  ++   D    +  +++   +S  +L ++   L +AG+VE+VRG
Sbjct: 1  MKLSTKGRYAMVALVDISLQGCDDLVTLGDVSKRQDLSLPYLEQLFVKLRRAGLVESVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL +    I ++D++ A +E+
Sbjct: 61 PGGGYRLAKSPSDIRVVDILAAVDET 86


>gi|153011671|ref|YP_001372885.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563559|gb|ABS17056.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           ++ IA    IS+ FL  IL  L   GI+ + +G  GG  L +PA +ITI  VV+  +   
Sbjct: 27  VADIATQNNISKKFLDAILLELRNDGILRSKKGPGGGYSLSKPASEITIGQVVRVLDGPL 86

Query: 87  FVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
               C +        DC    +C +   +     A   VL + ++E   RN
Sbjct: 87  APIRCASRTAYEPCNDCVDHRACQVRRSMLLVREAIAGVLDRMTLEQFTRN 137


>gi|325201913|gb|ADY97367.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240149]
 gi|325208335|gb|ADZ03787.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis NZ-05/33]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  PA +I I  ++ A E+     +C +  K +C     C    L   L K +N
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 119 DYLGSVTLQSI 129


>gi|15599364|ref|NP_252858.1| hypothetical protein PA4169 [Pseudomonas aeruginosa PAO1]
 gi|218889502|ref|YP_002438366.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254237049|ref|ZP_04930372.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242853|ref|ZP_04936175.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9950377|gb|AAG07556.1|AE004833_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126168980|gb|EAZ54491.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196231|gb|EAZ60294.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769725|emb|CAW25485.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 142

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH   ++ P     I +    + + + + +  L   G V + +G RG
Sbjct: 2  RNDTRLSRMLHVLIHMARHEGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G RL +P   IT+LD+ +A   S   A   ++   +C
Sbjct: 62 GWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPEC 98


>gi|315651167|ref|ZP_07904198.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
 gi|315486565|gb|EFU76916.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
          Length = 130

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +     ++IA+   + +   +K+L  L+K+ +V ++RG 
Sbjct: 1   MLITREMDYAVRVVR--ALKGNTKISATEIAKKEHLPQAITYKVLNSLLKSKLVGSMRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
            GG  L       T+ D+  A  E   + EC      DC     G C L     +  N+ 
Sbjct: 59  NGGYYLKCDLTCTTLYDICVALGEDMSITECIRDG-YDCVNNRCGECTLNREFNRIQNSL 117


>gi|320332910|ref|YP_004169621.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754199|gb|ADV65956.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL   ++H D+      IA +   + + +  I+  L +AG++ T RG  G V L R 
Sbjct: 8   AVHVLALISMHPDHARTSEAIAGSVGTNPVVVRNIIGLLRRAGLLRTQRGVAGAV-LTRT 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
            D +T+LDV +A      +          CP VGS
Sbjct: 67  PDAVTLLDVYRAVNPPEHLFRLHEQPNPQCP-VGS 100


>gi|161870250|ref|YP_001599421.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|161595803|gb|ABX73463.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           053442]
          Length = 164

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 17  MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 76

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  PA +I I  ++ A E+     +C +  K +C     C    L   L K +N
Sbjct: 77  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 134

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 135 DYLGSVTLQSI 145


>gi|15677241|ref|NP_274394.1| hypothetical protein NMB1378 [Neisseria meningitidis MC58]
 gi|121635084|ref|YP_975329.1| DNA-binding protein [Neisseria meningitidis FAM18]
 gi|218768395|ref|YP_002342907.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           Z2491]
 gi|254805173|ref|YP_003083394.1| putative transcription factor [Neisseria meningitidis alpha14]
 gi|304387294|ref|ZP_07369487.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria meningitidis ATCC 13091]
 gi|313668524|ref|YP_004048808.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|60416285|sp|P0A0Y9|Y1593_NEIMA RecName: Full=Putative HTH-type transcriptional regulator NMA1593
 gi|60416286|sp|P0A0Z0|Y1378_NEIMB RecName: Full=Putative HTH-type transcriptional regulator NMB1378
 gi|7413461|gb|AAF62328.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|120866790|emb|CAM10543.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           FAM18]
 gi|121052403|emb|CAM08736.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           Z2491]
 gi|254668715|emb|CBA06505.1| putative transcription factor [Neisseria meningitidis alpha14]
 gi|254669828|emb|CBA04202.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|261392349|emb|CAX49885.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
           IscR [Neisseria meningitidis 8013]
 gi|304338677|gb|EFM04794.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria meningitidis ATCC 13091]
 gi|308389496|gb|ADO31816.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           alpha710]
 gi|313005986|emb|CBN87445.1| putative transcriptional regulator [Neisseria lactamica 020-06]
 gi|316984196|gb|EFV63174.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis H44/76]
 gi|319410641|emb|CBY91011.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
           IscR [Neisseria meningitidis WUE 2594]
 gi|325128433|gb|EGC51314.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis N1568]
 gi|325132429|gb|EGC55122.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M6190]
 gi|325134386|gb|EGC57031.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M13399]
 gi|325136465|gb|EGC59071.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M0579]
 gi|325138418|gb|EGC60986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis ES14902]
 gi|325140404|gb|EGC62925.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis CU385]
 gi|325144688|gb|EGC66986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240013]
 gi|325198522|gb|ADY93978.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis G2136]
 gi|325200003|gb|ADY95458.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis H44/76]
 gi|325204371|gb|ADY99824.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240355]
 gi|325205856|gb|ADZ01309.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M04-240196]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L  PA +I I  ++ A E+     +C +  K +C     C    L   L K +N
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGS--KANCHHGAPCLTHDLWENLNKTIN 118

Query: 117 AFFDVLTQYSI 127
            +   +T  SI
Sbjct: 119 DYLGSVTLQSI 129


>gi|328543025|ref|YP_004303134.1| HTH-type transcriptional regulator rrf2-like protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412771|gb|ADZ69834.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 142

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           RI ++AE     + FL  IL  L +AG++ + RGR+GG  L +    ++I ++++  +  
Sbjct: 15  RIEEVAELSGAPKRFLEHILLDLKRAGLIGSRRGRKGGYELIKEPRHVSIAEILRLIDGP 74

Query: 86  FFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
                C +        DC    SC + +V     +A+  ++   ++  L +    +++
Sbjct: 75  IAPLPCLSRRAYRPCEDCKDEKSCRVRAVFGGFYSAYILMIESLTLADLQQESQPLER 132


>gi|315641499|ref|ZP_07896571.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
          15952]
 gi|315482787|gb|EFU73311.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
          15952]
          Length = 157

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LTK  + G+ V+ M        P   + I +    S  +  KI++ LV +G+  +V G
Sbjct: 1  MQLTKAFEQGVCVMAMLTTQMPSIPVASATIHQRLGTSPTYTQKIVRKLVVSGLATSVSG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
          + GG  L R +  I+ LDVV+A E
Sbjct: 61 QGGGFCLARASKDISCLDVVEAIE 84


>gi|237734275|ref|ZP_04564756.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382505|gb|EEO32596.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 131

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L   TDY IR+++Y AI  D      +++E   I +  +FKI + L    I+    G 
Sbjct: 1  MQLKVSTDYAIRIVLYIAIKKDIVQS-KELSETLGIPQSTVFKIGKKLSDNEIISIATGI 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
          +GG +L +    I+I  ++   E +  +  C    K
Sbjct: 60 QGGFKLKKQPKDISIFSIIDIFEPTIRINSCLEEDK 95


>gi|329114662|ref|ZP_08243421.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
           DM001]
 gi|326696142|gb|EGE47824.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
           DM001]
          Length = 160

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L++  DY I +L+            + +A    + E  + K+L+ L   G V + RG 
Sbjct: 8   LKLSRLADYAIVILVKLGEQEGVVTSPT-LAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL R    I++  V+ A +    +  C    + D  +  SCGL         A   
Sbjct: 67  KGGYRLARHLADISVASVITAVDGKIALTACVDGGECDTGV--SCGLCGSWDTINQAIRT 124

Query: 121 VLTQYSIECLVRNRSS 136
            L   S+E + R+++S
Sbjct: 125 TLEGISLESM-RSKAS 139


>gi|160942852|ref|ZP_02090092.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445904|gb|EDP22907.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium
          prausnitzii M21/2]
          Length = 146

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +TK TDY +R+L    + +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 4  MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L    D  ++ D++    E   +  C 
Sbjct: 62 LGGCALSCDLDATSLYDLMGVVGERGILCACM 93


>gi|270261370|ref|ZP_06189643.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044854|gb|EFA17945.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL K GI+ +  GR G + L RP ++IT+ D+
Sbjct: 59 FIRKLMVPLTKNGIIVSTLGRNGSIHLGRPVEEITLRDI 97


>gi|251799818|ref|YP_003014549.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247547444|gb|ACT04463.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 141

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 24  PNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           P R++    IA+        + K++  L K+G V+T  G  GG RL    D +T+ DV +
Sbjct: 19  PERMASSEMIADNVGTHSARVRKVMSGLRKSGFVDTREGAGGGYRLTIDPDVVTLGDVYR 78

Query: 81  A-TEESFFVAECFASHKIDCPLVGSC------GLTSVLRKALNAFFDVLT 123
              + SF  + C     +DC +VGS       G+     K L  +F  +T
Sbjct: 79  VMAQGSFIPSWCSGDPGMDC-VVGSNMNQVMFGIFCTAEKQLEGYFSGIT 127


>gi|330807635|ref|YP_004352097.1| transcription factor, Rrf2 family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327375743|gb|AEA67093.1| putative Transcription factor, Rrf2 family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 150

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R    
Sbjct: 1  MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQG 60

Query: 73 ITILDVVKATEESFFVAEC 91
          I +  V+ A  ES    +C
Sbjct: 61 IQVAQVIDAVNESVDATKC 79


>gi|325266631|ref|ZP_08133308.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           denitrificans ATCC 33394]
 gi|324982074|gb|EGC17709.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           denitrificans ATCC 33394]
          Length = 148

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  +   +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALNAQNNAVKLNSISERQQISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALN 116
             GG  L R A +I I  ++ A E+      C    K +C     C    L   L   +N
Sbjct: 61  PGGGYILGRDAGEINIAQIIAAAEDELDATLCKG--KANCQSGAPCLTHNLWENLNHTIN 118

Query: 117 AFFDVLT 123
           A+   +T
Sbjct: 119 AYLSSVT 125


>gi|296124045|ref|YP_003631823.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
           3776]
 gi|296016385|gb|ADG69624.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
           DSM 3776]
          Length = 147

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++K  +Y +R +   A   +      ++A    +   +L  +LQ L +AGIV++  G  G
Sbjct: 2   ISKTAEYALRTVACLASAREGIVLADELATRTQVPRRYLNTVLQDLGRAGIVKSKSGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPL 101
           G  L     +++ILDV+ A      + +C     SH   CPL
Sbjct: 62  GHSLLVDPKELSILDVINAVSPLERIRQCPLGLPSHTELCPL 103


>gi|126726563|ref|ZP_01742404.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126704426|gb|EBA03518.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           +S I+    IS  +L ++   L +AG+VE+VRG  GG RL +   +I + D++ A +E+
Sbjct: 55  LSDISRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLAKAPAEIRVSDILGAVDET 113


>gi|90406923|ref|ZP_01215114.1| Rrf2 family protein [Psychromonas sp. CNPT3]
 gi|90311965|gb|EAS40059.1| Rrf2 family protein [Psychromonas sp. CNPT3]
          Length = 158

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT +  Y +  ++  A+  HN  P  ++ I+    IS  +L ++   L K  +V +VR
Sbjct: 1   MKLTSKGRYAVTAMLDVALKEHNG-PVPLADISMRQGISLSYLEQLFSKLRKNELVCSVR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL--- 115
           G  GG +L +   +I++  ++ A  ES  V +C  S K  C   G   LT  L + L   
Sbjct: 60  GPGGGYKLGKLRSEISVAMIIAAVNESVDVRKC--SGKEGCQEHGVKCLTHSLWEQLSLR 117

Query: 116 -NAFFDVLT 123
            + F D +T
Sbjct: 118 ISTFLDGIT 126


>gi|226356686|ref|YP_002786426.1| Rrf2 family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226318676|gb|ACO46672.1| putative transcriptional regulator, Rrf2 family [Deinococcus
           deserti VCD115]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +I++A  +   +L +IL  L   G+V++ +G  GG  L R    I++ +VV+A +     
Sbjct: 30  EISDATGVHRPYLVRILAALTAKGVVKSKKGIGGGYALARKPQLISLCEVVRAIDGPVAP 89

Query: 89  AECFA-SHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECLV 131
             C + +    C     C    S+ R+  +A   VL ++S+  LV
Sbjct: 90  LSCISLNWHEPCVEEDRCHARASIYRRMRDAMLGVLQEFSVADLV 134


>gi|294677420|ref|YP_003578035.1| FeS assembly cluster transcription factor IscR [Rhodobacter
           capsulatus SB 1003]
 gi|294476240|gb|ADE85628.1| FeS assembly cluster transcription factor IscR [Rhodobacter
           capsulatus SB 1003]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A     P +++ +AE      IS  +L ++   L +AG+V +V
Sbjct: 1   MKLSTKGRYAMVALVDLATVG--PGQMTSLAEISKRQDISLPYLEQLFVRLRRAGLVASV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L +   +I I +V +A +E+       A          +  L + L ++L+A
Sbjct: 59  RGPGGGYKLAKTPAEIRISEVFEAVDETVSALHVGAGASGGISGSRAQSLANRLWESLSA 118

Query: 118 -FFDVLTQYSIECLVRN 133
             F  L Q ++E +V+N
Sbjct: 119 QVFVFLHQTTLEDVVKN 135


>gi|163736408|ref|ZP_02143827.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
          gallaeciensis BS107]
 gi|163741057|ref|ZP_02148449.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Phaeobacter gallaeciensis 2.10]
 gi|161385410|gb|EDQ09787.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Phaeobacter gallaeciensis 2.10]
 gi|161390278|gb|EDQ14628.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
          gallaeciensis BS107]
          Length = 152

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  I++   IS  +L ++   L ++G+V +VRG  GG RL  P   I ++DV+ A +E+
Sbjct: 28 LGDISKRQDISLPYLEQLFVKLRRSGLVVSVRGPGGGYRLAHPPSDIRVVDVLSAVDET 86


>gi|294053610|ref|YP_003547268.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293612943|gb|ADE53098.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 150

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 5   KRTDYGIRVLMYCA-IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           K     I  + Y A +++    +IS  +IAE   + +  + K+L  L +AG+V+  RG  
Sbjct: 6   KTAQNAISAMSYLAKVYDGGETKISSKEIAEERQLPQTLVAKLLVTLSQAGLVDGARGPN 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC-----FASHKIDCPLVG-----SCGLTSVL 111
           GG  L +    I + D+V+  E+    A C     +  +   CPL          L S L
Sbjct: 66  GGYWLAKAPKDIVLYDIVRLFEKGGSGAMCPFGPDWCGNGEPCPLHDQLVELDGNLMSFL 125

Query: 112 RKALNAFFDVLTQ 124
            +   A F++ +Q
Sbjct: 126 ERTSLAVFEIGSQ 138


>gi|313497210|gb|ADR58576.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 153

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R  +
Sbjct: 3  AMLDLALHAKNGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGME 62

Query: 72 QITILDVVKATEESFFVAEC 91
           I +  V+ A  ES     C
Sbjct: 63 TIQVAQVIDAVNESVDATRC 82


>gi|312870588|ref|ZP_07730703.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
          PB013-T2-3]
 gi|311093903|gb|EFQ52232.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
          PB013-T2-3]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R    I +L +  I+    P     IA +   S + + +++  L K G++ETV G
Sbjct: 1  MRVSTRLSDSIHILAFLQIYRGKVPLTSENIAGSVETSPVVVRRLMSALRKGGLIETVLG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
               RL RPAD+I++ D+  A E
Sbjct: 61 F-ADPRLARPADEISLYDIYLAVE 83


>gi|313115924|ref|ZP_07801351.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621688|gb|EFQ05216.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 146

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +TK TDY +R+L    + +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 4  MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L    D  ++ D++    E   +  C 
Sbjct: 62 LGGCELSCDLDATSLYDLMVVVGERGILCACM 93


>gi|291562340|emb|CBL41156.1| Predicted transcriptional regulator [butyrate-producing bacterium
          SS3/4]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +TK TDY +R+L    + +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 1  MIITKETDYALRILR--VLLDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
           GG  L    D  ++ D++    E   +  C 
Sbjct: 59 LGGCALSCDLDATSLYDLMGVVGERGILCACM 90


>gi|119385536|ref|YP_916592.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119375303|gb|ABL70896.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 3   LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++++T Y I+ LM  A           I +IA+     + FL  I+  L  AG V + RG
Sbjct: 13  ISQKTKYAIKALMALADEVAAGGNALTIEEIAQRSGAPKRFLEHIMLELRNAGYVGSRRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   +I+I ++++  +       C +        DC    +C L  +  +  
Sbjct: 73  RAGGYVLIKRPKEISIGELLRQVDGPIAPLPCLSRRSYQRCEDCTDEATCRLRRMFGQVF 132

Query: 116 NAFFDVLTQYSIECLV 131
            ++  ++   ++E LV
Sbjct: 133 WSYLLLIESLTLEDLV 148


>gi|322835180|ref|YP_004215206.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170381|gb|ADW76079.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA++IT+ D+
Sbjct: 41 FIRKLMVPLTQHGIIVSTLGRTGSITLGRPAEEITLRDI 79


>gi|312131867|ref|YP_003999207.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
           byssophila DSM 17132]
 gi|311908413|gb|ADQ18854.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
           byssophila DSM 17132]
          Length = 136

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA + CI+ + + + L  L +AG++ + +G+ GG +L +  ++I++ +V  A + S  + 
Sbjct: 29  IAGSICINPVMVRRELSSLNEAGLIYSRKGKDGGSKLSKKPEEISLGEVYLAVKNSEILG 88

Query: 90  ECFASHKIDCPLVGS 104
           +       +CP VGS
Sbjct: 89  KKNKDTNSNCP-VGS 102


>gi|146317858|ref|YP_001197570.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145688664|gb|ABP89170.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
          Length = 105

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 35  CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
            +SE+F  K    L +AG+VE  RG  GG RL +  DQIT+L V +A E      + FA 
Sbjct: 32  SLSEIFCPK----LKEAGLVEVARGI-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAF 86

Query: 95  HKIDCP 100
           H+   P
Sbjct: 87  HEQPNP 92


>gi|89096880|ref|ZP_01169771.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088260|gb|EAR67370.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          FL KIL+ LVK G+V+   GR GG  L +P + I + DV
Sbjct: 46 FLRKILRNLVKEGLVQAKEGRDGGYFLAKPPEDIRLSDV 84


>gi|153812075|ref|ZP_01964743.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
 gi|149831730|gb|EDM86816.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
          Length = 149

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  + V++  AI+ +     + IAE+   +  F+ +++  L KA ++ +V G    
Sbjct: 5  TKLSD-TVHVMVLIAINQEKSLSSASIAESVHTNPGFVRQLMLKLKKAELMTSVAGH-AR 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L +PA+QIT+LD+ KA E
Sbjct: 63 PSLSKPAEQITLLDIYKAVE 82


>gi|107103686|ref|ZP_01367604.1| hypothetical protein PaerPA_01004757 [Pseudomonas aeruginosa
          PACS2]
          Length = 133

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          + VL++ A H + P     I +    + + + + +  L   G V + +G RGG RL +P 
Sbjct: 2  LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 60

Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99
            IT+LD+ +A   S   A   ++   +C
Sbjct: 61 ADITLLDIHQALGASSIFAIGLSTDHPEC 89


>gi|46201015|ref|ZP_00207932.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + ++L  L KAG+V + RG  GG  L    ++I++LD+ +A +E    A
Sbjct: 30  IAGSVNTNPVVVRRLLSALAKAGLVHSTRGSAGGSVLALGPERISLLDIHRAVDEEEEPA 89

Query: 90  ECFASHKIDCPL 101
                   DCP+
Sbjct: 90  LHNQPPNPDCPV 101


>gi|315659054|ref|ZP_07911921.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
 gi|315496178|gb|EFU84506.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
          Length = 140

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 38/69 (55%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + VL + A H D     +++AE  C++ + L +++  L  +  ++T+RG+ GG +  + 
Sbjct: 8  AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 67

Query: 70 ADQITILDV 78
             IT+ ++
Sbjct: 68 TAAITLAEL 76


>gi|317047988|ref|YP_004115636.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949605|gb|ADU69080.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA +IT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPASEITLRDI 79


>gi|30795085|ref|NP_851535.1| hypothetical protein pSLA2-L_p113 [Streptomyces rochei]
 gi|30698458|dbj|BAC76571.1| hypothetical protein [Streptomyces rochei]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +   + + + ++L  +  AG+V + RG   G  L RP + IT+ DV +A E S   A
Sbjct: 33  VAGSVNTNPVVIRRLLGRMRDAGLVHSRRGADAGWVLARPLEDITLRDVYEAIEPSPLFA 92

Query: 90  ECFASHKIDCPLVGSCGLTSVLR 112
              +   + CP VGS G+   +R
Sbjct: 93  MHRSDPNLGCP-VGS-GIQPAMR 113


>gi|37520366|ref|NP_923743.1| hypothetical protein glr0797 [Gloeobacter violaceus PCC 7421]
 gi|35211359|dbj|BAC88738.1| glr0797 [Gloeobacter violaceus PCC 7421]
          Length = 140

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P +I +IA+   I + +L ++L  L + G+V++ RG RGG  L R    I +L++V+  E
Sbjct: 26 PMQIKEIAQCQSIPDRYLEQLLADLRRHGLVKSQRGARGGYLLAREPFAIHLLEIVQCIE 85


>gi|126736518|ref|ZP_01752259.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
 gi|126714056|gb|EBA10926.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
          Length = 124

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + IA+    + + + ++L  L +AG++ + +G  GG RL R A  IT+ DV  A +E   
Sbjct: 12  ADIADHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLARAAQDITLADVYLALDERLV 71

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
                +S   D P   +C +   L+  + A  + + +  IE L +
Sbjct: 72  A----SSPNDDVP---TCVVEHRLQNKITAVMEEIERSLIERLSK 109


>gi|325102879|ref|YP_004272533.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324971727|gb|ADY50711.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 145

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R + + A       +  I +IA+     E FL KILQ L + GIV + +G 
Sbjct: 4   FSKTCEYAMRAVFFIAYKTSEDKKVGIKEIAQGINSPEHFLAKILQDLSRKGIVLSAKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     +  + ++V+A +       C       C     C +    +K  N    
Sbjct: 64  NGGFYMDSITLKQPLSNIVEAIDGDKIFVGCGLGLNY-CSESNPCPIHHEFKKIRNDIIK 122

Query: 121 VLTQYSI----ECLVRNRSSIKK 139
           +L   +I    E L+   S++KK
Sbjct: 123 MLKNTTIEDFNEDLILGNSTLKK 145


>gi|294499976|ref|YP_003563676.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294349913|gb|ADE70242.1| transcriptional regulator, putative [Bacillus megaterium QM B1551]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 1   MHL---TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MH+    +++ Y I +L +       P  +  I+     S  +  K+L+ LV A ++ +V
Sbjct: 1   MHMKTGVEQSVYAILLLTFLPEKAVLPGDV--ISTQLGGSPTYFQKLLRKLVSADLLASV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
            G +GG RL +  ++I I DV  A E  +S + +       ++      C L+ ++ +A 
Sbjct: 59  PGSKGGFRLKKTPEEIRIYDVYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +++  +L + +I  L   
Sbjct: 119 SSWQSILKRQTIATLTNE 136


>gi|289551542|ref|YP_003472446.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
          HKU09-01]
 gi|289181073|gb|ADC88318.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
          HKU09-01]
          Length = 141

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 38/69 (55%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + VL + A H D     +++AE  C++ + L +++  L  +  ++T+RG+ GG +  + 
Sbjct: 9  AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 68

Query: 70 ADQITILDV 78
             IT+ ++
Sbjct: 69 TAAITLAEL 77


>gi|226195510|ref|ZP_03791098.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei Pakistan 9]
 gi|225932470|gb|EEH28469.1| iron-sulfur cluster assembly transcription factor IscR
          [Burkholderia pseudomallei Pakistan 9]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          ++ I++   IS  +L ++   L +  IVE+VRG  GG  L R A  +T+ D++ A +E  
Sbjct: 3  LAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVDEPL 62

Query: 87 FVAEC 91
             +C
Sbjct: 63 DATQC 67


>gi|253580214|ref|ZP_04857481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848733|gb|EES76696.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 145

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  I +L++ A+ ++     ++IAE+   +  ++ +++  L  AGIV   +G    
Sbjct: 5  TKLSD-TIHILIFIALGDEEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L +PAD+I + D+ +A E
Sbjct: 63 AALAKPADKINMYDIYRAVE 82


>gi|56964902|ref|YP_176633.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911145|dbj|BAD65672.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 169

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFA 93
           +S  +L KI++ LV + ++ +V G  GG  L +  + IT+LD+++A E    FF  E   
Sbjct: 37  VSPSYLKKIMRKLVISKLITSVPGNSGGFALAKSPEAITMLDILEAIEGTSPFFQTEGLI 96

Query: 94  SH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
            +   +I     GS  L ++  +A   +   L + ++
Sbjct: 97  QYVFPEIPAAEAGSKRLEAIFLEAQEQYMASLAKTTL 133


>gi|84686886|ref|ZP_01014770.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665083|gb|EAQ11563.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 143

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           ++ ++E   IS  +L ++   L +A +VE+VRG  GG  L RP+ +I + +++ A +E+ 
Sbjct: 18  LTDLSERQKISLPYLEQLFVKLRRAELVESVRGPGGGYMLARPSSEIRVAEILAAVDETV 77

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-LTQYSIECLVRN 133
                 A          +  +T+ L + L+A   V L Q  +  +V N
Sbjct: 78  SAMHTGAGASGGKSGTRAQSMTNRLWEGLSAHVYVFLHQTRLSDVVHN 125


>gi|115360049|ref|YP_777187.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
          ambifaria AMMD]
 gi|115285337|gb|ABI90853.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          ambifaria AMMD]
          Length = 146

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  IH D    P     IA     + + + ++L  L  +G V++ +G  G
Sbjct: 2  RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDSGYVQSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L    D IT+LDV +A  E    ++  +    +C
Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98


>gi|329923736|ref|ZP_08279131.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
 gi|328941102|gb|EGG37404.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
          Length = 120

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          + KI+  L + GIV  V G  GG  L +PA QIT L+V++  E    + EC
Sbjct: 1  MSKIMSKLRQDGIVRAVPGVNGGYELAKPARQITFLEVIQVIEGRQQLFEC 51


>gi|153814508|ref|ZP_01967176.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
 gi|145848002|gb|EDK24920.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
          Length = 95

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCG 106
           L KAGIV +VRG  GG  L +  + I++ DV++A E S    +C        C +  SC 
Sbjct: 2   LKKAGIVRSVRGAGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCV 61

Query: 107 LTSVLRKALNAFFDVLTQYSIECLVR 132
              V +K  ++    + +  ++ LV+
Sbjct: 62  TKYVWKKINDSINQTVDEIKLDQLVK 87


>gi|89096273|ref|ZP_01169166.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
 gi|89089127|gb|EAR68235.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
          Length = 138

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          I  L Y A+  D  +    I+++  +  + + K+L  L + G +++  G  GG    R  
Sbjct: 9  IHSLAYLALQLDRMSTSEAISKSAGVHPVRIRKVLSLLKRNGFIKSKEGTGGGFIFAREL 68

Query: 71 DQITILDVVKATEESFFVAECFASHK 96
          D++++ D+ K T E     +C  S++
Sbjct: 69 DEVSLWDIYKITSEGALQPKCPESNE 94


>gi|300932585|ref|ZP_07147841.1| transcriptional regulator, BadM/Rrf2 family protein
           [Corynebacterium resistens DSM 45100]
          Length = 133

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           S IA      +  + K++  L + G+V + RGR GG+ L   A    +  +++  E    
Sbjct: 23  SSIAHNIGAPQTHVAKVVSKLAELGMVNSTRGRTGGIVLTPEARTKKLGTLMQELE---- 78

Query: 88  VAECFASHKI--DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
                +++++   CP    C L  VL+ A   FFD L + +I  +V
Sbjct: 79  -GPRLSNYRVHDPCPFDPECQLHGVLQLAAQQFFDHLDKTTINDIV 123


>gi|49076390|gb|AAT49554.1| PA4169 [synthetic construct]
          Length = 143

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          + VL + A H + P     I +    + + + + +  L   G V + +G RGG RL +P 
Sbjct: 11 LHVLTHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 69

Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99
            IT+LD+ +A   S   A   ++   +C
Sbjct: 70 ADITLLDIHQALGASSIFAIGLSTDHPEC 98


>gi|28869602|ref|NP_792221.1| hypothetical protein PSPTO_2406 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852844|gb|AAO55916.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018967|gb|EGH99023.1| hypothetical protein PLA106_23258 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 148

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114
            GG  L RPA++I +LDV +A E++    E F+SH++     C + G+    L   L +A
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRVAPCEQCAVGGNILEALAPTLGRA 116

Query: 115 LNAFFDVLTQYSI 127
             A  D L + ++
Sbjct: 117 RTALEDELAKVTV 129


>gi|222106516|ref|YP_002547307.1| hypothetical protein Avi_5475 [Agrobacterium vitis S4]
 gi|221737695|gb|ACM38591.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 155

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       IS+IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTILLELRNGGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L  PA +I I   ++  +       C +        DC    +C +   + +  +A
Sbjct: 62  GGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDDCADPVNCQVRRSMTQVRDA 121

Query: 118 FFDVLTQYSIECLVRNRS 135
              +L   ++E  V   S
Sbjct: 122 IAAILDNMTLEQFVATPS 139


>gi|146299258|ref|YP_001193849.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146153676|gb|ABQ04530.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 136

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L Y A   N+ P +I++IA++  IS  FL  IL  L  +G +   +G+ 
Sbjct: 2   LSKKTKYGIKALTYLARRENNEPVQIAEIAKSEHISIKFLESILLLLRNSGFLGAKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKALN 116
           GG  L +    I++  V +  E    +  C ASH       DC    +C    ++ +  +
Sbjct: 62  GGYYLIKDPKDISMAKVYRILEGPIALLPC-ASHNFYEKCDDCDDESTCAARRLMTEVRD 120

Query: 117 AFFDVLTQYSI 127
               +L   S+
Sbjct: 121 NTLKILESNSL 131


>gi|325130469|gb|EGC53229.1| rrf2 transcriptional regulator family protein [Neisseria
           meningitidis OX99.30304]
          Length = 130

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           ++S I+E   IS  +L ++   L +AG+VE++RG  GG  L  PA +I I  ++ A E+ 
Sbjct: 9   KLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDR 68

Query: 86  FFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127
               +C +  K +C     C    L   L K +N +   +T  SI
Sbjct: 69  LDATQCGS--KANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSI 111


>gi|307323805|ref|ZP_07603014.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890254|gb|EFN21231.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 143

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L + G+V++ RG   G  L R    IT+LDV +A E     
Sbjct: 32  QIATSVNTNPVVIRRLLSELRRTGLVDSRRGAGAGWTLSRDLAAITLLDVYEAVEPGPVF 91

Query: 89  A--------ECFASHKIDCPLVGSCG-LTSVLRKAL--NAFFDVL 122
           A        EC   H I   L    G + + LR+ L      DVL
Sbjct: 92  ALHRSAPDPECVVGHGIGPALTAVYGEIEATLRRELARTTLEDVL 136


>gi|319653880|ref|ZP_08007974.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
 gi|317394416|gb|EFV75160.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
          Length = 137

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 40/86 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          I  L Y A+  D  +    I+E+  +  + + K+L  L K G +++  G  GG    R  
Sbjct: 9  IHSLTYLALQLDRMSTSDAISESAGVHPVRIRKVLSLLKKHGFIKSKEGTGGGFIFARDL 68

Query: 71 DQITILDVVKATEESFFVAECFASHK 96
           ++ + D+ K T E     +C  S++
Sbjct: 69 SEVNLWDIYKITSEGALQPKCPDSNE 94


>gi|254462391|ref|ZP_05075807.1| Rrf2 family protein [Rhodobacterales bacterium HTCC2083]
 gi|206678980|gb|EDZ43467.1| Rrf2 family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 69

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 83  EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           E    + EC       C L  SCGLTS LR A +AF+  L+  ++  L +N + + ++ 
Sbjct: 5   ESQTELVECLRPDGGSCVLAPSCGLTSALRVAQDAFYTSLSTMTLADLTKNNAPMARLL 63


>gi|149196442|ref|ZP_01873497.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
 gi|149140703|gb|EDM29101.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
          Length = 147

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELF------LFKILQPLVKAGIVET 56
           L K+ +Y I  L +  + N     +S + E C   EL+        + +Q +  AGI+++
Sbjct: 4   LNKKVEYAIIALQH--MKNVNEGEMSTVKEIC---ELYGAPFDVTSRAMQKMASAGILKS 58

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT---SVLRK 113
           ++G  GG  +     ++ +LD++++      +A C       C ++ +C +    + L +
Sbjct: 59  IKGAHGGYLIQENLGELKLLDLIESISGDISLANCVID-ACKCDMISTCNIVDPITRLNE 117

Query: 114 ALNAFFDVLT 123
            L  FF  +T
Sbjct: 118 LLRKFFAEMT 127


>gi|322419855|ref|YP_004199078.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320126242|gb|ADW13802.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 153

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    I + FL  IL  L  +GI+++ +GR 
Sbjct: 2   ISKKTKYGLKALIYLARKYDQGPILIADLAREERIPKKFLENILLSLKNSGILQSRKGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117
           GG  L RP D+IT    V+  E       C +        +C    +CG+  V++   + 
Sbjct: 62  GGYYLGRPPDKITFGQAVRVMEGPLAPVPCVSEMAYAKCTECGDELTCGIRLVMKDVRDE 121

Query: 118 FFDVL 122
              +L
Sbjct: 122 MARIL 126


>gi|269120156|ref|YP_003308333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Sebaldella termitidis ATCC 33386]
 gi|268614034|gb|ACZ08402.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella
          termitidis ATCC 33386]
          Length = 144

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +  YG+ ++M  A  N   +R   +  IA +  +SE +L +I+Q L K  ++ + 
Sbjct: 1  MRISTKGRYGLYLMMELA-GNCTKSRCISLKNIAASQGVSEKYLEQIVQILNKEKLLIST 59

Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          RG  GG +L     +I++  +++  E++  + EC
Sbjct: 60 RGAYGGYKLASKPSEISVGTILRCLEKTIDIPEC 93


>gi|332637437|ref|ZP_08416300.1| transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 162

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          V+M   +  D   +  +++    +S  +L KI + L  AG++ +   + GG  L +  ++
Sbjct: 14 VVMLAQLPEDETLKSQEMSARMQVSHSYLLKIAKKLKDAGVITSSASKNGGYSLAKKPEE 73

Query: 73 ITILDVVKATEESFFVAECF 92
          I+ LD+  A E      E F
Sbjct: 74 ISFLDLFDAVESGEAFHENF 93


>gi|330958789|gb|EGH59049.1| hypothetical protein PMA4326_09575 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 148

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114
            GG  L RPA++I +LDV +A E++    E F+SH++     C + G+    L   L +A
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRVAPCEKCAVGGNILEALAPTLVRA 116

Query: 115 LNAFFDVLTQYSI 127
            +A  D L + ++
Sbjct: 117 RSALEDELAKVTV 129


>gi|329768830|ref|ZP_08260259.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
 gi|328838223|gb|EGF87836.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
          Length = 167

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 1   MHLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MHLTK T+  I   V++Y    + Y N   +I++   IS  +L KI++ LV   +V+   
Sbjct: 1   MHLTKSTEQAICIMVMLYLQDRHIYLNS-KEISKRLNISPTYLKKIMRKLVVHNLVKANT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK-- 113
           G  GG +  R    +T+ DV  A     E F +   + S   +  L      +  LRK  
Sbjct: 60  GVGGGYK-YRSNKTVTLYDVYVALNGEVEVFVLKTDYVSKIFEGALAVDKRYSEYLRKVN 118

Query: 114 ALN-AFFDVLTQYSIECLVRN 133
            +N +  + L Q +IE +V +
Sbjct: 119 TINHSIKEALEQITIEEIVED 139


>gi|58337328|ref|YP_193913.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
 gi|58254645|gb|AAV42882.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
          Length = 153

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + K  +    VL+  A+   + P +   +++   +S+ +L KIL  L    ++     
Sbjct: 1   MKINKSVEQATYVLLILALQKKHTPLKSRVLSKTMGVSDSYLKKILMMLKHNELITASAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           ++ G +L RP D+I++ DV+ A E      E   +A      + D        + + L+ 
Sbjct: 61  KKVGYQLARPIDEISLKDVLYALELNHNQIEFNHLANNIFDDQ-DHVEESENKIINTLQA 119

Query: 114 ALNAFFDVLTQYSIECLVRN 133
            L++F+D L +  +  L+++
Sbjct: 120 GLSSFYDELDELKLSDLLKD 139


>gi|258591782|emb|CBE68083.1| Transcriptional regulator, BadM/Rrf2 family [NC10 bacterium 'Dutch
           sediment']
          Length = 136

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 18  AIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           A+H +  P +I  IA+   +   +L +IL  L +AG +E+ RG  GG  L +   +IT+ 
Sbjct: 5   ALHYEQGPIQIEDIAKRQHLPARYLEQILLSLKRAGFLESKRGVSGGYYLAKHPREITVG 64

Query: 77  DVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            +++A E       C  S + + C     C L  +  +  +A   ++ + S+E L
Sbjct: 65  AIIRAMEGPIVPIFCVGSGQREICIEEPQCCLRDIWAEVRDAVSHIVDRTSLEDL 119


>gi|149180765|ref|ZP_01859268.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148851555|gb|EDL65702.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 206

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 10  GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            I+ L+  A H    P+ +  +AE      +FL KIL+ LVK  +++   GR GG  L +
Sbjct: 83  AIQALLVLANHEGLCPSGV--LAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGYYLVK 140

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAFF-DVLTQY 125
             + I + DV  A     F    F     +C    +C   S+  LR  + ++  + L Q 
Sbjct: 141 NPEDIKLSDVYNAMRSETFSKGFFDVESKEC--FAACTRDSLFELRDEMESWIVNGLEQK 198

Query: 126 SIECLVRN 133
           +I+ L++ 
Sbjct: 199 TIKDLMKQ 206


>gi|16264868|ref|NP_437660.1| hypothetical protein SM_b20994 [Sinorhizobium meliloti 1021]
 gi|307307992|ref|ZP_07587710.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|15141007|emb|CAC49520.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306901396|gb|EFN32000.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 177

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+  YG++ ++  A +       I++IA    + + FL  I+  L  AG + + +G
Sbjct: 26  LMLTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKI--DCPLVGSCGLTSVLRKAL 115
             GG  L RPA +I +  V++  +       C +  ++++  DC    +C +   +    
Sbjct: 86  PGGGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVR 145

Query: 116 NAFFDVLTQYSI 127
           +A  D+L   ++
Sbjct: 146 DAVADILDNMTL 157


>gi|295705354|ref|YP_003598429.1| transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294803013|gb|ADF40079.1| transcriptional regulator, putative [Bacillus megaterium DSM 319]
          Length = 159

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 1   MHL---TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MH+    +++ Y I +L +       P  +  I+     S  +  K+L+ LV A ++ +V
Sbjct: 1   MHMKTGVEQSVYAILLLTFLPEKAVLPGDV--ISTQLGGSPTYFQKLLRKLVSADLLASV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
            G +GG RL +  ++I I D+  A E  +S + +       ++      C L+ ++ +A 
Sbjct: 59  PGSKGGFRLKKTPEEIRIYDIYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +++  +L + +I  L   
Sbjct: 119 SSWQSILKRQTIATLTNE 136


>gi|297624973|ref|YP_003706407.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297166153|gb|ADI15864.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 165

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+    Y  + L +       P R      I+EA  ++  +L +IL  L   GI+ + 
Sbjct: 11  MRLSTTDIYAFQALGFLGTQP--PGRWVGSDTISEATGVARPYLVRILAQLTAKGIIVSK 68

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC-GLTSVLRKAL 115
           +G  GG  L R A  I + DV++A +       C + +  + C     C   ++V  +  
Sbjct: 69  KGAGGGYALVREAHLINLRDVMRAIDGPVAPLSCVSLNWHVPCVEEARCHARSAVWERVR 128

Query: 116 NAFFDVLTQYSIECLVRN 133
           +A    L++ S+  L  +
Sbjct: 129 DALLTALSEVSVADLAAD 146


>gi|15891276|ref|NP_356948.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
          C58]
 gi|15159651|gb|AAK89733.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
          C58]
          Length = 173

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/80 (21%), Positives = 43/80 (53%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          MHL ++T+    +L  CA        + ++A+    ++   ++++  L + G++++ RG 
Sbjct: 1  MHLKRQTEIAFGILAVCARQEGEIISVQKVAQEIGATKDHTYQVVALLARNGLLQSERGP 60

Query: 61 RGGVRLCRPADQITILDVVK 80
           GG++L R    + + +V++
Sbjct: 61 GGGLKLARDPRSVKLAEVLR 80


>gi|329298886|ref|ZP_08256222.1| BadM/Rrf2 family transcriptional regulator [Plautia stali
          symbiont]
          Length = 140

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA +IT+ D+
Sbjct: 20 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDI 58


>gi|150376652|ref|YP_001313248.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031199|gb|ABR63315.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 179

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + LTK+  YG++ ++  A +       I++IA    + + FL  I+  L  AG + + +G
Sbjct: 25  LMLTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKG 84

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             GG  L RPA +I +  V++  +       C
Sbjct: 85  PGGGYALARPASEIRVGQVIRTLDGPLAPIRC 116


>gi|213971257|ref|ZP_03399374.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383893|ref|ZP_07232311.1| hypothetical protein PsyrptM_14720 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063596|ref|ZP_07255137.1| hypothetical protein PsyrptK_26743 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131005|ref|ZP_07256995.1| hypothetical protein PsyrptN_06391 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924010|gb|EEB57588.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 148

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSC--GLTSVLRKA 114
            GG  L RPA++I +LDV +A E++    E F+SH++     C + G+    L   L +A
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDT----ELFSSHRMAPCEQCAVGGNILEALAPTLGRA 116

Query: 115 LNAFFDVLTQYSI 127
             A  D L + ++
Sbjct: 117 RTALEDELAKVTV 129


>gi|332765883|gb|EGJ96094.1| iscR transcriptional regulator IscR transcriptional dual
          regulator [Shigella flexneri 2930-71]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A  I + +V+ A +
Sbjct: 12 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 71

Query: 84 ES 85
          ES
Sbjct: 72 ES 73


>gi|312973225|ref|ZP_07787397.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|310331820|gb|EFP99055.1| rrf2 family protein [Escherichia coli 1827-70]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A  I + +V+ A +
Sbjct: 12 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 71

Query: 84 ES 85
          ES
Sbjct: 72 ES 73


>gi|149202529|ref|ZP_01879501.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
          sp. TM1035]
 gi|149143811|gb|EDM31845.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
          sp. TM1035]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +T +T Y ++ LM  A          RI  IA      + FL  IL  L +AG++ + RG
Sbjct: 2  ITHKTKYALKALMVLADEKAGEGVALRIEDIAARSGAPKRFLEHILLDLKRAGLIGSRRG 61

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          R GG  + +   ++++ +V++  +       C +
Sbjct: 62 RNGGYEMIKEPRRVSLAEVLRLIDGPMAPLPCLS 95


>gi|256421070|ref|YP_003121723.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
           DSM 2588]
 gi|256035978|gb|ACU59522.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
           DSM 2588]
          Length = 142

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y    L++ A + D  P  IS+IA+   IS  FL  IL  L  AGI+ + +G+ 
Sbjct: 2   LSKKTQYAFHALIHLAENADKGPILISEIAQEKSISIKFLENILLELKNAGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  +++  + +  +  C + +  +    C     CGL  V+ K  +A
Sbjct: 62  GGYYLLKTPKEIPLAKIIRLLDGAIALLPCVSLNYYEKCENCRDEAVCGLNDVMGKVRDA 121

Query: 118 FFDVLTQYSI-ECLVRNRS 135
              +L   ++ + L RN S
Sbjct: 122 TLKILETKTLKDILTRNVS 140


>gi|320175095|gb|EFW50208.1| Iron-sulfur cluster regulator IscR [Shigella dysenteriae CDC
          74-1112]
          Length = 152

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A  I + +V+ A +
Sbjct: 15 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 74

Query: 84 ES 85
          ES
Sbjct: 75 ES 76


>gi|206603887|gb|EDZ40367.1| Putative transcriptional regulator, BadM/Rrf2 family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 159

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + +AE+     + + +IL  L KAG+V + +G+ GGV L +  + I++L++ +A  E   
Sbjct: 50  AHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESV 109

Query: 88  VAECFASHKIDCPL 101
            A         CP+
Sbjct: 110 FAFNPNPPNPKCPV 123


>gi|329895576|ref|ZP_08271072.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
 gi|328922255|gb|EGG29605.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H ++ P  ++ I+    IS  +L ++   L K G+V++VRG  GG  L +  + 
Sbjct: 4   MLDLALHREHGPIPLAGISARQDISLSYLEQLFAQLRKHGLVKSVRGPGGGYYLGKSLEV 63

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAFFDVLTQYSIECLV 131
           I++ DV++A  E      C    +  C    +C LT  L   L +   D L   S+  LV
Sbjct: 64  ISVADVIEAVNEDTDATRCRG--RGSCQKGATC-LTHHLWSGLSDQIRDFLRNISLADLV 120

Query: 132 RNRSSIKKI 140
             R  I++I
Sbjct: 121 -VREEIREI 128


>gi|255326646|ref|ZP_05367722.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
 gi|255295863|gb|EET75204.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
          Length = 164

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +   +  ++ KI+  L KA I+ + RG+  G +L RP + I++LD+  A +ES  + 
Sbjct: 47  LARSVGTNASYIRKIITLLKKADILSSQRGK-PGYQLTRPVENISLLDIYLAVQESRSIN 105

Query: 90  ECFASHKI--DCPLVGSCGLTSVLRKALNAFFD 120
                H    +CP VG+  L     +A+N  F+
Sbjct: 106 LFHTHHNANEECP-VGAHIL-----QAVNPIFE 132


>gi|292488270|ref|YP_003531152.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
          CFBP1430]
 gi|292899465|ref|YP_003538834.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291199313|emb|CBJ46430.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291553699|emb|CBA20744.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
          CFBP1430]
 gi|312172409|emb|CBX80666.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
          BAA-2158]
          Length = 152

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D+
Sbjct: 41 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAQLITLCDI 79


>gi|124514978|gb|EAY56489.1| putative transcriptional regulator, BadM/Rrf2 family
           [Leptospirillum rubarum]
          Length = 159

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + +AE+     + + +IL  L KAG+V + +G+ GGV L +  + I++L++ +A  E   
Sbjct: 50  AHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESV 109

Query: 88  VAECFASHKIDCPL 101
            A         CP+
Sbjct: 110 FAFNPNPPNPKCPV 123


>gi|307313736|ref|ZP_07593354.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|306899226|gb|EFN29863.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 135

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA+    + + + + +  L + GIV +  GR GG R+ + AD+IT+  V  A +     +
Sbjct: 28  IAKMLNTNPVVVRRTMAALKEKGIVTSAGGRSGGWRIAKGADEITVEQVHDALQTGSAFS 87

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR---SSIKKIFNA 143
              +     CP+ G          A+N F D       E  +R R   ++I+ + NA
Sbjct: 88  IALSRDHSTCPVEG----------AVNTFLD-QAMADAERALRTRFAGTTIQDLANA 133


>gi|322417915|ref|YP_004197138.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320124302|gb|ADW11862.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 149

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K + + +  ++  A           IA+   IS   L KI++ LV  G+V+ VRG 
Sbjct: 1  MKLNKASLFALIAVLELASDPKQQKSTLDIADKYGISTHHLAKIMRNLVHHGLVQAVRGV 60

Query: 61 RGGVRLCRPADQITILDVV 79
           GG      A + T+LDVV
Sbjct: 61 GGGYTFSGNAKRTTLLDVV 79


>gi|254437797|ref|ZP_05051291.1| rrf2 family protein (putative transcriptional regulator)
          [Octadecabacter antarcticus 307]
 gi|198253243|gb|EDY77557.1| rrf2 family protein (putative transcriptional regulator)
          [Octadecabacter antarcticus 307]
          Length = 157

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          + +++    +S  +L ++   L +AG+VE+VRG  GG RL + A  I +++++ A +E+
Sbjct: 28 LGELSRRQGLSLPYLEQLFVKLRRAGLVESVRGPGGGYRLAKGASDIRVVEILAAVDET 86


>gi|304397746|ref|ZP_07379623.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304354918|gb|EFM19288.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 164

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA +IT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDI 79


>gi|297561597|ref|YP_003680571.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846045|gb|ADH68065.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 150

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L KAG+ ++ RG   G  L R    IT+LDV +A E     
Sbjct: 39  QIATSVNTNPVVIRRLLAKLNKAGLADSRRGAGAGWMLARDLAAITLLDVYQAIEPGPVF 98

Query: 89  A--------ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           A        EC   H I         +T+V      A    L + ++E ++R+
Sbjct: 99  ALHRATPDPECVVGHGI------GPAMTAVYDGVEAALRGELAKTTLEDVLRD 145


>gi|261855901|ref|YP_003263184.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Halothiobacillus neapolitanus c2]
 gi|261836370|gb|ACX96137.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
          neapolitanus c2]
          Length = 150

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M LT +  + +  L++ A  ++    +S  +I+    +S  +L ++   + +A +V   R
Sbjct: 1  MRLTTKCRHAVTALIHLANRSNEQTTVSLAEISTIQGVSISYLEQLFSKMRQADLVIGTR 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEE 84
          G  GG RL RP +QIT+  +  A ++
Sbjct: 61 GPGGGYRLNRPPEQITVAHIADAIDD 86


>gi|225028923|ref|ZP_03718115.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
 gi|224953762|gb|EEG34971.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
          Length = 140

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 9   YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           Y +RV++  A H N+    +  IA+   IS+ +L  IL+ LVK  +++ +RG+ GG +L 
Sbjct: 8   YALRVMLDLAEHGNEGYIPLKDIAKRQAISDKYLESILKSLVKQKMLKGLRGKGGGYQLT 67

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           R   + ++ ++++  E +     C      DCP    C    + +K  +   D     ++
Sbjct: 68  RTPAEYSVGEILEVAEGTLAPVACLMDDAEDCPRANQCRTLPMWKKFDSLVHDFFYNITL 127

Query: 128 ECLVRN 133
           E ++ +
Sbjct: 128 EQILED 133


>gi|259908456|ref|YP_002648812.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
 gi|224964078|emb|CAX55584.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
          Length = 143

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D+
Sbjct: 32 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCDI 70


>gi|21221109|ref|NP_626888.1| hypothetical protein SCO2652 [Streptomyces coelicolor A3(2)]
 gi|6900951|emb|CAB71827.1| hypothetical protein SC8E4A.22 [Streptomyces coelicolor A3(2)]
          Length = 144

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L ++G+VE+ RG   G  L R    +T+LDV +A E     
Sbjct: 32  QIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90

Query: 89  AECFASHKI--DCPLVGSCGLTSVLRKALNAFFDV----LTQYSIECLVRN 133
              FA H+   D   V   G+   +R       +     L + ++E ++RN
Sbjct: 91  ---FAMHRTTPDQGCVVGHGIQPAMRDVYEGIEETVRHELARVTLEDVLRN 138


>gi|283478404|emb|CAY74320.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
          12163]
 gi|310767659|gb|ADP12609.1| HTH-type transcriptional regulator iscR [Erwinia sp. Ejp617]
          Length = 152

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D+
Sbjct: 41 FVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCDI 79


>gi|315185408|gb|EFU19180.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
          thermophila DSM 6578]
          Length = 145

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
          ++A +  + E  L KILQ L +AG++  V+G  GG  L R   ++TI +V +A +E
Sbjct: 39 ELASSTGLPEARLRKILQRLGRAGVLRAVQGAHGGYVLERSLSELTIGEVARALDE 94


>gi|297163402|gb|ADI13114.1| hypothetical protein SBI_09996 [Streptomyces bingchenggensis
          BCW-1]
          Length = 144

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
          QIA +   + + + ++L  L +AG+VE+ RG   G  L R    +T+LDV +A E     
Sbjct: 32 QIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSLARELGSMTLLDVYEAVEPGPL- 90

Query: 89 AECFASHK 96
             FA H+
Sbjct: 91 ---FAMHR 95


>gi|170736329|ref|YP_001777589.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818517|gb|ACA93099.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
          Length = 137

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 14  LMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +++  IH D    P     IA   C + + + ++L  L   G V++ +G  GG  L    
Sbjct: 1   MLHALIHMDQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGGGWALSVAL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128
           D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +      + ++ 
Sbjct: 61  DDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLARFGEVTLG 120

Query: 129 CLVRN 133
            L R+
Sbjct: 121 MLSRD 125


>gi|1381739|gb|AAB09668.1| HI0379 homolog [Neisseria meningitidis]
          Length = 150

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
           ++S I+E   IS  +L ++   L +AG+VE++RG  GG  L  PA +I I  ++ A E+ 
Sbjct: 27  KLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDR 86

Query: 86  FFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSI 127
               +C +  K +C     C    L   L K +N +   +T  SI
Sbjct: 87  LDATQCGS--KANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSI 129


>gi|329926661|ref|ZP_08281072.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
 gi|328939070|gb|EGG35435.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
          Length = 160

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           MH+    +  +  L+   + N  P+R       I++    S  +  K+L+ LV A ++ +
Sbjct: 1   MHMKTGVEQSVYALV---LLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTS-VLRK 113
           V G +GG RL +  + I + DV  A E  +S + +       +D     SC L S ++ +
Sbjct: 58  VPGIKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEE 117

Query: 114 ALNAFFDVLTQYSIECL 130
           A +++  VL + +I  L
Sbjct: 118 AESSWKAVLKRETIASL 134


>gi|310815010|ref|YP_003962974.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Ketogulonicigenium vulgare Y25]
 gi|308753745|gb|ADO41674.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Ketogulonicigenium vulgare Y25]
          Length = 153

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 3   LTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A          RI +IA      + FL  IL  L  AG++ ++RG
Sbjct: 2   ITQKMKYALKALMVLADAKAEGIAAMRIEEIARRSDTPKRFLEHILLELRNAGVIASIRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +  + + +  +++  +       C +        DC    +C L     +  
Sbjct: 62  RAGGYTLIKEPEAVQLSQMLRLIDGPIAPLPCLSRSAYQRCEDCSDEATCRLRRAFSEVF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
            ++  ++   ++  L+   + + ++ 
Sbjct: 122 WSYLVIIDSLTLADLIAQPAVVAQVI 147


>gi|312891725|ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
 gi|311295808|gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
          Length = 136

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +  I+ + + K L  L K  +V +  G+ GG  L +PA +I + DV +A ++S  + 
Sbjct: 29  LAGSININPVLVRKELINLRKHNLVGSKEGKNGGAYLLKPATEIRLSDVYEAVKQSPLLG 88

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142
           +   +    CP VG         + +N   D L   +   LV+  N +++++  N
Sbjct: 89  QAKNTPNPACP-VG---------RQINQHLDSLHADAERALVKQLNTTTLQQFVN 133


>gi|210617663|ref|ZP_03291694.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
 gi|210149210|gb|EEA80219.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
          Length = 147

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +A +  ++ + + KIL  L  AG+V+  RG  GG  + +P D+IT  D+ +A E
Sbjct: 31 LAASINVNPVIIRKILSQLKAAGLVKVQRGS-GGASIAKPLDEITFFDIYQAVE 83


>gi|146300166|ref|YP_001194757.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154584|gb|ABQ05438.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 149

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  ++ A  +    R  I  +A+     E F  KI+Q L K GI+ + +G 
Sbjct: 2   FSKACEYGIRASIFIATKSSKGIRVGIKDVAKEIDSPEPFTAKIMQILTKNGIIHSAKGV 61

Query: 61  RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + + A   I ++ +V A +       C    K +C     C +    +K      
Sbjct: 62  GGGFEVSKEALKSIKLIQIVDAIDGDKIYRGCGIGLK-ECSEEHPCPVHFEFKKIRGLLL 120

Query: 120 DVLTQYSIECL 130
            +L+  ++E L
Sbjct: 121 QMLSTTTLEQL 131


>gi|218515594|ref|ZP_03512434.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 76

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2  LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62 GGVRLCRPADQITI 75
          GG  L RPA +I I
Sbjct: 62 GGYSLSRPASEIRI 75


>gi|291617389|ref|YP_003520131.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
 gi|291152419|gb|ADD77003.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA  IT+ D+
Sbjct: 60 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADITLRDI 98


>gi|124002311|ref|ZP_01687164.1| RRF2 family protein [Microscilla marina ATCC 23134]
 gi|123992140|gb|EAY31508.1| RRF2 family protein [Microscilla marina ATCC 23134]
          Length = 148

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
          M    R    I + ++  I  D     SQ+ A++   + + + +I+  L    I+ +V G
Sbjct: 1  MQANGRFTTAIHICIFMQIKGDEKLISSQVLADSVKTNPVVIRRIVARLRDNDIIGSVAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
           +GG  L RPA+QI++ D+ +A  E+
Sbjct: 61 AKGGFFLKRPANQISLWDIYQAVRET 86


>gi|42526313|ref|NP_971411.1| hypothetical protein TDE0801 [Treponema denticola ATCC 35405]
 gi|41816425|gb|AAS11292.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
 gi|325473257|gb|EGC76452.1| hypothetical protein HMPREF9353_02247 [Treponema denticola F0402]
          Length = 144

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           C + +D+      +AE+   + + + K++  L  AG++E  +G  GG+ L + A QI+ L
Sbjct: 24  CKVTSDF------LAESVKTNPVVIRKLMSALKNAGLIEITQGT-GGIALKKKAAQISFL 76

Query: 77  DVVKATEESFFVAECFASHKI---DCPLVGSCGL---------TSVLRKALNAF 118
           D+  A  ES    + F  H     +CP+                + L K LN+F
Sbjct: 77  DIFNAV-ESIKDGKLFKIHDTPPNECPVAQKINFLLDGYFLDAQTTLEKKLNSF 129


>gi|148555080|ref|YP_001262662.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500270|gb|ABQ68524.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 152

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P     +A+A     + + +++  L + G+V + +G  GG  + RP 
Sbjct: 11  LHVLLHMA-EQDGPVTSEVLAKAMDTHPVVVRRVMAGLREQGLVRSEKGHGGGWTIARPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-AFFDV 121
           D IT+ D+  A      +A     H+ + P    C +   +  AL  AF D 
Sbjct: 70  DGITLRDIYGALGGPSLLA---MGHRTEAP---GCLVEQAVNAALGRAFHDA 115


>gi|332654223|ref|ZP_08419967.1| iron-sulfur cluster assembly transcription factor IscR
          [Ruminococcaceae bacterium D16]
 gi|332517309|gb|EGJ46914.1| iron-sulfur cluster assembly transcription factor IscR
          [Ruminococcaceae bacterium D16]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y +RV++  A         +  IA+   +SE +L  I++ L + G +  VRG
Sbjct: 3  MMVSTKGRYALRVMIDLAQQGGAGYIPLKDIAQRQGLSEKYLESIVKLLARNGDLAGVRG 62

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          + GG RL R     ++  +++ TE       C A
Sbjct: 63 KGGGYRLTRAPKDYSVGAILRLTEGKLAPVNCQA 96


>gi|121607635|ref|YP_995442.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
           eiseniae EF01-2]
 gi|121552275|gb|ABM56424.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
           eiseniae EF01-2]
          Length = 174

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L +   H         IA+   ++   + +I+  LV+AG++ + RG  GGV + R    
Sbjct: 12  ILSFVTYHGPDMIPTQTIAKWVNVNASRVRQIVARLVRAGLLASTRGGEGGVVIGRAPSD 71

Query: 73  ITILDVVKATEES----FFVAECFASHKIDC 99
           IT+LDV  A  E     F V   F+  K  C
Sbjct: 72  ITLLDVFDAVAEQDTALFCVDNPFSDWKDRC 102


>gi|312868812|ref|ZP_07729001.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
 gi|311095655|gb|EFQ53910.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    + +L+Y  I     N  S IA+    +   + +++  +VKAGI++   G 
Sbjct: 1  MKYSHRLSDAVHILVYLEILGS--NSSSAIADNVNSNPSLIRRLVASMVKAGILQR-SGH 57

Query: 61 RG--GVRLCRPADQITILDVVKATE 83
           G   ++L RPA Q+++LD+ +A E
Sbjct: 58 HGEITIKLTRPAAQVSLLDIYQAVE 82


>gi|325958233|ref|YP_004289699.1| phosphate uptake regulator PhoU [Methanobacterium sp. AL-21]
 gi|325329665|gb|ADZ08727.1| phosphate uptake regulator, PhoU [Methanobacterium sp. AL-21]
          Length = 299

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 21/115 (18%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           KR+D  ++ ++   +H D P    +IAE   ++  ++ K+LQP+VK G+V     RR   
Sbjct: 2   KRSDSTLKAILDVILH-DNPATQDEIAEKLGLTRRYVTKLLQPMVKRGVV-----RRA-- 53

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
                     ILD+ K  E     +E F   K      G+  +  +L+  +   F
Sbjct: 54  ---------YILDLKKFDE----FSEMFDEEKTSREYAGAYLIKDMLKNMVGHVF 95


>gi|300866831|ref|ZP_07111509.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335181|emb|CBN56669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 146

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          P +I  IA    I + +L ++L  L + G++ + RG +GG  L R   +IT+L+++   E
Sbjct: 27 PLQIRSIASQQNIPDRYLEQLLATLRRGGVIRSQRGAKGGYLLAREPWKITLLEILNCLE 86


>gi|291522993|emb|CBK81286.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
          GD/7]
          Length = 145

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGIV   +G    
Sbjct: 5  TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L + AD+I + D+ +A E
Sbjct: 63 AALAKSADKINMYDIYRAVE 82


>gi|169335460|ref|ZP_02862653.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258198|gb|EDS72164.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 141

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVRLCRPADQITILDVVKA 81
          +I+E  CI+     KIL  L KAG+V+T  G  +GG      A  IT+LDV +A
Sbjct: 27 EISENICINPARARKILSKLKKAGLVKTREGSVKGGYSFVLNAANITLLDVYEA 80


>gi|308186770|ref|YP_003930901.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
 gi|308057280|gb|ADO09452.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
          Length = 164

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          F+ K++ PL + GI+ +  GR G + L RPA  IT+ D+
Sbjct: 41 FIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADITLRDI 79


>gi|167769781|ref|ZP_02441834.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
           17241]
 gi|167668142|gb|EDS12272.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
           17241]
          Length = 121

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           +Q+ +   I + F +KI++ L KA  V   RG  GG RL     + T+ D++ A +   F
Sbjct: 10  AQLCQRELIPQPFAYKIMRKLSKASFVSITRGADGGCRLAVDLREKTLYDLLFAMDSVEF 69

Query: 88  VAECFAS-----HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           V  C A       +  C   G CG+ + L     A    L  +S+  ++  +
Sbjct: 70  VNACMAPGYQCLWRERCG--GKCGIHAQLESIQQAVDRELQSHSLASILSGK 119


>gi|89894263|ref|YP_517750.1| hypothetical protein DSY1517 [Desulfitobacterium hafniense Y51]
 gi|219668676|ref|YP_002459111.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89333711|dbj|BAE83306.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538936|gb|ACL20675.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 151

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 16/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVET 56
           M L+ R    +++L+  A     P  +   +EA  +S     + + +I+  L KAG++  
Sbjct: 1   MQLSSRFPVAVQILIIIAW---CPEDVKVTSEALAVSVNTNPVLIRRIMGYLKKAGLIAI 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
             G  GG +L R  ++IT+L V +A E  +   +    A     CP+   C +  VLR  
Sbjct: 58  SSGT-GGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCPI--GCRINDVLRPP 114

Query: 115 L----NAFFDVLTQYSIECLVRN 133
           L    NA    L + +I+ L+ +
Sbjct: 115 LEEARNALEGSLAKVTIQELLSS 137


>gi|225027880|ref|ZP_03717072.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
 gi|224954827|gb|EEG36036.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
          Length = 145

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGIV   +G    
Sbjct: 5  TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG-HAN 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L + AD+I + D+ +A E
Sbjct: 63 AALAKSADKINMYDIYRAVE 82


>gi|311745248|ref|ZP_07719033.1| Rrf2 family protein [Algoriphagus sp. PR1]
 gi|126577775|gb|EAZ81995.1| Rrf2 family protein [Algoriphagus sp. PR1]
          Length = 136

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +  I+ + + K +  L KAG+VE+ +G+ GG +L + +  I + ++  A + S  + 
Sbjct: 29  IAGSININPVMVRKEIGVLTKAGLVESRKGKVGGSKLAKRSSDIRLDEIYLAVKNSDVLG 88

Query: 90  ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
           +      + CP+  +    L S+  +  N+  D L   ++E  V+
Sbjct: 89  KKNLKPNVLCPIGKNINQKLGSLFSEIDNSVIDELHGKTLENFVK 133


>gi|229823777|ref|ZP_04449846.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
 gi|229786816|gb|EEP22930.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
          Length = 150

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I  L    +  D+    S  ++E+  ++ + +  +L  L  AGI+E+ +G
Sbjct: 1   MQISSRFTIAIHSLAVIYLRQDHQRVTSNFLSESIQVNPVVVRSVLSGLKAAGIIESRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG RL +P D IT  D+   T +S      F  H     DCP+
Sbjct: 61  S-GGSRLAKPLDAITFYDIY-VTVDSVDKEGLFNFHPNPHQDCPV 103


>gi|227871937|ref|ZP_03990329.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268]
 gi|227842231|gb|EEJ52469.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268]
          Length = 118

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--GVRLCRPADQITILDVVKATEE 84
           QIA +   +  ++ K+   L KAGI+E   GR+G  G RL +PA +I++L++ K+  E
Sbjct: 1  EQIANSVGTNASYIRKLTTRLSKAGIIE---GRKGISGFRLLKPAREISLLEIYKSIME 56


>gi|154174545|ref|YP_001408025.1| BadM/Rrf2 family transcriptional regulator [Campylobacter curvus
           525.92]
 gi|112803332|gb|EAU00676.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter curvus
           525.92]
          Length = 134

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+  +     P  +  I+    IS+ FL KILQ L K  I+++ +  
Sbjct: 1   MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKEQILKSYKVA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP 100
            GG  L      I+I  +++  E+    V EC  S    CP
Sbjct: 60  NGGFALQADPQNISIKTIIECAEKREVSVFECSTSAD-GCP 99


>gi|328958167|ref|YP_004375553.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
 gi|328674491|gb|AEB30537.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
          Length = 156

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVR 58
          M LTK  +  I +L   +  ++Y    S +  +     S  ++ KI++ LV +G+  ++ 
Sbjct: 1  MKLTKGLEQAICILAMLSTQDNYIPITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60

Query: 59 GRRGGVRLCRPADQITILDVVKATE 83
          G  GG  L +  ++I +L++V+A E
Sbjct: 61 GSNGGFILAKKPEKINLLEIVEALE 85


>gi|154684993|ref|YP_001420154.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
 gi|154350844|gb|ABS72923.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
          Length = 147

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L    I+ D  +    +A +   +  F+ KI+  L KAG+V+ VR  
Sbjct: 1   MSISSRFAVGIHILALIEINEDGISTSEFLAGSVNTNPAFIRKIVGMLKKAGLVK-VRPG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
             G  L +   +IT+LDV +A        E F+ H+   P    C +   ++  +   F+
Sbjct: 60  IAGAELAKDLTEITLLDVYRAV-NVVQDKELFSIHENPNP---QCPVGRNIQSTIGPIFE 115

Query: 121 V--------LTQYSIECLVRNRSSIKKIFN 142
           +        L   +IE +V++    +K+ N
Sbjct: 116 IAQSALEKALGHITIEDVVKDIIEKEKLTN 145


>gi|331003016|ref|ZP_08326528.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330413060|gb|EGG92435.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          +  IA+   +SE +L  I++ LVK  ++  +RG+ GG +L +    IT+ +V++  EE+ 
Sbjct: 28 LHDIAKRQELSEKYLESIIKLLVKNKLLVGLRGKGGGYKLTKSPSDITVGEVLRIAEENI 87

Query: 87 FVAE 90
           + +
Sbjct: 88 MMDD 91


>gi|254387868|ref|ZP_05003106.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
 gi|326446779|ref|ZP_08221513.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701593|gb|EDY47405.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
          Length = 146

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L + G+V++ RG   G  L R    IT+LDV +A E     
Sbjct: 35  QIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWMLSRDLPTITLLDVYEAVETGPVF 94

Query: 89  A--------ECFASHKIDCPLVGSC--GLTSVLRKAL--NAFFDVL 122
           A        EC     I  P++G+   G+ + LR  L      DVL
Sbjct: 95  ALHPAAPDPECVVGRGI-APVLGAAYDGVEAALRAELARTTLEDVL 139


>gi|254454314|ref|ZP_05067751.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
          antarcticus 238]
 gi|198268720|gb|EDY92990.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
          antarcticus 238]
          Length = 142

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +S  +L ++   L +AG+VE+VRG  GG RL R    I +++++ A +E+
Sbjct: 27 VSLPYLEQLFVKLRRAGLVESVRGPGGGYRLARRTSDIRVVEILSAVDET 76


>gi|119505399|ref|ZP_01627473.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
 gi|119458854|gb|EAW39955.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
          Length = 138

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  ++ I+    IS  +L ++   L +  +V +VRG  GG RL R    + + +++ A +
Sbjct: 12  PVSLADISGRQEISLSYLEQLFAKLRREALVTSVRGPGGGYRLARDRATLFVAEIIDAVD 71

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
           ES  V  C  + K +C     C    + +   +     L+  S+  LV NR+   ++
Sbjct: 72  ESVDVTNC--NGKGNCHHGEVCLTHDLWQDLSDRIHSFLSGISLADLVDNRAGKARL 126


>gi|152994406|ref|YP_001339241.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835330|gb|ABR69306.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
          Length = 152

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M    R D  +  +++  IH    D P    +IA     + + + + +  L   G V +V
Sbjct: 1   MRFLMRKDSRLSRMLHVLIHMNQLDAPATSEKIASMLNTNPVVVRRTMAGLRDKGYVSSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
           +G  GG  L      IT+LD+  A  ES       +     CP+
Sbjct: 61  KGHGGGWSLAISLSDITLLDIHNAIGESSVFTIGLSDEHTSCPI 104


>gi|294818112|ref|ZP_06776754.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
           clavuligerus ATCC 27064]
 gi|294322927|gb|EFG05062.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           QIA +   + + + ++L  L + G+V++ RG   G  L R    IT+LDV +A E     
Sbjct: 32  QIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWMLSRDLPTITLLDVYEAVETGPVF 91

Query: 89  A--------ECFASHKIDCPLVGSC--GLTSVLRKAL--NAFFDVL 122
           A        EC     I  P++G+   G+ + LR  L      DVL
Sbjct: 92  ALHPAAPDPECVVGRGI-APVLGAAYDGVEAALRAELARTTLEDVL 136


>gi|83269916|ref|YP_419207.1| hypothetical protein BAB2_1077 [Brucella melitensis biovar
          Abortus 2308]
 gi|256015879|ref|YP_003105888.1| transcriptional regulator, RrF2 family [Brucella microti CCM
          4915]
 gi|82940190|emb|CAJ13243.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
          Abortus 2308]
 gi|255998539|gb|ACU50226.1| transcriptional regulator, RrF2 family [Brucella microti CCM
          4915]
          Length = 131

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
          S+IAE   I   FL  I   L  AG V + +G+ GG  L  PA +I I ++++A + +  
Sbjct: 16 SEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLAHPASEIAIGNIIRALDGALA 75

Query: 88 VAEC 91
             C
Sbjct: 76 PIAC 79


>gi|88658169|ref|YP_507438.1| rrf2/aminotransferase, class V family protein [Ehrlichia
          chaffeensis str. Arkansas]
 gi|88599626|gb|ABD45095.1| rrf2/aminotransferase, class V family protein [Ehrlichia
          chaffeensis str. Arkansas]
          Length = 492

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
          +S IA +  +SE +L +I+  L K G++ + +G  GG  L +  + IT+  ++++  E+ 
Sbjct: 1  MSHIANSQSLSEGYLEQIIVKLKKQGLINSTKGPGGGYSLNKSPNSITLNLILESIGENI 60

Query: 87 FVAECFASHKIDC 99
           +  C  +H I C
Sbjct: 61 KITRC-KNHLIGC 72


>gi|296116889|ref|ZP_06835494.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976582|gb|EFG83355.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD+ ++ L+ C   +  P  + +I+  C +S   +  +LQ L   G++E     
Sbjct: 1   MQLSLHTDHAVKFLI-CMTQSGMPACVQEISGRCGLSTREVAGVLQDLHHCGLIEHATTG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            G +RL +   ++ I DV+++ E            +   P  G+     +   A  AF D
Sbjct: 60  EGFLRLRKDPARVRIGDVIRSIEAV----------RPMTPKEGA--FAPMFDMAHAAFVD 107

Query: 121 VLTQYSIECL 130
            L  YS+  L
Sbjct: 108 ALNDYSLSDL 117


>gi|116255261|ref|YP_771094.1| hypothetical protein pRL110061 [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115259909|emb|CAK03003.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 151

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R D  +  +++  IH D   +      IA+    + + + + +  L + G V + +G  G
Sbjct: 2  RNDSRLSRMLHVLIHMDKHQHSATSDMIAKMLNTNPVVVRRTMAGLREQGYVRSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L RP   IT+LDV  A  E    A   A  +  C
Sbjct: 62 GWTLVRPLSDITLLDVYNAIGEPHLFAIGPADDQPQC 98


>gi|261406785|ref|YP_003243026.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261283248|gb|ACX65219.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 160

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           MH+    +  +  L+   + N  P+R       I++    S  +  K+L+ LV A ++ +
Sbjct: 1   MHMKTGVEQSVYALV---LLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITS 57

Query: 57  VRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTS-VLRK 113
           V G +GG RL +  + I + DV  A E  +S + +       +D     SC L S ++ +
Sbjct: 58  VPGIKGGFRLRKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEE 117

Query: 114 ALNAFFDVLTQYSIECL 130
           A  ++  VL + +I  L
Sbjct: 118 AETSWKAVLKRETIASL 134


>gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
          6192]
 gi|306532000|gb|ADN01534.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
          6192]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
          ++A +  + E  L KILQ L +AG++  V+G  GG  L R   ++TI +V +A +E
Sbjct: 39 ELASSTGLPEARLRKILQRLGRAGVLRAVQGVHGGYVLERSLSELTIGEVARALDE 94


>gi|117164456|emb|CAJ88001.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETV 57
           M    R    + VL + A +H    + ++  QIA +   + + + + L  L KAG+V   
Sbjct: 1   MSANSRMTIAVHVLTWIALVHGRGRDVVTSDQIATSVATNPVVIRRSLADLRKAGLVTVR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLR- 112
           +G   G  L R  + I +LDV +A  +       FA H+ +    CP+    G+   LR 
Sbjct: 61  QGAGAGYTLARAPESIALLDVFQAVHDE----PLFALHRSEPNQVCPV--GRGIQPALRH 114

Query: 113 ---KALNAFFDVLTQYSIECLVRN 133
               A  AF   L   SI  ++R+
Sbjct: 115 VYTDAEEAFRRELAGVSIADVLRD 138


>gi|171317789|ref|ZP_02906970.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          ambifaria MEX-5]
 gi|171097073|gb|EDT41928.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          ambifaria MEX-5]
          Length = 146

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 6  RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  IH D    P     IA     + + + ++L  L   G V++ +G  G
Sbjct: 2  RTDSRLSRMLHALIHMDQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDCGYVQSEKGHGG 61

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          G  L    D IT+LDV +A  E    ++  +    +C
Sbjct: 62 GWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPEC 98


>gi|145589828|ref|YP_001156425.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048234|gb|ABP34861.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 195

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +TK     +  L+  A H++    ++  +IA+   +S   +  +L+PL ++G+V  ++
Sbjct: 1  MEVTKAVKVALNTLVDIASHSNKGQLVTVPEIAQRLNMSISRIELLLRPLRESGLVIGIK 60

Query: 59 GRRGGVRLCRPADQITILDVVKA 81
          GR GG +L +    ITI D+V A
Sbjct: 61 GRTGGYQLSKDPRIITIKDIVLA 83


>gi|284048055|ref|YP_003398394.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
 gi|283952276|gb|ADB47079.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
          Length = 144

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 44  ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
           ++  L KAG++   RG  GGV + RP DQIT  DV  A E        F  H+   PL  
Sbjct: 45  LMMDLKKAGLISVRRGP-GGVEVTRPLDQITFRDVYDAVETR--KDRLFNFHENPNPL-- 99

Query: 104 SCGLTSVLRKALNA-FFDVLTQYS 126
            C +   + +AL+    D+  Q+ 
Sbjct: 100 -CPVGRNIHQALDGKLLDIQKQFQ 122


>gi|229096463|ref|ZP_04227435.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|229115387|ref|ZP_04244795.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228668107|gb|EEL23541.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228687025|gb|EEL40931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EES 85
           +AE+   + + + KI+  L +AG V   RG  GG  L +   +IT+LDV  A     E+ 
Sbjct: 32  MAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYHAVNVVEEDK 90

Query: 86  FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            F          DCP+  +    L  +L +A +A  +VL   S+E L     S+++  NA
Sbjct: 91  LF--HIHEQPNPDCPIGANIQVVLEVILIQAQSAMEEVLKNISMEQLFE---SLQEKMNA 145


>gi|238784222|ref|ZP_04628235.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
          43970]
 gi|238714931|gb|EEQ06930.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
          43970]
          Length = 164

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A+H +D P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALHSHDGPVPLADISDRQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L + A  I +  V+ A ++S     C
Sbjct: 61 PGGGYLLGKDAAAIAVGAVIIAVDDSVDATRC 92


>gi|291518758|emb|CBK73979.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
           fibrisolvens 16/4]
          Length = 133

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 9   YGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           Y +RV++  +  N  P     +  IAE   IS+ +L  I++ LV  G V+ V G+ GG +
Sbjct: 8   YALRVMIDLSQQN--PEEYIPLKDIAERQDISKKYLEIIVKELVHGGFVKGVSGKGGGYQ 65

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           L R  ++ ++ ++++  E S     C A   ++CP  G C
Sbjct: 66  LTRKPEEYSVGEIIELMEGSLSPVACLADENMECPREGIC 105


>gi|309777458|ref|ZP_07672413.1| transcriptional regulator superfamily [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308914772|gb|EFP60557.1| transcriptional regulator superfamily [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 150

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
          ++A++ C +   + K++  L KAG++ T  G  GG  L  PA  I + D+ +A ++   
Sbjct: 30 ELAKSICTNPARIRKVMAKLKKAGLLITREGNSGGYELSAPASAIRLSDLAQALQQPLL 88


>gi|187780034|ref|ZP_02996507.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
           15579]
 gi|187773659|gb|EDU37461.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
           15579]
          Length = 141

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T+  DY +RV++Y +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1   MKITQEADYALRVILYLS-KLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117
           G +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K    
Sbjct: 60  GVKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRK 119

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   + + ++  + SI
Sbjct: 120 LVSELEAVNFQEILDQKGSI 139


>gi|254254969|ref|ZP_04948286.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
 gi|124899614|gb|EAY71457.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
          Length = 146

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 6   RTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R D  +  +++  IH D    P     IA     + + + ++L  L   G V++ +G  G
Sbjct: 2   RADSRLSRMLHALIHMDQADGPLTSETIATMLGTNAVVVRRLLGGLRDCGYVQSEKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L    D IT+LDV +A  E    ++  +    +C +  +    L++VL+ A  A   
Sbjct: 62  GWALGVALDDITLLDVYRAVGEPPLFSDLVSEDTPECLVEQAVNAHLSAVLKDAEAALLA 121

Query: 121 VLTQYSIECLVRN 133
              + ++  L R 
Sbjct: 122 RFGEVTLGMLSRE 134


>gi|23500834|ref|NP_700274.1| RrF2 family protein [Brucella suis 1330]
          Length = 131

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
          S+IAE   I   FL  I   L  AG V + +G+ GG  L  PA +I I ++++A + +  
Sbjct: 16 SEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLTHPASEIAIGNIIRALDGALA 75

Query: 88 VAEC 91
             C
Sbjct: 76 PIAC 79


>gi|220925187|ref|YP_002500489.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219949794|gb|ACL60186.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 167

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVRGRR 61
             R    +  ++  A+H   P  +S  A A    +    L  +LQ LV+ G+++ +RG  
Sbjct: 26  PPRLALAVAAVIDIALHA-RPQPVSAKALAARHGLPPRHLETVLQALVRHGLLKGLRGPH 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R   +I+  DV +A              + D P V +  +  +L  A  AF   
Sbjct: 85  GGYELARERRRISAGDVARAV-------LSLEGPEPDKPAVAAALVDPLLAAAGQAFLAT 137

Query: 122 LTQYSIECLVRNRSSIKKIF 141
           L   ++E L R  +   +IF
Sbjct: 138 LDAVTVEDLCRQ-AEAARIF 156


>gi|49478477|ref|YP_037503.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49330033|gb|AAT60679.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 137

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLGLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           D++ +  + + T E     +C  S+         C + S +RK L   F    +Y  E L
Sbjct: 69  DEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIFLGAEEYLGEYL 121


>gi|30263359|ref|NP_845736.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47528737|ref|YP_020086.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186205|ref|YP_029457.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|65320688|ref|ZP_00393647.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|165868327|ref|ZP_02212987.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167632500|ref|ZP_02390827.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167637112|ref|ZP_02395392.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170685042|ref|ZP_02876267.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170704922|ref|ZP_02895387.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177649964|ref|ZP_02932965.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190564684|ref|ZP_03017605.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035535|ref|ZP_03102939.1| rrf2 family protein [Bacillus cereus W]
 gi|196038146|ref|ZP_03105456.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206975367|ref|ZP_03236280.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|218904535|ref|YP_002452369.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222096863|ref|YP_002530920.1| rrf2 family protein [Bacillus cereus Q1]
 gi|227813772|ref|YP_002813781.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229604113|ref|YP_002867615.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254685971|ref|ZP_05149830.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723374|ref|ZP_05185162.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254738442|ref|ZP_05196145.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254742392|ref|ZP_05200077.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254752758|ref|ZP_05204794.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254761271|ref|ZP_05213295.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|301054901|ref|YP_003793112.1| putative Rrf2 family transcriptional regulator [Bacillus anthracis
           CI]
 gi|30257993|gb|AAP27222.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47503885|gb|AAT32561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180132|gb|AAT55508.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|164715053|gb|EDR20570.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167514619|gb|EDR89985.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167532798|gb|EDR95434.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170129777|gb|EDS98639.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170671302|gb|EDT22040.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172083916|gb|EDT68975.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190564001|gb|EDV17965.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991836|gb|EDX55800.1| rrf2 family protein [Bacillus cereus W]
 gi|196031416|gb|EDX70013.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206746269|gb|EDZ57663.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|218539133|gb|ACK91531.1| rrf2 family protein [Bacillus cereus AH820]
 gi|221240921|gb|ACM13631.1| rrf2 family protein [Bacillus cereus Q1]
 gi|227005217|gb|ACP14960.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229268521|gb|ACQ50158.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|300377070|gb|ADK05974.1| putative transcriptional regulator, Rrf2 family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 137

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           D++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 69  DEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|315497324|ref|YP_004086128.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315415336|gb|ADU11977.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 163

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D      ++A+    + + + +++  L   G+V++ +G  GG RL RP 
Sbjct: 11  LHVLLHLA-DTDKAVTSERLAQMMSTNPVVIRRVMAGLRAQGLVQSEKGHGGGWRLGRPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            ++T+ +V +A  E    A    +   +C          ++ +A+NA  D
Sbjct: 70  KEVTLAEVYRAVGEPELFAMGNRTENPEC----------LVEQAVNAAID 109


>gi|329769741|ref|ZP_08261142.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
 gi|328838103|gb|EGF87721.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
          Length = 138

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A +   +   + KI+  L K G++E+ +G+  G+ L +    IT+ DV +    +  + 
Sbjct: 27  LANSVNTNSSHIRKIIALLKKGGLIESQQGKT-GMALAKSTKDITLADVYQIVYPNKHLV 85

Query: 90  ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
                   +CP+  +    L  V  +A +AF++ L   ++E L++
Sbjct: 86  NIHEGANKECPVGNNIENLLQPVFNEAQDAFYNKLASKTLEQLIK 130


>gi|228472954|ref|ZP_04057711.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275536|gb|EEK14313.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 143

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AI++  D    + +I+E   I   FL K+LQ L K   + + +G 
Sbjct: 2   LSNSSKYAINAVLYLAINSSVDRKKGVKEISEVLHIPTAFLAKLLQILAKKKAICSAKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     +  + D+V+  +     + C    +  C     C +   ++   + F  
Sbjct: 62  GGGFYITPENLKAPLADIVRYIDGGDKFSICLLGIR-SCSEETPCPMHYAVKPFRDEFLQ 120

Query: 121 VLTQYSIE 128
            L +++IE
Sbjct: 121 ELERHNIE 128


>gi|119476390|ref|ZP_01616741.1| iron-sulfur cluster assembly transcription factor IscR [marine
           gamma proteobacterium HTCC2143]
 gi|119450254|gb|EAW31489.1| iron-sulfur cluster assembly transcription factor IscR [marine
           gamma proteobacterium HTCC2143]
          Length = 174

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH    P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 17  MRLTTKGRYAVTAMLDLAIHVGAGPISLADISSRQGISLSYLEQLFAKLRRGELVSSVRG 76

Query: 60  RRGGVRLCRPADQITILDVVKATEE 84
             GG  L R    I +  +V A  E
Sbjct: 77  PGGGYLLSRGGADIFVSQIVDAVNE 101


>gi|313676819|ref|YP_004054815.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
          DSM 4126]
 gi|312943517|gb|ADR22707.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
          DSM 4126]
          Length = 144

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K  +Y IR  +Y A  +     +    IA+     E F  KILQ LVK  +V +++G 
Sbjct: 2  FSKTCEYAIRATIYIANKSKEGTNVGLKDIAKNIDSPEAFTAKILQKLVKDDLVSSIKGP 61

Query: 61 RGGVRL-CRPADQITILDVVKATEES 85
           GG  L      ++ ++DVV+  + S
Sbjct: 62 NGGFSLSATQQKEVYLIDVVRCIDGS 87


>gi|217978393|ref|YP_002362540.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217503769|gb|ACK51178.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 148

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 18  AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           AIH+   P     +A    +    L  +LQ LV+A I++ +RG RGG  L R   +IT  
Sbjct: 19  AIHSRPLPVAAKALAARLELPPRHLETLLQALVRANILKGLRGPRGGYELARERRKITAG 78

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
            V++A                D  LV    +  ++ KA  AF   L   +IE + R    
Sbjct: 79  AVLRA----VLSDAAGPGEPADSKLVAKV-IAPMVEKAGAAFLAELDNITIEDICRRADE 133

Query: 137 IKKIFNAG 144
           +    +AG
Sbjct: 134 LNLYRDAG 141


>gi|257064536|ref|YP_003144208.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792189|gb|ACV22859.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 152

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          P   +QIAE+   +  ++ ++   L  AGI+ +  GR G V L  PAD++T+LDV +A
Sbjct: 22 PMSSAQIAESIGTNPSWVRRLATALRGAGIIASRPGRTGFV-LAVPADELTLLDVYRA 78


>gi|153811085|ref|ZP_01963753.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
 gi|149832973|gb|EDM88056.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
          Length = 145

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          TK +D  I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGI+   +G    
Sbjct: 5  TKLSD-TIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIIVNTQG-HAN 62

Query: 64 VRLCRPADQITILDVVKATE 83
            L + AD+I + D+ +A E
Sbjct: 63 AALAKSADKINMYDIYRAVE 82


>gi|110679918|ref|YP_682925.1| transcriptional regulator, putative [Roseobacter denitrificans
          OCh 114]
 gi|109456034|gb|ABG32239.1| transcriptional regulator, putative [Roseobacter denitrificans
          OCh 114]
          Length = 157

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1  MKLSTKGRYAMVALADIAMQPQDKLVSLGDIATRQAISLAYLEQLFVKLRRAELVASVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
            GG RL R    I +++++ A +E+
Sbjct: 61 PGGGYRLTRSPSDIRVVEILSAVDET 86


>gi|330720575|gb|EGG98846.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC2047]
          Length = 130

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +S I+    IS  +L ++   L +  +V +VRG  GG +L R  +QI + ++V A  ES 
Sbjct: 1   MSDISSRQDISLSYLEQLFSKLRRRELVTSVRGPGGGYQLARELEQICVAEIVDAVNESV 60

Query: 87  FVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQYSIECLVRNR 134
               C   +  +C    +C    L   L K +++F   L+  S+  LV  R
Sbjct: 61  DATLCNGDN--NCQHGHACLTHNLWDDLSKQIHSF---LSSISLRDLVDRR 106


>gi|291010047|ref|ZP_06568020.1| transcriptional regulator Rrf2 family protein, putative
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 147

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ R+   I  L   A   +     ++IA++   + + + +IL  L  A +V +  GR G
Sbjct: 4   LSSRSAVAIHALAMLAHRREGSLTSAEIADSLGSNPVLVRRILGRLRNAELVWSTEGRGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
           G  L R    IT+ D   A EE     + F+ H    P  G C
Sbjct: 64  GWSLARAPRDITLYDAYAAVEE----GQIFSRHT--HPPSGVC 100


>gi|284039030|ref|YP_003388960.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283818323|gb|ADB40161.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 142

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++K+  Y I+ L   A+   Y   P  I+ IA+   I   FL  IL  +   GI+++ +G
Sbjct: 2   ISKKAKYAIKALK--ALTESYGSGPILITDIAKRENIPHKFLEGILLEMRNHGILQSQKG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKAL 115
           + GG  L    ++I +  V++  +       C    F     DC    +C +  ++ +  
Sbjct: 60  KGGGYLLRVDPERINLAQVIRIIDGPIAPTPCVSLNFYVRCDDCADEETCSIRPIMLRVR 119

Query: 116 NAFFDVLTQYSIECLV-RNRSSI 137
           +A   V  + +I+ LV +N+  I
Sbjct: 120 DANLAVYEKTTIQMLVDKNKQPI 142


>gi|15672540|ref|NP_266714.1| hypothetical protein L153086 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13432280|sp|Q48660|YFFB_LACLA RecName: Full=Putative HTH-type transcriptional regulator yffB
 gi|12723445|gb|AAK04656.1|AE006290_1 hypothetical protein L153086 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 156

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A    +S  +L KI++ LV  G++ +  G+ GG  L +    I+  DV  A E      
Sbjct: 31  LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKELHDISFYDVFLAIEGR---G 87

Query: 90  ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127
             F S  +    +GS       C +TS L +  N     L+  S+
Sbjct: 88  RIFQSQGLLQNFIGSESGKAKRCAITSALDEIENTLVRTLSNVSL 132


>gi|291287446|ref|YP_003504262.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884606|gb|ADD68306.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 141

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           + +  DY IR+++Y A       +   I ++  +S   + KI+  L   G + T  G+ G
Sbjct: 5   ILREEDYAIRIIIYLATEGKMV-KTKDICKSLYLSRPIVVKIINKLKSCGFLITKTGKEG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ +       ++ D+++    +  + +C  +HK  C L+  C +  +  +      + L
Sbjct: 64  GLTIAEKIYDASLYDILQCMGFNSRMNQC-TTHKATCKLMPICSVNVLFCEIQQDIENRL 122

Query: 123 TQYSI-ECLVRNRS 135
            Q  I E L  NR 
Sbjct: 123 KQAKIKEFLFENRD 136


>gi|315612720|ref|ZP_07887631.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
           49296]
 gi|315314830|gb|EFU62871.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
           49296]
          Length = 145

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 14/140 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R      +++  A+  D  ++++   +A +  ++ + + K L  L KAG++   R
Sbjct: 1   MQISSRFTIATHMMIIIALQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115
           G  GG  + +    I++LDV +A E      + F+ H     +CP+     + +VL + L
Sbjct: 60  G-TGGTEIIKDLKDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHAVLDQKL 116

Query: 116 NAFFDVLTQYSIECLVRNRS 135
              FDV  Q ++E  +R  S
Sbjct: 117 ---FDV--QAAMENQLRQTS 131


>gi|306829070|ref|ZP_07462260.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|322374754|ref|ZP_08049268.1| Rrf2 family protein [Streptococcus sp. C300]
 gi|304428156|gb|EFM31246.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|321280254|gb|EFX57293.1| Rrf2 family protein [Streptococcus sp. C300]
          Length = 145

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 14/140 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R      +++  A+  D  ++++   +A +  ++ + + K L  L KAG++   R
Sbjct: 1   MQISSRFTIATHMMISIAMQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115
           G  GG  + +    I++LDV +A E      + F+ H     +CP+     + +VL + L
Sbjct: 60  G-TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHAVLDQKL 116

Query: 116 NAFFDVLTQYSIECLVRNRS 135
              FDV  Q ++E  +R  S
Sbjct: 117 ---FDV--QAAMENQLRQTS 131


>gi|254421022|ref|ZP_05034746.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
 gi|196187199|gb|EDX82175.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
          Length = 162

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +  L++ A H      P    Q+A     + + + + +  L + G+V + +G  GG RL 
Sbjct: 11 LHALLHMAEHEARTGAPMTSDQLAVCLSTNPVVVRRTMAGLREQGLVASEKGHGGGWRLA 70

Query: 68 RPADQITILDVVKATEESFFVAEC 91
          RP DQ+T+  V  A  E     E 
Sbjct: 71 RPLDQVTLGQVNTALGEPGLFPEA 94


>gi|220911591|ref|YP_002486900.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Arthrobacter chlorophenolicus A6]
 gi|219858469|gb|ACL38811.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 161

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R LM  A         +Q IA++       + K +  L   G+++  RG
Sbjct: 1   MKINAFADVSLRALMVLAAAPGNQLLTTQNIADSVGTPYNHVSKAMARLRTMGLIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL       T+  +++  +     A+C A+   +CPL+  C L + L +A  AF+
Sbjct: 61  RTGGSRLSSAGRTATVGQILRELDTRTDPADCMAATG-NCPLINECKLRAALARAREAFY 119

Query: 120 DVLTQYSIECLVRNR 134
             L    I  L  +R
Sbjct: 120 RELDPVVIANLPGSR 134


>gi|326406059|gb|ADZ63130.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
           subsp. lactis CV56]
          Length = 156

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A    +S  +L KI++ LV  G++ +  G+ GG  L +    I+  DV  A E      
Sbjct: 31  LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87

Query: 90  ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127
             F S  +    +GS       C +TS L +  N     L+  S+
Sbjct: 88  RIFQSQGLLQNFIGSESGKAKRCAITSALDEIENTLVRTLSNVSL 132


>gi|281491024|ref|YP_003353004.1| Rrf2 family transcriptional regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374782|gb|ADA64302.1| Transcriptional regulator, Rrf2 family [Lactococcus lactis subsp.
           lactis KF147]
          Length = 156

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A    +S  +L KI++ LV  G++ +  G+ GG  L +    I+  DV  A E      
Sbjct: 31  LANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87

Query: 90  ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127
             F S  +    +GS       C +TS L +  N     L+  S+
Sbjct: 88  RIFQSQGLLQNFIGSESGKATRCAITSALDEIENTLVRTLSNVSL 132


>gi|311030960|ref|ZP_07709050.1| transcriptional regulator, BadM/Rrf2 family protein [Bacillus sp.
           m3-13]
          Length = 137

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF- 87
           ++AE      +FL KIL+ LVK  +++   GR GG  L +   +I + +V  A +   F 
Sbjct: 32  ELAEKLNSKSVFLRKILRHLVKTELIQAKEGRDGGYFLVKDPSEIKLSEVYDAMKAETFP 91

Query: 88  -------VAECFAS 94
                    ECFAS
Sbjct: 92  KGFFNVESKECFAS 105


>gi|290579608|ref|YP_003484000.1| hypothetical protein SmuNN2025_0082 [Streptococcus mutans NN2025]
 gi|254996507|dbj|BAH87108.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 157

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  +   D     SQ ++     S  +L KI++ LV  G++ ++ G
Sbjct: 1   MKLSSGWEQSVYVLLILSQLPDSKTINSQSLSLRLGTSHSYLKKIIKLLVNEGLITSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
           + GG  L +  + IT  DV  A E      + FAS ++    +G
Sbjct: 61  KYGGFSLAKSLEDITFYDVFIAVEGR---GKIFASQQLLKKFLG 101


>gi|226952787|ref|ZP_03823251.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226836490|gb|EEH68873.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 139

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 14  LMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +++  +H    N+I    +IA     + + + + +  L  AG +++V+G +GG  L    
Sbjct: 1   MLHVLLHMARQNKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGFIQSVKGPKGGWHLIADL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           ++ T+LD+  A  E    A     ++ + P    CG+  V+ +AL
Sbjct: 61  EKTTLLDIYNAVGEPTIFA---IGNERENP---ECGVERVVNEAL 99


>gi|331266849|ref|YP_004326479.1| Rrf2 family protein; transcriptional regulator,putative
           [Streptococcus oralis Uo5]
 gi|326683521|emb|CBZ01139.1| Rrf2 family protein; transcriptional regulator,putative
           [Streptococcus oralis Uo5]
          Length = 145

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R      +++  A+  D  ++++   +A +  ++ + + K L  L KAG++   R
Sbjct: 1   MQISSRFTIATHMMIIIAMQ-DTESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115
           G  GG  + +    I++LDV +A E      + F+ H     +CP+     +  VL + L
Sbjct: 60  G-TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHGVLDQKL 116

Query: 116 NAFFDVLTQYSIECLVRNRS 135
              FDV  Q ++E  +R  S
Sbjct: 117 ---FDV--QAAMENQLRQTS 131


>gi|294650114|ref|ZP_06727497.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824021|gb|EFF82841.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 139

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 14  LMYCAIHNDYPNRI---SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +++  +H    N+I    +IA     + + + + +  L  AG++++V+G +GG  L    
Sbjct: 1   MLHVLLHMARQNKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGLIQSVKGPKGGWHLIADL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           ++ T+LD+  A  E    A     ++ + P    CG+  V+  AL
Sbjct: 61  EKTTLLDIYNAVGEPTIFA---IGNERENP---ECGVERVVNAAL 99


>gi|317406169|gb|EFV86423.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 148

 Score = 37.4 bits (85), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 6   RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R+D  +  +++  +H    D P     I +    + + + +++  L + G V++ +G  G
Sbjct: 2   RSDNRLSRMLHVLLHMAEQDAPLTSETIGKMLNTNPVVVRRMMSGLRERGYVQSEKGHGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVA--------ECFASHKIDCPLVGS 104
           G  L RP  ++T+LDV +A  E    A        +C     ++  L G+
Sbjct: 62  GWVLTRPLAELTLLDVYQALGEPPIFALGLDQSEPKCLVEQAVNAGLEGA 111


>gi|154244034|ref|YP_001414992.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
          autotrophicus Py2]
 gi|154158119|gb|ABS65335.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
          autotrophicus Py2]
          Length = 146

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          L  +LQ LV AG+++ VRG RGG  L R   ++++ ++V+  E
Sbjct: 43 LEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVE 85


>gi|311745462|ref|ZP_07719247.1| Rrf2 family protein [Algoriphagus sp. PR1]
 gi|126578014|gb|EAZ82234.1| Rrf2 family protein [Algoriphagus sp. PR1]
          Length = 138

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y +  L Y   H D     I +IAE   IS  FL  IL  L KAG++ + +G+ 
Sbjct: 2   LSKKTKYALHALTYLGKHKDEKTVLIHEIAEEHGISHKFLENILLELKKAGLLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +    I +  V++  +    +  C + +      +C     CG+  VL K  + 
Sbjct: 62  GGYYLIKEPKDIPLSKVIRLLDGPIALLPCVSLNYYEPCDECKNEAQCGINKVLIKVRDE 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++E +++
Sbjct: 122 TLKILENKTLEDILK 136


>gi|294791271|ref|ZP_06756428.1| Rrf2 family protein [Scardovia inopinata F0304]
 gi|294457742|gb|EFG26096.1| Rrf2 family protein [Scardovia inopinata F0304]
          Length = 150

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 11 IRVLMYCAI-HNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          + +++Y AI HN  P++++   IA++   +   + KI+  L KAG++ + RG+   V + 
Sbjct: 15 VHIMLYLAIKHN--PDQLTSEAIAQSVNTNPSAVRKIMSNLKKAGLISSHRGKADPV-II 71

Query: 68 RPADQITILDV 78
          RP   IT+LD+
Sbjct: 72 RPLKDITLLDI 82


>gi|228990968|ref|ZP_04150931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
 gi|228997055|ref|ZP_04156686.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|229004710|ref|ZP_04162447.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228756598|gb|EEM05906.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228762680|gb|EEM11596.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|228768748|gb|EEM17348.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
           IAE+   + + + KI+  L +A  V   RG  GG  L +  ++IT+LDV  A    E+  
Sbjct: 31  IAESVNTNPVVIRKIMSDLKRAEFVYVNRGP-GGAELLKDLNEITLLDVYHAVNVVEADK 89

Query: 88  VAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
           +         DCP+  +    L  VL +A +A  +VL   ++E L
Sbjct: 90  LFHIHEQPNPDCPIGANIQAVLEVVLVQAQSAMEEVLKNITMENL 134


>gi|163785917|ref|ZP_02180365.1| transcriptional regulator, BadM/Rrf2 family protein
          [Flavobacteriales bacterium ALC-1]
 gi|159877777|gb|EDP71833.1| transcriptional regulator, BadM/Rrf2 family protein
          [Flavobacteriales bacterium ALC-1]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K  +YGI+  +Y A ++    R+S  +IA+       F  KILQ LV+  I+ +V+G 
Sbjct: 2  FSKACEYGIKATIYIATNSYEKKRVSLKEIAKEIDSPVAFTAKILQDLVRHQIINSVQGA 61

Query: 61 RGGVRL 66
           GG  +
Sbjct: 62 YGGFEI 67


>gi|225018040|ref|ZP_03707232.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
          DSM 5476]
 gi|224949186|gb|EEG30395.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
          DSM 5476]
          Length = 153

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++ R    +  L++ +  ++      ++A +   + + + K+L  L KAG++E   G 
Sbjct: 1  MKISSRFTVAVHCLLFISCSDEKITS-EKLAASVNTNPVVIRKVLGKLKKAGLIEVYSGT 59

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GG  L +PA  IT+LD+  A +
Sbjct: 60 -GGAALLKPASSITLLDIFHAAD 81


>gi|254524248|ref|ZP_05136303.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
           SKA14]
 gi|219721839|gb|EED40364.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
           SKA14]
          Length = 151

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 37/88 (42%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +M   +    P    Q+A       + + ++L  L KAG+V + RG  GG +L R A  I
Sbjct: 13  VMAHLVGQSAPRTSEQLASCLPTHPVVIRRLLAQLHKAGLVHSARGHGGGSQLARDAATI 72

Query: 74  TILDVVKATEESFFVAECFASHKIDCPL 101
           T+ D+  A      V          CP+
Sbjct: 73  TLHDIYLAVGAPPLVQVGTRGSGGGCPI 100


>gi|167755523|ref|ZP_02427650.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
 gi|167704462|gb|EDS19041.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
          Length = 167

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + L   TDY IR+++Y AI  D      +++E   I +  +FKI + L    I+    G 
Sbjct: 37  VQLKVSTDYAIRIVLYIAIKKDIVQS-KELSETLGIPQSTVFKIGKKLSDNEIISIATGI 95

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           +GG +L +    I+I  ++   E +  +  C    K
Sbjct: 96  QGGFKLKKHPKDISIFSIIDIFEPTIRINSCLEEDK 131


>gi|83952084|ref|ZP_00960816.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius nubinhibens ISM]
 gi|83837090|gb|EAP76387.1| iron-sulfur cluster assembly transcription factor IscR, putative
          [Roseovarius nubinhibens ISM]
          Length = 143

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          IS  +L ++   L +A +V +VRG  GG RL RP  +I + +++ A +E+
Sbjct: 27 ISLPYLEQLFVKLRRAELVASVRGPGGGYRLARPPSEIRVAEILAAVDET 76


>gi|226322283|ref|ZP_03797801.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
 gi|225209313|gb|EEG91667.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
          Length = 152

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           ++A+  C + + + +++  L KAG++ET  G  GG R+ +    IT+  +  A E +   
Sbjct: 26  ELADNVCTNPVCIRRVMGKLKKAGLIETREGMGGGYRIAKVNSDITLRQISDALENTLVK 85

Query: 89  AECFASHKIDCPLVGSCGLTSV-------LRKALNAFFDVLTQYSIE 128
           A   + +     LV S G++ V       + ++ N + + +T   +E
Sbjct: 86  ASWRSGNPDKKCLVAS-GMSVVMDELVTGMNRSCNDYLERITIQKVE 131


>gi|295689542|ref|YP_003593235.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis
          ATCC 21756]
 gi|295431445|gb|ADG10617.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
          ATCC 21756]
          Length = 158

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L+ +  Y +  +   A   D        +++IA    IS  +L ++   L + G+V +
Sbjct: 1  MRLSTKGRYAVMAMTDLAKRQDEGEGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
           RG  GG RL + + +  I D+V A +E      C
Sbjct: 61 ARGPGGGYRLAKASTETFIADIVLAVDEPLRATRC 95


>gi|237748113|ref|ZP_04578593.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379475|gb|EEO29566.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 146

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +  +  Y +++++  A+ + D    I+ I+    IS   L  + + L  AG++ET  G
Sbjct: 6  MRIATKERYALKLMVDLALQDKDEYISINSISTRQGISIASLRAVARALTAAGLIETNTG 65

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
               RL R A QI I ++++AT+  F    C
Sbjct: 66 HLYHYRLNRDAAQIPIPEILRATDGKFACTAC 97


>gi|75760212|ref|ZP_00740268.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492298|gb|EAO55458.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 149

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 4   TKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           T  +D+   I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  
Sbjct: 12  TMNSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTG 71

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           GG    R   ++ +  + + T E     +C  S+         C + S +RK L A F
Sbjct: 72  GGFIFARDLGEVNLWHIYQITSEGALQPKCPESND-------QCVVGSNMRKVLFAIF 122


>gi|158422332|ref|YP_001523624.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
          571]
 gi|158329221|dbj|BAF86706.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
          571]
          Length = 146

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          L  +LQ LV AG+++ VRG RGG  L R   ++++ ++V+  E
Sbjct: 43 LEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVE 85


>gi|58579092|ref|YP_197304.1| hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417718|emb|CAI26922.1| Hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 160

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 47/111 (42%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R+S IA    +SE +L +++  L K G++   +G  GG  L      IT+  ++++  
Sbjct: 34  PVRMSYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 93

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           E+  +  C  +          C    +     N   D L   S+E +V N 
Sbjct: 94  ENIKITRCENNSPGCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 144


>gi|325263527|ref|ZP_08130261.1| transcriptional regulator superfamily [Clostridium sp. D5]
 gi|324031236|gb|EGB92517.1| transcriptional regulator superfamily [Clostridium sp. D5]
          Length = 137

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE  C +   + KI+  L KAG+VET  G  GG    + +++  +  +  A E S FV+
Sbjct: 27  LAENICTNAARIRKIMVKLKKAGLVETKEGIEGGYLFVKNSEETDLCTIADALEFS-FVS 85

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALN 116
             + S   +   + + G+  V+    N
Sbjct: 86  SGWKSGSSELKCLIASGMAGVMEDVYN 112


>gi|182413404|ref|YP_001818470.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae
          PB90-1]
 gi|177840618|gb|ACB74870.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
          PB90-1]
          Length = 151

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          ++IA +   + + + ++L  L KAG+V   +G  GG  +    + IT+LDV +A E +
Sbjct: 28 AEIARSVDTNPVVIRRLLSALAKAGLVTAHKGATGGFAIAAAPEAITLLDVYRAVEPA 85


>gi|270290058|ref|ZP_06196284.1| transcription regulator [Pediococcus acidilactici 7_4]
 gi|270281595|gb|EFA27427.1| transcription regulator [Pediococcus acidilactici 7_4]
          Length = 168

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + R    I VL Y AI H+  P     IA +   +   + +I+  L KAG+++T  G
Sbjct: 11 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 70

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
          +     L R  +QI++LD+  + +E+
Sbjct: 71 KPQPA-LTRAPEQISLLDIFNSLDEA 95


>gi|325519578|gb|EGC98937.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 105

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 72  QITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           ++T+ +VV+ATE  F +  CFA+      C +   C L  VL  A +AFF  L ++++  
Sbjct: 9   RLTVGEVVRATEADFALVGCFAADAGSRGCVIEPQCRLKGVLAAARDAFFAELDRHTLGE 68

Query: 130 LVRNRSSIKKIFN 142
           L    SS+  +  
Sbjct: 69  LAAPASSLVSLLG 81


>gi|304385691|ref|ZP_07368035.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
 gi|304328195|gb|EFL95417.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
          Length = 160

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  + R    I VL Y AI H+  P     IA +   +   + +I+  L KAG+++T  G
Sbjct: 3  MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 62

Query: 60 RRGGVRLCRPADQITILDVVKATEES 85
          +     L R  +QI++LD+  + +E+
Sbjct: 63 KPQPA-LTRAPEQISLLDIFNSLDEA 87


>gi|126731918|ref|ZP_01747722.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
 gi|126707745|gb|EBA06807.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
          Length = 115

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
           D P    +IA     +   + + L  L +AG++ + +G  GG  L RP  +I++LD+  A
Sbjct: 2   DRPATSEEIAAMLGTNATVVRRTLAGLREAGLLSSTKGHGGGWSLSRPLTEISLLDLYSA 61

Query: 82  --TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
             + E F +A   A          +      L  A   F + L   ++  +VR
Sbjct: 62  LGSPELFAIAPDEAQPACLLARAANAATNDALHAAREVFEERLKALTVAEIVR 114


>gi|42782474|ref|NP_979721.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|42738400|gb|AAS42329.1| rrf2 family protein [Bacillus cereus ATCC 10987]
          Length = 137

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            ++ +  + + T E     +C  S+         C + S +RK L A F
Sbjct: 69  SEVNLWHIYQITSEGALQPKCPESNN-------QCIVGSNMRKVLFAIF 110


>gi|315651088|ref|ZP_07904122.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315486678|gb|EFU77026.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 144

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          N+Y      +A +   + + + KIL  L  AG++   RG  GGV + RP ++IT  DV +
Sbjct: 22 NEYKITSDFLAGSINTNPVIIRKILSQLKNAGLIMVARGT-GGVEITRPLNEITFYDVYE 80

Query: 81 ATE 83
          A +
Sbjct: 81 AID 83


>gi|57239141|ref|YP_180277.1| hypothetical protein Erum4120 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161220|emb|CAH58136.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 156

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 47/111 (42%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R+S IA    +SE +L +++  L K G++   +G  GG  L      IT+  ++++  
Sbjct: 30  PVRMSYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESIG 89

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           E+  +  C  +          C    +     N   D L   S+E +V N 
Sbjct: 90  ENIKITRCENNSPGCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 140


>gi|218898464|ref|YP_002446875.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218543993|gb|ACK96387.1| rrf2 family protein [Bacillus cereus G9842]
          Length = 137

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            ++ +  + + T E     +C  S+         C + S +RK L A F
Sbjct: 69  GEVNLWHIYQITSEGALQPKCPESND-------QCVVGSNMRKVLFAIF 110


>gi|114768830|ref|ZP_01446456.1| Rrf2 family transcriptional regulator [alpha proteobacterium
          HTCC2255]
 gi|114549747|gb|EAU52628.1| Rrf2 family transcriptional regulator [alpha proteobacterium
          HTCC2255]
          Length = 153

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+ +  Y +  L+  AI  +     + +I++   IS  +L ++   L +  I+ +VRG
Sbjct: 1  MKLSTKGRYAMIALVDLAIEGEKGLVSLGEISDRQNISLNYLEQLFLKLRRKEIITSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
            GG +L + A+ I + D++ A +E  
Sbjct: 61 PGGGYKLAKSAEAIRVSDILTAVDEDM 87


>gi|86131704|ref|ZP_01050301.1| transcriptional regulator [Dokdonia donghaensis MED134]
 gi|85817526|gb|EAQ38700.1| transcriptional regulator [Dokdonia donghaensis MED134]
          Length = 135

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T YG++ L + A   +     I +IA++  IS+ FL  IL  + KAG + + +G+ 
Sbjct: 2   LSRKTKYGLKALTFLAKKPENTTVLIQEIADSENISKKFLESILLSMRKAGYLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I I  V++  E    +  C    F  H  DCP    C L  ++ +  + 
Sbjct: 62  GGYYLIKSPEDIKISSVIRTLEGPIALLPCVSLNFYEHCDDCPKEEECSLHILMIEVRDQ 121

Query: 118 FFDVLTQYSI 127
              VL   S+
Sbjct: 122 TLKVLENKSL 131


>gi|86138298|ref|ZP_01056872.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. MED193]
 gi|85824823|gb|EAQ45024.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. MED193]
          Length = 153

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +  I++   IS  +L ++   L +A +V +VRG  GG RL R   +I ++D++ A +E+ 
Sbjct: 28  LGDISKRQNISLPYLEQLFVKLRRAELVASVRGPGGGYRLARRPSEIRVVDILSAVDET- 86

Query: 87  FVAECFASHKIDCPLVGSCGLTS 109
                 A HK      G+ G TS
Sbjct: 87  ----VDAMHKG----AGASGATS 101


>gi|304407124|ref|ZP_07388778.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344111|gb|EFM09951.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 139

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +   + + + +I+  L KAG++E+ R    G++L RP + IT LDV +A E    V 
Sbjct: 28  IAGSVNTNPVVIRRIMSLLSKAGLIES-RPGVTGMKLVRPLESITFLDVYRAVE----VP 82

Query: 90  E---CFASHKIDCP 100
           E    FA H+   P
Sbjct: 83  ENDVLFAIHQNSNP 96


>gi|251798939|ref|YP_003013670.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247546565|gb|ACT03584.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 27  ISQIAEACCISEL---------FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           +S+   AC  +EL          L ++L  L +  ++ET  GR GG RL R  + IT+ D
Sbjct: 38  LSRKPNACTSAELAGHMKSEATMLRRVLAKLAREQLLETREGRDGGYRLKRAPETITLAD 97

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           V  A      V E   S  +D   +   G    +R A     D + + ++E L
Sbjct: 98  VYLA----LRVGEPLCSGMLDTTGIHDFG--QEMRVAFMEITDEVERRTLEVL 144


>gi|159185735|ref|NP_357183.2| hypothetical protein Atu3423 [Agrobacterium tumefaciens str. C58]
 gi|159140869|gb|AAK89968.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 149

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       +++IA    I + FL  IL  L  +GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSKLPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
              +L   ++   V      ++   AG
Sbjct: 122 IATILDNMTLAQFVAKDGQDQRSIPAG 148


>gi|322419199|ref|YP_004198422.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320125586|gb|ADW13146.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    I + FL  IL  L  +GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARKYDKGPILIADLARDENIPKKFLEAILLSLKNSGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L R    IT    ++  +       C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLGRNPKDITFGQAIRVMDGPLAPVPCVSESAYAECRECHDEFSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSI 127
              +L + S+
Sbjct: 122 MASILDRTSL 131


>gi|172056218|ref|YP_001812678.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171988739|gb|ACB59661.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 160

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +++ Y + +L +       P     I++    S  +  K+L+ LV A ++ +V G +GG 
Sbjct: 8   EQSVYAMLLLTFLPEKGVLPGEF--ISQQLGASPTYFQKLLRKLVSADLLISVPGAKGGF 65

Query: 65  RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           RL    + I + D+ +A E  +S + +       +       C L+ ++ +A  ++  +L
Sbjct: 66  RLKASPETIRVFDIYEAIEGKQSLYASSGVFEDLMGIQDQNICLLSDLMAEAEQSWQSIL 125

Query: 123 TQYSIECLVRN 133
            + +I+ + R 
Sbjct: 126 KRETIDSIRRE 136


>gi|238926642|ref|ZP_04658402.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
           43531]
 gi|238885588|gb|EEQ49226.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
           43531]
          Length = 156

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 43  KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           +IL  L +AG++   RGR GG  + +    IT+ D+ +A  ES      F+ H+   P
Sbjct: 55  RILGQLRRAGLITVARGREGGAHIAKELTDITLADIFRAV-ESISGQSLFSFHENPNP 111


>gi|242372820|ref|ZP_04818394.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349472|gb|EES41073.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 143

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I VL +   H D      ++AE  C++ + L +++  L     + TVRG+ GG +  + 
Sbjct: 8   AIHVLTFLTKHKDEKFNSKELAELTCLNPVQLRRVVSVLSDQHYITTVRGKGGGYQSNQH 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIE 128
              + +     AT    FV    + H+I      S C ++  +   ++ ++D   Q  I 
Sbjct: 68  TASVNL-----ATLYQQFVLNKESKHRIYTGDTSSHCDISKHIAHTMSDYYDEEIQL-IL 121

Query: 129 CLVRNRSSIKKIFN 142
              RN+ +I+ + N
Sbjct: 122 NFYRNK-TIQDVLN 134


>gi|308071262|ref|YP_003872867.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860541|gb|ADM72329.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 157

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          ++L  LV+A ++    GR GG  L R AD IT+ D+  A E
Sbjct: 50 RVLTRLVQADLIAAREGREGGYVLTRSADHITLADIYHAIE 90


>gi|295401043|ref|ZP_06811017.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112181|ref|YP_003990497.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294976836|gb|EFG52440.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217282|gb|ADP75886.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 146

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   A+  +       IA +   + + + +++  L KAG V+ VR  
Sbjct: 1   MKISSRFTVAVHILALLALEKNAHCTSEWIAGSVNTNPVVVRRVIGQLKKAGFVQ-VRPG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCG--LTSVLRKAL 115
            GG  L +   +IT+LD+ +A  E     E F  H+     CP+  +    L  +L +A 
Sbjct: 60  TGGAFLTKDTQEITLLDIYRAV-EVVEEGELFQIHEHPNPQCPVGANIQAVLEVILHRAQ 118

Query: 116 NAFFDVLTQYSIECLV 131
            A  +VL +  +  +V
Sbjct: 119 AAMENVLQEIRLHDIV 134


>gi|310644495|ref|YP_003949254.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309249446|gb|ADO59013.1| Transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 165

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          ++L  LV+A ++    GR GG  L R AD IT+ D+  A E
Sbjct: 50 RVLTRLVQADLIAAREGREGGYVLTRSADHITLADIYHAIE 90


>gi|224541787|ref|ZP_03682326.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525284|gb|EEF94389.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
          15897]
          Length = 140

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 7  TDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +D+ I V  L+Y   + D  +   ++A+  C   + + +++  L +AG+++   G  GG 
Sbjct: 8  SDFSIAVHALVYLGKNQDLISS-DELAKHICTHPVRVRRVMIKLREAGLIKAKAGVDGGY 66

Query: 65 RLCRPADQITILDVVKATEESFF 87
          RL + AD IT+ ++ K+    + 
Sbjct: 67 RLDKEADDITLSEIAKSVSNDYI 89


>gi|57239143|ref|YP_180279.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161222|emb|CAH58138.1| hypothetical protein Erum4140 [Ehrlichia ruminantium str.
          Welgevonden]
          Length = 522

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 1  MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M +T R  Y I  ++      C   N   P R+S IA    +SE +L +++  L K G++
Sbjct: 1  MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60

Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             +G  GG  L      IT+  ++++  E+  +  C
Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 97


>gi|262066052|ref|ZP_06025664.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291380302|gb|EFE87820.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 144

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          NDY      +A +   + + + KIL  L  AG++   RG  GG+   RP  +I+  DV +
Sbjct: 22 NDYKITSDFLARSINTNPVIIRKILTQLKNAGLITVARG-TGGISPTRPLKEISFYDVYQ 80

Query: 81 ATE 83
          A E
Sbjct: 81 AIE 83


>gi|15919268|gb|AAL10759.1|AF338108_1 hypothetical iron-sulfur cofactor synthesis protein 1 [Ehrlichia
          ruminantium]
          Length = 522

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 1  MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M +T R  Y I  ++      C   N   P R+S IA    +SE +L +++  L K G++
Sbjct: 1  MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60

Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
             +G  GG  L      IT+  ++++  E+  +  C
Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 97


>gi|58579094|ref|YP_197306.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417720|emb|CAI26924.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 526

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 1   MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++      C   N   P R+S IA    +SE +L +++  L K G++
Sbjct: 5   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
              +G  GG  L      IT+  ++++  E+  +  C
Sbjct: 65  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 101


>gi|332716226|ref|YP_004443692.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062911|gb|ADY66601.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 149

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       +++IA    I + FL  IL  L  +GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSKMPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
              +L   ++   V       +   AG
Sbjct: 122 IATILDNMTLAQFVAKGGQDAQFIPAG 148


>gi|163789536|ref|ZP_02183974.1| Rrf2 family protein [Carnobacterium sp. AT7]
 gi|159875068|gb|EDP69134.1| Rrf2 family protein [Carnobacterium sp. AT7]
          Length = 156

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVR 58
           M LTK  +  + +L   +  +++    S +  +     S  ++ KI++ LV +G+  ++ 
Sbjct: 1   MKLTKGLEQAVCILAMLSTQDNHILITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE-------ESFFVAECFASHKIDCPLV-GSCGLTSV 110
           G  GG  L +  ++I +L++V+A E        S  + + F+   I  P   G   LT+ 
Sbjct: 61  GSNGGFMLAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSD--IGEPASNGEKMLTTT 118

Query: 111 LRKALNAFFDVLTQYSIECLV 131
             +A   +   L Q ++  L+
Sbjct: 119 FGEADKRYTSFLEQQTLNQLI 139


>gi|147677388|ref|YP_001211603.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146273485|dbj|BAF59234.1| predicted transcriptional regulator [Pelotomaculum
          thermopropionicum SI]
          Length = 123

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
          KAG+V +VRG +GG  L R   +IT+ DV++A E       C +  
Sbjct: 20 KAGLVRSVRGAQGGYILAREPAEITVGDVIRALEGPIAPVSCVSEE 65


>gi|317056951|ref|YP_004105418.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315449220|gb|ADU22784.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 145

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EESFFVAEC 91
           ++ + +  +L  L  AGIVET +G  GG  L +  D+IT+ D+ KA     +E  F    
Sbjct: 37  VNAVIVRNVLGQLRTAGIVETRQGS-GGAHLAKALDEITLYDIYKAVDCVDDEGLF--HF 93

Query: 92  FASHKIDCPL 101
             +   DCP+
Sbjct: 94  HENPNADCPV 103


>gi|312112835|ref|YP_004010431.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Rhodomicrobium vannielii ATCC 17100]
 gi|311217964|gb|ADP69332.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
          vannielii ATCC 17100]
          Length = 149

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
          IAE   IS   L K+L+ L + GIV+  RG  GG R      ++T+ D++
Sbjct: 30 IAEKYAISPNHLAKVLRTLGREGIVDASRGVGGGYRFVGNPKRLTLFDII 79


>gi|58617151|ref|YP_196350.1| cysteine desulfurase [Ehrlichia ruminantium str. Gardel]
 gi|58416763|emb|CAI27876.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
           ruminantium str. Gardel]
          Length = 526

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 1   MHLTKRTDYGIRVLM-----YCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++      C   N   P R+S IA    +SE +L +++  L K G++
Sbjct: 5   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
              +G  GG  L      IT+  ++++  E+  +  C
Sbjct: 65  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRC 101


>gi|184155425|ref|YP_001843765.1| transcription regulator [Lactobacillus fermentum IFO 3956]
 gi|183226769|dbj|BAG27285.1| transcription regulator [Lactobacillus fermentum IFO 3956]
          Length = 149

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R   GI +L +  ++ +       ++ +  IS + + +++  L +AG+V+T +G 
Sbjct: 1  MRASTRFSDGIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59

Query: 61 RGGVRLCRPADQITILDVVKATEES 85
              RL R   +IT+ DV  A EES
Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEES 84


>gi|78046202|ref|YP_362377.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78034632|emb|CAJ22277.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
          campestris pv. vesicatoria str. 85-10]
          Length = 157

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  +H   +  P    QIA     + + + + +  L  AG V++ RG  G
Sbjct: 2  RTDSRLSRMLHVLLHMARSPQPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHNG 61

Query: 63 GVRLCRPADQITILDVVKA 81
          G ++     Q+T+LDV +A
Sbjct: 62 GWQIGCDLAQVTLLDVHRA 80


>gi|325928913|ref|ZP_08190075.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
          perforans 91-118]
 gi|325540709|gb|EGD12289.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
          perforans 91-118]
          Length = 157

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6  RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RTD  +  +++  +H   +  P    QIA     + + + + +  L  AG V++ RG  G
Sbjct: 2  RTDSRLSRMLHVLLHMARSPQPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHNG 61

Query: 63 GVRLCRPADQITILDVVKA 81
          G ++     Q+T+LDV +A
Sbjct: 62 GWQIGCDLAQVTLLDVHRA 80


>gi|228475630|ref|ZP_04060348.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          hominis SK119]
 gi|228270412|gb|EEK11847.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          hominis SK119]
          Length = 160

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC----ISELFLFKILQPLVKAGIVET 56
          M L+   +  I VL+   I N  P +    + A      +S+ +L KI++ LVK  +V +
Sbjct: 1  MKLSTGWEQAIYVLL---ILNQLPRQSVMTSTALSKRLKVSDSYLKKIVKALVKENLVYS 57

Query: 57 VRGRRGGVRLCRPADQITILDVVKATE 83
            G+ GG  L +    IT  DV  A E
Sbjct: 58 TTGKNGGFTLRKKLKDITFYDVFLAIE 84


>gi|293364946|ref|ZP_06611663.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
           35037]
 gi|307703197|ref|ZP_07640143.1| transcriptional regulator family protein [Streptococcus oralis ATCC
           35037]
 gi|291316396|gb|EFE56832.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
           35037]
 gi|307623272|gb|EFO02263.1| transcriptional regulator family protein [Streptococcus oralis ATCC
           35037]
          Length = 145

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 12/126 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R      +++  A+  D  ++++   +A +  ++ + + K L  L KAG++   R
Sbjct: 1   MQISSRFTIATHMMIIIAMQ-DTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVAR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKAL 115
           G  GG  + +   +I++LDV +A E      + F+ H     +CP+     +  VL + L
Sbjct: 60  G-TGGTEIIKDLQEISLLDVYQAVECLGKSGKLFSFHDNPNPNCPI--GANIHGVLDQKL 116

Query: 116 NAFFDV 121
              FDV
Sbjct: 117 ---FDV 119


>gi|194335315|ref|YP_002017109.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194307792|gb|ACF42492.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 154

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LTK TDY IR L+  A           IA    I   FL  +LQ +++  ++ +  G +G
Sbjct: 4  LTKNTDYAIRALLALAARKGSYVSARSIATEHDIPYQFLRGLLQEMIRHDLIVSKEGVQG 63

Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          G  + +  D I++  +++  +    ++EC    +I
Sbjct: 64 GFMMKKDPDTISVTQLIEIFQGKVQMSECMFRKQI 98


>gi|218462085|ref|ZP_03502176.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
          Length = 117

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          AGI++TV G RGG +L +  ++I++LD++ A E
Sbjct: 3  AGILDTVPGPRGGYKLAKAPEEISLLDILLAVE 35


>gi|225569272|ref|ZP_03778297.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
           15053]
 gi|225571816|ref|ZP_03780686.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
           15053]
 gi|225159528|gb|EEG72147.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
           15053]
 gi|225162071|gb|EEG74690.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
           15053]
          Length = 143

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H D      ++AE  C +   + K++  L K  +V T  G +GG  +   A  +T+  V 
Sbjct: 17  HKDTVVSSEELAENICTNPARVRKVMAKLKKKALVGTKEGIKGGYHMAADASAVTLRCVC 76

Query: 80  KATEESFFVAEC-FASHKIDCPLV-GSCGLTSVLRKALNAF-FDVLTQYSIE 128
            A EE    A     S  +DC +  G  G+   +   +NA   D L   +IE
Sbjct: 77  DALEEEVIKASWKSGSIDMDCMIASGMAGMMDGIYSEMNAQCKDYLETVTIE 128


>gi|322387140|ref|ZP_08060750.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
 gi|321141669|gb|EFX37164.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
          Length = 143

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S  +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQISSRFTIATHMLVIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKADLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCG--LTSVLRKA 114
             GG  + +  + I++LD+ +A E      + F+ H     DCP+  +    L   L K 
Sbjct: 61  T-GGAEIIKELEDISLLDIYQAVECLGKTGQLFSFHDNPNPDCPVGANIHGVLDEKLDKI 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  + L+Q S+  +V +
Sbjct: 120 QEAMEEELSQTSLARVVAD 138


>gi|52142135|ref|YP_084695.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51975604|gb|AAU17154.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           cereus E33L]
          Length = 137

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 69  EEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|170754322|ref|YP_001780964.1| putative transcriptional regulator [Clostridium botulinum B1 str.
          Okra]
 gi|169119534|gb|ACA43370.1| putative transcriptional regulator [Clostridium botulinum B1 str.
          Okra]
          Length = 137

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV+++ +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1  MKITQEADYALRVILHLS-KLGYGERVEARIISEQEVLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          G +GG  L +    I + DV++A +    +  C 
Sbjct: 60 GVKGGYALNKQPKDINLKDVIEAIDGPICINRCI 93


>gi|15893411|ref|NP_346760.1| hypothetical protein CA_C0115 [Clostridium acetobutylicum ATCC
          824]
 gi|15022941|gb|AAK78100.1|AE007524_5 Uncharacterized protein, Yje/RRF2 family [Clostridium
          acetobutylicum ATCC 824]
 gi|325507523|gb|ADZ19159.1| Conserved hypothetical protein [Clostridium acetobutylicum EA
          2018]
          Length = 137

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV++Y +    Y  +I  + IAE   +   FL K+L+ L+K+GIV++ R
Sbjct: 1  MRITQEADYSMRVVLYLSKLG-YEQKIDAATIAEHEKLPLRFLLKLLRKLIKSGIVKSYR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
          G +GG  L +    I + +V++A +    V  C   
Sbjct: 60 GVKGGYALNKYPKDINLREVIEAIDGPICVNRCLTD 95


>gi|313899650|ref|ZP_07833153.1| transcriptional regulator [Clostridium sp. HGF2]
 gi|312955265|gb|EFR36930.1| transcriptional regulator [Clostridium sp. HGF2]
          Length = 145

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H +      ++A++ C +   + K++  L KAG++ET  G  GG  L   A  I + D+ 
Sbjct: 17  HRNTKVSSEELAKSICTNPARIRKVMAKLKKAGLLETREGNSGGYELHGDAAAIRLSDLA 76

Query: 80  KATEESFFVAECFASHKIDCPLVGSCGLTSV---LRKALNAF-FDVLTQYSIE 128
           +A ++       + S  ++   + + G+ +V   L  +LN      L+Q +IE
Sbjct: 77  QALQQP-LTKSGWRSGTLNTYCMIATGMGTVVDTLEASLNEVCMQSLSQITIE 128


>gi|229140014|ref|ZP_04268577.1| Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228643420|gb|EEK99688.1| Rrf2 [Bacillus cereus BDRD-ST26]
          Length = 116

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+E+ C+  + + K+L  L K   +++  G  GG    R  D++ +  + + T E     
Sbjct: 7   ISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSEGALQP 66

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +C  S+         C + S +RK L   F
Sbjct: 67  KCPESND-------QCIVGSNMRKVLFTIF 89


>gi|319795510|ref|YP_004157150.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
          EPS]
 gi|315597973|gb|ADU39039.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
          EPS]
          Length = 181

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  + +  ++  A+H    P  ++ I+    +S  +L  +   L +  +VE+ RG
Sbjct: 1  MRLTTKGRFAVTAMIDIALHGRSGPVTLASISLRQRVSLSYLELLFAKLRRNDLVESTRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
            GG  L R A  I++ D+V + E+
Sbjct: 61 PGGGYSLSRKAALISVADIVLSIED 85


>gi|56962182|ref|YP_173905.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56908417|dbj|BAD62944.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 303

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLC----RPADQITILDVVK 80
           I ++AE+  +S   + K +Q L KAG+++T  VRG+ G  ++C    R A QI   +   
Sbjct: 37  IKELAESQQVSSAIMTKHVQKLEKAGLIDTTHVRGKAGVQKMCSLRVRHA-QIAFPNKEN 95

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTS 109
               +F  +     H  D  +  +CGL +
Sbjct: 96  GPTRAFHESHVSVGHFTDFYVEPTCGLAT 124


>gi|167646548|ref|YP_001684211.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167348978|gb|ABZ71713.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 159

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVE 55
          M L+ +  Y +  +   A   D         +++IA    IS  +L ++   L + G+V 
Sbjct: 1  MRLSTKGRYAVMAMTDLARRQDEAEGGRAVALAEIAARQQISLSYLEQLFARLRRKGLVV 60

Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
          + RG  GG RL     Q  I D+V A +E      C  S
Sbjct: 61 SARGPGGGYRLALDPAQTRISDIVLAVDEPLRATRCGLS 99


>gi|302875321|ref|YP_003843954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
 gi|307688174|ref|ZP_07630620.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
          cellulovorans 743B]
 gi|302578178|gb|ADL52190.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
          Length = 143

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG++ ++  A ++ +    I  I E   +SE +L +I   L K GI+   +G
Sbjct: 1  MKISTKGIYGLKAIVDLACYSVNEVVTIKSICERQGLSERYLEQIFSLLRKNGIIVGRKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATE 83
           +GG  L +   ++T+ +++ A E
Sbjct: 61 SQGGYTLAKKPKELTVYEILTALE 84


>gi|125623396|ref|YP_001031879.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|806485|gb|AAC41452.1| ORF156 [Lactococcus lactis subsp. cremoris]
 gi|124492204|emb|CAL97133.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070144|gb|ADJ59544.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 156

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A    +S  +L KI++ LV  G++ +  G+ GG  L +    I+  DV  A E      
Sbjct: 31  LANRLKVSPSYLKKIIKSLVDEGLLRSTTGKNGGFSLNKDLHDISFYDVFLAIEGR---G 87

Query: 90  ECFASHKIDCPLVGS-------CGLTSVLRKALNAFFDVLTQYSI 127
             F S  +    +G+       C +T+ L +  N     L+  S+
Sbjct: 88  RIFQSQGLLQNFIGAESGKAQHCAITTALDEIENTLVRTLSNVSL 132


>gi|28379895|ref|NP_786787.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254558035|ref|YP_003064452.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300769029|ref|ZP_07078919.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308182109|ref|YP_003926237.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28272736|emb|CAD65665.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|83778489|gb|ABC47132.1| putative transcriptional regulator [Lactobacillus plantarum]
 gi|254046962|gb|ACT63755.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300493441|gb|EFK28619.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047600|gb|ADO00144.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 141

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              ++ Y A+H D   +   IA +       + +++  L KAG++ +VRG       C P
Sbjct: 9   ATHIMAYIALHTDDQLKSEHIASSLNTDPTMVRRMMSKLRKAGLLTSVRGVARPTLACSP 68

Query: 70  ADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            D IT+ D+  A   + +F          +D     +C + SV+ + +  ++
Sbjct: 69  ND-ITLKDIYVAVVAKRNFL--------NVDHNTSETCPVGSVIPRVMEKYY 111


>gi|163731797|ref|ZP_02139244.1| transcriptional regulator, putative [Roseobacter litoralis Och
          149]
 gi|161395251|gb|EDQ19573.1| transcriptional regulator, putative [Roseobacter litoralis Och
          149]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +  IA    IS  +L ++   L +A +V +VRG  GG RL R    I +++++ A +E+
Sbjct: 18 LGDIATRQAISLAYLEQLFVKLRRADLVTSVRGPGGGYRLKRSPSDIRVVEILSAVDET 76


>gi|254480074|ref|ZP_05093322.1| rrf2 family protein (putative transcriptional regulator) [marine
           gamma proteobacterium HTCC2148]
 gi|214039636|gb|EEB80295.1| rrf2 family protein (putative transcriptional regulator) [marine
           gamma proteobacterium HTCC2148]
          Length = 144

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H    P  ++ I+    IS  +L ++   L +  +V +VRG  GG RL R   +
Sbjct: 1   MLDLALHGSSGPVSLADISGRQDISLSYLEQLFAKLRRNDLVTSVRGPGGGYRLSRHTGE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  +V A  E+     C  +   DC     C    +     +     L+Q S+  LV 
Sbjct: 61  IFVAQIVDAVNEAVDATGCGGTS--DCQQGEVCLTHHLWCDLSDQIHGFLSQISLANLVE 118

Query: 133 NRSSIKKI 140
            R  +K I
Sbjct: 119 -RKEVKHI 125


>gi|169350557|ref|ZP_02867495.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM
          1552]
 gi|169292877|gb|EDS75010.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM
          1552]
          Length = 146

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          +DY      +A +  ++ + + KIL  L  AG+VE  RG  GG  + +  +QI   D+  
Sbjct: 22 DDYKITSDFLAASVNVNPVIIRKILSQLKNAGLVEVKRG-SGGATIAKELEQINFYDIYS 80

Query: 81 ATE 83
          A E
Sbjct: 81 AVE 83


>gi|325289388|ref|YP_004265569.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964789|gb|ADY55568.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 155

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    + +LM  A   D Y    S ++++  ++ + +  I   L KA I++   G
Sbjct: 1   MRASTRFAIAVHILMLTAAFQDKYKITSSMLSDSTGVNAVIIRNIFSKLKKAKIIQVSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
              G++L +  +QI++ D+      EE   V     +   DCP+     +T +L K
Sbjct: 61  T-SGIKLIKKPEQISLFDIYATVEIEEPINVLSIHQNIPCDCPI--GISVTDILMK 113


>gi|148379309|ref|YP_001253850.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|153932711|ref|YP_001383685.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 19397]
 gi|153936293|ref|YP_001387233.1| putative transcriptional regulator [Clostridium botulinum A str.
          Hall]
 gi|153940905|ref|YP_001390690.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|168179993|ref|ZP_02614657.1| putative transcriptional regulator [Clostridium botulinum NCTC
          2916]
 gi|148288793|emb|CAL82877.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152928755|gb|ABS34255.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 19397]
 gi|152932207|gb|ABS37706.1| putative transcriptional regulator [Clostridium botulinum A str.
          Hall]
 gi|152936801|gb|ABS42299.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|182669084|gb|EDT81060.1| putative transcriptional regulator [Clostridium botulinum NCTC
          2916]
 gi|295318764|gb|ADF99141.1| putative transcriptional regulator [Clostridium botulinum F str.
          230613]
 gi|322805649|emb|CBZ03214.1| rrf2 family transcriptional regulator [Clostridium botulinum
          H04402 065]
          Length = 137

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV+++ +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1  MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          G +GG  L +    I + DV++A +    +  C 
Sbjct: 60 GVKGGYALNKQPKDINLKDVIEAIDGPICINRCI 93


>gi|241889351|ref|ZP_04776652.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
          ATCC 10379]
 gi|241863894|gb|EER68275.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
          ATCC 10379]
          Length = 167

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 1  MHLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          MHLTK T+  I   V++Y    + + N   +I++   IS  +L KI++ LV   +V+   
Sbjct: 1  MHLTKSTEQAICIMVMLYLQDRHVFLNS-KEISQRLNISPTYLKKIMRKLVVNDLVKANT 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
          G  GG +  +   ++T+ DV  A  +     E FA
Sbjct: 60 GIGGGYK-YKSNKKVTLYDVYVALNDE---VEIFA 90


>gi|237794684|ref|YP_002862236.1| putative transcriptional regulator [Clostridium botulinum Ba4
          str. 657]
 gi|229261414|gb|ACQ52447.1| putative transcriptional regulator [Clostridium botulinum Ba4
          str. 657]
          Length = 137

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV+++ +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1  MKITQEADYALRVILHLS-KLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          G +GG  L +    I + DV++A +    +  C 
Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRCI 93


>gi|325125820|gb|ADY85150.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 149

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + K  +  I VL+  A+  D  P +   ++    +S+ +L KIL  L K G++     
Sbjct: 1   MKINKSVEQAIYVLLILALQKDGEPLKSRVLSTHLKVSDSYLKKILMKLKKGGLIAASAS 60

Query: 60  RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
           + GG +L  P   I+I DV  A   T++   ++        D   V      ++    +A
Sbjct: 61  KNGGYQLAWPIGAISIKDVFTALQLTDDQLELSHLAQYIFPDPNHVAQSEQEISQAFHQA 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
             AF+D L Q+ ++ L+++ +
Sbjct: 121 FAAFYDQLGQFKLDRLLKDDA 141


>gi|116747793|ref|YP_844480.1| hypothetical protein Sfum_0345 [Syntrophobacter fumaroxidans MPOB]
 gi|116696857|gb|ABK16045.1| protein of unknown function DUF402 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 38  ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS--- 94
           +LFL  IL PL KAG+V     R  G +  RP + +    +V AT ES      F+    
Sbjct: 156 DLFLQAILAPLEKAGVVRVEHVRPSG-KSMRPREGV----LVNATPESILFRRSFSKGGT 210

Query: 95  -HKIDCPL-VGSCGLTSV 110
              +D P+  G  GLT++
Sbjct: 211 YDGLDVPIQAGDYGLTTI 228


>gi|168184147|ref|ZP_02618811.1| putative transcriptional regulator [Clostridium botulinum Bf]
 gi|182672686|gb|EDT84647.1| putative transcriptional regulator [Clostridium botulinum Bf]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV+++ +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1  MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
          G +GG  L +    I + DV++A +    +  C 
Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRCI 93


>gi|319938822|ref|ZP_08013186.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
 gi|319811872|gb|EFW08138.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
          Length = 145

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +A++  ++ + + KIL  L  A ++   RG RGG  + +    IT+LDV +A E      
Sbjct: 31  LADSVGVNPVIIRKILSQLKSADLISVARG-RGGAIIRKDLKDITLLDVYQAVESLGKSG 89

Query: 90  ECFASHKIDCP 100
           + F+ H+   P
Sbjct: 90  QLFSFHEHPNP 100


>gi|170760233|ref|YP_001786721.1| putative transcriptional regulator [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169407222|gb|ACA55633.1| putative transcriptional regulator [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVR 58
          M +T+  DY +RV+++ +    Y  R+    I+E   +   FL K+L+ L K+GIV + R
Sbjct: 1  MKITQEADYALRVILHLSKLG-YGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          G +GG  L +    I + DV++A +    +  C
Sbjct: 60 GVKGGYALNKQPKDINLRDVIEAIDGPICINRC 92


>gi|324991473|gb|EGC23406.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK353]
          Length = 164

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 15  MQISSRFTIATHMLIVLALEGKKQKLTSDILASSVGVNPVIIRKTLSQLKNAGMITVARG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 75  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 118


>gi|148244681|ref|YP_001219375.1| Fe-S cluster-containing transcription factor [Candidatus
          Vesicomyosocius okutanii HA]
 gi|146326508|dbj|BAF61651.1| Fe-S cluster-containing transcription factor [Candidatus
          Vesicomyosocius okutanii HA]
          Length = 139

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A ++   P  +  I++   IS  +L ++   L +A +V++VRG
Sbjct: 1  MQLTTKGRYAVTAILDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L   A  I +  +++A +E+  +  C
Sbjct: 61 PGGGYLLDAKACDINLTQIIEAVDENIDLRRC 92


>gi|116328585|ref|YP_798305.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331314|ref|YP_801032.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121329|gb|ABJ79372.1| Transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125003|gb|ABJ76274.1| Transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 139

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T R    I +L   ++         ++AE+   + + + KIL  L   GIV    G  G
Sbjct: 1   MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNRGIVRNQMGPNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  L +    I + ++  A +E  F         +C   H I  P+     L+ V  KA 
Sbjct: 61  GYVLAKTPSAINLKEIYVAIDEKIFQMHSKSPNKKCICGHAIQ-PI-----LSKVYEKAQ 114

Query: 116 NAFFDVLTQYSIECLVR 132
               D L   +++ + R
Sbjct: 115 KVLEDELGSTNLDLIAR 131


>gi|190576325|ref|YP_001974170.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|190014247|emb|CAQ47891.1| putative transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 138

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P    Q+A       + + ++L  L KAG+V + RG  GG  L R A  IT+ D+  A  
Sbjct: 10  PRTSEQLASCLPTHPVVIRRLLAQLHKAGLVRSTRGHGGGSLLARDAAAITLHDIYLAVG 69

Query: 84  ESFFVAECFASHKIDCPL 101
               V          CP+
Sbjct: 70  APPLVQVGARDSGGGCPI 87


>gi|331082894|ref|ZP_08332015.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400035|gb|EGG79688.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 311

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 43  KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV 102
           +I+  L K   VE V+G+ GG RL +      I D+++ TE       C   +   C   
Sbjct: 213 RIMPVLSKNHYVEGVQGKGGGYRLTKEPKDYRIGDILRLTEGQLVPVACLECNAETCKRA 272

Query: 103 GSCGLTSVLRK---ALNAFFDVLT 123
             C    + ++    +N +FD +T
Sbjct: 273 NICKTLPMWKEFHHMVNNYFDNIT 296


>gi|324327310|gb|ADY22570.1| rrf2 family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            ++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 69  SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|167621798|ref|YP_001676583.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167351539|gb|ABZ74269.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 142

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC---ISELFLFKILQPLVKAGIVETV 57
          M  ++R    +  L+Y A     P++  +  E  C    S + + ++   LVKAG++ + 
Sbjct: 1  MSESQRFPTAVHALVYLAHSKATPHQPVRSVELACSVNASHVGVRRVTARLVKAGLIGSQ 60

Query: 58 RGRRGGVRLCRPADQITILDVVKA 81
           GR+GG  L    ++IT+  V++A
Sbjct: 61 DGRKGGAWLRADPERITLDQVLEA 84


>gi|288956989|ref|YP_003447330.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909297|dbj|BAI70786.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 312

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 6   RTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R DYG R   V+ Y A H D P  + ++AE  C S     ++ + +      ET+R    
Sbjct: 30  RLDYGDRTERVVAYIADHLDDPLDLERLAEVACFSPYHFHRVYRAITGETAAETLR---- 85

Query: 63  GVRLCRPA-----DQITILDVVK 80
            +RL R A     D I I D+ +
Sbjct: 86  RLRLHRAAGDLVRDSIAIPDIAR 108


>gi|196042814|ref|ZP_03110053.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225865368|ref|YP_002750746.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|196026298|gb|EDX64966.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225790074|gb|ACO30291.1| rrf2 family protein [Bacillus cereus 03BB102]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            ++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 69  SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|292654129|ref|YP_003534027.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
           volcanii DS2]
 gi|291369713|gb|ADE01941.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
           volcanii DS2]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              VL   A+ +D      ++A +   + + + ++L  L +A +V++ RG  GG  L   
Sbjct: 10  ATHVLTNLAVRSDERLSSDRLAWSVNTNPVVIRQLLCSLREADLVDSKRGPTGGFTLAHE 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG------LTSVLRKALNAFFDVLT 123
            D IT+ D+ +A E+    AE F  H  +     + G      L  +L  A+ A  D L 
Sbjct: 70  PDAITLRDIYEAVED----AEPFCFHTNEPNDECTVGEHIQPVLGELLEPAIQAMLDELD 125

Query: 124 QYSI 127
             ++
Sbjct: 126 SVTV 129


>gi|224370917|ref|YP_002605081.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
          HRM2]
 gi|223693634|gb|ACN16917.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
          HRM2]
          Length = 143

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 41/84 (48%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + +    ++ L + A H+  P   + I+    I+   L + L  L KAGI+ T++G 
Sbjct: 1  MSASSKLSNSVKALCFLAKHHPVPQNSACISMDTGINASKLRRHLSALAKAGILRTIQGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEE 84
           GG  L +  + I + ++  A E+
Sbjct: 61 AGGFVLKKAPEDIHLQEIYCALED 84


>gi|268610344|ref|ZP_06144071.1| hypothetical protein RflaF_12696 [Ruminococcus flavefaciens FD-1]
          Length = 145

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT----EES 85
           ++ +  ++ + +  +L  L   GIVET +G  GG  L +  D+IT+ D+ KA     +E 
Sbjct: 31  LSGSTGVNAVIVRNVLGQLRNTGIVETRQGS-GGAHLAKALDEITLYDIYKAVDCVDDEG 89

Query: 86  FFVAECFASHKIDCPL 101
            F      +   DCP+
Sbjct: 90  LF--HFHENPNADCPV 103


>gi|318041251|ref|ZP_07973207.1| transcriptional regulator, BadM/Rrf2 family protein [Synechococcus
           sp. CB0101]
          Length = 148

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 1   MHLTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +R+    ++ L+  A        ++ IA A  +    L ++L  L +AG+VE  RG
Sbjct: 1   MSLLRRSGQQALQALLELAEAPQQWRSVNDIAAAQALPAPMLEQLLLQLRRAGLVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL R    I + +V+ A      + E  A    D        L S+ R+   A  
Sbjct: 61  RLGGYRLQRQPAAIPVAEVLAAVGADIQLVEPDAP---DSNQAEEQVLRSMARRLQRAME 117

Query: 120 DVLTQYSIECLV 131
             L Q+++E L+
Sbjct: 118 RELMQFNLEELL 129


>gi|224008993|ref|XP_002293455.1| vacuolar proton pump alpha subunit [Thalassiosira pseudonana
           CCMP1335]
 gi|220970855|gb|EED89191.1| vacuolar proton pump alpha subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 621

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           DQ  +++V K   E F     F  H   CPL  + G+ SV+
Sbjct: 508 DQKVVMEVAKLIREDFLAQNAFTEHDFTCPLPKTVGMLSVI 548


>gi|90420066|ref|ZP_01227974.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335400|gb|EAS49150.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 155

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P    Q+A+A   + + + +I+  L   G+V + +G  GG  + +  
Sbjct: 11  LHVLLHMA-ETDGPVTSEQLAKAMQTNPVVIRRIMAGLRNQGLVRSTKGHGGGWTIAKEL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
             +T+ D+ +A     F A     ++ + P    C    ++ +A+NA  D
Sbjct: 70  STVTLRDIYEALGSPEFFA---MGNRTEAP---GC----LVEEAVNAAMD 109


>gi|257065288|ref|YP_003144960.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256792941|gb|ACV23611.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 146

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R      +L+  A+  +++    + +A +  ++ + +  +L  L  AGIV TV  
Sbjct: 1   MRFSSRLPVATHILLCIALLGHEHKTTSTFLAGSVGVNPVIVRNVLGQLKAAGIV-TVEP 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
             GG  L R  ++IT+ DV++A E+   V         +CP+
Sbjct: 60  GVGGASLARAPEEITLRDVLEAVEDDAGVFRMHEHPSPECPV 101


>gi|325687289|gb|EGD29311.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK72]
          Length = 160

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 71  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114


>gi|118602585|ref|YP_903800.1| BadM/Rrf2 family transcriptional regulator [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
 gi|118567524|gb|ABL02329.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Ruthia
          magnifica str. Cm (Calyptogena magnifica)]
          Length = 139

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M LT +  Y +  ++  A  ND   P  +  I++   IS  +L ++   L +A +V++VR
Sbjct: 1  MQLTTKGRYAVIAMLDLA-SNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVR 59

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC 91
          G  GG  L      I +  +++A +E+  +  C
Sbjct: 60 GPGGGYLLDAKVSDINLTQIIEAVDENIDLRRC 92


>gi|296535176|ref|ZP_06897398.1| iron-sulfur cluster assembly transcription factor IscR
          [Roseomonas cervicalis ATCC 49957]
 gi|296264504|gb|EFH10907.1| iron-sulfur cluster assembly transcription factor IscR
          [Roseomonas cervicalis ATCC 49957]
          Length = 154

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          +LQ L +AGI+ + RG +GG RL R A  IT+ ++  A
Sbjct: 47 VLQALSRAGILGSTRGPKGGYRLGRAARDITLAELAAA 84


>gi|304407788|ref|ZP_07389439.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343271|gb|EFM09114.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 43  KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPL 101
           K++  L K+G V T  G  GG RL    +++++ D+ +   + S   + C    ++DC +
Sbjct: 41  KVMSVLRKSGYVATREGAGGGYRLTAEPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDC-V 99

Query: 102 VGSC------GLTSVLRKALNAFFDVLT 123
           VGS       G+     K L   F+ +T
Sbjct: 100 VGSNMKQVMFGIFCTAEKRLETHFNAIT 127


>gi|325696155|gb|EGD38046.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK160]
          Length = 149

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|24215428|ref|NP_712909.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657165|ref|YP_001251.1| hypothetical protein LIC11283 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196551|gb|AAN49927.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600403|gb|AAS69888.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 139

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 21/135 (15%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T R    I +L   ++         ++AE+   + + + KIL  L   GIV    G  G
Sbjct: 1   MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNQGIVRNQMGPNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPL-------------- 101
           G  L +    I + ++ +A +E  F         +C   H I   L              
Sbjct: 61  GYVLAKTPASINLKEIYEAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEEE 120

Query: 102 VGSCGLTSVLRKALN 116
           +GS  L S+ ++ LN
Sbjct: 121 LGSTDLDSITKEILN 135


>gi|332367121|gb|EGJ44857.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1059]
          Length = 170

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 81  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124


>gi|325690774|gb|EGD32775.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK115]
 gi|332358975|gb|EGJ36796.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK49]
          Length = 169

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 81  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124


>gi|332358706|gb|EGJ36529.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK355]
          Length = 150

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|282925438|ref|ZP_06333093.1| LOW QUALITY PROTEIN: conserved hypothetical protein
          [Staphylococcus aureus A9765]
 gi|282592532|gb|EFB97543.1| LOW QUALITY PROTEIN: conserved hypothetical protein
          [Staphylococcus aureus A9765]
          Length = 116

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|313905671|ref|ZP_07839032.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
          cellulosolvens 6]
 gi|313469495|gb|EFR64836.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
          cellulosolvens 6]
          Length = 146

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          +A +   + + + KIL  L  AG++  +RG  GG+ L R    IT  DV +A E
Sbjct: 31 LAASINTNPVIIRKILTQLKNAGLINVIRG-TGGIELTRDLKDITFYDVYQAIE 83


>gi|322385029|ref|ZP_08058679.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
 gi|321270939|gb|EFX53849.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
          Length = 149

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEITKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|327460982|gb|EGF07315.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1057]
          Length = 170

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 81  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124


>gi|228922119|ref|ZP_04085429.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228940467|ref|ZP_04103036.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228953676|ref|ZP_04115716.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228959598|ref|ZP_04121279.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228979946|ref|ZP_04140265.1| Rrf2 [Bacillus thuringiensis Bt407]
 gi|229047069|ref|ZP_04192691.1| Rrf2 [Bacillus cereus AH676]
 gi|229070848|ref|ZP_04204076.1| Rrf2 [Bacillus cereus F65185]
 gi|229080611|ref|ZP_04213131.1| Rrf2 [Bacillus cereus Rock4-2]
 gi|229110826|ref|ZP_04240389.1| Rrf2 [Bacillus cereus Rock1-15]
 gi|229128677|ref|ZP_04257655.1| Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229145982|ref|ZP_04274361.1| Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229151583|ref|ZP_04279785.1| Rrf2 [Bacillus cereus m1550]
 gi|229179684|ref|ZP_04307034.1| Rrf2 [Bacillus cereus 172560W]
 gi|229191500|ref|ZP_04318483.1| Rrf2 [Bacillus cereus ATCC 10876]
 gi|228591980|gb|EEK49816.1| Rrf2 [Bacillus cereus ATCC 10876]
 gi|228603790|gb|EEK61261.1| Rrf2 [Bacillus cereus 172560W]
 gi|228631827|gb|EEK88454.1| Rrf2 [Bacillus cereus m1550]
 gi|228637590|gb|EEK94041.1| Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228654870|gb|EEL10730.1| Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228672705|gb|EEL27986.1| Rrf2 [Bacillus cereus Rock1-15]
 gi|228702712|gb|EEL55178.1| Rrf2 [Bacillus cereus Rock4-2]
 gi|228712238|gb|EEL64185.1| Rrf2 [Bacillus cereus F65185]
 gi|228724258|gb|EEL75593.1| Rrf2 [Bacillus cereus AH676]
 gi|228779785|gb|EEM28033.1| Rrf2 [Bacillus thuringiensis Bt407]
 gi|228800090|gb|EEM47026.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805910|gb|EEM52489.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228819232|gb|EEM65288.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228837535|gb|EEM82866.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 116

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+E+  +  + + K+L  L K   +++  G  GG    R  D+I +  + + T E     
Sbjct: 7   ISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSEGALQP 66

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +C  S+         C + S +RK L A F
Sbjct: 67  KCPESNN-------QCVVGSNMRKVLFAIF 89


>gi|323525697|ref|YP_004227850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          CCGE1001]
 gi|323382699|gb|ADX54790.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1001]
          Length = 151

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQEGTPLSSDMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QI++LDV +A ++    A+ FA H+
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92


>gi|170696438|ref|ZP_02887565.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          graminis C4D1M]
 gi|170138643|gb|EDT06844.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          graminis C4D1M]
          Length = 151

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QI++LDV +A ++    A+ FA H+
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92


>gi|88801410|ref|ZP_01116938.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
           irgensii 23-P]
 gi|88782068|gb|EAR13245.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
           irgensii 23-P]
          Length = 137

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L +     N  P  I+ I+++  IS  FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALTFLGKQENRLPVSIATISKSENISLKFLESILLTLRKNGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGL 107
           GG  L +   +I +  +++  E    +  C    F     DCP   +C +
Sbjct: 62  GGYYLLKEPSEIPMASIMRILEGPISMVPCVSLNFYEKCDDCPDENACSV 111


>gi|172057569|ref|YP_001814029.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990090|gb|ACB61012.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 138

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    + +L   A H D       IA +   + + + +++  L +AG++ TV G+ G
Sbjct: 2   INSRLAVSVHILALIATHPDQALSSDYIAGSVNTNPVVIRRLIGSLRQAGLLSTVAGKSG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
                 P D IT+L + +A E        F+ H+   P   +C +   ++  LN  F
Sbjct: 62  ATLTKDPQD-ITLLMIYRAVEPK---ETLFSMHEQPNP---ACPVGRDIQSTLNQSF 111


>gi|258422782|ref|ZP_05685685.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257847013|gb|EEV71024.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|283469886|emb|CAQ49097.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          ST398]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|327470615|gb|EGF16071.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 149

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEIVKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|324993824|gb|EGC25743.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK405]
 gi|324994855|gb|EGC26768.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK678]
 gi|327474699|gb|EGF20104.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK408]
 gi|328946722|gb|EGG40860.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1087]
          Length = 159

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 71  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114


>gi|323351192|ref|ZP_08086848.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           VMC66]
 gi|322122416|gb|EFX94127.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           VMC66]
          Length = 169

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 81  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 124


>gi|302332307|gb|ADL22500.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus JKD6159]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|15923585|ref|NP_371119.1| hypothetical protein SAV0595 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15926273|ref|NP_373806.1| hypothetical protein SA0552 [Staphylococcus aureus subsp. aureus
          N315]
 gi|148267055|ref|YP_001245998.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150393103|ref|YP_001315778.1| hypothetical protein SaurJH1_0633 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156978924|ref|YP_001441183.1| hypothetical protein SAHV_0593 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253316612|ref|ZP_04839825.1| hypothetical protein SauraC_10785 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253731206|ref|ZP_04865371.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_TCH959]
 gi|255005388|ref|ZP_05143989.2| hypothetical protein SauraM_02935 [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|258420350|ref|ZP_05683295.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258436521|ref|ZP_05689179.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258442345|ref|ZP_05691108.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446283|ref|ZP_05694441.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|258450058|ref|ZP_05698155.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258455097|ref|ZP_05703059.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|269202216|ref|YP_003281485.1| hypothetical protein SAAV_0558 [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282895034|ref|ZP_06303256.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
 gi|295406974|ref|ZP_06816777.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
 gi|297246135|ref|ZP_06929990.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
 gi|13700487|dbj|BAB41784.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246363|dbj|BAB56757.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740124|gb|ABQ48422.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus JH9]
 gi|149945555|gb|ABR51491.1| protein of unknown function UPF0074 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|156721059|dbj|BAF77476.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724947|gb|EES93676.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_TCH959]
 gi|257843664|gb|EEV68068.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257848792|gb|EEV72778.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852074|gb|EEV76006.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854877|gb|EEV77822.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|257856677|gb|EEV79581.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257862737|gb|EEV85503.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|262074506|gb|ACY10479.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ED98]
 gi|282762617|gb|EFC02755.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
 gi|285816296|gb|ADC36783.1| hypothetical protein SA2981_0572 [Staphylococcus aureus 04-02981]
 gi|294968205|gb|EFG44231.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
 gi|297176981|gb|EFH36237.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
 gi|312829090|emb|CBX33932.1| transcriptional regulator family protein [Staphylococcus aureus
          subsp. aureus ECT-R 2]
 gi|315128897|gb|EFT84895.1| hypothetical protein CGSSa03_00785 [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|329724366|gb|EGG60877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          21172]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|325694827|gb|EGD36732.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK150]
          Length = 160

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 71  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 114


>gi|327490256|gb|EGF22044.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1058]
          Length = 149

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEIAKDLKGISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|57650052|ref|YP_185526.1| hypothetical protein SACOL0641 [Staphylococcus aureus subsp.
          aureus COL]
 gi|151220770|ref|YP_001331592.1| hypothetical protein NWMN_0558 [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|161508834|ref|YP_001574493.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|221141885|ref|ZP_03566378.1| hypothetical protein SauraJ_09680 [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|253732966|ref|ZP_04867131.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TCH130]
 gi|258450951|ref|ZP_05699003.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|284023610|ref|ZP_06378008.1| hypothetical protein Saura13_03432 [Staphylococcus aureus subsp.
          aureus 132]
 gi|304381805|ref|ZP_07364452.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|57284238|gb|AAW36332.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|150373570|dbj|BAF66830.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|160367643|gb|ABX28614.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253729146|gb|EES97875.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TCH130]
 gi|257861371|gb|EEV84180.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|269940167|emb|CBI48543.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|302750485|gb|ADL64662.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304339591|gb|EFM05538.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|315196522|gb|EFU26871.1| hypothetical protein CGSSa01_02231 [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320139838|gb|EFW31700.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|329313316|gb|AEB87729.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus
          aureus subsp. aureus T0131]
 gi|329729739|gb|EGG66140.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          21193]
 gi|329729854|gb|EGG66246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          21189]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|329847412|ref|ZP_08262440.1| transcriptional regulator family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842475|gb|EGF92044.1| transcriptional regulator family protein [Asticcacaulis
           biprosthecum C19]
          Length = 151

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVET 56
           M  ++R       L Y A  N Y        S +A +   + + + ++   L KAG+V T
Sbjct: 1   MSDSQRFPVAAHTLAYLAHRNAYSREAAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVAT 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKAL 115
             G  GG  L +  + I + +V++A      V  C  +H    P+    C ++  + KA+
Sbjct: 61  CSGVAGGAWLLKRPEDIRLDEVLRA------VNGC--AHLGSAPIGAEGCPVSQAIPKAV 112

Query: 116 NAFFDVLTQYSIECL 130
           N+   +  Q + E L
Sbjct: 113 NSAMQLANQAASEAL 127


>gi|294849241|ref|ZP_06789984.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
 gi|294823773|gb|EFG40199.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|296275510|ref|ZP_06858017.1| hypothetical protein SauraMR_04160 [Staphylococcus aureus subsp.
          aureus MR1]
          Length = 146

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG
Sbjct: 8  AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGG 61


>gi|291519431|emb|CBK74652.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
          fibrisolvens 16/4]
          Length = 144

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ R    + VL+      ND  N+I+   +A +  ++   + ++LQ L KA IV   
Sbjct: 1  MQISSRFTIAVHVLIAIETFKND--NKITSEFLASSANVNPTVIRRLLQQLKKAEIVTVK 58

Query: 58 RGRRGGVRLCRPADQITILDVVKATE 83
          RG  GG  + +   +IT+LDV  A E
Sbjct: 59 RGS-GGADIEKSLTEITLLDVYNAVE 83


>gi|255534651|ref|YP_003095022.1| rrf2 family protein (putative transcriptional regulator)
          [Flavobacteriaceae bacterium 3519-10]
 gi|255340847|gb|ACU06960.1| rrf2 family protein (putative transcriptional regulator)
          [Flavobacteriaceae bacterium 3519-10]
          Length = 144

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +K  +YGI+  +Y A  +   NR   +  +A +      F  KILQ L +  I+++VRG
Sbjct: 2  FSKACEYGIKAAIYIAQQSQL-NRTVNVKDVALSIDAPVAFTAKILQLLCREEILQSVRG 60

Query: 60 RRGGVRLCRPAD-QITILDVVKATEESFFVAEC 91
          ++GG         Q  I D+V   +      +C
Sbjct: 61 KQGGFFFSEEKQRQFRIYDLVTRIDGDGLFTQC 93


>gi|300775786|ref|ZP_07085647.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
 gi|300505813|gb|EFK36950.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
          Length = 136

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 35/56 (62%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
          +A +  ++ + + K +  L +AG++ + +G+ GG +L + AD ITI ++ KA + +
Sbjct: 29 MAGSINVNPVIVRKEISVLREAGLIISRQGKEGGSQLAKNADMITISEIYKAVKNT 84


>gi|149180394|ref|ZP_01858899.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           sp. SG-1]
 gi|148852586|gb|EDL66731.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           sp. SG-1]
          Length = 141

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++       +  L+Y A   D+      IA+    + + + KI+  L   G V+T  G 
Sbjct: 1   MYVNSEFTIAVHSLVYLAYLPDHMASSQAIAQNVATNPVRVRKIMSCLRDTGFVKTKEGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L      IT+  V ++              + +     SC +++ +++ +N  F 
Sbjct: 61  GGGYTLTAEPGDITLGQVYRSVSYGAIKPTWCKGEREE-----SCLISTNIQEVVNGIFT 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
              QY  E L  ++++I+ + N
Sbjct: 116 EADQYFAEYL--DKTTIESVLN 135


>gi|121606333|ref|YP_983662.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595302|gb|ABM38741.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 179

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ + +  ++  A+  N  P  ++ I     IS  +L ++   L ++G+VE+ RG
Sbjct: 1   MRLSTKSRFAVTAMIDIALQGNAGPISLADIGMRHKISVSYLEQLFSRLRQSGLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKAL 115
             GG  L R ++ I++ D++ A E         A  K +    G  G    +T  L  AL
Sbjct: 61  PGGGYSLSRSSESISVADIIGAIE-----VHPHAPGKGEKAFPGQAGSGEWMTQELWAAL 115

Query: 116 NA 117
           NA
Sbjct: 116 NA 117


>gi|42522704|ref|NP_968084.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
 gi|39573900|emb|CAE79077.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
          Length = 137

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 43 KILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
          +++  LV AG++ + +G+ GGV+L +   +I++ DV  A  +   +A
Sbjct: 42 RLISKLVDAGLLTSFKGKAGGVKLAKAPKEISLRDVYVAITDKKLIA 88


>gi|125718392|ref|YP_001035525.1| hypothetical protein SSA_1586 [Streptococcus sanguinis SK36]
 gi|125498309|gb|ABN44975.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 150

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGRKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPL 101
             GG  + +    I++LDV  A E      + F+ H     DCP+
Sbjct: 61  T-GGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPI 104


>gi|118478673|ref|YP_895824.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|118417898|gb|ABK86317.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
          Length = 137

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R  
Sbjct: 9   IHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            ++ +  + + T E     +C  S+         C + S +RK L   F
Sbjct: 69  SEVNLWHIYQITSEGALQPKCPESND-------QCIVGSNMRKVLFTIF 110


>gi|298290312|ref|YP_003692251.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Starkeya novella DSM 506]
 gi|296926823|gb|ADH87632.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
          506]
          Length = 147

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 3  LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+ ++   I  ++  A+H    P     +A    +    L  +LQ LV AG+++ VRG R
Sbjct: 4  LSDKSLLAIAAVVDVALHARGMPVAAKALAARHDLPPRHLEPVLQALVHAGVLKGVRGPR 63

Query: 62 GGVRLCRPADQIT 74
          GG  L R   +IT
Sbjct: 64 GGYELARERRRIT 76


>gi|268609517|ref|ZP_06143244.1| hypothetical protein RflaF_08475 [Ruminococcus flavefaciens FD-1]
          Length = 145

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
          ++ +  ++ + +  +L  L   GIVET +G  GG  L +  D+IT+ D+ KA +
Sbjct: 31 LSGSTGVNAVIVRNVLGQLRNTGIVETRQGS-GGAHLAKALDEITLYDIYKAVD 83


>gi|15891278|ref|NP_356950.1| hypothetical protein Atu3666 [Agrobacterium tumefaciens str. C58]
 gi|15159653|gb|AAK89735.1| conserved hypothetical protein [Agrobacterium tumefaciens str.
          C58]
          Length = 152

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 46/83 (55%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+LT+ ++  I +L       +  +   ++A    +++    +++  LV+ G++++ RGR
Sbjct: 1  MYLTRESEIAIGILTNFVHEAEEAHTTGKLAHRLGVTKDHAARVVAILVRNGLLQSRRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATE 83
           GGV L    + +++  +++AT+
Sbjct: 61 TGGVVLNVDPESLSVGMILRATQ 83


>gi|194367667|ref|YP_002030277.1| BadM/Rrf2 family transcriptional regulator [Stenotrophomonas
          maltophilia R551-3]
 gi|194350471|gb|ACF53594.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas
          maltophilia R551-3]
          Length = 151

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          P    Q+A       + + ++L  L +AG+V + RG  GG  L R A  IT+ D+
Sbjct: 23 PRTSEQLASCLPTHPVVIRRLLAQLHRAGLVRSTRGHGGGSVLARDAAAITLHDI 77


>gi|330684769|gb|EGG96463.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis
           VCU121]
          Length = 142

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I ++       IA +   + + + +I+  L +A +V+  RG 
Sbjct: 1   MKISSRFTVAVHILSLIQIESNQELSSKYIAGSVNTNPVVIRRIIGYLKRAQLVDMYRGN 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS---CGLTSVLRKAL 115
            GG+ L +P   IT+LDV  A +  E   + +      ++C +VG+     L  +L +A 
Sbjct: 61  -GGLYLLKPLSDITLLDVYHAVDVVEEGQLFQIHEDTNVNC-VVGANIQGVLEIILMQAQ 118

Query: 116 NAFFDVLTQYSIECLVR 132
           +A   VL + ++  +V 
Sbjct: 119 DAMEGVLAKVTMNDIVN 135


>gi|322382580|ref|ZP_08056458.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153435|gb|EFX45842.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 148

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDVVKATEE-S 85
            +IA   C     + KI+  L KAG V+T  G  GG  L C P D +T+ D+ + T   S
Sbjct: 31  GEIAANVCTHAARIRKIMGMLRKAGYVKTKEGFGGGFLLNCDP-DAVTLADIYRVTSAGS 89

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
                C       CP      ++S ++  +N  F
Sbjct: 90  LKPYWCTGDKSQSCP------VSSNMQDVMNRLF 117


>gi|307730053|ref|YP_003907277.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          CCGE1003]
 gi|307584588|gb|ADN57986.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
          CCGE1003]
          Length = 151

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QI++LDV +A ++    A+ FA H+
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDD----AQLFALHR 92


>gi|309799014|ref|ZP_07693270.1| Rrf2 family protein [Streptococcus infantis SK1302]
 gi|308117364|gb|EFO54784.1| Rrf2 family protein [Streptococcus infantis SK1302]
          Length = 145

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S  +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQISSRFTIATHMLIIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGS---CGLTSVLRKA 114
             GG  + +  + I++LDV +A E      + F+ H    P   VGS     L   L+K 
Sbjct: 61  T-GGAEIIKDLEDISLLDVYQAVECLGKTGQLFSFHDNPNPACPVGSNIHGVLDEKLQKI 119

Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
             A    L+Q S+  +V +  S
Sbjct: 120 QLAMEQELSQTSLAQVVADAES 141


>gi|253700358|ref|YP_003021547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251775208|gb|ACT17789.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 153

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    + + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +IT    V+  E       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYYLGRHPSKITFGQAVRVMEGPLAPVPCVSETAYAKCTECENEVTCGIRLVMKDVRDA 121

Query: 118 FFDVL 122
              +L
Sbjct: 122 MAVIL 126


>gi|260662062|ref|ZP_05862958.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260553445|gb|EEX26337.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 149

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + R    I +L +  ++ +       ++ +  IS + + +++  L +AG+V+T +G 
Sbjct: 1  MRASTRFSDAIHILCFLQVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59

Query: 61 RGGVRLCRPADQITILDVVKATEES 85
              RL R   +IT+ DV  A EES
Sbjct: 60 TAQPRLARDLQKITLYDVYLAVEES 84


>gi|187923598|ref|YP_001895240.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Burkholderia phytofirmans PsJN]
 gi|187714792|gb|ACD16016.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
          phytofirmans PsJN]
          Length = 151

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1  MNTSSRFAFAVHVLALLSLQEGAPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK 96
           GG  L R  +QIT+L+V +A ++    A+ FA H+
Sbjct: 61 GGGALLARAPEQITLLEVYRAVDD----AQLFALHR 92


>gi|312129124|ref|YP_003996464.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
          byssophila DSM 17132]
 gi|311905670|gb|ADQ16111.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
          byssophila DSM 17132]
          Length = 144

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +K  +YGIR  +Y A  +    ++S   +A+A      +  KILQ L K  I+++ +G 
Sbjct: 2  FSKACEYGIRAAIYIAQQSLVDRKVSLKDVAKAIESPTAYTSKILQKLSKNSIIKSDKGP 61

Query: 61 RGGVRL 66
           GG  +
Sbjct: 62 TGGFSM 67


Searching..................................................done


Results from round 2




>gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040297|gb|ACT57093.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score =  220 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR
Sbjct: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD
Sbjct: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VLTQYSIECLVRNRSSIKKIFNAG
Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144


>gi|315121821|ref|YP_004062310.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495223|gb|ADR51822.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 144

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 114/143 (79%), Positives = 128/143 (89%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLTKRTDYGIRVLMYCA++ D PNRI+QIAEACCISE FLFKILQPL KAGI+ETVRGR
Sbjct: 1   MHLTKRTDYGIRVLMYCALNQDCPNRIAQIAEACCISEFFLFKILQPLGKAGIIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRLCRPADQIT+LDVVKATEESF++AECF  HKI CPLVG+C L+SV +KALNAFFD
Sbjct: 61  NGGVRLCRPADQITVLDVVKATEESFYMAECFGKHKISCPLVGNCNLSSVFQKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL +YSIECLV++RS  KK+  A
Sbjct: 121 VLKRYSIECLVQDRSLYKKLLKA 143


>gi|222084938|ref|YP_002543467.1| rhizobial iron transcriptional regulator protein [Agrobacterium
           radiobacter K84]
 gi|221722386|gb|ACM25542.1| rhizobial iron transcriptional regulator protein [Agrobacterium
           radiobacter K84]
          Length = 162

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 109/142 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +  Y +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGYLSRIPEIAKAYGVSELFLFKILQPLTKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +P   I++ DVV+ TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPPTDISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VLT+YSI+ LV+ R  I  +  
Sbjct: 121 VLTEYSIDDLVKARPQINFLLG 142


>gi|227820925|ref|YP_002824895.1| iron-responsive transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227339924|gb|ACP24142.1| putative transcriptional regulator, Rrf2 family [Sinorhizobium
           fredii NGR234]
          Length = 154

 Score =  192 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 111/142 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA+A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAKAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA +I++ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFFD
Sbjct: 61  NGGVRLPKPASEISLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y+I+ LV+ R  I  +  
Sbjct: 121 VLKGYTIDDLVKARPQINFLLG 142


>gi|15887554|ref|NP_353235.1| iron-responsive transcriptional regulator [Agrobacterium
           tumefaciens str. C58]
 gi|15155087|gb|AAK86020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 156

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 109/142 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA++I++ DVV+ TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI+ LV+ R  I  +  
Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142


>gi|6224919|gb|AAF06014.1|AF193764_1 Aau3 protein [Sinorhizobium meliloti]
          Length = 154

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 110/142 (77%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAGAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y+I+ LV+ R  I  +  
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142


>gi|15964483|ref|NP_384836.1| iron-responsive transcriptional regulator [Sinorhizobium meliloti
           1021]
 gi|307308426|ref|ZP_07588130.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307318989|ref|ZP_07598420.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|8469098|sp|Q9R9M8|AAU3_RHIME RecName: Full=Protein aau3
 gi|15073660|emb|CAC45302.1| Transcriptional regulator of the iron limitation response
           [Sinorhizobium meliloti 1021]
 gi|306895403|gb|EFN26158.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306901029|gb|EFN31637.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 154

 Score =  191 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 110/142 (77%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGEKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y+I+ LV+ R  I  +  
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142


>gi|327190570|gb|EGE57662.1| iron-responsive transcriptional regulator [Rhizobium etli CNPAF512]
          Length = 160

 Score =  191 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL RPA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGRPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++Y+I+ LV+ R  I  +  
Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143


>gi|325291641|ref|YP_004277505.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059494|gb|ADY63185.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 156

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 109/142 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA++I++ DVVK TE+SF +AECF    ++CPLV SCGL S LRKALNAFFD
Sbjct: 61  NGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI+ LV+ R  I  +  
Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142


>gi|218663399|ref|ZP_03519329.1| iron-responsive transcriptional regulator [Rhizobium etli IE4771]
          Length = 160

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++   +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL+ Y+I+ LV+ R  I  +  
Sbjct: 121 AVLSDYTIDDLVKARPQINFLLG 143


>gi|86356384|ref|YP_468276.1| iron-responsive transcriptional regulator [Rhizobium etli CFN 42]
 gi|190890437|ref|YP_001976979.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CIAT 652]
 gi|86280486|gb|ABC89549.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|190695716|gb|ACE89801.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
           CIAT 652]
          Length = 160

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++Y+I+ LV+ R  I  +  
Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143


>gi|299065123|emb|CBJ36287.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           CMR15]
          Length = 192

 Score =  190 bits (485), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/144 (43%), Positives = 87/144 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 21  MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 80

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF  +   C +   CGL  VL  AL A+F+
Sbjct: 81  AGGITLGRPAAEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 140

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 141 VLDTYTLQDLIERPAALNRVLAEG 164


>gi|241203174|ref|YP_002974270.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857064|gb|ACS54731.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 160

 Score =  190 bits (484), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    ++DCPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVDCPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++YSI+ LV+ R  I  +  
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143


>gi|150395554|ref|YP_001326021.1| iron-responsive transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027069|gb|ABR59186.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 154

 Score =  190 bits (483), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/142 (61%), Positives = 109/142 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61  NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y+I+ LV+ R  I  +  
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142


>gi|13516334|emb|CAC35510.1| rhizobial iron regulator [Rhizobium leguminosarum bv. viciae]
          Length = 160

 Score =  190 bits (483), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 111/143 (77%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    +++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++YSI+ LV+ R  I  +  
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143


>gi|300689754|ref|YP_003750749.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           PSI07]
 gi|299076814|emb|CBJ49424.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           PSI07]
          Length = 172

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 62/144 (43%), Positives = 86/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGIALGRPAAEINIGDVVRATEPDFSLVECFHGDDNHCVITRVCGLRGVLTAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDAYTLQDLIDRPAALNRVLAEG 144


>gi|209547997|ref|YP_002279914.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209533753|gb|ACI53688.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 160

 Score =  189 bits (482), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 109/143 (76%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++YSI+ LV+ R  I  +  
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143


>gi|83590489|ref|YP_430498.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573403|gb|ABC19955.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica
           ATCC 39073]
          Length = 150

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R +YG+R +   A H  + P  I  +AE   ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTRGEYGLRAMFDLAQHYGEGPIPIKSVAERQDISEHYLEQLIAVLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R  ++IT+ D+++  E      EC   +    C    +C    +  K  ++ 
Sbjct: 61  AQGGYVLSREPEEITVGDIIRVLEGPIAPVECLNTAEGESCERAETCVTRGIWEKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            DVL  +++  +V   + +++
Sbjct: 121 SDVLDSFTLADMVAKANQMRQ 141


>gi|239833919|ref|ZP_04682247.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239821982|gb|EEQ93551.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 211

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 106/142 (74%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 59  MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 118

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I++ DVV+ TEE+F +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 119 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 178

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 179 VLMKYSIADLVKARPNVRHLLG 200


>gi|116250549|ref|YP_766387.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255197|emb|CAK06271.1| Rhizobium iron regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 160

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA ++ + +RI +IA A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL +PA  I++ DVV+ TE+SF +AECF    +++CPLV SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL++YSI+ LV+ R  I  +  
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143


>gi|300702436|ref|YP_003744036.1| hth-type transcriptional regulator nsrr [Ralstonia solanacearum
           CFBP2957]
 gi|299070097|emb|CBJ41384.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
           CFBP2957]
          Length = 170

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/144 (43%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAADINIGDVVRATEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144


>gi|17548114|ref|NP_521516.1| hypothetical protein RSc3397 [Ralstonia solanacearum GMI1000]
 gi|17430421|emb|CAD16894.1| putative of unknown function upf0074; transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 172

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/144 (43%), Positives = 87/144 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DVV+ATE  F + ECF  +   C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIERPAALNRVLAEG 144


>gi|89096423|ref|ZP_01169316.1| YhdE [Bacillus sp. NRRL B-14911]
 gi|89089277|gb|EAR68385.1| YhdE [Bacillus sp. NRRL B-14911]
          Length = 158

 Score =  188 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY IRVL+Y A H ND    I +IAEA  IS+  L KI+  L K G + TVRG
Sbjct: 1   MRLTTYSDYSIRVLIYLASHQNDKLVNIKEIAEAYDISKNHLMKIIYNLGKMGYIRTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG +L +   +I I ++V+ TEE F++ ECF  HK  C +   C L  +L  AL +F 
Sbjct: 61  RNGGFKLAKLPAEINIGEIVRKTEEDFYLVECF-DHKNKCVITPVCSLKHILNHALESFL 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++E +V N++ +K+ F
Sbjct: 120 KVLDQYTLEDIVENKAMLKEYF 141


>gi|222147641|ref|YP_002548598.1| iron-responsive transcriptional regulator [Agrobacterium vitis S4]
 gi|221734629|gb|ACM35592.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 156

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + D+ +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRILMYCAANKDHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  ++I++ DVVK TE+SF +AECF    ++DCPL+ SCGL S LRKALNAFF
Sbjct: 61  NGGVRLGRAPEKISLFDVVKVTEDSFAMAECFEDDGEVDCPLIDSCGLNSALRKALNAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL +YSI+ LV+ R  I  +  
Sbjct: 121 AVLAEYSIDDLVKARPQINFLLG 143


>gi|241664864|ref|YP_002983224.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12D]
 gi|309780331|ref|ZP_07675082.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
 gi|240866891|gb|ACS64552.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12D]
 gi|308921034|gb|EFP66680.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
          Length = 159

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/143 (41%), Positives = 84/143 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I +IA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I + DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL  Y+++ LV   +++ +    
Sbjct: 121 VLDGYTLQDLVDKPNAVSRALGE 143


>gi|207722055|ref|YP_002252493.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|207741831|ref|YP_002258223.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
 gi|206587229|emb|CAQ17813.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|206593215|emb|CAQ60142.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
          Length = 172

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/144 (42%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV++TE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144


>gi|52079417|ref|YP_078208.1| hypothetical protein BL02858 [Bacillus licheniformis ATCC 14580]
 gi|52784777|ref|YP_090606.1| YhdE [Bacillus licheniformis ATCC 14580]
 gi|319646802|ref|ZP_08001031.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
 gi|81386129|sp|Q65M01|NSRR_BACLD RecName: Full=HTH-type transcriptional regulator nsrR
 gi|52002628|gb|AAU22570.1| conserved hypothetical protein YhdE [Bacillus licheniformis ATCC
           14580]
 gi|52347279|gb|AAU39913.1| YhdE [Bacillus licheniformis ATCC 14580]
 gi|317391390|gb|EFV72188.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
          Length = 143

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 90/143 (62%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  +++    I  IA++  IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +V++ TE+ F + ECF   K  C L   CGL  VL KAL+A+ 
Sbjct: 61  RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DVL QY+++ ++ N+  I+K+ +
Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLLS 143


>gi|83746141|ref|ZP_00943195.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
 gi|83727107|gb|EAP74231.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
          Length = 189

 Score =  186 bits (474), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/144 (42%), Positives = 85/144 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I QIA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 18  MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA  I I DVV++TE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 78  AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 137

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VL  Y+++ L+   +++ ++   G
Sbjct: 138 VLDTYTLQDLIDKPAALNRVLAEG 161


>gi|295702551|ref|YP_003595626.1| nitric oxide sensitive transcriptional regulator [Bacillus
           megaterium DSM 319]
 gi|294800210|gb|ADF37276.1| transcriptional regulator, nitric oxide sensitive [Bacillus
           megaterium DSM 319]
          Length = 149

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +RVL+Y  + ++     I +IAEA  IS+  L KI+  L K G++ET+RG
Sbjct: 1   MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +    I I  VV+ TEE F + ECF      C +   C L +VL +A+ AF 
Sbjct: 61  RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDREGNFCVISPVCKLKNVLHEAMQAFI 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++E L++N+  +  + 
Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142


>gi|92118952|ref|YP_578681.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801846|gb|ABE64221.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           hamburgensis X14]
          Length = 150

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  ISE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDISEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P + I++ +V++ TE    +  CF      C +  SC L   L +A  AF +
Sbjct: 61  GGGLRLAKPVEAISLAEVIRTTEPDMAIVTCFKPVNAPCMINPSCVLKRALERAREAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  LV  R+ +  +  
Sbjct: 121 VLEGYTLADLVAPRARLASLLG 142


>gi|187930672|ref|YP_001901159.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12J]
 gi|187727562|gb|ACD28727.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12J]
          Length = 159

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 83/143 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H D    I +IA+A  I +  L KI+Q L + G + TVRGR
Sbjct: 1   MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I + DVV+ATE  F + ECF      C +   CGL  VL  AL A+F+
Sbjct: 61  AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL  Y+++ L    +++ +    
Sbjct: 121 VLDGYTLQDLADKPNAVSRALGE 143


>gi|294497180|ref|YP_003560880.1| nitric oxide sensitive transcriptional regulator [Bacillus
           megaterium QM B1551]
 gi|294347117|gb|ADE67446.1| transcriptional regulator, nitric oxide sensitive [Bacillus
           megaterium QM B1551]
          Length = 149

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +RVL+Y  + ++     I +IAEA  IS+  L KI+  L K G++ET+RG
Sbjct: 1   MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +    I I  VV+ TEE F + ECF      C +   C L SVL +A+ AF 
Sbjct: 61  RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFI 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++E L++N+  +  + 
Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142


>gi|153010938|ref|YP_001372152.1| iron-responsive transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151562826|gb|ABS16323.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 153

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 106/142 (74%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I++ DVV+ TEE+F +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRHLLG 142


>gi|110633798|ref|YP_674006.1| iron-responsive transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284782|gb|ABG62841.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 153

 Score =  184 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA +    +RI  IA+A  +S+LFLFKILQPLV+AG V+TVRGR
Sbjct: 1   MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA+ IT+ DV++ TEESF +AECF +   +CPLV  CGL   LRKAL AFF+
Sbjct: 61  NGGVKLGKPAEDITLFDVIRVTEESFAMAECFEND-TECPLVDGCGLNEALRKALGAFFE 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y+I+ LV  R +++ +  
Sbjct: 120 VLASYTIQDLVDARPNMRDVLG 141


>gi|225629057|ref|ZP_03787090.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
 gi|225615553|gb|EEH12602.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
          Length = 180

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28  MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 88  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169


>gi|237817129|ref|ZP_04596121.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|237787942|gb|EEP62158.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
          Length = 180

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28  MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 88  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169


>gi|260459730|ref|ZP_05807984.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034532|gb|EEW35789.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 153

 Score =  183 bits (467), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA +ND  +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANNDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y+I  +V  R +++ +  
Sbjct: 121 VLERYTIADMVAARPNVRSLLG 142


>gi|295401854|ref|ZP_06811818.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111004|ref|YP_003989320.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294976108|gb|EFG51722.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216105|gb|ADP74709.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 156

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++  A+       I +I++   ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGALEPGEKTNIKEISQTFSISENHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I  VV+ TEE+  + ECFASH   C L   C L SVL +AL AF 
Sbjct: 61  RNGGIRLAKQPEEINIGAVVRKTEENLSLVECFASHGNHCVLTPVCQLKSVLHEALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL  Y++  L+ N+ S++ IF+
Sbjct: 121 RVLDAYALSDLLANKQSLQAIFS 143


>gi|300115490|ref|YP_003762065.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299541427|gb|ADJ29744.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 153

 Score =  183 bits (466), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y  ++N     IS+IA++  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + I I  VV+ TE  F +AECF +    C +   C L +V  +A  AF  
Sbjct: 61  GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCQLKNVFWEARCAFIA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  +V+N+S ++    
Sbjct: 121 VLDRYTLADIVKNKSQLRSSLQ 142


>gi|13471232|ref|NP_102801.1| iron-responsive transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|14021976|dbj|BAB48587.1| Aau3 protein [Mesorhizobium loti MAFF303099]
          Length = 153

 Score =  183 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA +ND  +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y+I  +V  R +++ +  
Sbjct: 121 VLARYTIADMVAARPNVRNLLG 142


>gi|163758625|ref|ZP_02165712.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
 gi|162283915|gb|EDQ34199.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
          Length = 149

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 84/142 (59%), Positives = 108/142 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++   +RI  IA+A  +SELFLFKILQPL KAG+VE+VRGR
Sbjct: 1   MRLTRQTNYAVRMLMYCAANDGNLSRIGDIAKAYSVSELFLFKILQPLTKAGLVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R AD+IT+LDVV  TE+SF +AECF +   +CPLV SCGL + LRKAL AFF+
Sbjct: 61  NGGIRLGRAADKITLLDVVSVTEDSFAMAECFENDATECPLVDSCGLNTALRKALGAFFE 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  YSI+ LV+ R SI  +  
Sbjct: 121 VLATYSIDDLVKARPSINFLLG 142


>gi|77166414|ref|YP_344939.1| hypothetical protein Noc_2967 [Nitrosococcus oceani ATCC 19707]
 gi|254435367|ref|ZP_05048874.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
 gi|76884728|gb|ABA59409.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207088478|gb|EDZ65750.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
          Length = 153

 Score =  183 bits (465), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y  ++N     IS+IA++  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + I I  VV+ TE  F +AECF +    C +   C L +V  +A  AF  
Sbjct: 61  GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCELKNVFWEARCAFIA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  +V+N+S ++    
Sbjct: 121 VLDRYTLADIVKNKSQLRSSLQ 142


>gi|121535959|ref|ZP_01667753.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
 gi|121305451|gb|EAX46399.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
          Length = 148

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   A+H    P  +  +A+   ISE +L +++  L KAG V++VRG
Sbjct: 1   MKLSTKGRYGVAAMYDLALHYGQGPISLKNVAKRQGISEHYLEQLMGILRKAGYVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D+++  E      +C  +    C     C    V  K  ++  
Sbjct: 61  SQGGYTLTKDPAEITVGDIIRIMEGPIAPVDCLLTDNNSCKRADICVTRGVWAKVRDSIS 120

Query: 120 DVLTQYSIECLVRNRSS 136
            VL   S+  L R    
Sbjct: 121 QVLDSISLADLCREEKD 137


>gi|319783139|ref|YP_004142615.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169027|gb|ADV12565.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 154

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/142 (55%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R+LMYCA ++D  +RI +IA A  +SELFLFKILQPLV+ G+V+TVRGR
Sbjct: 1   MRLTRQTNYAMRILMYCAANDDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L R A+ I++ DVV+ TEESF +AECF +   +CPLV SC L S LR+ALNAFF 
Sbjct: 61  NGGVKLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y+I  LV  R +++ +  
Sbjct: 121 VLARYTIADLVAARPNVRNLLG 142


>gi|256015338|ref|YP_003105347.1| RrF2 family protein [Brucella microti CCM 4915]
 gi|255997998|gb|ACU49685.1| RrF2 family protein [Brucella microti CCM 4915]
          Length = 153

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/142 (55%), Positives = 106/142 (74%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F + ECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMTECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|307947490|ref|ZP_07662823.1| protein Aau3 [Roseibium sp. TrichSKD4]
 gi|307769308|gb|EFO28536.1| protein Aau3 [Roseibium sp. TrichSKD4]
          Length = 153

 Score =  182 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/141 (46%), Positives = 100/141 (70%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R LMYCA++ D P+R++ IA +  +SE  LFKI++ LV A +++T+RGR
Sbjct: 1   MRLTQQTNYAVRALMYCAVNPDKPSRVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L +PA+ I++ +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +
Sbjct: 61  NGGVMLAKPAETISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   SI  L  +R  ++++ 
Sbjct: 121 VLDTKSIADLSEDRFGMRELL 141


>gi|23500306|ref|NP_699746.1| iron-responsive transcriptional regulator [Brucella suis 1330]
 gi|161620624|ref|YP_001594510.1| iron-responsive transcriptional regulator [Brucella canis ATCC
           23365]
 gi|254702937|ref|ZP_05164765.1| iron-responsive transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260568151|ref|ZP_05838620.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261753543|ref|ZP_05997252.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|23463917|gb|AAN33751.1| RrF2 family protein [Brucella suis 1330]
 gi|161337435|gb|ABX63739.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|260154816|gb|EEW89897.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261743296|gb|EEY31222.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 153

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLVK G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVKHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|118589790|ref|ZP_01547195.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
 gi|118437876|gb|EAV44512.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
          Length = 154

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/141 (46%), Positives = 100/141 (70%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y +R LMYCA++ D P++++ IA +  +SE  LFKI++ LV A +++T+RGR
Sbjct: 1   MRLTQQTNYAVRALMYCAVNPDKPSKVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPA++I++ +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +
Sbjct: 61  NGGVMLARPAEKISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   SI  L  +R  ++ + 
Sbjct: 121 VLDGKSIADLSEDRFGMRDLL 141


>gi|17989052|ref|NP_541685.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           1 str. 16M]
 gi|148557978|ref|YP_001257553.1| iron-responsive transcriptional regulator [Brucella ovis ATCC
           25840]
 gi|225686349|ref|YP_002734321.1| iron-responsive transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|254699801|ref|ZP_05161629.1| iron-responsive transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|254705944|ref|ZP_05167772.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711169|ref|ZP_05172980.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254720448|ref|ZP_05182259.1| iron-responsive transcriptional regulator [Brucella sp. 83/13]
 gi|256029550|ref|ZP_05443164.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256043455|ref|ZP_05446384.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           1 str. Rev.1]
 gi|256059242|ref|ZP_05449448.1| iron-responsive transcriptional regulator [Brucella neotomae 5K33]
 gi|256111523|ref|ZP_05452537.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
           3 str. Ether]
 gi|256157745|ref|ZP_05455663.1| iron-responsive transcriptional regulator [Brucella ceti M490/95/1]
 gi|256253285|ref|ZP_05458821.1| iron-responsive transcriptional regulator [Brucella ceti B1/94]
 gi|256262513|ref|ZP_05465045.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260167360|ref|ZP_05754171.1| iron-responsive transcriptional regulator [Brucella sp. F5/99]
 gi|260564653|ref|ZP_05835138.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|261220398|ref|ZP_05934679.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261313373|ref|ZP_05952570.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318761|ref|ZP_05957958.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261323195|ref|ZP_05962392.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261750271|ref|ZP_05993980.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261756768|ref|ZP_06000477.1| RrF2 family protein [Brucella sp. F5/99]
 gi|265985470|ref|ZP_06098205.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265986559|ref|ZP_06099116.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265989875|ref|ZP_06102432.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993019|ref|ZP_06105576.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|265996251|ref|ZP_06108808.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|294853640|ref|ZP_06794312.1| rirA [Brucella sp. NVSL 07-0026]
 gi|306839690|ref|ZP_07472493.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|306841790|ref|ZP_07474476.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306845894|ref|ZP_07478462.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|17984895|gb|AAL53949.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|148369263|gb|ABQ62135.1| RrF2 family protein [Brucella ovis ATCC 25840]
 gi|225642454|gb|ACO02367.1| Transcriptional regulator, Rrf2 family protein [Brucella melitensis
           ATCC 23457]
 gi|260152296|gb|EEW87389.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260918982|gb|EEX85635.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297984|gb|EEY01481.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299175|gb|EEY02672.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302399|gb|EEY05896.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261736752|gb|EEY24748.1| RrF2 family protein [Brucella sp. F5/99]
 gi|261740024|gb|EEY27950.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262550548|gb|EEZ06709.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|262763889|gb|EEZ09921.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|263000544|gb|EEZ13234.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092248|gb|EEZ16545.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264658756|gb|EEZ29017.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264664062|gb|EEZ34323.1| transcriptional regulator [Brucella sp. 83/13]
 gi|294819295|gb|EFG36295.1| rirA [Brucella sp. NVSL 07-0026]
 gi|306273786|gb|EFM55624.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|306288195|gb|EFM59582.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306405270|gb|EFM61546.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|326410717|gb|ADZ67781.1| iron-responsive transcriptional regulator [Brucella melitensis M28]
 gi|326554010|gb|ADZ88649.1| iron-responsive transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 153

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|85714888|ref|ZP_01045874.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
 gi|85698374|gb|EAQ36245.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
          Length = 150

 Score =  181 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  +SE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDVSEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA+ I + +V++ TE    +  C       C +  SC L   L +A  AF +
Sbjct: 61  GGGLRLAKPAEAIRLAEVIRTTEPDMAIVSCLKPLNAPCMINPSCVLKRALERAQQAFME 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  L   R+ +  +  
Sbjct: 121 VLEGYTLADLTAPRARLSSLLG 142


>gi|292490559|ref|YP_003525998.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291579154|gb|ADE13611.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
           Nc4]
          Length = 153

 Score =  181 bits (460), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 83/141 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y ++H++    IS+IA +  IS   L K++  L   G ++T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLSLHDEQLATISEIASSYNISRNHLGKVVHNLANLGYIDTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  ++I +  +V+ TE  F VAECF +    C +   C L  V  +A  AF  
Sbjct: 61  GGGMRLSQAPEKINLGRIVQQTEGRFDVAECFNTTHNTCSISSCCQLKDVFWEARCAFLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  +++N++ ++   
Sbjct: 121 VLNRYTLADVIKNKNELRSSL 141


>gi|62317580|ref|YP_223433.1| iron-responsive transcriptional regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|83269562|ref|YP_418853.1| iron-responsive transcriptional regulator [Brucella melitensis
           biovar Abortus 2308]
 gi|189022834|ref|YP_001932575.1| iron-responsive transcriptional regulator [Brucella abortus S19]
 gi|254691079|ref|ZP_05154333.1| iron-responsive transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254695615|ref|ZP_05157443.1| iron-responsive transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|254698864|ref|ZP_05160692.1| iron-responsive transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254732311|ref|ZP_05190889.1| iron-responsive transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256256264|ref|ZP_05461800.1| iron-responsive transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260544818|ref|ZP_05820639.1| RrF2 family protein [Brucella abortus NCTC 8038]
 gi|260756675|ref|ZP_05869023.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260760106|ref|ZP_05872454.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260763344|ref|ZP_05875676.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882492|ref|ZP_05894106.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261216014|ref|ZP_05930295.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297249620|ref|ZP_06933321.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
           bv. 5 str. B3196]
 gi|62197773|gb|AAX76072.1| RrF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939836|emb|CAJ12844.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
           Abortus 2308]
 gi|189021408|gb|ACD74129.1| RrF2 family protein [Brucella abortus S19]
 gi|260098089|gb|EEW81963.1| RrF2 family protein [Brucella abortus NCTC 8038]
 gi|260670424|gb|EEX57364.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673765|gb|EEX60586.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676783|gb|EEX63604.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872020|gb|EEX79089.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917621|gb|EEX84482.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|297173489|gb|EFH32853.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
           bv. 5 str. B3196]
          Length = 153

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|298247883|ref|ZP_06971688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550542|gb|EFH84408.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 152

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 60/143 (41%), Positives = 83/143 (58%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLT  TDY +RVL+Y A + D     I  IA+   IS   L KI+  L K G +ET+RG
Sbjct: 1   MHLTYHTDYALRVLLYLAAYPDTQLANIQDIADTYTISSNHLMKIVHKLGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL R    I I +VV+ TEE FF+ ECF S    C +   C L + L++AL AF 
Sbjct: 61  RNGGMRLARKPADIRIGEVVRQTEEDFFLVECFDSEHNCCVITPVCNLRTALQEALTAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL +Y++  L  N++  +++  
Sbjct: 121 SVLDKYTLADLTSNKALYQRLIT 143


>gi|49475376|ref|YP_033417.1| iron-responsive transcriptional regulator [Bartonella henselae str.
           Houston-1]
 gi|49238182|emb|CAF27391.1| hypothetical protein BH05830 [Bartonella henselae str. Houston-1]
          Length = 155

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/140 (55%), Positives = 107/140 (76%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA+A  +SELFLFKILQPLV+AG V+TVRGR
Sbjct: 1   MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DVVK TE++F +AECF + K +CPL+  C L + L+KALNAFFD
Sbjct: 61  NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD 120

Query: 121 VLTQYSIECLVRN--RSSIK 138
           VL+  S+  L R   R+ +K
Sbjct: 121 VLSVISLADLQRPSFRNQLK 140


>gi|254443774|ref|ZP_05057250.1| rrf2 family protein (putative transcriptional regulator)
           [Verrucomicrobiae bacterium DG1235]
 gi|198258082|gb|EDY82390.1| rrf2 family protein (putative transcriptional regulator)
           [Verrucomicrobiae bacterium DG1235]
          Length = 144

 Score =  180 bits (459), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TDY +R+L+Y  ++ +    +++IA+A  IS+  L KI   L + GIV   RG+
Sbjct: 1   MELTKFTDYSLRMLLYLGLNEERLVSLTEIADAYSISKNHLVKISAHLSQNGIVAATRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +   +I I  VV++TE    + ECF      C +  +C L SVL+KA  AF+ 
Sbjct: 61  GGGIRLAKQPHEINIGTVVRSTEGHTPLVECFDPENNRCCITKNCTLKSVLKKAEKAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L Q++++ L++NR  +   F
Sbjct: 121 ELDQHTLQDLLKNRKGLAATF 141


>gi|163844714|ref|YP_001622369.1| iron-responsive transcriptional regulator [Brucella suis ATCC
           23445]
 gi|163675437|gb|ABY39547.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
           23445]
          Length = 153

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|239827060|ref|YP_002949684.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. WCH70]
 gi|239807353|gb|ACS24418.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
          Length = 147

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++   +  +    I +I++   ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGTLDPEEKTNIKEISKTFSISENHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL R  ++I I  VV+ TEE+  + ECFA H   C L   C L  VL +AL +F 
Sbjct: 61  RNGGIRLARKPEEIRIGSVVRNTEENLSLVECFAGHGNHCVLTPVCQLKRVLHEALGSFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ N+  ++ IF
Sbjct: 121 QVLDSYTLADLLSNKQHLQMIF 142


>gi|312135466|ref|YP_004002804.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           owensensis OL]
 gi|311775517|gb|ADQ05004.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           owensensis OL]
          Length = 150

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   +EC     K+DCP    C    V  K   A  
Sbjct: 63  QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
           +V+   +++ LV +   +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140


>gi|75674940|ref|YP_317361.1| hypothetical protein Nwi_0743 [Nitrobacter winogradskyi Nb-255]
 gi|74419810|gb|ABA04009.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 150

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 77/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A+ +D  + I++IA +  +SE  L K++  L  AG +ETVRGR
Sbjct: 1   MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGVAGYIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP + I + +V++ TE    V  C       C +   C L   + +A  AF D
Sbjct: 61  GGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCKINPCCVLKRAMERAQQAFMD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  LV     +  +  
Sbjct: 121 VLEGYTLADLVVPSGRLSNLLG 142


>gi|146297253|ref|YP_001181024.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410829|gb|ABP67833.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 150

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIATLKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   AEC     K+DCP    C    V  K   A  
Sbjct: 63  QGGYMLSREPSKITIGEILRALEGSLSPAECIDDIEKVDCPRADFCVTKKVWEKVKKAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+   +++ LV +   +
Sbjct: 123 SVVDSITLQDLVDDYKKM 140


>gi|91790549|ref|YP_551501.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699774|gb|ABE46603.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 156

 Score =  178 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 79/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I++IA A  +SE  L K++  L K G +  VRG+
Sbjct: 1   MKLTAFTDYSLRVLIYLAAQPQQRATIAEIATAFDVSENHLSKVVHCLGKNGWLANVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L  P + I +  VV+ TE    VAECF+     C +   C L  VL +A+ AF  
Sbjct: 61  GGGLELAMPPELIGVGAVVRQTEGVAVVAECFSDKGNHCSITRVCRLRGVLGEAVEAFHA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  LV+NR S+ ++ 
Sbjct: 121 VLDRYTLADLVQNRQSLARVL 141


>gi|311031562|ref|ZP_07709652.1| nitric oxide sensitive transcriptional regulator [Bacillus sp.
           m3-13]
          Length = 158

 Score =  178 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  TDY +RVL+Y A   +     +I +IAEA  IS+  L K+   L K G VET+R
Sbjct: 1   MKLTLYTDYSLRVLLYLASAPENNKLIQIKEIAEAYGISKNHLMKVTFHLGKLGYVETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L +   ++ I ++V+ TEE F + ECF  H   C +   C L  VL +A  AF
Sbjct: 61  GRNGGLLLAKEPKELNIGELVRQTEEDFHIVECFQDH-ASCVISPHCKLKGVLYQATQAF 119

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QY++  L+ N+  +  + 
Sbjct: 120 ISVLDQYTLADLITNKEQLTTLL 142


>gi|225388530|ref|ZP_03758254.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
           DSM 15981]
 gi|225045409|gb|EEG55655.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
           DSM 15981]
          Length = 144

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++  A+H D  P +I  IA+   IS  +L +I+  L +AG V ++RG
Sbjct: 1   MLISTKGRYALRTMVDLALHADGEPVKIKDIAKRQEISGKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA   T+  +++ TE S    +C       C     C    + ++   A  
Sbjct: 61  NQGGYYLARPAKDYTVGMILRVTEGSLAPVDCLTGDDNPCARQQECVTLKLWKELDGAIR 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           DV+  Y+++ LV+ + +++  +
Sbjct: 121 DVVDGYTLDDLVQWQRAMQDNY 142


>gi|239626143|ref|ZP_04669174.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520373|gb|EEQ60239.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 144

 Score =  178 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++  AIH D  P +I  IA    IS  +L +I+  L +AG V ++RG
Sbjct: 1   MLVSTKGRYALRTMVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +PA + T+  +++ TE S    +C +  +  C     C    + R+   A  
Sbjct: 61  NQGGYYLAKPAAEYTVGMILRVTEGSLAPVDCLSGGENPCTRQMDCVTLRLWRELDEAIS 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+ +Y++E LV+ R ++K  +
Sbjct: 121 GVVDRYTLEDLVQWRRNMKDNY 142


>gi|49474135|ref|YP_032177.1| iron-responsive transcriptional regulator [Bartonella quintana str.
           Toulouse]
 gi|49239639|emb|CAF25998.1| aau3 protein [Bartonella quintana str. Toulouse]
          Length = 148

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI  IA+A  ISE FLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVEAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +PA +I++ DVVK TE++F +AECF + K +CPL+  CGL + L+KALNAFFD
Sbjct: 61  NGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCPLIDFCGLNTALQKALNAFFD 120

Query: 121 VLTQYSIECLVRN--RSSIK 138
           VL+  S+  L R   R+ +K
Sbjct: 121 VLSMISLADLQRRSFRNQLK 140


>gi|312127257|ref|YP_003992131.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777276|gb|ADQ06762.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 150

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A  
Sbjct: 63  QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
           +V+   +++ LV +   +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140


>gi|319408357|emb|CBI82010.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 137

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 99/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + D  + I +IA+   ISELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKKTNYALRILMYCASNQDSLSSIPEIAKTYAISELFLFKILQPLVEAGFLQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +PA +I++ DVVK  E++F +AECF   +++CPLV SC L  VL+ ALNAFFD
Sbjct: 61  NGGIKLAKPATEISVADVVKIIEDNFSMAECFDKTEVNCPLVNSCNLNIVLKNALNAFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSTTSISDL 130


>gi|312793908|ref|YP_004026831.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877395|ref|ZP_07737360.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795869|gb|EFR12233.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312181048|gb|ADQ41218.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 150

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKNIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A  
Sbjct: 63  QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
           +V+   +++ LV +   +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140


>gi|240850269|ref|YP_002971662.1| iron-responsive transcriptional regulator [Bartonella grahamii
           as4aup]
 gi|240267392|gb|ACS50980.1| iron-responsive transcriptional regulator [Bartonella grahamii
           as4aup]
          Length = 147

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/130 (54%), Positives = 99/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +R+ +IA+A  +SELFLFKILQ LV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGTLSRVPEIAKAYAVSELFLFKILQLLVQAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA +I++ DVVK TE++F +AECF + +  CPL+  C L + L+KALNAFF+
Sbjct: 61  NGGVRLAKPAAEISVADVVKVTEDNFSLAECFDTAEPTCPLIDFCSLNTALQKALNAFFE 120

Query: 121 VLTQYSIECL 130
           VL+  S+  L
Sbjct: 121 VLSVISLADL 130


>gi|254712372|ref|ZP_05174183.1| iron-responsive transcriptional regulator [Brucella ceti M644/93/1]
 gi|254715444|ref|ZP_05177255.1| iron-responsive transcriptional regulator [Brucella ceti M13/05/1]
 gi|261217178|ref|ZP_05931459.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320049|ref|ZP_05959246.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|260922267|gb|EEX88835.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292739|gb|EEX96235.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 153

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA ++   +RI +IA A  +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1   MRLTRQTNYTIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R +  I++ DVV+ TEE+F +AECF +   +CPLV SCGL + LR+ALNAFF 
Sbjct: 61  NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +YSI  LV+ R +++ +  
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142


>gi|296133417|ref|YP_003640664.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
 gi|296031995|gb|ADG82763.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR]
          Length = 149

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ +   A H  + P  +  IAE   +SE +L +++  L KAG+V++VRG
Sbjct: 1   MKVSTKGHYGVQAMFDLAQHFGEGPVSLKSIAERQGLSEPYLEQLIAVLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R    I + D+++  E      EC +    + C     C   SV  K   + 
Sbjct: 61  AQGGYILAREPRDIKVGDIIRVLEGPIAPVECVSQDDPEHCLKFDFCVTKSVWEKVKKSI 120

Query: 119 FDVLTQYSIECLVRNRSS 136
            +VL   ++  ++++   
Sbjct: 121 EEVLDSITLADMLKDAEE 138


>gi|222529700|ref|YP_002573582.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312622077|ref|YP_004023690.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222456547|gb|ACM60809.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           bescii DSM 6725]
 gi|312202544|gb|ADQ45871.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 150

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   +EC     ++DCP    C    V  K   A  
Sbjct: 63  QGGYMLSRDPSKITIGEILRALEGSLSPSECIDDLDRVDCPRAEFCVTRKVWEKVKEAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+   +++ LV +   +
Sbjct: 123 KVVDSVTLQDLVDDYKKM 140


>gi|138895291|ref|YP_001125744.1| hypothetical protein GTNG_1635 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250928|ref|ZP_03149612.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
 gi|134266804|gb|ABO66999.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209569|gb|EDY04344.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
          Length = 148

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++   +       I +I+    +SE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTSYTEYALRVLLFLGTLDEGEKTNIKEISTIFSLSEHHLSKIVHELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I +  VV+ TE++  + ECFASH  +C L  +C L  VLR+AL AF 
Sbjct: 61  RNGGIRLAKRPEEIIVGAVVRETEDNLSLVECFASHGNECILTPACRLRFVLREALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ NR+S++ + 
Sbjct: 121 RVLDTYTLADLLENRTSLRALL 142


>gi|197106638|ref|YP_002132015.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480058|gb|ACG79586.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
          Length = 148

 Score =  177 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+ +RVLMY A+H D    I++IA    IS+  L K++  L +AG +ETVRG+
Sbjct: 1   MRLTGYTDFALRVLMYIAVHPDRRPTIAEIAAGYGISKNHLMKVVFDLGRAGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+ I + ++V+ TE    +A C       C +  +C L  VL +A  AF D
Sbjct: 61  NGGLRLARPAESIGVGELVRRTEGDMALAPCLGRADG-CVITPACRLKGVLVEARTAFMD 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y+I  L R   S++ +  
Sbjct: 120 VLDRYTIADLARQPESLRALLG 141


>gi|255505326|ref|ZP_05345447.3| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
 gi|255268340|gb|EET61545.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
          Length = 153

 Score =  177 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+     P R+  IA+   IS  ++ +I+  L KAG ++++RG
Sbjct: 10  MKISTKGRYALRIMLDIAVMGGSEPVRVKDIAKRQEISVKYMEQIVTILSKAGYLKSIRG 69

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R     T+  +++ TE S     C       CP    C    + R+   A  
Sbjct: 70  PQGGYRLARQPKDYTVGMILRLTEGSLAPVACLEDEPNLCPRQEQCVTLRLWRELDEAIR 129

Query: 120 DVLTQYSIECLVRNRSSI 137
            V+ +Y++E L + +  +
Sbjct: 130 GVVDKYTLEDLAQWQQEM 147


>gi|323489216|ref|ZP_08094448.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
 gi|323397103|gb|EGA89917.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
          Length = 144

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y      D    I +I+EA  IS+  L K+   L KAG ++TVRG
Sbjct: 1   MRLTMYTDFSLRVLIYLGTKKPDKLTTIQEISEAYNISKNHLTKVTFELGKAGFIQTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      I +  VV+  E+ F + ECF      CP+   CGL  VL KAL+A+ 
Sbjct: 61  RGGGIRLADLPQNINVGTVVRKMEDDFHLVECFDPATNRCPISPVCGLRGVLGKALHAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++E L+ N+  +++I 
Sbjct: 121 TVLDEYTLEDLLFNKEGLREIL 142


>gi|157827027|ref|YP_001496091.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389]
 gi|157802331|gb|ABV79054.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389]
          Length = 149

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 69/134 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A        I +IAE   IS   L K++  L + G + + +G+
Sbjct: 14  MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 73

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P   I + D+++  E +  + ECF      C +  SC     +++A NAF  
Sbjct: 74  GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 133

Query: 121 VLTQYSIECLVRNR 134
            L  Y++E  + N+
Sbjct: 134 TLNNYTLEDAINNK 147


>gi|167629932|ref|YP_001680431.1| transcriptional regulator, rrf2 family [Heliobacterium
           modesticaldum Ice1]
 gi|167592672|gb|ABZ84420.1| transcriptional regulator, rrf2 family [Heliobacterium
           modesticaldum Ice1]
          Length = 150

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+     P  +  +AE   ISE +L +I+  L KAG+V ++RG
Sbjct: 1   MKLSTKGQYGVRAMFELAMQYGQGPVSLKLVAERQDISEHYLEQIIAGLRKAGLVNSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R   +IT+ D+++  E      +C        C     C    V  K  ++ 
Sbjct: 61  AQGGYVLARDPAEITVGDIIRVLEGPVAPVDCVNDDIPERCTRASQCISKRVWAKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+   ++  + ++   +K
Sbjct: 121 EQVIDSITLADMCKDAEKMK 140


>gi|56420273|ref|YP_147591.1| hypothetical protein GK1738 [Geobacillus kaustophilus HTA426]
 gi|261419938|ref|YP_003253620.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC61]
 gi|297530100|ref|YP_003671375.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. C56-T3]
 gi|319766752|ref|YP_004132253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC52]
 gi|81347283|sp|Q5KZ63|NSRR_GEOKA RecName: Full=HTH-type transcriptional regulator nsrR
 gi|56380115|dbj|BAD76023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261376395|gb|ACX79138.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC61]
 gi|297253352|gb|ADI26798.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           C56-T3]
 gi|317111618|gb|ADU94110.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC52]
          Length = 147

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  T+Y +RVL++  A+  +    I  IA A  ISE  L KI+  L K G +ET+RG
Sbjct: 1   MQLTNYTEYALRVLLFLGALDEEEKTNIKDIAAAFSISEHHLSKIVYELGKLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +   +I I  VV+ TEE+  + ECFA+H  +C L   C L   L +AL AF 
Sbjct: 61  RNGGIRLAKRPAEIVIGAVVRETEENLSLVECFAAHGNECVLTPVCRLRFALHEALEAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ +R+S++ + 
Sbjct: 121 RVLDAYTLADLLEDRASLRSLL 142


>gi|157691675|ref|YP_001486137.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680433|gb|ABV61577.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 143

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y A   N+  + I QIA+   IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +VV+ TE+   + ECF   K  C +   C L  VL +AL+A+ 
Sbjct: 61  RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY+++ L +N+ +++++ 
Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142


>gi|134094873|ref|YP_001099948.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133738776|emb|CAL61823.1| HTH-type transcriptional regulator nsrR [Herminiimonas
           arsenicoxydans]
          Length = 159

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 75/136 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY  ++ D    I  IA+   IS+  L K++  L  +G+VETVRGR
Sbjct: 1   MRLTSYTDYALRTLMYLGMNRDNLVTIQDIADLHGISKNHLMKVVHQLGLSGMVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      I I +VV+ TE  FF+AECF      C    SC L  VL  A+ A+  
Sbjct: 61  NGGLKLGHEPADINIGEVVRNTETDFFMAECFDPASNACVYAPSCILKGVLNDAIEAYLA 120

Query: 121 VLTQYSIECLVRNRSS 136
           VL   ++  L+  +++
Sbjct: 121 VLNNVTLADLIAQKNA 136


>gi|332981928|ref|YP_004463369.1| BadM/Rrf2 family transcriptional regulator [Mahella australiensis
           50-1 BON]
 gi|332699606|gb|AEE96547.1| transcriptional regulator, BadM/Rrf2 family [Mahella australiensis
           50-1 BON]
          Length = 149

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  ++  A++  + P  +  +AE   ISE +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLTAMLDLALNYGEEPVALKNVAERQGISEPYLEQLIAGLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E      +C   +  + C     C    +  K  ++ 
Sbjct: 61  AQGGYILAYPPDKITVGDVMRVLEGPLAPVDCVIENEPVSCEKADHCVTRIIWEKIRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+   +++ +V   + I 
Sbjct: 121 NQVVDSITLQDMVDEYNRIN 140


>gi|313905467|ref|ZP_07838831.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469651|gb|EFR64989.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 144

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+H++  P RI  I+    IS  +L +I+  LV+A  +++VRG
Sbjct: 1   MKISTKGRYALRMMLDIALHDNGVPVRIKDISARQEISLKYLEQIVSALVRAKYLKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + A + T+ D+++ TE S    EC A    DCP  GSC    +  +   A  
Sbjct: 61  PQGGYLLAKKASEYTVGDILRVTEGSLSPVECLAGDVNDCPRRGSCVTLRLWEELDEAIS 120

Query: 120 DVLTQYSIECL 130
            V+  Y+IE L
Sbjct: 121 KVVDSYTIEDL 131


>gi|298290421|ref|YP_003692360.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296926932|gb|ADH87741.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 151

 Score =  177 bits (449), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RV++Y A   D P  IS++A A  IS+  L K++  L +AG V + RGR
Sbjct: 1   MRLTRYSDYAMRVMLYLAARGDRPCSISEMAAAYGISQNHLMKVMNDLGRAGYVASTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA++I + D+++ TE+   + +C       C L   CGL+SVL +AL AF  
Sbjct: 61  NGGFRLARPANEIVVGDLLRHTEDDLDLVDC-----PRCVLSRGCGLSSVLDEALMAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  L+  R   + + 
Sbjct: 116 VLDRYTLADLIDRRQGFQSLL 136


>gi|119944403|ref|YP_942083.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
           ingrahamii 37]
 gi|119863007|gb|ABM02484.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
           ingrahamii 37]
          Length = 147

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 88/144 (61%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +R+L+Y AI+ND  + I++IA++  IS+  L KI+Q L   G +  +RG+
Sbjct: 1   MHITRYTDYSLRILIYLAINNDQLSTINEIAQSYHISKNHLMKIVQQLNVKGYLLAIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L R    I I  +V+  E+S  + ECF+ +   C +  SC L  +  +A  +FF+
Sbjct: 61  NGGIKLNRDPGDINIGSLVREMEDSNKLVECFSDNN-HCVISPSCQLKGIFAEAQESFFN 119

Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142
            L +Y++  L  V+ ++ + ++ +
Sbjct: 120 TLDKYTLADLVAVKRQTELGELLD 143


>gi|163868066|ref|YP_001609270.1| iron-responsive transcriptional regulator [Bartonella tribocorum
           CIP 105476]
 gi|161017717|emb|CAK01275.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 144

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +R+S+IA+A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCADNQGSLSRVSEIAKAYAVSELFLFKILQPLVQAGFIQTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF + +  CPL+  C L   L+KAL+AFFD
Sbjct: 61  NGGVKLAKPATEISVADVLKVTEDNFSLAECFDNAEPTCPLIDFCSLNIALQKALSAFFD 120

Query: 121 VLTQYSIECLVR 132
           VL+  S+  L R
Sbjct: 121 VLSVISLADLQR 132


>gi|302871528|ref|YP_003840164.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574387|gb|ADL42178.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 150

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R +   A+H ++    +  IAE   ISE +L +++  L KAG+V+++RG 
Sbjct: 3   RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L R   +ITI ++++A E S   +EC     K+DCP    C    V  K   A  
Sbjct: 63  QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122

Query: 120 DVLTQYSIECLVRNRSSI 137
           +V+   +++ LV +   +
Sbjct: 123 NVVDSVTLQNLVDDYKKM 140


>gi|260438134|ref|ZP_05791950.1| iron-sulfur cluster assembly transcription factor IscR
           [Butyrivibrio crossotus DSM 2876]
 gi|292809459|gb|EFF68664.1| iron-sulfur cluster assembly transcription factor IscR
           [Butyrivibrio crossotus DSM 2876]
          Length = 144

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++ ND P  I +IA    ISE +L +I+  L  AG V ++RG
Sbjct: 1   MKVSTKGRYALRLMIDIAVNSNDKPVSIKEIARRQGISEKYLEQIISILNSAGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   + T+  +++ TE S     C   + + C  V +C    V R+  +A  
Sbjct: 61  AQGGYVLRKEPSEYTVGMILRLTEGSLAPVACIEDNVVQCDRVENCATIEVWRRLNDAIN 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            V+   ++  LV  +++ K+ + 
Sbjct: 121 GVVDNITLADLVEWQNNNKENYT 143


>gi|194014188|ref|ZP_03052805.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
           7061]
 gi|194013214|gb|EDW22779.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
           7061]
          Length = 143

 Score =  176 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+ +RVL+Y A   N+  + I QIA+   IS+  L K++  L K G VET+RG
Sbjct: 1   MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  + I I +VV+ TE+   + ECF   K  C +   C L  VL +AL A+ 
Sbjct: 61  RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y+++ L +N+ +++++ 
Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142


>gi|218134234|ref|ZP_03463038.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991609|gb|EEC57615.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
           43243]
          Length = 144

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A++N   P R+  I++   IS+ +L +I+  L KAG V ++RG
Sbjct: 1   MKISTRGRYALRMMLDLAVNNNGEPIRLKDISKRQGISDKYLEQIISILNKAGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   + T+  +++ TE S     C      DC     C    +  K  +A  
Sbjct: 61  PQGGYMLNREPKEYTVGMILRLTEGSLAPVACLDYEPNDCERRNECVTLILWEKLNDAIK 120

Query: 120 DVLTQYSIECLVR 132
            V+   +++ LV+
Sbjct: 121 SVVDNITLQDLVQ 133


>gi|304393239|ref|ZP_07375167.1| protein Aau3 [Ahrensia sp. R2A130]
 gi|303294246|gb|EFL88618.1| protein Aau3 [Ahrensia sp. R2A130]
          Length = 158

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK+T+Y +R+LMYCA H     R+S +A    +S+ F+ K+LQ   KAG V+T+RGR
Sbjct: 1   MQITKQTNYALRMLMYCAAHEGS-VRLSDVATFYGLSQSFMHKVLQTTSKAGFVKTMRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP ++IT+ +VV+A E+ F +AECF      CPL  SCGL     +AL+AF  
Sbjct: 60  SGGLMLARPPEEITVGEVVRAVEDRFEMAECF-REDTTCPLEQSCGLNGAFHEALDAFLT 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
           VL +++I  +   R++I  +
Sbjct: 119 VLDKHTIADITNERANINVL 138


>gi|299538188|ref|ZP_07051473.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298726390|gb|EFI66980.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 145

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y  A  +   + I +I++A  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           +VL QY+++  + ++  +  + 
Sbjct: 121 NVLDQYTLDDFLHSKEKLMALL 142


>gi|171915867|ref|ZP_02931337.1| HTH-type transcriptional regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 160

 Score =  175 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 78/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +DY +RVLMY A        +S++ +A  +S   L KI+  L K G +   RGR
Sbjct: 1   MELSRFSDYSLRVLMYAAAREHEKVTLSELTQAYRVSHHHLVKIVHFLGKQGYLSNRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I + DV++ TE  F + ECF      C L  +C L  V R+A +AF D
Sbjct: 61  SGGIRLGRAPRDIKVGDVIRHTETHFNLVECFDPANDLCKLSPTCRLRGVFREARDAFLD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++E LV +   + ++ +
Sbjct: 121 VLDHYTLEDLVVDGKPLLRLLS 142


>gi|91205424|ref|YP_537779.1| putative transcriptional regulator [Rickettsia bellii RML369-C]
 gi|91068968|gb|ABE04690.1| Putative transcriptional regulator [Rickettsia bellii RML369-C]
          Length = 136

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 69/134 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A        I +IAE   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P   I + D+++  E +  + ECF      C +  SC     +++A NAF  
Sbjct: 61  GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 120

Query: 121 VLTQYSIECLVRNR 134
            L  Y++E  + N+
Sbjct: 121 TLNNYTLEDAINNK 134


>gi|311695841|gb|ADP98714.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
          Length = 145

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A+  D    I +IA++  IS+  L K++  L K G +ET+RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAVQGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL R    I+I  +V+ TE+   + ECF+S K  C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHRSPSDISIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119

Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
           VL +Y++  ++  ++R  + ++  
Sbjct: 120 VLDKYTLADVIQEQHRPQLLRLLQ 143


>gi|241765268|ref|ZP_04763249.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241365059|gb|EER59951.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 162

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  IS++AE+  IS   L KI+Q L   G++ET R
Sbjct: 1   MRLTQWTDYTLRVLMYCAASEGRVQPVTISEVAESYGISRSHLTKIVQELSAQGLLETTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA  I I  VV+ATE  F + ECF +    C L   C L  VL +A+ AF
Sbjct: 61  GRGGGMRLMKPAGDINIGAVVRATETDFNLVECFDAEHNQCRLSAHCYLKGVLGQAMQAF 120

Query: 119 FDVLTQYSIECLVRNR 134
             VL + ++  L+   
Sbjct: 121 IAVLDKVTLADLLTQP 136


>gi|325265021|ref|ZP_08131748.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324029711|gb|EGB90999.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 152

 Score =  175 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A H++  P  I+ I++   ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQHSEADPVSITSISDRQGISERYLEQLMSMLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L +  ++I++ DV++A E S    EC   H  + C    SC    V ++   + 
Sbjct: 61  AGGGYVLAKDLEEISVGDVLRALEGSLEPVECSGLHPEEGCKAADSCVTKYVWQRINESI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
              + +  +  LV     +
Sbjct: 121 NQTVDEMKLAQLVEESKKM 139


>gi|123440766|ref|YP_001004758.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|189030891|sp|A1JIS1|NSRR_YERE8 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|122087727|emb|CAL10512.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 141

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|225175552|ref|ZP_03729546.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168881|gb|EEG77681.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 149

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+H  +    +  +A+   ISE +L  +   L KAG++ +VRG
Sbjct: 1   MRLSTKGRYGVRAMFDLALHSGEGAIALKSVAQREHISEKYLEHLFASLKKAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG RL RP ++IT+ D+++  E      EC         C     C + S+     + 
Sbjct: 61  AQGGYRLARPPEEITLGDIIRVLEGPIAPTECVIDDDGHESCERSTDCVMRSIWGNVRDQ 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             ++L   ++  +V  +  +
Sbjct: 121 INEILDGITLAQIVEEQRKM 140


>gi|163743993|ref|ZP_02151362.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161382753|gb|EDQ07153.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
          Length = 154

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IA  C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA +I I DV +  E +  + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   ++E L+ +  ++  +F 
Sbjct: 121 SLDGITLEALICDNDALFALFQ 142


>gi|302392704|ref|YP_003828524.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
 gi|302204781|gb|ADL13459.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
           arabaticum DSM 5501]
          Length = 149

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A+   + P  + +IAE   IS+ +L +++  L    +VE+VRG
Sbjct: 1   MQLSTKGRYGVRAMFDLALQQKEGPIPLKEIAERQKISDNYLEQLIAVLKNNRLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P ++I+I D+++A E    +A+C       C    +C +  + +K      
Sbjct: 61  AYGGYLLAKPPEEISIGDIIRALEGPIDLADCVGGR--SCEFEDNCIVELIWQKVKKEID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D+L   ++E L++  ++ ++
Sbjct: 119 DILDSITLEDLLQEAANAQQ 138


>gi|332527665|ref|ZP_08403710.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332112067|gb|EGJ12043.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 155

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I +IA     SE  L K++  L   G++ TVRG+
Sbjct: 1   MKLTSFTDYSLRVLIYLATRPGRRATIGEIAAKFSASENHLTKVVHFLGTEGVLATVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP   I + D+V+ TE     AECF S    C +   C L  VL +A+ AF+ 
Sbjct: 61  GGGLGLARPPQDIVVGDIVRRTEGEAMPAECFGSGGG-CAIAPCCRLRGVLGEAVEAFYA 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++E LV NR  +  I 
Sbjct: 120 VLDRYTLEDLVANRDQLDAIL 140


>gi|238755908|ref|ZP_04617236.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
           29473]
 gi|238705867|gb|EEP98256.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
           29473]
          Length = 141

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPPGQMTSISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAENIRIGDVVRELE-PLSLVNCCSDF---CHITPACRLKQVLHQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ + + K+ 
Sbjct: 117 KELDNYTLADMVKDNAPLYKLL 138


>gi|291523269|emb|CBK81562.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
           GD/7]
          Length = 143

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A ++   P RI  IA    IS  +L +I+  L KAG V+++RG
Sbjct: 1   MKISTRGRYALRMMLDIATNDHGEPVRIKDIAARQDISVKYLEQIVSVLTKAGYVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R     T+  +++ TE       C   +  DCP +  C    + ++   A  
Sbjct: 61  PQGGYRLARLPKDYTVGMILRLTEGDLSPVSC-TDNNYDCPKMQDCVTIRIWKELDEAIN 119

Query: 120 DVLTQYSIECLVRNRSS 136
            V+ +Y++E L+  + +
Sbjct: 120 SVIDKYTLEDLLDWQDA 136


>gi|270265005|ref|ZP_06193268.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040939|gb|EFA14040.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 141

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I + DVV+A E    +  C +     C +  +C L  VL + +  F 
Sbjct: 61  KNGGIRLGKPAETIRLGDVVRALE-PLSLVNCNSDF---CHITPACRLKQVLHQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V +   + K+ 
Sbjct: 117 EELDSHTLADMVEDNPPLYKLL 138


>gi|74318032|ref|YP_315772.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057527|gb|AAZ97967.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 156

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 79/139 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY A H D    IS+IAE   IS+  L K++  L  +G+V+T+RGR
Sbjct: 1   MRLTTYTDYALRTLMYLATHRDRLVTISEIAEVHGISKNHLMKVVYQLGLSGLVDTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +IT+ +VV++TE  F +AECF      C    +C L  VL  A  A+  
Sbjct: 61  NGGLRLKREPTEITVGEVVRSTETDFDMAECFDPSGDRCLYSPACVLKDVLSSATLAYLG 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL + ++  LV      KK
Sbjct: 121 VLDKVTLGDLVGGGRGRKK 139


>gi|169829842|ref|YP_001700000.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
           C3-41]
 gi|168994330|gb|ACA41870.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
           C3-41]
          Length = 145

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y  A  +   + I +I+EA  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y+++  + ++  +  + 
Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142


>gi|260431455|ref|ZP_05785426.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415283|gb|EEX08542.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 148

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHPDRLVTKSEIAEVCNISENHLAQVINQLSQLGYLSTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQI I  V +  E    +AECFA     CPL  +C L   L+ A   FF 
Sbjct: 61  NGGMELGRPADQIRIGSVFRHVEGDLPIAECFADADNTCPLTDACRLRLALQDAAEVFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + +++ LV +   + KI  
Sbjct: 121 SLDEITLDALVCDNDPLLKILQ 142


>gi|163736848|ref|ZP_02144266.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389452|gb|EDQ13803.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 154

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     S+IA  C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA +I I DV +  E +  + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   ++E L+ +  ++  +F 
Sbjct: 121 SLDGITLEALICDNDALFALFQ 142


>gi|325678776|ref|ZP_08158374.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
           albus 8]
 gi|324109280|gb|EGC03498.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
           albus 8]
          Length = 144

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A H  D    I  IAE   IS+ +L +I+  L +AG V ++RG
Sbjct: 1   MKISTKGRYALRLMTDLAEHHQDGYVPIKVIAERQNISDKYLEQIISILSRAGYVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P +  T+  +++ TE S     C  + +  C    +C    +  K   A  
Sbjct: 61  AGGGYMLAYPPENYTVGMILRLTEGSLAPVACLETDENLCERAENCPTLFIWEKLYAAIN 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DV+   ++  +V  +++    +N
Sbjct: 121 DVVDNITVADIVARKTNAGDFYN 143


>gi|266623212|ref|ZP_06116147.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
 gi|288865011|gb|EFC97309.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
          Length = 144

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 68/137 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  A+H     +I+Q+AE   IS+ +L +I+  L +AG V+++RG 
Sbjct: 1   MKISTKGRYALRMMLEFALHPGECTKINQVAERQQISDKYLEQIVTILSRAGYVKSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +     T+  +++ TE S     C       C   G C   +V ++   A   
Sbjct: 61  QGGYYLTKEPSDYTVGMILRLTEGSLAPVACMEDELNQCIRSGHCATLTVWKQLDQAING 120

Query: 121 VLTQYSIECLVRNRSSI 137
           V+   ++  LV  +  +
Sbjct: 121 VVDNITLADLVEEQKKL 137


>gi|157368684|ref|YP_001476673.1| transcriptional repressor NsrR [Serratia proteamaculans 568]
 gi|189030889|sp|A8G8V5|NSRR_SERP5 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|157320448|gb|ABV39545.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 141

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I + DVV+A E    +  C   +   C +  +C L  VL++ +  F 
Sbjct: 61  KNGGIRLGKPAETIRLGDVVRALE-PLSLVNC---NSTFCHITPACRLKQVLQQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V +  S+ K+ 
Sbjct: 117 EELDSHTLADMVEDNPSLYKLL 138


>gi|148652572|ref|YP_001279665.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
           PRwf-1]
 gi|148571656|gb|ABQ93715.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
           PRwf-1]
          Length = 175

 Score =  173 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  +DY +R LMY A+  D      I+ IA +  IS   L KI+  L + G +E++R
Sbjct: 1   MRLTNYSDYALRTLMYLAVIPDRNTLATITDIANSYQISRSHLTKIIHQLAQIGYIESIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------------CP 100
           G+ GG+RL + A  I + +V++ TE  F V  CF +   D                  C 
Sbjct: 61  GKNGGIRLAKAAQDINLGEVIRQTEPDFHVVPCFPAPGCDAQSRSNSKSKAQPKPADYCA 120

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           +   C L SV  +A  AF  V+  Y++  +V N  ++ +I 
Sbjct: 121 ITPVCKLKSVFAEATGAFLKVMDNYTLADIVANEEALWQIL 161


>gi|319407107|emb|CBI80744.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 151

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 100/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA    +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQEALSRIPEIASTYAVSELFLFKILQPLVEAGFIKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|254467326|ref|ZP_05080737.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
 gi|206688234|gb|EDZ48716.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
          Length = 149

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA H D     ++IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAAHEDRLVTKAEIAECCNISENHLAQVINQLSQLGYLTTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I DV +  E +  + ECFA     CPL G+C L   L  A  AF+ 
Sbjct: 61  NGGMNLGRPAAEIRIGDVFRDVEGNLPMVECFADADNTCPLAGACRLKVALADAAQAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   S+E LV +   + +I  
Sbjct: 121 SLDDISLEALVCDNHDLLRILQ 142


>gi|126650509|ref|ZP_01722732.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
 gi|126592665|gb|EAZ86664.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
          Length = 145

 Score =  173 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y  A  +   + I +I++A  IS+  L K+   L   G +ET+RG
Sbjct: 1   MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL      ITI ++V+ TEE F + ECF      C +   C L  VL +AL A+ 
Sbjct: 61  RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y+++  + ++  +  + 
Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142


>gi|332160028|ref|YP_004296605.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664258|gb|ADZ40902.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862089|emb|CBX72255.1| HTH-type transcriptional repressor nsrR [Yersinia enterocolitica
           W22703]
          Length = 141

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|238764698|ref|ZP_04625642.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
           33638]
 gi|238697094|gb|EEP89867.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
           33638]
          Length = 141

 Score =  173 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|238797601|ref|ZP_04641098.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
           43969]
 gi|238718598|gb|EEQ10417.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
           43969]
          Length = 141

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPAEQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|238795296|ref|ZP_04638875.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
           29909]
 gi|238725381|gb|EEQ16956.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
           29909]
          Length = 141

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPANQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ S + K+ 
Sbjct: 117 NELDNYTLADMVKDNSPLYKLL 138


>gi|121999179|ref|YP_001003966.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590584|gb|ABM63164.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 152

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 83/142 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RVL++          I  IAE   IS   L K++  L   G VETVRG+
Sbjct: 1   MRLTRHSDYALRVLLFLGAAQGELVTIGAIAERFEISRNHLMKVVNRLAAHGFVETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL +P + I + ++++ TEE F + ECF      C + G+C + +VL +AL+AF  
Sbjct: 61  RGGIRLAQPPETIPLGELLRRTEEDFTLVECFREEDQRCRIEGTCAVRAVLDEALHAFLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  L+ NR ++    N
Sbjct: 121 VLDRYTLADLLHNRGALAVDLN 142


>gi|238787545|ref|ZP_04631343.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
           ATCC 33641]
 gi|238724332|gb|EEQ15974.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
           ATCC 33641]
          Length = 141

 Score =  173 bits (440), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138


>gi|89895173|ref|YP_518660.1| hypothetical protein DSY2427 [Desulfitobacterium hafniense Y51]
 gi|219669600|ref|YP_002460035.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89334621|dbj|BAE84216.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539860|gb|ACL21599.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 146

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 2/146 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  ++  A++  + P  +  IA+   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQLISGLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L + A++I I D+++  E      EC A+   + C     C   S+  K  +  
Sbjct: 61  AQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQKSDYCVTRSIREKVRDPI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
            DVL   S+  LVR+  ++  I + G
Sbjct: 121 EDVLDSISLADLVRDPQTMCTIADPG 146


>gi|237703845|ref|ZP_04534326.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 3_2_53FAA]
 gi|332280962|ref|ZP_08393375.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
           D9]
 gi|226901757|gb|EEH88016.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 3_2_53FAA]
 gi|332103314|gb|EGJ06660.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
           D9]
          Length = 161

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG+
Sbjct: 22  QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F  
Sbjct: 82  NGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158


>gi|322831162|ref|YP_004211189.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166363|gb|ADW72062.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 141

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +D    ISQ+ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDDQMTNISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG++L +PA+ I I DVV+  E    +  C +     C +  +C L  VL  A+  F 
Sbjct: 61  KNGGIKLGKPAETIRIGDVVRELE-PLSLVNCASDF---CHITPACRLKQVLHTAVEHFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L QY++  +V++ S++ K+ 
Sbjct: 117 DELNQYTLADMVKDNSTLYKLL 138


>gi|119899391|ref|YP_934604.1| AAU3 protein [Azoarcus sp. BH72]
 gi|119671804|emb|CAL95718.1| AAU3 protein precursor [Azoarcus sp. BH72]
          Length = 153

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +RVLMY   H D  + +++IA A  ISE  L K++  L ++G V+T+RG+
Sbjct: 1   MRLSTFSDYCLRVLMYLGEHADRLSTVAEIARAHDISESHLTKVVHQLGRSGYVDTLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +I + +V++ TE  F + ECF      C + G+C L +VL +AL A F 
Sbjct: 61  GGGMRLARAPREIVLGEVLRQTETDFALVECFGDE-PHCYMEGACQLQAVLGEALGAMFR 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL  Y++  L++      ++ 
Sbjct: 120 VLDGYTLADLLQRPDGSTRVL 140


>gi|238786347|ref|ZP_04630282.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
           43970]
 gi|238712746|gb|EEQ04823.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
           43970]
          Length = 141

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       I+Q+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTNITQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+QI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPAEQIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  Y++  +V++ + + K+ 
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138


>gi|238750077|ref|ZP_04611580.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
           43380]
 gi|238711621|gb|EEQ03836.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
           43380]
          Length = 141

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L Y A +       ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA++I I DVV+  E    +  C +     C +  +C L S L +A+ +F 
Sbjct: 61  KNGGIRLGKPANEIRIGDVVRQLE-PLSLVNCSSDF---CHITPACRLKSALNQAVKSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L  Y++  +V++ + + K+ 
Sbjct: 117 DELDNYTLADMVQDNTPLYKLL 138


>gi|194445441|ref|YP_002043622.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195873714|ref|ZP_02698652.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197265870|ref|ZP_03165944.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243076|ref|YP_002218251.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205358148|ref|ZP_02576074.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205360093|ref|ZP_02834507.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224586207|ref|YP_002640006.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|62130446|gb|AAX68149.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194404104|gb|ACF64326.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632977|gb|EDX51431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197244125|gb|EDY26745.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937592|gb|ACH74925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205327229|gb|EDZ13993.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205341100|gb|EDZ27864.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|224470735|gb|ACN48565.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|312915465|dbj|BAJ39439.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222667|gb|EFX47739.1| Nitrite-sensitive transcriptional repressor NsrR [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322717315|gb|EFZ08886.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132705|gb|ADX20135.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 162

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG+
Sbjct: 23  QLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGK 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L   L KA+ +F  
Sbjct: 83  NGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLK 138

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159


>gi|253689808|ref|YP_003018998.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259514610|sp|C6DE26|NSRR_PECCP RecName: Full=HTH-type transcriptional repressor nsrR
 gi|251756386|gb|ACT14462.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 141

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 QELDQYTLADMVKENPPLYKLL 138


>gi|319898771|ref|YP_004158864.1| hypothetical protein BARCL_0601 [Bartonella clarridgeiae 73]
 gi|319402735|emb|CBI76282.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 159

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 102/130 (78%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 9   MRLTKQTNYALRMLMYCASNQGALSRIPEIAKAHAVSELFLFKILQPLVEAGFMQTVRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   DCPL+  CGL +VL+KAL++FFD
Sbjct: 69  NGGVKLAKPAKEISVADVIKITEDNFSMAECFDNKLSDCPLINFCGLNTVLKKALDSFFD 128

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 129 VLSMTSIADL 138


>gi|297616499|ref|YP_003701658.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144336|gb|ADI01093.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 144

 Score =  172 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A+H N+ P  +  +AE   +SE +L +++ PL KAG+V++VRG
Sbjct: 1   MKVSTKGRYGLRAMLDMALHQNEGPMAVHIVAERQGLSERYLEQLMVPLKKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    IT+ ++++A E      +C +     +C     C    +  K  ++ 
Sbjct: 61  PQGGYVLTKKPRDITVGEIIRALEGPIAPVDCVSEQTPEECERAEFCVTRLIWSKMRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
            +VL   S+E L++    I
Sbjct: 121 AEVLDSLSLEDLIQESRKI 139


>gi|158320700|ref|YP_001513207.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140899|gb|ABW19211.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
           oremlandii OhILAs]
          Length = 179

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H  D P  +  +AE   IS+ +L +++  L KAG+V++VRG
Sbjct: 29  MRLSTKGRYGLKAMFDLALHYGDGPISLKSVAERQSISDHYLEQLIAGLRKAGLVKSVRG 88

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L     +IT+ D+++  E     ++C        C     C   +V  K   + 
Sbjct: 89  AQGGYMLAENPSKITVGDIIRVLEGPLGPSDCVLEDEPTTCNNAECCVTRTVWEKIRVSI 148

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            +V+   +++ ++ +   I 
Sbjct: 149 SEVIDSITLQNMLDDYEKIN 168


>gi|319404095|emb|CBI77683.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 151

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 100/130 (76%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA + +  +RI +IA    +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQEALSRIPEIANTYAVSELFLFKILQPLVEAGFMKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F +AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|90419071|ref|ZP_01226982.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337151|gb|EAS50856.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 160

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 103/142 (72%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMYCA +    +RI  IA A   SELFLFKILQPLV+AG+VETVRGR
Sbjct: 7   MRLTRQTNYAIRILMYCASNGGQLSRIKDIAAAYSASELFLFKILQPLVEAGMVETVRGR 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPA  I + +VV+ TEE+F +AECF +  +DCPL+ SC L S LR+ALNAF  
Sbjct: 67  NGGVRLARPAAAINLRNVVEVTEENFALAECFETGAVDCPLIESCELNSALREALNAFLG 126

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L  Y+I+ L+ N++ +++   
Sbjct: 127 ALGNYTIDDLLGNKAFMRRRLG 148


>gi|16767613|ref|NP_463228.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56416158|ref|YP_153233.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161617637|ref|YP_001591602.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|162139505|ref|YP_219230.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167553785|ref|ZP_02347531.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168231405|ref|ZP_02656463.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168239662|ref|ZP_02664720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168245155|ref|ZP_02670087.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263280|ref|ZP_02685253.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449946|ref|YP_002048410.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470152|ref|ZP_03076136.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735133|ref|YP_002117308.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247528|ref|YP_002149281.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197365083|ref|YP_002144720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200387819|ref|ZP_03214431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927167|ref|ZP_03218369.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205355124|ref|YP_002228925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859512|ref|YP_002246163.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238910525|ref|ZP_04654362.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|81361477|sp|Q5PL57|NSRR_SALPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|81520811|sp|Q8ZKA3|NSRR_SALTY RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372261|sp|Q57GL3|NSRR_SALCH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030888|sp|A9N4Z2|NSRR_SALPB RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737674|sp|B5F393|NSRR_SALA4 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737675|sp|B5R0P4|NSRR_SALEP RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737676|sp|B5R9C4|NSRR_SALG2 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737677|sp|B4TFB2|NSRR_SALHS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737678|sp|B5BKI6|NSRR_SALPK RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737679|sp|B4TSF8|NSRR_SALSV RecName: Full=HTH-type transcriptional repressor nsrR
 gi|16422928|gb|AAL23187.1| putative negative regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56130415|gb|AAV79921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161367001|gb|ABX70769.1| hypothetical protein SPAB_05500 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408250|gb|ACF68469.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456516|gb|EDX45355.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710635|gb|ACF89856.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197096560|emb|CAR62170.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211231|gb|ACH48628.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197287648|gb|EDY27039.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199604917|gb|EDZ03462.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323832|gb|EDZ09027.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205274905|emb|CAR39972.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321871|gb|EDZ09710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205334382|gb|EDZ21146.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336063|gb|EDZ22827.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348036|gb|EDZ34667.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206711315|emb|CAR35693.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249457|emb|CBG27322.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996699|gb|ACY91584.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160855|emb|CBW20386.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320088794|emb|CBY98552.1| HTH-type transcriptional repressor nsrR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615529|gb|EFY12449.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618589|gb|EFY15478.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621998|gb|EFY18848.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627722|gb|EFY24513.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631029|gb|EFY27793.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637752|gb|EFY34453.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642416|gb|EFY39020.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644015|gb|EFY40563.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650483|gb|EFY46891.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653553|gb|EFY49881.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659738|gb|EFY55981.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662051|gb|EFY58267.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666200|gb|EFY62378.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672620|gb|EFY68731.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676050|gb|EFY72121.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680534|gb|EFY76572.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684572|gb|EFY80576.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192887|gb|EFZ78113.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197237|gb|EFZ82377.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201646|gb|EFZ86710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206160|gb|EFZ91122.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213168|gb|EFZ97970.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215542|gb|EGA00286.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323227830|gb|EGA11984.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229000|gb|EGA13129.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236388|gb|EGA20464.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238707|gb|EGA22759.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241842|gb|EGA25871.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248009|gb|EGA31946.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254660|gb|EGA38471.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258281|gb|EGA41958.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263573|gb|EGA47094.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265831|gb|EGA49327.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270275|gb|EGA53723.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326630282|gb|EGE36625.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332991178|gb|AEF10161.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 141

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138


>gi|220931730|ref|YP_002508638.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
           H 168]
 gi|219993040|gb|ACL69643.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
           H 168]
          Length = 151

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG+R ++  AIH D     + +IAE   ISE +L ++   L KAG+V++VRG
Sbjct: 1   MKISTRGRYGLRAMVDLAIHQDSGAIPLREIAERQQISEQYLEQLFANLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R AD+IT  DV++  E      +C   +  D C L+  C    +  K     
Sbjct: 61  AHGGYLLNRDADEITAGDVLRTLEGPIAPTDCVLDNDEDVCSLIDKCVTHELWVKLQKQV 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
            ++L   ++  L      + +  N G
Sbjct: 121 SEILDSVTLRDLQERAKELIRNKNKG 146


>gi|237729111|ref|ZP_04559592.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
 gi|226908840|gb|EEH94758.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
          Length = 141

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPAKDIGIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEKNQPLYKLL 138


>gi|51594783|ref|YP_068974.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis IP
           32953]
 gi|150260577|ref|ZP_01917305.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
 gi|153947883|ref|YP_001402601.1| NsrR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|161484881|ref|NP_667973.2| transcriptional repressor NsrR [Yersinia pestis KIM 10]
 gi|161511445|ref|NP_991928.2| transcriptional repressor NsrR [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162100152|ref|YP_653811.2| transcriptional repressor NsrR [Yersinia pestis Antiqua]
 gi|162139427|ref|YP_649219.2| transcriptional repressor NsrR [Yersinia pestis Nepal516]
 gi|167470114|ref|ZP_02334818.1| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1]
 gi|218927582|ref|YP_002345457.1| transcriptional repressor NsrR [Yersinia pestis CO92]
 gi|229836639|ref|ZP_04456805.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
 gi|229840251|ref|ZP_04460410.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842329|ref|ZP_04462484.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903932|ref|ZP_04519045.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
 gi|270489081|ref|ZP_06206155.1| Rrf2 family protein [Yersinia pestis KIM D27]
 gi|81640568|sp|Q66FA9|NSRR_YERPS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372265|sp|Q1C106|NSRR_YERPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372266|sp|Q0WJT1|NSRR_YERPE RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372267|sp|Q1CEG1|NSRR_YERPN RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030892|sp|A7FMX3|NSRR_YERP3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|51588065|emb|CAH19671.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|115346193|emb|CAL19061.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149289985|gb|EDM40062.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
 gi|152959378|gb|ABS46839.1| nitrite-sensitive repressor NsrR [Yersinia pseudotuberculosis IP
           31758]
 gi|229679702|gb|EEO75805.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690639|gb|EEO82693.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696617|gb|EEO86664.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706323|gb|EEO92331.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
 gi|270337585|gb|EFA48362.1| Rrf2 family protein [Yersinia pestis KIM D27]
 gi|320013755|gb|ADV97326.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 141

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F 
Sbjct: 61  KNGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V++ S + K+ 
Sbjct: 117 KELDNYTLADMVKDNSPLYKLL 138


>gi|259416348|ref|ZP_05740268.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
 gi|259347787|gb|EEW59564.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
          Length = 155

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA++       S+IA+ C ISE  L +++  L + G ++T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCALNEGRLVTKSEIAQRCNISENHLAQVVNQLSQLGFLKTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R AD+I I DV +  E    + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGLNLSRSADEICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALSRAGEAFYS 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++E L  +   +++I 
Sbjct: 121 ALDGVTLESLTCDNFDLQRIL 141


>gi|253580123|ref|ZP_04857390.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848642|gb|EES76605.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 144

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A+HN     +I  I+    ISE +L +I+  L KAG V+++RG
Sbjct: 1   MQISTKGRYALRLMLDLAVHNTGELVKIKDISARENISEKYLEQIISSLKKAGYVKSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  +  T+  +++ TE S     C       C   G C    + +    A  
Sbjct: 61  AQGGYMLAREPETYTVGTILRLTEGSMKPVACLEDEPNQCSRAGECVTLRLWKMLDEAIE 120

Query: 120 DVLTQYSIECL 130
            VL + +++ L
Sbjct: 121 GVLDKVTLQDL 131


>gi|227112379|ref|ZP_03826035.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227325972|ref|ZP_03829996.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 141

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|210622565|ref|ZP_03293247.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
 gi|210154148|gb|EEA85154.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
          Length = 155

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++  + P  I  I+E   +SE +L +I   L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLKAMFELALNYGEEPISIKYISEKQNVSERYLEQIFSKLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  D+I++ D++   E    +++C     + C     C    V +K  NA  
Sbjct: 61  SQGGYFLARKPDEISVGDILTVLEGPITISDCLKEEGV-CSNSDKCATRLVWKKMKNAID 119

Query: 120 DVLTQYSIECLVRNR 134
           DV+    ++ +V +R
Sbjct: 120 DVVNTTFLQDMVDDR 134


>gi|120555981|ref|YP_960332.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325830|gb|ABM20145.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
           VT8]
          Length = 145

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A   D    I +IA++  IS+  L K++  L K G +ET+RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAAEGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL      I I  +V+ TE+   + ECF+S K  C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHMAPQDINIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119

Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142
           VL +Y++  ++++  R  + ++  
Sbjct: 120 VLDRYTLADVIQDHHRPQLLRLLQ 143


>gi|258515490|ref|YP_003191712.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779195|gb|ACV63089.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 142

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ + + A+H    P  +  +AE   +SE +L +++  L K+G+V++VRG
Sbjct: 1   MRMSTKGHYGLKAMFFLALHYGPDPIPLKNVAERQGLSENYLEQLIATLRKSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R   +I + D+++  E      EC +      C     C   +V  K  ++ 
Sbjct: 61  AQGGYILARDPSEIKVGDIIRVLEGPIAPLECVSEGVPSVCDQFDFCITRTVWEKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            DVL   S+  + ++    +K
Sbjct: 121 ADVLDSISLADMCQDAEKARK 141


>gi|302389692|ref|YP_003825513.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
 gi|302200320|gb|ADL07890.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
          Length = 150

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   AI+  + P  +  IA+   ISE +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFDLAINYGEGPIPLKSIADRQNISEHYLEQLIMILRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +   +IT+ DV++  E    + +C      ++C    +C +  V  K  ++ 
Sbjct: 61  AQGGYMLAKKPAEITVGDVLRVLEGPIGLVDCVLEQDPLECDKAENCIMRIVWEKIRDSM 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              +   +++ +       K
Sbjct: 121 IAAMDSITLQDMCNEAEKRK 140


>gi|261822840|ref|YP_003260946.1| transcriptional repressor NsrR [Pectobacterium wasabiae WPP163]
 gi|261606853|gb|ACX89339.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           wasabiae WPP163]
          Length = 141

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|302391513|ref|YP_003827333.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
 gi|302203590|gb|ADL12268.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
           arabaticum DSM 5501]
          Length = 153

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG+R ++  A+H D      ++ IAE   ISE +L +++  L KAG+V +VR
Sbjct: 1   MKLSTKGRYGVRAMVDLALHYDDQGATPLNSIAERQNISEHYLEQLIATLRKAGLVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117
           G  GG  L R   +IT+ D+++  E     +EC A   +  C  + SC    + +K  N+
Sbjct: 61  GAYGGYLLARKPAEITVKDIIQELEGPIAPSECVAKESESSCENIESCITRLIWKKLRNS 120

Query: 118 FFDVLTQYSIECL 130
             +VL   ++E L
Sbjct: 121 INEVLNSITLEDL 133


>gi|16763186|ref|NP_458803.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144665|ref|NP_808007.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052276|ref|ZP_03345154.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418156|ref|ZP_03351222.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428666|ref|ZP_03361416.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582913|ref|ZP_03364739.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213648975|ref|ZP_03379028.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852964|ref|ZP_03382496.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289811153|ref|ZP_06541782.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289829975|ref|ZP_06547426.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|81512227|sp|Q8Z183|NSRR_SALTI RecName: Full=HTH-type transcriptional repressor nsrR
 gi|25303603|pir||AG1049 conserved hypothetical protein yjeB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505494|emb|CAD06844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140304|gb|AAO71867.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 141

 Score =  171 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138


>gi|58039326|ref|YP_191290.1| CDG1D protein [Gluconobacter oxydans 621H]
 gi|58001740|gb|AAW60634.1| CDG1D protein [Gluconobacter oxydans 621H]
          Length = 149

 Score =  171 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++  +H  +   I +IA+A  ISE  L K++  L + G V TVRGR
Sbjct: 1   MRLTLHTDYALRVLIHLGVHTSHRVSIREIAQAYRISENHLVKVVHRLGQGGFVTTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+ L RPA +I +  VV+ TE+   + +C   +  D   C L  +C L  VL  AL A
Sbjct: 61  GGGLELARPASEINVGAVVRFTEDDMTLVDCEGRNSTDGTPCVLSPACVLRGVLGDALGA 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
           F  VL +Y++  L+  R +
Sbjct: 121 FLTVLDRYTLADLLTGREA 139


>gi|15804767|ref|NP_290808.1| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933]
 gi|15834408|ref|NP_313181.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           Sakai]
 gi|16132000|ref|NP_418599.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24115533|ref|NP_710043.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 301]
 gi|26251070|ref|NP_757110.1| transcriptional repressor NsrR [Escherichia coli CFT073]
 gi|30065550|ref|NP_839721.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T]
 gi|74314663|ref|YP_313082.1| transcriptional repressor NsrR [Shigella sonnei Ss046]
 gi|82546581|ref|YP_410528.1| transcriptional repressor NsrR [Shigella boydii Sb227]
 gi|82779440|ref|YP_405789.1| transcriptional repressor NsrR [Shigella dysenteriae Sd197]
 gi|89110898|ref|AP_004678.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|91213727|ref|YP_543713.1| transcriptional repressor NsrR [Escherichia coli UTI89]
 gi|110644535|ref|YP_672265.1| transcriptional repressor NsrR [Escherichia coli 536]
 gi|110808096|ref|YP_691616.1| transcriptional repressor NsrR [Shigella flexneri 5 str. 8401]
 gi|117626524|ref|YP_859847.1| transcriptional repressor NsrR [Escherichia coli APEC O1]
 gi|168760419|ref|ZP_02785426.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168784814|ref|ZP_02809821.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC869]
 gi|168801832|ref|ZP_02826839.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC508]
 gi|170083624|ref|YP_001732944.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680746|ref|YP_001746573.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
 gi|191165643|ref|ZP_03027483.1| transcriptional repressor NsrR [Escherichia coli B7A]
 gi|191170792|ref|ZP_03032344.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|191174524|ref|ZP_03036022.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|193066007|ref|ZP_03047065.1| transcriptional repressor NsrR [Escherichia coli E22]
 gi|193070883|ref|ZP_03051815.1| transcriptional repressor NsrR [Escherichia coli E110019]
 gi|194426693|ref|ZP_03059247.1| transcriptional repressor NsrR [Escherichia coli B171]
 gi|194434604|ref|ZP_03066861.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
 gi|215489522|ref|YP_002331953.1| transcriptional repressor NsrR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217325196|ref|ZP_03441280.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218561337|ref|YP_002394250.1| transcriptional repressor NsrR [Escherichia coli S88]
 gi|218692512|ref|YP_002400724.1| transcriptional repressor NsrR [Escherichia coli ED1a]
 gi|218697927|ref|YP_002405594.1| transcriptional repressor NsrR [Escherichia coli 55989]
 gi|218702875|ref|YP_002410504.1| transcriptional repressor NsrR [Escherichia coli IAI39]
 gi|218707789|ref|YP_002415308.1| transcriptional repressor NsrR [Escherichia coli UMN026]
 gi|227886779|ref|ZP_04004584.1| transcriptional repressor NsrR [Escherichia coli 83972]
 gi|238903285|ref|YP_002929081.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|256019823|ref|ZP_05433688.1| transcriptional repressor NsrR [Shigella sp. D9]
 gi|256025113|ref|ZP_05438978.1| transcriptional repressor NsrR [Escherichia sp. 4_1_40B]
 gi|260847008|ref|YP_003224786.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|260858331|ref|YP_003232222.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|260870914|ref|YP_003237316.1| putative DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|261225298|ref|ZP_05939579.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255450|ref|ZP_05947983.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285590|ref|YP_003502408.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402805|ref|ZP_06646902.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
 gi|293407905|ref|ZP_06651745.1| transcriptional repressor NsrR [Escherichia coli B354]
 gi|293417681|ref|ZP_06660303.1| transcriptional repressor NsrR [Escherichia coli B185]
 gi|293476489|ref|ZP_06664897.1| transcriptional repressor NsrR [Escherichia coli B088]
 gi|298378335|ref|ZP_06988219.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
 gi|301028000|ref|ZP_07191284.1| Rrf2 family protein [Escherichia coli MS 196-1]
 gi|306815607|ref|ZP_07449756.1| transcriptional repressor NsrR [Escherichia coli NC101]
 gi|307140872|ref|ZP_07500228.1| transcriptional repressor NsrR [Escherichia coli H736]
 gi|309787682|ref|ZP_07682293.1| rrf2 family protein [Shigella dysenteriae 1617]
 gi|312974014|ref|ZP_07788185.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|331644925|ref|ZP_08346042.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
 gi|331650303|ref|ZP_08351375.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
 gi|331656006|ref|ZP_08356994.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
 gi|331660753|ref|ZP_08361685.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
 gi|331665842|ref|ZP_08366736.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
 gi|331671083|ref|ZP_08371916.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
 gi|331671327|ref|ZP_08372125.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
 gi|331680308|ref|ZP_08380967.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
 gi|331681197|ref|ZP_08381834.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
 gi|84028053|sp|P0AF65|NSRR_ECO57 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028054|sp|P0AF64|NSRR_ECOL6 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028055|sp|P0AF63|NSRR_ECOLI RecName: Full=HTH-type transcriptional repressor nsrR
 gi|84028056|sp|P0AF66|NSRR_SHIFL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372258|sp|Q0T9L5|NSRR_ECOL5 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372259|sp|Q1R382|NSRR_ECOUT RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372262|sp|Q31TA8|NSRR_SHIBS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372263|sp|Q328F7|NSRR_SHIDS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|119372264|sp|Q3YUG5|NSRR_SHISS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|122956960|sp|Q0SXA4|NSRR_SHIF8 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030884|sp|A1AJ83|NSRR_ECOK1 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736213|sp|B7MLI3|NSRR_ECO45 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736215|sp|B7NTN4|NSRR_ECO7I RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736775|sp|B1XDS9|NSRR_ECODH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737668|sp|B7NGB2|NSRR_ECOLU RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737670|sp|B1LQJ8|NSRR_ECOSM RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768044|sp|B7UQI7|NSRR_ECO27 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768045|sp|B7LC37|NSRR_ECO55 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|254768046|sp|B7MSJ6|NSRR_ECO81 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|259514607|sp|C4ZR55|NSRR_ECOBW RecName: Full=HTH-type transcriptional repressor nsrR
 gi|12519166|gb|AAG59374.1|AE005651_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111502|gb|AAN83684.1|AE016771_195 Hypothetical protein yjeB [Escherichia coli CFT073]
 gi|537019|gb|AAA97074.1| yjeB [Escherichia coli str. K-12 substr. MG1655]
 gi|912442|dbj|BAA01776.1| ORF-1 [Shigella flexneri]
 gi|1790621|gb|AAC77135.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364631|dbj|BAB38577.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054861|gb|AAN45750.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043814|gb|AAP19533.1| hypothetical protein S4601 [Shigella flexneri 2a str. 2457T]
 gi|73858140|gb|AAZ90847.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81243588|gb|ABB64298.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81247992|gb|ABB68700.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|85676929|dbj|BAE78179.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|91075301|gb|ABE10182.1| hypothetical protein UTI89_C4778 [Escherichia coli UTI89]
 gi|110346127|gb|ABG72364.1| putative transcriptional regulator YjeB [Escherichia coli 536]
 gi|110617644|gb|ABF06311.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515648|gb|ABJ03723.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|169891459|gb|ACB05166.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170518464|gb|ACB16642.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
 gi|189368884|gb|EDU87300.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374986|gb|EDU93402.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC869]
 gi|189376056|gb|EDU94472.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904338|gb|EDV64047.1| transcriptional repressor NsrR [Escherichia coli B7A]
 gi|190905204|gb|EDV64845.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|190909016|gb|EDV68603.1| transcriptional repressor NsrR [Escherichia coli F11]
 gi|192926330|gb|EDV80966.1| transcriptional repressor NsrR [Escherichia coli E22]
 gi|192955829|gb|EDV86300.1| transcriptional repressor NsrR [Escherichia coli E110019]
 gi|194415432|gb|EDX31700.1| transcriptional repressor NsrR [Escherichia coli B171]
 gi|194417189|gb|EDX33301.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
 gi|209750218|gb|ACI73416.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750220|gb|ACI73417.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750222|gb|ACI73418.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|209750224|gb|ACI73419.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|215267594|emb|CAS12049.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321417|gb|EEC29841.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354659|emb|CAV01655.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
 gi|218368106|emb|CAR05913.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|218372861|emb|CAR20741.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
 gi|218430076|emb|CAR10921.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
 gi|218434886|emb|CAR15824.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
 gi|222035948|emb|CAP78693.1| HTH-type transcriptional repressor nsrR [Escherichia coli LF82]
 gi|227836352|gb|EEJ46818.1| transcriptional repressor NsrR [Escherichia coli 83972]
 gi|238862328|gb|ACR64326.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|257756980|dbj|BAI28482.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O26:H11 str. 11368]
 gi|257762155|dbj|BAI33652.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O103:H2 str. 12009]
 gi|257767270|dbj|BAI38765.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O111:H- str. 11128]
 gi|260450995|gb|ACX41417.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1]
 gi|281181274|dbj|BAI57604.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281603640|gb|ADA76624.1| HTH-type transcriptional repressor nsrR [Shigella flexneri 2002017]
 gi|284924360|emb|CBG37476.1| transcriptional repressor [Escherichia coli 042]
 gi|290765463|gb|ADD59424.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320942|gb|EFE60384.1| transcriptional repressor NsrR [Escherichia coli B088]
 gi|291429720|gb|EFF02734.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
 gi|291430399|gb|EFF03397.1| transcriptional repressor NsrR [Escherichia coli B185]
 gi|291472156|gb|EFF14638.1| transcriptional repressor NsrR [Escherichia coli B354]
 gi|294490746|gb|ADE89502.1| transcriptional repressor NsrR [Escherichia coli IHE3034]
 gi|298280669|gb|EFI22170.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
 gi|299878910|gb|EFI87121.1| Rrf2 family protein [Escherichia coli MS 196-1]
 gi|305851269|gb|EFM51724.1| transcriptional repressor NsrR [Escherichia coli NC101]
 gi|307556345|gb|ADN49120.1| putative transcriptional regulator YjeB [Escherichia coli ABU
           83972]
 gi|307629250|gb|ADN73554.1| transcriptional repressor NsrR [Escherichia coli UM146]
 gi|308924432|gb|EFP69928.1| rrf2 family protein [Shigella dysenteriae 1617]
 gi|310331548|gb|EFP98804.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|312948827|gb|ADR29654.1| transcriptional repressor NsrR [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313646347|gb|EFS10809.1| rrf2 family protein [Shigella flexneri 2a str. 2457T]
 gi|315138732|dbj|BAJ45891.1| transcriptional repressor NsrR [Escherichia coli DH1]
 gi|315617591|gb|EFU98197.1| rrf2 family protein [Escherichia coli 3431]
 gi|320180691|gb|EFW55618.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella boydii
           ATCC 9905]
 gi|320187056|gb|EFW61767.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella flexneri
           CDC 796-83]
 gi|320190690|gb|EFW65340.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320193558|gb|EFW68195.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           WV_060327]
 gi|320200692|gb|EFW75278.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           EC4100B]
 gi|320638936|gb|EFX08582.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           G5101]
 gi|320644305|gb|EFX13370.1| transcriptional repressor NsrR [Escherichia coli O157:H- str.
           493-89]
 gi|320649623|gb|EFX18147.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. H
           2687]
 gi|320655019|gb|EFX22980.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660526|gb|EFX27987.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665795|gb|EFX32832.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156005|gb|EFZ42167.1| rrf2 family protein [Escherichia coli EPECa14]
 gi|323161967|gb|EFZ47839.1| rrf2 family protein family protein [Escherichia coli E128010]
 gi|323166661|gb|EFZ52419.1| rrf2 family protein [Shigella sonnei 53G]
 gi|323176063|gb|EFZ61655.1| rrf2 family protein family protein [Escherichia coli 1180]
 gi|323189943|gb|EFZ75221.1| rrf2 family protein family protein [Escherichia coli RN587/1]
 gi|323935408|gb|EGB31752.1| transcriptional regulator [Escherichia coli E1520]
 gi|323940097|gb|EGB36291.1| transcriptional regulator [Escherichia coli E482]
 gi|323950753|gb|EGB46631.1| transcriptional regulator [Escherichia coli H252]
 gi|323955465|gb|EGB51229.1| transcriptional regulator [Escherichia coli H263]
 gi|323965564|gb|EGB61018.1| transcriptional regulator [Escherichia coli M863]
 gi|323975481|gb|EGB70582.1| transcriptional regulator [Escherichia coli TW10509]
 gi|326345490|gb|EGD69233.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. 1125]
 gi|326346653|gb|EGD70387.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           O157:H7 str. 1044]
 gi|327250118|gb|EGE61837.1| rrf2 family protein family protein [Escherichia coli STEC_7v]
 gi|330908520|gb|EGH37039.1| nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
           AA86]
 gi|331035900|gb|EGI08138.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
 gi|331040697|gb|EGI12855.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
 gi|331046360|gb|EGI18450.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
 gi|331051795|gb|EGI23834.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
 gi|331056893|gb|EGI28887.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
 gi|331061672|gb|EGI33598.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
 gi|331071172|gb|EGI42529.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
 gi|331071771|gb|EGI43107.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
 gi|331081418|gb|EGI52579.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
 gi|332083175|gb|EGI88406.1| rrf2 family protein family protein [Shigella boydii 5216-82]
 gi|332083816|gb|EGI89034.1| rrf2 family protein family protein [Shigella dysenteriae 155-74]
 gi|332087072|gb|EGI92206.1| rrf2 family protein family protein [Shigella boydii 3594-74]
 gi|332346255|gb|AEE59589.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749054|gb|EGJ79477.1| rrf2 family protein family protein [Shigella flexneri K-671]
 gi|332749323|gb|EGJ79744.1| rrf2 family protein family protein [Shigella flexneri 4343-70]
 gi|332761860|gb|EGJ92134.1| rrf2 family protein family protein [Shigella flexneri 2747-71]
 gi|332763226|gb|EGJ93469.1| nsrR [Shigella flexneri 2930-71]
 gi|333009143|gb|EGK28599.1| rrf2 family protein family protein [Shigella flexneri K-218]
 gi|333011981|gb|EGK31366.1| rrf2 family protein family protein [Shigella flexneri K-304]
          Length = 141

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|56477058|ref|YP_158647.1| transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56313101|emb|CAI07746.1| predicted transcriptional regulator [Aromatoleum aromaticum EbN1]
          Length = 153

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 80/139 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L++  +H +    I QIA+   IS+  L KI+  L   G+VET RGR
Sbjct: 1   MKLTDYTDYTLRTLIFLGLHRNEQVTIQQIADGYDISKNHLMKIIHRLSLDGLVETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +P D+I I  VV+A E+ F + ECF+     C L   C L +  R AL AFF 
Sbjct: 61  SGGVRLRKPPDEINIGQVVRAAEQEFALVECFSRVNNRCVLSPVCELQATFRDALEAFFA 120

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL + ++  ++RN   ++ 
Sbjct: 121 VLDKRTLADILRNAEEVRP 139


>gi|187731546|ref|YP_001882869.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
 gi|226737680|sp|B2TY53|NSRR_SHIB3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|187428538|gb|ACD07812.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
          Length = 141

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|56695347|ref|YP_165695.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56677084|gb|AAV93750.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 148

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 80/142 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LM+CA H       S+IAE C +SE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMFCAAHPGRLVTKSEIAEVCNVSENHLAQVINQLSQLGFLTTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L   AD I I +V +  E +  + ECFA     CPL  +C L   LR A  AF+ 
Sbjct: 61  NGGMCLGMAADAIRIGEVFRHVEGNLPMVECFADADNSCPLTDACRLRLALRDAAQAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + +++ LV + + + KI N
Sbjct: 121 SLDEITLDALVCDNTDLLKILN 142


>gi|192359950|ref|YP_001982031.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
 gi|190686115|gb|ACE83793.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
          Length = 160

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +RVL+Y A+  +  + I +IA++  IS+  L K++Q L   G ++ VRG+
Sbjct: 16  MRITRYTDYSLRVLIYVALKGEAISTIREIADSYGISKNHLMKVVQELNNKGYLQAVRGK 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  +V+ TEE F + ECF+  +  C L  +C L  VL KAL AFF 
Sbjct: 76  HGGLRLNGRPEDINIGRLVRHTEEDFALVECFSGGE--CSLTPACRLKGVLVKALEAFFQ 133

Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142
           VL  Y++  L  + +R  + ++ +
Sbjct: 134 VLDGYTLADLLPLSSRRELVRLLS 157


>gi|327440415|dbj|BAK16780.1| predicted transcriptional regulator [Solibacillus silvestris
           StLB046]
          Length = 153

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDY +R LMY  +   +    I +IA+A  IS+  L K+   L K G +ET+RGR
Sbjct: 6   RLTVYTDYSLRTLMYLGVRGRENLVTIQEIADAYQISKNHLMKVTHDLGKIGYIETIRGR 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    +QI I +VV+ TE+ F + ECF      C +   C L   L++AL A+  
Sbjct: 66  GGGIRLAVEPEQINIGEVVRKTEDDFHLVECFNPEGNLCKISPECRLKFALQEALKAYLA 125

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  ++ ++  + ++F 
Sbjct: 126 VLDTYTLADVLVSKDILSELFG 147


>gi|283852245|ref|ZP_06369517.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572327|gb|EFC20315.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 146

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+++   P RI  IA    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALNDQAGPVRIKDIAARQGVSVKYLEKLVRELKQAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L RP ++I++  +V+A E  F + EC       CP    C    V  +A  A  
Sbjct: 61  PRGGHELARPLEEISVGAIVRALEGEFTLVECDGEAGTPCPRQADCLTREVWAEASRAMH 120

Query: 120 DVLTQYSIECLV 131
           + L   ++  LV
Sbjct: 121 EKLDAITLADLV 132


>gi|51893529|ref|YP_076220.1| putative transcriptional regulator [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857218|dbj|BAD41376.1| putative transcriptional regulator [Symbiobacterium thermophilum
           IAM 14863]
          Length = 146

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ L   A+H    P  +  IAE   +SE +L ++  PL +AGI+  VRG
Sbjct: 1   MKLSTKGKYGVKALFELAMHEGSGPVSLRTIAERQGLSEHYLEQLAAPLRRAGIITAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA+QIT+ D+++  E      +C    + D     +C +  V  +      
Sbjct: 61  AQGGYMLARPANQITVGDIIRVLEGPIGYTDCATEGEPDPECASTCPVHGVWERVTQQII 120

Query: 120 DVLTQYSIECLVRN 133
            V+   +++ LV  
Sbjct: 121 AVIDSITLQDLVDQ 134


>gi|229541297|ref|ZP_04430357.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229325717|gb|EEN91392.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 144

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY +R L+Y A +       I +IA+A  IS+  L KI   L + G+V+TVRG
Sbjct: 1   MRLTHYSDYALRELIYLASLEEGKLASIKEIADAYNISKNHLMKITYELSQLGLVKTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L +   +I +  +++ TE+ F + EC       C +   CGL  VL +AL A+ 
Sbjct: 61  RGGGICLNKHPREINVGKLIRITEDDFKLVECMEDGASACIISPVCGLKHVLNEALVAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++E LV++  S +++ 
Sbjct: 121 RVLDKYTLEDLVKDPLSYRQLL 142


>gi|302879674|ref|YP_003848238.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302582463|gb|ADL56474.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 161

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/141 (40%), Positives = 87/141 (61%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +D G+R+LMY A+       I + ++   IS+  L KI   L K G++ ++RGR
Sbjct: 1   MKLTQYSDLGLRLLMYLALREGESVTIQEASDRFAISKNHLVKISHQLTKQGLIVSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP ++I + +V++ATEE+F + ECF + +  C + G C L++VL  AL AFF 
Sbjct: 61  NGGVRLARPPERINVEEVLRATEENFDLVECFNAAQNRCVISGECKLSAVLDAALAAFFK 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL+  S+  LV N  +I +  
Sbjct: 121 VLSATSLADLVTNSQAIDQNL 141


>gi|329888279|ref|ZP_08266877.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846835|gb|EGF96397.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 141

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y     D    I++IA+A  IS+  L K++  LV AG + +VRGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGARQDRLCSIAEIAQAYGISQNHLMKVVSDLVNAGYLVSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP DQI +  VV+ TE+ F + +C       C +  +CGLT  L +AL AF  
Sbjct: 61  FGGVRLARPPDQINVGAVVRHTEDGFDLVDC-----GSCIIAPACGLTGALHQALAAFMK 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++E L+  R  +  +F 
Sbjct: 116 VLDGYTLEGLLSRRVDMAGLFE 137


>gi|78045031|ref|YP_361013.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997146|gb|ABB16045.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 148

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ +   A+H  + P  IS+IA    ISE +L ++   L KAG++++VRG
Sbjct: 1   MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLRKAGLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R  ++IT+ +VV+  E      EC + + K  C    +C    V  K  +A 
Sbjct: 61  AQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEACDQADACISRVVWAKVRDAL 120

Query: 119 FDVLTQYSIECLVRNRSS 136
             VL   +++ ++     
Sbjct: 121 NKVLDSITLKDMIEEAKK 138


>gi|126739737|ref|ZP_01755428.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
 gi|126718969|gb|EBA15680.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
          Length = 149

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 78/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LM+CA ++D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMFCAANSDRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R   +I + D+ +  E +  + ECFA     CPL  +C L   L  A  AF+ 
Sbjct: 61  NGGMSLGRDPQEILMGDIFRHVEGNLPMVECFADADNSCPLTDACRLRVALSDAAQAFYS 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   +++ LV +   + ++  
Sbjct: 121 SLDDITLDSLVCDNHDLMRLLQ 142


>gi|331091033|ref|ZP_08339875.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405255|gb|EGG84791.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 152

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +++  P  I+ I+    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQYSEVEPVSINSISARQGISERYLEQLMALLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +  + I++ DV++A E      EC   S +  C   G C    V ++   + 
Sbjct: 61  AGGGYVLAKEKEDISVGDVLRALEGKLEPVECSGFSAEESCEAAGGCVTKYVWQRINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            + + +  ++ LVR   ++  I
Sbjct: 121 NNTVDEIKLDQLVRESKAMNSI 142


>gi|146310026|ref|YP_001175100.1| transcriptional repressor NsrR [Enterobacter sp. 638]
 gi|189030886|sp|A4W5R9|NSRR_ENT38 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|145316902|gb|ABP59049.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       ISQ+ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPAQSIRVGDVVRELE-PLSLVNCSSDF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|170766851|ref|ZP_02901304.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
 gi|170124289|gb|EDS93220.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
          Length = 162

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG+
Sbjct: 23  QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYDVSRNHMVKIINQLSRAGYVTAVRGK 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F  
Sbjct: 83  NGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 138

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159


>gi|162146319|ref|YP_001600778.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543678|ref|YP_002275907.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784894|emb|CAP54437.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531355|gb|ACI51292.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 146

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y     D    I +IA+A  ISE  L KI+  L + G +ETVRGR
Sbjct: 1   MRLTLHTDYALRTLIYLGTRTDRLVSIHEIAQAYGISENHLMKIIHRLGRGGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114
            GG+RL R AD I I DVV+ TEE   +  C             C L  +C L  VL +A
Sbjct: 61  GGGLRLARAADAIRIGDVVRYTEEDMALVGCMQGDDPSAPDARPCVLADACRLKGVLGEA 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L AF  VL +Y++  ++  R+
Sbjct: 121 LGAFTAVLDRYTLADMITERT 141


>gi|251788403|ref|YP_003003124.1| transcriptional repressor NsrR [Dickeya zeae Ech1591]
 gi|247537024|gb|ACT05645.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCSKEF---CHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 TELDNYTLADMVEENPPLYKLL 138


>gi|311281270|ref|YP_003943501.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
 gi|308750465|gb|ADO50217.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRVGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L   L  A+ +F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSNAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138


>gi|320173668|gb|EFW48858.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella
           dysenteriae CDC 74-1112]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVSCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|333010327|gb|EGK29760.1| rrf2 family protein family protein [Shigella flexneri VA-6]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|300854396|ref|YP_003779380.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434511|gb|ADK14278.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 148

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH +D P+ I  I+E   ISE +L ++   L K+ +V+++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYSDEPSSIKSISERQNISEYYLEQLFSNLRKSNLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R    IT+ D++K  E    +++C   +  + C  +  C    +  +   + 
Sbjct: 61  AQGGYILNREPKDITVADIMKVLEGPIEISDCVDENNENSCSNMDCCATRLLWSRIKESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V+   +++ +V +   +K+
Sbjct: 121 EQVMKSTTLQDMVDDYIQMKQ 141


>gi|332978237|gb|EGK14968.1| transcriptional repressor NsrR [Psychrobacter sp. 1501(2011)]
          Length = 171

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  +DY +R LMY A+  D      I+ IA +  IS   L K++  L + G +E++R
Sbjct: 1   MRLTNYSDYALRTLMYLAVIPDRDTLATITDIANSYQISRSHLTKVIHQLAQIGYIESIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------------------SHKID 98
           G+ GG+RL +PA  I + +V++ TE  F V  CFA                     +   
Sbjct: 61  GKNGGIRLAKPAADIILGEVIRQTEPDFHVVPCFALLPSRTKPKENQVESLNTPMKYSES 120

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           C +   C L SV  +A  AF  V+  Y++  +V N   + +I 
Sbjct: 121 CAITPVCKLKSVFAEATQAFLKVMDDYTLADIVNNEEELWQIL 163


>gi|331085024|ref|ZP_08334111.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408724|gb|EGG88189.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 152

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +++  P  IS IA    ISE +L +++  L KAG+++++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R  + I++ DV++A E +    EC   H  + C   G C    V +K   + 
Sbjct: 61  AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              + +  ++ LV    ++K
Sbjct: 121 NQTVDEIKLDRLVEESKAMK 140


>gi|254037192|ref|ZP_04871269.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 1_1_43]
 gi|226840298|gb|EEH72300.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
           sp. 1_1_43]
          Length = 161

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG+
Sbjct: 22  QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + A  I I DVV+  E    +  C +     C +  +C L   L KA+ +F  
Sbjct: 82  NGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158


>gi|260588146|ref|ZP_05854059.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
           hansenii DSM 20583]
 gi|331082288|ref|ZP_08331414.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541673|gb|EEX22242.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
           hansenii DSM 20583]
 gi|330400774|gb|EGG80375.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 150

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A+++D     I  I+    IS+ +L ++++ L KAG+V + RG
Sbjct: 1   MKLSTKGRYGLRALIDLALYSDEEAVSIQSISNRQNISDSYLEQLMRKLKKAGLVVSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +PAD+I++ DV++A E S     C A +   C     C    V ++   +  
Sbjct: 61  AQGGYRLAKPADEISVGDVLRALEGSLEAVSCGAGNNEHCQGEDLCVTRYVWQEINKSIQ 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + +    I  LV      ++
Sbjct: 121 ETVDSIKISQLVEESRKARE 140


>gi|333011161|gb|EGK30575.1| rrf2 family protein family protein [Shigella flexneri K-272]
 gi|333012645|gb|EGK32025.1| rrf2 family protein family protein [Shigella flexneri K-227]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A+        IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMALLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|242238239|ref|YP_002986420.1| transcriptional repressor NsrR [Dickeya dadantii Ech703]
 gi|242130296|gb|ACS84598.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech703]
          Length = 141

 Score =  170 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     I+++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPDGKMTSITEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    +  C   +   C +  +C L  VLR+A+  F 
Sbjct: 61  KNGGIRLGRDPATIRIGDVVRELE-PLALVNC---NHEFCHITSACRLKQVLRQAVEQFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V+    + ++ 
Sbjct: 117 QELDNYTLADMVKENPPLYQLL 138


>gi|114319388|ref|YP_741071.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225782|gb|ABI55581.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 162

 Score =  170 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY  RVL+Y          I  IA+   IS   L K++  L   G +ETVRG+
Sbjct: 1   MRLTVYSDYAFRVLVYLGTRPGERATIRGIADCYGISRNHLTKVVHQLGSQGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL R  + I + +V++ TEE F + EC   S +  C + G C L  VL +A  AF 
Sbjct: 61  GGGLRLTRDPEGIGVGEVLRDTEEGFGLVECMRPSGRGMCRIEGGCRLRGVLGEATRAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  L+ NR  + ++   
Sbjct: 121 AVLDRYTLADLLENRDELAQLLAG 144


>gi|149376004|ref|ZP_01893770.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
 gi|149359641|gb|EDM48099.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
          Length = 145

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A+  D    I QIA++  IS   L K++  L K G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLVYLAVQGDELATIQQIADSYEISRNHLMKVVHQLNKKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL    + I +  +V+ TE+   V ECF+S    C +   CGL S+  +AL AF +
Sbjct: 61  KGGMRLHMAPEDINVGILVRETEQDLSVVECFSSGDA-CRITPVCGLKSMFGEALAAFLE 119

Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142
           VL +Y++  ++ +  R  + ++  
Sbjct: 120 VLDRYTLADIIHDQHRPQLLRLLQ 143


>gi|303241873|ref|ZP_07328367.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302590547|gb|EFL60301.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 149

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  + P  +  IAE   ISE +L ++   L KAG V++VRG
Sbjct: 1   MKLSTKGRYGVKSMLDLALHNGEGPVALKSIAERQDISENYLEQLFATLRKAGHVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L    + ITI  +++A E S    EC      I C     C    +  K  +  
Sbjct: 61  SQGGYILANSPENITIGAILRALEGSLAPVECVVEDDPIKCTKSDQCVTRIIWEKIRDKV 120

Query: 119 FDVLTQYSIECLV----RNRSSIKKIFN 142
            +V+   ++  L+    +N  S   IFN
Sbjct: 121 NEVVDSITLYDLIEEYTKNNESKGYIFN 148


>gi|229917143|ref|YP_002885789.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
           AT1b]
 gi|229468572|gb|ACQ70344.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
           AT1b]
          Length = 146

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY +R LMY A  +     I ++A+   IS+  + K++  L K G +E+VRGR
Sbjct: 1   MRLTQTCDYALRTLMYSATFSHRLVTIQEVADQYNISKNHVMKVVYELGKHGYLESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RP D I + +VV+  E  F + ECF   +  C +  +C L  VL +A+ AF  
Sbjct: 61  GGGFRLARPMDDINVGEVVRTME-PFELVECFGEGR--CVIAPACDLRGVLNEAMLAFLH 117

Query: 121 VLTQYSIECLVRNRS-SIKKIFN 142
           VL +Y+I  LV NR+  +  +  
Sbjct: 118 VLDRYTIADLVVNRTNELAMLLG 140


>gi|188026362|ref|ZP_02961812.2| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
 gi|188020109|gb|EDU58149.1| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
          Length = 165

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G V+  RG+
Sbjct: 27  QLTSFTDYGLRALIYLASLPEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 86

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA+ I + DVV+A E    +  C       C +  +C L  VL +A+  F  
Sbjct: 87  NGGITLGQPAETIRVGDVVRALE-PLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLK 142

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L ++++  +V++ S + ++ 
Sbjct: 143 ELDKHTLADMVKDNSPLYQLL 163


>gi|317500549|ref|ZP_07958771.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089351|ref|ZP_08338251.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898059|gb|EFV20108.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405414|gb|EGG84949.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 142

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +  + P  I+ I+    ISE +L +++  L KAGIV +VRG
Sbjct: 1   MKLSTKGRYGLRALIDLAQNGGEQPVSITSISTRQDISERYLEQLMSMLKKAGIVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +  + I++ DV++A E S    +C        C +  SC    V +K  ++ 
Sbjct: 61  AGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCVTKYVWKKINDSI 120

Query: 119 FDVLTQYSIECLVRNR 134
              + +  ++ LV+  
Sbjct: 121 NQTVDEIKLDQLVKEN 136


>gi|90019750|ref|YP_525577.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89949350|gb|ABD79365.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
           degradans 2-40]
          Length = 146

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 89/143 (62%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVLMY  + +     I +IA++  IS+  L K++Q L   G ++ +RG+
Sbjct: 1   MHITRFTDYSLRVLMYAGLRDGELCTIQEIADSYNISKNHLMKVVQELNIKGYLKAIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA++I +  +V+ TE+ F + ECF+     C +  +C L S+L +ALNAF  
Sbjct: 61  NGGLTLGRPANEINLGSLVRDTEQDFNIVECFSEADT-CTITPNCKLKSILAQALNAFLG 119

Query: 121 VLTQYSIECLV--RNRSSIKKIF 141
           VL  Y++E L+  R ++ + K+ 
Sbjct: 120 VLDDYTLEDLLAPRTKAPLMKLL 142


>gi|167644820|ref|YP_001682483.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167347250|gb|ABZ69985.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 151

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++ A  +D    I +IA    IS+  L K++Q L KAG V TVRGR
Sbjct: 1   MRLTRYTDYAMRVLLHLAARDDGLASIGEIAALYDISQNHLMKVVQDLGKAGFVRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPADQI +  VV+ TEE F + +C       C +  +C L  VL +A  AF  
Sbjct: 61  GGGVALARPADQIVVGQVVRQTEEGFQLVDC-----SQCLIAPACTLPRVLNEATAAFIG 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++E L+  R  ++ +F 
Sbjct: 116 VLEKYTLEDLLDRRHQMRALFG 137


>gi|149923899|ref|ZP_01912287.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
 gi|149815242|gb|EDM74789.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
          Length = 145

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 75/132 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TDY +RVL+Y A  +       +I+EA  IS   L K++  L +AG +   RGR
Sbjct: 1   MRLTKHTDYALRVLIYVAAADGRQVSTDEISEAYGISGHHLVKVVGTLGRAGFLAVKRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L R  +++ + +V++ATE  F + EC      +CPL G+C L S L +A  AF  
Sbjct: 61  GGGVTLARDPEELRLGEVLEATEPDFAMVECMQEGNTECPLTGACSLVSPLYEAQRAFIA 120

Query: 121 VLTQYSIECLVR 132
            L QY++  ++ 
Sbjct: 121 SLDQYTLADVLN 132


>gi|50122544|ref|YP_051711.1| transcriptional repressor NsrR [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644039|sp|Q6D125|NSRR_ERWCT RecName: Full=HTH-type transcriptional repressor nsrR
 gi|49613070|emb|CAG76521.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 141

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGKPAETIRIGDVVRELE-PLTLVNCSHEF---CHITAACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  +V+    + K+ 
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138


>gi|307132423|ref|YP_003884439.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
 gi|306529952|gb|ADM99882.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
          Length = 141

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    +  C       C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCSKEF---CHITSACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 KELDNYTLADMVEENPPLYKLL 138


>gi|302386870|ref|YP_003822692.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197498|gb|ADL05069.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 146

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 66/137 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +  Y +R+++  A+H     +I+Q+AE   IS+ +L +I+  L +AG V++ RG 
Sbjct: 1   MKFSTKGRYALRMMLEFALHPGECTKINQVAERQEISDKYLEQIVTILSRAGYVKSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +   + T+  +++  E S     C       C    +C    V ++  +A   
Sbjct: 61  QGGYYLTKDPSEYTVGMILRLAEGSLVPVTCLEDEVNPCSRSQNCATLMVWKELDHAISH 120

Query: 121 VLTQYSIECLVRNRSSI 137
           V+   ++  LV  +  +
Sbjct: 121 VVDGITLADLVEEQKRL 137


>gi|124515741|gb|EAY57250.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
 gi|206602245|gb|EDZ38727.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 169

 Score =  170 bits (432), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 77/141 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY IRVL+Y +   D P  IS++AE+  IS   L K++  L ++G + T RG+
Sbjct: 1   MQLTLYSDYSIRVLLYLSAKTDGPATISEVAESYGISRNHLVKVVHNLSQSGYIRTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+ L R   +I+I  +++ TE  F + EC       CP+   C L +V R AL AF  
Sbjct: 61  KGGMVLGRDPKEISIGGLLRQTEPDFRLVECLQEESSGCPIDQVCSLKAVFRTALYAFLK 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  +  N   +K I 
Sbjct: 121 TLDGYTLADITGNVGLLKPIL 141


>gi|271501898|ref|YP_003334924.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
           Ech586]
 gi|270345453|gb|ACZ78218.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech586]
          Length = 141

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R    I I DVV+  E    +  C    K  C +  +C L  VL++A+  F 
Sbjct: 61  KNGGIRLGRDPSTIRIGDVVRELE-PLSLVNCS---KAFCHITPACRLKQVLQQAVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V     + K+ 
Sbjct: 117 KELDNYTLADMVEQNPHLYKLL 138


>gi|225174416|ref|ZP_03728415.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225170201|gb|EEG78996.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 140

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R +   A+     P  + +IA+   IS  FL +I  PL +AG++++VRG
Sbjct: 1   MKVSAKGEYGVRAMAILALEFRAGPIPLREIAKREGISYQFLEQIFLPLRRAGLIDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L RP D+I + D+++A E      EC      D C    +C    +  K  +  
Sbjct: 61  AKGGYVLARPPDEIKVGDILRALEGPIAPVECVGEGNTDACGRSAACLTRGIWEKLRDTM 120

Query: 119 FDVLTQYSIECLVR 132
            +VL   ++  +++
Sbjct: 121 SEVLNDITLADVIK 134


>gi|168751471|ref|ZP_02776493.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754748|ref|ZP_02779755.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168766456|ref|ZP_02791463.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774110|ref|ZP_02799117.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780609|ref|ZP_02805616.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4076]
 gi|195935968|ref|ZP_03081350.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808424|ref|ZP_03250761.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812580|ref|ZP_03253909.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819958|ref|ZP_03260278.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397401|ref|YP_002273720.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4115]
 gi|254796197|ref|YP_003081034.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           TW14359]
 gi|226736214|sp|B5Z2I4|NSRR_ECO5E RecName: Full=HTH-type transcriptional repressor nsrR
 gi|187770187|gb|EDU34031.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014508|gb|EDU52630.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001762|gb|EDU70748.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357816|gb|EDU76235.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363933|gb|EDU82352.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4486]
 gi|208728225|gb|EDZ77826.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733857|gb|EDZ82544.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740081|gb|EDZ87763.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158801|gb|ACI36234.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750226|gb|ACI73420.1| hypothetical protein ECs5154 [Escherichia coli]
 gi|254595597|gb|ACT74958.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
           str. TW14359]
          Length = 141

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A   +     IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGLMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|20807692|ref|NP_622863.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516241|gb|AAM24467.1| predicted transcriptional regulator [Thermoanaerobacter
           tengcongensis MB4]
          Length = 149

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YGI+ +   A++  + P  +  IAE   +SE +L +++  L KA +V++VRG
Sbjct: 1   MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLMAILRKADLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   A+C       +C   G C    V+ +  ++ 
Sbjct: 61  AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVVEDTPFECSRAGGCPTKLVMERIRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V+   +++ +V +   + +
Sbjct: 121 NKVIDSITLQDMVEDYRRLNQ 141


>gi|160878171|ref|YP_001557139.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426837|gb|ABX40400.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           phytofermentans ISDg]
          Length = 145

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI+N      I  IA    IS+ +L +I+  L +AG V++ RG
Sbjct: 1   MKISTKGRYALRLMLDLAINNTGEFITIKSIAGRQEISDKYLEQIITLLSRAGYVKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +   + T+  ++K  E S     C      DC   GSC    V +K   A  
Sbjct: 61  AQGGYRLTKEPKEYTVGMILKLIEGSLAPVSCVEEEDNDCNRYGSCATLFVYQKINEAVN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +V+   ++E LV     +
Sbjct: 121 NVVDNITLEDLVERHREL 138


>gi|319405537|emb|CBI79156.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 151

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 73/130 (56%), Positives = 101/130 (77%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA A  +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1   MRLTKQTNYALRMLMYCASNQGALSRIPEIARAYAVSELFLFKILQPLVEAGFMKTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L +PA +I++ DV+K TE++F++AECF +   +CPL+  CGL  VL+KAL++FFD
Sbjct: 61  NGGVKLAKPATEISVADVIKITEDNFYMAECFDNKLSNCPLINFCGLNIVLKKALDSFFD 120

Query: 121 VLTQYSIECL 130
           VL+  SI  L
Sbjct: 121 VLSLTSIADL 130


>gi|21957349|gb|AAM84224.1|AE013666_4 hypothetical protein y0636 [Yersinia pestis KIM 10]
 gi|45435245|gb|AAS60805.1| Predicted transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 158

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG+
Sbjct: 19  QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 78

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F  
Sbjct: 79  NGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 134

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  +V++ S + K+ 
Sbjct: 135 ELDNYTLADMVKDNSPLYKLL 155


>gi|210615813|ref|ZP_03290794.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
 gi|210150149|gb|EEA81158.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
          Length = 151

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A +++  P  IS I+    ISE +L +++  L +AG+++++RG
Sbjct: 1   MKISTKGRYGLRALIDIAQYSEIEPVPISSISARQDISERYLEQLMALLKRAGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L +   +I++ DV++A E +    EC A H+ + C   G C    V +K   + 
Sbjct: 61  AGGGYVLAKDVSEISVGDVLRALEGNLEPVECAAFHEEESCEAAGGCVTKYVWKKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
              + +  ++ LV     I++   
Sbjct: 121 NRTVDEIDLKQLVEESKQIQQNLT 144


>gi|108758209|ref|YP_635032.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
 gi|108462089|gb|ABF87274.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
          Length = 148

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT   DY +RVL+Y A     P    ++A+A  IS+  L +++Q L   G+V+   GR
Sbjct: 1   MHLTLHADYSLRVLLYLATRTGRPVSTQEMADAYGISKHHLVRVVQTLAGQGVVDARAGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L R    I +  V++A E  F + ECF   +  CP+  +CGL  VL +A  AF  
Sbjct: 61  SGGVVLARAPADIQVGSVLRAAEPDFHLVECFDRERNACPIAPACGLKGVLDEAREAFLA 120

Query: 121 VLTQYSIECLVRN-RSSIKKIF 141
           VL +Y++  L+R  R +++  F
Sbjct: 121 VLDRYTLADLLRRSRPNLQDYF 142


>gi|163749814|ref|ZP_02157059.1| Rrf2 family protein [Shewanella benthica KT99]
 gi|161330328|gb|EDQ01307.1| Rrf2 family protein [Shewanella benthica KT99]
          Length = 152

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYGIR LMY AI  +     RIS+I +   +S   + KI+  L K G ++T+R
Sbjct: 1   MQLTRYTDYGIRTLMYLAIQPERETLFRISEITQVFDLSPNHVSKIVHHLGKLGYLKTIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +   +I I  +V+  E S    +C    K  C L  SC L  VL +A+ A+
Sbjct: 61  GKSGGFRLGKSPKEINIGQLVRVLENSLTPIDCS---KPYCRLTPSCQLWGVLAEAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QYS+  +V N   + K+ 
Sbjct: 118 LTVLDQYSLADIVSNNHELVKLL 140


>gi|323699033|ref|ZP_08110945.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           ND132]
 gi|323458965|gb|EGB14830.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans ND132]
          Length = 150

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A H  D P RI  IA+   +S  +L K+++ L   G V++ RG
Sbjct: 1   MKLTTRSRYGTRMMLDIAQHGKDGPVRIQDIADRQGVSAKYLEKLIRKLKDVGFVKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L +PA +I I +VV A E    + EC +  K  C  +  C    + ++A +A +
Sbjct: 61  PRGGHSLAKPAAEIPIGEVVHALEGDGSLVECRSGDKG-CSRMKECLTRRLWQEAADAMY 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L  +++  L+ +    +
Sbjct: 120 ERLNTFTLADLINDAEQCR 138


>gi|157964032|ref|YP_001504066.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
           ATCC 700345]
 gi|157849032|gb|ABV89531.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
           ATCC 700345]
          Length = 149

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYG+R LMY A+H++  +  RI++I E   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDYGLRTLMYLALHSERESLFRIAEITEVFDLSANHISKVVHHLGKLGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PA +I I  VV+A E S    +C    K  C    +C L   L  A+NA+
Sbjct: 61  GKSGGFKLAKPASEINIGQVVRALENSLAPIDCS---KPYCLFTPACKLRGALADAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y+++ +V N+  +K + 
Sbjct: 118 LAVLDGYTLDMIVTNKQELKSLL 140


>gi|30248932|ref|NP_841002.1| hypothetical protein NE0928 [Nitrosomonas europaea ATCC 19718]
 gi|30138549|emb|CAD84839.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
           19718]
          Length = 151

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L Y  +  +  + I++IA+   IS   + KI+  L + G V+T+RG+
Sbjct: 1   MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQLGYVDTLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I +V++ TE S  + ECF S++  C +  SC L + + +AL+AF  
Sbjct: 61  NGGIRLAHAPEKINIGEVIRHTETSMDIVECF-SNQNSCIIGCSCVLRTAISEALSAFMA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  L+  R  + +  +
Sbjct: 120 VLDDYTLADLIAPRRQLSRKLH 141


>gi|293393207|ref|ZP_06637522.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
 gi|291424353|gb|EFE97567.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
          Length = 141

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    IS++ E   +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPKDKMTSISEVTEVYGVSRNHMVKIINQLSRIGLVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    +  C       C +  +C L  VL++ +  F 
Sbjct: 61  KNGGIRLGQPAASIRIGDVVRALE-PLSLVNCSGDF---CHITPACRLKQVLQQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  +V + + + K+ 
Sbjct: 117 AELDNYTLADMVEDNAPLYKLL 138


>gi|117918506|ref|YP_867698.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117610838|gb|ABK46292.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
          Length = 151

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRKTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C    K  C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QYS++ +V NR+ +  + 
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140


>gi|172057713|ref|YP_001814173.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990234|gb|ACB61156.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 148

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDYG+RVL+Y  +H D    +  IA    IS   L K+ Q L K G VE+ RGR
Sbjct: 1   MRITQYTDYGLRVLIYLGLHRDEVTPMPAIANHYGISSNHLMKVTQQLTKLGYVESTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  ++I I  VV+  E    + ECFA+    C +   C L  +L +AL AF  
Sbjct: 61  TGGLRLIRDPEEINIGKVVREME-PMDIVECFAADG-HCVIEPQCQLKGILARALRAFIR 118

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L Q+++  L++N   +  +F
Sbjct: 119 ELEQHTLAELLKNPYELNLLF 139


>gi|218551448|ref|YP_002385240.1| transcriptional repressor NsrR [Escherichia fergusonii ATCC 35469]
 gi|226737671|sp|B7LLW0|NSRR_ESCF3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|218358990|emb|CAQ91650.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
           35469]
 gi|324112225|gb|EGC06203.1| transcriptional regulator [Escherichia fergusonii B253]
 gi|325499713|gb|EGC97572.1| transcriptional repressor NsrR [Escherichia fergusonii ECD227]
          Length = 141

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKPASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|114777146|ref|ZP_01452166.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
 gi|114552667|gb|EAU55127.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
          Length = 153

 Score =  169 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 77/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y  ++ +    I++I++A  I+   L K++  L + G + T RG+
Sbjct: 1   MQLTQYTDYSLRVLIYLGLYPERRCTITEISDAYDINRNHLVKVVHSLSQDGWITTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     QI I  V++ TE    + ECF +    CP+  +C L   L +A  AF +
Sbjct: 61  SGGMVLSFNPKQINIGAVIQGTEPHMNLLECFDNKYNTCPITSACVLKHALYQARKAFMN 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL+ Y++E ++     +  +  
Sbjct: 121 VLSNYTLEDVLVQPEILISLLG 142


>gi|152973049|ref|YP_001338195.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206580843|ref|YP_002240865.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
 gi|238892663|ref|YP_002917397.1| transcriptional repressor NsrR [Klebsiella pneumoniae NTUH-K2044]
 gi|288937522|ref|YP_003441581.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Klebsiella variicola At-22]
 gi|290512260|ref|ZP_06551627.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
 gi|189030887|sp|A6TH94|NSRR_KLEP7 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737672|sp|B5Y324|NSRR_KLEP3 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|150957898|gb|ABR79928.1| conserved protein, Winged helix domain [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206569901|gb|ACI11677.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
 gi|238544979|dbj|BAH61330.1| putative HTH-type transcriptional repressor [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|288892231|gb|ADC60549.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
           At-22]
 gi|289775255|gb|EFD83256.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
          Length = 141

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA QI + DVV+  E    +  C +     C +  +C L   L +A  +F 
Sbjct: 61  KNGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138


>gi|284049281|ref|YP_003399620.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
 gi|283953502|gb|ADB48305.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
          Length = 140

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI+  +    I  +++   ISE +L +I+  L +A +V++ RG
Sbjct: 1   MKISTKGRYALRLMIDLAINGTESYVPIKSVSQRQEISEKYLEQIITQLSRAKLVKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R     T  ++++A E S     C       C     C    + ++  +A  
Sbjct: 61  AQGGYKLVRDPKDYTAGEILRAVEGSLAPVACLEPGHAICDRAAHCVTLDLWKEIQDAID 120

Query: 120 DVLTQYSIECLVRNRSS 136
           +++   ++E LV+ +  
Sbjct: 121 NIVDNTTLEDLVKKQEK 137


>gi|283786857|ref|YP_003366722.1| transcriptional repressor [Citrobacter rodentium ICC168]
 gi|282950311|emb|CBG89958.1| transcriptional repressor [Citrobacter rodentium ICC168]
          Length = 141

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG +  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFITAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKAANTIRIGDVVRELE-PLSLVNCNSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEQNQPLYKLL 138


>gi|114045552|ref|YP_736102.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
 gi|113886994|gb|ABI41045.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
          Length = 151

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C    K  C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVQAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QYS++ +V NR+ +  + 
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140


>gi|289208246|ref|YP_003460312.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288943877|gb|ADC71576.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 143

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD+ +RVLMY  +  D     ++ I+E   I    L KI+  L + G + T RG
Sbjct: 1   MQLTRFTDFSLRVLMYLTVQPDDQRVTVTDISERFGIPRNHLVKIVHQLGQKGYLITRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L R  + I I  VV+  E +  V +C       CP++  C L  VL  A +AF 
Sbjct: 61  KGGGISLARAPESINIGAVVRDMEPNLKVVDC---ESPMCPILPGCQLRGVLDDARDAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY++  + ++   ++ + 
Sbjct: 118 AVLDQYTVRDVTQSPEHLRSLL 139


>gi|197303190|ref|ZP_03168232.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
           29176]
 gi|197297730|gb|EDY32288.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
           29176]
          Length = 151

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A +++  P  I+ I++   ISE +L +++  L KAGIV+++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQYSEETPVSITSISKRQDISERYLEQLMSMLKKAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R A +I++ +V++A E S    EC     +  C    SC    V ++  ++ 
Sbjct: 61  ANGGYILARDAKEISVGEVLRALEGSLEPVECAGLDPRGGCQASESCVTKYVWKRINDSI 120

Query: 119 FDVLTQYSIECLVRN 133
              +    +  LV  
Sbjct: 121 NRTVDDIWLSQLVEE 135


>gi|113968387|ref|YP_732180.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883071|gb|ABI37123.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
          Length = 151

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +++A E S    +C    K  C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLIRALENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QYS++ +V NR+ +  + 
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140


>gi|147676569|ref|YP_001210784.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146272666|dbj|BAF58415.1| predicted transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 151

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + R  YG+R ++  A +  ++ P  + Q+AE   ISE +L +++  L K G+V +VR
Sbjct: 1   MKFSTRARYGLRAMVDLAQNYASNEPIPLFQVAERQGISEGYLEQLMTYLRKGGLVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT  ++++  E      +C +    + C    +C    +  +   +
Sbjct: 61  GAQGGYLLAREPSRITAGEIIRCLEGPLSPTDCVSEDDPEFCDRADACVTRLLWERVRES 120

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
              VL   S+E L +N   I+
Sbjct: 121 VASVLDNTSLEDLCKNADKIR 141


>gi|119384427|ref|YP_915483.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119374194|gb|ABL69787.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 147

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y     +    I +IA+A  IS+  L K++  LV AG + ++RGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGREPERLCPIGEIAQAYGISQNHLMKVINDLVNAGFLASLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I I  +V+ TE+ F +  C      +C +  +CGLTSVL +A+  F  
Sbjct: 61  NGGIRLARPPAEINIGALVRHTEDDFDLVGC-----GNCIIAPACGLTSVLDEAMAGFMA 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  YS+  ++  R     + N
Sbjct: 116 VLDGYSLADVLARRPDFSYLLN 137


>gi|145600842|ref|YP_001164918.1| transcriptional repressor NsrR [Yersinia pestis Pestoides F]
 gi|162419331|ref|YP_001605273.1| transcriptional repressor NsrR [Yersinia pestis Angola]
 gi|165926673|ref|ZP_02222505.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936529|ref|ZP_02225097.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011855|ref|ZP_02232753.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214016|ref|ZP_02240051.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400661|ref|ZP_02306170.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418774|ref|ZP_02310527.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423241|ref|ZP_02314994.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170026007|ref|YP_001722512.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII]
 gi|186893791|ref|YP_001870903.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+]
 gi|294502487|ref|YP_003566549.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
 gi|108777100|gb|ABG19619.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Nepal516]
 gi|108781808|gb|ABG15866.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Antiqua]
 gi|145212538|gb|ABP41945.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Pestoides F]
 gi|162352146|gb|ABX86094.1| nitrite-sensitive repressor NsrR [Yersinia pestis Angola]
 gi|165915645|gb|EDR34254.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921296|gb|EDR38520.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989214|gb|EDR41515.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204811|gb|EDR49291.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962768|gb|EDR58789.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167050029|gb|EDR61437.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057411|gb|EDR67157.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752541|gb|ACA70059.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis YPIII]
 gi|186696817|gb|ACC87446.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis PB1/+]
 gi|262360517|gb|ACY57238.1| hypothetical protein YPD4_0329 [Yersinia pestis D106004]
 gi|262364465|gb|ACY61022.1| hypothetical protein YPD8_0332 [Yersinia pestis D182038]
 gi|294352946|gb|ADE63287.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
          Length = 154

 Score =  168 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A + +     ISQ+ E   +S   + KI+  L + G+V  VRG+
Sbjct: 15  QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 74

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PADQI I DVV+  E    +  C +     C +  +C L  VL +A+ +F  
Sbjct: 75  NGGIRLGKPADQILIGDVVRQME-PLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 130

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  +V++ S + K+ 
Sbjct: 131 ELDNYTLADMVKDNSPLYKLL 151


>gi|90418251|ref|ZP_01226163.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337923|gb|EAS51574.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 151

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RV++Y A   D  + ++ I+EA  IS   L K++  L KAG V T+RGR
Sbjct: 1   MRLTRYTDYALRVVIYLAARPDGLSSVADISEAYGISRNHLTKVVHELGKAGYVTTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA QI + ++V+ TE+ F +A+C       C +  +CG++ VL +A+ AF  
Sbjct: 61  SGGIRLARPASQIFVGELVRTTEDGFDLADC-----NRCIIQPACGMSGVLAEAVTAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +YS   L +    I  +F
Sbjct: 116 VLDRYSFADLPKREIDILSLF 136


>gi|326201925|ref|ZP_08191795.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987720|gb|EGD48546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
          Length = 148

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H ++    +  +AE   +SE +L ++   L K+G+V+++RG
Sbjct: 1   MKVSTKGRYGLRAIVDLAAHESEGQVSLKSVAERQKLSENYLEQLFSSLKKSGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L RPAD+IT+ D++++ E +    EC        C     C    V  K  +  
Sbjct: 61  AQGGYLLSRPADKITVGDILRSLEGTLCPVECIDPDLPGSCDRADECVTADVWAKIRDKI 120

Query: 119 FDVLTQYSIECLVRN 133
            +V+   ++  LV  
Sbjct: 121 NEVVDSITLADLVSE 135


>gi|150390216|ref|YP_001320265.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950078|gb|ABR48606.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
           metalliredigens QYMF]
          Length = 149

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   AIH  + P  +  IAE   IS+ +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFDLAIHQGEGPIPLKHIAERQKISDHYLEQLIASLRKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L    D++ + ++++  E     +EC        C     C    +  K   + 
Sbjct: 61  AQGGYMLANSPDKVVVGEIIRVLEGPLGPSECVLEEDPTACARADYCVTRVIWEKIRVSI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            DV+   +++ +V +   + 
Sbjct: 121 SDVIDNITLQDMVDDYHKLN 140


>gi|85714309|ref|ZP_01045297.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
 gi|85698756|gb|EAQ36625.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
          Length = 165

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 24  MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 83

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+S+   CP+  SC L + LR+ALNAF  
Sbjct: 84  SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 142

Query: 121 VLTQYSIECLVRNRSS 136
            L +Y++  L+ N   
Sbjct: 143 TLDRYTLADLILNPKD 158


>gi|77361335|ref|YP_340910.1| hypothetical protein PSHAa2419 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876246|emb|CAI87468.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 149

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M++++ TDY +RVL+Y AI+ +      I +IAE   +S+  L K++Q L   G + + R
Sbjct: 1   MNISRFTDYSLRVLIYLAINKNTNEIKTIKEIAECYGVSKNHLMKVVQQLSAQGYINSTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG++L   A+QI I  +V++ E    + ECF  +   C +  +C L  VL  A+ +F
Sbjct: 61  GKNGGIKLNHAAEQINIGQLVRSFEGKSALVECFGENNF-CIITPACQLKKVLSHAIESF 119

Query: 119 FDVLTQYSIECLVR--NRSSIKKIF 141
           F+ L QY++  L+   N++ + KI 
Sbjct: 120 FNCLDQYTLADLINGPNKAVLSKIL 144


>gi|125973237|ref|YP_001037147.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256003715|ref|ZP_05428703.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281417437|ref|ZP_06248457.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|125713462|gb|ABN51954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|255992276|gb|EEU02370.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281408839|gb|EFB39097.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|316940532|gb|ADU74566.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 143

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  + P  +  IAE   + E +L ++   L KAG + +VRG
Sbjct: 1   MWLSTKGRYGLKAMLDLALHNGEGPVALKSIAERQNLPENYLEQLFATLKKAGHITSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +  D ITI  ++++ E S    +C        C    +C    V  K  ++ 
Sbjct: 61  AQGGYLLSKDPDSITIGSILRSLEGSLAPVDCVVEDSSPKCDRFDNCVTKIVWEKIRDSV 120

Query: 119 FDVLTQYSIECLVRN 133
            + +   ++  LV+ 
Sbjct: 121 NEAVDSITLGDLVKE 135


>gi|218887677|ref|YP_002436998.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758631|gb|ACL09530.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 150

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A+H  D P  I  IA+   IS  +L K+++ L KAG + +  G
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHGTDAPVSIRDIAKRQGISVKYLEKLIRVLRKAGYIRSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA +I + DVV A EES     C       CP +  C   ++  +A  A +
Sbjct: 61  AHGGYQLTQPASEIPVGDVVFALEESLAPYTC-DEENPCCPRMAVCLTRTIWDEASRAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L  +++  L+R+ S
Sbjct: 120 KKLNSFTLADLMRDAS 135


>gi|148554707|ref|YP_001262289.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148499897|gb|ABQ68151.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 147

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++ AI++D    I +I+    +S   L K++  L + G +ETVRGR
Sbjct: 1   MRLTRYTDYSLRVLIHLAINDDRLCSIGEISRTYDVSHNHLMKVVNALSRDGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA++IT+ +VV+ TEE F +A+C       C L   CGLT VL +A+ A   
Sbjct: 61  TGGMRLARPANEITVGEVVRRTEEGFQLADCSG-----CALSPVCGLTGVLAEAMQAMMT 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           V   Y +  L+ +R +++++ N
Sbjct: 116 VFDSYKVSDLLTDREAMRRLMN 137


>gi|157155926|ref|YP_001465677.1| transcriptional repressor NsrR [Escherichia coli E24377A]
 gi|157163642|ref|YP_001460960.1| transcriptional repressor NsrR [Escherichia coli HS]
 gi|170021812|ref|YP_001726766.1| transcriptional repressor NsrR [Escherichia coli ATCC 8739]
 gi|194439542|ref|ZP_03071616.1| transcriptional repressor NsrR [Escherichia coli 101-1]
 gi|209921666|ref|YP_002295750.1| transcriptional repressor NsrR [Escherichia coli SE11]
 gi|218556730|ref|YP_002389644.1| transcriptional repressor NsrR [Escherichia coli IAI1]
 gi|253775197|ref|YP_003038028.1| transcriptional repressor NsrR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164107|ref|YP_003047215.1| transcriptional repressor NsrR [Escherichia coli B str. REL606]
 gi|297517580|ref|ZP_06935966.1| transcriptional repressor NsrR [Escherichia coli OP50]
 gi|307314874|ref|ZP_07594466.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|312965852|ref|ZP_07780078.1| rrf2 family protein [Escherichia coli 2362-75]
 gi|189030882|sp|A7ZV48|NSRR_ECO24 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030883|sp|A8A7S3|NSRR_ECOHS RecName: Full=HTH-type transcriptional repressor nsrR
 gi|189030885|sp|B1IT28|NSRR_ECOLC RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226736216|sp|B7M8T8|NSRR_ECO8A RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737669|sp|B6I282|NSRR_ECOSE RecName: Full=HTH-type transcriptional repressor nsrR
 gi|157069322|gb|ABV08577.1| transcriptional repressor NsrR [Escherichia coli HS]
 gi|157077956|gb|ABV17664.1| transcriptional repressor NsrR [Escherichia coli E24377A]
 gi|169756740|gb|ACA79439.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC
           8739]
 gi|194421541|gb|EDX37554.1| transcriptional repressor NsrR [Escherichia coli 101-1]
 gi|209914925|dbj|BAG79999.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218363499|emb|CAR01153.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
 gi|242379700|emb|CAQ34524.1| NsrR transcriptional repressor [Escherichia coli BL21(DE3)]
 gi|253326241|gb|ACT30843.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976008|gb|ACT41679.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253980164|gb|ACT45834.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|306905677|gb|EFN36206.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|309704683|emb|CBJ04033.1| transcriptional repressor [Escherichia coli ETEC H10407]
 gi|312289095|gb|EFR16989.1| rrf2 family protein [Escherichia coli 2362-75]
 gi|315063492|gb|ADT77819.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|323182284|gb|EFZ67694.1| rrf2 family protein family protein [Escherichia coli 1357]
 gi|323380429|gb|ADX52697.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11]
 gi|323946026|gb|EGB42063.1| transcriptional regulator [Escherichia coli H120]
 gi|323960327|gb|EGB55967.1| transcriptional regulator [Escherichia coli H489]
 gi|323970567|gb|EGB65826.1| transcriptional regulator [Escherichia coli TA007]
 gi|324118743|gb|EGC12635.1| transcriptional regulator [Escherichia coli E1167]
          Length = 141

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138


>gi|325661219|ref|ZP_08149846.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472726|gb|EGC75937.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 180

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R L+  A +++  P  IS IA    ISE +L +++  L KAG+++++RG 
Sbjct: 30  KLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRGA 89

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GG  L R  + I++ DV++A E +    EC   H  + C   G C    V +K   +  
Sbjct: 90  GGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESIN 149

Query: 120 DVLTQYSIECLVRNRSSIK 138
             + +  ++ LV    ++K
Sbjct: 150 QTVDEIKLDRLVEESKAMK 168


>gi|167037461|ref|YP_001665039.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040123|ref|YP_001663108.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256752922|ref|ZP_05493755.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|289578240|ref|YP_003476867.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermoanaerobacter italicus Ab9]
 gi|297544520|ref|YP_003676822.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|300914207|ref|ZP_07131523.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X561]
 gi|307265215|ref|ZP_07546774.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|307724558|ref|YP_003904309.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
           X513]
 gi|320115875|ref|YP_004186034.1| Rrf2 family transcriptional regulator [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326390150|ref|ZP_08211711.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|166854363|gb|ABY92772.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X514]
 gi|166856295|gb|ABY94703.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748202|gb|EEU61273.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|289527953|gb|ADD02305.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           italicus Ab9]
 gi|296842295|gb|ADH60811.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|300889142|gb|EFK84288.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X561]
 gi|306919837|gb|EFN50052.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|307581619|gb|ADN55018.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
           X513]
 gi|319928966|gb|ADV79651.1| transcriptional regulator, Rrf2 family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325993798|gb|EGD52229.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 149

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YGI+ +   A++  + P  +  IAE   +SE +L +++  L KA +V++VRG
Sbjct: 1   MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLIAILRKADLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   A+C       +C   G C    V+ +  ++ 
Sbjct: 61  AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVLEDTPFECSRAGGCPTKLVMERIRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V+   +++ +V +   + +
Sbjct: 121 NKVIDSITLQDMVDDYRRLNQ 141


>gi|86139275|ref|ZP_01057845.1| rrf2 family protein [Roseobacter sp. MED193]
 gi|85824119|gb|EAQ44324.1| rrf2 family protein [Roseobacter sp. MED193]
          Length = 157

 Score =  168 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 78/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA + D     S+IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCAANADRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  ++I I +V +  E +  + ECFA     CPL  +C L   L  A  AF+ 
Sbjct: 61  NGGMALGRRPEEIQIGNVFRDVEGALPMVECFADADNTCPLASACRLKVALSDAAQAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   ++E LV +   + +I  
Sbjct: 121 SLDDITLEALVCDNHDLMRILQ 142


>gi|260887774|ref|ZP_05899037.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           sputigena ATCC 35185]
 gi|330838672|ref|YP_004413252.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
           ATCC 35185]
 gi|260862450|gb|EEX76950.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           sputigena ATCC 35185]
 gi|329746436|gb|AEB99792.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
           ATCC 35185]
          Length = 143

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R++M  A++  + P RI  IA    ISE +L +I+  L KAG V++ RG
Sbjct: 1   MKISTRGRYALRLMMDIAMNGQNEPVRIKDIARRQEISEKYLEQIVSVLNKAGFVKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R   + T   ++   E S     C    + DCP    C    + +K   A  
Sbjct: 61  PQGGYRLMRAPQEYTAGSILCLIEGSLAPVACMDMEENDCPRHERCATLFLWQKLHEAMK 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DV+   S+  L+  +  + +
Sbjct: 121 DVIENVSLSDLIEMQRELDE 140


>gi|149203563|ref|ZP_01880532.1| rrf2 family protein [Roseovarius sp. TM1035]
 gi|149142680|gb|EDM30722.1| rrf2 family protein [Roseovarius sp. TM1035]
          Length = 150

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 86/142 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IR+LM+CA ++D     ++IAE C ISE  L +++  L + G + T RGR
Sbjct: 1   MRITKRTNIAIRLLMFCAANSDRLVTKAEIAERCNISESHLAQVINRLSQLGFLYTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RP  QIT+ DV +  E+   VAECFA     CPL  +C L   L  A+ AF+ 
Sbjct: 61  TGGVRLGRPMSQITVGDVFRQLEQHTPVAECFADVDNTCPLTKACRLRVALVDAVEAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + +++ LV N  ++  IF+
Sbjct: 121 HLDEVTLDALVCNNDALFAIFS 142


>gi|268609758|ref|ZP_06143485.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 145

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H D     + +IAE   IS+ +L +I+  L K+ ++ T RG
Sbjct: 1   MKISTKGRYALRMLFDLASHYDEGFISLKEIAERQNISKKYLEQIVPLLNKSNLLRTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R A++IT+ DV++ATE S     C      +CP  G C    V     ++  
Sbjct: 61  NKGGYMLARKANEITVADVLEATEGSLAPVACLEFEPNECPRAGECSTLFVWEGLYSSIK 120

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ ++ + S +
Sbjct: 121 KYLSSISLQDIIDHSSDL 138


>gi|121604234|ref|YP_981563.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593203|gb|ABM36642.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 168

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 77/132 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R LMY A + +    I  IA+A  I++  L K++  L   G+VE++RGR
Sbjct: 1   MRLTTYTDYALRTLMYLAANRERLVTIQDIADAHGIAKNHLTKVVHQLGILGVVESLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   QI I  VV++TE  F++AECF   K  C +  +C L  VL  A  A+  
Sbjct: 61  NGGLRLGREPGQINIGAVVRSTEPDFYMAECFDPGKSHCIMSAACSLKDVLNDATMAYLA 120

Query: 121 VLTQYSIECLVR 132
           VL   +++ L++
Sbjct: 121 VLDGVTLDYLMK 132


>gi|325290921|ref|YP_004267102.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966322|gb|ADY57101.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 149

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A++  + P  I+ IA+   ISE +L ++L  + + G+++++RG
Sbjct: 1   MKISTKGRYGLRAILDVALNEKEGPVTINSIAKRQEISERYLEQLLIVMKQRGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L +   +I++ DV++A E      +C      + C     C    V      + 
Sbjct: 61  FQGGYLLNKEPREISVGDVIRALEGPIAPVDCVNDDDTEQCSRSNYCVTKIVWEDLKQSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL  YS+  L+     ++ I
Sbjct: 121 TKVLDSYSLRDLMEEEEKVRSI 142


>gi|164688544|ref|ZP_02212572.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
           16795]
 gi|164602957|gb|EDQ96422.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
           16795]
          Length = 157

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   ++ H+  P  I  IA    I E +L +I   L KA ++++VRG
Sbjct: 1   MKLSTKGRYGLKAMFELSLTHSKGPVSIKTIAAKQNIPEQYLEQIFSKLKKANLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R A +IT+ DV+   E    +++C    K  C    SC    V  K  +A  
Sbjct: 61  AQGGYLLSRKASEITVYDVLTVLEGPVSISDCLLD-KDSCENSDSCVTKLVWEKMRDAMD 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +V+   ++  +V N +    I
Sbjct: 120 NVMKSITLCDMVNNYNETHNI 140


>gi|78066618|ref|YP_369387.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77967363|gb|ABB08743.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 171

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL   + Q+T+  VV+ATE  F +  CF++      C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPESLQLTVGQVVRATESDFALVGCFSAEGESRGCVIEPQCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  LV   + +  +  
Sbjct: 121 FAELDRHTLGELVEPAAPLVALLG 144


>gi|225573521|ref|ZP_03782276.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039118|gb|EEG49364.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
           10507]
          Length = 142

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A+H++  P  I  IA    IS  +L +++  + +AG+V +VRG
Sbjct: 1   MKLSTKGRYGLRAMVDLAVHSETGPVSIQSIANRQDISVSYLEQLVGKMRRAGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
             GG RL +   +I++ DV++A E +    +C  +     C     C    V +K   + 
Sbjct: 61  ATGGYRLAKSPSEISVGDVLRALEGTLDAVDCPGNLEVSTCKASQKCVTKYVWKKINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
              +    IE LV+    +  +
Sbjct: 121 SQAVDTIMIEQLVQESKKVNGL 142


>gi|164686973|ref|ZP_02211001.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
           16795]
 gi|164603858|gb|EDQ97323.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
           16795]
          Length = 147

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  Y +R+++  AI++D    RI  IA+   IS+ +L +I+  L +AG +++VRG 
Sbjct: 5   KISTKGRYALRLMIDLAINDDGKCIRIRDIAKRQEISDKYLEQIISILNRAGYIKSVRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL +   + T+  +++ TE S     C       C     C    + +K   A  D
Sbjct: 65  QGGHRLAKHPSEYTVGMILRLTEGSLSPVACLDDEVNQCTRQAQCATLELWKKLDKAISD 124

Query: 121 VLTQYSIECLVR 132
           V+   ++E LV+
Sbjct: 125 VVDNVTLEDLVQ 136


>gi|319763901|ref|YP_004127838.1| transcriptional regulator, rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|330823835|ref|YP_004387138.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317118462|gb|ADV00951.1| transcriptional regulator, Rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|329309207|gb|AEB83622.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 163

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA   +   P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L SVL  A  A+
Sbjct: 61  GRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCRMSSHCRLQSVLSNATRAY 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             VL   S+  LV  + +  +
Sbjct: 121 LAVLDGLSVADLVAPQPAASQ 141


>gi|46578944|ref|YP_009752.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603455|ref|YP_967855.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|464693|sp|P33395|RRF2_DESVH RecName: Full=Protein rrf2
 gi|290384|gb|AAA72001.1| rrf2 [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448357|gb|AAS95011.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563684|gb|ABM29428.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311232802|gb|ADP85656.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 150

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A+H  + P  I  IA+   IS  +L K+++ L KAG + +  G
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHGSEQPVSIKDIAQRQGISVKYLEKLIRVLRKAGYITSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L   A+ I + DVV A EE     EC       CP +  C   ++  +A  A +
Sbjct: 61  AHGGYQLAHKAEDIPVGDVVYALEEMEAPVEC-DEENPCCPRMAVCLTRTIWGEAAKAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L  +++  L+R+ S
Sbjct: 120 RKLNTFTLADLMRDAS 135


>gi|298291178|ref|YP_003693117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927689|gb|ADH88498.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 146

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RV+++   H+D    I +IA    +S   L K++Q L  AG VETVRGR
Sbjct: 1   MKLTRYTDYAMRVMIHLGTHDDRLASIPEIARIYDLSHSNLMKVVQDLGHAGYVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL RPADQI + ++V+ TE  F + +C       C +  +CGL  +L +A  AF  
Sbjct: 61  HGGVRLARPADQINLGELVRHTEAGFDLVDCQG-----CLIAPACGLPGILAEATRAFLS 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL +Y++  L+  RS+++++F
Sbjct: 116 VLDKYTVADLLGRRSALRQLF 136


>gi|156932409|ref|YP_001436325.1| transcriptional repressor NsrR [Cronobacter sakazakii ATCC BAA-894]
 gi|156530663|gb|ABU75489.1| hypothetical protein ESA_00188 [Cronobacter sakazakii ATCC BAA-894]
          Length = 166

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TD+G+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG+
Sbjct: 27  QLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK 86

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+  E    +  C ++    C +  +C L  VL  A+  F  
Sbjct: 87  NGGIRLGKPAATIRIGDVVRELE-PLSIVNCSSAF---CHITPACRLKQVLGDAVARFLQ 142

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV+    + K+ 
Sbjct: 143 ELDNYTLADLVQENQPLYKLL 163


>gi|296116983|ref|ZP_06835584.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976465|gb|EFG83242.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 167

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y     D    I  IA+   ISE  L K++  L + G + T RGR
Sbjct: 1   MRLTLYTDYALRTLLYLGAKPDTRVAIHDIAQTYDISENHLVKVVHKLGRGGFIVTKRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R    I I D+V+ TEE   +  C    K  C L G C L  ++ +ALNAF  
Sbjct: 61  NGGLLLARAPQDIRIGDIVRYTEEDMGIVAC-NQEKGSCRLAGVCRLQGLMGEALNAFMS 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL + ++  ++ +   ++
Sbjct: 120 VLDRRTLADVMTHPHLLQ 137


>gi|67459267|ref|YP_246891.1| putative transcriptional regulator [Rickettsia felis URRWXCal2]
 gi|67004800|gb|AAY61726.1| Putative transcriptional regulator [Rickettsia felis URRWXCal2]
          Length = 142

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|260599473|ref|YP_003212044.1| transcriptional repressor NsrR [Cronobacter turicensis z3032]
 gi|260218650|emb|CBA33971.1| HTH-type transcriptional repressor nsrR [Cronobacter turicensis
           z3032]
          Length = 141

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+  E    +  C ++    C +  +C L  VL  A+  F 
Sbjct: 61  KNGGIRLGKPAATIRIGDVVRELE-PLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV+    + K+ 
Sbjct: 117 QELDNYTLADLVQENQPLYKLL 138


>gi|261342839|ref|ZP_05970697.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
           35316]
 gi|288314881|gb|EFC53819.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
           35316]
          Length = 141

 Score =  167 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPAGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + DVV+  E    +  C ++    C +  +C L   L +A+ +F 
Sbjct: 61  KNGGIRLGKPAQSIRVGDVVRELE-PLSLVNCSSAF---CHITPACRLKQALSQAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|288940602|ref|YP_003442842.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum
           DSM 180]
 gi|288895974|gb|ADC61810.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum
           DSM 180]
          Length = 160

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH    P  ++ IA+   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHQGQGPIALADIAQRQGISLSYLEQLFAKLRKRGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + +V+ A +ES     C  +H  +C   G C    +     +  +
Sbjct: 61  PGGGYNLARKPVEIHVAEVIAAVDESVDTTRCGGAH--NCQNNGPCLTHDLWHDLSDRIY 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L Q  ++ LV  R S+ +
Sbjct: 119 DYLNQIDLQTLVDQRDSLGQ 138


>gi|170733208|ref|YP_001765155.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|254248038|ref|ZP_04941359.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
 gi|124872814|gb|EAY64530.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
 gi|169816450|gb|ACA91033.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
          Length = 171

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+ +VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L ++++  L    S +  +  
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145


>gi|237749286|ref|ZP_04579766.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229380648|gb|EEO30739.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 139

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++TDY +R+LMY A H +    I++IAE   IS   L KI+  L  +  +E++RG 
Sbjct: 1   MQLTQQTDYALRILMYAAAHPERLVNITEIAELYGISRSHLTKIVANLASSQYLESIRGN 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG+RL +PA +I I ++++  E    + +C +  +  C +  +C L  V  +A +AF  
Sbjct: 61  KGGIRLNKPASEINIGEIIRRFE-PLAIVDCMSKTR-SCVITPNCKLKHVFFEATDAFLK 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
              QY++  ++ N + I+++
Sbjct: 119 TFDQYTLADML-NPTLIRQL 137


>gi|323702187|ref|ZP_08113854.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532874|gb|EGB22746.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 147

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  +  +AE   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MRLSTKGHYGLKAMFDLAMHYGAEPIPLKLVAERQSLSEHYLEQLIAVLRKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L RP  +I + DV++A E      +C +  +   C  V  C    +  K  ++ 
Sbjct: 61  AQGGYILARPPAEIKVGDVIRALEGPIAPLDCVSEQEPTLCEKVDYCISRDIWAKVRDSI 120

Query: 119 FDVLTQYSIECLVRNRSS 136
            +VL   ++E + R    
Sbjct: 121 AEVLDSITLEDMCREAEK 138


>gi|182418878|ref|ZP_02950135.1| Rrf2 family protein [Clostridium butyricum 5521]
 gi|237667382|ref|ZP_04527366.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182377161|gb|EDT74729.1| Rrf2 family protein [Clostridium butyricum 5521]
 gi|237655730|gb|EEP53286.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 150

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R +   A H    P  I  I++   +SE +L ++  PL +A I+ ++RG
Sbjct: 1   MKLSTKGRYGVRAMAELAAHYGGAPISIKTISKEQNLSEYYLEQLFSPLRRANIIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+   +IT+ D++   E    +A+C       C    SC    V  K  N+  
Sbjct: 61  AQGGYVLCKAPSEITVGDIMTILEGPIEIADCIDG--YACDSEHSCATKFVWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DV+   S++ +V N   IKK
Sbjct: 119 DVMNSISLQDIVDNYEKIKK 138


>gi|188580176|ref|YP_001923621.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343674|gb|ACB79086.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           populi BJ001]
          Length = 160

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G+++T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TE+   + ECF++    C +   C L   L +AL AF  
Sbjct: 61  GGGLRLAKPPGEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
           VL +Y++  L+       I ++  
Sbjct: 119 VLDRYTLADLLGGSEGDEIARLLG 142


>gi|330993730|ref|ZP_08317664.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329759304|gb|EGG75814.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 151

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y  IH D    I ++A+A  ISE  L KI+  L + G +ET+RGR
Sbjct: 1   MRLTLHTDYALRTLLYLGIHTDRLTSIREVAQAYGISENHLVKIIHRLGQGGFIETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114
            GG+RL RPA  I I DVV+ TEE   +  C             C L  +C L  VL +A
Sbjct: 61  NGGLRLGRPAASILIGDVVRYTEEDMALVNCMQPADPERPDMKPCILADACRLRGVLGEA 120

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
           L +F  VL +Y++  ++ +R 
Sbjct: 121 LGSFIAVLDRYTLADVITDRE 141


>gi|134298630|ref|YP_001112126.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
           reducens MI-1]
 gi|134051330|gb|ABO49301.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           reducens MI-1]
          Length = 149

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  +  +AE   ISE +L +++  L K G+V+++RG
Sbjct: 1   MRLSTKGHYGLKAMFDLAMHYGSEPIPLKVVAERQNISEHYLEQLIAVLRKVGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +P   I + DVV+A E      +C +      C  V  C    +  +  ++ 
Sbjct: 61  AQGGYILAKPPSDIKVGDVVRALEGPIAPLDCVSELEPTVCEKVDYCISRDIWARVRDSI 120

Query: 119 FDVLTQYSIECLV 131
            +VL   ++E + 
Sbjct: 121 AEVLDSITLEDMC 133


>gi|154503925|ref|ZP_02040985.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
 gi|153795524|gb|EDN77944.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
          Length = 156

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A H  + P  I+ IAE   ISE +L +++  L KAGI++++RG
Sbjct: 1   MKLSTKGRYGLRALIDLAQHGGEGPVSITSIAERQEISERYLEQLMSKLKKAGIIQSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +  +++++ +V++A E      EC     +  C    +C    V ++  ++ 
Sbjct: 61  AQGGYVLAKELEEVSVGEVLRALEGDLNPVECSGFLLEGGCQAADNCVTKYVWQRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              + + +++ LV    ++K+
Sbjct: 121 NQTVDEMNLKALVEVGENLKE 141


>gi|295676448|ref|YP_003604972.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
 gi|295436291|gb|ADG15461.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
          Length = 176

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  D  + I  I+EA  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYALRVLLYLAVRGDGLSTIQDISEAYGISKNHLMKVVQQLGEFGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ DVV+ TE  F +  C    +     C +   C L   L+ A  A
Sbjct: 61  NGGLRLSAQSLSLTVGDVVRVTESDFALVGCLPDRQGQQRPCVITSQCRLRGALQAANLA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
           F   L +++I  + + +S +  +   G
Sbjct: 121 FLAELDRFTIGDVAQPKSPLAALLGLG 147


>gi|332285364|ref|YP_004417275.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429317|gb|AEC20651.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 151

 Score =  167 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LMY   H D    I+++A+A  ISE  L KI   L + G +ET+RG+
Sbjct: 1   MRLTTMTDYAMRLLMYVGRHPDRLCTIAEVAQAYGISEPHLMKITHRLAQRGWLETIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I +  VV+ TE    + ECF ++   C L G C LT+++  AL  F  
Sbjct: 61  NGGMRLAHPPEEINLGAVVRDTENDLALVECFVANNA-CTLSGQCNLTAIIDGALQQFMQ 119

Query: 121 VLTQYSIECLV 131
            L +Y++  ++
Sbjct: 120 HLDRYTLADII 130


>gi|167621980|ref|YP_001672274.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352002|gb|ABZ74615.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           halifaxensis HAW-EB4]
          Length = 149

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYG+R LMY A++++  +  RIS+I E   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDYGLRTLMYLAVNSERESLFRISEITEVFDLSANHISKVVHHLGKLGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PA +I I  VV+A E S    +C    K  C    +C L   L  A+NA+
Sbjct: 61  GKSGGFKLAKPAAEINIGQVVRALENSLAPIDCS---KPYCLFTPACKLKGALGDAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y+++ +V N+  +K + 
Sbjct: 118 LAVLDAYTLDMIVTNKQELKSLL 140


>gi|254485469|ref|ZP_05098674.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
 gi|214042338|gb|EEB82976.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
          Length = 152

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 73/137 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T+Y +R L   AI      R+  +A+   +S   + KI+  L KAG +ETVRGR
Sbjct: 1   MKLTSYTNYAMRSLQLAAIKAPDLVRVDDVAKIHNLSRPHIMKIVHELGKAGYLETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R    I + DVV+ TE    V ECF   K  CPL+G C L+  +++A  AF  
Sbjct: 61  GGGFRLARDPADIIVGDVVRITEGPLDVVECFNPEKNTCPLIGICILSRKMQEATAAFMA 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   +I  +  NR  +
Sbjct: 121 VLDDLTIADITANRGQL 137


>gi|296100945|ref|YP_003611091.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055404|gb|ADF60142.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 158

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG+
Sbjct: 19  QLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRGK 78

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+  E    +  C +     C +  +C L   L  A+ +F  
Sbjct: 79  NGGIRLGKPAQSIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSLAVQSFLK 134

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 135 ELDNYTLADLVEENQPLYKLL 155


>gi|294634461|ref|ZP_06712997.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
 gi|291092171|gb|EFE24732.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
          Length = 140

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       ISQ+ E   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALVYMAALPEGQMTSISQVTEVYGVSRNHMVKIINQLSRAGFVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPA +I I DVV+  E    +  C  S    C +  +C L  VL++A  AF 
Sbjct: 61  KNGGIRLGRPASEIRIGDVVRELE-PLTLVNCSQSF---CHITPACRLKPVLQRATEAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L + ++  L+ + S + K+ 
Sbjct: 117 AELDKCTLADLIEHNSPLYKLL 138


>gi|220929352|ref|YP_002506261.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium cellulolyticum H10]
 gi|219999680|gb|ACL76281.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulolyticum H10]
          Length = 148

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H ++    +  IAE   +SE +L ++   L K+G+V+++RG
Sbjct: 1   MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQLFSSLKKSGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R AD++T+ D++++ E +    +C       +C     C    V  K  +  
Sbjct: 61  AQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCDRADECVTVDVWAKIRDKV 120

Query: 119 FDVLTQYSIECLVRN 133
            +V+   ++  LV  
Sbjct: 121 NEVVDSITLADLVSE 135


>gi|121595468|ref|YP_987364.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120607548|gb|ABM43288.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 166

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA     + P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L +VL  A  A+
Sbjct: 61  GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120

Query: 119 FDVLTQYSIECLV 131
             VL  +++  LV
Sbjct: 121 LAVLDSFTVADLV 133


>gi|300721495|ref|YP_003710770.1| hypothetical protein XNC1_0462 [Xenorhabdus nematophila ATCC 19061]
 gi|297627987|emb|CBJ88536.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 139

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSHLGLVNAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I DVV++ E    +  C A     C +  +C L SVL +A+  F 
Sbjct: 61  KNGGISLGKPAREIRIGDVVRSLE-PLALVNCSA-----CQITSACRLKSVLNQAVENFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  +V++ S + ++ 
Sbjct: 115 EELDKHTLADMVKDNSPLYQLL 136


>gi|154498777|ref|ZP_02037155.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
           29799]
 gi|150272167|gb|EDM99371.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
           29799]
          Length = 144

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI   D    +  +AE   IS+ +L +I+  L + G+V +VRG
Sbjct: 1   MKISTKGRYALRLMLDLAIQPGDSAVPLRDVAERQEISDKYLEQIVTQLARGGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  ++ T+ ++++  E +     C +     C     C    V ++  +A  
Sbjct: 61  AGGGYLLTRTPEEYTVGEILRQLEGNLAPVSCVSGGSC-CGRADRCVTLEVWQQIQDAVD 119

Query: 120 DVLTQYSIECLVRNRSS 136
            V+   ++  LV+    
Sbjct: 120 GVVDNITLADLVKRYHE 136


>gi|187933794|ref|YP_001885366.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
 gi|188588800|ref|YP_001920513.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|251778728|ref|ZP_04821648.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|187721947|gb|ACD23168.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
 gi|188499081|gb|ACD52217.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|243083043|gb|EES48933.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 147

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +    P  I  I++   +SE +L ++  PL KA I+ ++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLAFNYGGPPTSIKTISKRQNLSEYYLEQLFSPLRKANIIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+P  +IT+ D++   E    +A+C     ++C  V SC    + +K  ++  
Sbjct: 61  AQGGYVLCKPPSEITVGDIMHVLEGPVEIADCIDG--VECSNVDSCATKLLWQKIKDSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           DV+   +++ ++ +    +
Sbjct: 119 DVMNSITLKDIIDDYEGAR 137


>gi|78355694|ref|YP_387143.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218099|gb|ABB37448.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 146

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R+ YG R+L+  A+H   +D P  I +IA+   IS  +L K+++ L  AG + + 
Sbjct: 1   MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRVLKGAGYISSR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G +GG  L RP + I + DVV A EE+    EC       CP +  C   ++  +A  A
Sbjct: 61  LGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPEPC-CPRMDYCLTRTIWNEAAKA 119

Query: 118 FFDVLTQYSIECLVRNRS 135
            ++ L  +++  L+ +  
Sbjct: 120 MYEKLNSFTLADLINDAE 137


>gi|107028973|ref|YP_626068.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116689869|ref|YP_835492.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105898137|gb|ABF81095.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia AU 1054]
 gi|116647958|gb|ABK08599.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
          Length = 171

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+ +VV+ATE  F +  CF++  ++   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGVESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L ++++  L    S +  +  
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145


>gi|284006631|emb|CBA71892.1| transcriptional regulator [Arsenophonus nasoniae]
          Length = 140

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    I+++     +S   + KI+  L + G+V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPKDKMTNITEVTNVYGVSRNHMVKIINQLSRVGLVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PADQI I +VV+  E    +  C + +   C +  +C L  +L +A++ F 
Sbjct: 61  KNGGIYLGKPADQIRIGEVVRLLE-PLALVNCGSDY---CHITSACRLKQILNQAIDHFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L +Y++  L++N   + K+ 
Sbjct: 117 NELDKYTLADLIKNNEPLYKLL 138


>gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038392|gb|ABF65004.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
          Length = 154

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 79/142 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +R+LMYCA++       S+IA  C ISE  L +++  L + G ++T RGR
Sbjct: 1   MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R A  I I DV +  E    + ECFA     CPLV +C L   L +A  AF+ 
Sbjct: 61  NGGLALGRAAADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   S+E L  +   +++I +
Sbjct: 121 ALDGISLESLTCDNIDLQRILS 142


>gi|323526163|ref|YP_004228316.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1001]
 gi|323383165|gb|ADX55256.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1001]
          Length = 166

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I+EA  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISEAYGISKNHLMKVVQRLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ ++V+ATE  F +  C          C +   C L +VL  A +A
Sbjct: 61  NGGLRLAERSRTLTVGEIVRATENDFALVACLPDQDGQRRPCVITPQCRLRNVLEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++IE +   +  +  +  
Sbjct: 121 FLAELDRHTIEEVSGPQGPLAALLG 145


>gi|75676837|ref|YP_319258.1| hypothetical protein Nwi_2653 [Nitrobacter winogradskyi Nb-255]
 gi|74421707|gb|ABA05906.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 142

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 1   MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+S+   CP+  SC L + LR+ALNAF  
Sbjct: 61  SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNN-RCPITSSCRLRAPLREALNAFTT 119

Query: 121 VLTQYSIECLV 131
            L +Y++  L+
Sbjct: 120 TLDRYTLADLI 130


>gi|209884294|ref|YP_002288151.1| putative transcriptional regulator [Oligotropha carboxidovorans
           OM5]
 gi|209872490|gb|ACI92286.1| putative transcriptional regulator [Oligotropha carboxidovorans
           OM5]
          Length = 149

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 3/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY A  ND    I + AEA  IS   L K+   L +AG ++  RGR
Sbjct: 1   MRLTNFSDYALRILMYAAAQNDRLITIEETAEAYGISRAHLMKVANQLTRAGYLKATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  D+I + DV++ATE  F + EC  ++ + C +   C L   L +AL AF +
Sbjct: 61  SGGLALAKRPDRIRLSDVLRATEPDFSLVECLTTNNL-CVISPRCRLRGALNEALAAFLE 119

Query: 121 VLTQYSIECLVRNRSS--IKKIFNAG 144
            L  Y+++ L+       ++ +  AG
Sbjct: 120 TLDGYTLDDLILKPKDFGVRPVATAG 145


>gi|114331398|ref|YP_747620.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
           eutropha C91]
 gi|114308412|gb|ABI59655.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
           C91]
          Length = 154

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y  +  +  + I++I++   IS   + KI+  L + G +ET+RG+
Sbjct: 1   MKLTNYSDYALRILIYLGLKREKLSTITEISDCYRISRNHVVKIVHHLGQLGYLETLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  + I I +V++ TE S  + ECF+     C +  SC L S++ +AL AF  
Sbjct: 61  HGGIRLARAPEMINIGEVMRHTETSMDLVECFSDQNA-CIICDSCVLRSIIAEALAAFMT 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  L+  +  +KK   
Sbjct: 120 VLDSYTLADLMVPKRQLKKQLQ 141


>gi|239908516|ref|YP_002955258.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239798383|dbj|BAH77372.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 148

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+H  + P RI  IA    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALHGQNGPVRIKDIAARQGVSVKYLEKLVRDLKEAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L +P D I++ D+V+A E    + EC       CP    C    V  +A  A  
Sbjct: 61  PRGGHELDKPLDAISVGDIVRALEGDLSLVEC-GDETGPCPRQADCLTRGVWMEAARAMH 119

Query: 120 DVLTQYSIECLVR 132
           + L   ++  LV 
Sbjct: 120 EKLDSITLADLVA 132


>gi|182678939|ref|YP_001833085.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634822|gb|ACB95596.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 150

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK-AGIVETVRG 59
           M LT  TDY +R L++  +H +    I +IA+A  ISE  L K++Q L +  G +ET RG
Sbjct: 1   MRLTLHTDYALRTLIFLGLHQERRVSIHEIADAYGISENHLMKVIQKLGRPDGFIETTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117
           R GG+RL R  D+I + DVV+ TEE   +  CF  A     C L G CGL S+L +AL A
Sbjct: 61  RGGGLRLARAPDKIRLDDVVRYTEEDMAIVACFQQAKDHEACVLTGYCGLQSILGEALAA 120

Query: 118 FFDVLTQYSIECLVR--NRSSIKKIFN 142
           F  VL +Y++  L+   +R+ I ++  
Sbjct: 121 FLAVLQRYTLADLLSSPDRAQIMRLLT 147


>gi|320539671|ref|ZP_08039335.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
           str. Tucson]
 gi|320030283|gb|EFW12298.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
           str. Tucson]
          Length = 141

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +  D    ISQ+ E   +S   + KI+  L + G V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPPDKMTSISQVTEVYGVSRNHMVKIINQLSRVGFVTAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +P + I + DVV+A E    +  C +     C +  +C L  VL + +  F 
Sbjct: 61  KNGGIRLSKPGETIRLGDVVRALE-PLSLVNCHSDF---CHISPACRLNQVLHQGVQNFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L  +++  +V   S + K+ 
Sbjct: 117 EELNNHTLADMVEGNSLLYKLL 138


>gi|188491831|ref|ZP_02999101.1| transcriptional repressor NsrR [Escherichia coli 53638]
 gi|188487030|gb|EDU62133.1| transcriptional repressor NsrR [Escherichia coli 53638]
          Length = 141

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A  I I DVV+  E    +  C +     C +  +C L   L KA+ +F 
Sbjct: 61  KNGGIRLGKSASAIRIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV     + K+ 
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138


>gi|330003373|ref|ZP_08304594.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
 gi|328537001|gb|EGF63292.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
          Length = 156

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG+
Sbjct: 17  QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA QI + DVV+  E    +  C +     C +  +C L   L +A  +F  
Sbjct: 77  NGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV     + K+ 
Sbjct: 133 ELDNYTLADLVEKNQPLYKLL 153


>gi|304316708|ref|YP_003851853.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778210|gb|ADL68769.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 149

 Score =  167 bits (423), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++  + P  +  IAE   +SE +L +++  L KA +V+++RG
Sbjct: 1   MKLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   ++C       +C   G C    V+ K  +A 
Sbjct: 61  AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDMPFECSRSGGCPTKLVMEKIRDAI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
             V+   +++ +V +   +
Sbjct: 121 NKVIDSITLQDMVDDYKKM 139


>gi|52842742|ref|YP_096541.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629853|gb|AAU28594.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 143

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +  +C L SVL +A  AF  
Sbjct: 60  NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|212632981|ref|YP_002309506.1| hypothetical protein swp_0072 [Shewanella piezotolerans WP3]
 gi|212554465|gb|ACJ26919.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 149

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+H +  +  RIS+I +   +S   + K++  L K G ++TVR
Sbjct: 1   MQLTRYTDFGLRTLMYLALHPERESLFRISEITDVFDLSANHISKVVHHLGKLGYLKTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L  PA +I + DVV+A E S    +C    K  C    +C L  VL +A+NA+
Sbjct: 61  GKSGGFKLAMPASEINVGDVVRALENSLSSIDCS---KPYCLFTPACKLKGVLAEAVNAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL  Y++E +V N+  +K + 
Sbjct: 118 LAVLDGYTLEMIVTNKKELKSLL 140


>gi|85860337|ref|YP_462539.1| rrf2 family protein [Syntrophus aciditrophicus SB]
 gi|85723428|gb|ABC78371.1| rrf2 family protein [Syntrophus aciditrophicus SB]
          Length = 184

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R ++  A+H N+ P  +  IA+   ISE +L++++ PL  AG++ + RG
Sbjct: 43  MKLSTRGRYGLRFMLDLAVHYNEGPIFLKDIAQRQGISEKYLWQLIHPLKTAGLINSTRG 102

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  + IT+ D+++  E    + +C  +  I C    +C   +V ++A     
Sbjct: 103 AHGGYQLAKNPEDITLKDIMQVVEGPLCLVDCVDNASI-CERASTCITRNVWQEATRVIL 161

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L   ++E +V+ ++  +K
Sbjct: 162 KTLESLTLETMVKRQTEKEK 181


>gi|255283408|ref|ZP_05347963.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
 gi|255266056|gb|EET59261.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
           formatexigens DSM 14469]
          Length = 152

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A++  +    IS +A    ISE +L ++   L KAG++ + RG
Sbjct: 1   MKLSTKGRYGLRALIDLAVYCGEEAVPISSVAARQGISESYLEQLFAKLRKAGLIISERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG RL +PA++I++ D+++A E +    EC     +  C     C    V ++   + 
Sbjct: 61  AQGGYRLAKPAEEISVGDILRALEGNLDAVECPGLKEEAGCENADFCVTKYVWQRINESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + + +  ++ LVR     + 
Sbjct: 121 TEAVDEIRLDQLVRESREAQD 141


>gi|317055144|ref|YP_004103611.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315447413|gb|ADU20977.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 144

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A H +D    I  IAE   IS+ +L +I+  L ++G V +VRG
Sbjct: 1   MKISTKGRYALRLMTDLAEHKDDGYIPIKVIAERQNISDKYLEQIISILSRSGYVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P ++ T+  +++ TE S     C  + +  CP   +C    +  K  +A  
Sbjct: 61  AGGGYTLAYPPEKYTVGMILRLTEGSLAPVACLETDENLCPRAKACPTLFIWEKLYSAIN 120

Query: 120 DVLTQYSIECLVRN 133
            V+   +I  +V  
Sbjct: 121 YVVDGITIADIVAR 134


>gi|225018254|ref|ZP_03707446.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
           DSM 5476]
 gi|224948951|gb|EEG30160.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
           DSM 5476]
          Length = 145

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R++   A H N     + +IA+   IS+ +L +I+  L  AG+V++VRG
Sbjct: 1   MKISTKGRYGLRLMFELAYHYNKGLVPLKEIAKRQEISDKYLEQIIMRLNHAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L  P ++ T+ +V+   E S  V EC  ++ ++C  + SC    +  K   A  
Sbjct: 61  AQGGYMLAAPPEETTVEEVLTVLEGSLCVVECIGANGVECKNINSCPTYGIWSKINQAIQ 120

Query: 120 DVLTQYSIECLVRN 133
            V++  ++  +V +
Sbjct: 121 QVVSNITLADMVED 134


>gi|304311681|ref|YP_003811279.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
 gi|301797414|emb|CBL45634.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
          Length = 166

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----------YPNRISQIAEACCISELFLFKILQPLV 49
           M +T  TDY +RVLMY A+                  I +IA A  IS   L K++  L 
Sbjct: 1   MRITTFTDYTLRVLMYLALKEKPNEPSESRESVALATIPEIAAAYGISSNHLMKVVHHLA 60

Query: 50  KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
           + G +E++RG+ GG+RL    DQI +  V++A+E +  + EC       C +   C L +
Sbjct: 61  RTGTIESIRGKGGGIRLAAAPDQIRLGQVIRASESNGPIVECLGEEPGVCKIAPVCRLAN 120

Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           +L  A  A +  L QY++  L R    ++ + 
Sbjct: 121 ILGTAFEALYASLDQYTLADLTRQSKPLQGLL 152


>gi|206560284|ref|YP_002231048.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198036325|emb|CAR52221.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 172

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + Q+T+  VV+ATE  F +  CF+    +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFADSLQLTVGQVVRATENDFALVGCFSPDDSESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L    S +  +  
Sbjct: 121 FFAELDRHTIGELAEPASPLVALLG 145


>gi|256823249|ref|YP_003147212.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796788|gb|ACV27444.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
           DSM 16069]
          Length = 148

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL++ A+  D  + I +I+++  IS   L K++  L K G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLLFLALEKDRLSTIQEISDSYNISSNHLMKVVHALNKKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  +V+  E    + ECF+     C +   CGL +VL +AL  F  
Sbjct: 61  NGGMRLRMDPEDIRIGVLVREMEPDMSLVECFSPDN-KCVITPVCGLKAVLGEALKNFLA 119

Query: 121 VLTQYSIECLVRN--RSSIKKIF 141
            L +Y++  ++    +  + ++ 
Sbjct: 120 TLDKYTLADMLPQEYKPQLARLL 142


>gi|153855264|ref|ZP_01996430.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
 gi|149752263|gb|EDM62194.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
          Length = 154

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +++  P  I  +A    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKLSTKGRYGLRAMIDLARYSEKEPVSIGSVAARQEISERYLEQLVALLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALN 116
             GG  L +   +I++ D+++A E S    +C A        C     C    V +K  +
Sbjct: 61  ASGGYVLAKKPSEISVGDILRALEGSLEPVKCAAFDTTTGEGCMASDGCVTKYVWQKIND 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           +  D + Q  ++ L++   SI  
Sbjct: 121 SINDTVNQIMLDELIQESKSINP 143


>gi|159044209|ref|YP_001533003.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911969|gb|ABV93402.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 150

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 82/142 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LMYCA+H     R S++A+A   SE  L +++  L + G +ETVRGR
Sbjct: 1   MRLTTRTNLAMRTLMYCAVHTGRNIRTSEVAKATNASENHLGQVINMLGQTGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A  IT+  V +  E     AECF + +  CPL+  C L   L +AL AF+ 
Sbjct: 61  GGGIRLARNAQDITVGGVFRVFEAGTPFAECFDAKECTCPLISVCRLKGALGEALMAFYR 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   ++E LV++ + +K +  
Sbjct: 121 SLDAITLESLVKDNTGLKDLLG 142


>gi|331002201|ref|ZP_08325720.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411295|gb|EGG90711.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 154

 Score =  166 bits (422), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  Y +++++  AI+++ P +I+Q++++  ISE +L +I+  L KA +V+++RG 
Sbjct: 1   MKISTRGRYALKMMVEFAINSNSPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +P ++ T+ ++++ TE S    +C       C     C   ++ +K  +A  +
Sbjct: 61  QGGYLLVKPVEEYTVGEILRLTEGSLSPVDCL-DGNGSCVHSDFCVTQNLFKKVEDAINN 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           V+   S++ LV +   I+K
Sbjct: 120 VVDNISLQDLVDDELDIRK 138


>gi|197287183|ref|YP_002153055.1| transcriptional repressor NsrR [Proteus mirabilis HI4320]
 gi|226737673|sp|B4F272|NSRR_PROMH RecName: Full=HTH-type transcriptional repressor nsrR
 gi|194684670|emb|CAR46611.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 142

 Score =  166 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L   G VE +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I + +VV+A E    +  C A     C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAADIIVGEVVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L ++++  LV N S + K+ 
Sbjct: 117 KELDRHTLAELVENNSPLYKLL 138


>gi|302874700|ref|YP_003843333.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
 gi|307690687|ref|ZP_07633133.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
           cellulovorans 743B]
 gi|302577557|gb|ADL51569.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
          Length = 140

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+H    P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMFDLAVHYGSEPISIKSISDRQGISENYLEQLFSTLRKAELIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D+    E    V++C   +   C  +GSCG   +  K  N+F 
Sbjct: 61  AQGGYMLNKLPAEITVADIFDVLEGPIEVSDCIDENC--CSKIGSCGTRGLWIKIKNSFD 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +V + +  K
Sbjct: 119 EVTQSVTLQDMVDDYNKNK 137


>gi|188584942|ref|YP_001916487.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349629|gb|ACB83899.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 155

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ + +YG+R L++ A + N+ P  + +I++   IS  +L +I   L +  +V +VRG 
Sbjct: 6   KLSTKGEYGVRALVHLACNYNEGPISLREISKIEDISYQYLEQIFLDLRRNSLVLSVRGA 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
           +GG  L     +IT+ DV++A E       C A    S   +C    +C    V  +  +
Sbjct: 66  KGGYTLASHPKEITVGDVIRAVEGPIAPVSCVAKSTNSENTECDRSSTCAPRGVWLELRD 125

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
              +VL +++++ L    + I+K+
Sbjct: 126 RISEVLDEFTLQDLAVTDNDIEKL 149


>gi|170750041|ref|YP_001756301.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656563|gb|ACB25618.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 163

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +H    + I+ IA A  ISE  L K++  L + G++ T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLHEPEQSSIAAIARAYGISENHLTKVVHQLGRLGLIRTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P  +I +  VV+ TE+   + ECF      C +   C L  VL +AL AF  
Sbjct: 61  GGGLRLAMPPGEIVVGAVVRQTEDDLALVECFGGGA--CAITAPCRLRRVLGEALAAFLA 118

Query: 121 VLTQYSIECLV 131
           VL +Y++  L+
Sbjct: 119 VLDRYTLADLL 129


>gi|78485131|ref|YP_391056.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363417|gb|ABB41382.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 156

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TDY +RVLMY A+    D   +I  I+E   I +  L K++  L K  +++TVR
Sbjct: 12  MQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIPKNHLMKVVHQLGKENMIKTVR 71

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ LC+P   I +  V++  E +     C    K  C +   C L   L KA+ AF
Sbjct: 72  GKHGGIMLCQPPSDIIVGHVIRKFEMTLSPVNC---EKPLCQIQEICLLKPALFKAMEAF 128

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
              L QY++  + +N+  +K   
Sbjct: 129 LSTLDQYTLADITKNQPCLKDCL 151


>gi|323704140|ref|ZP_08115719.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536206|gb|EGB25978.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 149

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++  + P  +  IAE   +SE +L +++  L KA +V+++RG
Sbjct: 1   MRLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L  P D+IT+ DV++  E S   ++C       +C   G C    VL K  +A 
Sbjct: 61  AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDIPFECSRSGGCPTKVVLEKIRDAI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
             V+   +++ +V +   +
Sbjct: 121 NKVIDSITLQDMVDDYKKM 139


>gi|222111682|ref|YP_002553946.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221731126|gb|ACM33946.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
           TPSY]
          Length = 166

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA     + P  IS++AEA  IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL +PA +I +  +V+ TE  F + ECF +    C +   C L +VL  A  A+
Sbjct: 61  GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120

Query: 119 FDVLTQYSIECLV 131
             VL   ++  LV
Sbjct: 121 LAVLDSLTVADLV 133


>gi|226322609|ref|ZP_03798127.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
 gi|225208946|gb|EEG91300.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
          Length = 147

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R  +  A +  + P  IS I+    ISE +L +++  L KAG+V+++RG
Sbjct: 1   MKISTKGRYGLRAFIDLACYGAEEPVSISSISARQEISERYLEQLMAKLKKAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG RL + A ++++ DV++A E     A C A H  D C + GSC    V +K   + 
Sbjct: 61  AGGGYRLAKDAAEVSVGDVLRALEGDLEPATCAALHSEDSCEIQGSCITKYVWKKVNESM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              +    I  LV     +KK
Sbjct: 121 AQTVDSIMINTLVEMNKEVKK 141


>gi|254492393|ref|ZP_05105565.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
           DMS010]
 gi|224462285|gb|EEF78562.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
           DMS010]
          Length = 143

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY +R+L+Y AIH  D P  +   AE   +S   L K+ Q LV+  +V + RG
Sbjct: 1   MQLTTHSDYALRLLIYLAIHPGDKPATVKDAAERYGVSTNHLAKVAQRLVQEKLVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L    + I I  +++ TE +  + ECF      CP+   C L S LRKA  AFF
Sbjct: 61  RGGGLKLATTPESINIGQLIRKTE-NLELLECFGDDCA-CPIESVCILFSALRKAQKAFF 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           DVL  Y++  +V+N+  + +  N
Sbjct: 119 DVLDGYTLADVVKNKHRLMQSLN 141


>gi|328950902|ref|YP_004368237.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451226|gb|AEB12127.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 155

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +    P  +  +AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRGPGPVPLKDVAEAQEISQHYLEQIAAALRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL R  + IT L+VV+A E S     C    +  C  VG C   ++ ++   A  +
Sbjct: 61  KGGYRLARSPENITALEVVEAMEGSLAPVSCLEDPE-SCWQVGHCSTENLWKRVDAAMRE 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL + ++  L+  R  I+
Sbjct: 120 VLGKTTLRDLIEERRLIE 137


>gi|300715046|ref|YP_003739849.1| transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
 gi|299060882|emb|CAX57989.1| Transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
          Length = 145

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ EA  +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDYGLRALIYLAALPAGQMASITEVTEAYGVSRNHMVKIINQLSRAGYVAAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +I I  VV+  E    +  C       C +  +C L   L  A+ +F 
Sbjct: 61  KNGGIRLGKPASEIVIGQVVREME-PLQLVNC-----QPCLISPACRLKKALYDAVQSFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  L+ +   + K+ 
Sbjct: 115 AVLDGYTLADLLEDNHPLYKLL 136


>gi|54295371|ref|YP_127786.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
 gi|53755203|emb|CAH16696.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
          Length = 143

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +   C L SVL +A  AF  
Sbjct: 60  HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|212709958|ref|ZP_03318086.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
           30120]
 gi|212687367|gb|EEB46895.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
           30120]
          Length = 142

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       I+Q+ E   +S   + KI+  L   G V+  RG+
Sbjct: 4   QLTSFTDYGLRALIYLAALEKGQMTSITQVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA+ I I DVV+A E    +  C       C +  +C L   L+KA+  F  
Sbjct: 64  NGGIALGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGALQKAIQQFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QY++  +V++ S + ++ 
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140


>gi|110800338|ref|YP_696471.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
 gi|169343592|ref|ZP_02864591.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
 gi|182625647|ref|ZP_02953416.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
 gi|110674985|gb|ABG83972.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
 gi|169298152|gb|EDS80242.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
 gi|177909049|gb|EDT71524.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
          Length = 153

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH    P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    +++C     + C  V  C    + +K   +  
Sbjct: 61  AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +V    +++ +V +  ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138


>gi|291559054|emb|CBL37854.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SSC/2]
          Length = 152

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A++  D P  IS IAE   IS  +L ++L  L KAGI++++RG
Sbjct: 1   MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L +    I+  D+++  E      +C  F      C     C   +V ++  ++
Sbjct: 61  AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWQRINDS 120

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
               +   +++ L+     I 
Sbjct: 121 VQQAVDSITLQELMEESIEIH 141


>gi|54298536|ref|YP_124905.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
 gi|148360004|ref|YP_001251211.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
 gi|296108175|ref|YP_003619876.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53752321|emb|CAH13753.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
 gi|148281777|gb|ABQ55865.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
 gi|295650077|gb|ADG25924.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
           Alcoy]
          Length = 143

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +  +C L SVL +A  AF  
Sbjct: 60  NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSVLL 140


>gi|126698875|ref|YP_001087772.1| transcriptional regulator [Clostridium difficile 630]
 gi|254974823|ref|ZP_05271295.1| transcriptional regulator [Clostridium difficile QCD-66c26]
 gi|255092211|ref|ZP_05321689.1| transcriptional regulator [Clostridium difficile CIP 107932]
 gi|255100296|ref|ZP_05329273.1| transcriptional regulator [Clostridium difficile QCD-63q42]
 gi|255306235|ref|ZP_05350407.1| transcriptional regulator [Clostridium difficile ATCC 43255]
 gi|255313950|ref|ZP_05355533.1| transcriptional regulator [Clostridium difficile QCD-76w55]
 gi|255516630|ref|ZP_05384306.1| transcriptional regulator [Clostridium difficile QCD-97b34]
 gi|255649729|ref|ZP_05396631.1| transcriptional regulator [Clostridium difficile QCD-37x79]
 gi|255655290|ref|ZP_05400699.1| transcriptional regulator [Clostridium difficile QCD-23m63]
 gi|260682885|ref|YP_003214170.1| RRF2 family transcriptional regulator [Clostridium difficile CD196]
 gi|260686483|ref|YP_003217616.1| RRF2 family transcriptional regulator [Clostridium difficile
           R20291]
 gi|296451274|ref|ZP_06893014.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296880374|ref|ZP_06904337.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
 gi|306519839|ref|ZP_07406186.1| RRF2-family transcriptional regulator [Clostridium difficile
           QCD-32g58]
 gi|115250312|emb|CAJ68134.1| Transcriptional regulator, Rrf2 family (Transcriptional regulator
           of cysteine biosynthesis) [Clostridium difficile]
 gi|260209048|emb|CBA62167.1| RRF2-family transcriptional regulator [Clostridium difficile CD196]
 gi|260212499|emb|CBE03426.1| RRF2-family transcriptional regulator [Clostridium difficile
           R20291]
 gi|296259880|gb|EFH06735.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296428615|gb|EFH14499.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
          Length = 148

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A++ D  P  +  IA+   IS+ +L +I   L K+G+V++VRG
Sbjct: 1   MKLSTKGRYGLKAMFELALNQDNGPVSLKFIAKKQKISDQYLEQIFSSLKKSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + A+ IT+ D++   E    +++C     + C     C    V  K      
Sbjct: 61  AQGGYLLSKNAEDITVGDILVVLEGPVALSDCVLDEDV-CENSNMCVTKIVWEKMKKGIE 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
           DV+   +++ ++ + +  K
Sbjct: 120 DVIDSITLKDMINDYNKNK 138


>gi|188535079|ref|YP_001908876.1| transcriptional repressor NsrR [Erwinia tasmaniensis Et1/99]
 gi|188030121|emb|CAO98007.1| Putative negative regulator [Erwinia tasmaniensis Et1/99]
          Length = 141

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L +AG V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPAGRMTSISEVTEIYGVSRHHMVKIINQLSRAGYVSALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I  VV+  E    +  C +     C +  +C L + L +A+ +F 
Sbjct: 61  KNGGILLGKPAAEIVIGQVVRTLE-PLQLVNCSSEF---CHITAACRLKTALHEAVQSFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++  LV +   + KI 
Sbjct: 117 RELDQYTLADLVEDNHPLYKIL 138


>gi|291327130|ref|ZP_06127096.2| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
 gi|291311664|gb|EFE52117.1| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
          Length = 142

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G ++  RG+
Sbjct: 4   QLTSFTDYGLRALIYLASLGEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYIKATRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA+ I I DVV+A E    +  C       C +  +C L  VL +A+  F  
Sbjct: 64  NGGITLGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QY++  +V++ S + ++ 
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140


>gi|225026850|ref|ZP_03716042.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
 gi|224955857|gb|EEG37066.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
          Length = 152

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++  A+++    P R+  IA+   +S  +L +I+  L KAG + ++R
Sbjct: 7   MRISTKGRYALRLMLDIAMNDAEGKPVRVKDIAKRQEVSGKYLEQIVSVLTKAGYLRSIR 66

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +  D+ T+  +++ TE S     C       C  +  C    + RK   A 
Sbjct: 67  GPQGGYLLTKRPDEYTVGMILRITEGSMEPVPCLEEGSEVCERMEECITIPLWRKLSEAI 126

Query: 119 FDVLTQYSIECLVR 132
             VL   +++ L+ 
Sbjct: 127 SGVLDHTTLDDLIE 140


>gi|148260795|ref|YP_001234922.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
           JF-5]
 gi|146402476|gb|ABQ31003.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
           JF-5]
          Length = 150

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT  TDYG+R L++ A+  +    I++IA +  IS+  L K++  L +AG+VET+RGR
Sbjct: 1   MHLTMFTDYGLRTLIFLALRPERQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA  I + +V++A E    +  C    +  C + G C L +V+ +A +AF  
Sbjct: 61  HGGMRLARPAANIGLGEVIRAMEPGLALVPCQEGGR--CAIGGCCDLQAVMNEARDAFLG 118

Query: 121 VLTQYSIECLVR--NRSSIKKI 140
           V  +Y++  +V   N   ++++
Sbjct: 119 VFDRYTLADVVSPGNPRLMRRL 140


>gi|220934620|ref|YP_002513519.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995930|gb|ACL72532.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 143

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y A++ D  +RI+ IAEA  IS   L K++  L   G + T RG+
Sbjct: 1   MQLTRHTDYALRVLIYLAVNPDRLSRITDIAEAYDISRHHLVKVVHELAGHGHILTYRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I I DVV+  EE+  +  C A     C ++  C L  VL  A +AF  
Sbjct: 61  HGGMRLARPPAEIRIGDVVRDMEENLEIINCSA---PMCIILPDCRLKGVLNDARDAFMA 117

Query: 121 VLTQYSIECLVRNRSS 136
            L + ++  LV  +  
Sbjct: 118 TLDRVTLAELVVKKEK 133


>gi|163850401|ref|YP_001638444.1| rrf2 family transcriptional regulator [Methylobacterium extorquens
           PA1]
 gi|218528961|ref|YP_002419777.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Methylobacterium chloromethanicum CM4]
 gi|240137477|ref|YP_002961948.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254559655|ref|YP_003066750.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|163662006|gb|ABY29373.1| transcriptional regulator, Rrf2 family [Methylobacterium extorquens
           PA1]
 gi|218521264|gb|ACK81849.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           chloromethanicum CM4]
 gi|240007445|gb|ACS38671.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254266933|emb|CAX22732.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           DM4]
          Length = 157

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G+++T+RGR
Sbjct: 1   MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TE+   + ECF++    C +   C L   L +AL AF  
Sbjct: 61  GGGLRLAKPPAEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
           VL +Y++  L+       I ++  
Sbjct: 119 VLDRYTLADLLGGAEGDEIARLLG 142


>gi|172060807|ref|YP_001808459.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993324|gb|ACB64243.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
          Length = 172

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145


>gi|158522270|ref|YP_001530140.1| BadM/Rrf2 family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158511096|gb|ABW68063.1| transcriptional regulator, BadM/Rrf2 family [Desulfococcus
           oleovorans Hxd3]
          Length = 154

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ YG R+++  A++  + P R+S++++   IS  +L K+++ + +AG+VE+ RG
Sbjct: 1   MRLTTKSRYGTRLILDLALYGKEEPVRLSEVSKRQGISLKYLEKLIRRMRRAGLVESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
             GG +L +  + I++ D+V+  E    + +C     +   C   G C    +  +   A
Sbjct: 61  PYGGYKLAKAPEDISVGDIVRVMEGGTSITDCSERESVCGVCNRAGECLSRHIWVETSKA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
            F+ L ++ I  L+ N ++I K
Sbjct: 121 MFNALDEFRIGDLIENSTTILK 142


>gi|209519545|ref|ZP_03268338.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
 gi|209500024|gb|EEA00087.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
          Length = 176

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYALRVLLYLAVRGEGLSTIHDISQAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ DVV+ATE  F +  C    +     C +   C L   L+ A  A
Sbjct: 61  NGGLRLGAQSPALTVGDVVRATESDFALVGCLPDRQGVQRHCVITTQCRLRGALQAANQA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
           F   L +++I  + +  S +  +   G
Sbjct: 121 FLAELDRHTIGEVAQPHSPLAALLGLG 147


>gi|114328337|ref|YP_745494.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316511|gb|ABI62571.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 141

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ TDY IRV++Y +++ D   +I++IA    IS   L K++Q LV AG+V +VRGR
Sbjct: 1   MKFTRYTDYAIRVMIYLSVNQDRVVQIAEIARVYDISHNHLMKVVQGLVSAGLVSSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQIT+ ++V+ TE+ F + EC      DC     C   S+L +A  AF  
Sbjct: 61  SGGLLLGRPADQITVGELVRRTEDGFHLVEC-----ADCAARPGCQAPSILAEATKAFLA 115

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  +VR++S     FN
Sbjct: 116 VLDRYTLSDVVRDKSIAHAAFN 137


>gi|167587014|ref|ZP_02379402.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           ubonensis Bu]
          Length = 165

 Score =  165 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL   + ++T+  VV+ TE  F +  CFA  +    C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPHSTRLTVGQVVRETENDFALVGCFAGGESQRACVIEPHCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  L +  S +  +  
Sbjct: 121 FAELDRHTLGELAQPASPLAALLG 144


>gi|238922731|ref|YP_002936244.1| hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
 gi|238874403|gb|ACR74110.1| Hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
 gi|291526518|emb|CBK92105.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           DSM 17629]
 gi|291527007|emb|CBK92593.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           M104/1]
          Length = 144

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++M  A +N   P  +  +A+   IS+ +L +I+  L KAG V +VRG
Sbjct: 1   MKISTKGRYALRLMMDLAENNTGSPISLKDVAKRQDISDKYLEQIISILNKAGYVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L       T+  +++ TE S     C    +I C     C  + V +K  +A  
Sbjct: 61  AQGGYMLKMEPQNYTVGMILRQTEGSLAPVACIEDDEIVCDRQQQCVTSIVYKKINDAIS 120

Query: 120 DVLTQYSIECLVRNRSS 136
            V+   +++ LV  ++ 
Sbjct: 121 GVVDNITLQDLVDWQNE 137


>gi|282600062|ref|ZP_05972854.2| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
 gi|282566903|gb|EFB72438.1| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
          Length = 142

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L   G ++ VRG+
Sbjct: 4   QLTSFTDYGLRALIYLAALEKGKMTSITEVTDVYGVSRNHMVKIINQLSHLGYIKAVRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +PA+ I I DVV+A E    +  C       C +  +C L   L KA+  F  
Sbjct: 64  NGGISLGQPAESIRIGDVVRALE-PLTLVNCSGEF---CHITPACRLKGALNKAIQQFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QY++  +V++ S + ++ 
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140


>gi|239946889|ref|ZP_04698642.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921165|gb|EER21189.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 142

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERICSVKEISEYYNISLNHLVKVIHRLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|254510320|ref|ZP_05122387.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
 gi|221534031|gb|EEE37019.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
          Length = 148

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 78/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  +RVLMYCA H D     ++IAE C ISE  L +++  L +   + T RGR
Sbjct: 1   MRITKRTNIAVRVLMYCAAHPDRLVTKAEIAEVCNISENHLAQVINQLSQLDYLSTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R ADQI I  V +  E +  +AECFA     CPL  +C L   L+ A   F+ 
Sbjct: 61  NGGTVLARAADQIRIGSVFRHVEGALPIAECFADADNTCPLTDACRLRLALQDAAEVFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   +++ L+ +  ++ +I  
Sbjct: 121 SLDDITLDALICDNDNLLRILQ 142


>gi|126176517|ref|YP_001052666.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS155]
 gi|152998594|ref|YP_001364275.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS185]
 gi|160873169|ref|YP_001552485.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS195]
 gi|217971259|ref|YP_002356010.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS223]
 gi|304412444|ref|ZP_07394051.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|307305788|ref|ZP_07585534.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
 gi|125999722|gb|ABN63797.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS155]
 gi|151363212|gb|ABS06212.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS185]
 gi|160858691|gb|ABX47225.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS195]
 gi|217496394|gb|ACK44587.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS223]
 gi|304349279|gb|EFM13690.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|306911281|gb|EFN41707.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
 gi|315265394|gb|ADT92247.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS678]
          Length = 151

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S    +C    K  C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPASEINLGQLVRVLENSLAPIDCS---KPYCRFTPACKLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QY++  +V NR  +  + 
Sbjct: 118 LNVLDQYTLLDIVSNRDELLALL 140


>gi|94498334|ref|ZP_01304893.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
 gi|94422214|gb|EAT07256.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
          Length = 141

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL+Y          I+ IA A  IS+  L K++  LV AG +E+VRGR
Sbjct: 1   MRLTRYTDYAMRVLLYLGRQPGELASIAVIARAFAISQNHLMKVVNDLVNAGYLESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP  +I +  +V+ TE+ F +  C A     C +  +CGLTSVL +AL AF  
Sbjct: 61  NGGIRLARPPHEINVGALVRQTEDDFDLVGCGA-----CVIAPACGLTSVLDEALLAFLK 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL  YS+  ++  +     + 
Sbjct: 116 VLDGYSLADVLARKGDFSHLL 136


>gi|220934658|ref|YP_002513557.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995968|gb|ACL72570.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 158

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  AIH+   P  ++ I++   IS  +L ++   L K G+VE VRG
Sbjct: 1   MKLSTKGRYAVTAMMDLAIHDRIGPVTLADISQCQGISLSYLEQLFAKLRKHGLVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PAD+IT+ +++ A +E+  V  C  +   DC     C    + +      +
Sbjct: 61  PGGGYRLAKPADRITVANIITAVDENVDVTRCQGNE--DCQQGDRCLTHELWKDLSQQLY 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++     NR  ++ +
Sbjct: 119 GFLDGITLAQFA-NRPEVQAV 138


>gi|307243658|ref|ZP_07525799.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492968|gb|EFM64980.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
           DSM 17678]
          Length = 154

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A+  + + P  +  IA    IS+ +L +I   L KAG+V++VR
Sbjct: 1   MKLSTKGKYGLKAMFELAVSGNENEPVPLKYIANRQEISDQYLEQIFSALKKAGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +PA +IT+ D+++  E      EC       C    SC    V  +   A 
Sbjct: 61  GAQGGYFLSKPASEITVADILRVLEGDMAFTECLLDEDA-CKNFDSCSTRYVWARIKQAI 119

Query: 119 FDVLTQYSIECLVRNRSS 136
            DV    S++ +  + +S
Sbjct: 120 EDVTMSISLQDMADDYNS 137


>gi|115351837|ref|YP_773676.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170703406|ref|ZP_02894182.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|115281825|gb|ABI87342.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
 gi|170131682|gb|EDT00234.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
          Length = 172

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++   +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLATLLG 145


>gi|170692319|ref|ZP_02883482.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
 gi|170142749|gb|EDT10914.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
          Length = 169

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y AI  +  + I  I++A  +S+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAIRGEGLSTIQDISDAYGVSKNHLMKVVQQLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL     ++T+ ++V+ATE  F +  C          C +   C L +VL  A NA
Sbjct: 61  NGGLRLAERTRKLTVGEIVRATESDFALVACLPDQNGERRPCVITPQCRLRNVLEAARNA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I+ +   +  +  +  
Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145


>gi|126665836|ref|ZP_01736817.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
 gi|126629770|gb|EBA00387.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
          Length = 145

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y A   D    I  +A+A  IS+  L K++  L   G +ETVRG+
Sbjct: 1   MHITRYTDYSLRVLVYLAACGDRLVTIQDVADAYDISKNHLMKVVHQLNLKGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I I  +V+ TE    + ECF+++   C +   C L S+LR+AL AF  
Sbjct: 61  NGGMRLRRQPSSINIGALVRDTEPDLNLVECFSANN-QCCITPVCSLQSMLREALQAFLA 119

Query: 121 VLTQYSIECLVR 132
            L  Y++  +VR
Sbjct: 120 TLDTYTLADVVR 131


>gi|167765593|ref|ZP_02437657.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
 gi|317498547|ref|ZP_07956841.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712778|gb|EDS23357.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
 gi|316894240|gb|EFV16428.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 149

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A++  D P  IS IAE   IS  +L ++L  L KAGI++++RG
Sbjct: 1   MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L +    I+  D+++  E      +C  F      C     C   +V ++  ++
Sbjct: 61  AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWKRINDS 120

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
               +   +++ L+     I 
Sbjct: 121 VQQAVDSITLQELMEESIEIH 141


>gi|167825083|ref|ZP_02456554.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
 gi|217420382|ref|ZP_03451887.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|226199936|ref|ZP_03795486.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|217395794|gb|EEC35811.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|225927992|gb|EEH24029.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 162

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|307611397|emb|CBX01061.1| hypothetical protein LPW_27621 [Legionella pneumophila 130b]
          Length = 143

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y A+       I  I +A  IS   L KI+  L K G+++T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYTISNNHLIKIIHNLSKMGLIKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E +F +  CF   K +C +   C L SVL +A  AF  
Sbjct: 60  HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           +L QY++  ++ N S +  + 
Sbjct: 120 ILEQYTLADVLHNPSELSALL 140


>gi|53725252|ref|YP_102394.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|52428675|gb|AAU49268.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
          Length = 165

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 4   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 64  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 124 ELDGATLADLV 134


>gi|187923802|ref|YP_001895444.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Burkholderia phytofirmans PsJN]
 gi|187714996|gb|ACD16220.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           phytofirmans PsJN]
          Length = 166

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+     + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGGGLSTIQDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL    + +T+ ++V+ATE  F +  CF     +   C +   C L   L  A NA
Sbjct: 61  NGGLRLAEQTNALTVGEIVRATESDFALVGCFPDQHGERRGCVITAQCRLRGALEAARNA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I  + +    +  +  
Sbjct: 121 FLTELDRHTIGEVAQPHGPLAALLG 145


>gi|326403994|ref|YP_004284076.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050856|dbj|BAJ81194.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 150

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT  TDYG+R L++ A+  D    I++IA +  IS+  L K++  L +AG+VET+RGR
Sbjct: 1   MHLTMFTDYGLRTLIFLALRPDRQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA  I + +V++A E    +  C    +  C + G C L +V+ +A +AF  
Sbjct: 61  HGGMRLARPAANIGLGEVIRAMEPGLALVACQEGGR--CAIGGCCDLQAVMNEARDAFLG 118

Query: 121 VLTQYSIECLV 131
           V  +Y++  +V
Sbjct: 119 VFDRYTLADVV 129


>gi|253991548|ref|YP_003042904.1| transcriptional repressor NsrR [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638426|emb|CAR67048.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782998|emb|CAQ86163.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 141

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L   G+V+ VRG
Sbjct: 1   MQLTSFTDYGLRALIYMAALPQSQMTSISEVTDVYGVSRNHMVKIINQLSHLGLVDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    +  C       C +  +C L  VL +A   F 
Sbjct: 61  KNGGIRLGKPAKDIRIGDVVRALE-PLSLVNCSQE---SCHITSACRLKVVLNQAAEKFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  +V +   + K+ 
Sbjct: 117 EELDKHTLADMVEDNIPLYKLL 138


>gi|67641803|ref|ZP_00440570.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|121599140|ref|YP_993712.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|167001110|ref|ZP_02266911.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|167895170|ref|ZP_02482572.1| Rrf2 family protein [Burkholderia pseudomallei 7894]
 gi|167919806|ref|ZP_02506897.1| Rrf2 family protein [Burkholderia pseudomallei BCC215]
 gi|254178664|ref|ZP_04885319.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|254199293|ref|ZP_04905659.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|254205604|ref|ZP_04911956.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|254296933|ref|ZP_04964386.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|121227950|gb|ABM50468.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|147748889|gb|EDK55963.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|147753047|gb|EDK60112.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|157807290|gb|EDO84460.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|160699703|gb|EDP89673.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|238522791|gb|EEP86233.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|243063060|gb|EES45246.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
          Length = 162

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|170729199|ref|YP_001763225.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814546|gb|ACA89130.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC
           51908]
          Length = 152

 Score =  165 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L K G +ETVR
Sbjct: 1   MQLTRYTDFGIRTLMYLALQPERETLFRIAEITEVFELSPNHVSKIVHHLGKLGYLETVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL  PA +I I  +V+  E S    +C   +K  C    +C L  VL +A++A+
Sbjct: 61  GKSGGFRLGMPASEINIGQLVRVLENSLAPIDC---NKPYCLFTPACKLRGVLAEAVSAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL ++S+E +V NR  + K+ 
Sbjct: 118 LAVLDKHSLEDVVSNRQQLLKLL 140


>gi|153852839|ref|ZP_01994276.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
 gi|149754481|gb|EDM64412.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
          Length = 144

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A + N    R+  I+    I+  ++ +I+  L KAG V + RG
Sbjct: 1   MKISTKGRYALRIMIDLAENANGEYIRLKDISARQGITLKYMEQIMPMLTKAGYVRSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  ++ T  D+++ TE S     C       C     C              
Sbjct: 61  NNGGYMLAKEPEEYTAGDIIRTTEGSLAPIACLDDVPNRCERQDQCSTLEFWEGLKKVID 120

Query: 120 DVLTQYSIECLVRNRSS 136
             +   ++  LV+N   
Sbjct: 121 QYVDGVTLADLVKNHEE 137


>gi|167837274|ref|ZP_02464157.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 161

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 77/131 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCAANPDRLITIAELAERHAVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P  +I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLAMPPARIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|153953942|ref|YP_001394707.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854556|ref|YP_002471678.1| hypothetical protein CKR_1213 [Clostridium kluyveri NBRC 12016]
 gi|146346823|gb|EDK33359.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568280|dbj|BAH06264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 148

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH  D P  I  I+E   ISE +L ++   L K+ ++ ++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYGDEPLSIKTISERQGISEYYLEQLFSNLRKSNLIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L R    IT+ D++   E    +++C   +    C  +  C    +  +  +  
Sbjct: 61  SQGGYILNREPKNITVWDIMGVLEGPIEISDCVDDNNESSCDNIDCCATRLLWSRIKDGI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            +++   +++ +V + +S+K+
Sbjct: 121 DEIMKSTTLQDMVDDYNSMKQ 141


>gi|307729564|ref|YP_003906788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1003]
 gi|307584099|gb|ADN57497.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1003]
          Length = 169

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+     + I  I+EA  +S+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGQGLSTIQDISEAYGVSKNHLMKVVQQLSELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  C      +   C +   C L +VL  A +A
Sbjct: 61  NGGLRLAERTRSLTVGEIVRATESDFALVACLPDQNGERRACVITPQCRLRNVLEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I+ +   +  +  +  
Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145


>gi|166033539|ref|ZP_02236368.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
           27755]
 gi|166026724|gb|EDR45481.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
           27755]
          Length = 145

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A HN     R+  I++   I+  ++ +I+  L K+G V++ RG
Sbjct: 1   MKVSTKGRYALRIMIDLAEHNTGGYIRLKDISKRQGITLKYMEQIMPILTKSGYVKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  ++ T  ++++A E S     C       C     C          +   
Sbjct: 61  NNGGYMLAKKPEEYTAGEILRAAEGSLAPVSCIEDEPNACGHYEQCRTVKFWEGLWDVII 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
           +   ++++  L++N      I   G
Sbjct: 121 EYTDRFTLADLMKNEDIENPICKEG 145


>gi|301155741|emb|CBW15209.1| DNA-binding transcriptional repressor [Haemophilus parainfluenzae
           T3T1]
          Length = 151

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHAGTDPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL  P DQI+I  V+ A  E+  V  C    K +C     C   S+ +   +   
Sbjct: 61  PGGGYRLALPTDQISIGMVISAVNENINVTRCLG--KGNCQGGVECLTHSLWQDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV  +S   K
Sbjct: 119 DFLDEITLAELVEKKSGKHK 138


>gi|71908531|ref|YP_286118.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71848152|gb|AAZ47648.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
           aromatica RCB]
          Length = 159

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +RVLMY     D    I++IA A  IS+  L K+   L + G +ETVRG+
Sbjct: 1   MRLSAFSDYSLRVLMYLGAQTDRLATIAEIAAAHDISKSHLMKVAYQLGRGGYIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     +I + +V++ TE  F +AECFA  K  C + G+C L ++L +AL A F 
Sbjct: 61  GGGLRLAHEPQEIVVGEVIRQTESDFTLAECFAD-KSTCRIQGACCLPAILNEALKAMFL 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL  Y++  L+R    +  +  
Sbjct: 120 VLDGYTLADLLRTPGKLMPLAG 141


>gi|53719983|ref|YP_108969.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76809787|ref|YP_334214.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|126442125|ref|YP_001059734.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126454292|ref|YP_001067019.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277895|ref|ZP_01764610.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|167720485|ref|ZP_02403721.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
 gi|167739474|ref|ZP_02412248.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167816678|ref|ZP_02448358.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167846586|ref|ZP_02472094.1| putative transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|167903554|ref|ZP_02490759.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911804|ref|ZP_02498895.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|237813128|ref|YP_002897579.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|242315306|ref|ZP_04814322.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254184271|ref|ZP_04890861.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|254191305|ref|ZP_04897809.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195724|ref|ZP_04902150.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254261403|ref|ZP_04952457.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
 gi|52210397|emb|CAH36378.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76579240|gb|ABA48715.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|126221618|gb|ABN85124.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126227934|gb|ABN91474.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134251545|gb|EBA51624.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|157938977|gb|EDO94647.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169652469|gb|EDS85162.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|184214802|gb|EDU11845.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|237506106|gb|ACQ98424.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|242138545|gb|EES24947.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254220092|gb|EET09476.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
          Length = 162

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|330445010|ref|ZP_08308664.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493128|dbj|GAA03161.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 143

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G VETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELASITKVTETYNVSRNHMVKIINKLGQLGYVETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  PA  I + DVV+A E    +  C A     C +  +C L  +L  A  AF 
Sbjct: 61  KNGGIRLGMPASTIIVGDVVRAIE-PLQIVNCSADF---CHITPACRLKGILANAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L  +++  LV + + +  + N+
Sbjct: 117 AELDNHTLLSLVEDNAPLLDLLNS 140


>gi|253698991|ref|YP_003020180.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251773841|gb|ACT16422.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 152

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  D+IT+  VV+ATE    + +C    K +C   GSC   +V  ++ N   
Sbjct: 61  PQGGYCLAKSPDEITVRAVVEATEGDTLIVDCAGRKKGECSFDGSCVTQTVWEESNNRLN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +     +++ L     ++
Sbjct: 121 EFFESITLKTLCDRGETL 138


>gi|110802830|ref|YP_699071.1| hypothetical protein CPR_1756 [Clostridium perfringens SM101]
 gi|110683331|gb|ABG86701.1| rrf2 family protein [Clostridium perfringens SM101]
          Length = 153

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI+    P  I  I++   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    +++C     + C  V  C    + +K   +  
Sbjct: 61  AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +V    +++ +V +  ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138


>gi|313895892|ref|ZP_07829446.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320530715|ref|ZP_08031759.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|312975317|gb|EFR40778.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320137002|gb|EFW28940.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 147

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+H  +    I  IA++  ISE +L +++ PL +AG+VE+VRG
Sbjct: 1   MKLSTKGRYSVTALYELALHYGEGVVPIKTIAKSQGISENYLEQLMLPLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L RP  ++TI +++ A E    + +C      +    C   G+C    +  +  
Sbjct: 61  AQGGYTLSRPPAEVTIGEIITAVEGPIALVDCLLTDVDAGDQSCVHAGACATRQIWEEVC 120

Query: 116 NAFFDVLTQYSIECLVR 132
            A   VL   S+  L+R
Sbjct: 121 AAINSVLNNISLAHLLR 137


>gi|238750360|ref|ZP_04611861.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
           43380]
 gi|238711291|gb|EEQ03508.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
           43380]
          Length = 185

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 82  PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158


>gi|331269734|ref|YP_004396226.1| BadM/Rrf2 family transcriptional regulator [Clostridium botulinum
           BKT015925]
 gi|329126284|gb|AEB76229.1| transcriptional regulator, BadM/Rrf2 family [Clostridium botulinum
           BKT015925]
          Length = 144

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI+  + P  I  IA    ISEL+L ++  PL KA ++++VRG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYGESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ D++   E    ++ C  S +  C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLNKHPKEISVSDIIDVLEGPIEISSCIDSGE--CNNMEVCPTRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +  +   +K
Sbjct: 119 EVTQSITLQDMANDYKRLK 137


>gi|308048583|ref|YP_003912149.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
           DSM 9799]
 gi|307630773|gb|ADN75075.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
           DSM 9799]
          Length = 144

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D+  R L+Y   +  +    IS++ E   +S   + K++  L  AG V TVRG
Sbjct: 1   MQLTSFSDFAFRALIYLGTLPKEELTSISRVTEVYGVSRNHMVKVINKLGHAGFVTTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG+RL +   +I + DVV+A E    + +C +     C +V +C L  VL +A NAF 
Sbjct: 61  KKGGIRLAKAPAEIGLGDVVRALE-PLKLVDCGSPF---CHIVPACRLKGVLEEATNAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L QY++  ++ N   +  +  
Sbjct: 117 AALDQYTLADMLSNNPHLVTLLQ 139


>gi|255067242|ref|ZP_05319097.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
 gi|255048610|gb|EET44074.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
          Length = 154

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAEA  IS+  L K++  LVK G + ++RG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAINDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D+I +  VV+  E    V EC      +C +  SC LT +L  A+ AFF 
Sbjct: 61  GGGLRLADTPDKINVGAVVRHLE-PMQVVECMG-ENNECLITPSCRLTGILGGAIKAFFA 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 HLDGFTLQDLLNKPT 133


>gi|310658799|ref|YP_003936520.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM
           519]
 gi|308825577|emb|CBH21615.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
          Length = 148

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A+  +   P  +  IA+   +SE +L +I   L K+G+V++VR
Sbjct: 1   MKLSTKGRYGLKAIFELALKEEENLPLSLKYIADKNGLSEQYLEQIFAILKKSGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +P+ QIT+  V++A E     ++C      DC     C    V ++  ++ 
Sbjct: 61  GAQGGYYLSKPSSQITVGQVLRALEGPMAPSDCVLEEDADCENSDFCVTKVVWQRIKDSV 120

Query: 119 FDVLTQYSIECLVRNRS 135
             V+   +++ +V +  
Sbjct: 121 DSVIDSVTLKDMVLDHK 137


>gi|163797341|ref|ZP_02191294.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
 gi|159177432|gb|EDP61988.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
          Length = 158

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +R L+  A++      I +IA    IS+  L K++  L +  I+ + RG+
Sbjct: 1   MQLSQFTDYALRTLILVALNGSRRTTIDEIATRYGISKEHLRKVVHLLSRLSILHSTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL  PA  I I D+V+ATE  F +AEC  A     CP+ G C L+ +LR A  AF 
Sbjct: 61  GGGLRLNIPAKAIRIGDIVRATEGGFAMAECLRADRAGHCPIDGVCRLSGILRGATAAFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L ++++  L+ +R S+ +  
Sbjct: 121 TELDRHTLADLIADRDSLLQRL 142


>gi|197116760|ref|YP_002137187.1| BadM/Rrf2 family transcriptional regulator [Geobacter bemidjiensis
           Bem]
 gi|197086120|gb|ACH37391.1| transcriptional regulator, BadM/Rrf2 family [Geobacter bemidjiensis
           Bem]
          Length = 152

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  ++IT+  V++ATE    + +C +  K +C   GSC   +V  ++ N   
Sbjct: 61  PQGGYCLAKSPEEITVRAVIEATEGDTLIVDCASRKKGECNFDGSCVTQTVWEESNNRLN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +     +++ L     ++
Sbjct: 121 EFFESITLKTLCDRGETL 138


>gi|317049750|ref|YP_004117398.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951367|gb|ADU70842.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 147

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A   +     I+++ +   +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYMATLPEGTQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    ++I I DVV+  E    +  C      +C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMDPEKIVIGDVVRKME-PLQLVNC-----NECSITPACRLRKALNDAVQLFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV+   S+ +I 
Sbjct: 115 RELDNYTLADLVKGNDSLYQIL 136


>gi|225375164|ref|ZP_03752385.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
           16841]
 gi|225212990|gb|EEG95344.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
           16841]
          Length = 163

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++N   P  +  IA    IS+ +L +I+  L KA  V+++RG
Sbjct: 21  MKVSTKGRYALRLMLDLAVNNTGEPISLKDIARRQGISDKYLEQIISVLNKAKYVKSIRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  ++ TI  +++ TE S     C       C  +  C    V +K   A  
Sbjct: 81  AQGGYILTKKPEEYTIGMILRLTEGSLAPVACVEEENT-CEKIHDCATILVWQKMNEAIN 139

Query: 120 DVLTQYSIECLVR 132
           DV+   +++ LV 
Sbjct: 140 DVVDHMTLQDLVD 152


>gi|37528395|ref|NP_931740.1| transcriptional repressor NsrR [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418099|sp|Q7MYU4|NSRR_PHOLL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|36787833|emb|CAE16948.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 141

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ +   +S   + KI+  L   G+V+ VRG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPQSRMTSISEVTDIYGVSRNHMVKIINQLSHLGLVDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA  I I DVV+A E    +  C       C +  +C L  VL +A+  F 
Sbjct: 61  KNGGIRLGKPAKDIRIGDVVRALE-PLSLVNCSQE---SCHITSACRLKVVLNQAIERFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           + L ++++  ++ +   + K+ 
Sbjct: 117 EELDKHTLADMIEDNIPLYKLL 138


>gi|238022039|ref|ZP_04602465.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
 gi|237866653|gb|EEP67695.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
          Length = 152

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL+Y A+++     I  IAE   IS+  L K++  LVK G + ++RG+
Sbjct: 1   MYLTQQTDYALRVLIYAAVNDQSLVNIGTIAETYNISKSHLMKVVTALVKGGFLTSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +P ++I +  VV+ TE    +AECF  +   C +  +C L+ +L   L AF +
Sbjct: 61  GGGLKLAQPPEKIRVGTVVRVTE-PLQLAECFGDNN-QCLITPTCRLSQILNSGLIAFIN 118

Query: 121 VLTQYSIECLVRNRS 135
            L  Y++  LV   +
Sbjct: 119 HLDGYTLADLVNAPT 133


>gi|229586877|ref|YP_002845378.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
 gi|228021927|gb|ACP53635.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
          Length = 142

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|167563455|ref|ZP_02356371.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
 gi|167570625|ref|ZP_02363499.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
          Length = 161

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/131 (42%), Positives = 77/131 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHNVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P  +I I DV++A+E  F + ECF  H   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPGRIGIGDVIRASETDFRLVECFDRHTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|157377604|ref|YP_001476204.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319978|gb|ABV39076.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
           HAW-EB3]
          Length = 151

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY AI  D     RIS+I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGIRTLMYLAIQPDREELFRISEITEVFELSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL      I +  +V+  E S    +C    K  C    SC L  VL  A+ A+
Sbjct: 61  GKSGGFRLGMSPKDINVGKLVRVLENSLAPIDCS---KPYCRFTPSCQLKGVLADAVAAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             V+  Y++E +V N+  +K++ 
Sbjct: 118 LAVIDAYTLEDIVSNKDELKQLL 140


>gi|291166173|gb|EFE28219.1| Rrf2 family protein [Filifactor alocis ATCC 35896]
          Length = 147

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  YG++ +   A++ D   P  +  IA    +SE +L +I   L K+G+V +VR
Sbjct: 1   MKLSTKGRYGLKAMYDLAVYEDLHEPISLKAIASNNNLSEQYLEQIFSKLKKSGLVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R + +IT+ D+++  +     + C       C     C   +V +K  ++ 
Sbjct: 61  GAQGGYVLSRSSKEITVGDIIRVLDGPIAPSMCLLEEVGPCISGKDCPTRAVWKKIKDSV 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            DV+   ++  +V     IK
Sbjct: 121 DDVIDNITLYDMVIEHKLIK 140


>gi|52425782|ref|YP_088919.1| hypothetical protein MS1727 [Mannheimia succiniciproducens MBEL55E]
 gi|52307834|gb|AAU38334.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 150

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI+  D P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAINAEDGPVTLSDISERQNISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +P+ QI+I  ++ A  E+  V +C      +C     C    +  +  +   
Sbjct: 61  PGGGYQLGQPSGQISIGMIIAAVNENISVTKCLGQG--NCQGGKVCLTHHLWAELSDRIE 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L + ++E LV  + S K
Sbjct: 119 NFLNEITLEELVSKQHSQK 137


>gi|294143081|ref|YP_003559059.1| Rrf2 family protein [Shewanella violacea DSS12]
 gi|293329550|dbj|BAJ04281.1| Rrf2 family protein [Shewanella violacea DSS12]
          Length = 152

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  TD+GIR LMY AI  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTHYTDFGIRTLMYLAIQPDRETLFRIAEITQVFDLSPNHVSKIVHRLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +    I I  +V+  E S    +C    K  C L  SC L  VL +A+ A+
Sbjct: 61  GKSGGFRLGKSPQDINIGQLVRVLENSLAPIDCS---KPYCRLTPSCQLRGVLAEAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QYS+  +V N   + K+ 
Sbjct: 118 LTVLDQYSLADIVSNNRELIKLL 140


>gi|114705699|ref|ZP_01438602.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
 gi|114538545|gb|EAU41666.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
          Length = 149

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++T+Y IR+LMY A++ D  +R+ +IA+A    E F+FKIL PLV AG+VETVRGR
Sbjct: 1   MRLTRQTNYAIRILMYLAVNKDRLSRLGEIAKAYSAPEPFMFKILNPLVSAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A +I + +VV+ TEESF +AECF +   DCPL+ SC L + LR+AL AF  
Sbjct: 61  NGGIRLAREATRINLREVVELTEESFQMAECFETG-ADCPLIFSCELNAALRQALEAFLS 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L +YS+E L +N+  + +   
Sbjct: 120 TLGRYSLEDLTKNKGYLHRTLG 141


>gi|15892744|ref|NP_360458.1| hypothetical protein RC0821 [Rickettsia conorii str. Malish 7]
 gi|15619921|gb|AAL03359.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 142

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|322806906|emb|CBZ04476.1| iron-sulfur cluster regulator IscR [Clostridium botulinum H04402
           065]
          Length = 148

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI+    P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D+++  E    ++ C       C  +  C    +  K   +  
Sbjct: 61  AQGGYILNRHPEDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +++   +++ +V +   I 
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138


>gi|169333997|ref|ZP_02861190.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258714|gb|EDS72680.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
           17244]
          Length = 143

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A + D     + ++++   IS  +L +I   L K G + +VRG
Sbjct: 1   MKISTKGRYALRLMIDLAKNYDGKYITLKEVSKRQDISIKYLEQITTQLCKVGYLNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L +   + T  D+++ TE S     C  + +  C   GSC      +   N   
Sbjct: 61  PKGGYKLAKEPREYTAGDILRVTEGSLAPIACLEAEENACTRSGSCATLPFWKGLYNVIE 120

Query: 120 DVLTQYSIECLVRNRSS 136
           + +   ++E L+ +   
Sbjct: 121 NYVNNVTLEDLLDDEKD 137


>gi|157371863|ref|YP_001479852.1| DNA-binding transcriptional regulator IscR [Serratia proteamaculans
           568]
 gi|189044752|sp|A8GHY4|ISCR_SERP5 RecName: Full=HTH-type transcriptional regulator iscR
 gi|157323627|gb|ABV42724.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 164

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLAELVNNQDVL 136


>gi|303245724|ref|ZP_07332007.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302492987|gb|EFL52852.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 147

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A+H  D P RI  +A    +S  +L K+++ L +AG V + RG
Sbjct: 1   MKLTTRSRYGTRMILDMALHAVDGPVRIKDVAARQGVSIKYLEKLVRELKQAGFVRSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            RGG  L +P  +IT+  +V+A E    + EC        CP +  C    V  +A  A 
Sbjct: 61  PRGGHELAKPLSEITVGAIVRALEGDISLVECDGEGSGQSCPRLADCLTREVWAEAARAM 120

Query: 119 FDVLTQYSIECLVRNRSS 136
            + L   ++  LV    +
Sbjct: 121 HERLDAITLADLVAKADA 138


>gi|226356822|ref|YP_002786562.1| Rff2 family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226318812|gb|ACO46808.1| putative transcriptional regulator, Rff2 family [Deinococcus
           deserti VCD115]
          Length = 151

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+     +     +  ++E   IS+ +L +I   L +AG ++++RG 
Sbjct: 1   MWVSTKAQYGLRALIEIGRRDGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA  I+  DVV A E S     C       C     CG  ++  +   A  D
Sbjct: 61  HGGYRLSRPAADISAYDVVTAMEGSLAPVSCVEDDHT-CDHQNVCGTQNLWHRVDAALKD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   ++  L+     ++
Sbjct: 120 VLGSTTLADLIVESEQLQ 137


>gi|312143964|ref|YP_003995410.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
 gi|311904615|gb|ADQ15056.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
          Length = 150

 Score =  163 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A H +     I +I+E   ISE +L ++   L KA +V++VRG
Sbjct: 1   MKISTKGRYGLRALVDLAEHEEGKAIPIRKISERQDISEQYLEQLFATLRKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + I++ +++ A E      +C       C  V  C +  +  +  +A  
Sbjct: 61  AHGGYMLNHEPEDISVAEILTALEGPLVPVDCVVEENF-CNYVDRCVMHGLWEEMADAIN 119

Query: 120 DVLTQYSIECLVRN 133
           +++   ++  L+  
Sbjct: 120 EIIENTTLADLLER 133


>gi|295109801|emb|CBL23754.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
           A2-162]
          Length = 143

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A HN      +  IA+   ISE +L  I+  L K   V+ +RG
Sbjct: 1   MKISTRGRYALRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   + TI  +++ TE S     C   H   C    SC    +  +      
Sbjct: 61  KGGGYRLAKTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEEFYKLIN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +     ++E L+  +S +
Sbjct: 121 EYFDGITLEDLLEQKSDV 138


>gi|92118751|ref|YP_578480.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91801645|gb|ABE64020.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
           hamburgensis X14]
          Length = 142

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT   DY +R+LMY A H+D    I + A    IS   L K+   L +AG ++ VRGR
Sbjct: 1   MRLTSFFDYTLRLLMYAATHSDRLITIEETAGVYGISRTHLMKVANQLTRAGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  ++I + DV+ ATE  F + ECF+++   CP+  SC L + LR+AL AF  
Sbjct: 61  SGGLALAKRPNRIKLGDVLCATEPDFALVECFSANN-HCPISSSCRLRAPLREALAAFTA 119

Query: 121 VLTQYSIECLV 131
            L +Y++  L+
Sbjct: 120 TLDRYTLADLI 130


>gi|217968854|ref|YP_002354088.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217506181|gb|ACK53192.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 163

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +R+LMY     +    I ++AE   IS   L K++  LV  G V+  RG+
Sbjct: 1   MNITQHTDYALRLLMYLGTCTERRVTIKEVAERFDISRSHLMKVVTGLVAKGFVDGARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A QI + DVV+  E SF + ECF S    C L  +C L   L  AL AFF 
Sbjct: 61  GGGLRLARAATQIGLGDVVRGMEPSFELVECFGSGS-HCLLDPACRLKGALAGALQAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L + ++  L+ +   +  +  
Sbjct: 120 ALDRLTLADLIGDDGQLHAVLG 141


>gi|255528018|ref|ZP_05394855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296185461|ref|ZP_06853871.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
 gi|255508287|gb|EET84690.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296050295|gb|EFG89719.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
          Length = 151

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  + P+ I  IAE   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGQYGVKAMVDLAVHYGEGPSSIKSIAERQNISEYYLEQLFSPLRKANLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L R    +T+ ++++  E    +++C   H  + C  +  C    +  +   + 
Sbjct: 61  AQGGYVLEREPKDMTVFEIMEVLEGPVEISKCIDEHNENSCGNMDCCATRLLWSRIKESI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V+   ++E +V +   +K
Sbjct: 121 DSVMKATTLEDMVEDYKKMK 140


>gi|163761538|ref|ZP_02168610.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
           DFL-43]
 gi|162281252|gb|EDQ31551.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
           DFL-43]
          Length = 155

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +T+Y +R+LM+C    D   ++ +IA    + E FLF ILQ L   G++ET RGR
Sbjct: 1   MKLTSQTNYAVRMLMFCHSKGDR-AKVKEIAAFYGLPERFLFNILQRLTAVGLMETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+QI + DVV+  EE+F +AECF +   DCPL+ +CGL   L +AL +FFD
Sbjct: 60  GGGIRLARPAEQIMLGDVVRLVEENFEMAECFEAGGTDCPLINTCGLNKALSEALRSFFD 119

Query: 121 VLTQYSIECL 130
            L +YSI  L
Sbjct: 120 SLNRYSIADL 129


>gi|89072688|ref|ZP_01159253.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
 gi|89051508|gb|EAR56962.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
          Length = 183

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 13  MKLTSKGRYAVTAMLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I +  V+ A +ES    +C    K DC     C   ++     +   
Sbjct: 73  PGGGYRLGEEASDIAVGMVIAAVDESVDATKCHG--KGDCQGGARCLTHTLWHDLSDRIS 130

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+++  
Sbjct: 131 GFLNNITLGELMKDND 146


>gi|330831194|ref|YP_004394146.1| Rrf2 family protein [Aeromonas veronii B565]
 gi|328806330|gb|AEB51529.1| Rrf2 family protein [Aeromonas veronii B565]
          Length = 156

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 80/144 (55%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYGVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+R+      I I  V++A E +    +C       C +V  C L S L++A++AF 
Sbjct: 61  KNGGIRMACDPATINIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKSALKEAMDAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            V+  Y+++ L+ NR  ++++F  
Sbjct: 118 AVMDSYTLQDLLANRDELQRVFGE 141


>gi|50122160|ref|YP_051327.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           atrosepticum SCRI1043]
 gi|81644317|sp|Q6D258|ISCR_ERWCT RecName: Full=HTH-type transcriptional regulator iscR
 gi|49612686|emb|CAG76136.1| putative transcriptional regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 164

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGRE--SCQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   +++ LV N+  + 
Sbjct: 119 DFLNNITLDELVNNKEVLN 137


>gi|161524598|ref|YP_001579610.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189350646|ref|YP_001946274.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198118|ref|ZP_03571164.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
 gi|221208391|ref|ZP_03581394.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
 gi|221215143|ref|ZP_03588110.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
 gi|160342027|gb|ABX15113.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans ATCC 17616]
 gi|189334668|dbj|BAG43738.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165079|gb|EED97558.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
 gi|221171804|gb|EEE04248.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
 gi|221182050|gb|EEE14451.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
          Length = 161

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG+RL   + ++T+ +VV+ATE  F +  CF        C +   C L  VL  A +AF
Sbjct: 61  NGGLRLFPASLKLTVGEVVRATETDFALVGCFVAGDDTRGCVIEPQCRLKGVLAAARDAF 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  L     ++  +  
Sbjct: 121 FAELERHTLAELAEPAPALVSLLG 144


>gi|24371645|ref|NP_715687.1| Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|24345407|gb|AAN53132.1|AE015456_2 Rrf2 family protein [Shewanella oneidensis MR-1]
          Length = 151

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RIS+I E   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRISEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  ++++ E S    +C    K  C    +C L  VL +A+ A+
Sbjct: 61  GKMGGFRLGKPAGEINLGQLIRSLENSLAPIDCS---KPYCRFTPACQLKGVLAQAVEAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QYS+  +V NR+ +  + 
Sbjct: 118 LNVLDQYSLLDIVSNRNELLALL 140


>gi|186475702|ref|YP_001857172.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
 gi|184192161|gb|ACC70126.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
          Length = 175

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+ ++    I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 11  MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGR 70

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKAL 115
            GG+RL   +  +T+ +VV+ATE  F +  C      +    +C +   C L S+L  A 
Sbjct: 71  NGGLRLYEHSSSLTVGEVVRATESDFALVSCLNVADASGAHRECVIQSHCRLKSILESAR 130

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +AFF  L  Y+I  +    S +  +  
Sbjct: 131 DAFFRELDNYTIRDIAEPASPLISLLG 157


>gi|289208504|ref|YP_003460570.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288944135|gb|ADC71834.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 159

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  AIH+   P  ++ I++   IS  +L ++   L KA +VE VRG
Sbjct: 1   MKLSTKGRYAVTAMMDLAIHDRVGPVTLADISQCQGISLSYLEQLFAKLRKADLVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL + ADQI+I +++ A +ES  V  C      DC     C    +        +
Sbjct: 61  PGGGYRLAKRADQISIANIITAVDESVDVTRC--KGHKDCQDGERCLTHELWDDLSQQLY 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L   ++     NR  ++K+
Sbjct: 119 DFLDGITLAQFA-NRPEVQKV 138


>gi|325579030|ref|ZP_08148986.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159265|gb|EGC71399.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 151

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHAGTNPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   ADQI+I  V+ A  E+  V  C    K +C     C   S+ +   +   
Sbjct: 61  PGGGYRLALSADQISIGMVISAVNENIDVTRCLG--KGNCKGGVECLTHSLWQDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV  ++   K
Sbjct: 119 DFLDEITLAELVEKKTGKHK 138


>gi|261379265|ref|ZP_05983838.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
 gi|284797696|gb|EFC53043.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
          Length = 152

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    + I I  VV+  E    V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADNPENINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLVRNRS 135
            L QYS++ L+   +
Sbjct: 119 HLDQYSLQDLLDKPT 133


>gi|22125232|ref|NP_668655.1| DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10]
 gi|45442337|ref|NP_993876.1| DNA-binding transcriptional regulator IscR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|170023521|ref|YP_001720026.1| DNA-binding transcriptional regulator IscR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896270|ref|YP_001873382.1| DNA-binding transcriptional regulator IscR [Yersinia
           pseudotuberculosis PB1/+]
 gi|21958101|gb|AAM84906.1|AE013736_2 hypothetical protein y1333 [Yersinia pestis KIM 10]
 gi|45437201|gb|AAS62753.1| Predicted transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169750055|gb|ACA67573.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699296|gb|ACC89925.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 185

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 139

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158


>gi|242280449|ref|YP_002992578.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242123343|gb|ACS81039.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 143

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+++  A H    P RIS IA    +S  +L K+++ L KAG + + RG
Sbjct: 1   MRLTTRSRYGTRMILDIATHCTAGPVRISDIASRQGLSTKYLEKLIRELKKAGFIASKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + IT+  VV++ E    + EC  +  + C  + +C    V  KA  A +
Sbjct: 61  PGGGHSLAMAPEDITVGAVVRSLEGDAGLVECLDNDDL-CKRIDNCPTREVWIKASKAMY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L + SI  L++  S
Sbjct: 120 AALDEISIADLLKEGS 135


>gi|308050471|ref|YP_003914037.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
           DSM 9799]
 gi|307632661|gb|ADN76963.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
           DSM 9799]
          Length = 153

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAILDVALHSPEGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA +I +  VV A +ES     C    K +C     C   S+     +   
Sbjct: 61  PGGGYLLGRPAAEIAVGMVVHAVDESVDATRCHG--KSNCQGGARCLTHSLWGDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   S+  L+ NR 
Sbjct: 119 SFLNGISLADLMANRD 134


>gi|270264746|ref|ZP_06193011.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041429|gb|EFA14528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 164

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKEASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLAELVNNQEVL 136


>gi|167581217|ref|ZP_02374091.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
 gi|167619304|ref|ZP_02387935.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
 gi|257138520|ref|ZP_05586782.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 161

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++++E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLADLV 131


>gi|83720448|ref|YP_442322.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|83654273|gb|ABC38336.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 164

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 4   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++++E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 64  GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 124 ELDGATLADLV 134


>gi|325290069|ref|YP_004266250.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965470|gb|ADY56249.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 165

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R  YG+++++  A+H N+ P  +  +A+   +SE +L +++  L KAG+V+++RG
Sbjct: 1   MRFSTRGRYGVQLMVDLALHSNNEPISLKSVADRQKLSEHYLEQLVPDLRKAGMVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
            +GG  L +  + I + D+++A E      EC      + C     C    V  +  ++ 
Sbjct: 61  AQGGYILAKKTEDIIVGDIIRALEGPIAPVECSGQKTENCCEKTNFCLTREVWVRVSDSI 120

Query: 119 FDVLTQYSIECLVRNRSS 136
            D++   S+  LV+    
Sbjct: 121 NDLVDSISLADLVQEAEK 138


>gi|148380524|ref|YP_001255065.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
 gi|153931906|ref|YP_001384811.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936580|ref|YP_001388282.1| rrF2 family protein [Clostridium botulinum A str. Hall]
 gi|153940007|ref|YP_001391866.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
 gi|168180542|ref|ZP_02615206.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
 gi|170756317|ref|YP_001782184.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
 gi|170760847|ref|YP_001787887.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|226949924|ref|YP_002805015.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290008|emb|CAL84127.1| RRF2 family regulatory protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927950|gb|ABS33450.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932494|gb|ABS37993.1| rrF2 family protein [Clostridium botulinum A str. Hall]
 gi|152935903|gb|ABS41401.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
 gi|169121529|gb|ACA45365.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
 gi|169407836|gb|ACA56247.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|182668574|gb|EDT80553.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
 gi|226841762|gb|ACO84428.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295319890|gb|ADG00268.1| rrF2 family protein [Clostridium botulinum F str. 230613]
          Length = 148

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI+    P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    IT+ D+++  E    ++ C       C  +  C    +  K   +  
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +++   +++ +V +   I 
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138


>gi|315633897|ref|ZP_07889186.1| iron-sulfur cluster assembly transcription regulator IscR
           [Aggregatibacter segnis ATCC 33393]
 gi|315477147|gb|EFU67890.1| iron-sulfur cluster assembly transcription regulator IscR
           [Aggregatibacter segnis ATCC 33393]
          Length = 160

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH D  P  +S I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAIHADNGPVSLSDISERQHISLSYLEQLFAKLRRNNLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    + I+I  ++ A  E+    +C    K +C     C   ++  K      
Sbjct: 61  PGGGYKLGHMPEDISIGMIIAAVNENIDTTKCLG--KGNCQNGQECLTHTLWDKLSQRIA 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV      K 
Sbjct: 119 DFLNEITLAELVSQHKQKKP 138


>gi|171317873|ref|ZP_02907050.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171096942|gb|EDT41812.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 172

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  +    I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++T+  VV+ATE  F +  CF++       C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPDSLKLTVGQVVRATESDFALVGCFSADGGASRGCVIEPQCRLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L  +++  L    S +  +  
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145


>gi|317490853|ref|ZP_07949289.1| iron-sulfur cluster assembly transcription factor IscR
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920400|gb|EFV41723.1| iron-sulfur cluster assembly transcription factor IscR
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 165

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDAAEIAVGTVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLAELVNNQEVL 136


>gi|323499942|ref|ZP_08104901.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
 gi|323315183|gb|EGA68235.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
          Length = 168

 Score =  163 bits (413), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C  + K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGEDAYTIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+++   ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137


>gi|238795105|ref|ZP_04638696.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
           29909]
 gi|238725553|gb|EEQ17116.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
           29909]
          Length = 185

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158


>gi|123441401|ref|YP_001005388.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238788188|ref|ZP_04631983.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
           ATCC 33641]
 gi|332162656|ref|YP_004299233.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|189044754|sp|A1JKQ1|ISCR_YERE8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|122088362|emb|CAL11153.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238723775|gb|EEQ15420.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
           ATCC 33641]
 gi|318606762|emb|CBY28260.1| iron-sulfur cluster regulator IscR [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666886|gb|ADZ43530.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330859250|emb|CBX69600.1| HTH-type transcriptional regulator iscR [Yersinia enterocolitica
           W22703]
          Length = 164

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137


>gi|254519288|ref|ZP_05131344.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
 gi|226913037|gb|EEH98238.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
          Length = 150

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  A+H  D P  I  I++   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAMHYGDAPVSIKTISQRQNISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L      IT+ DV+   E    +AEC      +C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLNYAPKDITVADVMNVLEGPVEIAECI--EGTECDNIDFCATRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +V+   +++ +V +   +K 
Sbjct: 119 EVMKNITLQDIVDDYVRMKD 138


>gi|238765525|ref|ZP_04626441.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC
           33638]
 gi|238796770|ref|ZP_04640276.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
           43969]
 gi|238696264|gb|EEP89065.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC
           33638]
 gi|238719501|gb|EEQ11311.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
           43969]
          Length = 164

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137


>gi|260429411|ref|ZP_05783388.1| putative transcriptional regulator [Citreicella sp. SE45]
 gi|260420034|gb|EEX13287.1| putative transcriptional regulator [Citreicella sp. SE45]
          Length = 159

 Score =  163 bits (413), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 57/141 (40%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IRVLM+CA ++      ++IA  C  SE  L +++  L + G + T RGR
Sbjct: 1   MRVTKRTNIAIRVLMHCAANSGRLVTKAEIARRCNASENHLAQVINQLAQLGYLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPADQI I DV +A E    +AECFA     CPL  +C L   L  A +AF+ 
Sbjct: 61  HGGLELGRPADQIRIGDVFRALEAPVPLAECFADVDNTCPLTNACRLKIALTDAASAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   S++ LV + + +  I 
Sbjct: 121 TLDPISLDTLVCDNAPLMDIL 141


>gi|124385754|ref|YP_001028829.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126450911|ref|YP_001081260.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|254357765|ref|ZP_04974038.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|124293774|gb|ABN03043.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126243781|gb|ABO06874.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|148026892|gb|EDK84913.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
          Length = 162

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 78/131 (59%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVLMYCA + D    I+++AE   +S+  L KI+  L + G +ET RGR
Sbjct: 1   MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL  P ++I I DV++A+E  F + ECF  +   C L   C L  +L  AL A+F 
Sbjct: 61  GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120

Query: 121 VLTQYSIECLV 131
            L   ++  LV
Sbjct: 121 ELDGATLTDLV 131


>gi|317493575|ref|ZP_07951996.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918518|gb|EFV39856.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 141

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +  D    I+Q+ +   +S   + KI+  L +AG V  VRG
Sbjct: 1   MQLTSFTDFGLRALIYMASLPADQMTNITQVTDVYGVSRNHMVKIINQLSRAGFVTAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I I DVV+  E    +  C       C +  +C L  VL+KA  AF 
Sbjct: 61  KNGGIRLGRAAKDIRIGDVVRELE-PLTLVNCSHEF---CHITTACRLKQVLQKATQAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L Q ++  L+   S + K+ 
Sbjct: 117 AELDQCTLADLIEENSPLYKLL 138


>gi|261365670|ref|ZP_05978553.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
 gi|288565837|gb|EFC87397.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
          Length = 154

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I  IAEA  IS+  L K++  LVK G + + RG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAVNDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D+I +  VV+  E    + EC      +C +  SC L  +L  A+ AFF 
Sbjct: 61  GGGLRLADTPDKINVGAVVRHLE-PMQIVECMG-ENNECLITPSCRLAGILGGAIKAFFA 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 HLDGFTLQDLLNKPT 133


>gi|51597176|ref|YP_071367.1| DNA-binding transcriptional regulator IscR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808332|ref|YP_652248.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
           Antiqua]
 gi|108811403|ref|YP_647170.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
           Nepal516]
 gi|145599514|ref|YP_001163590.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
           Pestoides F]
 gi|149365356|ref|ZP_01887391.1| Fe-S cluster-containing transcription factor [Yersinia pestis
           CA88-4125]
 gi|153947579|ref|YP_001400148.1| IscR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418343|ref|YP_001605041.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Angola]
 gi|165928257|ref|ZP_02224089.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166008265|ref|ZP_02229163.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212578|ref|ZP_02238613.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398867|ref|ZP_02304391.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421227|ref|ZP_02312980.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423261|ref|ZP_02315014.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218929956|ref|YP_002347831.1| DNA-binding transcriptional regulator IscR [Yersinia pestis CO92]
 gi|229838481|ref|ZP_04458640.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895486|ref|ZP_04510657.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
 gi|229899050|ref|ZP_04514194.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901657|ref|ZP_04516779.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
 gi|270489849|ref|ZP_06206923.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis KIM D27]
 gi|294504543|ref|YP_003568605.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
 gi|81638849|sp|Q667Y0|ISCR_YERPS RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371156|sp|Q1C5G9|ISCR_YERPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371157|sp|Q0WD07|ISCR_YERPE RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371158|sp|Q1CKB0|ISCR_YERPN RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044755|sp|A7FFX0|ISCR_YERP3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044756|sp|A4TMV5|ISCR_YERPP RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711630|sp|A9R819|ISCR_YERPG RecName: Full=HTH-type transcriptional regulator iscR
 gi|51590458|emb|CAH22098.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775051|gb|ABG17570.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Nepal516]
 gi|108780245|gb|ABG14303.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Antiqua]
 gi|115348567|emb|CAL21508.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145211210|gb|ABP40617.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
           Pestoides F]
 gi|149291769|gb|EDM41843.1| Fe-S cluster-containing transcription factor [Yersinia pestis
           CA88-4125]
 gi|152959074|gb|ABS46535.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351158|gb|ABX85106.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis Angola]
 gi|165919764|gb|EDR37097.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992647|gb|EDR44948.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206509|gb|EDR50989.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960716|gb|EDR56737.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051371|gb|EDR62779.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057431|gb|EDR67177.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229681586|gb|EEO77680.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
 gi|229687995|gb|EEO80067.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694847|gb|EEO84894.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701292|gb|EEO89320.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
 gi|262362464|gb|ACY59185.1| hypothetical protein YPD4_2278 [Yersinia pestis D106004]
 gi|270338353|gb|EFA49130.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
           pestis KIM D27]
 gi|294355002|gb|ADE65343.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
 gi|320016040|gb|ADV99611.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 164

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137


>gi|296157751|ref|ZP_06840585.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
 gi|295891997|gb|EFG71781.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
          Length = 166

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIRDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  CF   + +   C +   C L   L  A +A
Sbjct: 61  NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I  + +    +  +  
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145


>gi|114321038|ref|YP_742721.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227432|gb|ABI57231.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 158

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  A+H    P  ++ I+E+  IS  +L ++   L K  +V  VRG
Sbjct: 1   MKLSTKGRYAVTAMMDLALHEGQGPVTLADISESQGISLSYLEQLFARLRKHSLVSGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PADQITI D++ A +E+     C      DC     C    +        +
Sbjct: 61  PGGGYRLAQPADQITIADIITAVDENVDATRCKGRG--DCQEGERCLTHDLWMDLSRQIY 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   ++  L +  +
Sbjct: 119 DFLNGITLAQLAQEPA 134


>gi|290473406|ref|YP_003466272.1| hypothetical protein XBJ1_0326 [Xenorhabdus bovienii SS-2004]
 gi|289172705|emb|CBJ79476.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 139

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L   G+V  +RG
Sbjct: 1   MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSNLGLVNAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA +I I DVV++ E    +  C A     C +  +C L  VL +A+  F 
Sbjct: 61  KNGGISLGKPASEIKIGDVVRSLE-PLSLVNCSA-----CYITPACRLKLVLNQAVENFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L ++++  +V++   + ++  A
Sbjct: 115 QELDKHTLADMVKDNRPLYQLLLA 138


>gi|238753892|ref|ZP_04615252.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
           29473]
 gi|238707880|gb|EEQ00238.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
           29473]
          Length = 164

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQNGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A QI +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDAAQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137


>gi|167771918|ref|ZP_02443971.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
           17241]
 gi|167665716|gb|EDS09846.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
           17241]
          Length = 143

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H  +    + +IA+   ISE +L  IL+ LV+   +  VRG
Sbjct: 1   MMISTKGRYALRVMVDLAEHQGEGYIPLKEIAQRQEISEKYLEAILKVLVREHFLIGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  +Q T   +++ TE S     C   H + CP    C    + +K      
Sbjct: 61  KGGGYRLSRAPEQYTAGSIIRLTEGSLAPVACLEPHALACPRAAHCRTLPMWKKFDQVVN 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D    Y++  L+ +  +
Sbjct: 121 DFFDSYTLADLMEHSEN 137


>gi|227112705|ref|ZP_03826361.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227329514|ref|ZP_03833538.1| DNA-binding transcriptional regulator IscR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 164

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   +++ LV N+  +
Sbjct: 119 DFLNNITLDELVNNKEVL 136


>gi|163814282|ref|ZP_02205671.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
 gi|158449917|gb|EDP26912.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
          Length = 144

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  A   D  P  I  +A    ISE +L +I   L   G+V++ RG
Sbjct: 1   MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSMLNSGGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ TE       C  + +  C     C    + R+   A  
Sbjct: 61  PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCDREARCSTIGLWRRLDKAIR 120

Query: 120 DVLTQYSIECLVRNRSS 136
           DV+   +I  LV  R  
Sbjct: 121 DVVDTTTIADLVAERPE 137


>gi|238758817|ref|ZP_04619990.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
           35236]
 gi|238702925|gb|EEP95469.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
           35236]
          Length = 185

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 22  MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 82  PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158


>gi|118444398|ref|YP_878357.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           novyi NT]
 gi|118134854|gb|ABK61898.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           novyi NT]
          Length = 144

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI+  + P  I  IA+   ISEL+L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYGESPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    I++ D++   E    ++ C  + +  C  +  C    + +K   +  
Sbjct: 61  AQGGYVLNKHPKDISVSDIINVLEGPIEISSCVDTGE--CDNMNVCPTRLLWKKIKKSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
            V    +++ +  +   +K
Sbjct: 119 KVTESVTLQDMANDYKRLK 137


>gi|91783441|ref|YP_558647.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91687395|gb|ABE30595.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           xenovorans LB400]
          Length = 166

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +  + I  I++A  IS   L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISDAYGISRNHLMKVVQQLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL      +T+ ++V+ATE  F +  CF   + +   C +   C L   L  A +A
Sbjct: 61  NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L +++I  + +    +  +  
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145


>gi|291543838|emb|CBL16947.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           18P13]
          Length = 142

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A HN      ++ IAE   ISE +L  I+  L K G+V+ +RG
Sbjct: 1   MMISTKGRYALRVMIDLAEHNSGGYVPLADIAERQEISEKYLESIVSMLSKKGLVDALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ D++  TE S     C       C     C    + ++      
Sbjct: 61  KGGGYRLNRAPDQYTVADILYVTEGSMAPVACLEPGAKTCDRAAYCRTLDMWKRLYELIT 120

Query: 120 DVLTQYSIECLVRNRSS 136
              +  +I  L+ ++S 
Sbjct: 121 QFFSGITIADLIADKSG 137


>gi|261820558|ref|YP_003258664.1| IscR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604571|gb|ACX87057.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           wasabiae WPP163]
          Length = 164

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   +++ LV N+  + 
Sbjct: 119 DFLNNITLDELVNNKEVLN 137


>gi|89075977|ref|ZP_01162349.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
 gi|89048326|gb|EAR53905.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
          Length = 144

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G +ETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I + DVV+A E    +  C       C +  +C L  VL  A  AF 
Sbjct: 61  KNGGIRLGKSAESIIVGDVVRAIE-PLQIVNCSVDF---CHITPACRLKGVLADAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L +Y++  LV + + +  + +
Sbjct: 117 AELDKYTLLNLVEDNAPLLNLLS 139


>gi|296313550|ref|ZP_06863491.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
 gi|296839891|gb|EFH23829.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
          Length = 148

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|218290218|ref|ZP_03494372.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239693|gb|EED06884.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 140

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT  TDY +RVL+Y A   D    ++ +IA    IS   L K +  L + G +ETVRG
Sbjct: 1   MNLTLFTDYALRVLIYTANQPDGKLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL  PA  I + DVV+A E+ F V  CFA+    C L+  C L   L +A++AF 
Sbjct: 61  RGGGMRLALPARDIRVGDVVRAVEDDFAVVGCFAND--SCVLLPGCRLKRALGEAVDAFL 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L +Y++  +  + + +
Sbjct: 119 ETLNRYTLADIAASAAPV 136


>gi|212634528|ref|YP_002311053.1| hypothetical protein swp_1693 [Shewanella piezotolerans WP3]
 gi|212556012|gb|ACJ28466.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 153

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTDGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A +I++  VV+A +ES     C      +C     C   S+     +   
Sbjct: 61  PGGGYRLGTDACEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+R R 
Sbjct: 119 DFLNGISLAGLMRKRD 134


>gi|168182647|ref|ZP_02617311.1| rrF2 family protein [Clostridium botulinum Bf]
 gi|237796007|ref|YP_002863559.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674079|gb|EDT86040.1| rrF2 family protein [Clostridium botulinum Bf]
 gi|229263788|gb|ACQ54821.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 148

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI+    P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    IT+ D+++  E    ++ C       C  V  C    +  K   +  
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNVDCCATRLLWAKIKKSLD 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +++   +++ +V +   I 
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138


>gi|298370162|ref|ZP_06981478.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281622|gb|EFI23111.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 150

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAETYNISKSHLMKVVTALVKGGFLTSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L  P ++I I  VV+  E    + EC      +C +  SC L  +L   + AF +
Sbjct: 61  GGGLKLAEPPEKINIGSVVRHLE-PMQLVECMGRDN-NCLITPSCRLADILSGGIKAFLN 118

Query: 121 VLTQYSIECLVRNRS 135
            L  +++  L+   +
Sbjct: 119 YLDGFTLSDLLNKPT 133


>gi|261401746|ref|ZP_05987871.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
 gi|313667825|ref|YP_004048109.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|269208119|gb|EEZ74574.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
 gi|309379076|emb|CBX22378.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005287|emb|CBN86720.1| transcriptional regulator [Neisseria lactamica 020-06]
          Length = 148

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I+ IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLASPPERINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|117620851|ref|YP_855204.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562258|gb|ABK39206.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 155

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 81/144 (56%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+R+    + + I  V++A E +    +C       C +V  C L + L++A+NAF 
Sbjct: 61  KNGGIRMACAPETVNIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKNALKEAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            V+  Y+++ L+ NR  ++K+F  
Sbjct: 118 AVMDSYTLQDLLANRDELQKVFGE 141


>gi|120600824|ref|YP_965398.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291147|ref|YP_001181571.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560917|gb|ABM26844.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
           W3-18-1]
 gi|145562837|gb|ABP73772.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens CN-32]
 gi|319428504|gb|ADV56578.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens 200]
          Length = 151

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+R LMY A+  D     RI++I +   +S   + KI+  L K G +ET+R
Sbjct: 1   MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKLGYLETIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S    +C    K  C    +C L  VL  A++A+
Sbjct: 61  GKMGGFRLGKPACEINLGQLVRVLENSLAPIDCS---KPYCRFTPACKLKGVLAHAVDAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
            +VL QYS++ +V NR  +  + 
Sbjct: 118 LNVLDQYSLQDIVSNRDELLVLL 140


>gi|146277178|ref|YP_001167337.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555419|gb|ABP70032.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 144

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 82/141 (58%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CAI+     R +++A AC  SE  L +++  L + G + TVRGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA+ I + DV +  E +    ECF+  +  CPL  SC L   L  AL+AF+ 
Sbjct: 61  CGGLALGRPAENIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALSAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + S+  +V+  + ++++ 
Sbjct: 121 SLDKLSLRDMVQENTELEELL 141


>gi|238027044|ref|YP_002911275.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           glumae BGR1]
 gi|237876238|gb|ACR28571.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           glumae BGR1]
          Length = 156

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G VETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115
            GG+R+   +  +T+ +VV+A E  F +  CF           C +   C L  VL  A 
Sbjct: 61  NGGLRMNPASATLTVGEVVRAGESDFALVGCFGGEGEAIAHRGCVIEPHCRLKGVLAAAR 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +AFF  L +++I  L    + + +   
Sbjct: 121 DAFFAELDRHTIADLTHPGAQLARALG 147


>gi|262045389|ref|ZP_06018413.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037307|gb|EEW38554.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 156

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V  VRG+
Sbjct: 17  QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA QI + DVV+  E    +  C +     C +  +C L   L +A  +F  
Sbjct: 77  NGGIRLGKPAGQIRVGDVVRDLE-PLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y +  LV     + K+ 
Sbjct: 133 ELDNYMLADLVEKNQPLYKLL 153


>gi|322417974|ref|YP_004197197.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320124361|gb|ADW11921.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 152

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q L K GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ATE    + +C    K +C   GSC   +V  ++ +   
Sbjct: 61  PQGGYCLAKSPEDITVRAVIEATEGDTLIVDCSGRRKGECGFDGSCVTQTVWEESNSRLN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           +     +++ L     S+
Sbjct: 121 EFFESITLKTLCDRGESL 138


>gi|308188263|ref|YP_003932394.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
 gi|308058773|gb|ADO10945.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
          Length = 147

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A   +     I+++     +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYLAALPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  P  QI I DVV+  E    + +C       C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMPPRQIVIGDVVRKME-PLQLVDC-----ASCSITPACRLKQALHDAVQRFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV   + + +I 
Sbjct: 115 QELDSYTLADLVEGNTPLYEII 136


>gi|291545181|emb|CBL18290.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           18P13]
          Length = 165

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A H D     I  IA+   ISE +L +I+  L + G V + RG
Sbjct: 24  MKISTKGRYALRLMYELACHADEGYLNIRAIAQRQQISEKYLEQIIAMLSRGGCVISSRG 83

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +P +  T+  +++ TE       C       C     C    V     NA  
Sbjct: 84  AQGGYRLAKPPEAYTVGMILRLTEGCLAPVPCMQEGCAPCERAECCPTQFVWEALDNAIS 143

Query: 120 DVLTQYSIECLVRN 133
            V+ + ++  +V +
Sbjct: 144 GVIDRITLADIVAH 157


>gi|291534433|emb|CBL07545.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
           M50/1]
 gi|291541272|emb|CBL14383.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
           XB6B4]
          Length = 143

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++N   P  +  IA    IS+ +L +I+  L KA  V+++RG
Sbjct: 1   MRISTKGRYALRLMLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  ++ T+  +++ TE S     C       C  +  C    V +K   A  
Sbjct: 61  AQGGYILTKRPEEYTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAIN 119

Query: 120 DVLTQYSIECLVR 132
            V+   ++  LV 
Sbjct: 120 QVVDSITLADLVD 132


>gi|223935874|ref|ZP_03627789.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
 gi|223895475|gb|EEF61921.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
          Length = 153

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R +Y +R L+   ++ D    RI  I++   I + FL +IL  L  AGIV++ RG
Sbjct: 1   MKLSLRGEYALRALIVLGLNYDQSVVRIQTISDQQNIPKRFLEQILNDLKTAGIVDSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116
             GG RL +  DQIT+  V++  E       C +     K  CP    CG+ S++++  +
Sbjct: 61  VSGGYRLGKAPDQITLATVIRYIEGPLAPVSCVSEKFYEKCSCPDESKCGIRSIMKEVRD 120

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
           A   +L   ++  L      ++
Sbjct: 121 AIVKILDGVTVAELCDRVKQLQ 142


>gi|261378411|ref|ZP_05982984.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
 gi|269145183|gb|EEZ71601.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
          Length = 148

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYAAINDDMLVNIGTIAETYGISKSHLMKVVTSLVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDCINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAIKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLDKPT 133


>gi|145297732|ref|YP_001140573.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850504|gb|ABO88825.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 157

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +     + +++++    +S   + K++  LVK G +++ RG
Sbjct: 1   MRLTSYTDFGLRALLYLATLPQGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+R+    + + I  V++A E +    +C   +   C +V  C L S L++A+NAF 
Sbjct: 61  KNGGIRMACTPETVNIGQVIRALEGNLDGIDC---NSPVCHIVSVCLLKSALKEAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            V+  Y+++ L+ NR  ++K+F  
Sbjct: 118 AVMDSYTLQDLLANRDELQKVFGE 141


>gi|167623502|ref|YP_001673796.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167353524|gb|ABZ76137.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           halifaxensis HAW-EB4]
          Length = 153

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C      +C     C   S+     N   
Sbjct: 61  PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSNQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 119 DFLNGISLAGLMHKRD 134


>gi|253689401|ref|YP_003018591.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259493875|sp|C6DBJ2|ISCR_PECCP RecName: Full=HTH-type transcriptional regulator iscR
 gi|251755979|gb|ACT14055.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 164

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++I +  V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   +++ LV N+  +
Sbjct: 119 DFLNNITLDELVNNKEVL 136


>gi|295093897|emb|CBK82988.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
           ART55/1]
          Length = 144

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  A   D  P  I  +A    ISE +L +I   L   G+V++ RG
Sbjct: 1   MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSVLNSGGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + IT+  V++ TE       C  + +  C     C    + R+   A  
Sbjct: 61  PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCEREARCSTIGLWRRLDKAIR 120

Query: 120 DVLTQYSIECLVRNRSS 136
           DV+   +I  LV  R  
Sbjct: 121 DVVDTTTIADLVAERPE 137


>gi|332288684|ref|YP_004419536.1| iron-responsive transcriptional regulator [Gallibacterium anatis
           UMN179]
 gi|330431580|gb|AEC16639.1| iron-responsive transcriptional regulator [Gallibacterium anatis
           UMN179]
          Length = 148

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TDY +RVL+Y A H D  + I +IA A  ISE  L K++  L K  ++ ++RG+
Sbjct: 1   MKLSTFTDYNLRVLLYLAAHQDRLSTIQEIALAYNISENHLMKVIHHLAKNDLILSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   ++ +  +V+  E+   + EC    K  C +  SC L   L  A N+F++
Sbjct: 61  GGGIRLHRAPSELNLGKIVRLAEQKGPIVECLGD-KNKCCIAPSCRLPLALNDAFNSFYE 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L++Y++  ++ + ++++ + 
Sbjct: 120 TLSKYTLADVMIDGATMQPLL 140


>gi|304398596|ref|ZP_07380468.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304353807|gb|EFM18182.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 165

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + ++ I++ +V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKESNTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   ++  LV N+  +
Sbjct: 119 EFLNNITLAELVNNQEIL 136


>gi|40063649|gb|AAR38438.1| rrf2 family protein [uncultured marine bacterium 582]
          Length = 147

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 75/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+K TDY +R+LM+ A+ + +     QIAE        L K+ Q LV+ G V +VRGR
Sbjct: 1   MQLSKFTDYALRILMHLAVADKHMLTTRQIAEIHDAKYNHLAKVTQWLVRKGYVASVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  + + +  VV+  E    + +C       C L  SCGLTS LR A  AFF 
Sbjct: 61  SGGLRLAKETNDVNVGLVVRDLEGQSELVDCLRPSGGSCILAPSCGLTSALRAAQEAFFQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++  L +N + I ++ 
Sbjct: 121 SLDTLTLADLTKNDAPISRLL 141


>gi|154246969|ref|YP_001417927.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154161054|gb|ABS68270.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 149

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ +TDY +R LM+ A+ + + + I++IA A  IS+  L K+ Q L   G VE VRGR
Sbjct: 1   MRLSVQTDYALRTLMFLAVKDGH-HSIAEIAHAYGISKNHLMKVAQRLAAEGFVEGVRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RPA+ + +  +++  E++    ECF +    C +  +CGL   L  AL AF  
Sbjct: 60  SGGLKLARPANALNVGSIMRIMEDTGTFVECFDAATNSCVVTPACGLRHALAGALEAFAR 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L Q++I  LV +  S     +A
Sbjct: 120 HLDQFTIADLVPDSKSYGWQLDA 142


>gi|292669568|ref|ZP_06602994.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
 gi|292648777|gb|EFF66749.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
          Length = 162

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+H  +    +  IA+   ISE +L +++ PL +AG+VE+VRG
Sbjct: 16  MKLSTKGRYSVTALYELALHYGEGVVPLKTIAKTQGISENYLEQLMAPLRRAGLVESVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L  P +++TI  ++ A E    + +C      +    C   G+C    +  +  
Sbjct: 76  AQGGYTLALPPEEVTIGQIITAVEGPIALVDCLLTSAEAVDQSCVRAGNCVTRQIWEEVC 135

Query: 116 NAFFDVLTQYSIECLVRN 133
           +   +VL   ++  L+R 
Sbjct: 136 DNINNVLNNIALSDLMRR 153


>gi|310829310|ref|YP_003961667.1| RRF2 family protein [Eubacterium limosum KIST612]
 gi|308741044|gb|ADO38704.1| RRF2 family protein [Eubacterium limosum KIST612]
          Length = 135

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   A  + + P  I +IAE    S+ ++ ++   L KAG++ ++RG
Sbjct: 1   MRLSTKGRYGVLAMYELACRYGNGPVSIKEIAEKQNFSDSYMEQLFSTLKKAGLIVSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
            +GG  L R    I++ ++++A E    +A+C    +   C   G C    +  +  ++ 
Sbjct: 61  AKGGYILSREPRDISVGEIIRALEGPIELADCVGGPEGYVCRKSGECVTRGLWMEIRDSI 120

Query: 119 FDVLTQYSIECLVRN 133
            +++   S++ L+ N
Sbjct: 121 NNIIDNRSLQDLMDN 135


>gi|222150933|ref|YP_002560086.1| hypothetical protein MCCL_0683 [Macrococcus caseolyticus JCSC5402]
 gi|222120055|dbj|BAH17390.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 138

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY A   ++  +I +IA    IS+  L K++  L   G +ET RGR
Sbjct: 1   MKLTLYSDYSLRVLMYIARQ-EHRVQIDEIANFYGISKNHLTKVVNNLATLGYIETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+    ++I I  +++ TEE F + ECF      CP+ G CGL  VL +AL A+  
Sbjct: 60  GGGIRIKMAPEEINIGALIRKTEEHFNLVECFDRETNTCPIAGICGLQGVLSEALGAYLS 119

Query: 121 VLTQYSIECLVRNRS 135
           VL  Y++  ++ N+ 
Sbjct: 120 VLDSYTLNDILHNKR 134


>gi|307132078|ref|YP_003884094.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
           3937]
 gi|306529607|gb|ADM99537.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
           3937]
          Length = 164

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   +++ LV N+  +
Sbjct: 119 EFLNNITLDELVNNKEIL 136


>gi|161870639|ref|YP_001599812.1| hypothetical protein NMCC_1709 [Neisseria meningitidis 053442]
 gi|161596192|gb|ABX73852.1| nitric oxide-sensitive repressor [Neisseria meningitidis 053442]
          Length = 147

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|225075994|ref|ZP_03719193.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
           NRL30031/H210]
 gi|224952709|gb|EEG33918.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
           NRL30031/H210]
          Length = 152

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNISTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+  E    V EC      +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHLE-PMQVVECMG-ENNECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLVRNRS 135
            L QYS++ L+   +
Sbjct: 119 HLDQYSLQDLLDKPT 133


>gi|242240170|ref|YP_002988351.1| DNA-binding transcriptional regulator IscR [Dickeya dadantii
           Ech703]
 gi|242132227|gb|ACS86529.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech703]
          Length = 164

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   +++ LV N+  +
Sbjct: 119 EFLNNITLDELVNNKEIL 136


>gi|15640766|ref|NP_230396.1| hypothetical protein VC0747 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591450|ref|ZP_01678726.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121729724|ref|ZP_01682165.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673230|ref|YP_001216232.1| hypothetical protein VC0395_A0276 [Vibrio cholerae O395]
 gi|153216250|ref|ZP_01950350.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153800571|ref|ZP_01955157.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153817260|ref|ZP_01969927.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822734|ref|ZP_01975401.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153824617|ref|ZP_01977284.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153829399|ref|ZP_01982066.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|227080926|ref|YP_002809477.1| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2]
 gi|254225012|ref|ZP_04918626.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254285465|ref|ZP_04960429.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254847884|ref|ZP_05237234.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744554|ref|ZP_05418505.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
 gi|262161312|ref|ZP_06030423.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
 gi|262168805|ref|ZP_06036500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
 gi|262190470|ref|ZP_06048721.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
 gi|262402868|ref|ZP_06079429.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
 gi|297581146|ref|ZP_06943070.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499120|ref|ZP_07008927.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655192|gb|AAF93912.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546701|gb|EAX56880.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121628541|gb|EAX61024.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114395|gb|EAY33215.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124123860|gb|EAY42603.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125622399|gb|EAZ50719.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126512176|gb|EAZ74770.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126519765|gb|EAZ76988.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146315113|gb|ABQ19652.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148875119|gb|EDL73254.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149741835|gb|EDM55864.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150424327|gb|EDN16264.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008814|gb|ACP05026.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012571|gb|ACP08781.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|254843589|gb|EET22003.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737585|gb|EET92979.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
 gi|262022923|gb|EEY41629.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
 gi|262029062|gb|EEY47715.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
 gi|262033642|gb|EEY52131.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
 gi|262351650|gb|EEZ00783.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
 gi|297534462|gb|EFH73299.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543453|gb|EFH79503.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 188

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 16  MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   +  I+I  V+ A +ES    +C  + K DC     C   ++ R   +   
Sbjct: 76  PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 133

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 134 DFLNNITLGELMMDNEVLE 152


>gi|291547327|emb|CBL20435.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           SR1/5]
          Length = 144

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A +    P R+  +A+   IS+ +L +I+  L KAG V +VRG
Sbjct: 1   MRISTRGRYALRLMLDLATNYTGKPIRLKDVAKRQEISDKYLEQIISILNKAGFVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  D+ TI  +++ TE S    EC   +   C    +C    + +K  +A  
Sbjct: 61  PQGGYALQQTPDKYTIGMILRLTEGSLSPVECLDDNGAICDREENCVTQILWKKLDDAIK 120

Query: 120 DVLTQYSIECLVRNRS 135
            V+   ++E L+  ++
Sbjct: 121 GVVDHITLEDLMNWQA 136


>gi|152978539|ref|YP_001344168.1| BadM/Rrf2 family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840262|gb|ABR74233.1| transcriptional regulator, BadM/Rrf2 family [Actinobacillus
           succinogenes 130Z]
          Length = 154

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+   + P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALFGTNGPVTLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    D+I+I  ++ A  E+  V +C    K +C     C   S+  +  +   
Sbjct: 61  PGGGYQLGHSMDKISIGMIIAAVNENIAVTKCLG--KGNCQNGTECLTHSLWAELSHRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV+   S +K
Sbjct: 119 DFLDKITLAELVKKHHSKQK 138


>gi|90581369|ref|ZP_01237165.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
 gi|90437479|gb|EAS62674.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
          Length = 144

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++ E   +S   + KI+  L + G +ETVRG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I + DVV+A E    +  C       C +  +C L  VL  A  AF 
Sbjct: 61  KNGGIRLGKSAESIIVGDVVRAIE-PLQIVNCSLDF---CHITPACRLKGVLADAREAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L +Y++  LV + + +  + +
Sbjct: 117 AELDKYTLLTLVEDNAPLLNLLS 139


>gi|157376007|ref|YP_001474607.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318381|gb|ABV37479.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
           HAW-EB3]
          Length = 153

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A +I++  VV+A +ES     C      +C     C   S+         
Sbjct: 61  PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 119 DFLNGISLAGLMNKRD 134


>gi|187778845|ref|ZP_02995318.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
           15579]
 gi|187772470|gb|EDU36272.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
           15579]
          Length = 148

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AI+    P  I  I+E   ISE +L ++  PL KA +++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    IT+ D+++  E    ++ C       C  V  C    +  K   +  
Sbjct: 61  AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCGNVDCCATRLLWAKIKKSLD 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +++   +++ +V +   I  
Sbjct: 120 NIMESTTLQDMVEDYRKINP 139


>gi|154243891|ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154163013|gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 145

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 67/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R LM+ A   +      +IA+A  IS   L K+++ L  AG+V T RG 
Sbjct: 1   MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R AD IT+ ++V+  E    + ECF +    C L   C L   L+ A  AF  
Sbjct: 61  GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120

Query: 121 VLTQYSIEC 129
            L + ++  
Sbjct: 121 ELDRTTLAE 129


>gi|163749695|ref|ZP_02156941.1| Rrf2 family protein [Shewanella benthica KT99]
 gi|161330508|gb|EDQ01466.1| Rrf2 family protein [Shewanella benthica KT99]
          Length = 167

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 15  MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRHGLVSSVRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES  V  C      DC     C   S+         
Sbjct: 75  PGGGYRLGADAVDISVGMVVRAVDESVDVTRCKGQG--DCQNGTRCLTHSLWGDLSKQIS 132

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 133 DFLNGISLAGLMNKRD 148


>gi|59801857|ref|YP_208569.1| hypothetical protein NGO1519 [Neisseria gonorrhoeae FA 1090]
 gi|194099329|ref|YP_002002430.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
 gi|239999588|ref|ZP_04719512.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|240014762|ref|ZP_04721675.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI18]
 gi|240017211|ref|ZP_04723751.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA6140]
 gi|240081152|ref|ZP_04725695.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|240113364|ref|ZP_04727854.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|240116288|ref|ZP_04730350.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|240118576|ref|ZP_04732638.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|240121285|ref|ZP_04734247.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID24-1]
 gi|240124119|ref|ZP_04737075.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|240126265|ref|ZP_04739151.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|240128788|ref|ZP_04741449.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|254494301|ref|ZP_05107472.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
 gi|260439895|ref|ZP_05793711.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|268595398|ref|ZP_06129565.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|268597263|ref|ZP_06131430.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|268599439|ref|ZP_06133606.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|268601953|ref|ZP_06136120.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|268604283|ref|ZP_06138450.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|268682742|ref|ZP_06149604.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|268684848|ref|ZP_06151710.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|268687169|ref|ZP_06154031.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|291043171|ref|ZP_06568894.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|293398504|ref|ZP_06642682.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
 gi|59718752|gb|AAW90157.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934619|gb|ACF30443.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
 gi|226513341|gb|EEH62686.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
 gi|268548787|gb|EEZ44205.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
 gi|268551051|gb|EEZ46070.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
 gi|268583570|gb|EEZ48246.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
 gi|268586084|gb|EEZ50760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
 gi|268588414|gb|EEZ53090.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
 gi|268623026|gb|EEZ55426.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
 gi|268625132|gb|EEZ57532.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
 gi|268627453|gb|EEZ59853.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
 gi|291012777|gb|EFE04760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
 gi|291610975|gb|EFF40072.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
 gi|317164836|gb|ADV08377.1| hypothetical protein NGTW08_1415 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 147

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y A+++D    I+ IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPERINIGAVVRHLE-PMQLVECMG-PNNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|215512187|gb|ACJ68081.1| NsrR [Moraxella catarrhalis O35E]
 gi|215512191|gb|ACJ68084.1| NsrR [Moraxella catarrhalis 7169]
 gi|215512196|gb|ACJ68088.1| NsrR [Moraxella catarrhalis]
 gi|326561869|gb|EGE12204.1| transcriptional regulator NsrR [Moraxella catarrhalis 7169]
 gi|326563304|gb|EGE13571.1| transcriptional regulator NsrR [Moraxella catarrhalis 46P47B1]
 gi|326563419|gb|EGE13684.1| transcriptional regulator NsrR [Moraxella catarrhalis 12P80B1]
 gi|326565958|gb|EGE16119.1| transcriptional regulator NsrR [Moraxella catarrhalis 103P14B1]
 gi|326569208|gb|EGE19269.1| transcriptional regulator NsrR [Moraxella catarrhalis BC7]
 gi|326571881|gb|EGE21886.1| transcriptional regulator NsrR [Moraxella catarrhalis BC8]
 gi|326575393|gb|EGE25318.1| transcriptional regulator NsrR [Moraxella catarrhalis 101P30B1]
 gi|326577989|gb|EGE27853.1| transcriptional regulator NsrR [Moraxella catarrhalis O35E]
          Length = 177

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97
           G+ GG+RL      I + ++V+ TE  FFV  CFA                         
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120

Query: 98  --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
                    C +  +C L  V  +A  AF  VL  Y++  ++ N   ++   +
Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173


>gi|90410859|ref|ZP_01218873.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
 gi|90328072|gb|EAS44383.1| hypothetical transcriptional regulator [Photobacterium profundum
           3TCK]
          Length = 172

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I +  V+ A +ES    +C    K DC     C   ++     +   
Sbjct: 61  PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+++ +
Sbjct: 119 GFLNNITLGELMKDNN 134


>gi|291562648|emb|CBL41464.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SS3/4]
          Length = 143

 Score =  161 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RVL+  A H  D    +   A    ISE +L  I++ LVKA ++E VRG
Sbjct: 1   MMVSTKGRYALRVLIDLAEHQTDGYIPLKDTAARQEISEKYLEGIIKILVKAKLLEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +  +Q T+  +++ TE S     C      DCP +GSC    + +       
Sbjct: 61  KGGGYRLTKAPEQYTVGSILRLTENSMAPVACLEPGSTDCPRMGSCKTLPLWQGLDKVVN 120

Query: 120 DVLTQYSIECLVRN 133
           + L   +I  LV+N
Sbjct: 121 EYLDGVTIADLVQN 134


>gi|262275147|ref|ZP_06052958.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
           hollisae CIP 101886]
 gi|262221710|gb|EEY73024.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
           hollisae CIP 101886]
          Length = 144

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R LMY A +       I+ + E   +S   + KI+  + +AG VE VRG
Sbjct: 1   MQLTSFTDYGLRALMYLAMLPPGELTSITVVTEKYGVSRNHMVKIIHRMSQAGFVEAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA+ I I DV+++ E    +  C      +C +  +C L + + KAL AF 
Sbjct: 61  KNGGIRLGKPAELIVIGDVIRSLE-PLQLVNCA---PQNCHITPACRLKTAIAKALTAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             + +Y++  +V     ++ + 
Sbjct: 117 AEMDKYTLHDMVSGNDDLQHLL 138


>gi|134295879|ref|YP_001119614.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134139036|gb|ABO54779.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 171

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  +S+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYALRVMLYLAVRGDGLATIQEISDAYGVSKNHLMKVVQQLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
            GG+RL   + ++TI  VV+ATE  F +  CFA    +   C +   C L  VL  A +A
Sbjct: 61  NGGLRLFPASLKLTIGQVVRATENDFALVGCFAPDGGESRGCVIQPQCQLKGVLAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L    S +  +  
Sbjct: 121 FFAELDRHTIGELSVPASPLVALLG 145


>gi|54307944|ref|YP_128964.1| transcriptional regulator [Photobacterium profundum SS9]
 gi|81615497|sp|Q6LU63|ISCR_PHOPR RecName: Full=HTH-type transcriptional regulator iscR
 gi|46912370|emb|CAG19162.1| hypothetical transcriptional regulator [Photobacterium profundum
           SS9]
          Length = 172

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I +  V+ A +ES    +C    K DC     C   ++     +   
Sbjct: 61  PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+R+ +
Sbjct: 119 GFLNNITLGELMRDNN 134


>gi|253682230|ref|ZP_04863027.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum D str. 1873]
 gi|253561942|gb|EES91394.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum D str. 1873]
          Length = 144

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  AI+ ++ P  I  IA    ISEL+L ++  PL KA ++++VRG
Sbjct: 1   MKLSTKGRYGVRAMVDLAINYSESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ D++   E    ++ C  S +  C  +  C    +  K  N+  
Sbjct: 61  AQGGYVLSKHPKEISVSDIIDVLEGPIEISSCIDSGE--CNNMEVCPSRLLWEKIKNSID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +  +   +K
Sbjct: 119 EVTKSITLQDMANDYKRLK 137


>gi|171058160|ref|YP_001790509.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
           SP-6]
 gi|170775605|gb|ACB33744.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
           SP-6]
          Length = 165

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LMY     +    I+++A+A  ISE  L KI   L  AG +ETVRG+
Sbjct: 1   MRLTTMTDYALRLLMYVGQRPERLCTIAEVAQAYGISEAHLMKITHQLGLAGWIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     QI + ++V++ E  F + EC AS    C L G C LT +   AL AF +
Sbjct: 61  GGGMRLALEPAQINLGELVRSVEPDFALVECLASGNA-CSLTGRCRLTGIFDDALAAFME 119

Query: 121 VLTQYSIECLV 131
            L   ++  ++
Sbjct: 120 KLDARTLAEVL 130


>gi|127514738|ref|YP_001095935.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
           PV-4]
 gi|126640033|gb|ABO25676.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
           PV-4]
          Length = 150

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L K G ++TVR
Sbjct: 1   MQLTRYTDFGIRTLMYLALSPERETLFRIAEITEVFDLSANHVSKIVHHLGKEGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L +PADQI I  +V+  E S    +C    K  C    +C L  VL +A++A+
Sbjct: 61  GKAGGFKLGKPADQINIGVLVRTLENSLSPIDCS---KPYCRFSPACQLKGVLAEAVDAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL +YS+  +V NR  ++ + 
Sbjct: 118 LAVLDKYSLADVVSNRDELRALL 140


>gi|160895037|ref|ZP_02075811.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
 gi|156863468|gb|EDO56899.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
          Length = 156

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  Y +R+++Y A + N  P  I  +A+   IS+ +L +I+  L   G+V +VRG 
Sbjct: 14  KISTKGRYALRLMIYIAANSNGKPVSIKDVAKNEDISDKYLEQIISILNSGGLVRSVRGP 73

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +  + IT+  V++ TE +     C      +C     C   ++ ++  +A   
Sbjct: 74  QGGYLLRKAPEDITVGAVLRLTEGTLAPVACVEEDAPECERESICSTYNLWKQLYSAICS 133

Query: 121 VLTQYSIECLVRNRSS 136
           V+   +I  L  +R  
Sbjct: 134 VVDTTTIADLCNSRPE 149


>gi|319639116|ref|ZP_07993872.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
 gi|317399593|gb|EFV80258.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
          Length = 152

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    I  IAE   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+  E    V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLVRNRS 135
            L QYS++ L+   +
Sbjct: 119 HLDQYSLQDLLDKPT 133


>gi|241760757|ref|ZP_04758848.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
           SK114]
 gi|241318654|gb|EER55206.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
           SK114]
          Length = 152

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA+   IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLVYTAINDDSLVNISTIAKTYNISKSHLMKVVTSLVKGGFLVSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I I  VV+  E    V EC   +  +C +  SC LT ++  A+ AFF+
Sbjct: 61  GGGLRLADVPEKINIGAVVRHLE-PMQVVECMGDNN-ECLITPSCRLTGIITGAIKAFFN 118

Query: 121 VLTQYSIECLVRNRS 135
            L QYS++ L+   +
Sbjct: 119 HLDQYSLQDLLDKPT 133


>gi|326576519|gb|EGE26427.1| transcriptional regulator NsrR [Moraxella catarrhalis CO72]
          Length = 177

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97
           G+ GG+RL      I + ++V+ TE  FFV  CFA                         
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDDVMADNLIKIKTLD 120

Query: 98  --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
                    C +  +C L  V  +A  AF  VL  Y++  ++ N   ++   +
Sbjct: 121 LSVGQPALSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173


>gi|91774995|ref|YP_544751.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708982|gb|ABE48910.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
           flagellatus KT]
          Length = 149

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+RVLMY + H  + P  IS+IA    I    L K++  L K G ++T RG
Sbjct: 1   MQLTKFTDLGLRVLMYVSQHERNKPITISEIATQFNIPRNHLIKVVTFLNKTGWIQTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+RL      + +  V++  E S  +  C    +  CPL G CGL   L   LNAF+
Sbjct: 61  PNGGLRLGTDPASLHLGHVIRVLEGSASLVNC---QEPPCPLAGQCGLKHALDLGLNAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           D +  Y+++ ++RNR++
Sbjct: 118 DYMDTYTLQDVIRNRTA 134


>gi|77463446|ref|YP_352950.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462302|ref|YP_001043416.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639304|ref|YP_002525566.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332558324|ref|ZP_08412646.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387864|gb|ABA79049.1| transcriptional regulator / transcriptional regulator, BadM/Rrf2
           family [Rhodobacter sphaeroides 2.4.1]
 gi|126103966|gb|ABN76644.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221160085|gb|ACM01065.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
 gi|332276036|gb|EGJ21351.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 144

 Score =  161 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 81/141 (57%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CAI+     R +++A AC  SE  L +++  L + G + TVRGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA++I + DV +  E +    ECF+  +  CPL  SC L   L  AL AF+ 
Sbjct: 61  CGGLALGRPAEKIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALAAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + S+  +V+  + ++ + 
Sbjct: 121 TLDKLSLRDMVQENTELEDLL 141


>gi|270158902|ref|ZP_06187558.1| rrf2 family protein [Legionella longbeachae D-4968]
 gi|289166311|ref|YP_003456449.1| DNA-binding transcriptional regulator [Legionella longbeachae
           NSW150]
 gi|269987241|gb|EEZ93496.1| rrf2 family protein [Legionella longbeachae D-4968]
 gi|288859484|emb|CBJ13439.1| DNA-binding transcriptional regulator [Legionella longbeachae
           NSW150]
          Length = 148

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +  +    I  I +A  IS   + KI+  L K G+++T RG+
Sbjct: 1   MQLTQFTDYSLRALIYITLRKES-CTIKDITDAYTISNNHMVKIIHNLAKLGLIKTSRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    + I +  ++   E  F +  CF   K +C +   C L  +L +A  AF  
Sbjct: 60  GGGILIAVQPETINLGKLIAQLEPHFDLVPCFNKEKANCCIAPVCRLKGILHEAQTAFMK 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  ++ N   +  + N
Sbjct: 120 VLERYTLADVLHNPKELSVLLN 141


>gi|23097747|ref|NP_691213.1| hypothetical protein OB0292 [Oceanobacillus iheyensis HTE831]
 gi|81747143|sp|Q8ETG9|NSRR_OCEIH RecName: Full=HTH-type transcriptional regulator nsrR
 gi|22775971|dbj|BAC12248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 147

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+L K TDY +RVL++  + +D     I +IAE   IS+  L K++  L K  +V T+RG
Sbjct: 1   MNLKKYTDYALRVLIFTGLKSDQELANIKEIAEVYQISQEHLRKVVHELTKMELVVTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L +PA +I I  +++  E  F + ECF      C +   C L  V+ KAL AFF
Sbjct: 61  RNGGIKLAKPASEINIGLLIRQLENDFVLLECFDKGTNHCVISPGCTLKHVINKALVAFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL +Y++E L++N   +  +  
Sbjct: 121 KVLEEYTLEDLIKNEEELLALMG 143


>gi|89900652|ref|YP_523123.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345389|gb|ABD69592.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 154

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY   H +    IS++A A  ISE  L KI   L  AG +ETVRG+
Sbjct: 1   MRLTTMSDYAMRLLMYVGQHPERLCTISEVARAYEISEAHLTKITHQLALAGWLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL      I +  VV++ E  F + EC  S    C L  SC LT ++  AL +F  
Sbjct: 61  GGGMRLAAAPQDIGLGAVVRSMEPDFTIVECLTSDTT-CQLTSSCHLTGIINGALQSFMQ 119

Query: 121 VLTQYSIECLVRNRSS 136
            L +Y++  L+   + 
Sbjct: 120 YLDRYTLADLLAPGTE 135


>gi|302672152|ref|YP_003832112.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
           B316]
 gi|302396625|gb|ADL35530.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
           B316]
          Length = 135

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+RV+   A H N     +  IA    I+  +L +I+  L KAG +E++RG
Sbjct: 1   MRISTKGRYGLRVMTDLAAHYNGEYISLKDIAVRLGITVKYLEQIVTALNKAGYLESMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +   +  + D+++  E +F   EC A    +CPL  SC   +  +   +   
Sbjct: 61  TNGGHRLAKDPSEYVVGDILRVMEGNFSPVECAAEGMSECPLSDSCASLNFWKGLDDVVN 120

Query: 120 DVLTQYSIECLVRNR 134
             +  Y+++ LV+ +
Sbjct: 121 QYIDSYTLDQLVKQK 135


>gi|28210751|ref|NP_781695.1| RRF2 family protein [Clostridium tetani E88]
 gi|28203189|gb|AAO35632.1| RRF2 protein family [Clostridium tetani E88]
          Length = 144

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A++  D P  I  I+E   ISE +L ++   L KA +++++RG
Sbjct: 1   MKLSTKGRYGVRAMIDLALNYGDIPISIKSISERQNISEYYLEQLFATLRKADLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R    I+I ++++  E    ++ C +  +  C  + SC    +  +   +  
Sbjct: 61  AQGGYLLSREPKDISIAEIIETLEGPVELSNCVSQGE--CENMDSCSTRLLWVRIKESID 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
           +V    +++ +V +   +      G
Sbjct: 119 NVTKTTTLQDMVDDYYKLNSCKGKG 143


>gi|229814919|ref|ZP_04445257.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
           13280]
 gi|229809406|gb|EEP45170.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
           13280]
          Length = 146

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H +D    + +IA    ISE +L  IL  LV+ G++  +RG
Sbjct: 1   MLVSTKGRYALRVMIDLAEHRSDGRTPLRKIAARQGISEKYLENILTTLVRHGLLSGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L R  +  TI +V++ TE S     C       C     C    V R+  +   
Sbjct: 61  KGGGYCLTREPEDFTIGEVLRLTEGSLCPVACLEHGHDGCDRAEHCRTVRVWRELDSLIE 120

Query: 120 DVLTQYSIECLVRNRS 135
           + L   ++  LVR+ S
Sbjct: 121 NYLNGVTLADLVRDES 136


>gi|37678938|ref|NP_933547.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|326423712|ref|NP_759435.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
           vulnificus CMCP6]
 gi|37197680|dbj|BAC93518.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319999071|gb|AAO08962.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
           vulnificus CMCP6]
          Length = 183

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 16  MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I+I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 76  PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 133

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   I+
Sbjct: 134 DFLNNITLGELMSDNEVIE 152


>gi|224825697|ref|ZP_03698801.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224601921|gb|EEG08100.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 150

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 77/142 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+MY A+  +    I++IA+A  IS   L K++  L + G + TVRG+
Sbjct: 1   MRLTAFTDYCLRVMMYSALAGERLVTINEIAQAYGISASHLTKVVFFLGQHGYLTTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     Q+ +  +V+A E    + ECF      C +  +C L +VL  A  AF+ 
Sbjct: 61  GGGMRLADDPQQVNLGKLVRAAETDNVLVECFDPQHSQCRIASACRLMNVLHAAQEAFYG 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L+++++  L+   + + +   
Sbjct: 121 ELSRHTLADLLVQPAGLGRALG 142


>gi|323486700|ref|ZP_08092021.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323692161|ref|ZP_08106404.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323400081|gb|EGA92458.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323503735|gb|EGB19554.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 145

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  A+  D   RI  I+    ISE +L +I+  L KAG V +VRG 
Sbjct: 1   MKVSTKGRYALRMMLDLALQGDEVVRIKDISLRQEISEKYLEQIVSVLKKAGYVNSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
           +GG  L     + T+  +++ TE S     C           C     C    +     +
Sbjct: 61  QGGYCLAGKPQEYTVGMILRLTEGSMAPVACVDTRMDGRGNTCSRAPGCTALKLWTMVDD 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A   V+ + ++  +V+    
Sbjct: 121 AVNGVIDKVTLADMVQWERE 140


>gi|121635429|ref|YP_975674.1| hypothetical protein NMC1725 [Neisseria meningitidis FAM18]
 gi|120867135|emb|CAM10902.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|254672733|emb|CBA06710.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325198879|gb|ADY94335.1| transcriptional repressor nsrR [Neisseria meningitidis G2136]
          Length = 147

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    + EC  S+  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLATPPDRINIGSVVRHLE-PMQLVECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|110834981|ref|YP_693840.1| transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110648092|emb|CAL17568.1| Transcriptional regulator, putative [Alcanivorax borkumensis SK2]
          Length = 143

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y ++ +D  P  I +IA+A  IS   + K+ Q LV+ G V+++RG
Sbjct: 1   MQLTTHTDYALRTLIYLSLRHDKLPTTIQEIADAYHISNNHVAKVAQTLVQLGYVQSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ + +PA++I + ++++ TE +  + +CF +    CP+  +C L + L KA  AF 
Sbjct: 61  RSGGLVMAKPANEINVGELIRQTE-NLKLLDCFGTES-SCPIDPACKLKNALGKAQAAFL 118

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L QY++     N   ++ + 
Sbjct: 119 QTLDQYNLADFTDNSDELRILL 140


>gi|160879964|ref|YP_001558932.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428630|gb|ABX42193.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           phytofermentans ISDg]
          Length = 143

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRVL+  A HN+     +  IA    ISE +L  I+  L K  ++ ++RG
Sbjct: 1   MKISTKGRYAIRVLIDLAEHNNGEFITLMDIAGRQEISEKYLEAIVSILSKNDLLISLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +  +Q T+  +++ TE S     C      +C     C    +  +      
Sbjct: 61  KGGGYKLAKAPEQYTVGSILRLTEGSLAPVSCLEKTPNNCTRATECRTLHMWEEFYKLTN 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D     +I  LV+   S
Sbjct: 121 DYFDGITIADLVKKNDS 137


>gi|218768796|ref|YP_002343308.1| hypothetical protein NMA2048 [Neisseria meningitidis Z2491]
 gi|121052804|emb|CAM09151.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319411035|emb|CBY91435.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           WUE 2594]
          Length = 147

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P ++I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLASPPERINIGAVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|290476020|ref|YP_003468917.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus bovienii SS-2004]
 gi|289175350|emb|CBJ82153.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus bovienii SS-2004]
          Length = 164

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I + +V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRNAGNIFVAEVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S+E LV+N+  +
Sbjct: 119 SFLSSISLEELVKNQEVL 136


>gi|289423544|ref|ZP_06425345.1| RRF2-family transcriptional regulator [Peptostreptococcus
           anaerobius 653-L]
 gi|289156046|gb|EFD04710.1| RRF2-family transcriptional regulator [Peptostreptococcus
           anaerobius 653-L]
          Length = 152

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ +   A+     P  +  IA+   IS+ +L +I   L KA +V++VRG
Sbjct: 1   MKLSTKGKYGLKAMFELALSKTGEPVSLKHIAKQQNISDQYLEQIFSSLKKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +IT+ D++K  E      +C    K  C    SC    V  K  ++  
Sbjct: 61  AQGGYMLSKDPKEITVADILKVLEGDMAFTDCLLD-KDACENFNSCATKYVWAKIKDSIE 119

Query: 120 DVLTQYSIECLVRNRSS 136
            V    S++ +V +  S
Sbjct: 120 QVTMAISLQDMVDDYES 136


>gi|313905754|ref|ZP_07839113.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469360|gb|EFR64703.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 173

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  YG+R L+  A + D        IA+   ISE +L ++++ L K+G+V +VRG
Sbjct: 1   MKLTTRGRYGLRALIDLAENQDGGAVSTQSIAQRQDISESYLEQLIRMLKKSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD+I++ DV+++ E S    EC A    DC     C    V ++  +   
Sbjct: 61  AGGGYRLSRAADEISVGDVLRSLEGSLEAVECPAIVGDDCSSADECVTKIVWKRINDGIA 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
             +    I  LV     +K
Sbjct: 121 QAVDSIMISELVDESMRLK 139


>gi|187736491|ref|YP_001878603.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426543|gb|ACD05822.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 147

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A H D     + +I+    ++  +L +I+  L+KAG V++ RG
Sbjct: 2   MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + T  D++K TE S     C ASH+  CP    C      R       
Sbjct: 62  KAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIE 121

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
           + L + ++E L   +  I   + AG
Sbjct: 122 NYLRRVTLEDLAEQQKEIGCDYGAG 146


>gi|320157286|ref|YP_004189665.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
 gi|81844780|sp|Q8DEY6|ISCR_VIBVU RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371155|sp|Q7MNG3|ISCR_VIBVY RecName: Full=HTH-type transcriptional regulator iscR
 gi|319932598|gb|ADV87462.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I+I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   I+
Sbjct: 119 DFLNNITLGELMSDNEVIE 137


>gi|328545191|ref|YP_004305300.1| transcriptional regulator superfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414933|gb|ADZ71996.1| Transcriptional regulator superfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 137

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/128 (46%), Positives = 91/128 (71%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA + + P++++ IA +  +SE  LFKI++ LV  G+++T+RGR GG+ L RPA++IT
Sbjct: 1   MYCAANPERPSKVADIAASFAMSETHLFKIMKVLVDGGLIKTIRGRNGGIVLARPANKIT 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I +VV+  EESF++AECF S + DCP++ +CG   VL +AL AF DVL   +IE +  NR
Sbjct: 61  IGEVVRVAEESFYLAECFNSGRKDCPILTTCGFNGVLHEALEAFMDVLDSKTIEDIAENR 120

Query: 135 SSIKKIFN 142
             ++K+ +
Sbjct: 121 KDLRKLLH 128


>gi|304396949|ref|ZP_07378829.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304355745|gb|EFM20112.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 147

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       I+++     +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDYGLRALIYLASLPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  PA QI I DVV+  E    + +C       C +  +C L   L  A+  F 
Sbjct: 61  KNGGIRLGMPARQIVIGDVVRKME-PLQLVDC-----ASCSITPACRLKQALHDAVQRFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L  Y++  LV   + + +I 
Sbjct: 115 QELDNYTLADLVEGNTPLYEII 136


>gi|15676349|ref|NP_273485.1| hypothetical protein NMB0437 [Neisseria meningitidis MC58]
 gi|254805531|ref|YP_003083752.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|7225662|gb|AAF40875.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254669073|emb|CBA07596.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
 gi|308388639|gb|ADO30959.1| hypothetical protein NMBB_0481 [Neisseria meningitidis alpha710]
 gi|316984950|gb|EFV63906.1| rrf2 family protein [Neisseria meningitidis H44/76]
 gi|325128852|gb|EGC51711.1| transcriptional repressor nsrR [Neisseria meningitidis N1568]
 gi|325130805|gb|EGC53539.1| transcriptional repressor nsrR [Neisseria meningitidis OX99.30304]
 gi|325132983|gb|EGC55660.1| transcriptional repressor nsrR [Neisseria meningitidis M6190]
 gi|325134903|gb|EGC57536.1| transcriptional repressor nsrR [Neisseria meningitidis M13399]
 gi|325137004|gb|EGC59601.1| transcriptional repressor nsrR [Neisseria meningitidis M0579]
 gi|325138971|gb|EGC61521.1| transcriptional repressor nsrR [Neisseria meningitidis ES14902]
 gi|325140951|gb|EGC63458.1| transcriptional repressor nsrR [Neisseria meningitidis CU385]
 gi|325142952|gb|EGC65310.1| transcriptional repressor nsrR [Neisseria meningitidis 961-5945]
 gi|325144975|gb|EGC67258.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240013]
 gi|325199624|gb|ADY95079.1| transcriptional repressor nsrR [Neisseria meningitidis H44/76]
 gi|325202752|gb|ADY98206.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240149]
 gi|325203544|gb|ADY98997.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240355]
 gi|325205505|gb|ADZ00958.1| transcriptional repressor nsrR [Neisseria meningitidis M04-240196]
 gi|325208748|gb|ADZ04200.1| transcriptional repressor nsrR [Neisseria meningitidis NZ-05/33]
          Length = 147

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|260881734|ref|ZP_05405118.2| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
           multacida DSM 20544]
 gi|260848283|gb|EEX68290.1| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
           multacida DSM 20544]
          Length = 154

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +  L   A+   +    +  IA +  +SE +L +++ PL +AGIV++VRG
Sbjct: 5   MKISTKGRYSVTALYELALRYGEGAVSLKSIATSQGLSENYLEQLMAPLRRAGIVKSVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L R   +ITI +++   E    + +C      S +  C    +C    V  K  
Sbjct: 65  AQGGYMLARDPKEITIGEIITTVEGPIALVDCLLTSAESAEQPCDRACACVTRGVWEKVC 124

Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
           ++  +VL   ++  L  +     K
Sbjct: 125 DSISNVLNHITLYDLCTDHPEQAK 148


>gi|304386705|ref|ZP_07368978.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
 gi|261391951|emb|CAX49413.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
           8013]
 gi|304339220|gb|EFM05301.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
          Length = 147

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D+I I  VV+  E    + EC  S+  +C +  SC LT +L  A+ +FF 
Sbjct: 61  GGGLRLAAPPDRINIGSVVRHLE-PMQLVECMGSNN-ECLITPSCRLTGILGGAMKSFFT 118

Query: 121 VLTQYSIECLVRNRS 135
            L  ++++ L+   +
Sbjct: 119 YLDGFTLQDLLNKPT 133


>gi|37527164|ref|NP_930508.1| DNA-binding transcriptional regulator IscR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|81833923|sp|Q7N223|ISCR_PHOLL RecName: Full=HTH-type transcriptional regulator iscR
 gi|36786598|emb|CAE15658.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 164

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I + +V+ A +ES     C       C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREG--CQGGDRCLTHALWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S+E LV N+  +
Sbjct: 119 GFLSSISLEELVNNQEVL 136


>gi|74317181|ref|YP_314921.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056676|gb|AAZ97116.1| Iron-sulphur cluster assembly transcription factor IscR
           [Thiobacillus denitrificans ATCC 25259]
          Length = 153

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+E   IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALRGGKNPVTLAGISERQDISLSYLEQLFSRLRRHALVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P   +++ D+++A +E     +C    K +C     C    +     +  +
Sbjct: 61  PGGGYYLAKPLADVSVADIIRAVDEPIDATQC--GGKENCHDEHRCLTHDLWVGLNSHIY 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   ++  LV  +   K+
Sbjct: 119 DYLDNVTLASLVAKQDECKE 138


>gi|296112360|ref|YP_003626298.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
 gi|295920054|gb|ADG60405.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
 gi|326568908|gb|EGE18977.1| transcriptional regulator NsrR [Moraxella catarrhalis BC1]
          Length = 177

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D+ +RVL+Y A   +ND   RI  IA++  IS+  L K++  L K  +V++ R
Sbjct: 1   MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97
           G+ GG+RL      I + ++V+ TE  FFV  CFA                         
Sbjct: 61  GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120

Query: 98  --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
                    C +  +C L  V  +A  AF  VL  Y++  ++ N   ++   +
Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEAAKAFLQVLDSYTLADIISNADELRHCLS 173


>gi|292489066|ref|YP_003531953.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|292900194|ref|YP_003539563.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291200042|emb|CBJ47167.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291554500|emb|CBA22046.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|312173222|emb|CBX81477.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 165

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + AD I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   ++  LV N+  +
Sbjct: 119 DFLNNITLAELVNNQEIL 136


>gi|209694305|ref|YP_002262233.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238]
 gi|226711609|sp|B6EGX4|ISCR_ALISL RecName: Full=HTH-type transcriptional regulator iscR
 gi|208008256|emb|CAQ78401.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 168

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 11/153 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL    D+I +  V+ A +ES    +C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYRLGLKPDEIAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECL--------VRNRSSIKKIFNAG 144
             L   S+  L        V +R +I    N G
Sbjct: 119 SFLDGISLGELMVDNEVQQVSDRQNIDAALNNG 151


>gi|225408021|ref|ZP_03761210.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
           DSM 15981]
 gi|225042454|gb|EEG52700.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
           DSM 15981]
          Length = 135

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A H  D    + +IA    ISE +L  +L+ LV+  ++  +RG
Sbjct: 1   MMISTRGRYALRVMLDLAEHCADGYIPLKEIAHRQDISEKYLEIVLKVLVRNNLLTGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + T+ ++++ TE S     C      +CP   +C    V +K      
Sbjct: 61  KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACADEGNTECPRRETCPSRPVWQKLDTLIN 120

Query: 120 DVLTQYSIECLVRNR 134
           D L   ++E L+++ 
Sbjct: 121 DYLDGITLEDLLKSP 135


>gi|323140322|ref|ZP_08075254.1| putative HTH-type transcriptional regulator IscR
           [Phascolarctobacterium sp. YIT 12067]
 gi|322415180|gb|EFY05967.1| putative HTH-type transcriptional regulator IscR
           [Phascolarctobacterium sp. YIT 12067]
          Length = 144

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AI H      +  +A+   IS+ +L +I+  L KAG V++ RG
Sbjct: 1   MKISTKGRYALRLMLDLAINHTGSYIPLKTVAQRQNISDKYLEQIIHQLSKAGFVQSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL    D+ T+ ++++  E S     C    K  C    SC    + +K   A  
Sbjct: 61  AQGGYRLAHTPDEYTVGEILRTVEGSLAPVSCLDC-KTPCDQFDSCITIGLYKKIQQAID 119

Query: 120 DVLTQYSIECLVRN 133
            V+   ++  ++ +
Sbjct: 120 GVVDHTTLHDMISD 133


>gi|259907700|ref|YP_002648056.1| DNA-binding transcriptional regulator IscR [Erwinia pyrifoliae
           Ep1/96]
 gi|224963322|emb|CAX54807.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283477554|emb|CAY73470.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
           12163]
 gi|310764792|gb|ADP09742.1| DNA-binding transcriptional regulator IscR [Erwinia sp. Ejp617]
          Length = 165

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + AD I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   ++  LV N+  +
Sbjct: 119 DFLNNITLAELVNNQEIL 136


>gi|156973367|ref|YP_001444274.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
 gi|189044753|sp|A7MU47|ISCR_VIBHB RecName: Full=HTH-type transcriptional regulator iscR
 gi|156524961|gb|ABU70047.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
          Length = 168

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+++   ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137


>gi|34581534|ref|ZP_00143014.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262919|gb|EAA26423.1| unknown [Rickettsia sibirica 246]
          Length = 142

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 66/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSVTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      + + D+++  E +  + ECF  +   C +  SC     +++A  AF  
Sbjct: 61  GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|260550152|ref|ZP_05824366.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406907|gb|EEX00386.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 157

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  L+
Sbjct: 119 DYLAKITLADLI 130


>gi|126728159|ref|ZP_01743975.1| Transcriptional regulator [Sagittula stellata E-37]
 gi|126711124|gb|EBA10174.1| Transcriptional regulator [Sagittula stellata E-37]
          Length = 171

 Score =  160 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 76/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+   RVLM+CA +     R +QIA AC  S   + +++Q L   G + T RGR
Sbjct: 1   MRLTTRTNLAARVLMFCAANPGTQVRSAQIAAACNASANHVARVVQQLQSEGFLSTRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RP   I+I  V +  E     AECF      CPL G+C L   L +AL+AF+ 
Sbjct: 61  TGGLQLARPPSAISIGTVFRLFETEIPFAECFDPVANTCPLTGTCRLKRYLTRALDAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + +++ L +    + ++ 
Sbjct: 121 ELDRVTLDDLTQGNCGLDRLL 141


>gi|301167694|emb|CBW27277.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 143

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IRVLMY  I+++     ++I+ A  IS   L KI+  L K   +++ +G 
Sbjct: 1   MKLTTYTDYSIRVLMYLGINSERLCTSTEISAAYGISRNHLSKIIHQLSKLKYIQSYKGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG+ L      I +  +++  E  F + ECF    +  C +  SC L S+L  +L  F 
Sbjct: 61  SGGITLLEKPKNINLRKLIEQVEPDFDIVECFNQDSVFPCKITPSCKLKSILNSSLIEFL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L +Y++  ++ N+  +K   
Sbjct: 121 KNLEKYTLADIIENKDELKSNL 142


>gi|260912948|ref|ZP_05919433.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
           dagmatis ATCC 43325]
 gi|260632938|gb|EEX51104.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
           dagmatis ATCC 43325]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHSKRGPVSLSDISERQHISLSYLEQLFAKLRRYGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P ++I++  V+ A  E+  V  C      DC     C   S+ ++      
Sbjct: 61  PGGGYQLGLPTNEISVGMVINAVNENIDVTRCHGRG--DCQEGIECLTHSLWKELSQRIE 118

Query: 120 DVLTQYSIECLVRN 133
           D L + ++  LV  
Sbjct: 119 DFLNEITLAELVDK 132


>gi|271501586|ref|YP_003334612.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
           Ech586]
 gi|270345141|gb|ACZ77906.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
           Ech586]
          Length = 164

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + + +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   +++ LV N+  +
Sbjct: 119 EFLNNITLDELVNNKEIL 136


>gi|332296703|ref|YP_004438625.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
 gi|332179806|gb|AEE15494.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
          Length = 152

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R ++  A+ N D    +  I+    IS  +L +I   L K G++ +VRG
Sbjct: 1   MKISTRGRYALRFMIDLALQNSDQFIALKDISGRQEISVKYLEQITSLLGKYGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG +L +PA Q TI ++++ TE +     C  +   +CP    C              
Sbjct: 61  QQGGYKLAKPASQYTIGEILRITEGNLAPVACLDTAVNECPRCNQCKTLPFWEGLAATIN 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++  L    S++  +
Sbjct: 121 SYLDSVTLADLAAQESAVAPV 141


>gi|188533165|ref|YP_001906962.1| DNA-binding transcriptional regulator IscR [Erwinia tasmaniensis
           Et1/99]
 gi|226711618|sp|B2VI31|ISCR_ERWT9 RecName: Full=HTH-type transcriptional regulator iscR
 gi|188028207|emb|CAO96065.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 165

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + AD I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   ++  LV N+  +
Sbjct: 119 DFLNNITLAELVNNQEIL 136


>gi|268593201|ref|ZP_06127422.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rettgeri DSM 1131]
 gi|291311249|gb|EFE51702.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rettgeri DSM 1131]
          Length = 165

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQSGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV+N+  +
Sbjct: 120 SFLSSISLDELVKNQEVM 137


>gi|294140361|ref|YP_003556339.1| Rrf2 family protein [Shewanella violacea DSS12]
 gi|293326830|dbj|BAJ01561.1| Rrf2 family protein [Shewanella violacea DSS12]
          Length = 167

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 15  MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRNGLVSSVRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C    K +C     C   S+         
Sbjct: 75  PGGGYRLGADAVDISVGMVVRAVDESVDATRC--QGKGNCQNGTRCLTHSLWGDLSKQIS 132

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 133 DFLNGISLAGLMSKRD 148


>gi|148265924|ref|YP_001232630.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146399424|gb|ABQ28057.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 154

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A ++   P +I  I+    IS  +L +I Q L + GI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQEISPRYLEQIFQSLKRKGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L +  ++IT+ D+++ATE    + +C  S   K +C   GSC   +V  +A   
Sbjct: 61  PQGGYCLAKNPEEITVKDIIQATEGDTMLVDCAGSKKKKGECAFDGSCVTQTVWEEANAK 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             ++    +++ L     ++
Sbjct: 121 LNELFASITLKTLCERGQAM 140


>gi|167836361|ref|ZP_02463244.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 165

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ +VV+ TE  F +  CFA       +C +   C L  V   A  A
Sbjct: 61  NGGLRLNAQSATLTVGEVVRKTENDFALVGCFAGEAESHRNCVIQSVCRLKGVFVAAREA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145


>gi|127513246|ref|YP_001094443.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
           PV-4]
 gi|126638541|gb|ABO24184.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
           PV-4]
          Length = 153

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C      +C     C   S+         
Sbjct: 61  PGGGYRLGFDASDISVGMVVRAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 119 DFLNGISLAGLMNKRD 134


>gi|167750161|ref|ZP_02422288.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
 gi|167656904|gb|EDS01034.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
 gi|291531912|emb|CBK97497.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
           70/3]
 gi|291556686|emb|CBL33803.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 145

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L+  A H  D    + +IA+   +S+ +L +I+  L K+ I+ T RG
Sbjct: 1   MKISTKGRYVLRMLIDLAEHQGDGYIPLKEIAQRQGVSKKYLEQIVPMLNKSDILRTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +  D+ T+ D+++ TE S     C  S  ++C     C   S+ +       
Sbjct: 61  FQGGYRLAKAPDKYTVGDILRLTEGSLAPVACLESGVVECDRSEHCATLSLWQGLYKVIN 120

Query: 120 DVLTQYSIECLVRN 133
           + L   +++ L+ +
Sbjct: 121 EYLDSVTLQDLIDS 134


>gi|119774429|ref|YP_927169.1| Rrf2 family protein [Shewanella amazonensis SB2B]
 gi|119766929|gb|ABL99499.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
           SB2B]
          Length = 153

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSAQGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   AD I++  VV A +ES     C  +   +C     C   S+         
Sbjct: 61  PGGGYRLGLEADDISVGMVVHAVDESVDATRCQGAG--NCQSGSRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 119 DFLNGISLAALMQKRD 134


>gi|255318956|ref|ZP_05360181.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262378308|ref|ZP_06071465.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter radioresistens SH164]
 gi|255303973|gb|EET83165.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262299593|gb|EEY87505.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter radioresistens SH164]
          Length = 157

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARTADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRN 133
           D L + ++  LV  
Sbjct: 119 DYLAKITLADLVAR 132


>gi|217970609|ref|YP_002355843.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217507936|gb|ACK54947.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 160

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A    D P  ++ IAE   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAARQGDGPVTLAGIAERQSISLSYLEQLFGKLRRHKLVNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  D+IT+ D++ A +E     +C    K +C     C    +        +
Sbjct: 61  PGGGYRLARAMDEITVADIIIAVDEPMDATQC--GGKENCHDDHVCMTHHLWSNLNQRIY 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+E LV+++
Sbjct: 119 AYLDSVSLEALVKHQ 133


>gi|167759052|ref|ZP_02431179.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
 gi|167663459|gb|EDS07589.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
          Length = 173

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +++  P  I+ I+    ISE +L +++  L KAG+V+++RG
Sbjct: 22  MKLSTKGRYGLRAIIDLARYSEEEPVSINNISIRQDISERYLEQLVALLKKAGLVKSIRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L + A++I++ DV++A E S    +C A      C     C    V +K  ++ 
Sbjct: 82  ATGGYVLAKRAEEISVGDVLRALEGSLEPVKCAAFYSDEGCMASDGCVTKYVWQKINDSI 141

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              + +  ++ LVR    I  
Sbjct: 142 NKTVDEIMLDELVRESKMINP 162


>gi|119371154|sp|Q9KTY3|ISCR_VIBCH RecName: Full=HTH-type transcriptional regulator iscR
          Length = 173

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   +  I+I  V+ A +ES    +C  + K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 119 DFLNNITLGELMMDNEVLE 137


>gi|322831758|ref|YP_004211785.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166959|gb|ADW72658.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 164

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + +  I +  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKDSGDIAVGAVITAVDESVDATRC--QGKEGCQNGERCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 GFLNNITLAELVNNQEILE 137


>gi|308187781|ref|YP_003931912.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
 gi|308058291|gb|ADO10463.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
          Length = 165

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + +D I++ +V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKASDTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L   ++  LV N+  +
Sbjct: 119 DFLNNITLAELVNNQEIL 136


>gi|117926344|ref|YP_866961.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610100|gb|ABK45555.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
           MC-1]
          Length = 157

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A H +  P  +++I+    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTAMLDLAQHANRGPVTLAEISNRQQISLSYLEQLFAKLRRGGLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A+QI++  +++A +E      C       C     C    +  +     +
Sbjct: 61  PGGGYQLDRGAEQISVAAIIRAVDEPIHATSCKDKGTEGCRRDTRCITHDLWARLGEHIY 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L   S+  L+R+ S++  +  A
Sbjct: 121 HYLESVSLAQLMRDGSALAMLGEA 144


>gi|294788820|ref|ZP_06754061.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
 gi|294483302|gb|EFG30988.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
          Length = 152

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL++ AI++D    I+ IA+A  IS+  L K++  LVK G + +VRG+
Sbjct: 1   MYLTQQTDYALRVLIFAAINDDSLVNIATIADAYQISKSHLMKVVTALVKGGFLHSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +I +  VV+  E    V ECF      C L   C L  +L   + AF  
Sbjct: 61  GGGLRLARPAVEICVGAVVRHME-HLTVVECFG-ENNQCILTPCCRLMDILHGGMKAFLS 118

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L  Y++  L+ NR + + ++ 
Sbjct: 119 HLDGYTLADLIGNRQAHELLYQ 140


>gi|326791918|ref|YP_004309739.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium lentocellum DSM 5427]
 gi|326542682|gb|ADZ84541.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           lentocellum DSM 5427]
          Length = 149

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++   +++      +  IAE   +SE +L +++  L K  +V + RG
Sbjct: 1   MKLSTKGRYGLQAMVDLGVYSKEKHISLKSIAERLSMSENYLEQLMALLKKNKLVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +P ++ITI +V++A E S    +C        C L G C   SV  K  ++ 
Sbjct: 61  AQGGYALAKPPEEITIGEVLRALEGSLAPTDCTCKDGDTHCFLDGKCVTKSVWEKIRDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V+   +++ L+ +   I +
Sbjct: 121 DRVVDNITLDQLMADYEKINE 141


>gi|281355615|ref|ZP_06242109.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281318495|gb|EFB02515.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 148

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R+L+  A++   D P  I +IA    ISE ++ +++  L KAG V +VR
Sbjct: 1   MKISTKGRYGLRILLDIALYRVGDKPRMIREIASNQEISEKYISRLIIELRKAGFVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R  + I++LDV++  E    + +C  S    C     C    +  +     
Sbjct: 61  GVNGGYTLTRKPEDISVLDVLETMEGPVAIVDCMNSSGEVCRRKSQCPTQRMWTEINQKI 120

Query: 119 FDVLTQYSIECLVR 132
                 Y+++ LV 
Sbjct: 121 RSAFAAYTLKDLVE 134


>gi|56475710|ref|YP_157299.1| rf2 family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56311753|emb|CAI06398.1| predicted transcriptional regulator,rf2 family [Aromatoleum
           aromaticum EbN1]
          Length = 211

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY  R L++  +        IS ++E   I    L KI+  L + G +E +RG
Sbjct: 57  MQLTRYTDYAFRTLIFLGLQKPAELVTISIVSEHFDIPRNHLVKIVNHLARLGYIEALRG 116

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPA +I +  VV+A EE+     C   H+  C ++ SC L  ++ +A  AF 
Sbjct: 117 KGGGIRLNRPATKINLRTVVEAVEETLTPINC---HEPTCRILPSCRLVGIMDEAQEAFL 173

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +YS+  L ++   ++K+ 
Sbjct: 174 AVLGKYSLSDLQQDPQRLEKLL 195


>gi|229826314|ref|ZP_04452383.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
           49176]
 gi|229789184|gb|EEP25298.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
           49176]
          Length = 153

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R ++  A+H D    +S IA    ISE +L +++  L KAGIV ++RG 
Sbjct: 1   MKISTKGRYGLRAVLDIAMH-DEAASVSSIAARQFISENYLERLIAMLKKAGIVNSLRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L RPA++I++ +V++A E      +C       C    +C    V ++  ++   
Sbjct: 60  QGGYVLARPAEEISVGEVLRALEGDLNPVDCSEIDGSLCEGSDTCVTKFVWKRISDSIKQ 119

Query: 121 VLTQYSIECLVRNRSSI 137
            +    I  L      +
Sbjct: 120 AVDNLMISELANEGKHL 136


>gi|59711223|ref|YP_203999.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
           transcriptional repressor [Vibrio fischeri ES114]
 gi|59479324|gb|AAW85111.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
           transcriptional repressor [Vibrio fischeri ES114]
          Length = 168

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+QI +  V+ A +ES    +C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYRLGLKAEQIAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+++  
Sbjct: 119 TFLDGITLGELMQDNE 134


>gi|303249012|ref|ZP_07335257.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302489598|gb|EFL49538.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 145

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H  + P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLLDIALHGGERPVRIQDIAKRRNISVKYLEQLIRALKKAGFINSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L  P ++I + DVV+A E    + EC  + +  C + G C    +  +A  + F
Sbjct: 61  PRGGHVLAMPPEEIRVGDVVRALESRPELTECVGNPET-CLIAGDCVTRRIWARATESLF 119

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L    I  ++ +++   +I  
Sbjct: 120 RELDAIRIADML-DQAQKAEILG 141


>gi|189425987|ref|YP_001953164.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter lovleyi SZ]
 gi|189422246|gb|ACD96644.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
          Length = 158

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A H    P +I  I+    IS  +L +I Q L KAGI+++ RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYHTGTAPAQIQDISRRQLISPRYLEQIFQNLKKAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH------KIDCPLVGSCGLTSVLRK 113
            +GG  L R  DQIT+L+V++ATE+   + +C          K +CP  G+C   +V + 
Sbjct: 61  PQGGYTLARTPDQITVLEVIRATEQDALLVDCAGQGKKTRRRKNECPFEGNCVTQTVWKD 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A +   ++  + ++E L +    +
Sbjct: 121 ANDLLAELFGKLTLETLCQRGQEM 144


>gi|119385748|ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119376343|gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 145

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 67/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDYG+RVLM  A   + P    QIA    IS+  L K++  L   G V + RGR
Sbjct: 1   MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +IT+  VV+  E  F + ECF +   +C L   C L   L  A  AF  
Sbjct: 61  SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120

Query: 121 VLTQYSIEC 129
            L + ++E 
Sbjct: 121 ELDRTTLED 129


>gi|39997666|ref|NP_953617.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39984558|gb|AAR35944.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|307635053|gb|ADI85329.2| transcriptional regulator, IscR family [Geobacter sulfurreducens
           KN400]
          Length = 145

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  ++H++  P  +  IA+   I   +L ++   L +  IVE+VRG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLHSEGKPVALRDIAQREDIPLNYLEQLFNRLRRGSIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +  I + ++V   EE      C    K  C    +C   SV         
Sbjct: 61  PGGGYLLARESSAILVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHSVWEMLGERIR 120

Query: 120 DVLTQYSIECLVRN 133
             L   ++E LVR+
Sbjct: 121 TFLDSITLEDLVRD 134


>gi|157961313|ref|YP_001501347.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
           ATCC 700345]
 gi|157846313|gb|ABV86812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
           ATCC 700345]
          Length = 153

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV+A +ES     C      +C     C   S+     +   
Sbjct: 61  PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 119 DFLNGISLAGLMHKRD 134


>gi|150015981|ref|YP_001308235.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902446|gb|ABR33279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 150

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A +    P  I  I++   +SE +L ++  PL +A ++ ++RG
Sbjct: 1   MKLSTKGRYGVRAMVDLASNYGGAPVSIKTISKRENLSEYYLEQLFSPLRRANMIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  LC+    IT+ D++   E    +A+C     ++C     C   +V  K   +  
Sbjct: 61  AQGGYVLCKAPKDITVGDIMTILEGPVEIADCIDG--VECDSSDCCATKAVWEKIKRSID 118

Query: 120 DVLTQYSIECLVRNRS 135
           DV+   +++ ++ +  
Sbjct: 119 DVMNSITLQDILDDYE 134


>gi|281355327|ref|ZP_06241821.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281318207|gb|EFB02227.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 148

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 79/137 (57%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R+L+  A+++ + P  I  I+E+  ISE ++ +++  L KAG+V+++RG
Sbjct: 1   MKISTKGRYGLRILLDLALNDSEKPRMIRDISESQHISEKYISRLIIELRKAGMVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG R+ R   +IT+LDVV+  E    + +C ++    CP + SC    +  +  N   
Sbjct: 61  SKGGYRISREPKEITLLDVVEVMEGPVSIVDCVSARDC-CPRIASCVTREIWTELNNQIR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L + +++ ++    +
Sbjct: 120 EALQKITLQEIIDRYRA 136


>gi|257465488|ref|ZP_05629859.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
 gi|257451148|gb|EEV25191.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           202]
          Length = 150

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  AIH  + P  ++ IA+   IS  +L ++   L + GIV +VRG
Sbjct: 1   MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +   +I++  ++ A  ES  V +C  S   +C    +C   ++  +      
Sbjct: 61  PGGGYKLEKSPKEISVGMIIAAVNESVDVTKCKGSG--NCRKDSTCLTHTLWERLEEQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   S+E LV+  S 
Sbjct: 119 VFLNTVSLEDLVKENSD 135


>gi|56461141|ref|YP_156422.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
           L2TR]
 gi|56180151|gb|AAV82873.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
           loihiensis L2TR]
          Length = 159

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+   + P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLRKHGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I++  V+ A +ES     C    K +C     C   S+     +   
Sbjct: 61  PGGGYRLGCAANDISVGAVIHAVDESIDATRC--QGKANCQGGERCLTHSLWEGLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           D L   ++  L++ +  +  + N
Sbjct: 119 DFLDGITLAELMK-KEDVGDVLN 140


>gi|315651843|ref|ZP_07904846.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium saburreum DSM 3986]
 gi|315485845|gb|EFU76224.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium saburreum DSM 3986]
          Length = 146

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  Y +++++  AI+ + P +I+Q++++  ISE +L +I+  L KA +V+++RG 
Sbjct: 1   MKISTRGRYALKMMVEFAINMETPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +P ++ T+ ++++ TE S    +C      +C     C   ++ +K  +A  +
Sbjct: 61  QGGYLLVKPVEEYTVGEILRLTEGSLAPVDCL-DGNGNCVHSDFCVTQNLFKKVEDAINN 119

Query: 121 VLTQYSIECLVRNRSSIKK 139
           V+   S++ LV +   I++
Sbjct: 120 VVDNISLKDLVTDELDIRR 138


>gi|212710633|ref|ZP_03318761.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
           30120]
 gi|212686714|gb|EEB46242.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
           30120]
          Length = 165

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV+N+  +
Sbjct: 120 SFLSSISLDELVKNQEVM 137


>gi|330817194|ref|YP_004360899.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
 gi|327369587|gb|AEA60943.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
          Length = 156

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+ ++  + I +I++A  IS+  L K++Q L + G V+TVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRSEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115
            GG+R+   + ++TI +VV+ATE  F +  CF           C +   C L  VL  A 
Sbjct: 61  NGGLRINANSGRLTIGEVVRATESDFALVGCFGGEGQGVEHRSCVIEPHCRLKGVLYAAR 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
            AFF  L +++I  L R  S +     
Sbjct: 121 EAFFSELDRHTIAELSRPASPLAAALG 147


>gi|302387033|ref|YP_003822855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197661|gb|ADL05232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y IR+++  A HN      +  IA+   ISE +L  I+  L K  ++ ++RG
Sbjct: 1   MKISTRGRYAIRLMIDLAEHNNGEYITLMDIAKRQEISEKYLEAIVSILSKNNLLVSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +  +  TI  +++ TE S     C      +C     C    +         
Sbjct: 61  KGGGYKLAKDPESYTIGSILRLTEGSLAPVACLDGENNNCSRSPECQTIDLWEGLNKLIN 120

Query: 120 DVLTQYSIECLVRN 133
           + L   +I  L++ 
Sbjct: 121 EYLDGVTIADLMKK 134


>gi|308446118|ref|XP_003087101.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
 gi|308262503|gb|EFP06456.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
          Length = 271

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A   D P  I++IAE   +SE  L KI+  + K G + T RG+
Sbjct: 1   MQLNKFTDYALRILMYIAPPKDVPYTIAEIAEDLHVSENHLVKIVHFMGKQGWLITTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     +  +  +V+  +    + EC   +   C L   CGL  +L +A+  F+ 
Sbjct: 61  GGGLRLNPDILEFRLGHIVRILQRDAQIVEC---NTPPCVLRPRCGLKGILDQAVEQFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L  Y++  ++       KI N+
Sbjct: 118 SLDHYTVADVLNAPPQHPKIVNS 140


>gi|253997038|ref|YP_003049102.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
           JLW8]
 gi|253983717|gb|ACT48575.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
           JLW8]
          Length = 168

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M LT +  + +  ++  AI+         P  ++ I+E   IS  +L ++   L + G+V
Sbjct: 1   MRLTTKGRFAVTAMLDLAINETKDALEAKPVTLAGISERQDISLSYLEQLFSRLRRQGLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
           +++RG  GG  L +   +I++ +++ A +E     +C      +C   G C    +    
Sbjct: 61  KSIRGPGGGYNLAKSHSEISVAEIIHAVDEQIDATQC--GGHENCRDEGRCMTHDLWSAL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIF 141
                + L   ++  +V ++ S +KI 
Sbjct: 119 NTKILEYLDGITLADMVASQKSGQKIL 145


>gi|226953086|ref|ZP_03823550.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|294650675|ref|ZP_06728029.1| HTH-type transcriptional regulator IscR family protein
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226836178|gb|EEH68561.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|292823466|gb|EFF82315.1| HTH-type transcriptional regulator IscR family protein
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 157

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +IT+L++++A  E+     C   HK +C     C    + +   +   
Sbjct: 61  ANGGYHLARNASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQDLSHHIA 118

Query: 120 DVLTQYSIECLVRN 133
           D L + ++  L+  
Sbjct: 119 DYLAKITLADLIAR 132


>gi|322514681|ref|ZP_08067709.1| iron-sulfur cluster assembly transcription regulator IscR
           [Actinobacillus ureae ATCC 25976]
 gi|322119379|gb|EFX91488.1| iron-sulfur cluster assembly transcription regulator IscR
           [Actinobacillus ureae ATCC 25976]
          Length = 150

 Score =  160 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV++VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLTDISERQAISLSYLEQLFAQLRREGIVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    +  +  +   
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEDQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV   S 
Sbjct: 119 VFLNTITLAELVEEHSD 135


>gi|300724150|ref|YP_003713467.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus nematophila ATCC 19061]
 gi|81322241|sp|Q8GLE9|ISCR_XENNA RecName: Full=HTH-type transcriptional regulator iscR
 gi|23345066|gb|AAN17744.1| putative iron-sulfur cluster regulator protein IscR [Xenorhabdus
           nematophila]
 gi|297630684|emb|CBJ91349.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Xenorhabdus nematophila ATCC 19061]
          Length = 164

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + +V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGRDAGRIFVAEVISAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSERIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   S+E LV+N+  +
Sbjct: 119 SFLGSISLEELVKNQEVL 136


>gi|261855536|ref|YP_003262819.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261836005|gb|ACX95772.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 150

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L ++TD+ +R LM  A     ++     I +I+E   IS   + K++  LV+   VE 
Sbjct: 1   MQLNQQTDFALRALMLLAQEEKNNSPRLLTIREISEFHRISRNHMMKVINTLVEQNFVEA 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG+ GG++L RP+++I + DVV+A E ++ + ECF+  + +C L+ SC L  +  +ALN
Sbjct: 61  KRGQNGGLKLNRPSNEIRVGDVVRALENNWNLVECFSPERQNCQLLPSCQLKYLFHRALN 120

Query: 117 AFFDVLTQYSIECL 130
           AFF+ L Q ++  +
Sbjct: 121 AFFEELDQCTLADI 134


>gi|237748047|ref|ZP_04578527.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379409|gb|EEO29500.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 144

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++    +  D    +  +     IS  +L +I   L K+G++ +VRG
Sbjct: 1   MKISTKGRYALRFMIDLVQNGGDSYTSLKDVTRRQTISPKYLEQIATSLSKSGLILSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R  ++ T+ D+++  E +F    C       CP   SC              
Sbjct: 61  PQGGYKLARSPEKYTVADILRPIEGTFACVACLEQTPNACPRYESCSTVHFWEGLHEVMT 120

Query: 120 DVLTQYSIECLV 131
           + L   ++  L 
Sbjct: 121 NYLNGTTLADLA 132


>gi|218708628|ref|YP_002416249.1| putative transcriptional regulator [Vibrio splendidus LGP32]
 gi|254806057|sp|B7VJS5|ISCR_VIBSL RecName: Full=HTH-type transcriptional regulator iscR
 gi|218321647|emb|CAV17599.1| Predicted transcriptional regulator [Vibrio splendidus LGP32]
          Length = 173

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I +  V+ A +ES    +C      DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGAEASDIAVGTVIAAVDESVDATKCHGR--ADCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  L+++   ++
Sbjct: 119 SFLNDITLGELMKDNEVLE 137


>gi|302344575|ref|YP_003809104.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
           DSM 2075]
 gi|301641188|gb|ADK86510.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii
           DSM 2075]
          Length = 151

 Score =  159 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R ++  A+HND  P  +  +A    IS  +L ++L PL  AG+V++VRG
Sbjct: 1   MKLSTRGRYGVRAMLELAMHNDDGPVPLRNLALRQEISAKYLEQLLIPLKGAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L      I++ D+V++ E      EC    +  C  VG C +  V  +      
Sbjct: 61  ARGGYQLAADPKDISLYDIVRSLEGPLAPVECVQDAEY-CQRVGGCTVHLVWGEMGQLLV 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L++ S+  +V  +    +I
Sbjct: 120 DFLSKMSLADMVVRQREKDQI 140


>gi|119773198|ref|YP_925938.1| Rrf2 family protein [Shewanella amazonensis SB2B]
 gi|119765698|gb|ABL98268.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
           SB2B]
          Length = 151

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR LMY A+  +     RI++I E   +S   + KI+  L KAG ++TVR
Sbjct: 1   MQLTRYTDFGIRTLMYMAVQPERTALFRIAEITEVFDLSPNHVSKIIHHLGKAGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL +PA +I +  +V+  E S     C    K  C L+ +C L  VL  A+ A+
Sbjct: 61  GKAGGFRLAKPAAEINLGALVRELEHSLAPINCS---KPVCRLLPACQLKGVLANAVQAY 117

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             VL QY +  +V NR  +  + 
Sbjct: 118 LAVLDQYQLADIVTNRDELLALL 140


>gi|254473748|ref|ZP_05087143.1| protein Aau3 [Pseudovibrio sp. JE062]
 gi|211957134|gb|EEA92339.1| protein Aau3 [Pseudovibrio sp. JE062]
          Length = 142

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/128 (50%), Positives = 91/128 (71%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA + D P+++++IA +  +SE  LFKI++ LV A +++T+RGR GG+ L RPA+QI+
Sbjct: 1   MYCAANPDKPSKVAEIAASFSMSETHLFKIMKVLVDADLMKTIRGRNGGIVLPRPAEQIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +  VV+ATEESF +AECF S + DCPLV  CG  SVL +AL AF  VL + +I  L  NR
Sbjct: 61  VGQVVRATEESFLLAECFDSGRQDCPLVNHCGFNSVLHEALEAFLGVLDKCTIADLADNR 120

Query: 135 SSIKKIFN 142
           +SI+ +  
Sbjct: 121 ASIRHLLQ 128


>gi|294677259|ref|YP_003577874.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|294476079|gb|ADE85467.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 168

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CA++ D   R  +IAEAC  SE  L +++  L + G +ET RGR
Sbjct: 1   MRLTTRTNLAMRTLMFCAVNGDRIVRKHEIAEACNASENHLAQVVNTLAQRGFIETQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RP DQI + +V++  E      EC       CPL  +C     +  AL AF+ 
Sbjct: 61  SGGLRLARPMDQIGVGEVLRTFEAVLPFVECLDGDNNTCPLCDACRFRDAIEAALEAFYT 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            + ++S+  LVR+  +++ + 
Sbjct: 121 AMDRHSVGDLVRDNDALEHLL 141


>gi|160895967|ref|YP_001561549.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
           SPH-1]
 gi|160361551|gb|ABX33164.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
           SPH-1]
          Length = 146

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A H      I++IA+A  ISE  L K+   L   G + TVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL      I + DVV+  E    + ECF  +    C L   C L  VL  AL++F 
Sbjct: 61  GGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFM 120

Query: 120 DVLTQYSIECLVRNRSSI 137
             L  +++  L+   +S+
Sbjct: 121 AHLDGFTLADLLPAPASL 138


>gi|269103288|ref|ZP_06155985.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163186|gb|EEZ41682.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 173

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  D P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A++I +  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGDDANKIAVGMVIAAVDESVDATKC--QGKGDCQGGARCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+ +  
Sbjct: 119 GFLNNITLGELMEDND 134


>gi|170726128|ref|YP_001760154.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811475|gb|ACA86059.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC
           51908]
          Length = 153

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAMHSTAGPVPLADISERQGISLSYLEQLFAKLRKQGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A +I++  VV+A +ES     C      +C     C   S+         
Sbjct: 61  PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+  R 
Sbjct: 119 DFLNGISLAGLMTKRD 134


>gi|94501139|ref|ZP_01307662.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
           sp. RED65]
 gi|94426715|gb|EAT11700.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
           sp. RED65]
          Length = 160

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH  + P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHGQHKPVSLNDISGRQGISLSYLEQLFAKLRRCDLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R   +I+I  VV A  ES     C    K DC     C    + +       
Sbjct: 61  PGGGYRLSREGSEISIAQVVDAVNESMDATRC--RGKGDCQEGDQCLTHHLWQDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  SI  LV  +  +
Sbjct: 119 AFLSDISIADLVSRKEIL 136


>gi|307256986|ref|ZP_07538762.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261420|ref|ZP_07543093.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306864470|gb|EFM96377.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868877|gb|EFN00681.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 150

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    +  +      
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV   S 
Sbjct: 119 VFLNTITLAELVEEHSD 135


>gi|262274800|ref|ZP_06052611.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
 gi|262221363|gb|EEY72677.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
          Length = 174

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H++  P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSEAGPVPLADISERQGISLSYLEQLFSRLRKAGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A++I +  V+ A +ES    +C    K DC     C   ++ R       
Sbjct: 61  PGGGYRLGVSANEIAVGMVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSARIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+++  
Sbjct: 119 SFLNDITLGELMQDNE 134


>gi|315925094|ref|ZP_07921311.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621993|gb|EFV01957.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 145

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H D     +  IA    IS+ +L +I+  +    I+ T RG
Sbjct: 1   MKISTKGRYALRMMLDLAYHQDEGYIALKDIARRQNISKKYLEQIVSLMRGPDILATSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG RL RP    T+ ++++ TE S     C       CP    C    V +       
Sbjct: 61  YRGGYRLARPPRDYTVGEILRLTEGSLAPVACLEEGADKCPRAAGCETLPVWQGLYTRIT 120

Query: 120 DVLTQYSIECLVRN 133
           D L   +++ ++ +
Sbjct: 121 DYLDSLTLQDIIDH 134


>gi|32034036|ref|ZP_00134280.1| COG1959: Predicted transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208408|ref|YP_001053633.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae L20]
 gi|165976351|ref|YP_001651944.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190150259|ref|YP_001968784.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251397|ref|ZP_07337574.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252975|ref|ZP_07339130.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245844|ref|ZP_07527929.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247920|ref|ZP_07529954.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250175|ref|ZP_07532134.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252558|ref|ZP_07534453.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254817|ref|ZP_07536643.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259259|ref|ZP_07540988.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263598|ref|ZP_07545212.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097200|gb|ABN74028.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876452|gb|ABY69500.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189915390|gb|ACE61642.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648166|gb|EFL78367.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649751|gb|EFL79930.1| putative HTH-type transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853204|gb|EFM85424.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855570|gb|EFM87739.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857806|gb|EFM89903.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859963|gb|EFM91981.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862188|gb|EFM94156.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866626|gb|EFM98485.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871061|gb|EFN02791.1| HTH-type transcriptional regulator iscR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 150

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C    +  +      
Sbjct: 61  PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV   S 
Sbjct: 119 VFLNTITLAELVEEHSD 135


>gi|325122066|gb|ADY81589.1| hypothetical protein BDGL_001003 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 157

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + S+  L+
Sbjct: 119 DYLAKISLADLI 130


>gi|327394815|dbj|BAK12237.1| Rrf2 family protein YfhP [Pantoea ananatis AJ13355]
          Length = 165

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A+ I + +V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   ++  LV N+  +
Sbjct: 119 EFLNNITLAELVNNQEIL 136


>gi|126738163|ref|ZP_01753884.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
 gi|126720660|gb|EBA17365.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
          Length = 151

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 73/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ A H D      +IA+   +    L KI Q L   G VE++RGR
Sbjct: 1   MQISKFSDYALRILIHLATHEDGLMSTREIAQMQKLPFNHLAKISQWLTHEGYVESLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P + I+I  +++ +E    + EC       C +  +CGL  +L +A   FF 
Sbjct: 61  NGGMRLALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILNEAQEMFFT 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   ++  ++     ++ +  A
Sbjct: 121 TLDSKTLHDVLSGNGGMRNLLRA 143


>gi|91225151|ref|ZP_01260373.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
 gi|91190094|gb|EAS76365.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
          Length = 168

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137


>gi|226226792|ref|YP_002760898.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226089983|dbj|BAH38428.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 152

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 76/143 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +D  +R LM   +  D    +  IA    +S   L KI+Q L + G VETVRGR
Sbjct: 1   MRLTRFSDNALRCLMVLGLEPDALIPVHSIAVRMNMSHEHLVKIVQRLAELGYVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+  +V+ TE++  + ECF      CP+  +C L  +L +AL+AF  
Sbjct: 61  NGGVRLVRSPQHITLGALVRETEDNLALVECFEPESNTCPIAPACVLARMLDEALSAFLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL  Y++   ++    +  +  A
Sbjct: 121 VLDGYTLADALKPGRKLTTLMRA 143


>gi|221066727|ref|ZP_03542832.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|220711750|gb|EED67118.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
          Length = 154

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A   +    IS+I++A  ISE  + K+   L + G ++TVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVAQRPERLCTISEISQAYGISEAHMMKVTHQLAQQGWIKTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL     QI +  VV+  E  F + ECF +    C L G C LT +L+ AL++F  
Sbjct: 61  GGGMRLAHEPQQINLGAVVRGMEPDFALVECFTNDN-RCMLAGDCRLTGLLQGALHSFMA 119

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L  +++  L+  ++S  ++
Sbjct: 120 HLDGFTLATLLIPQASANEL 139


>gi|309388970|gb|ADO76850.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium
           praevalens DSM 2228]
          Length = 148

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A H +     I +I+E   ISE +L ++   L KA +V++VRG
Sbjct: 1   MRVSTKGRYGLRAMVDLAEHEEGEAIPIRKISERQDISEQYLEQLFATLRKAELVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + I++ D++   E      +C       C  +  C +  +  +  +A  
Sbjct: 61  AHGGYMLNHEPEDISVADIITTLEGPIAPVDCVIESDF-CNYIDKCVIHGLWEELADAIN 119

Query: 120 DVLTQYSIECL 130
            V+   ++  L
Sbjct: 120 GVIENMTLSDL 130


>gi|331005918|ref|ZP_08329266.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989]
 gi|330420274|gb|EGG94592.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989]
          Length = 173

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+D  P  +S+I++   IS  +L ++   L KA +V ++RG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHSDKGPVSLSEISKRQEISLSYLEQLFSKLRKADLVASIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  D I I  +V A  ES     C    K +C     C    +     +   
Sbjct: 61  PGGGYQLGRTLDTIYIAQIVDAVNESIDATNC--GGKGNCQQGEVCLTHHLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   S+  LV  R 
Sbjct: 119 QFLNSISLAKLVERRD 134


>gi|28897369|ref|NP_796974.1| hypothetical protein VP0595 [Vibrio parahaemolyticus RIMD 2210633]
 gi|81839883|sp|Q87S29|ISCR_VIBPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|28805581|dbj|BAC58858.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|328472608|gb|EGF43471.1| hypothetical protein VP10329_12296 [Vibrio parahaemolyticus 10329]
          Length = 168

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137


>gi|262278963|ref|ZP_06056748.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259314|gb|EEY78047.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 157

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKANCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + S+  L+
Sbjct: 119 DYLAKISLADLI 130


>gi|261867572|ref|YP_003255494.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293390585|ref|ZP_06634919.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412904|gb|ACX82275.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951119|gb|EFE01238.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 157

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ ND P  +S I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALYANDGPVSLSDISERQHISLSYLEQLFAKLRRHNVVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L     +I+I  ++ A  E+     C      +C     C   S+  K      
Sbjct: 61  PGGGYKLGFAPSEISIAMIITAVNENIETTACLG--HGNCSNGSECLTHSLWEKLSQRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L++ ++E LV  +   ++
Sbjct: 119 DFLSEITLEELVLQQKGRQQ 138


>gi|56461491|ref|YP_156772.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
           L2TR]
 gi|56180501|gb|AAV83223.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
           loihiensis L2TR]
          Length = 150

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K TDYG+RVLMY A   D     I +++    +    L K++  L K G++ET RG
Sbjct: 1   MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLGKEGLIETRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L      I +  V++  E   +  +C   HK +C +   C L  V+ +    F+
Sbjct: 61  KNGGFLLAIEPADIRLDKVIRRLEGDEYWVDC---HKPECAIFPVCELKHVINQGKETFY 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           D L  Y++  LV N + I++ + 
Sbjct: 118 DFLAGYTLASLVSNDAQIREFWG 140


>gi|153835382|ref|ZP_01988049.1| Rrf2 family protein [Vibrio harveyi HY01]
 gi|308126079|ref|ZP_05907695.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AQ4037]
 gi|148868104|gb|EDL67270.1| Rrf2 family protein [Vibrio harveyi HY01]
 gi|308106690|gb|EFO44230.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AQ4037]
          Length = 174

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 7   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 67  PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 125 DFLNNITLGELMTDNEVLE 143


>gi|153838057|ref|ZP_01990724.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
 gi|308094348|ref|ZP_05888684.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AN-5034]
 gi|308095615|ref|ZP_05907096.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           Peru-466]
 gi|308125639|ref|ZP_05776393.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           K5030]
 gi|149748524|gb|EDM59383.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
 gi|308086941|gb|EFO36636.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           Peru-466]
 gi|308092986|gb|EFO42681.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           AN-5034]
 gi|308113048|gb|EFO50588.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           K5030]
          Length = 174

 Score =  158 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 7   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 67  PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 125 DFLNNITLGELMTDNEVLE 143


>gi|289208014|ref|YP_003460080.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thioalkalivibrio sp. K90mix]
 gi|288943645|gb|ADC71344.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
           K90mix]
          Length = 164

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++++A    +S  +L ++   L + G+V + RG
Sbjct: 1   MKLTTKGRYAVTAMLDVAMHTENSPVSLAEVARRQKLSLSYLEQLFSRLRRQGLVNSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  + I++ D++ A +E   V  C    K +C     C    +        +
Sbjct: 61  PGGGYALSREPEGISVADIIVAVDEPVDVTRC--GGKANCNSESRCLTHDLWTDLSQQLY 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L+  ++  ++    +
Sbjct: 119 DFLSSRTLADVLERHQA 135


>gi|224823937|ref|ZP_03697046.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224604392|gb|EEG10566.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 160

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+ H + P  ++ I+E   IS  +L ++   L +A +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALRHGNGPVTLAGISERQSISLSYLEQLFGKLRRAELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A+QI++ D++ A +E     +C      +C     C    +        F
Sbjct: 61  PGGGYTLAKSAEQISVADIITAVDEPVDATQCGGRE--NCHDNHRCMTHDLWTNLNATIF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L++ ++  LV  + +
Sbjct: 119 DYLSKVTLFSLVAEQHA 135


>gi|77361587|ref|YP_341162.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876498|emb|CAI87720.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 163

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD I++ DV+ A +ES     C  S  I C     C   ++  +      
Sbjct: 61  PGGGYLLGRKADAISVGDVINAVDESVDATRCQKSD-IGCQSGMRCLTHNLWSELSARIE 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   ++  LV  +S +K+I
Sbjct: 120 EFLDNITLAELVE-KSDVKEI 139


>gi|222054501|ref|YP_002536863.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221563790|gb|ACM19762.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 154

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A ++   P +I  I+    IS  +L +I Q L K GI+ + RG
Sbjct: 1   MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQNISPRYLEQIFQALKKKGILNSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
            +GG  L R  D+IT+ D+V+ATE    + +C    K    C   G C   +V  +A   
Sbjct: 61  PQGGYCLARNPDEITVRDIVQATEGDTLLVDCSGGKKNKQHCGFDGGCVTQTVWDEASRE 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +    +++ L     ++
Sbjct: 121 LNRLFGSITLKTLCDRGHAM 140


>gi|294084466|ref|YP_003551224.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664039|gb|ADE39140.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 149

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 75/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R LM  A++ +    IS+IAE   IS+  L K++  L   G + +  GR
Sbjct: 1   MRLRLQTDYALRALMCLAVNTERRVMISEIAEQQSISKNHLIKVIHRLTGLGFINSQPGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA QI I D+++  E      +CF      C L+  C L +VL  AL+AF+ 
Sbjct: 61  SGGLWLSRPAAQINIGDLIRQLEADSVFLDCFEGGAGRCRLIPQCQLKAVLADALDAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL ++++  +      ++ + 
Sbjct: 121 VLDRFTLAQVTSRPDELRALL 141


>gi|293608203|ref|ZP_06690506.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828776|gb|EFF87138.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 161

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 5   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 65  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 122

Query: 120 DVLTQYSIECLV 131
           D L + S+  L+
Sbjct: 123 DYLAKISLADLI 134


>gi|299770352|ref|YP_003732378.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter sp. DR1]
 gi|298700440|gb|ADI91005.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter sp. DR1]
          Length = 157

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + S+  L+
Sbjct: 119 DYLAKISLADLI 130


>gi|262370470|ref|ZP_06063796.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
 gi|262314812|gb|EEY95853.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
          Length = 157

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V ++RG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L V++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARRADEITVLAVIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + ++  LV  R +++K+
Sbjct: 119 DYLAKITLADLVA-RDNVQKV 138


>gi|251788733|ref|YP_003003454.1| DNA-binding transcriptional regulator IscR [Dickeya zeae Ech1591]
 gi|247537354|gb|ACT05975.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 164

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + + +I +  V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +++ LV N+  +
Sbjct: 119 GFLNNITLDELVNNKEIL 136


>gi|46201636|ref|ZP_00054636.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 140

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++    N     I++IAE   IS+  L K++  L ++G +ETVRG+
Sbjct: 1   MRLTLHTDYALRVLVHVGRQNGDLVTINEIAERYGISKNHLTKVVHQLGRSGYLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  + + +   ++ TE+ F +  C      D C L   C     L   L+AFF
Sbjct: 61  YGGVRLLRQPEDVKLGQFIRETEDDFALVRCMRCDSPDECRLNAGCIARDALSSGLSAFF 120

Query: 120 DVLTQYSIECLVRNRSS 136
            VL  Y++  ++ N   
Sbjct: 121 KVLDGYTLADMLDNERQ 137


>gi|229828909|ref|ZP_04454978.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
           14600]
 gi|229792072|gb|EEP28186.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
           14600]
          Length = 144

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A +N   P  I  IA    ISE +L +I+  L +AG V +VRG
Sbjct: 1   MKISTKGRYALRLMLDLAAYNTGEPISIKDIARRQAISEKYLEQIISVLNRAGYVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   + T+  + + TE S    E     K D           V RK   A  
Sbjct: 61  AGGGYLLTRDPKEYTVGMIFRLTEGSLAPVEGLEDGKPDLADHPELVTYDVYRKIYEAVN 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            V+   ++  LV ++  +   +
Sbjct: 121 QVVDHITLADLVDHQRQLADNY 142


>gi|149190102|ref|ZP_01868379.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
 gi|148836132|gb|EDL53092.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
          Length = 168

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGAEASDIAIGTVIAAVDESVDATKCAG--KGDCQGGTRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 119 DFLNNITLGELMVDNEVLE 137


>gi|240949678|ref|ZP_04754013.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
 gi|240295936|gb|EER46612.1| putative HTH-type transcriptional regulator [Actinobacillus minor
           NM305]
          Length = 150

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  AIH  + P  ++ IA+   IS  +L ++   L + GIV +VRG
Sbjct: 1   MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +    I++  ++ A  E+  V +C  S   +C     C   ++  +      
Sbjct: 61  PGGGYKLEKSPKDISVGMIIAAVNENVDVTKCKGSG--NCRKDSKCLTHTLWERLEEQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   S+E LV+  S 
Sbjct: 119 VFLNTVSLEDLVKENSD 135


>gi|299131984|ref|ZP_07025179.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
 gi|298592121|gb|EFI52321.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
          Length = 149

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 3/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +DY +R+LMY A+  +     I + AEA  IS   L K+   L +AG ++ VRG
Sbjct: 1   MRLTNFSDYALRILMYAAVVPDGRLITIEETAEAYGISRAHLMKVANQLTRAGYMKAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L +  D+I + DV++ATE  F + EC  +    C +   C L   L +AL AF 
Sbjct: 61  RSGGLTLAKRPDRIRLSDVLRATEPDFALVECMTADN-RCMISPRCRLRGALNEALAAFL 119

Query: 120 DVLTQYSIECLV-RNRSSIKKIFNAG 144
           + L  Y++  L+   + S + +   G
Sbjct: 120 ETLDGYTLADLILSPKDSARPLLAIG 145


>gi|15807088|ref|NP_295817.1| rrf2 protein [Deinococcus radiodurans R1]
 gi|6459891|gb|AAF11645.1|AE002045_5 rrf2 protein [Deinococcus radiodurans R1]
          Length = 197

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  +AE   +S+ +L +I   L +AG ++++RG 
Sbjct: 46  MWVSTKAQYGLRALVEIGRRGGEAVPLKDVAERQGLSQHYLEQIASNLRRAGFIKSIRGA 105

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA+ I   DVV A E S     C     + C     CG  ++  +   A  D
Sbjct: 106 HGGYRLARPAEAINAYDVVTALEGSIAPVSCVEDDHV-CDSRNVCGTQNLWFRVDAALRD 164

Query: 121 VLTQYSIECLVRN 133
           VL   ++  L+  
Sbjct: 165 VLGNTTLADLIAE 177


>gi|167745701|ref|ZP_02417828.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
 gi|317472704|ref|ZP_07932019.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|167655013|gb|EDR99142.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
 gi|316899881|gb|EFV21880.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 165

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A+  +  P  +S I+E   IS  +L ++L  L KAG+V+++RG
Sbjct: 14  MKLSTKGRYGLRAIVDIAVFGEKEPAAVSAISERQDISIRYLEQLLSKLKKAGLVKSIRG 73

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L   A+ I++ DV++A E      +C      +  C     C   +V ++  ++
Sbjct: 74  AQGGYVLAGNAEDISVGDVLRALEGDLTPVDCTELTDTEETCSGSKYCVTKTVWKRINDS 133

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               +    ++ L     ++++
Sbjct: 134 IAKTVDSIYLDELADEARAVQQ 155


>gi|292491985|ref|YP_003527424.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus halophilus Nc4]
 gi|291580580|gb|ADE15037.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus halophilus Nc4]
          Length = 166

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L K G+V++ RG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHYEQGPITLADISRRQGISLSYLEQLFARLRKKGLVDSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A++I+++DV+ A +ES     C      +C     C    +        +
Sbjct: 61  PGGGYRLSREAEKISVIDVISAVDESVDATRCRGLK--NCQGDQRCLTHELWEDLSRQIY 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L++ ++  LV+ R 
Sbjct: 119 EFLSRITLGELVQRRD 134


>gi|114563595|ref|YP_751108.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334888|gb|ABI72270.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           frigidimarina NCIMB 400]
          Length = 153

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSATGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I++  VV A +ES     C    K +C     C   S+         
Sbjct: 61  PGGGYRLGLEAVDISVGMVVHAVDESVDATRC--QGKGNCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 119 DFLDGISLAGLMQKRD 134


>gi|295102114|emb|CBK99659.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii L2-6]
          Length = 149

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQQLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +     T  ++++A E S     C  S   +CP+   C          +   
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSDQCFTLPFWAGLDDVIN 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             +   ++E L ++  ++K+
Sbjct: 121 QYIDSVTLEQLAQSLPAVKE 140


>gi|221133857|ref|ZP_03560162.1| transcriptional regulator, BadM/Rrf2 family protein [Glaciecola sp.
           HTCC2999]
          Length = 160

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  +  I+    IS  +L ++   L K  +VE++RG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQGPVSLYDISMRQEISLSYLEQLFSKLRKQHLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PA++I + +V+ A  ES    +C  + K DC     C   ++ +   +   
Sbjct: 61  PGGGYRLGKPANEIAVGEVIAAVNESIDATKC--NGKADCQGGEKCLTHNLWQDLSDRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+  + 
Sbjct: 119 KFLDNITLGELMAKQD 134


>gi|88858497|ref|ZP_01133139.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas
           tunicata D2]
 gi|88820114|gb|EAR29927.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas
           tunicata D2]
          Length = 162

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  L+  A+H +  P  +++I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTALLDVALHTNVGPVCLAEISERQEISLSYLEQLFARLRKQGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I++ DV+ A +ES     C       C     C   S+         
Sbjct: 61  PGGGYLLGKEASEISVGDVISAVDESVDATRCHGEGG--CQKGVRCLTHSLWSDLSIRIE 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   ++  LV  R 
Sbjct: 119 DFLNNITLAELVAKRD 134


>gi|148825338|ref|YP_001290091.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE]
 gi|260582529|ref|ZP_05850319.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
           influenzae NT127]
 gi|148715498|gb|ABQ97708.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE]
 gi|260094340|gb|EEW78238.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
           influenzae NT127]
          Length = 150

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    + +       
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|253988842|ref|YP_003040198.1| DNA-binding transcriptional regulator IscR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780292|emb|CAQ83453.1| hth-type transcriptional regulator iscr [Photorhabdus asymbiotica]
          Length = 164

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + +V+ A +ES     C    K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAGKIVVAEVIFAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSDRIT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV N+  +
Sbjct: 119 SFLSSISLKELVNNQEVL 136


>gi|113970076|ref|YP_733869.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
 gi|114047317|ref|YP_737867.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
 gi|117920724|ref|YP_869916.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
 gi|126174611|ref|YP_001050760.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS155]
 gi|153000907|ref|YP_001366588.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS185]
 gi|160875615|ref|YP_001554931.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS195]
 gi|217973136|ref|YP_002357887.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
           OS223]
 gi|304408985|ref|ZP_07390606.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|307302988|ref|ZP_07582743.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
 gi|113884760|gb|ABI38812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
 gi|113888759|gb|ABI42810.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
 gi|117613056|gb|ABK48510.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
 gi|125997816|gb|ABN61891.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS155]
 gi|151365525|gb|ABS08525.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS185]
 gi|160861137|gb|ABX49671.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS195]
 gi|217498271|gb|ACK46464.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS223]
 gi|304352806|gb|EFM17203.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS183]
 gi|306913348|gb|EFN43770.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           BA175]
          Length = 153

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I++  VV A +ES     C      +C     C   S+         
Sbjct: 61  PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 119 DFLDGISLAGLMQKRD 134


>gi|315267803|gb|ADT94656.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
           OS678]
          Length = 173

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 21  MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I++  VV A +ES     C      +C     C   S+         
Sbjct: 81  PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 138

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 139 DFLDGISLAGLMQKRD 154


>gi|227498969|ref|ZP_03929106.1| transcriptional regulator [Acidaminococcus sp. D21]
 gi|226904418|gb|EEH90336.1| transcriptional regulator [Acidaminococcus sp. D21]
          Length = 141

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A++  +    I  ++E   ISE +L +I+  L +A +V++ RG
Sbjct: 1   MKISTKGRYALRLMLDLAMNGKENFVPIRSVSERQEISEKYLEQIITALSRAKLVKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L +  ++ T  ++++A E S     C       C     C   ++ ++   A  
Sbjct: 61  AQGGYKLVKAPEEYTTGEILRAVEGSLAPVACLEPGHTVCARAKKCITLNLYKEIQEAVD 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
            V+ + ++  LV  + +  K
Sbjct: 121 SVVDRTTLADLVAQQEAQDK 140


>gi|117621543|ref|YP_856282.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117562950|gb|ABK39898.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 167

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL    + I++  V+ A +ES    +C    K  C     C   S+ R       
Sbjct: 61  PGGGYRLGLAPNAISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L   ++  LV +++ +++I  
Sbjct: 119 SFLGDITLAELV-DQADVRRIAG 140


>gi|291618422|ref|YP_003521164.1| YfhP [Pantoea ananatis LMG 20103]
 gi|291153452|gb|ADD78036.1| YfhP [Pantoea ananatis LMG 20103]
          Length = 170

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 6   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A+ I + +V+ A +ES    +C    K  C     C    + R       
Sbjct: 66  PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 123

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   ++  LV N+  +
Sbjct: 124 EFLNNITLAELVNNQEIL 141


>gi|94984606|ref|YP_603970.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554887|gb|ABF44801.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 153

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  ++E   IS+ +L +I   L +AG +++VRG 
Sbjct: 1   MWVSTKAQYGLRALIEIGRRGGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA  I   +VV A E S     C     + C     CG   +  +   A  D
Sbjct: 61  HGGYRLARPASAINAYEVVTAMEGSIAPVSCVEEDHV-CDKGNVCGTLELWHRVDTALRD 119

Query: 121 VLTQYSIECLVRN--RSSIKKIFN 142
           VL   ++  L+ +  R    ++  
Sbjct: 120 VLGATTLADLIADSERQEHARLLQ 143


>gi|145638712|ref|ZP_01794321.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII]
 gi|145272307|gb|EDK12215.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII]
 gi|309750202|gb|ADO80186.1| transcriptional regulator IscR [Haemophilus influenzae R2866]
          Length = 150

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNTDGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    + +       
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|149908844|ref|ZP_01897504.1| Rrf2 family protein [Moritella sp. PE36]
 gi|149808118|gb|EDM68059.1| Rrf2 family protein [Moritella sp. PE36]
          Length = 157

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  +++I+E   IS  +L ++   L +  +V + RG
Sbjct: 1   MRLTSKGRYAVTAMIDLALHADMKPVPLAEISERQSISLSYLEQLFSRLRRKNLVASARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L      I++  ++ A +E+    +C +S    C     C   S+         
Sbjct: 61  PGGGYKLGMLPGDISVGMIIDAVDENVKATKCDSSGG--CNDGKRCLTHSLWDDLSKRIS 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           D L   S+  L+ N   IK+I N
Sbjct: 119 DFLDNISLADLMTNN-EIKQIVN 140


>gi|56708970|ref|YP_165015.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680655|gb|AAV97320.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 160

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 73/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ A          +IA+   +    L KI Q L   G VE+VRGR
Sbjct: 1   MQISKFSDYALRILIHLATSEGGLMSTREIADLQQLPFNHLAKISQWLTHEGYVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  P D I+I  +++ +E    + EC       C +  +CGL  +L +A  AFF 
Sbjct: 61  HGGMRLALPPDAISIGGLLRKSERGTPLVECMKEGGGCCVMTPACGLLPILIEAQEAFFH 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   +++ ++     ++ +  A
Sbjct: 121 SLDGSTLQDVLSGNRGMQNLIRA 143


>gi|87118505|ref|ZP_01074404.1| rrf2 family protein [Marinomonas sp. MED121]
 gi|86166139|gb|EAQ67405.1| rrf2 family protein [Marinomonas sp. MED121]
          Length = 165

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 11/153 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  ++ I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDNGPVSLADISLRQGISLSYLEQLFAKLRKQTLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  DQI +  +V A  ES     C    K DC    +C    +     +   
Sbjct: 61  PGGGYRLSRANDQIFVAQIVDAVNESVDATGC--KGKNDCQSGTTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIEC--------LVRNRSSIKKIFNAG 144
           D L+Q S+          LV  R   +++ +AG
Sbjct: 119 DFLSQISLAQLVSRKDVRLVAQRQENEQLVHAG 151


>gi|225570685|ref|ZP_03779708.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
           15053]
 gi|225160512|gb|EEG73131.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
           15053]
          Length = 181

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R ++  A + +  P  IS IA    ISE +L +++  + KAG+V+++RG
Sbjct: 30  MKLSTKGRYGLRAIIDLARYAETEPVSISSIAARQEISERYLEQLVGLMKKAGLVKSIRG 89

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R    I++ DV++A E S    +C A   +  C     C    V +K  +  
Sbjct: 90  AGGGYVLARDMKDISVGDVLRALEGSLEPVKCAAFYAEEGCMASDGCVTKYVWQKINDNI 149

Query: 119 FDVLTQYSIECLV 131
              + +  ++ LV
Sbjct: 150 NHTVDEIKLDELV 162


>gi|160941172|ref|ZP_02088509.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435733|gb|EDP13500.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
           BAA-613]
          Length = 131

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  AIH D  P +I  IA    IS  +L +I+  L +AG V ++RG +GG  L RP+  
Sbjct: 1   MVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGFVRSIRGNQGGYYLARPSSD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
            T+  +++ TE S    +C +  K  C     C    + R+   A   V+ +Y++E LV+
Sbjct: 61  YTVGSILRITEGSLAPVDCLSGDKNPCTRQMDCVTLRLWRELDEAISGVVDKYTLEDLVQ 120

Query: 133 NRSSIKKIF 141
            + S+K  +
Sbjct: 121 WQKSMKDNY 129


>gi|120554049|ref|YP_958400.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323898|gb|ABM18213.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
           VT8]
          Length = 165

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLALHAGQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD++ + +VV A  ES     C   +K DC     C    +     +   
Sbjct: 61  PGGGYRLSRSADEVFVAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L++ S+  L+R +  I+++ +
Sbjct: 119 QFLSEISLGDLMR-KHEIRQVAD 140


>gi|15602182|ref|NP_245254.1| hypothetical protein PM0317 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720554|gb|AAK02401.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 154

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  +S I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA++I++  V+ A  E+  V  C      DC     C   S+ ++      
Sbjct: 61  PGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRG--DCQEGTECLTHSLWKELSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L + ++E LV      +
Sbjct: 119 AFLNEITLEELVEKNRQKR 137


>gi|257439947|ref|ZP_05615702.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
 gi|257197554|gb|EEU95838.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
          Length = 149

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +     T  ++++A E S     C  S   +CP+   C              
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSEQCFTLPFWAGLDEVIN 120

Query: 120 DVLTQYSIECLVRN 133
             +   ++E L ++
Sbjct: 121 QYIDSVTLEQLAQS 134


>gi|269140159|ref|YP_003296860.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
           EIB202]
 gi|267985820|gb|ACY85649.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
           EIB202]
 gi|304559993|gb|ADM42657.1| Iron-sulfur cluster regulator IscR [Edwardsiella tarda FL6-60]
          Length = 165

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I I  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKEASEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHALWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   S+  LV N+  +
Sbjct: 119 GFLNNISLAELVNNQEVM 136


>gi|222055077|ref|YP_002537439.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564366|gb|ACM20338.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 141

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  A+++   P  + +IA+   I   +L ++   L   GIV ++RG
Sbjct: 1   MRLSTRAQYAVRAMVDLALYSTSKPVSLKEIAQREEIPLSYLEQLFFRLKNGGIVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +  I + ++V   EE      C       C  +  C   ++ +       
Sbjct: 61  PGGGYILARESSLIKVGEIVVTVEEPLSPVACMDEGSTGCSRISQCVTHNIWKGLGEKIR 120

Query: 120 DVLTQYSIECLVRN 133
             L   ++E L + 
Sbjct: 121 GFLDGITLEDLAQE 134


>gi|218289783|ref|ZP_03493983.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258510985|ref|YP_003184419.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218240074|gb|EED07259.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257477711|gb|ACV58030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 144

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ RT+YG+R ++  A    ++ P  +  IAEA  I E FL +I+  L +A +V +VR
Sbjct: 1   MKISSRTEYGLRAMVALARMAGHERPVPLRAIAEAEAIPEPFLDQIMAKLRRANLVTSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKAL 115
           G  GG  L RPA++I++ ++V+  E S     C      D   C L   C   SV  +  
Sbjct: 61  GVNGGYHLSRPAEEISVGELVRVLEGSLAPIACVDDADPDSASCDLYAGCHARSVWVRVT 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
            A    L Q S+  ++ +   ++
Sbjct: 121 KAIARALDQLSLADVMHDDVPLQ 143


>gi|258512207|ref|YP_003185641.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478933|gb|ACV59252.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 140

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT  TDY +RVL+Y A   D    ++ +IA    IS   L K +  L + G +ETVRG
Sbjct: 1   MNLTLFTDYALRVLIYTANQPDGRLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL  P + I I DVV+A E+ F V  CFA+    C L+  C L   L +A++AF 
Sbjct: 61  RGGGMRLAMPPNDIRIGDVVRAMEDDFAVVGCFAND--SCVLLPGCKLRRALGEAVDAFL 118

Query: 120 DVLTQYSI 127
           + L QY++
Sbjct: 119 ETLNQYTL 126


>gi|262372258|ref|ZP_06065537.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter junii SH205]
 gi|262312283|gb|EEY93368.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter junii SH205]
          Length = 157

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARIASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRN 133
           D L + ++  L+  
Sbjct: 119 DYLAKITLADLIAR 132


>gi|24373816|ref|NP_717859.1| Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|120598676|ref|YP_963250.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293246|ref|YP_001183670.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|24348214|gb|AAN55303.1|AE015668_4 Rrf2 family protein [Shewanella oneidensis MR-1]
 gi|120558769|gb|ABM24696.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
           W3-18-1]
 gi|145564936|gb|ABP75871.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens CN-32]
 gi|319426240|gb|ADV54314.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           putrefaciens 200]
          Length = 153

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A+ I++  VV A +ES     C      +C     C   S+         
Sbjct: 61  PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 119 DFLDGISLAGLMQKRD 134


>gi|46198394|ref|YP_004061.1| rrf2 family protein [Thermus thermophilus HB27]
 gi|55980424|ref|YP_143721.1| rrf2 family protein, transcriptional regulator [Thermus
           thermophilus HB8]
 gi|46196016|gb|AAS80434.1| rrf2 family protein [Thermus thermophilus HB27]
 gi|55771837|dbj|BAD70278.1| rrf2 family protein, transcriptional regulator [Thermus
           thermophilus HB8]
          Length = 149

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L  AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRAPRAVPLKEVAEAQGISQHYLEQIAAQLRNAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP +++T L+VV+A E S     C    +  C  VG C    + R+   A   
Sbjct: 61  KGGYRLARPPEKVTALEVVEALEGSLAPVSCLEDPE-SCDKVGRCSTELLWRRVDLAMRQ 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  ++
Sbjct: 120 VLGGTTLKDLIEERRLLE 137


>gi|110678148|ref|YP_681155.1| hypothetical protein RD1_0790 [Roseobacter denitrificans OCh 114]
 gi|109454264|gb|ABG30469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 156

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 73/137 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T++ +R L   A+ +    R+  +     ++   + KI+  L  AG V T RGR
Sbjct: 1   MKLTSYTNFALRSLQLAALKSPELIRVDDVVRVHGLARPHIVKIVHELGVAGYVVTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL +PA +I I DVV+ TE    + ECF   K  CPL+G C L+  L+KA  AF D
Sbjct: 61  NGGFRLGKPAKEIVIGDVVRLTEGPLDLVECFNPEKNTCPLIGICKLSRALQKATRAFMD 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   ++  +  NR  +
Sbjct: 121 VLDDLTLADIAANRDDL 137


>gi|90414467|ref|ZP_01222443.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
 gi|161936286|ref|YP_131442.2| transcriptional repressor NsrR [Photobacterium profundum SS9]
 gi|119372260|sp|Q6LM38|NSRR_PHOPR RecName: Full=HTH-type transcriptional repressor nsrR
 gi|90324472|gb|EAS41031.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
          Length = 144

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V+TVRG
Sbjct: 1   MQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL  PA++I + DVV+ATE    +  C       C +  +C L  +L  A +AF 
Sbjct: 61  KNGGIRLGMPANRIILGDVVRATE-PLQIVNCSEDF---CHITPACQLKGILASARSAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L ++++  L+ N   +  + +
Sbjct: 117 AELDKHTLLSLIDNNPPLLVLLD 139


>gi|300717962|ref|YP_003742765.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063798|emb|CAX60918.1| Transcriptional regulator [Erwinia billingiae Eb661]
          Length = 165

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + +D I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKSSDAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   S+  LV N+  ++
Sbjct: 119 DFLNNISLAELVNNQEILE 137


>gi|83310417|ref|YP_420681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945258|dbj|BAE50122.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 140

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++   H+     I++IAE   IS+  L K++  L ++G +ETVRG+
Sbjct: 1   MRLTLHTDYALRVLVHVGRHDGDLVTINEIAECYGISKNHLTKVVHQLGRSGYLETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GGVRL R  + + + + ++ TEE F +  C      D C L   C     L   L+AFF
Sbjct: 61  YGGVRLLRQPEDVKLGEFIRETEEDFALVRCMRCDTPDECRLNAGCIARDALSSGLSAFF 120

Query: 120 DVLTQYSIECLVRNRSS 136
            VL  Y++  ++ +   
Sbjct: 121 KVLDGYTLADMLEHERQ 137


>gi|269836430|ref|YP_003318658.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785693|gb|ACZ37836.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 143

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R +YG+R ++  A ++   P  ++ IA    +   +L +++ PL +AG+V + RG
Sbjct: 1   MKVSTRGEYGMRAMVSLARMYGQGPVPLAAIASDSAVPAAYLEQLMGPLRRAGLVTSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
             GG  L RP  ++ + +V +  E       C +    D   CP++  C   +V  K  +
Sbjct: 61  AHGGYELARPPAEVRVGEVYRVMEGPIAPMACVSEDSGDEDLCPIIDGCATRAVWIKVRD 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           +    L   ++  L+   ++
Sbjct: 121 SIAAALDSTTLADLLDQHAA 140


>gi|126668574|ref|ZP_01739528.1| rrf2 family protein [Marinobacter sp. ELB17]
 gi|126626979|gb|EAZ97622.1| rrf2 family protein [Marinobacter sp. ELB17]
          Length = 165

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ I+    IS  +L ++   L +  +V ++RG
Sbjct: 1   MKLTTKGRYAVTAMLDLALHGDHGPVTLADISARQEISLSYLEQLFSRLRRRHLVASIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A+ I I +VV+A  ES     C   +K DC     C    +         
Sbjct: 61  PGGGYRLSRGANAIFISEVVEAVSESLDTTRC--GNKGDCQSGEKCLTHHLWSDLSEQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L   S+  L+  R  I+++ +
Sbjct: 119 QFLDNISLNDLMEKR-EIRQVAD 140


>gi|326385353|ref|ZP_08206998.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210159|gb|EGD60931.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 141

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +RV++Y   H D    I++IA A  IS+  L K++  L   G V+ +RGR
Sbjct: 1   MRLTRFSDYAVRVIIYLGAHTDRLCSIAEIARAYDISQNHLMKVVSDLAAHGYVQALRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA +I I  +++ TE +  +  C      DC L G+C L   L +ALNAFF 
Sbjct: 61  NGGIRLGRPAGEINIGKLIRHTEGTIDLVGC-----EDCKLAGACDLPDPLNEALNAFFA 115

Query: 121 VLTQYSIECLV 131
           VL +Y++  ++
Sbjct: 116 VLERYTLADVL 126


>gi|88706864|ref|ZP_01104564.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
 gi|88698914|gb|EAQ96033.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
          Length = 147

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 80/141 (56%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  ++Y +R+LMYCA+H     RI  +A A  IS+  L K  + L + G + TVRGR
Sbjct: 1   MRLTAYSNYSMRILMYCAMHPGQLVRIQDVATAFDISKAHLLKAARHLGQLGYLSTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A++I I  V++A E+S    ECF S    CP+ G+C LT + R+ L AF+ 
Sbjct: 61  SGGIQLGMAAERIDIGAVIRAVEDSGEFVECFNSSTNSCPIAGTCKLTGLFRRGLEAFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   ++  LV   + ++   
Sbjct: 121 ELDGVTLADLVGTGTELRSRL 141


>gi|77165125|ref|YP_343650.1| Iron-sulphur cluster assembly transcription factor IscR
           [Nitrosococcus oceani ATCC 19707]
 gi|254434832|ref|ZP_05048340.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus oceani AFC27]
 gi|76883439|gb|ABA58120.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207091165|gb|EDZ68436.1| iron-sulfur cluster assembly transcription factor IscR
           [Nitrosococcus oceani AFC27]
          Length = 166

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A +I+I+DV+ A +E+     C      +C     C    +        +
Sbjct: 61  PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRCLTHDLWEDLSRQIY 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L + ++  LV+ R  IKK+
Sbjct: 119 EFLARITLGELVQ-RDDIKKV 138


>gi|88800419|ref|ZP_01115984.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
 gi|88776866|gb|EAR08076.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
          Length = 155

 Score =  157 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +RVL+Y  +  ++P RI  +AE+  IS+  L K++Q L   G V+  RGR
Sbjct: 1   MNITRFTDYALRVLVYLNVDTEHPARIQDVAESYDISKNHLMKVVQVLNAQGYVKATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RPA +I I ++V+  EE   + ECF +    C +  +C +  +   A+  FF 
Sbjct: 61  NGGIALSRPASEINIGELVRYFEEGSKLVECFGADN-QCVITPACQIKQMFTGAMEQFFC 119

Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
            L Q+++  +     +  + ++ +
Sbjct: 120 HLDQFTLADMTVPSQQKLLAELLH 143


>gi|303238938|ref|ZP_07325469.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302593571|gb|EFL63288.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 150

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+  ++  AIH+ +    +  I+E C +SE ++ +I   L +AGIV+++RG
Sbjct: 1   MKISTKGRYGLEAIVDLAIHSAEGHVNLKSISERCGMSEAYILQIFLILRRAGIVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG  L +   +IT+ DV+ A E       C     +  C   GSC         ++A 
Sbjct: 61  AQGGYVLAKEPSEITVGDVLTALEGPLAPVACVVTEAEHTCERYGSCATRGFWESIMSAL 120

Query: 119 FDVLTQYSIECLVR 132
            DV    +I  LV 
Sbjct: 121 NDVANSITIADLVE 134


>gi|329297952|ref|ZP_08255288.1| transcriptional repressor NsrR [Plautia stali symbiont]
          Length = 147

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       I+++ +   +S   + KI+  L +AG V   RG
Sbjct: 1   MQLTSFTDFGLRALIYMATLPQGQQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    ++I I DVV+  E    +  C      +C +  +C L S L  A+  F 
Sbjct: 61  KNGGIRLGMDPEKIVIGDVVRKME-PLQLVNC-----KECAINPACRLRSALNNAVQLFL 114

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
               +Y++  LV+N  S+  I 
Sbjct: 115 QEQDKYTLADLVQNNDSLYHIL 136


>gi|254427452|ref|ZP_05041159.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
           sp. DG881]
 gi|196193621|gb|EDX88580.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
           sp. DG881]
          Length = 156

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 3   MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R ++QI +  V+ A +ES     C      DC    +C    +     +   
Sbjct: 63  PGGGYQLSRESEQIDVAAVIAAVDESVDATRC--GGHGDCQEGDTCLTHHLWCDLSDQIQ 120

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  ++  LV  + 
Sbjct: 121 DFLSGITLGELVARQE 136


>gi|163734089|ref|ZP_02141530.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
 gi|161392625|gb|EDQ16953.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
          Length = 149

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+L+   +        S+IA    +SE  L K+   LV+ G V + RGR
Sbjct: 1   MQLDKFTDYALRILITLVVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP ++I + +VV+       V ECF ++K  C ++ +CGL   L +A  AFF 
Sbjct: 61  NGGLTLARPPERILVGEVVRTMTRKEHVVECFGTNK-SCLILPACGLRQPLAEAQEAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L  Y++  + ++R S+  + N+
Sbjct: 120 TLDHYTLADVTQSRHSLGALLNS 142


>gi|183599755|ref|ZP_02961248.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
 gi|188022016|gb|EDU60056.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
          Length = 165

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFARLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R ADQI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDADQIFVAQVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV+N+  I
Sbjct: 120 SFLSSISLDELVKNQEVI 137


>gi|78222091|ref|YP_383838.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78193346|gb|ABB31113.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 142

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  ++H++  P  +  IA    I   +L ++   L +  IVE+VRG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLHSEGRPVSLKDIALREDIPLNYLEQLFNRLRRGAIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +  I + ++V   EE      C    K  C    +C   +V         
Sbjct: 61  PGGGYLLARESSAIRVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHNVWEMLGERIR 120

Query: 120 DVLTQYSIECLV 131
             L   ++E LV
Sbjct: 121 TFLDSITLEDLV 132


>gi|139438966|ref|ZP_01772426.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
           25986]
 gi|133775677|gb|EBA39497.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
           25986]
          Length = 142

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H       + +IA    ISE +L  IL  LV+A ++  +RG
Sbjct: 1   MLVSTKGRYALRVMVDLAEHQAAGRIPLKEIAARQGISEKYLENILATLVRANMLSGMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L RP +Q T+ ++++ TE S     C       C     C    V +       
Sbjct: 61  KGGGYVLTRPPEQYTVGEILRLTEGSLAPVACLDGDCKGCSRSDECPTLDVWKNLDKLIN 120

Query: 120 DVLTQYSIECLVR 132
           D L   +++ LV 
Sbjct: 121 DYLDGVTLDQLVA 133


>gi|39995641|ref|NP_951592.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39982404|gb|AAR33865.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|298504663|gb|ADI83386.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           sulfurreducens KN400]
          Length = 154

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R +   A ++   P ++  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MKLSTKSRYGLRAIFDIAYNSGSLPAQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L +  ++IT+ DV+ ATE    + EC +    K +C   G+C    +  +A   
Sbjct: 61  PQGGYCLAKKPEEITVADVLLATERDINLVECTSKRKKKGECTFDGTCVTQELWCEAGAK 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             D  + ++++ L      +
Sbjct: 121 LLDFFSGFTVKDLCDRGQQM 140


>gi|145628736|ref|ZP_01784536.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
           22.1-21]
 gi|144979206|gb|EDJ88892.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
           22.1-21]
          Length = 150

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    +         
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|329297589|ref|ZP_08254925.1| DNA-binding transcriptional regulator IscR [Plautia stali symbiont]
          Length = 165

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 YFLNNITLAELVNNQEIL 136


>gi|145299544|ref|YP_001142385.1| ISC operon transcriptional regulator IscR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852316|gb|ABO90637.1| isc operon transcriptional regulator IscR [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 167

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL    D I++  V+ A +ES    +C    K  C     C   S+ R       
Sbjct: 61  PGGGYRLGLTPDAISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L   ++  LV  ++ +++I  
Sbjct: 119 SFLGDITLAELV-GQADVRRIAG 140


>gi|89095323|ref|ZP_01168241.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Oceanospirillum sp. MED92]
 gi|89080398|gb|EAR59652.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Oceanospirillum sp. MED92]
          Length = 164

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHEGKGPISLADISERQGISLSYLEQLFAKLRRNELVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R   +I + +V+ A  ES     C  + + DC    +C    +     +   
Sbjct: 61  PGGGYQLNREQPEINVAEVIDAVNESVDATGC--NRQGDCQGGETCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
             L+  S+  LV  + 
Sbjct: 119 GFLSGISLADLVARKD 134


>gi|16272327|ref|NP_438540.1| hypothetical protein HI0379 [Haemophilus influenzae Rd KW20]
 gi|145634625|ref|ZP_01790334.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA]
 gi|260580558|ref|ZP_05848386.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
           influenzae RdAW]
 gi|1175234|sp|P44675|Y379_HAEIN RecName: Full=Putative HTH-type transcriptional regulator HI_0379
 gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|145268170|gb|EDK08165.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA]
 gi|260092900|gb|EEW76835.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
           influenzae RdAW]
          Length = 150

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    +         
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|184157980|ref|YP_001846319.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213157174|ref|YP_002319219.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
 gi|215483548|ref|YP_002325767.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239501899|ref|ZP_04661209.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB900]
 gi|260555142|ref|ZP_05827363.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter baumannii ATCC 19606]
 gi|301345048|ref|ZP_07225789.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB056]
 gi|301510365|ref|ZP_07235602.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB058]
 gi|301595498|ref|ZP_07240506.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB059]
 gi|332851744|ref|ZP_08433669.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013150]
 gi|332865881|ref|ZP_08436661.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013113]
 gi|332874439|ref|ZP_08442342.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6014059]
 gi|183209574|gb|ACC56972.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193077275|gb|ABO12061.2| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
 gi|213056334|gb|ACJ41236.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
 gi|213987411|gb|ACJ57710.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|260411684|gb|EEX04981.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter baumannii ATCC 19606]
 gi|322508298|gb|ADX03752.1| iscR [Acinetobacter baumannii 1656-2]
 gi|323517924|gb|ADX92305.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332729751|gb|EGJ61086.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013150]
 gi|332734931|gb|EGJ66017.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6013113]
 gi|332737283|gb|EGJ68207.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
           6014059]
          Length = 157

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L++++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLV 131
           D L + ++  L+
Sbjct: 119 DYLAKITLANLI 130


>gi|145636353|ref|ZP_01792022.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH]
 gi|148827518|ref|YP_001292271.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG]
 gi|319775754|ref|YP_004138242.1| transcriptional regulator [Haemophilus influenzae F3047]
 gi|329123595|ref|ZP_08252155.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus aegyptius ATCC 11116]
 gi|145270518|gb|EDK10452.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH]
 gi|148718760|gb|ABQ99887.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG]
 gi|301169081|emb|CBW28678.1| DNA-binding transcriptional repressor [Haemophilus influenzae
           10810]
 gi|317450345|emb|CBY86561.1| predicted transcriptional regulator [Haemophilus influenzae F3047]
 gi|327469794|gb|EGF15259.1| iron-sulfur cluster assembly transcription regulator IscR
           [Haemophilus aegyptius ATCC 11116]
          Length = 150

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    +         
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHKLWEDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|93006349|ref|YP_580786.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394027|gb|ABE75302.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
           cryohalolentis K5]
          Length = 181

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 39/181 (21%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT  +DY +R L+Y A   +      IS IA +  IS+  L KI+Q L + G +++VR
Sbjct: 1   MRLTNYSDYALRSLIYLATKPEPTLLANISDIANSYHISKSHLTKIIQQLGQLGYIDSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------------------- 98
           G+ GG+RL      I + +++K  E  F + ECF+++ +D                    
Sbjct: 61  GKNGGIRLAHAPKDINLGELIKKIEPDFALVECFSTNSLDSSIADINSAVINDEKNASAN 120

Query: 99  -----------------CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
                            C +   C L  VL +AL AF  VL +Y++  ++ N+  +  + 
Sbjct: 121 DMSLKLIDETVSHIASGCIISPVCQLKQVLAEALTAFIAVLERYTLADIIENKDELAALL 180

Query: 142 N 142
           +
Sbjct: 181 S 181


>gi|332141977|ref|YP_004427715.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551999|gb|AEA98717.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 161

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I I +V++A +ES     C    + DC     C   S+ +   +   
Sbjct: 61  PGGGYLLGREASEIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+  R 
Sbjct: 119 AFLNSITLGELMAKRD 134


>gi|171914811|ref|ZP_02930281.1| Putative transcriptional regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 151

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L+Y   H D      ++AE   +S   L K+ + L + G + + RG 
Sbjct: 1   MQLTYHTDYALRLLIYLLSHPDRNVSTREMAEFYGVSVNHLVKVAKSLTQGGWLVSSRGI 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L +   +  + D+V+ TE +  + ECF      CP+  SC L  +L +A  AFFD
Sbjct: 61  GGGVMLAKHTPEAKVGDIVRYTE-NTDIVECFQPKTNTCPIHRSCDLKPILFQARRAFFD 119

Query: 121 VLTQYSIECLVRNRSSIKKI 140
           VL  +++  L R+ + +  +
Sbjct: 120 VLDSFTVRDLARHPNELLAL 139


>gi|269798676|ref|YP_003312576.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Veillonella parvula DSM 2008]
 gi|294792648|ref|ZP_06757795.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
 gi|269095305|gb|ACZ25296.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
           DSM 2008]
 gi|294456547|gb|EFG24910.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
          Length = 139

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H  +    I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   +  + +++ A E+S  +  C       CP+   C    + +   + F 
Sbjct: 61  KYGGYRLVKDPSEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120

Query: 120 DVLTQYSIECLVRNR 134
            V+   S++ ++ ++
Sbjct: 121 HVMEHVSLQDVMDHK 135


>gi|149375017|ref|ZP_01892790.1| rrf2 family protein [Marinobacter algicola DG893]
 gi|149360906|gb|EDM49357.1| rrf2 family protein [Marinobacter algicola DG893]
          Length = 165

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ I+    IS  +L ++   L +  +V ++RG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRHKLVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD + I +VV A  ES     C   +K DC     C    +     +   
Sbjct: 61  PGGGYRLSREADSVFIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
             L+  S+  L+R R 
Sbjct: 119 QFLSDISLGDLMRKRE 134


>gi|85712744|ref|ZP_01043789.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
 gi|85693476|gb|EAQ31429.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
          Length = 155

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+     P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVAMFAKQAPVPLADISDRQGISLSYLEQLFARLRKRGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD I++  V+ A +ES    +C    K +C     C   S+     +   
Sbjct: 61  PGGGYRLGRDADSISVGAVIDAVDESIDATKC--QGKGNCHNGEQCLTHSLWEGLSDRIA 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+  + 
Sbjct: 119 QFLDGITLAELMATKE 134


>gi|257093603|ref|YP_003167244.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046127|gb|ACV35315.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 164

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  ++ P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRCSEGPVTLAGISERQKISLSYLEQLFGKLRRYGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RP  Q+T+ D+++A +E     +C      +C     C    +        F
Sbjct: 61  PGGGYCLARPTSQMTVTDIIRAVDEPLDATQCGGRE--NCHDDERCMTHELWTTLNEKMF 118

Query: 120 DVLTQYSIECLVRNR 134
           D L+  ++  LV  +
Sbjct: 119 DYLSSVTLNELVDQQ 133


>gi|163802461|ref|ZP_02196354.1| hypothetical protein 1103602000590_AND4_19427 [Vibrio sp. AND4]
 gi|159173762|gb|EDP58577.1| hypothetical protein AND4_19427 [Vibrio sp. AND4]
          Length = 168

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   A  I I  V+ A +ES    +C    K DC     C   ++ R   +   
Sbjct: 61  PGGGYRLGADAHSIAIGTVIAAVDESIDATKC--QGKGDCQGGIRCLTHTLWRDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+ +   ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137


>gi|218295733|ref|ZP_03496529.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
           Y51MC23]
 gi|218243892|gb|EED10419.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
           Y51MC23]
          Length = 148

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRAPEAVPLKEVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP +++T L+VV+A E S     C    +  C  VG C    + R+   A   
Sbjct: 61  KGGYRLARPPEKVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWRRVDLAMRQ 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  ++
Sbjct: 120 VLGGTTLKDLIEERRLLE 137


>gi|254361062|ref|ZP_04977207.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
 gi|261493610|ref|ZP_05990130.1| putative transcriptional regulator [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261495448|ref|ZP_05991896.1| putative transcriptional regulator [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153092548|gb|EDN73603.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
 gi|261308953|gb|EEY10208.1| putative transcriptional regulator [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261310792|gb|EEY11975.1| putative transcriptional regulator [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 150

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L + GIV++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I++  ++ A  E+  V +C  S   +C     C   S+  +  +   
Sbjct: 61  PGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSG--NCRKDSQCLTHSLWERLEDQIE 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   S+  L    + 
Sbjct: 119 QFLGTISVADLAAEHAD 135


>gi|89094369|ref|ZP_01167310.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
 gi|89081428|gb|EAR60659.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
          Length = 143

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ TDY +RVL Y A ++     +S+IA+   IS   L K++  L KAG + T RG+
Sbjct: 1   MQLSRFTDYTLRVLFYVATNDKRLVTLSEIAKCYDISVEHLRKVVHALSKAGHLATFRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L +   +I I +V+   E    +  C    +  C L G C L SVL +A  AF  
Sbjct: 61  NGGIKLAKHPSEINIGEVIAEAEGRQPLINC---GQQMCRLTGFCTLQSVLGEAQTAFMR 117

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL QY++  ++ +    + + N
Sbjct: 118 VLDQYTLADMLESTDMRESLIN 139


>gi|148263560|ref|YP_001230266.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146397060|gb|ABQ25693.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 141

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y +R ++  +++  D P  + +IA+   I   +L ++   L   GIV ++RG
Sbjct: 1   MRLSTRAQYAVRAMVDLSLYATDKPVSLKEIAQREDIPLSYLEQLFFRLKNGGIVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +  I + ++V   EE      C       C  V  C   ++ +       
Sbjct: 61  PGGGYILARNSALIKVGEIVVTVEEPLSPVACMDEGSTGCSRVSRCVTHNIWKDLGERIR 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++E L      
Sbjct: 121 GFLDAITLEDLTHEARE 137


>gi|319779386|ref|YP_004130299.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
 gi|317109410|gb|ADU92156.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
          Length = 178

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   + +   P  +S I+    IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRSHSGPVTLSAISSRQNISLSYLEQLFSKLRRHELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC------PLVGSCGLTSVLRK 113
             GG  L R A  IT+ D+V A +E      C   +K+ C         G C    +   
Sbjct: 61  PGGGYTLARNAKDITVADIVFAVDEPLDATGC--GNKLPCNNGRDGRDHGHCMTHDLWSS 118

Query: 114 ALNAFFDVLTQYSIECLVRNRS 135
                 D L   S++ LV ++ 
Sbjct: 119 LNAHMVDYLDSVSLQDLVDHQR 140


>gi|303228671|ref|ZP_07315496.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303231408|ref|ZP_07318141.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513916|gb|EFL55925.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516651|gb|EFL58568.1| putative HTH-type transcriptional regulator IscR [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 139

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H  +    I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGTEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   +  + +++ A E+S  +  C       CP+   C    + +   + F 
Sbjct: 61  KYGGYRLVKDPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            V+ + S++ ++ ++  ++
Sbjct: 121 HVMERVSLQDVMDHKFPVE 139


>gi|149202404|ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035]
 gi|149144502|gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035]
          Length = 148

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 72/136 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   D     +++A    +S   L KI+Q L +AG+++T RG 
Sbjct: 1   MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + DV++  E    +  CF +   +C L G C L + L+ A  AF D
Sbjct: 61  GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120

Query: 121 VLTQYSIECLVRNRSS 136
            L + ++  +  ++  
Sbjct: 121 DLDRSTLADIALDQRP 136


>gi|160932651|ref|ZP_02080041.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
 gi|156868610|gb|EDO61982.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
          Length = 145

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A    +    + +IAE   ISE +L  I++ LVK G+V  +RG
Sbjct: 1   MMVSTKGRYALRVMVELAARGLEEFVPLKEIAEHQEISEKYLEAIMKSLVKEGLVTGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +P  Q T+  ++K TE S     C   +   CP    C    + ++      
Sbjct: 61  KGGGYRLSKPPAQYTVGSILKVTEGSLAPVACLGQNAAPCPRAERCATYPMWKRLSQLID 120

Query: 120 DVLTQYSIECLV 131
           D     ++E L 
Sbjct: 121 DFFEGITLEQLA 132


>gi|167856166|ref|ZP_02478905.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|219870330|ref|YP_002474705.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
           parasuis SH0165]
 gi|167852724|gb|EDS23999.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
           29755]
 gi|219690534|gb|ACL31757.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
           parasuis SH0165]
          Length = 148

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H  D P  +  I++   IS  +L ++   L + G+V +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKDMPVSLVDISDRQAISLSYLEQLFAQLRREGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +  ++I +  ++ A  ES  V++C      +C     C   S+  +  N   
Sbjct: 61  PGGGYQLAKTPEEINVSLIIAAVNESVDVSKC--KGNGNCSNNSRCLTHSLWERLENQIE 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV   S 
Sbjct: 119 QYLHTITLAELVEENSD 135


>gi|68248982|ref|YP_248094.1| hypothetical protein NTHI0499 [Haemophilus influenzae 86-028NP]
 gi|145631834|ref|ZP_01787593.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
 gi|145632626|ref|ZP_01788360.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
 gi|145640331|ref|ZP_01795915.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
 gi|229844533|ref|ZP_04464673.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1]
 gi|229846466|ref|ZP_04466574.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1]
 gi|68057181|gb|AAX87434.1| predicted transcriptional regulator [Haemophilus influenzae
           86-028NP]
 gi|144982553|gb|EDJ90107.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
 gi|144986821|gb|EDJ93373.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
 gi|145274917|gb|EDK14779.1| predicted transcriptional regulator [Haemophilus influenzae
           22.4-21]
 gi|229810559|gb|EEP46277.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1]
 gi|229812782|gb|EEP48471.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1]
 gi|309972462|gb|ADO95663.1| transcriptional regulator IscR [Haemophilus influenzae R2846]
          Length = 150

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    +         
Sbjct: 61  PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|302387262|ref|YP_003823084.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197890|gb|ADL05461.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +R+++  A H ND    +  I++   IS+ +L +I+  L ++ ++ T RG
Sbjct: 1   MKISTRGRYSLRMMIDLAEHYNDEFIALKDISKRQNISKKYLEQIVPFLNRSNLLTTYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R   QITI D++ ++E S     C  +    C     C    + +       
Sbjct: 61  HMGGYKLARHPSQITIGDILLSSEGSLNPVSCMDNDPSICARQEDCLTLPIWQGLSEVIA 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  R  
Sbjct: 121 DYLNGITLQDILDRRPD 137


>gi|323141801|ref|ZP_08076668.1| putative HTH-type transcriptional regulator CymR
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413724|gb|EFY04576.1| putative HTH-type transcriptional regulator CymR
           [Phascolarctobacterium sp. YIT 12067]
          Length = 145

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H  D    +  IA    IS+ +L +I+  L K+  ++  RG
Sbjct: 1   MKISTKGRYALRMMLDLAEHQQDGFVALKDIAARQNISKKYLEQIVPILNKSNFLQANRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL     + T+  +++ TE +     C   + + C     C    + +       
Sbjct: 61  FQGGYRLVNAPREYTVGSILRLTEGNLTPVACLDFNPVGCERRNECITLPLWQGLNKVIA 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++ N  +
Sbjct: 121 DYLDNITLQDILDNYKA 137


>gi|256822724|ref|YP_003146687.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM
           16069]
 gi|256796263|gb|ACV26919.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
           DSM 16069]
          Length = 155

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A+H+   P  +++++    IS  +L ++   L KA +V++VRG
Sbjct: 1   MKLSTKGRYAVTAMLDLALHSGNGPITLAEVSSRQDISLSYLEQLFSKLRKASLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RP+ QI+I +VV A  E     +C  + K  C     C    +  +  +  +
Sbjct: 61  PGGGYELKRPSSQISIAEVVLAVNEPISATKC--NGKGGCQDGDLCLSHQLWTELSDQIY 118

Query: 120 DVLTQYSIECLVRNR 134
             L+  ++E +++ +
Sbjct: 119 QFLSGITLEQVIQRQ 133


>gi|91792814|ref|YP_562465.1| iron-sulfur cluster assembly transcription factor IscR [Shewanella
           denitrificans OS217]
 gi|91714816|gb|ABE54742.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           denitrificans OS217]
          Length = 153

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH+   P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVAIHSTTGPVPLADISERQGISLSYLEQLFAKLRKEGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A  I+I  VV A +ES  V  C    K +C     C   S+         
Sbjct: 61  PGGGYHLGLEAKDISISMVVHAVDESVDVTRC--QGKGNCQSGTRCLTHSLWGDLSKQIA 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L++ R 
Sbjct: 119 DFLDGISLAGLMQKRD 134


>gi|109897562|ref|YP_660817.1| BadM/Rrf2 family transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307518|ref|YP_004435369.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|109699843|gb|ABG39763.1| transcriptional regulator, BadM/Rrf2 family [Pseudoalteromonas
           atlantica T6c]
 gi|332174847|gb|AEE24101.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 161

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSQRGPVSLADISERQEISLSYLEQLFSRLRREKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I I +V++A +ES     C    + DC     C   S+ +       
Sbjct: 61  PGGGYKLGRQPSDIPIGEVIRAVDESVDATRC--QGQSDCQGGERCLTHSLWQDLSERIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+    
Sbjct: 119 LFLDGITLGELMAQHD 134


>gi|238921054|ref|YP_002934569.1| iron-sulfur cluster assembly transcription factor IscR,
           [Edwardsiella ictaluri 93-146]
 gi|259493874|sp|C5BEU6|ISCR_EDWI9 RecName: Full=HTH-type transcriptional regulator iscR
 gi|238870623|gb|ACR70334.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Edwardsiella ictaluri 93-146]
          Length = 165

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +I I  V+ A +ES     C    K  C     C   ++ R       
Sbjct: 61  PGGGYLLGKETSEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   S+  LV N+  +
Sbjct: 119 GFLNNISLAELVNNQEVM 136


>gi|149915740|ref|ZP_01904265.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. AzwK-3b]
 gi|149810322|gb|EDM70167.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. AzwK-3b]
          Length = 150

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 80/144 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IRVLM+C  + D     S+IA  C  SE  L +++  L +   + T RGR
Sbjct: 1   MRITKRTNIAIRVLMFCGANIDRLVTKSEIAARCNTSESHLAQVINRLAQLDFLHTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP D+I I DV +  E +  +AECFA     CPLV +C L   +  A  AF+ 
Sbjct: 61  SGGIALARPMDEIIIGDVFRQLESNVPIAECFADVDNTCPLVTACRLRHAIADAAEAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
            L + +++ LV +  ++  IF  G
Sbjct: 121 HLDKITLDVLVCDNVALLDIFMPG 144


>gi|28868629|ref|NP_791248.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971530|ref|ZP_03399641.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
 gi|301386135|ref|ZP_07234553.1| rrf2 family protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060165|ref|ZP_07251706.1| rrf2 family protein [Pseudomonas syringae pv. tomato K40]
 gi|302135108|ref|ZP_07261098.1| rrf2 family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851867|gb|AAO54943.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923722|gb|EEB57306.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
 gi|330872891|gb|EGH07040.1| rrf2 family protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965903|gb|EGH66163.1| rrf2 family protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331019392|gb|EGH99448.1| rrf2 family protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 163

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  VV A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|152995372|ref|YP_001340207.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836296|gb|ABR70272.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
          Length = 162

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  +S I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDQGPVSLSDISSRQGISLSYLEQLFSKLRKKSLVNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R   +I +  +V A  ES     C    + DC    +C    +     +   
Sbjct: 61  PGGGYRLSRLNSEIFVAQIVDAVNESVDATGC--KGRSDCQSGNTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L Q S++ LVR R+ ++++
Sbjct: 119 DFLNQISLDQLVR-RNDVRQV 138


>gi|295104009|emb|CBL01553.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii SL3/3]
          Length = 157

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +     T  ++++A E S     C  S   +CP+   C              
Sbjct: 61  SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 120

Query: 120 DVLTQYSIECLVRN 133
             +   ++E L   
Sbjct: 121 QYIDSVTLEQLASQ 134


>gi|254498832|ref|ZP_05111541.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351940|gb|EET10766.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 143

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +       I++I+ A  IS   L KI+  L + GIV+T+RG+
Sbjct: 1   MQLTQFTDYSLRALIYIGVRQ-KICTINEISIAYSISRNHLIKIIHRLSQIGIVKTIRGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +    D+I +  ++   E +F +  CF  +K  C +  +C L ++L +A  AF  
Sbjct: 60  NGGIEMAISPDKINLKQLILKLEPNFDLVPCFNQNKEPCRIASACKLQTILYEAQKAFLT 119

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL ++++  ++ N++++ ++ 
Sbjct: 120 VLEKFTLADIMHNQAALHQLL 140


>gi|83954868|ref|ZP_00963546.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
 gi|83840594|gb|EAP79766.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
          Length = 156

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 72/137 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  T++ +R L   A+      R+  +     ++   + KI+  L +AG V T RGR
Sbjct: 1   MKLTSYTNFALRSLQLAALKEPDLIRVDDVVRVHGLARPHIVKIVHELGRAGYVATQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA+ I I DVV+ TE    + ECF   +  CPL+G C L+  L++A  AF  
Sbjct: 61  NGGFRLARPAEDIVIGDVVRLTEGPLDLVECFNPERNTCPLIGICKLSRALQEATGAFMA 120

Query: 121 VLTQYSIECLVRNRSSI 137
           VL   ++  +  NR  +
Sbjct: 121 VLDNLTLSDIASNRGDL 137


>gi|254515564|ref|ZP_05127624.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR5-3]
 gi|219675286|gb|EED31652.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR5-3]
          Length = 160

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P R++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQNLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A+ I++ +V+ A  E      C    K DC    +C    +     +   
Sbjct: 61  PGGGYRLKRGAEDISVAEVISAVNEDTDATRC--RGKGDCQEGDTCLTHHLWMDLSDRIR 118

Query: 120 DVLTQYSIECLVRNRS 135
           D LT  S+  LV  R 
Sbjct: 119 DFLTDISLADLVARRE 134


>gi|88800857|ref|ZP_01116412.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
 gi|88776430|gb|EAR07650.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
          Length = 154

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 69/142 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +   T+Y  R+L+    +      +S+IA A  IS   L K+   L++  +V+TVRGR
Sbjct: 1   MKINSFTNYSFRILIMLGANPGRTIPLSEIASAYGISINHLKKVAARLIEQSLVDTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L +  + I + ++ + ++      EC  +    C +   C L  + +KAL  F D
Sbjct: 61  SGGLVLKKAPEDIRLGEIFRISQTDTAFVECMDASSEGCVISPVCRLQGIFQKALAQFID 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            +  Y++  LV N+  I    N
Sbjct: 121 TMDGYTLADLVENKDDINVHLN 142


>gi|317049145|ref|YP_004116793.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950762|gb|ADU70237.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 165

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES    +C    K  C     C    + R       
Sbjct: 61  PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   ++  LV N+  +
Sbjct: 119 EFLNNITLAELVNNQEIL 136


>gi|256830950|ref|YP_003159678.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580126|gb|ACU91262.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 153

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ Y  R+L+  A+HN+  P+R++ I+E   I+  F+ +I++PL  AG+V + RG
Sbjct: 1   MKLSAKSRYASRILLDLALHNEGVPHRVNDISERTGITVPFIEQIIKPLKHAGMVTSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + IT+ D+V+  E S  ++ C ++ ++ C     C   +  ++A +A  
Sbjct: 61  AAGGHQLGRSPENITLGDIVRIMEGSVELSACLSAPEL-CERTAVCPTRAAWQRATDAML 119

Query: 120 DVLTQYSIECLV 131
             L   ++  L 
Sbjct: 120 RELDTITLAGLA 131


>gi|261345349|ref|ZP_05972993.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rustigianii DSM 4541]
 gi|282566392|gb|EFB71927.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
           rustigianii DSM 4541]
          Length = 165

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +DQI + +V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRGSDQIFVAEVIAAVDESVDATRC-QGNKEGCQNGDRCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S++ LV+N+  +
Sbjct: 120 SFLSSISLDELVKNQEVL 137


>gi|56965514|ref|YP_177247.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911759|dbj|BAD66286.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 153

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 2   HLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDY +R L+Y  ++ +    ++  IA    IS   L K++  L + G++ T+RG+
Sbjct: 4   QLTTYTDYALRALLYVGSLPDGERTQVKDIASVYNISLNHLQKVIHDLGRKGVLHTIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L      I I  +V+  E    + ECF     +C +  SC L   L KA +AFF 
Sbjct: 64  HGGIALAHKPVDINIGKLVRELE-DVQLVECF-RDNNNCLISNSCKLKEALAKAQHAFFQ 121

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL QYS+   + N++ +  +F
Sbjct: 122 VLDQYSLADFLENKADLYALF 142


>gi|312796716|ref|YP_004029638.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
 gi|312168491|emb|CBW75494.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
          Length = 180

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 5   MRLTTKGRFAVTAMIDLALRQEKGPVTLAAISQRQQISLSYLEQLFGKLRRHEIVESVRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R AD++T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 65  PGGGYNLARRADEVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPGGHCMTHELWSTLN 122

Query: 116 NAFFDVLTQYSIECLVRNRS 135
               + L   S++ LV  + 
Sbjct: 123 QKMVEYLDSVSLQDLVDQQR 142


>gi|227872831|ref|ZP_03991143.1| possible transcription regulator [Oribacterium sinus F0268]
 gi|227841326|gb|EEJ51644.1| possible transcription regulator [Oribacterium sinus F0268]
          Length = 174

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  L+  A       P  I ++AE   IS  +L +I+  +VK G +++VR
Sbjct: 28  MMISTKGRYALSTLIDIAEQEKKGNPVSIKEVAERQGISVKYLEQIIALMVKGGFLKSVR 87

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L + A  I++ D++ A E +    +C      +C    SC    + ++   A 
Sbjct: 88  GAKGGYLLLKEAKDISVGDILDAAEGTLSPVDCVKEGS-NCERSASCPTFPLYKEIDEAI 146

Query: 119 FDVLTQYSIECLVR 132
           + V+ +YS+E L++
Sbjct: 147 YAVVNRYSLEDLLQ 160


>gi|51102912|gb|AAT96061.1| rrf2 family protein [Pseudomonas viridiflava]
          Length = 163

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  VV A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|330957514|gb|EGH57774.1| rrf2 family protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 163

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  VV A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|313112815|ref|ZP_07798462.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624885|gb|EFQ08193.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 152

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 1   MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +     T  ++++A E S     C  S   +CP+   C              
Sbjct: 61  SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMWEQCFTLPFWTGLDEVIN 120

Query: 120 DVLTQYSIECL 130
             +   ++E L
Sbjct: 121 QYIDSVTLEQL 131


>gi|221633611|ref|YP_002522837.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
           5159]
 gi|221156767|gb|ACM05894.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
           5159]
          Length = 146

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R +YG+R ++  A ++   P  +S IA+   +   +L +++ PL +AG+V + RG
Sbjct: 1   MKVSTRGEYGLRAMVSLARMYGRGPMPLSVIAQDSAVPLAYLEQLMLPLRRAGLVVSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
             GG  L RP +Q+ + ++ +  E      +C      +  CP++  C    V  K  ++
Sbjct: 61  AHGGYELARPPEQVKVGEIYRVMEGPIAPMDCVREDADEDICPMIDGCATRIVWLKLRDS 120

Query: 118 FFDVLTQYSIECLVRN 133
             +VL   ++  L+ +
Sbjct: 121 IVEVLDSTTLADLISH 136


>gi|160893212|ref|ZP_02074000.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
 gi|156865295|gb|EDO58726.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
          Length = 145

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y I++++  A + N  P +I  IA    IS+ +L +I+  L KA +V++VRG
Sbjct: 1   MKISTKGRYAIKLMLDLATYYNGEPVKIKDIARRQHISDKYLEQIVAILNKASLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L    +  T+  +++  E S   A+C  ++   C     C    +  K   A  
Sbjct: 61  ARGGYMLYASPENYTVRQILETVEGSLAPADCVGANAAYCENRSMCVSVLIWEKLDQAIQ 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           DVL   ++  LV  ++++
Sbjct: 121 DVLEGITLADLVDWQNNL 138


>gi|319896708|ref|YP_004134901.1| transcriptional regulator [Haemophilus influenzae F3031]
 gi|317432210|emb|CBY80562.1| predicted transcriptional regulator [Haemophilus influenzae F3031]
          Length = 150

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ D  P  ++ I+E   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P++QI++  ++ A  E+  V +C      +C     C    + +       
Sbjct: 61  SGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L + ++  LV  R+  ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138


>gi|66044484|ref|YP_234325.1| transcription factor IscR [Pseudomonas syringae pv. syringae B728a]
 gi|71736670|ref|YP_273566.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257487211|ref|ZP_05641252.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289626165|ref|ZP_06459119.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649071|ref|ZP_06480414.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|289677962|ref|ZP_06498852.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. syringae FF5]
 gi|298486011|ref|ZP_07004085.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185757|ref|ZP_07262430.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. syringae 642]
 gi|63255191|gb|AAY36287.1| Protein of unknown function UPF0074:Iron-sulphur cluster assembly
           transcription factor IscR [Pseudomonas syringae pv.
           syringae B728a]
 gi|71557223|gb|AAZ36434.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298159488|gb|EFI00535.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322933|gb|EFW79023.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329944|gb|EFW85932.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330869589|gb|EGH04298.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330874670|gb|EGH08819.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330894481|gb|EGH27142.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330895877|gb|EGH28162.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330936997|gb|EGH41093.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330950800|gb|EGH51060.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae Cit 7]
 gi|330969082|gb|EGH69148.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. aceris str. M302273PT]
 gi|330975891|gb|EGH75957.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|330985002|gb|EGH83105.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331009174|gb|EGH89230.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 163

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  VV A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|262376138|ref|ZP_06069368.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter lwoffii SH145]
 gi|262308739|gb|EEY89872.1| iron-sulfur cluster assembly transcription factor IscR
           [Acinetobacter lwoffii SH145]
          Length = 157

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTRGRYAVTALLDLALQPSEKTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+L +++A  E+     C   HK +C     C    + ++  +   
Sbjct: 61  ANGGYHLARNADEITVLAIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118

Query: 120 DVLTQYSIECLVRN 133
           D L + S+  LV  
Sbjct: 119 DYLEKISLADLVAR 132


>gi|229827945|ref|ZP_04454014.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
           49176]
 gi|229787880|gb|EEP23994.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
           49176]
          Length = 144

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H +     +  IA+   +S+ +L +I+  L  AG++ T RG
Sbjct: 1   MKISTKGRYALRLMVDLAEHKESGFIALKDIAKRQNVSKKYLEQIVPVLNGAGLLTTNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +   + T+ D+++ TE S     C  +    C     C    V +       
Sbjct: 61  NRGGYKLSKEPSEYTVGDILRTTEGSVAPVSCLETEVNYCERKDCCQTLFVWKGLYKVVN 120

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   +++ ++   S+
Sbjct: 121 EYLDSITVQDILDRSSA 137


>gi|238018454|ref|ZP_04598880.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
 gi|237864925|gb|EEP66215.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
          Length = 139

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H  +    I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   +  + +++ A E+S  +  C       CP+   C    + +   + F 
Sbjct: 61  KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120

Query: 120 DVLTQYSIECLVRNR 134
            V+ + S++ ++ ++
Sbjct: 121 HVMERVSLQDVMDHK 135


>gi|238927889|ref|ZP_04659649.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238884222|gb|EEQ47860.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 149

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+H       +  IA +  ISE +L +++ PL +AG+VE+VRG
Sbjct: 3   MKLSTKGRYSVTALYELALHYGKGVVPLHAIAASQGISEHYLEQLMVPLRRAGLVESVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L  P  Q+TI  ++ A E    + +C      +    C   G+C    +  +  
Sbjct: 63  AQGGYTLALPPGQVTIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 122

Query: 116 NAFFDVLTQYSIECLVRN 133
            +   VL   ++  LV+ 
Sbjct: 123 ESINSVLNNIALSDLVQR 140


>gi|77465342|ref|YP_354845.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464803|ref|YP_001045916.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221369349|ref|YP_002520445.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
 gi|77389760|gb|ABA80944.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126106614|gb|ABN79144.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221162401|gb|ACM03372.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
          Length = 145

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK +DY +RVL+Y A I +     I + A    IS+  L K++  L+ AG ++  RG
Sbjct: 1   MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL RPA +I + +V++ATE  F + ECF      C +   C L  +L KA+++F 
Sbjct: 61  RTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFM 119

Query: 120 DVLTQYSIECLV 131
           D L +++I  ++
Sbjct: 120 DTLDEFTIADVM 131


>gi|300312445|ref|YP_003776537.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075230|gb|ADJ64629.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  +S I+E   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-----PLVGSCGLTSVLRKA 114
             GG  L R A  +++ D++ A +E     +C    K +C     P    C    +    
Sbjct: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQC--GGKENCHSASHPGGARCMTHDLWSTL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
                + L   S++ LV  +  
Sbjct: 119 NEKMVEYLDSVSLQDLVDQQKE 140


>gi|237800030|ref|ZP_04588491.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022885|gb|EGI02942.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 163

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  VV A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMKVIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|160943772|ref|ZP_02091003.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444946|gb|EDP21949.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
           M21/2]
          Length = 189

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + ++ Y +R++   A +       + +I+E   +S  +L +I+ PL + G+V++ RG
Sbjct: 33  MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 92

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +     T  ++++A E S     C  S   +CP+   C              
Sbjct: 93  SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 152

Query: 120 DVLTQYSIECLVRN 133
             +   ++E L   
Sbjct: 153 QYIDSVTLEQLASQ 166


>gi|15894952|ref|NP_348301.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024637|gb|AAK79641.1|AE007677_3 Predicted transcriptional regulator (HTH winged helix type)
           [Clostridium acetobutylicum ATCC 824]
 gi|325509089|gb|ADZ20725.1| transcriptional regulator (HTH winged helix type) [Clostridium
           acetobutylicum EA 2018]
          Length = 139

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG++ ++  AIH    P  I  I+E   ISE +L ++  PL K+G+++++RG
Sbjct: 1   MKLSTKGRYGVKAMVDLAIHYGAEPVSIKSISERQKISEAYLEQLFVPLRKSGLIKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    I I ++    E    +++C  S    C     C    +  K   +  
Sbjct: 61  SQGGYVLSKDPKDIHISNIFDVLEGPIEISDCVESD--SCDNSDYCVTRLLWVKIKESID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           +V    +++ +V + +SIK
Sbjct: 119 NVTKTITLKDMVDDYNSIK 137


>gi|125974348|ref|YP_001038258.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256005573|ref|ZP_05430533.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281418895|ref|ZP_06249913.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|125714573|gb|ABN53065.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|255990481|gb|EEU00603.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|281407352|gb|EFB37612.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|316941506|gb|ADU75540.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 153

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+  ++  AIH+ +    +  IAE C +SE ++ +I   L +AGIVE++RG
Sbjct: 1   MKISTKGRYGLEAIVDLAIHSSEGRVSLKSIAERCGMSEAYILQIFLILRRAGIVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKAL 115
            +GG  L R   QIT+ +++   E       C A      K  C    +C   S   K +
Sbjct: 61  AQGGYVLARDPSQITVGEILTVLEGPLAPVPCIAEKTKRSKSSCERYENCTARSFWEKIM 120

Query: 116 NAFFDVLTQYSIECLVR 132
           N   DV    ++E LV+
Sbjct: 121 NTLNDVANSITVEDLVK 137


>gi|146308527|ref|YP_001188992.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           ymp]
 gi|145576728|gb|ABP86260.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas mendocina
           ymp]
          Length = 165

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVARRE 134


>gi|88706198|ref|ZP_01103905.1| rrf2 family protein [Congregibacter litoralis KT71]
 gi|88699592|gb|EAQ96704.1| rrf2 family protein [Congregibacter litoralis KT71]
          Length = 160

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P R++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQDLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A+ I++ DV+ A  E      C    K DC    +C    +     +   
Sbjct: 61  PGGGYRLKRGAEDISVADVISAVNEDTDATRC--RGKGDCQDGDTCLTHHLWMDLSDRIK 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSDISLADLVARRE 134


>gi|307824416|ref|ZP_07654641.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
 gi|307734400|gb|EFO05252.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
          Length = 157

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A H+   P  ++ IA    IS  +L ++   L +AG+V+ VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAFHSQIKPVTLTDIAARQTISLSYLEQLFARLRRAGMVKGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +LCR    I I D++ A  E     +C    + +C    +C    +         
Sbjct: 61  PGGGYKLCRKTSDINIADIIAAVNEPLDSTKC--GGEANCQKDQACLTHDLWMGLSEQIR 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   S+  L+    
Sbjct: 119 DYLKGISLADLLEKNQ 134


>gi|78224182|ref|YP_385929.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78195437|gb|ABB33204.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 154

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R +   A ++   P+++  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MKLSTKSRYGLRAIFDIAYNSGNLPSQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117
            +GG  L +  ++IT+ DV+ ATE    + EC      K++C   G+C    +  +A + 
Sbjct: 61  PQGGYCLAKKPEEITVADVLLATERDMNLVECTNKRKKKVECGFDGTCVTQELWCEASSR 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             +  +  +++ L     S+
Sbjct: 121 LVEYFSAITVKDLCDRGQSM 140


>gi|146279260|ref|YP_001169418.1| hypothetical protein Rsph17025_3229 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557501|gb|ABP72113.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 144

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK +DY +RVL+Y A I +     I + A    IS+  L K++  L+ AG ++  RG
Sbjct: 1   MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMSLIHAGFLQGTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL RPA++I + +V++ATE  F + ECF      C +   C L  +  KA+ +F 
Sbjct: 61  RTGGFRLARPANEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPIFAKAVKSFM 119

Query: 120 DVLTQYSIECLV 131
           D L Q++I  ++
Sbjct: 120 DTLDQFTIADVM 131


>gi|153813655|ref|ZP_01966323.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
 gi|149830271|gb|EDM85364.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
          Length = 143

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y IRV++  A HN      +  IA+   ISE +L  I+  L K   V+ +RG
Sbjct: 1   MKISTRGRYAIRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + TI  +++ TE S     C   H   C    SC    +         
Sbjct: 61  KGGGYRLVRTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEGFYKLLN 120

Query: 120 DVLTQYSIECLVRNRSS 136
           +     ++E L+   + 
Sbjct: 121 EYFDGITLEDLLEQSTD 137


>gi|307543983|ref|YP_003896462.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halomonas elongata DSM 2581]
 gi|307216007|emb|CBV41277.1| transcriptional regulator, BadM/Rrf2 family [Halomonas elongata DSM
           2581]
          Length = 183

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ IA+   IS  +L ++   L + G+V++VRG
Sbjct: 29  MRLTTKGRYAVTAMLDLAMHADEGPICLADIAKRQEISLSYLEQLFARLRRRGLVDSVRG 88

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + I++  V+ A +ES     C      DC    +C    +  +      
Sbjct: 89  PGGGYLLTLSPEAISVAQVIDAVDESVDATRC--GGMSDCQQGDTCLTHHLWNELSEQIH 146

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++  L R R   + I
Sbjct: 147 GFLDGVTLGQLAR-RDEFRAI 166


>gi|282849760|ref|ZP_06259144.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|294794427|ref|ZP_06759563.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
 gi|282580697|gb|EFB86096.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|294454757|gb|EFG23130.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
          Length = 139

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A H  +    I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   +  + +++ A E+S  +  C       CP+   C    + +   + F 
Sbjct: 61  KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120

Query: 120 DVLTQYSIECLVRNR 134
            V+   S++ ++ ++
Sbjct: 121 HVMEHVSLQDVMDHK 135


>gi|329119509|ref|ZP_08248194.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464442|gb|EGF10742.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 153

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL Y A++++    I+ IAE   IS+  L K++  LVK G +++VRG+
Sbjct: 1   MYLTQQTDYALRVLAYAAVNSEELVNIATIAEVYGISKSHLMKVVTALVKGGFLDSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A+ I + DVV+  E    + EC  +    C L   C L SVL  A  AF +
Sbjct: 61  GGGLRLRRQAELIRLGDVVRHME-PMKLVECMGAGN-QCLLTSCCLLASVLNDAGKAFLE 118

Query: 121 VLTQYSIECLVRNRS 135
            L ++++  L+   +
Sbjct: 119 HLDKFTLADLINKPT 133


>gi|294101175|ref|YP_003553033.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
 gi|293616155|gb|ADE56309.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
          Length = 138

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T YG+R L+      D   P  I+ IA    ISE +L ++   L + G++E+VR
Sbjct: 1   MKLSTKTRYGLRALLELVRQYDGRTPLSITDIASKENISERYLEQLFLKLRRDGLIESVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +IT+ +VV+  E +  +A+C      +C    +C    +  +  ++ 
Sbjct: 61  GPQGGYLLSRAPMEITVAEVVEVLEGNIQIADCL--EGPECMRESACPARKLWLRLRDSI 118

Query: 119 FDVLTQYSIECLVRNRS 135
            +VL   +++ L+ +  
Sbjct: 119 DNVLVSTTLKDLIEDHD 135


>gi|239994262|ref|ZP_04714786.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 161

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I I +V++A +ES     C    + DC     C   S+ +   +   
Sbjct: 61  PGGGYLLGREASKIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+  R 
Sbjct: 119 AFLNSITLGELMAKRD 134


>gi|330991657|ref|ZP_08315608.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329761676|gb|EGG78169.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 153

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 6   RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            TDY +R L+Y  +H D    I +IA+A  ISE  L K++  L + G+++  RGR GG+ 
Sbjct: 2   HTDYALRTLLYMGLHADRRVSIHEIADAYDISENHLVKVIHRLSRLGLIDARRGRGGGLV 61

Query: 66  LCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           L    + I I DVV+ TE+   +  C         C L   C L   L +AL+AF  VL 
Sbjct: 62  LAHAPEDIRIGDVVRKTEDDMRLVSCEPANPEGAGCILSDMCKLRGALAQALDAFMKVLD 121

Query: 124 QYSIECLVRNRS 135
           + ++  L+ +  
Sbjct: 122 ETTLADLLPDHD 133


>gi|320450975|ref|YP_004203071.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
           SA-01]
 gi|320151144|gb|ADW22522.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
           SA-01]
          Length = 154

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       + ++AEA  IS+ +L +I   L ++G + +VRG 
Sbjct: 7   MWVSTKAQYGLRALVEIGLKAPEAVPLKEVAEAQGISQHYLEQIAAQLRRSGFIRSVRGA 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP +++T L+VV+A E S     C    +  C  VG C    + ++   A   
Sbjct: 67  RGGYRLARPPERVTALEVVEALEGSLAPVSCIEDPE-SCAKVGQCSTELLWKRVDLAMRQ 125

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 126 VLGSTTLKDLIEERKLIE 143


>gi|146283373|ref|YP_001173526.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           stutzeri A1501]
 gi|145571578|gb|ABP80684.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           stutzeri A1501]
          Length = 183

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 21  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C       C    +C    +         
Sbjct: 81  PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 138

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L+  S+  LV NR  ++++
Sbjct: 139 EFLSGISLADLV-NRQDVQQV 158


>gi|254671066|emb|CBA07956.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 145

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T+ TDYG+RVL+Y AI++D    IS IA    IS+  L K++  LVK G + +VRG+ G
Sbjct: 1   MTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGKGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+RL  P D+I I  VV+  E    + EC      +C +  SC LT +L  A+ +FF  L
Sbjct: 61  GLRLAAPPDRINIGSVVRHLE-PMQLVECMG-ENNECLITPSCRLTGILGGAMKSFFTYL 118

Query: 123 TQYSIECLVRNRS 135
             ++++ L+   +
Sbjct: 119 DGFTLQDLLNKPT 131


>gi|169350929|ref|ZP_02867867.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
 gi|169291991|gb|EDS74124.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
          Length = 148

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  AIH+D     +  IA+   ++  +L +I+  L KAG ++++RG
Sbjct: 1   MKISTKGRYALRIMLDIAIHDDGKYIPLKDIAKRQNLTVKYLEQIISLLNKAGYLQSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  D+  + D+++ TE       C       C     C      R       
Sbjct: 61  NTGGYRLAKNLDEYVVGDILRVTEGDLAPVACLKKCGDFCQREDICNTVLFWRGLDRVIN 120

Query: 120 DVLTQYSIECLV---RNRSSIKKI 140
           + +  Y+++ L+   +++ + KK+
Sbjct: 121 EYVDSYTLKDLLEQSQDKDNNKKL 144


>gi|239908355|ref|YP_002955096.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239798221|dbj|BAH77210.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 155

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    +   R   IA    I + FL  IL  L + G V++ RG
Sbjct: 7   MWVTQKCQYALRALFELAKRQGEGAVRSVDIAANQAIPKRFLEVILHQLRQGGFVDSQRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RP   IT+ D+++  +      +C       DC L GSC    +  +A  A 
Sbjct: 67  KEGGFFLSRPPANITVGDIIRFIDGPMTPVDCQLDRPHFDCALKGSCVFLGLWDEAREAL 126

Query: 119 FDVLTQYSIECLVRNRSSI 137
             V    +++ LV   S++
Sbjct: 127 ERVYDTKTLQELVDKESAM 145


>gi|85059748|ref|YP_455450.1| DNA-binding transcriptional regulator IscR [Sodalis glossinidius
           str. 'morsitans']
 gi|119371153|sp|Q2NS30|ISCR_SODGM RecName: Full=HTH-type transcriptional regulator iscR
 gi|84780268|dbj|BAE75045.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 165

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  +++I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSGKGPVPLAEISERQGISLSYLEQLFSRLRKHELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +DQI +  V+ A +ES     C    K  C     C    + R       
Sbjct: 61  PGGGYLLGRDSDQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHVLWRDLSVRIS 118

Query: 120 DVLTQYSIECLVRNRSSI 137
           + L   ++  LV N   +
Sbjct: 119 EFLNNITLAELVSNEEIL 136


>gi|295102090|emb|CBK99635.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii L2-6]
          Length = 143

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H ++    + ++A    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHRSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C       CP +  C   ++ +   +   
Sbjct: 61  KGGGYRLTREPDQYTVGEILTLTEGSLAPVSCLVQGAAPCPRMSGCRTYNMWKGLDDLIE 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D   + ++  L     +
Sbjct: 121 DYFGKITLADLAAPDEA 137


>gi|226328026|ref|ZP_03803544.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
 gi|225203730|gb|EEG86084.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S+E LV N   +
Sbjct: 120 SFLSSISLEELVNNEEVM 137


>gi|254450707|ref|ZP_05064144.1| rhizobial iron transcriptional regulator protein [Octadecabacter
           antarcticus 238]
 gi|198265113|gb|EDY89383.1| rhizobial iron transcriptional regulator protein [Octadecabacter
           antarcticus 238]
          Length = 143

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL K +DY +R+L+  ++        S IA++  +S+  + K+   LV+ G V + RGR
Sbjct: 1   MHLDKFSDYAVRILIALSVSKAGRVPASSIAQSYGLSQHHIAKVATELVRGGFVTSDRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L RPA  I+I  V+++      VAECF S   +C ++ +CGL + L +A +AFF 
Sbjct: 61  GGGLQLARPATDISIGAVLRSIMADDPVAECFGS-APNCAILPACGLRTPLTQAKDAFFS 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL  Y+++ + + +S++  + +A
Sbjct: 120 VLDGYTLDDVTQRKSALADLLSA 142


>gi|33152205|ref|NP_873558.1| hypothetical protein HD1080 [Haemophilus ducreyi 35000HP]
 gi|33148427|gb|AAP95947.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 150

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + GIV +VRG
Sbjct: 1   MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +   +I++  V+ A  ES  V +C      +C     C    +  +  +   
Sbjct: 61  PGGGYQLGKSPAEISVGMVISAVSESLDVTKC--KGNGNCSKNSQCLTHHLWERLEDQIG 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  L    + 
Sbjct: 119 VFLNTITLAELAEEHAG 135


>gi|218133327|ref|ZP_03462131.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992200|gb|EEC58204.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
           43243]
          Length = 147

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV+   A H       + +I+    IS  +L  I+  L K  +V +  G
Sbjct: 1   MMISTKGRYALRVMTDLAQHGTGDFIPLKEISARQGISLKYLESIMTILSKGHMVRSASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L +  ++  + D+++ TE       C A     C L   C      +   +A  
Sbjct: 61  KGGGYCLIKSPEEYRVGDILRLTEGDLAPVACLAPDTKKCDLTNECYTLPFWKGLGDAIN 120

Query: 120 DVLTQYSIECLV 131
           + L  +++  LV
Sbjct: 121 EYLDGHTLADLV 132


>gi|298243979|ref|ZP_06967786.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297557033|gb|EFH90897.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 145

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT + DYG+R ++  A +    P   S IA    I E +L +IL  L K G+V++VRG
Sbjct: 1   MKLTMKGDYGLRAMLDMAAYYGQGPIESSDIASRQYIPEQYLDQILMVLRKEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   QIT+  V++A E      EC  +    C L   C L  V +K   A  
Sbjct: 61  PKGGHMLAKAPGQITMAQVMQALEGYVPPMECLPNPDF-CKLSPGCALREVWQKIDAATQ 119

Query: 120 DVLTQYSIECLVRNRS 135
           ++L   +IE L +   
Sbjct: 120 EILNSTTIEELAQRHR 135


>gi|59712922|ref|YP_205698.1| transcriptional repressor NsrR [Vibrio fischeri ES114]
 gi|197336033|ref|YP_002157111.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
 gi|75353317|sp|Q5E2D6|NSRR_VIBF1 RecName: Full=HTH-type transcriptional repressor nsrR
 gi|226737681|sp|B5FBQ6|NSRR_VIBFM RecName: Full=HTH-type transcriptional repressor nsrR
 gi|59481023|gb|AAW86810.1| nitrite-responsive HTH-type transcriptional repressor NsrR [Vibrio
           fischeri ES114]
 gi|197317523|gb|ACH66970.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
          Length = 141

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y  ++       I+ + E   +S   + KI+  L + G V+T+RG
Sbjct: 1   MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLGQEGYVKTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PADQI I DV++A E    V  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGICLGKPADQIIIGDVIRAIE-PLQVVNCAPEF---CHITPACRLKGALAKAKQAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L +++I+ ++ + S +  + 
Sbjct: 117 DELDKHTIQDMLTDNSELLILL 138


>gi|294679131|ref|YP_003579741.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|294477947|gb|ADE87334.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 166

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L+Y A   +    I ++AE   IS   + K++  L + G + + +GR
Sbjct: 1   MRLTTFTDYALRLLIYTAGKPESRVTIDEVAEWFAISRAHVKKVVLTLSRGGFLLSSKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + +V+ ATE  F + EC+ +   +C +   C L +V  +AL AF  
Sbjct: 61  NGGFTLARPPGEINLSEVILATEPDFGLFECYLTGN-ECRISRPCRLPNVANEALAAFLA 119

Query: 121 VLTQYSIEC 129
           VL +Y++  
Sbjct: 120 VLGKYTLAD 128


>gi|209696175|ref|YP_002264105.1| transcriptional repressor NsrR [Aliivibrio salmonicida LFI1238]
 gi|226736212|sp|B6EMP9|NSRR_ALISL RecName: Full=HTH-type transcriptional repressor nsrR
 gi|208010128|emb|CAQ80453.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 141

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R L+Y A +       I+ + E   +S   + KI+  L + G ++TVRG
Sbjct: 1   MQLTNFTDFGLRALIYLASLPKGELTSITVVTETFDVSRNHMVKIINKLGQEGFIKTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L RPADQI I +V+++ E  F +  C       C +  +C L + L KA  AF 
Sbjct: 61  KNGGICLGRPADQIIIGEVIRSIE-PFNIVNCAPEF---CHITPACRLKTALAKAKQAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L Q++I+ ++   + +  + 
Sbjct: 117 DELDQHTIQDMLTENNELLILL 138


>gi|307729210|ref|YP_003906434.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1003]
 gi|323526617|ref|YP_004228770.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1001]
 gi|307583745|gb|ADN57143.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1003]
 gi|323383619|gb|ADX55710.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1001]
          Length = 176

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R  + +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRPEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|227356227|ref|ZP_03840616.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           ATCC 29906]
 gi|227163691|gb|EEI48607.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           ATCC 29906]
          Length = 164

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGREAGQIFVAQVISAVDESIDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S+E LV N   +
Sbjct: 120 SFLSSISLEELVNNEEVM 137


>gi|312880924|ref|ZP_07740724.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784215|gb|EFQ24613.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 164

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    + P RI  +AEA  I   FL  IL  L   G VE+ RG
Sbjct: 1   MAITQKCQYALRALFELACREGEGPVRIGTVAEAQNIPPRFLEGILNTLKAGGFVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL RPA  I++ DV++  + S    +C   S +  C L G C    +  +A  A 
Sbjct: 61  KEGGYRLLRPARDISVGDVIRYLQGSLSQVDCDPGSSREPCGLYGDCVFRPLWERAQKAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V    +I+  V  ++  ++
Sbjct: 121 ESVYDSTTIQDFVDRQAERER 141


>gi|254503973|ref|ZP_05116124.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
 gi|222440044|gb|EEE46723.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
          Length = 140

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/128 (47%), Positives = 88/128 (68%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA++ D P+R++ IA +  +SE  LFKI++ LV A ++ T+RGR GGV L RPA+ I+
Sbjct: 1   MYCAVNPDKPSRVADIAASFEMSETHLFKIMKVLVDANLIRTIRGRNGGVMLARPAEAIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +VV+A EESF +AECF S + DCPL+ SCG   +L +AL AF +VL   SI  L  +R
Sbjct: 61  VGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFMEVLDAKSIADLSEDR 120

Query: 135 SSIKKIFN 142
             ++ + N
Sbjct: 121 FGMRTLLN 128


>gi|295108297|emb|CBL22250.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
           A2-162]
          Length = 144

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ L+   +H +     I  IA    IS+ +L +++  L KAG+VE+ RG
Sbjct: 1   MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG RL RPA +I++ DV++  E S   A+C     +  C     C    V ++  ++ 
Sbjct: 61  AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              +    ++ L+      +K
Sbjct: 121 TQAVDTMMLDQLIEESRKKQK 141


>gi|110678994|ref|YP_682001.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
 gi|109455110|gb|ABG31315.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
          Length = 147

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LM  A+        S+IA    +SE  L K+   LV+ G V + RGR
Sbjct: 1   MQLDKFTDYALRILMTLAVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  ++I +  VV+       V ECF + K  C ++ SCGL   L +A  AFF 
Sbjct: 61  NGGLTLARAPERILVGAVVRTMTRKAHVVECFGTDK-SCLILPSCGLRQPLAEAQEAFFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L  Y++  + R+R  +  + N
Sbjct: 120 TLDHYTLADVTRSRHGLGALLN 141


>gi|77919328|ref|YP_357143.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77545411|gb|ABA88973.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 155

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L   A +    P +I  I+    IS  +L +I Q   KAGI+++ +G
Sbjct: 1   MRLSTKSRYGLRALFDIAYNAGNQPAQIKDISRRQDISPRYLEQIFQSFKKAGILKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
            +GG  L R  DQIT+  +V+A E    +  C       K  C + G C   +V  +A  
Sbjct: 61  PQGGYFLTRKPDQITVRQIVEAAEGDTLLVACACETPKGKGCCTMNGQCVTQTVWFEATE 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
                L   +++ L      +
Sbjct: 121 HLNTFLDSLTLQTLCERGQDM 141


>gi|284006761|emb|CBA72019.1| iron-sulfur cluster transcriptional regulator [Arsenophonus
           nasoniae]
          Length = 164

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSKTGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I I  V+ A +ES     C    +  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGRDAKTIFIAQVISAVDESVDATRCHGRREG-CQGGERCLTHALWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRS 135
             L+  S+E LV N+ 
Sbjct: 120 SFLSNISLEELVNNQE 135


>gi|220935228|ref|YP_002514127.1| iron-sulphur cluster assembly transcription factor IscR
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996538|gb|ACL73140.1| iron-sulphur cluster assembly transcription factor IscR
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 162

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIHN+  P  ++ I+    IS  +L ++   L K G+V + RG
Sbjct: 1   MRLTTKGRYAVTAMLDLAIHNEQGPISLADISHRQGISLSYLEQLFARLRKQGLVVSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPAD+  I DV+ A +E      C      DC     C    +     +   
Sbjct: 61  PGGGYSLSRPADKTAIADVIAAVDEKVDTTRC--GGAADCQNNQRCLTHDLWSDLSDQIR 118

Query: 120 DVLTQYSIECLVRNR 134
             LT  ++  ++   
Sbjct: 119 QFLTNITLADVMARN 133


>gi|325282545|ref|YP_004255086.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
 gi|324314354|gb|ADY25469.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
          Length = 163

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M ++ +  YG+R L+                +  +AE   +S+ +L +I   L +AG ++
Sbjct: 1   MWVSTKAQYGLRALIEIGRGGGTPGEGRAVPLKDVAERQDLSQHYLEQIASNLRRAGFIK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           +VRG  GG RL RPADQI+  DVV A E S    EC   + + C     CG   + ++  
Sbjct: 61  SVRGAYGGYRLARPADQISAYDVVTALEGSIAPVECVEENHV-CDGKNVCGTLDLWQRVD 119

Query: 116 NAFFDVLTQYSIECLVRN 133
            A  DVL   ++  L+ +
Sbjct: 120 QALRDVLGSTTLADLIED 137


>gi|239906274|ref|YP_002953014.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239796139|dbj|BAH75128.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 145

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H D  P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLLDIALHGDEGPVRIQDIAKRRGISVKYLEQLIRALKKAGFINSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L  PA+ I + DVV+A E    + EC  + ++ C +   C    +  +A  + F
Sbjct: 61  PKGGHVLATPAEAIRVGDVVRALESRPELTECVGNPEV-CMISTDCVTRQIWARATESIF 119

Query: 120 DVLTQYSIECLV 131
             L    +  L+
Sbjct: 120 RELDAIHLSDLL 131


>gi|83312129|ref|YP_422393.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82946970|dbj|BAE51834.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 157

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A H++  P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLSTKGRYAVMAMVDLASHSEGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R   Q  I D++ A +E      C       C    G C    +  +  N  
Sbjct: 61  PGGGYLLSRIPQQTRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCLTHDLWEELGNQI 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L+  S+  +   R
Sbjct: 121 YLYLSSVSLADVCERR 136


>gi|296446526|ref|ZP_06888469.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296256022|gb|EFH03106.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 144

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 67/129 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R L+  A   D     + IA+   +S   + K+LQ L  +G VE +RG 
Sbjct: 1   MKLTTFTDFGLRALILLASRKDEVLSAAAIADYFSVSRHHMAKVLQELAASGYVEGIRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GGVRL +    I + DVV++ ++   + +CF     DC L+  C L  +L  A   F  
Sbjct: 61  QGGVRLAKDPRDIRVGDVVRSLDKEQALVDCFRDGWNDCALLPRCRLKGMLANAQQGFLR 120

Query: 121 VLTQYSIEC 129
            L +++I  
Sbjct: 121 ELDRFTISD 129


>gi|291551296|emb|CBL27558.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus torques
           L2-14]
          Length = 142

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  +    D    + +IA    ISE +L  IL+ LV  G +  +RG
Sbjct: 1   MIISTRGRYALRVMIDLSQQDPDSYTPLKEIAARQEISEKYLENILKSLVTQGFILGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   + T+  ++ ATE S     C   H  +C   G C    +  K  N   
Sbjct: 61  KGGGYRLTKSPGEYTLASILHATEGSLAAVACLEDHAPECARAGQCPTRPIWEKLDNLIE 120

Query: 120 DVLTQYSIEC 129
           D L   ++  
Sbjct: 121 DYLGSITLAD 130


>gi|332526731|ref|ZP_08402833.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111134|gb|EGJ11166.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 177

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+ +   P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRSHSGPVALAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD+IT+ D++ A +E      C           G C    +     N   
Sbjct: 61  PGGGYSLGRGADEITVADIIVAVDEPIDATGCGGKENCHGDDGGRCMTHDLWASLNNKMI 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   S++ LV  +
Sbjct: 121 EYLDSISLKKLVDEQ 135


>gi|317154436|ref|YP_004122484.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944687|gb|ADU63738.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+ +  A H    P RI  IAE   +S  +L K+++ L   G V + RG
Sbjct: 1   MRLTTRSRYGTRMALDIAQHCGPGPVRIQDIAERQGVSTKYLEKLIRRLKDGGYVVSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L RPA +I I ++V+  E    + EC    K DC     C  + +  +A  A +
Sbjct: 61  PRGGHTLARPASEILIGELVRVLEGDDSLVECRTGKK-DCQRRSVCLTSRLWVEAAEAMY 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L  +++  ++ +     K
Sbjct: 120 QRLNSFTLADMLADAEQCSK 139


>gi|225165991|ref|ZP_03727744.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
           TAV2]
 gi|224799763|gb|EEG18239.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
           TAV2]
          Length = 200

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+K+ +Y +R L+   I  +      +++++A+   I   FL +I+Q L  +G+V + 
Sbjct: 1   MKLSKKGEYALRALIDLGIAAEVDRDLVQVAELADKELIPIKFLEQIMQELKTSGLVISQ 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKA 114
           RG+ GG RL RPA +I+I  V++  +       C +     K  CP    CGL  ++   
Sbjct: 61  RGKFGGYRLSRPASEISIGSVIRFIDGPLAPIGCVSQTAYEKCSCPDETHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQYSIECLVR 132
            NA   +L +YS+  +V 
Sbjct: 121 RNAIAGILDRYSLADVVD 138


>gi|330504691|ref|YP_004381560.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918977|gb|AEB59808.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 165

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVVRRE 134


>gi|197285716|ref|YP_002151588.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194683203|emb|CAR43856.1| putative iron-sulfur cluster transcriptional regulator [Proteus
           mirabilis HI4320]
          Length = 164

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A QI +  V+ A +ES     C   +K  C     C   ++ R   +   
Sbjct: 61  PGGGYLLGREAGQIFVAQVISAVDESVDATRC-QGNKEGCQGGDRCLTHTLWRDLSDRIT 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L+  S+E LV N   +
Sbjct: 120 SFLSSISLEELVNNEEVM 137


>gi|307292739|ref|ZP_07572585.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306880805|gb|EFN12021.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 150

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +RVL++  +       I +IA+A  +S   L K++  L + G+++T RGR
Sbjct: 1   MQLTRHTDYALRVLIHLTVAPSGRATIPEIADAYSLSRNHLMKVVHHLGQGGLLDTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP + I+I +VV+ +E    +A+C       C L  +CGL+++L+ A  AF  
Sbjct: 61  GGGFTLARPPEAISIGEVVRHSEPDMNMADC-----GSCALRTACGLSAILKAATAAFLA 115

Query: 121 VLTQYSIECLVRNR 134
           VL ++S+    R++
Sbjct: 116 VLDRHSLADAARDK 129


>gi|110347078|ref|YP_665896.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283189|gb|ABG61249.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 153

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+LMY A   D    I + A A  +S+  L K+   L + G ++ VRGR
Sbjct: 1   MRLTSFSDYALRMLMYAATAGDRLITIEEAARAFSVSKTHLNKVANTLTRGGYLKAVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  + I I DV++ TE  F + ECFA+    C L  SC L+ +L +A+ +F +
Sbjct: 61  SGGLMLDRRPETIRIGDVIRMTEPDFALVECFATGN-QCILTNSCKLSGMLGEAMASFHE 119

Query: 121 VLTQYSIECL 130
            L +Y++  +
Sbjct: 120 TLDRYTLADI 129


>gi|313679818|ref|YP_004057557.1| BadM/Rrf2 family transcriptional regulator [Oceanithermus profundus
           DSM 14977]
 gi|313152533|gb|ADR36384.1| transcriptional regulator, BadM/Rrf2 family [Oceanithermus
           profundus DSM 14977]
          Length = 147

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +    P  + ++AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRGPDPVPLKEVAEAQGISQHYLEQIAAALRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP ++I  L+VV+  E S     C       C   G C    + R+   A  +
Sbjct: 61  RGGYRLARPPEEINALEVVETMEGSLSPVGCIEDPG-SCEHEGQCSTELLWRRVDLAIRE 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 120 VLGSTNLQHLIDERRLIE 137


>gi|56962129|ref|YP_173852.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|81367334|sp|Q5WL64|NSRR_BACSK RecName: Full=HTH-type transcriptional regulator nsrR
 gi|56908364|dbj|BAD62891.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 149

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R+L+Y A+   +  + + Q+A+   IS   L K+   L K G++ET++G
Sbjct: 1   MQLTSYTDYSLRLLLYLALQPKHKLSSVKQVADIYRISYNHLTKVTHELGKLGLIETIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I +VVK TE++  + ECF      C L  +C L  VL +AL A+ 
Sbjct: 61  RNGGIRLAKEPEEINIGEVVKQTEDNLELVECFNRETNTCILNPACRLKGVLHEALAAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL QY+++ LV N   ++ +  
Sbjct: 121 QVLEQYTVKDLVLNEDDLRALLQ 143


>gi|295695737|ref|YP_003588975.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
 gi|295411339|gb|ADG05831.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
          Length = 136

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 12/133 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YGI +++  AI+  D P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKLSTRGRYGITLMVDLAINSGDQPVSLKSIAERQNLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +PA +IT  D+V+  E    V E               GL  +  +  +A  
Sbjct: 61  AYGGYVLAKPAQEITAGDIVRVLEGPITVVE-----------DEPTGLRRLWDEVRDAIN 109

Query: 120 DVLTQYSIECLVR 132
            VL + ++  L  
Sbjct: 110 AVLDRTTLADLAE 122


>gi|207725261|ref|YP_002255657.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
 gi|206590495|emb|CAQ37457.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
          Length = 193

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116
             GG  L R AD +T+ D++ A +E     +C    K +C      G C    +      
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + L   S++ LV  +   + 
Sbjct: 119 KMVEYLDSVSLQDLVDQQRERQP 141


>gi|119469041|ref|ZP_01612025.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Alteromonadales bacterium
           TW-7]
 gi|119447293|gb|EAW28561.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Alteromonadales bacterium
           TW-7]
          Length = 163

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I++ D++ A +ES     C  +    C     C   ++         
Sbjct: 61  PGGGYLLGREAGVISVGDIITAVDESVDATRCQGA-NTGCQSGMRCLTHNLWSDLSARIE 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   ++  LV  +S +K+I
Sbjct: 120 EFLNSITLAELVE-KSDVKEI 139


>gi|315125526|ref|YP_004067529.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913]
 gi|315014039|gb|ADT67377.1| transcriptional repressor of the iscRSUA operon, involved in
           assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913]
          Length = 163

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHANIGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD I++ DV+ A +ES     C       C     C   ++         
Sbjct: 61  PGGGYLLGREADVISVGDVINAVDESVDATRC-QRSNTGCQSGMRCLTHTLWSDLSARIE 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   ++  LV  +S +K +
Sbjct: 120 EFLNNITLAELVE-KSDVKAV 139


>gi|238916580|ref|YP_002930097.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
 gi|238871940|gb|ACR71650.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
          Length = 143

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A HN      +  IA    ISE +L  I+  L K   + ++RG
Sbjct: 1   MKISTKGRYALRVMIDLAEHNTGEYIPLMDIARRQDISEKYLEAIVATLSKNDFLISLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L R  +  ++L ++  TE S     C       CP V  C    +         
Sbjct: 61  KGGGYKLARNPEDYSVLSILLVTEGSLAPVACLEKKPNRCPKVAECKTLQMWENFEKLVN 120

Query: 120 DVLTQYSIECLVRNRSSI 137
           D  +  +I  LV +   I
Sbjct: 121 DYFSNITIADLVNSNVGI 138


>gi|149927875|ref|ZP_01916126.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
 gi|149823497|gb|EDM82728.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
          Length = 163

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALQQDTGPVSLAGISQRQNISLSYLEQLFSKLRRHELVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  + R   ++++ DV+ A +E     +C    K +C   G C    +         
Sbjct: 61  PGGGYHIARALKEVSVADVILAVDEPLDATQC--GGKENCTDEGQCMTHDLWSSLNTKML 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   +++CLV     
Sbjct: 119 EYLGSVTLQCLVEKHKQ 135


>gi|294670388|ref|ZP_06735270.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307852|gb|EFE49095.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 149

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT++TDY +RVL Y A +++    I+ IAE   IS   L K+   LVK G +++VRG+
Sbjct: 1   MYLTQQTDYALRVLTYAAANSEGLVNIATIAEVYGISRSHLMKVATALVKGGFLDSVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R  ++I I DVV+  E    + EC  +    C L   C L+++L +A  AF  
Sbjct: 61  GGGLRLSRSEEEIVIGDVVRHME-PMKLVECMGADN-RCLLTSCCRLSNILNEAGQAFLA 118

Query: 121 VLTQYSIECLVRNRS 135
            L ++++  L+   +
Sbjct: 119 HLDKFTLSDLINQPT 133


>gi|332283993|ref|YP_004415904.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
 gi|330427946|gb|AEC19280.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
          Length = 171

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ IA+   IS  +L ++   L +  +V+++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQHSGPVTLAAIAQRQNISLSYLEQLFGKLRRHKLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALN 116
             GG  L R A  IT+ D++ A +E      C      +    GS   C    +      
Sbjct: 61  PGGGYSLARLARNITVADIIFAVDEPLDATSCGGKENCNVGRNGSTGKCMTHELWSNLNR 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
              D L   S++ LV ++  ++++  A
Sbjct: 121 KMVDYLDSVSLQDLV-DQQRMRQLHEA 146


>gi|148546115|ref|YP_001266217.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida F1]
 gi|148510173|gb|ABQ77033.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida F1]
          Length = 182

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 20  MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + I +  V+ A  ES     C      DC    +C    +         
Sbjct: 80  PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV+ R 
Sbjct: 138 EFLSGISLADLVKRRD 153


>gi|261367832|ref|ZP_05980715.1| iron-sulfur cluster assembly transcription factor IscR
           [Subdoligranulum variabile DSM 15176]
 gi|282570636|gb|EFB76171.1| iron-sulfur cluster assembly transcription factor IscR
           [Subdoligranulum variabile DSM 15176]
          Length = 138

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R  Y +R+++  A H D    + +I++   IS  +L +I+ PL KAG+V +VRG 
Sbjct: 1   MKFSTRDRYALRLMVELANHGDGLVPLKEISDTQQISLKYLEQIITPLAKAGLVTSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL RP ++IT  ++++A E       C  +  ++CP    C          +    
Sbjct: 61  QGGYRLARPEEEITAGEILRAVEGELTAIPCLGA-NMECPRRDQCQTIGFWCGLNDLINQ 119

Query: 121 VLTQYSIECL 130
            +   ++  L
Sbjct: 120 YVDGVTLAAL 129


>gi|134095421|ref|YP_001100496.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Herminiimonas arsenicoxydans]
 gi|133739324|emb|CAL62374.1| Iron-sulfur cluster assembly transcription factor IscR
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116
             GG  L R A+ +T+ D++ A +E     +C        P     G C    +      
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
              D L   S++ LV  +  
Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140


>gi|319943706|ref|ZP_08017987.1| iron-sulfur cluster assembly transcription regulator IscR
           [Lautropia mirabilis ATCC 51599]
 gi|319742939|gb|EFV95345.1| iron-sulfur cluster assembly transcription regulator IscR
           [Lautropia mirabilis ATCC 51599]
          Length = 172

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+   + P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHNGPVTLAGISQRQKISLSYLEQLFGKLRRHQLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RP+  I +  ++ A +E     +C    K DC   G C    +         
Sbjct: 61  PGGGYSLARPSQDINVSSIIFAVDEPLDATQC--GGKQDCFEDGPCMTHELWTSLNKRMI 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   S++ LV  +   ++
Sbjct: 119 DYLDSVSLQDLVEQQRMREQ 138


>gi|332992276|gb|AEF02331.1| BadM/Rrf2 family transcriptional regulator [Alteromonas sp. SN2]
          Length = 161

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ I+E   IS  +L ++   L K  +V++VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHSTRGPVPLADISERQAISLSYLEQLFSRLRKNQLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I+I +V++A +ES     C    + DC     C   S+ +   +   
Sbjct: 61  PGGGYLLGRDAANISIGEVIRAVDESVDATRC--QGQADCQSGDRCLTHSLWQYLSDRIS 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  L+  R 
Sbjct: 119 SFLNDITLGELMAKRD 134


>gi|207743635|ref|YP_002260027.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
 gi|206595034|emb|CAQ61961.1| protein of unknown function upf0074 [Ralstonia solanacearum
           IPO1609]
          Length = 193

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116
             GG  L R AD +T+ D++ A +E     +C    K +C      G C    +      
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + L   S++ LV  +   + 
Sbjct: 119 KMVEYLDSVSLQDLVDQQRERQP 141


>gi|169632345|ref|YP_001706081.1| hypothetical protein ABSDF0414 [Acinetobacter baumannii SDF]
 gi|169151137|emb|CAO99806.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 148

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K G + T+RG 
Sbjct: 4   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQGWIITIRGN 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 121 SLDQYTLGEVLQQPKS 136


>gi|154484576|ref|ZP_02027024.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
           27560]
 gi|149734424|gb|EDM50341.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
           27560]
          Length = 151

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A ++      +  +AE   IS  +L  I+  L K  +V++ RG
Sbjct: 16  MMISTKGRYALRVMIDLAQNDGESFVSLKDVAERQGISMKYLEMIVSLLHKGHMVKSQRG 75

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +   + TI  ++K TE +     C       C     C    + +K  +   
Sbjct: 76  KAGGYKLVKKPAEYTIGSILKLTEGTLAPVGCLEEGAEKCDRATECITLPLWKKLDDQID 135

Query: 120 DVLTQYSIECLVRNR 134
           + L   ++E LV  R
Sbjct: 136 EYLESVTLEDLVEGR 150


>gi|327481765|gb|AEA85075.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           stutzeri DSM 4166]
          Length = 163

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C       C    +C    +         
Sbjct: 61  PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L+  S+  LV NR  ++++
Sbjct: 119 EFLSGISLADLV-NRQDVQQV 138


>gi|320334616|ref|YP_004171327.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755905|gb|ADV67662.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 156

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+           +  +A    +S+ +L +I   L +AG + +VRG 
Sbjct: 1   MWISTKAQYGLRALVEIGRRPGEAVPLKDVAANQGLSQHYLEQIASNLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L R  D I   DVV A E S     C       C   G C    + ++   A   
Sbjct: 61  HGGYKLTRTPDLINTWDVVVAMEGSLAPVACVEEGH-SCEREGVCATQDLWQRVEGAVRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   ++  L+R    I+
Sbjct: 120 VLGGTTLADLIRENERIE 137


>gi|283852450|ref|ZP_06369719.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572188|gb|EFC20179.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 150

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A      P     IA++  I + FL  IL  L + G V++ RG
Sbjct: 1   MAVTQKCQYALRALFELARRKGQGPVPAGGIADSQAIPKRFLEVILHQLRQGGFVDSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RPA  +T+ +V++  +      +C       DCPL G C    +   A  A 
Sbjct: 61  KEGGFYLARPAASVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGRCVFRGLWDDARAAL 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             V    ++E LV     ++
Sbjct: 121 VQVYDTRTLEDLVEEERRLE 140


>gi|193078481|gb|ABO13483.2| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 118 SLDQYTLGEVLQQPKS 133


>gi|332532350|ref|ZP_08408230.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038217|gb|EGI74663.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 163

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I++ D++ A +ES     C  +    C     C   ++         
Sbjct: 61  PGGGYLLGREAGVISVGDIISAVDESVDATRCQGAD-TGCQSGMRCLTHNLWSDLSARIE 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   ++  LV  +S +K+I
Sbjct: 120 EFLNNITLAELVE-KSDVKEI 139


>gi|330721810|gb|EGG99788.1| Nitrite-sensitive transcriptional repressor NsrR [gamma
           proteobacterium IMCC2047]
          Length = 142

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY  RVL+Y + +     + + +IAE   +    L K++Q L KAG + T+RG
Sbjct: 1   MQLTRHTDYAFRVLIYLSSVEEGKLSTVGEIAEIFQVPINHLTKVVQQLGKAGFIITLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL    + I +  VV+A E +     C    +  C L  +C L  +L +A+ +F 
Sbjct: 61  KNGGIRLAHDPESILLGSVVRAMEATLDPVNCS---QPLCRLKINCRLKPILNRAIQSFI 117

Query: 120 DVLTQYSIECLVRNRS 135
           + L +Y++  + +N+ 
Sbjct: 118 ETLDEYTLADISQNKE 133


>gi|312962917|ref|ZP_07777404.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens WH6]
 gi|311282944|gb|EFQ61538.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens WH6]
          Length = 225

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 63  MRLTTKGRYAVTAMLDLALHAQAGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES    +C      DC    +C    +         
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 181 EFLSGISLADLVTRRE 196


>gi|26987577|ref|NP_743002.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           KT2440]
 gi|24982253|gb|AAN66466.1|AE016276_1 rrf2 family protein [Pseudomonas putida KT2440]
          Length = 163

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV+ R 
Sbjct: 119 EFLSGISLADLVKRRD 134


>gi|91775163|ref|YP_544919.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709150|gb|ABE49078.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
           flagellatus KT]
          Length = 156

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLALNEEEKPVTLAGISERQGISLSYLEQLFSRLRRNGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +   +I++ D++ A +E     +C    K +C     C    +         
Sbjct: 61  PGGGYRLTKNHHEISVSDIITAVDELIDATQC--GGKENCHEGKPCMTHDLWSSLNAKIL 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L+  ++  LV ++   K+I
Sbjct: 119 EYLSGVALSDLVASQREGKEI 139


>gi|295695250|ref|YP_003588488.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
 gi|295410852|gb|ADG05344.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
           2912]
          Length = 155

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ RT+YG+R L+  A  +   P    QIAE   I E FL +I+  L +AGIV++VRG
Sbjct: 1   MKLSNRTEYGLRALVTLAERSGGAPMSTRQIAEIEGIPEPFLDQIMVLLRRAGIVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
             GG  L +  D++++ +VV+  E S  +  C      D  C     C    V  K    
Sbjct: 61  VNGGFLLAQSPDRVSVGEVVRVLEGSLLLIGCVDEENGDMWCERTPICHTRKVWVKLNEG 120

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L   ++  +V       +
Sbjct: 121 ITKALGSLTLAEVVETEEPTSQ 142


>gi|91784249|ref|YP_559455.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91688203|gb|ABE31403.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           xenovorans LB400]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|53803005|ref|YP_115276.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53756766|gb|AAU91057.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 162

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A H++  P  ++ IA+   IS  +L ++   L +AG+VE VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLAYHSETNPVTLTDIAKRQNISLSYLEQLFARLRRAGMVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A +I I +++ A +E      C    K +C     C    +         
Sbjct: 61  PGGGYQLSRCASEINIAEIIAAVDEPIDSTRC--GGKANCQNNQPCLTHDLWMGLSEQIR 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   S+  ++  R  ++++
Sbjct: 119 EYLASISLGEVLT-RQPVRQV 138


>gi|297566014|ref|YP_003684986.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
           DSM 9946]
 gi|296850463|gb|ADH63478.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
           DSM 9946]
          Length = 151

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ ++ YG+R L+   +       +  +AEA  IS+ +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKSQYGLRALVEIGLRAPEAVPLKDVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L +P +++T L+VV+A E S     C    +  C   G C   ++ ++   A   
Sbjct: 61  KGGYKLGKPPEKLTALEVVEALEGSLAPVTCLDDPE-SCYHTGHCSTEALWKRVDLAMRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   S++ L+  R  I+
Sbjct: 120 VLGSTSLKDLIEQRRIIE 137


>gi|304437228|ref|ZP_07397188.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369720|gb|EFM23385.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 147

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+        +  IA    ISE +L +++ PL +AG+VE+VRG
Sbjct: 1   MKLSTKGRYSVTALYELALRYGKGVIPLHAIAATQGISEHYLEQLMVPLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
            +GG  L  P ++ITI  ++ A E    + +C      +    C   G+C    +  +  
Sbjct: 61  AQGGYTLALPPEKITIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           ++   VL   ++  LV+ 
Sbjct: 121 DSINSVLNNIALSDLVQR 138


>gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly transcription factor
           [Janthinobacterium sp. Marseille]
 gi|151281667|gb|ABR90077.1| iron-sulfur cluster assembly transcription factor
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116
             GG  L R A+ +T+ D++ A +E     +C        P     G C    +      
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120

Query: 117 AFFDVLTQYSIECLVRNRSS 136
              D L   S++ LV  +  
Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140


>gi|313114322|ref|ZP_07799857.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623377|gb|EFQ06797.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 143

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  + H  +    + +IA    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLSEHQSEKYVPLKEIAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C   +   C  + +C    + +   +   
Sbjct: 61  KGGGYRLTRSPDQYTVGEILMLTEGSLAPVSCLTPNATPCSRMANCRTYEMWKGLDDLIS 120

Query: 120 DVLTQYSIECLVRNRSS 136
           +     ++  L R   +
Sbjct: 121 NYFGNITLADLARPDQA 137


>gi|254476056|ref|ZP_05089442.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030299|gb|EEB71134.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 137

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 71/129 (55%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MYCA ++D     S+IAE C ISE  L +++  L + G + T RGR GG+ L RPA +I 
Sbjct: 1   MYCAANSDRLVTKSEIAERCNISENHLAQVINQLAQLGYLRTQRGRNGGMSLGRPAGKIG 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I DV +  E +  + ECFA     CPLV +C L   L  A  AF+  L   ++E LV + 
Sbjct: 61  IGDVFRDVEGTVPMVECFADADNTCPLVSACRLRVALADAAQAFYRSLDGITLEALVCDN 120

Query: 135 SSIKKIFNA 143
             +  +F A
Sbjct: 121 DELFALFQA 129


>gi|144899516|emb|CAM76380.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 154

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  + H    P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLSTKGRYAVMAMVDLSSHSQGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L RPA Q+ I D++ A +E      C       C    G C    +  +  N  
Sbjct: 61  PGGGYLLSRPAVQMRISDIILAVDEPIQTTRCSPGSPAGCHHNKGRCLTHDLWEELGNQI 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L+  S+  +   R
Sbjct: 121 YLYLSAVSLADVCERR 136


>gi|330831524|ref|YP_004394476.1| Rrf2 family protein [Aeromonas veronii B565]
 gi|328806660|gb|AEB51859.1| Rrf2 family protein [Aeromonas veronii B565]
          Length = 150

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFGISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           +VL +Y++   VR+ + +  +  
Sbjct: 118 EVLGEYTLADAVRDPNRLCHLLG 140


>gi|251792922|ref|YP_003007648.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter aphrophilus NJ8700]
 gi|247534315|gb|ACS97561.1| iron-sulfur cluster assembly transcription factor IscR
           [Aggregatibacter aphrophilus NJ8700]
          Length = 156

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI+ ND P  +S I+E   IS  +L ++   L +  IV++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIAIYANDGPVSLSDISERQHISLSYLEQLFAKLRRNNIVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    ++I+I  V+ A  E+    +C    K +C     C   ++  K      
Sbjct: 61  PGGGYKLGYTPNEISIGMVIAAVNENIETTKCLG--KGNCQNGAECLTHTLWEKLSLRIA 118

Query: 120 DVLTQYSIECLVRN 133
           D L + ++  LV  
Sbjct: 119 DFLNEITLAELVSQ 132


>gi|197117656|ref|YP_002138083.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197087016|gb|ACH38287.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 137

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A         IS+IA A  + + FL KI Q   K G+V + RG
Sbjct: 2   MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA QIT+ +VV+A E       C       C   G C +  V ++      
Sbjct: 62  TGGGFVLARPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTEVV 119

Query: 120 DVLTQYSIECLVRNRSS 136
            +L   +I+ L R+   
Sbjct: 120 RILDGVTIDSLARSPEQ 136


>gi|163742862|ref|ZP_02150246.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161383826|gb|EDQ08211.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
          Length = 151

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 74/143 (51%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K +DY +R+L++ + H +      +IAE   +    L KI Q L   G VE+VRGR
Sbjct: 1   MQISKFSDYALRILIHLSTHEEGLMSTREIAEMQKLPFNHLAKISQWLTHEGYVESVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+  P + I+I  +++ +E    + EC       C +  +CGL  +L +A   FF 
Sbjct: 61  NGGMRMALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILTEAQEVFFA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   +++ ++     +K +  A
Sbjct: 121 ALDSKTLQNVLEGNRGMKNLIRA 143


>gi|229592453|ref|YP_002874572.1| hypothetical protein PFLU5069 [Pseudomonas fluorescens SBW25]
 gi|229364319|emb|CAY52066.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 225

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 63  MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES    +C      DC    +C    +         
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 181 EFLSGISLADLVTRRE 196


>gi|254518111|ref|ZP_05130167.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911860|gb|EEH97061.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 132

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+L+K TDY  R L+Y A + D    + ++A+   ISE  L KI+  L K  +V +++GR
Sbjct: 1   MYLSKFTDYSFRALVYLAENRDKLCTVEELAKKLEISEHHLKKIIHKLAKTDLVISMKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAFF 119
            GG++L      I + +VV+ TE++  +A+CF+     CP +   C L  ++ ++L+AF 
Sbjct: 61  TGGLKLGLEPQDINLGEVVRITEDNLNIAQCFSKEDC-CPFITSGCKLKGIMNESLSAFL 119

Query: 120 DVLTQYSIECLV 131
              ++Y+++ L+
Sbjct: 120 HEFSRYTLQDLL 131


>gi|296158336|ref|ZP_06841167.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
 gi|295891280|gb|EFG71067.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
          Length = 176

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|262373529|ref|ZP_06066807.1| transcriptional regulator [Acinetobacter junii SH205]
 gi|262311282|gb|EEY92368.1| transcriptional regulator [Acinetobacter junii SH205]
          Length = 150

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  ++ P  I+ IA+   +S+  L KI+  + K   + T RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSEIPYTIADIAKDLHVSQNHLVKIVHFMGKQQWIVTTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPSARTLRLGEIVRVLQGHQQIVEC---NTPPCVLRSQCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  +V++
Sbjct: 118 SLDQYTLGEVVQH 130


>gi|153810455|ref|ZP_01963123.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
 gi|149833634|gb|EDM88715.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
          Length = 144

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ L+   +H +     I  IA    IS+ +L +++  L KAG+V++ RG
Sbjct: 1   MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG RL RPA +I++ DV++  E S   A+C     +  C     C    V ++  ++ 
Sbjct: 61  AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              +    ++ L+      ++
Sbjct: 121 TQAVDTMMLDQLIEESRKKQQ 141


>gi|83647156|ref|YP_435591.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
           chejuensis KCTC 2396]
 gi|83635199|gb|ABC31166.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
           chejuensis KCTC 2396]
          Length = 159

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+    IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLRRSRLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L RP  +  + ++++A  ES     C    K DC     C    + +       
Sbjct: 61  PGGGYKLARPLGETAVAEIIEAVNESIDATRC--GRKGDCQGGEICLTHHLWQDLSERIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  S+E LV +R+
Sbjct: 119 DYLSSISLEELVASRA 134


>gi|187924557|ref|YP_001896199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Burkholderia phytofirmans PsJN]
 gi|187715751|gb|ACD16975.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           phytofirmans PsJN]
          Length = 176

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|33596274|ref|NP_883917.1| putative DNA-binding protein [Bordetella parapertussis 12822]
 gi|33602066|ref|NP_889626.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33566043|emb|CAE36939.1| putative conserved DNA-binding protein [Bordetella parapertussis]
 gi|33576504|emb|CAE33582.1| putative conserved DNA-binding protein [Bordetella bronchiseptica
           RB50]
          Length = 156

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD+G+RV+MY     D   P  I +IA    IS   L K++  L + G +   R
Sbjct: 12  MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 71

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A +  I ++V+  E+   +  C    +  C L G+C L+  L ++L AF
Sbjct: 72  GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 128

Query: 119 FDVLTQYSIECLVRNRSSI 137
           +  L  Y+++ LVR  +++
Sbjct: 129 YRTLDGYTLDDLVRAPTAL 147


>gi|295676942|ref|YP_003605466.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
 gi|295436785|gb|ADG15955.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
          Length = 176

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+++T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEEVTVADIIIAVDEPLDATQC--GGKGTCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|255066423|ref|ZP_05318278.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sicca ATCC 29256]
 gi|255049303|gb|EET44767.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sicca ATCC 29256]
          Length = 148

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  QI I  ++ A E+     +C  S K +C     C    +         
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L+  +++ ++  ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135


>gi|148264218|ref|YP_001230924.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146397718|gb|ABQ26351.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 137

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A         IS+IA A  + + FL KI Q   K GIV + RG
Sbjct: 2   MELTRKGEYAIRGIIYLAQQQPGKVSLISEIAHASDVPQTFLAKIFQSFAKLGIVNSSRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA  IT+ +VV+A E       C       C   G C +  V R   +   
Sbjct: 62  TGGGFTLGRPAASITLREVVEAVEGPIIPNRCLMGTGY-CDRGGHCNVHQVWRTVQSQVV 120

Query: 120 DVLTQYSIECLVRNRS 135
           ++L   +IE L + + 
Sbjct: 121 NILDSVTIEELAKQKQ 136


>gi|299768660|ref|YP_003730686.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
 gi|298698748|gb|ADI89313.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
          Length = 145

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPDALNCNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 118 SLDQYTLGEVLQQSKS 133


>gi|291619084|ref|YP_003521826.1| YjeB [Pantoea ananatis LMG 20103]
 gi|291154114|gb|ADD78698.1| YjeB [Pantoea ananatis LMG 20103]
 gi|327395416|dbj|BAK12838.1| transcriptional regulator YjeB [Pantoea ananatis AJ13355]
          Length = 152

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       I+++ +   +S   + KI+  L +AG V  +RG+
Sbjct: 7   QLTSFTDYGLRALIYMATLPEGRLTNITEVTDTYGVSRNHMVKIINQLSRAGFVSAIRGK 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  I I +VV+  E    + +C      +C +  +C L   L  A+  F  
Sbjct: 67  NGGIRLGMSARDIVIGEVVRKME-PLQLVDC-----SNCSIAPACRLKKALHDAVQLFLQ 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  LV   + + +I 
Sbjct: 121 ELDGYTLADLVEGNTPLYEII 141


>gi|209519995|ref|ZP_03268774.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
 gi|209499592|gb|EDZ99668.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
          Length = 176

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGTCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|84393609|ref|ZP_00992361.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
 gi|84375750|gb|EAP92645.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
          Length = 147

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y AI+N   + I  IA +  IS+  L KI+Q L   G +   RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L     QI I  +V+  E+   + ECF      C +  +C L ++  +A   F+ 
Sbjct: 61  NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFYK 119

Query: 121 VLTQYSIECLVRNRSSIK 138
            L  YS++ L+    S K
Sbjct: 120 SLDAYSLQDLLGEGHSYK 137


>gi|299531825|ref|ZP_07045227.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
 gi|298720266|gb|EFI61221.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
          Length = 153

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+LM+ A   +    IS++A+A  ISE  L K+   L   G +ETVRG+
Sbjct: 1   MRLTLMTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   QI I  V++  E  F + ECF +    C L G C L  +L+ AL++F  
Sbjct: 61  GGGMRLAREPKQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMA 119

Query: 121 VLTQYSIECLV 131
            L  +++  L+
Sbjct: 120 HLDGFTLADLI 130


>gi|261856769|ref|YP_003264052.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261837238|gb|ACX97005.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 167

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+   P  ++ IA+   +S  +L ++   L +AG+V++VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHDHGDPTALADIADRQELSLSYLEQLFAQLRRAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L RP+ +I + ++V A +E   V  C  S + DC     C    +         
Sbjct: 61  PGGGYQLTRPSTEINVAEIVIAVDEDVDVTRC--SGRGDCQNGHKCLSHDLWMGLSEQIR 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             LT   +  L+ N   I
Sbjct: 119 SFLTGIHLADLLNNPELI 136


>gi|189424306|ref|YP_001951483.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter lovleyi SZ]
 gi|189420565|gb|ACD94963.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
          Length = 134

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ DY IR ++Y A        + S+IA A  + + FL KI Q   K GIV++ RG
Sbjct: 2   MELTRKGDYAIRGIIYLASQPPNKISLLSEIAVAVDVPQTFLAKIFQQFSKTGIVKSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P + IT+L VV+A E       C      +C    SC +  V R+      
Sbjct: 62  TGGGFLLAGPPESITLLQVVEAVEGPILPNRCVL-KPGECERDASCTVHPVWRQVQQQVR 120

Query: 120 DVLTQYSIECLV 131
            +L   +++ L 
Sbjct: 121 SILAGITLKDLA 132


>gi|166031726|ref|ZP_02234555.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
           27755]
 gi|166028179|gb|EDR46936.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
           27755]
          Length = 155

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R ++  A  ++  P  I  IA    +SE +L ++   L KAG+V+++RG 
Sbjct: 5   KLSTKGKYGLRAIIDLARFSEKEPVSIGCIATRQKLSERYLEQLFALLKKAGLVKSIRGA 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L R A +I++ DV++A E +     C A   +  C     C    V +K  ++  
Sbjct: 65  SGGYVLARDASEISVGDVLRALEGNLEPVRCAAFYSEEGCMASDECVTKYVWQKINDSIN 124

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             + +  ++ LV+    +  
Sbjct: 125 KTVNEIKLDELVKESKELNP 144


>gi|120611113|ref|YP_970791.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|326317578|ref|YP_004235250.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120589577|gb|ABM33017.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
           AAC00-1]
 gi|323374414|gb|ADX46683.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 178

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|170694738|ref|ZP_02885889.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
 gi|170140369|gb|EDT08546.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
          Length = 176

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|192359869|ref|YP_001981952.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
           japonicus Ueda107]
 gi|190686034|gb|ACE83712.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
           japonicus Ueda107]
          Length = 162

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  ++ I+    IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDSGPVSLADISARQGISLSYLEQLFARLRQFNLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L      I++  VV A  ES     C    K +C     C    + +       
Sbjct: 61  PGGGYQLASSTCDISVAQVVDAVSESLDATRC--EGKGNCQEGEVCLTHHLWQDLSAQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   S+  LV  RS I+ +
Sbjct: 119 QFLNSISLADLVA-RSDIQAV 138


>gi|257792249|ref|YP_003182855.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|317490177|ref|ZP_07948665.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325833540|ref|ZP_08165989.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
 gi|257476146|gb|ACV56466.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|316910671|gb|EFV32292.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325485464|gb|EGC87933.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
          Length = 136

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y +R+++  A   +      + Q AE   +S  +L ++   LVKAG++++VR
Sbjct: 1   MMISTRGRYALRLMIDIARQGEAGALVTMRQAAEREDLSVKYLEQLGGALVKAGVLKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RPADQIT  DV++ATE S     C       CP    C   +  R    A 
Sbjct: 61  GVSGGYLLARPADQITAGDVLRATEGSCAPVSCLEDGAEACPRRDQCVAINFWRGLDQAI 120

Query: 119 FDVLTQYSIECLVR 132
            D +   ++  LV+
Sbjct: 121 EDYVDNVTLADLVQ 134


>gi|291614830|ref|YP_003524987.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
           lithotrophicus ES-1]
 gi|291584942|gb|ADE12600.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
           lithotrophicus ES-1]
          Length = 152

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 72/138 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A        I++I++   IS   L K++  L     + T RG+
Sbjct: 1   MRLTIYTDYSLRVLLYLASKPGETATITEISDFYNISRNHLVKVVHNLGLNEFIITSRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L R A+ I + DVV+ TE    + ECF     +C +  +C L S+L +  +AF  
Sbjct: 61  NGGIKLARAAEAILLSDVVRKTEPDMDLLECFNESTDNCVISSACRLKSMLYEGRSAFMA 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL + ++    R  +  +
Sbjct: 121 VLEKNTLADAARPLAQAR 138


>gi|163856927|ref|YP_001631225.1| putative DNA-binding protein [Bordetella petrii DSM 12804]
 gi|163260655|emb|CAP42957.1| putative conserved DNA-binding protein [Bordetella petrii]
          Length = 145

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY    +D   P  I +IA    +S   + K++  L + G V T R
Sbjct: 1   MQLTRYTDFGLRVLMYLTQGDDRAVPATIPEIAARFNVSRNHMVKVVHFLARQGWVATTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL  P     + D+V+A E    +  C    +  C L G C L+ VL  +L  F
Sbjct: 61  GKGGGLRLAHPPSAYRVGDLVRALEHQGALINCA---EPPCALNGLCRLSGVLADSLQVF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D L ++++  LVR+ ++
Sbjct: 118 YDALNRHTLADLVRSPTA 135


>gi|78484962|ref|YP_390887.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363248|gb|ABB41213.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 142

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P  ++ I+E   IS  +L +I   L K+G+V + RG
Sbjct: 1   MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLKKSGLVLSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A++I++ +V+ A  E     +C    K +C     C    +         
Sbjct: 61  PGGGYRLSRDANEISVSEVIGAVNEDLEPRKC--RGKSNCQNGVQCLSHELWADLSGMIN 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L   +++ ++  RSSI+ +
Sbjct: 119 EFLDGVTLQQIIDRRSSIQSV 139


>gi|266624781|ref|ZP_06117716.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
 gi|288863341|gb|EFC95639.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           hathewayi DSM 13479]
          Length = 139

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A    D    + +IA    ISE +L  +++ LV+  ++  +RG
Sbjct: 1   MMISTRGRYALRVMLDLAQQTTDRYVPLKEIANRQEISEKYLEIVIKVLVQNKLLTGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R   + T+ ++++ TE S     C      +C   G C    V ++      
Sbjct: 61  KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACAEESYTECSRRGFCLSRPVWQELDKIIN 120

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   ++E L+++   
Sbjct: 121 EYLDGITLEDLLKSPQK 137


>gi|332289844|ref|YP_004420696.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
           UMN179]
 gi|330432740|gb|AEC17799.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
           UMN179]
          Length = 156

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++    P  ++ I+E   IS  +L ++   L + G+V++ RG
Sbjct: 1   MKLTSKGRYAVTAILDIALNAGSGPVTLADISERQKISLSYLEQLFAKLRRHGLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L   +++I+I  ++ A  E+    +C +  K +C     C   S+ +K  +   
Sbjct: 61  PGGGYQLGYASEEISIGMIISAVNENVQATKCKS--KGNCQDGVQCLTHSLWQKLSDRIE 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L + ++  LV ++    +
Sbjct: 119 DFLNEITVAELVSSQQEKMQ 138


>gi|326794498|ref|YP_004312318.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Marinomonas mediterranea MMB-1]
 gi|326545262|gb|ADZ90482.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas
           mediterranea MMB-1]
          Length = 166

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+D  P  +S I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHSDKGPVSLSDISARQGISLSYLEQLFAKLRKQSLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I +  +V A  ES     C    + DC    +C    +     +   
Sbjct: 61  PGGGYLLSRERSDIFVAQIVDAVNESVDATGC--RGRSDCQGGTTCLTHHLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  S+E LV+ + 
Sbjct: 119 DFLSGISLEKLVQRKD 134


>gi|186476217|ref|YP_001857687.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192676|gb|ACC70641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
           STM815]
          Length = 174

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115
             GG  L R A+ +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAEDVTVADIIIAVDEPLDATQC--GGKGSCEGTKHHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + S
Sbjct: 119 QKMVEYLDSVSLKDLVDQQRS 139


>gi|210635349|ref|ZP_03298496.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
 gi|210158434|gb|EEA89405.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
          Length = 160

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H D     + QIA    ISE +L  IL  LV+ G++  +RG
Sbjct: 15  MLVSTKGRYALRVMVDLAEHRDEGRIPLRQIAVRQDISEKYLENILSTLVRHGMLSGLRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L R  ++ T+ ++++ TE S     C       C    +C    V  +      
Sbjct: 75  KGGGYCLTREPEEFTLGEILRLTEGSLSPVSCLNGPHNTCERAATCRTVRVWTELDRMIQ 134

Query: 120 DVLTQYSIECLV 131
           + L   +I  L+
Sbjct: 135 EYLDGVTIADLM 146


>gi|53803301|ref|YP_114917.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53757062|gb|AAU91353.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 150

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD+ +RVL+Y     +     I +IAE   IS   L K++  L  AG++ T+RG
Sbjct: 1   MQLTQFTDFSLRVLIYLVRLPEPGMATIPEIAEYYRISRNHLVKVVNTLANAGLLVTMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPAD ITI +VV+ TE +  + ECF      C +   C L ++L +A   F 
Sbjct: 61  KGGGLRLARPADTITIAEVVRLTEPNMNLVECFDPKASHCRIDRGCFLKAILYEARKDFL 120

Query: 120 DVLTQYSIECLVR 132
             L ++++    R
Sbjct: 121 AALERHTLADAAR 133


>gi|33593212|ref|NP_880856.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33563587|emb|CAE42488.1| putative conserved DNA-binding protein [Bordetella pertussis Tohama
           I]
 gi|332382623|gb|AEE67470.1| putative DNA-binding protein [Bordetella pertussis CS]
          Length = 145

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L + TD+G+RV+MY     D   P  I +IA    IS   L K++  L + G +   R
Sbjct: 1   MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A +  I ++V+  E+   +  C    +  C L G+C L+  L ++L AF
Sbjct: 61  GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
           +  L  Y+++ LVR  +++
Sbjct: 118 YRTLDGYTLDDLVRAPTAL 136


>gi|261377488|ref|ZP_05982061.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           cinerea ATCC 14685]
 gi|269146218|gb|EEZ72636.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           cinerea ATCC 14685]
          Length = 148

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAIKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  QI I  ++ A E+     +C  S K +C     C    +         
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L+  +++ ++  ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135


>gi|319762894|ref|YP_004126831.1| iron-sulfur cluster assembly transcription factor iscr
           [Alicycliphilus denitrificans BC]
 gi|330824973|ref|YP_004388276.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117455|gb|ADU99943.1| iron-sulfur cluster assembly transcription factor IscR
           [Alicycliphilus denitrificans BC]
 gi|329310345|gb|AEB84760.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 178

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHDLWATLNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|167031899|ref|YP_001667130.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           GB-1]
 gi|166858387|gb|ABY96794.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           GB-1]
          Length = 182

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 20  MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + I +  V+ A  ES     C      DC    +C    +         
Sbjct: 80  PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 138 EFLSGISLADLVMRRE 153


>gi|16078003|ref|NP_388819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221308776|ref|ZP_03590623.1| hypothetical protein Bsubs1_05178 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313099|ref|ZP_03594904.1| hypothetical protein BsubsN3_05114 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318025|ref|ZP_03599319.1| hypothetical protein BsubsJ_05058 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322299|ref|ZP_03603593.1| hypothetical protein BsubsS_05159 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|6136719|sp|O07573|NSRR_BACSU RecName: Full=HTH-type transcriptional regulator nsrR
 gi|2226194|emb|CAA74483.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633273|emb|CAB12777.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 146

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A       + I QIAE   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF ++K  C +   CGL  VL +AL A+ 
Sbjct: 61  RGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  LV+N+  I K+ 
Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142


>gi|119898309|ref|YP_933522.1| Rrf2 family protein [Azoarcus sp. BH72]
 gi|119670722|emb|CAL94635.1| Rrf2 family protein [Azoarcus sp. BH72]
          Length = 160

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A    D P  ++ IA+   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLASRQADGPVTLAGIADRQKISLSYLEQLFGKLRRHKLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R    IT+ D++ A +E     +C    K +C     C    +        +
Sbjct: 61  PGGGYRLARDMAAITVADIIIAVDEPLDATQC--GGKQNCHDEHRCVTHDLWANLNKRMY 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S+  LV+  
Sbjct: 119 AYLDSVSLAALVQRE 133


>gi|121594494|ref|YP_986390.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|222110831|ref|YP_002553095.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|120606574|gb|ABM42314.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
 gi|221730275|gb|ACM33095.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
           TPSY]
          Length = 178

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|213158841|ref|YP_002320839.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|215482177|ref|YP_002324359.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|301345004|ref|ZP_07225745.1| hypothetical protein AbauAB0_02147 [Acinetobacter baumannii AB056]
 gi|301512065|ref|ZP_07237302.1| hypothetical protein AbauAB05_10807 [Acinetobacter baumannii AB058]
 gi|301596098|ref|ZP_07241106.1| hypothetical protein AbauAB059_09799 [Acinetobacter baumannii
           AB059]
 gi|332853133|ref|ZP_08434570.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332868621|ref|ZP_08438277.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
 gi|213058001|gb|ACJ42903.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|213988893|gb|ACJ59192.1| rrf2 family protein (transcriptional regulator) family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332728802|gb|EGJ60161.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332733298|gb|EGJ64492.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
          Length = 145

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 118 SLDQYTLGEVLQQPKS 133


>gi|260557021|ref|ZP_05829238.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409627|gb|EEX02928.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 148

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYVARPSDTPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 121 SLDQYTLGEVLQQPKS 136


>gi|82701807|ref|YP_411373.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82409872|gb|ABB73981.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 157

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H+ D P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALHSADGPVTLAGISERQKISLSYLEQLFGKLRRSKLVGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +P  +++++D++ A +E     +C    K +C     C    +         
Sbjct: 61  PGGGYRLTKPMSEVSVVDIILAVDEPIDATQC--GGKENCHNDQRCMTHDLWANLNARIR 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   ++E LV N  
Sbjct: 119 DYLALVTLEQLVSNPK 134


>gi|225025112|ref|ZP_03714304.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
           23834]
 gi|224942073|gb|EEG23282.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
           23834]
          Length = 173

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  + P  ++ I+    IS  +L ++   L +AG+VE+VRG
Sbjct: 22  MRLTTKGRFAVTAMLDLALYGRENPVSLNAISGRQNISLSYLEQLFGKLRRAGLVESVRG 81

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I I +++ A E+      C    + +C     C    +         
Sbjct: 82  PGGGYLLSRQPGSINIAEIIYAAEDKLDATRC--GGQTNCHKGAPCLTHDLWESLNQTIQ 139

Query: 120 DVLTQYSIECLVRNRSS 136
             L   S++ ++  R  
Sbjct: 140 GYLNSVSLQDVLNKRDG 156


>gi|291295978|ref|YP_003507376.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
           1279]
 gi|290470937|gb|ADD28356.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
           1279]
          Length = 159

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  YG+R L+   +       +  +AEA  IS  +L +I   L +AG + +VRG 
Sbjct: 1   MWVSTKAQYGLRALVEIGLRQPQAVPLKDVAEAQGISLHYLEQIAAQLRRAGFIRSVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL RP++ I  L+VV+A E S     C    ++ C   G C   ++ ++   A   
Sbjct: 61  RGGYRLGRPSEHIDALEVVEALEGSLAPVICLDDPEL-CWQTGHCSTETLWKRVDEAMRG 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +++ L+  R  I+
Sbjct: 120 VLRSTTLKDLIEERRLIE 137


>gi|77460834|ref|YP_350341.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384837|gb|ABA76350.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens Pf0-1]
          Length = 163

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES    +C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|294651640|ref|ZP_06728944.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822489|gb|EFF81388.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 150

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I+ IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGLRLNPEAKSLKLGEIVRTLQGHQHIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  ++++
Sbjct: 118 SLNQYTLGEVIQH 130


>gi|49080808|gb|AAT50060.1| PA3815 [synthetic construct]
          Length = 164

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  + 
Sbjct: 119 EFLSGISLADLVSRQE 134


>gi|15599010|ref|NP_252504.1| IscR [Pseudomonas aeruginosa PAO1]
 gi|107103335|ref|ZP_01367253.1| hypothetical protein PaerPA_01004404 [Pseudomonas aeruginosa PACS2]
 gi|116051840|ref|YP_789317.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987595|ref|YP_001346682.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           aeruginosa PA7]
 gi|218889901|ref|YP_002438765.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
 gi|254236719|ref|ZP_04930042.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387669|ref|ZP_06877144.1| putative Rrf2 family protein [Pseudomonas aeruginosa PAb1]
 gi|313109233|ref|ZP_07795201.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
 gi|9949989|gb|AAG07202.1|AE004799_8 IscR [Pseudomonas aeruginosa PAO1]
 gi|115587061|gb|ABJ13076.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168650|gb|EAZ54161.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|150962753|gb|ABR84778.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           aeruginosa PA7]
 gi|218770124|emb|CAW25886.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
 gi|310881703|gb|EFQ40297.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
          Length = 163

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  + 
Sbjct: 119 EFLSGISLADLVSRQE 134


>gi|184159604|ref|YP_001847943.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|239503240|ref|ZP_04662550.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|332876089|ref|ZP_08443873.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6014059]
 gi|183211198|gb|ACC58596.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|322509514|gb|ADX04968.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519534|gb|ADX93915.1| hypothetical protein ABTW07_3498 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735707|gb|EGJ66750.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6014059]
          Length = 145

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 118 SLDQYTLGEVLQQPKS 133


>gi|254242506|ref|ZP_04935828.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195884|gb|EAZ59947.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 163

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  + 
Sbjct: 119 EFLSGISLADLVSRQE 134


>gi|237750663|ref|ZP_04581143.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
 gi|229373753|gb|EEO24144.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
          Length = 139

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+K +DY  R L+Y A H++  N I  +A    IS+  L KI+  L K   ++T RGR
Sbjct: 1   MQLSKFSDYSFRALIYLAQHDNTLNTIENMASELRISQNHLKKIIHKLSKGQFIKTFRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG++L +    I + DV+  TE +    EC    S   +CP   +C L S++ KA NAF
Sbjct: 61  EGGIKLAKKPKDIGLADVLLYTEINTDFVECLKHNSKHTECPYQINCNLKSIIHKAKNAF 120

Query: 119 FDVLTQYSIECLVR 132
                +YS++ L++
Sbjct: 121 MQEFQKYSLQDLLQ 134


>gi|226953865|ref|ZP_03824329.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226835348|gb|EEH67731.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 150

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I+ IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + + ++V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGLRLNPEAKSLKLGEIVRTLQGHQQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRN 133
            L QY++  ++++
Sbjct: 118 SLNQYTLGEVIQH 130


>gi|46914863|emb|CAG21640.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 151

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT  TDYG+R L+Y A +       IS++ E   +S   + KI+  L + G V+TVRG+
Sbjct: 9   QLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRGK 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL  PA++I + DVV+ATE    +  C       C +  +C L  +L  A +AF  
Sbjct: 69  NGGIRLGMPANRIILGDVVRATE-PLQIVNCSEDF---CHITPACQLKGILASARSAFLA 124

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L ++++  L+ N   +  + +
Sbjct: 125 ELDKHTLLSLIDNNPPLLVLLD 146


>gi|237808765|ref|YP_002893205.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237501026|gb|ACQ93619.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 171

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 4   MRLTSKGRYAVTAMLDVALHAELGPVPLADISERQGISLSYLEQLFARLRKNGLVSSVRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   ADQI +  ++ A  ES     C       C     C   S+ R       
Sbjct: 64  PGGGYRLGADADQIAVGKIIAAVNESVDATRCHGESG--CQGGVQCLTHSLWRDLSARIS 121

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L + ++  LVR ++ +K+I
Sbjct: 122 DFLNEITLGELVR-QAEVKRI 141


>gi|332139491|ref|YP_004425229.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549513|gb|AEA96231.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
          Length = 150

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 76/136 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +   T+   RVL+Y A+  +   + S+IA+A  +S   L K++  L+  G +   +GR
Sbjct: 1   MKINTFTNLAFRVLIYLALRKNQTVKTSEIADAYFVSFNHLKKVITLLIDQGYIIGTKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + A+ I I +V + T E   +AECFAS    C +  +C L ++L+ A + F  
Sbjct: 61  GGGIRLAKEANLINIGEVFRLTIEDVALAECFASPTNKCVISPTCRLKTILQDAADKFIS 120

Query: 121 VLTQYSIECLVRNRSS 136
            L Q+++  LV++R  
Sbjct: 121 ELDQFTLHDLVKDREG 136


>gi|229543731|ref|ZP_04432791.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229328151|gb|EEN93826.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 139

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A      P  +  IA++  +SE +L +++ PL  AG V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKRYGMGPTSLKSIAQSQNLSEHYLEQLISPLRNAGFVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   QIT  DV++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLTRKPSQITAGDVIRVLEGPITPVEGIEDEEP--------VKRQLWIRIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DVL   +IE L + R   + 
Sbjct: 113 DVLDSTTIEDLAKYREDTEP 132


>gi|167837169|ref|ZP_02464052.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis MSMB43]
          Length = 180

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGTCEGSKQHDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|56479101|ref|YP_160690.1| iron-sulphur cluster assembly transcription factor IscR
           [Aromatoleum aromaticum EbN1]
 gi|56315144|emb|CAI09789.1| Iron-sulphur cluster assembly transcription factor IscR
           [Aromatoleum aromaticum EbN1]
          Length = 160

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A    + P  ++ IAE   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLASRQTEGPVTLAGIAERQKISLSYLEQLFGKLRRHKLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R   +IT+ DV+ A +E     +C    + +C     C    +        +
Sbjct: 61  PGGGYRLARDMSRITVADVIVAVDEPLDATQC--GGRQNCHDEQRCLTHDLWANLNKRMY 118

Query: 120 DVLTQYSIECLV 131
           + L   ++  LV
Sbjct: 119 EYLDSVTLAALV 130


>gi|110834734|ref|YP_693593.1| rrf2 family protein [Alcanivorax borkumensis SK2]
 gi|110647845|emb|CAL17321.1| rrf2 family protein [Alcanivorax borkumensis SK2]
          Length = 154

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L + G+V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R + QI +  V+ A +ES     C      DC     C    +         
Sbjct: 61  PGGGYQLSRNSGQIDVAAVIAAVDESVDATRC--GGHGDCQEGDICLTHHLWCDLSGQIQ 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L+  ++  LV  R  ++++
Sbjct: 119 DFLSGITLGELVA-RQEVRQV 138


>gi|148260837|ref|YP_001234964.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
           JF-5]
 gi|326404231|ref|YP_004284313.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146402518|gb|ABQ31045.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
           JF-5]
 gi|325051093|dbj|BAJ81431.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 139

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 66/128 (51%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LT  TDYG+R LM  AI  D     S +A    +S   L KIL  LV  G + + RG  G
Sbjct: 5   LTNYTDYGLRALMLLAIEPDRVQSTSALATRLDVSRHHLAKILMDLVAGGYLLSSRGPTG 64

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           GVRL +P  QI I DVV+  E    + ECF +    C L+ +C L   L +A +AF + L
Sbjct: 65  GVRLAKPPGQIRIGDVVRYLERDQAMVECFRADGGQCNLLPACRLRQTLNRAKDAFIETL 124

Query: 123 TQYSIECL 130
              S+  +
Sbjct: 125 NGKSLADM 132


>gi|78223138|ref|YP_384885.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194393|gb|ABB32160.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 135

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR +++ A +       IS+IAEA  + + FL KILQ   K GIV++ RG
Sbjct: 2   MELTRKGEYAIRGIIHLAQLPPGKVALISEIAEATDVPQTFLAKILQSFAKIGIVQSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +IT+ +VV+A E       C       C    +CG+  V R+      
Sbjct: 62  AGGGFMLGRSASRITLREVVEAVEGPILPNRCLIG-SGTCERDSTCGVHPVWRQVQQRVV 120

Query: 120 DVLTQYSIECLVRNR 134
           +VL   +IE L  ++
Sbjct: 121 EVLDGVTIEDLATHK 135


>gi|88812644|ref|ZP_01127891.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
 gi|88790060|gb|EAR21180.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
          Length = 145

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY ++  +  + IS+IAE   IS   L K++  L + G VETVRG+ GG+RL      I 
Sbjct: 1   MYLSLKENELSTISEIAERYAISRNHLMKVVYELGRLGYVETVRGKHGGMRLRHSPASIN 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +VV+ TE    + ECF+S    C L  SC L  VLR+AL AF  VL +YS+  L+  +
Sbjct: 61  LGEVVRRTENDMALVECFSSQNY-CRLTPSCVLHGVLREALQAFLAVLDRYSLADLLEPK 119

Query: 135 SSIKKIF 141
             +  + 
Sbjct: 120 QKLANLL 126


>gi|321314662|ref|YP_004206949.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           BSn5]
 gi|291483405|dbj|BAI84480.1| hypothetical protein BSNT_01615 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020936|gb|ADV95922.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           BSn5]
          Length = 146

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A       + I QIAE   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF ++K  C +   CGL  VL +AL A+ 
Sbjct: 61  RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  LV+N+  I K+ 
Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142


>gi|167563359|ref|ZP_02356275.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia oklahomensis EO147]
 gi|167570529|ref|ZP_02363403.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia oklahomensis C6786]
          Length = 179

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGACEGTKQPDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|269217073|ref|ZP_06160927.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
 gi|269129210|gb|EEZ60295.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
          Length = 168

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H +     + +IA    ISE +L  IL+ LVK G++  +RG
Sbjct: 26  MMISTKGRYALRVMVDLAEHMSCSYTPLKEIARRQEISEKYLESILKVLVKNGLLVGLRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R     T+ ++++ TE       C    +  C  +GSC    + R       
Sbjct: 86  KGGGYRLTRDPSLYTVGEILRLTEGGLAQVPCLDEDESSCDRMGSCRTVEMWRGLDKVIN 145

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   ++  L      
Sbjct: 146 DYLDGITVADLAERIDE 162


>gi|302877884|ref|YP_003846448.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302580673|gb|ADL54684.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 151

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++    P  ++ I+E   IS  +L ++   L ++ +VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMVDLAMNGGRGPVTLASISERQKISLSYLEQLFGKLRRSNLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +I I ++V A +E      C  + K DC     C   ++        +
Sbjct: 61  PGGGYYLAKTATKIKIAEIVVAVDEPLDATYC--AEKGDCRDGQPCLTHNLWMGLNERIY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +++ LV  +S 
Sbjct: 119 SYLDSINLQQLVEGQSK 135


>gi|257440868|ref|ZP_05616623.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
 gi|257196648|gb|EEU94932.1| iron-sulfur cluster assembly transcription factor IscR
           [Faecalibacterium prausnitzii A2-165]
          Length = 143

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H  +    + ++AE   ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHQAERYVPLKEVAERQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C       C  + +C   ++ +   +   
Sbjct: 61  KGGGYRLTRTPDQYTVAEILLLTEGSLAPVSCLVPGAPACERLPNCRTYTMWKGLNDMIA 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D   + ++  L     +
Sbjct: 121 DYFGKITLADLAAPDQA 137


>gi|53719900|ref|YP_108886.1| hypothetical protein BPSL2290 [Burkholderia pseudomallei K96243]
 gi|53723804|ref|YP_103329.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei ATCC 23344]
 gi|67643001|ref|ZP_00441751.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei GB8 horse 4]
 gi|76811684|ref|YP_334120.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1710b]
 gi|121598333|ref|YP_993530.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei SAVP1]
 gi|124385259|ref|YP_001029043.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei NCTC 10229]
 gi|126440264|ref|YP_001059626.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 668]
 gi|126453431|ref|YP_001066909.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1106a]
 gi|134277379|ref|ZP_01764094.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 305]
 gi|167000648|ref|ZP_02266459.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei PRL-20]
 gi|167720354|ref|ZP_02403590.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei DM98]
 gi|167739346|ref|ZP_02412120.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 14]
 gi|167816561|ref|ZP_02448241.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 91]
 gi|167824956|ref|ZP_02456427.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 9]
 gi|167846474|ref|ZP_02471982.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei B7210]
 gi|167895052|ref|ZP_02482454.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 7894]
 gi|167903439|ref|ZP_02490644.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei NCTC 13177]
 gi|167911687|ref|ZP_02498778.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 112]
 gi|167919687|ref|ZP_02506778.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei BCC215]
 gi|217420795|ref|ZP_03452300.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 576]
 gi|237813020|ref|YP_002897471.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei MSHR346]
 gi|242314619|ref|ZP_04813635.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1106b]
 gi|254184365|ref|ZP_04890955.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1655]
 gi|254191399|ref|ZP_04897903.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195785|ref|ZP_04902211.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei S13]
 gi|254200287|ref|ZP_04906653.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei FMH]
 gi|254209363|ref|ZP_04915709.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei JHU]
 gi|254258189|ref|ZP_04949243.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1710a]
 gi|254297029|ref|ZP_04964482.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 406e]
 gi|254357966|ref|ZP_04974239.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei 2002721280]
 gi|262193304|ref|YP_001081037.2| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei NCTC 10247]
 gi|52210314|emb|CAH36293.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52427227|gb|AAU47820.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei ATCC 23344]
 gi|76581137|gb|ABA50612.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1710b]
 gi|121227143|gb|ABM49661.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei SAVP1]
 gi|124293279|gb|ABN02548.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei NCTC 10229]
 gi|126219757|gb|ABN83263.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 668]
 gi|126227073|gb|ABN90613.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1106a]
 gi|134251029|gb|EBA51108.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 305]
 gi|147749883|gb|EDK56957.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei FMH]
 gi|147750136|gb|EDK57207.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei JHU]
 gi|148027093|gb|EDK85114.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei 2002721280]
 gi|157807904|gb|EDO85074.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 406e]
 gi|157939071|gb|EDO94741.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169652530|gb|EDS85223.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei S13]
 gi|184214896|gb|EDU11939.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1655]
 gi|217396207|gb|EEC36224.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 576]
 gi|237504649|gb|ACQ96967.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei MSHR346]
 gi|238524238|gb|EEP87672.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei GB8 horse 4]
 gi|242137858|gb|EES24260.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1106b]
 gi|243063456|gb|EES45642.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei PRL-20]
 gi|254216878|gb|EET06262.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei 1710a]
 gi|261835045|gb|ABO04812.2| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia mallei NCTC 10247]
          Length = 179

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGACEGSKQPDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|241763770|ref|ZP_04761817.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241366989|gb|EER61385.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 178

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV  +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134


>gi|169794588|ref|YP_001712381.1| hypothetical protein ABAYE0402 [Acinetobacter baumannii AYE]
 gi|169147515|emb|CAM85376.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
          Length = 148

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 121 SLDQYTLGEVLQQPKS 136


>gi|83718552|ref|YP_442404.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis E264]
 gi|167581325|ref|ZP_02374199.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis TXDOH]
 gi|167619407|ref|ZP_02388038.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis Bt4]
 gi|257138606|ref|ZP_05586868.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis E264]
 gi|83652377|gb|ABC36440.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia thailandensis E264]
          Length = 179

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQC--GGKGTCEGSKQPDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|303249415|ref|ZP_07335637.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302489175|gb|EFL49145.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 150

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++  Y +R L   A    D P     IAE   I + FL  IL  L + G V+  RG
Sbjct: 1   MPVTQKCQYALRALFELARRKGDGPIPAGGIAERQAIPKRFLEVILHQLRQGGFVDAQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RPA+ +T+ +V++  +      +C       DCPL G C    V ++A  A 
Sbjct: 61  KEGGFYLARPAETVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGGCVFRDVWQEAQAAL 120

Query: 119 FDVLTQYSIECLVRN 133
             V    ++  LV  
Sbjct: 121 EKVYDARNLRDLVEE 135


>gi|15613620|ref|NP_241923.1| hypothetical protein BH1057 [Bacillus halodurans C-125]
 gi|8480599|sp|Q9RC41|NSRR_BACHD RecName: Full=HTH-type transcriptional regulator nsrR
 gi|5822814|dbj|BAA83958.1| YHDE [Bacillus halodurans]
 gi|10173672|dbj|BAB04776.1| BH1057 [Bacillus halodurans C-125]
          Length = 146

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R+L+Y A+   D  + + Q+A    IS   L K+   L K G++ET++G
Sbjct: 1   MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL +  ++I I  VVK TE++  + ECF      C L   C L  VL +AL A+ 
Sbjct: 61  RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL QY+++ L+ N   ++ + 
Sbjct: 121 RVLEQYTLKDLLTNEDELQALL 142


>gi|311067422|ref|YP_003972345.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
           1942]
 gi|310867939|gb|ADP31414.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
           1942]
          Length = 143

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  H +    I QIAE   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLATQHTEDLCNIKQIAETYSISKNHLMKVIYQLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +   CGL  V  +AL A+ 
Sbjct: 61  RGGGIRLGMAPEDINIGEVVRKTEDDFNIVECFDSGKNLCIISPVCGLKHVFNEALLAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL +Y++  LV+N+  I ++ 
Sbjct: 121 SVLDKYTLGDLVKNKQDIMRLL 142


>gi|225573651|ref|ZP_03782406.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038990|gb|EEG49236.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
           10507]
          Length = 134

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRV++  A         ++ IA+   IS  +L  I+  L K G + +  G
Sbjct: 1   MKISTKGRYAIRVMLDLAQQDPKAYTSVASIAQRQEISVKYLEMIISILNKGGYLRSQMG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG +L R A   T+ ++++ TE S     C    +  C    +C    + ++      
Sbjct: 61  KKGGYQLARSAQDYTVGEILRLTEGSLAPVSCLECEEEACGRSMTCLTLPMWKELDRRIG 120

Query: 120 DVLTQYSIECLVRN 133
           + L   ++  L++N
Sbjct: 121 EYLDSVTLADLLKN 134


>gi|254251966|ref|ZP_04945284.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
 gi|124894575|gb|EAY68455.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
          Length = 179

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|78066902|ref|YP_369671.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|115352215|ref|YP_774054.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|172061082|ref|YP_001808734.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|77967647|gb|ABB09027.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
 gi|115282203|gb|ABI87720.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
 gi|171993599|gb|ACB64518.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
 gi|325523676|gb|EGD01947.1| putative transcriptional regulator protein [Burkholderia sp. TJI49]
          Length = 179

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|307823007|ref|ZP_07653237.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
 gi|307735782|gb|EFO06629.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
          Length = 151

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +R+L+Y A   +     I +IAE   IS   L K+   L   G + T RG
Sbjct: 1   MQLTQFTDLSLRLLIYLARLPEPGMATIQEIAEYHQISRNHLVKVANSLANQGFIMTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG++L RPA  I + +VV+ TE +  + ECF +    C L+ +C L + L +A  AF 
Sbjct: 61  KGGGIQLARPAYTIGVGEVVRRTELNMNLVECFDAPTNQCRLIRNCFLKATLYEAQRAFM 120

Query: 120 DVLTQYSIEC 129
            VL +Y++  
Sbjct: 121 TVLDKYTLAD 130


>gi|154685398|ref|YP_001420559.1| YhdE [Bacillus amyloliquefaciens FZB42]
 gi|154351249|gb|ABS73328.1| YhdE [Bacillus amyloliquefaciens FZB42]
          Length = 144

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A  H+D  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  LV+N+  I ++  +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144


>gi|157828690|ref|YP_001494932.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933410|ref|YP_001650199.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|157801171|gb|ABV76424.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908497|gb|ABY72793.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
          Length = 142

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 64/129 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R L+Y A   +    + +I+E   IS   L K++  L + G + + +G+
Sbjct: 1   MQLTSFTDYGLRSLIYLASTPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            G ++L      + + D+++  E +  + ECF  +   C +  S      +++A  AF  
Sbjct: 61  GGRIKLAFSPSSMNLGDIIEKFEPNMDIVECFNKNTNSCRITNSYQFKHFIKEASEAFIK 120

Query: 121 VLTQYSIEC 129
            L  Y++E 
Sbjct: 121 TLNNYTLED 129


>gi|15615687|ref|NP_243991.1| hypothetical protein BH3125 [Bacillus halodurans C-125]
 gi|10175747|dbj|BAB06844.1| BH3125 [Bacillus halodurans C-125]
          Length = 142

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + +Y +R L+  A   +    + ++++   +   +L K+L  L     + + RG+
Sbjct: 1   MKVSSKGEYCLRALIILAKQPERRFTVHELSKHTLVPPPYLEKLLSQLRVLSYITSKRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG +L R A  I++ +V++  E       C +      C L   C L  +     +   
Sbjct: 61  GGGYQLSRDARDISMGEVIRQLEGPLAPMSCVSVTSYQSCELEQGCLLKPLWGLVRDTVA 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +VL Q ++  L+ N+   +K+
Sbjct: 121 NVLDQTTLADLIENKLGQRKV 141


>gi|50086222|ref|YP_047732.1| hypothetical protein ACIAD3227 [Acinetobacter sp. ADP1]
 gi|49532198|emb|CAG69910.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 145

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY +  ++ P  I+ IA    +S+  L KI+  + K G + T RG+
Sbjct: 4   MQLNKFTDYALRILMYVSRPSETPYTIADIANDLRVSQNHLVKIVHFMGKQGWIITTRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A  + + D+V++ +    + EC   H   C L   CGL  +L +AL  F+ 
Sbjct: 64  GGGLKLNPKALDLKLGDIVRSLQGDHQIVEC---HTPPCVLRSHCGLKGILDQALEQFYQ 120

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L QY ++ ++R   +   I
Sbjct: 121 SLDQYQLKDVLRAPPTYSPI 140


>gi|167756512|ref|ZP_02428639.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
 gi|167702687|gb|EDS17266.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
          Length = 144

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRV++  A+H+D     +  IA+   ++  +L +I+  L KAG ++++RG
Sbjct: 1   MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  ++  I D+++ TE       C      +C     C      +       
Sbjct: 61  NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 120

Query: 120 DVLTQYSIECLVRN 133
           D +   +I+ L+ +
Sbjct: 121 DYVESVTIQDLIDH 134


>gi|330817662|ref|YP_004361367.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370055|gb|AEA61411.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 179

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAADVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|237733110|ref|ZP_04563591.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383792|gb|EEO33883.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 147

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y IRV++  A+H+D     +  IA+   ++  +L +I+  L KAG ++++RG
Sbjct: 4   MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  ++  I D+++ TE       C      +C     C      +       
Sbjct: 64  NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 123

Query: 120 DVLTQYSIECLVRN 133
           D +   +I+ L+ +
Sbjct: 124 DYVESVTIQDLIDH 137


>gi|83593363|ref|YP_427115.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576277|gb|ABC22828.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 154

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A H+   P  ++ IA+   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  + I D++ A +E      C       C    G C    +  +  N  
Sbjct: 61  PGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCMTHDLWEELANQI 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L+  S+E + + R
Sbjct: 121 YLYLSSVSLEDVTQRR 136


>gi|59801064|ref|YP_207776.1| hypothetical protein NGO0637 [Neisseria gonorrhoeae FA 1090]
 gi|194098839|ref|YP_002001902.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999125|ref|ZP_04719049.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae 35/02]
 gi|240013967|ref|ZP_04720880.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae DGI18]
 gi|240016408|ref|ZP_04722948.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae FA6140]
 gi|240080528|ref|ZP_04725071.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae FA19]
 gi|240113104|ref|ZP_04727594.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae MS11]
 gi|240115860|ref|ZP_04729922.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID18]
 gi|240118158|ref|ZP_04732220.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID1]
 gi|240121535|ref|ZP_04734497.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID24-1]
 gi|240123706|ref|ZP_04736662.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae PID332]
 gi|240125897|ref|ZP_04738783.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128409|ref|ZP_04741070.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae SK-93-1035]
 gi|254493902|ref|ZP_05107073.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260440325|ref|ZP_05794141.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae DGI2]
 gi|268594960|ref|ZP_06129127.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268596661|ref|ZP_06130828.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268599189|ref|ZP_06133356.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601536|ref|ZP_06135703.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603874|ref|ZP_06138041.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682338|ref|ZP_06149200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684495|ref|ZP_06151357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686806|ref|ZP_06153668.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043619|ref|ZP_06569335.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|293398928|ref|ZP_06643093.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           gonorrhoeae F62]
 gi|59717959|gb|AAW89364.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934129|gb|ACF29953.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
           gonorrhoeae NCCP11945]
 gi|226512942|gb|EEH62287.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548349|gb|EEZ43767.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
 gi|268550449|gb|EEZ45468.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
 gi|268583320|gb|EEZ47996.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585667|gb|EEZ50343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588005|gb|EEZ52681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622622|gb|EEZ55022.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624779|gb|EEZ57179.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627090|gb|EEZ59490.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012082|gb|EFE04071.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
 gi|291610342|gb|EFF39452.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           gonorrhoeae F62]
 gi|317164418|gb|ADV07959.1| hypothetical protein NGTW08_0991 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 148

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  QI I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135


>gi|107028693|ref|YP_625788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105897857|gb|ABF80815.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia AU 1054]
          Length = 179

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|116690148|ref|YP_835771.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|161524318|ref|YP_001579330.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|170701998|ref|ZP_02892918.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|170733480|ref|YP_001765427.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|189350926|ref|YP_001946554.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198432|ref|ZP_03571478.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2M]
 gi|221208891|ref|ZP_03581888.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2]
 gi|221214778|ref|ZP_03587747.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD1]
 gi|254247783|ref|ZP_04941104.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
 gi|116648237|gb|ABK08878.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
 gi|124872559|gb|EAY64275.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
 gi|160341747|gb|ABX14833.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans ATCC 17616]
 gi|169816722|gb|ACA91305.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
 gi|170133088|gb|EDT01496.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|189334948|dbj|BAG44018.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165317|gb|EED97794.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD1]
 gi|221171174|gb|EEE03624.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2]
 gi|221182364|gb|EEE14765.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia multivorans CGD2M]
          Length = 179

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|296332358|ref|ZP_06874819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673638|ref|YP_003865310.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150276|gb|EFG91164.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411882|gb|ADM37001.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 146

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A       + I QIAE   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF  +K  C +   CGL  VL +AL A+ 
Sbjct: 61  RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDVNKNLCVISPVCGLKHVLNEALMAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
            VL  Y++  LV+N+  I K+ 
Sbjct: 121 AVLDNYTLRDLVKNKEDIMKLL 142


>gi|315924766|ref|ZP_07920983.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621665|gb|EFV01629.1| iron-sulfur cluster assembly transcription regulator IscR
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 139

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   A H    P  I +IA+    S+ +L ++   L KAG++ ++RG
Sbjct: 1   MKLSTKGQYGVLAMCELASHYGKGPMSIKEIADKQHFSDAYLEQLFSKLKKAGLIRSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I + +V+ A E       C  +  +DC    SC   ++     N+  
Sbjct: 61  AHGGYQLTREPSAIVVGEVIDAVEGPIEFCGC-DAEAVDCNRAQSCPTVNLWMDVQNSIR 119

Query: 120 DVLTQYSIECLV 131
            V+   S++ L+
Sbjct: 120 SVIDHRSLQDLI 131


>gi|261380293|ref|ZP_05984866.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           subflava NJ9703]
 gi|284796806|gb|EFC52153.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           subflava NJ9703]
          Length = 148

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA+QI I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  +++ ++  ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134


>gi|317471927|ref|ZP_07931261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|316900593|gb|EFV22573.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 145

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A HN      +  +++   IS  +L +I++ L   G ++++RG
Sbjct: 1   MKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +   + TI DV++ TE S     C       C     C    +         
Sbjct: 61  PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   +I+ ++ +R+++K
Sbjct: 121 DYLGSVTIQDIL-DRAALK 138


>gi|325272149|ref|ZP_08138580.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|171362773|dbj|BAG15850.1| probable transcriptional regulator [Pseudomonas putida]
 gi|324102712|gb|EGC00128.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 163

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVMRRE 134


>gi|300114135|ref|YP_003760710.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540072|gb|ADJ28389.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 166

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L K G+V + RG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A +I+I+DV+ A +E+     C      +C     C    +        +
Sbjct: 61  PGGGYRLSREAGKISIIDVITAVDENMDATRCGGLK--NCQENQRCLTHELWEDLSRQIY 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++  L++ R  I+++
Sbjct: 119 KFLAHITLGELIQ-RDDIQEV 138


>gi|322418655|ref|YP_004197878.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320125042|gb|ADW12602.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 136

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A         IS+IA A  + + FL KI Q   K G+V + RG
Sbjct: 2   MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA  IT+ +VV+A E       C       C   G C +  + ++      
Sbjct: 62  TGGGFVLARPASAITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHLIWKRVQTEVV 119

Query: 120 DVLTQYSIECLVRN 133
           D+L   +I+ L RN
Sbjct: 120 DILDSVTIDTLARN 133


>gi|86148482|ref|ZP_01066771.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
 gi|218708942|ref|YP_002416563.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
 gi|85833722|gb|EAQ51891.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
 gi|218321961|emb|CAV17962.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
          Length = 147

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T+ TDY +RVL+Y AI+N   + I  IA +  IS+  L KI+Q L   G +   RG+
Sbjct: 1   MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L     QI I  +V+  E+   + ECF      C +  +C L ++  +A   F+ 
Sbjct: 61  NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGEDN-SCVITPNCQLKTIFAEAQECFYK 119

Query: 121 VLTQYSIECLVRNRSSIK 138
            L  YS++ L+    S K
Sbjct: 120 CLDAYSLQDLLGEGHSYK 137


>gi|261364552|ref|ZP_05977435.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           mucosa ATCC 25996]
 gi|288567120|gb|EFC88680.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           mucosa ATCC 25996]
          Length = 148

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  QI I  ++ A E+     +C  S K +C     C    +         
Sbjct: 61  PGGGYILAAPPAQINIAQIISAAEDKLDATQC--SSKANCYHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L+  +++ ++  ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135


>gi|206560561|ref|YP_002231326.1| putative transcriptional regulator protein [Burkholderia
           cenocepacia J2315]
 gi|198036603|emb|CAR52500.1| putative transcriptional regulator protein [Burkholderia
           cenocepacia J2315]
          Length = 179

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|94309969|ref|YP_583179.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353821|gb|ABF07910.1| transcriptional regulator of iron sulfur clusterassembly
           [Cupriavidus metallidurans CH34]
          Length = 184

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A+ +T+ D++ A +E     +C      +     G C    +        
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  + + + 
Sbjct: 121 VEYLDSVSLKNLVDQQRARQP 141


>gi|260549846|ref|ZP_05824062.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407096|gb|EEX00573.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 148

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4   MQLNKFTDYALRILMYIARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A  + +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 64  GGGIRLNPKALDLKLGAIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120

Query: 121 VLTQYSIECLVRNRSS 136
            L Q+++  +++   S
Sbjct: 121 SLDQHTLGEVLQQPKS 136


>gi|320159424|ref|YP_004172648.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
 gi|319993277|dbj|BAJ62048.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
          Length = 136

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++ DY +R ++Y A +  +     SQIAE   I   FL KI+  L  AG++ T RG
Sbjct: 1   MQITRQADYALRAMVYLARLSPNQRASTSQIAEEQHIPPSFLAKIISQLSIAGLIHTSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGGV L RP ++IT+LDVV+A +    + EC +   + C     C +  +         
Sbjct: 61  ARGGVTLARPPEEITVLDVVEAIDGPIALNECTSPSGV-CMFGEDCPMKPIWCDTQKELI 119

Query: 120 DVLTQYSIEC 129
           D L + +   
Sbjct: 120 DRLRRTTFAQ 129


>gi|71278574|ref|YP_267874.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
 gi|71144314|gb|AAZ24787.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
          Length = 168

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++   IH    P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVTIHAVSGPVSLADISERQGISLSYLEQLFSRLRKEGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R + QI + DV+ A  ES    +C  S K +C     C   S+         
Sbjct: 61  PGGGYRLGRCSAQIAVADVIYAVNESVDATKC--SGKGNCQDGEQCLTHSLWEGLSQRIE 118

Query: 120 DVLTQYSIECLVRN 133
           + L   ++  LV  
Sbjct: 119 EFLKNITLSELVAK 132


>gi|87118174|ref|ZP_01074073.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
 gi|86165808|gb|EAQ67074.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
          Length = 147

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R LMY  +I  +  + + ++A     S+    K++  L K G V+++RG
Sbjct: 1   MRLTAFTDFGLRTLMYLTSIPTEQLSSVPEVARVYGASQNHFVKVIGQLTKLGYVQSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL + A+ I I  V++  E       C    K  C +   C L   L  A+ AF 
Sbjct: 61  KNGGIRLAKKAEDINIGKVIRELENHLDAVNC---TKPVCQIASCCELKHALALAMEAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             + QYS+  +V N+  +  ++ +
Sbjct: 118 STMEQYSLADIVHNKPELIPLWQS 141


>gi|293604765|ref|ZP_06687165.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
           43553]
 gi|292816934|gb|EFF76015.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
           43553]
          Length = 145

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLM      D P    I +IA    +S   L K++  + + G + TVR
Sbjct: 1   MQLTRFTDFGLRVLMCLTQCRDRPSPVTIPEIAGRFEVSRNHLVKVVHFMSQRGWISTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A    + D+++  E+   + +C   H+  C L G+C L  VL + LNAF
Sbjct: 61  GKGGGLRLARDACAYRVGDLIRELEQQGPLIDC---HEPPCALDGACRLAGVLAQTLNAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D L  Y++  LVR+ ++
Sbjct: 118 YDALNGYTLADLVRDPTA 135


>gi|293610818|ref|ZP_06693118.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827162|gb|EFF85527.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 145

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 1   MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F+ 
Sbjct: 61  GGGIRLNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117

Query: 121 VLTQYSIECLVRNRSS 136
            L QY++  +++   S
Sbjct: 118 SLDQYTLGEVLQQSKS 133


>gi|121999002|ref|YP_001003789.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590407|gb|ABM62987.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 151

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y     +    + +IA A  IS+  L K++  L + G ++T +GR
Sbjct: 1   MELTYYTDYALRVLLYAGAQGERRVPMREIARAYGISQDHLRKVVHRLARHGYLQTTQGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL      I + DVV+  E+S  +  C    +  CPL G C L   L  A + F  
Sbjct: 61  SGGLRLGCAPGAIRVGDVVRLMEDSLELIHC---DRGPCPLCGHCSLKRALNGARDQFIQ 117

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L   ++E L+ +  + +++
Sbjct: 118 HLDGVTLEELLADPGTAQQL 137


>gi|239815132|ref|YP_002944042.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
 gi|319794405|ref|YP_004156045.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
           EPS]
 gi|239801709|gb|ACS18776.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
 gi|315596868|gb|ADU37934.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           EPS]
          Length = 178

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYSLGRKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|296114961|ref|ZP_06833606.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295978479|gb|EFG85212.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 164

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y A+  +    I ++A+A  +SE  + K++  L +AG++ TVRGR
Sbjct: 1   MRLTLHTDYALRVLLYVALRPETRVSIREVAQANRVSETHMVKVVHKLGRAGLIRTVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118
            GG+ L + A+ I I  VV+ TEE   +  C        DC L G C    VL  AL+AF
Sbjct: 61  GGGIELGQAAEDIRIGAVVRLTEEERQLVSCMRPKAEAEDCVLSGFCQFYFVLGTALDAF 120

Query: 119 FDVLTQYSIECLVR---NRSSIKKIF 141
            +VL ++++  +++       ++++F
Sbjct: 121 MEVLDRWTLADILKMSARDDMMRRLF 146


>gi|317407279|gb|EFV87255.1| hypothetical protein HMPREF0005_05535 [Achromobacter xylosoxidans
           C54]
          Length = 145

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D P    I +IA    +S   L K++  + + G V T R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIAARFDLSRNHLVKVVHFMSQRGWVSTAR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ L RPA    + D+V+  E+   + +C    +  C L G+C L+ VL + L AF
Sbjct: 61  GKGGGLALARPAADYRLGDLVRELEQQGPLIDC---REPPCALDGACRLSGVLAQTLQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           ++ L  YS+  LVR+ ++
Sbjct: 118 YEALNGYSLADLVRDPTA 135


>gi|311105547|ref|YP_003978400.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
 gi|310760236|gb|ADP15685.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
          Length = 145

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D P    I +IA+   +S   L K+   + + G V T R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIADRFSVSRNHLVKVAHFMAQQGWVSTSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL R A    + D+++  E+   + +C    +  C L GSC L+ VL + L AF
Sbjct: 61  GKGGGLRLSRSAGDYRLGDLIRQLEQQGPLIDC---REPPCALDGSCRLSGVLAQTLQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           ++ L  Y++  LVR+ ++
Sbjct: 118 YEALNGYTLADLVRDPTA 135


>gi|238028021|ref|YP_002912252.1| putative transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877215|gb|ACR29548.1| Predicted transcriptional regulator [Burkholderia glumae BGR1]
          Length = 178

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L R A  +T+ D++ A +E     +C    K  C       G C    +     
Sbjct: 61  PGGGYNLARRAGDVTVADIIIAVDEPLDATQC--GGKGTCEGTKQPDGHCMTHELWSTLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
               + L   S++ LV  + +
Sbjct: 119 QKMVEYLDSVSLQDLVDQQRA 139


>gi|114767192|ref|ZP_01446069.1| Transcriptional regulator [Pelagibaca bermudensis HTCC2601]
 gi|114540662|gb|EAU43732.1| Transcriptional regulator [Roseovarius sp. HTCC2601]
          Length = 188

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 78/141 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+   R+LM CA++ D   R ++IA+ C  S      ++Q L   G +E  RGR
Sbjct: 34  MRLTTRTNLAARILMACAVNPDRRLRTAEIADLCNCSTNHAAHVVQRLHAEGYLEAQRGR 93

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   Q++I  V +  E     AECF +    CPLVG+C L S +R+AL AF+ 
Sbjct: 94  AGGIRLARAVPQVSIGAVFRLFESEIPFAECFDADTNSCPLVGTCRLRSYIRRALEAFYH 153

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L   +++ LVR    + ++ 
Sbjct: 154 ELDLVTLDDLVRGNCGLTELL 174


>gi|319638128|ref|ZP_07992891.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
 gi|317400401|gb|EFV81059.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
          Length = 148

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA+QI I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  +++ ++  ++
Sbjct: 119 DYLSGVTLQSIIEQKN 134


>gi|291532767|emb|CBL05880.1| transcriptional regulator, BadM/Rrf2 family [Megamonas hypermegale
           ART12/1]
          Length = 156

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++   ++N   P  +  IA    IS  ++ +I+  L+KA +V++VRG
Sbjct: 1   MKVSTKGRYALRTMIDLTVNNTGNPIPLKDIATRQNISLKYMEQIISLLIKAKLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + + Q T  D+++A E       C      +C     C +            
Sbjct: 61  NNGGYLLAKSSMQYTAGDILRAAEGDMAPIACIEKDHCNCNRADYCSVLPFWLGLNKVIN 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  L R    
Sbjct: 121 GYLDSVTLSELARQAKE 137


>gi|91788050|ref|YP_549002.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697275|gb|ABE44104.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 178

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  N  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQNSGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
             GG  L R A +IT+ D++ + +E     +C    K +C    G C    +     +  
Sbjct: 61  PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGGRCMTHELWASLNSRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|332528393|ref|ZP_08404387.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042156|gb|EGI78488.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
           gracilis ATCC 19624]
          Length = 178

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  ++ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  +T+ D++ + +E     +C           G C    +         
Sbjct: 61  PGGGYTLARKAADVTVADIILSVDEPIDATQCGGKENCQGGDGGRCMTHELWSALNTRMV 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV  +
Sbjct: 121 EFLDSVTLQKLVDEQ 135


>gi|313894415|ref|ZP_07827980.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441239|gb|EFR59666.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 138

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L   A +  +    I +IAE    S+ +L  I+  L  AG+V++ RG
Sbjct: 1   MKISTKGRYALRILADIAEYGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   +  + +++ A E+S  +  C       CP+   C    + +   + F 
Sbjct: 61  KYGGYRLVKLPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120

Query: 120 DVLTQYSIECLVRNR 134
            V+ + S++ ++ ++
Sbjct: 121 HVMERVSLQDVMDHK 135


>gi|145300994|ref|YP_001143835.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853766|gb|ABO92087.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 150

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           +VL +Y++   VR+ + +  +  
Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140


>gi|117619511|ref|YP_854778.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560918|gb|ABK37866.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 150

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TDY +R L + A+   D  + I+++A+   IS   + KI+  L   G +ETVRG
Sbjct: 1   MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + DVV   E      +C    + +C L G C +  +LR+A+NAF 
Sbjct: 61  KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDC---KRENCRLSGGCRIQGILRRAMNAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           +VL +Y++   VR+ + +  +  
Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140


>gi|283852223|ref|ZP_06369496.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283572449|gb|EFC20436.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 145

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG+R+L+  A+H  + P RI  IA+   IS  +L ++++ L KAG + + RG
Sbjct: 1   MQLTTRSRYGLRMLIDIALHGSERPVRIQDIAKRRNISVKYLEQLIRALKKAGFIHSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    + I + DVV+A E    + EC  +    C +   C    +  +A  + F
Sbjct: 61  PKGGHILAMAPEDIRVGDVVRALEVRPELTECVGNPDA-CLIASDCVTRQIWARATASLF 119

Query: 120 DVLTQYSIECLV 131
             L    +  L+
Sbjct: 120 KELDAIHVSDLL 131


>gi|104780228|ref|YP_606726.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           entomophila L48]
 gi|95109215|emb|CAK13912.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           entomophila L48]
          Length = 163

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  + I +  V+ A  ES     C      DC    +C    +         
Sbjct: 61  PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVMRRE 134


>gi|323698961|ref|ZP_08110873.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           ND132]
 gi|323458893|gb|EGB14758.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans ND132]
          Length = 147

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT R+ YG R+L+  A+H  N  P      A+   +S  +L K+++ L +AG V+  R
Sbjct: 1   MKLTTRSRYGTRLLLDIALHSENGSPVPSKDTADREGLSLKYLEKLIKMLKQAGYVKGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R  + I+I +V +  +    V  C       CP    C   S+   A  A 
Sbjct: 61  GPNGGNVLVRAPEDISIGEVARILDGEEQVLGC-EGDPSTCPRAAVCLKRSIWDDASLAM 119

Query: 119 FDVLTQYSIECLVRN 133
           + +L  YS+  L+++
Sbjct: 120 YRMLDSYSLADLMKD 134


>gi|17545737|ref|NP_519139.1| hypothetical protein RSc1018 [Ralstonia solanacearum GMI1000]
 gi|17428031|emb|CAD14720.1| putative of unknown function upf0074; transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|299066983|emb|CBJ38178.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CMR15]
          Length = 193

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116
             GG  L R AD +T+ D++ A +E     +C    K +C      G C    +      
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQ 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + L   S++ LV  +   + 
Sbjct: 119 KMVEYLDSVSLQNLVDQQRERQP 141


>gi|302335472|ref|YP_003800679.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
 gi|301319312|gb|ADK67799.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
          Length = 141

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            + +  Y +RV+   A H  +   +  +++   IS  +L +++  + KAG VE++RG+ G
Sbjct: 5   FSTKGRYALRVMGDLATHEGW-VSLGDVSKRQGISRKYLEQVVSRMHKAGYVESLRGKGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
           G RL R  +  T+ ++++A E S     C      + CP   SC   ++ R         
Sbjct: 64  GYRLTRAPEDYTLGEILRAAEGSLAPVACLDCTNDEICPQADSCPTVTIWRDLGRVTAGF 123

Query: 122 LTQYSIECLVRN 133
           L   ++  +V +
Sbjct: 124 LDSRTLADIVGD 135


>gi|90417479|ref|ZP_01225402.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
 gi|90330720|gb|EAS45999.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
          Length = 158

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++   IH +D P  +S+I++   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLTIHCDDKPVSLSEISQRQSISLSYLEQLFSKLRQAELVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R ++ + I +++ A  ES     C    K DC     C   S+  +  +   
Sbjct: 61  PGGGYRLGRSSETVFIAEIIDAVNESVDSTNC--QGKGDCQGGEICLTHSLWDQLSHEIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L   S+  LV  R 
Sbjct: 119 NFLNAISLADLVARRD 134


>gi|241760101|ref|ZP_04758199.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           flavescens SK114]
 gi|241319555|gb|EER55985.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           flavescens SK114]
          Length = 148

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA+QI I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  +++ ++  ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134


>gi|221066571|ref|ZP_03542676.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|264678869|ref|YP_003278776.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Comamonas testosteroni CNB-2]
 gi|299532420|ref|ZP_07045812.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
 gi|220711594|gb|EED66962.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           KF-1]
 gi|262209382|gb|ACY33480.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           CNB-2]
 gi|298719658|gb|EFI60623.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
           testosteroni S44]
          Length = 178

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKATDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV  +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134


>gi|113867177|ref|YP_725666.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
           [Ralstonia eutropha H16]
 gi|113525953|emb|CAJ92298.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
           [Ralstonia eutropha H16]
          Length = 184

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A+ +T+ D++ A +E     +C      +     G C    +        
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  +   + 
Sbjct: 121 VEYLDSVSLKNLVDQQRERQP 141


>gi|70732290|ref|YP_262046.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens Pf-5]
 gi|68346589|gb|AAY94195.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
           fluorescens Pf-5]
          Length = 163

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I +  V+ A  ES    +C      DC    +C    +         
Sbjct: 61  PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 118

Query: 120 DVLTQYSIECLVRNRS 135
           + L+  S+  LV  R 
Sbjct: 119 EFLSGISLADLVTRRE 134


>gi|194289262|ref|YP_002005169.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193223097|emb|CAQ69102.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
          Length = 183

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A+ +T+ D++ A +E     +C      +     G C    +        
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  +   + 
Sbjct: 121 VEYLDSVSLKNLVDQQRERQP 141


>gi|171320031|ref|ZP_02909102.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171094724|gb|EDT39767.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 179

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|160899434|ref|YP_001565016.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
           SPH-1]
 gi|160365018|gb|ABX36631.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
           SPH-1]
          Length = 178

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A  IT+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV  +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134


>gi|260433137|ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416965|gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 142

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/129 (35%), Positives = 68/129 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   +     +++AE   +S   L K++  L +AG +ET RG 
Sbjct: 1   MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP +QI + DVV   E    + ECFA+    C L  SC L   L++A   F +
Sbjct: 61  GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120

Query: 121 VLTQYSIEC 129
            L + ++  
Sbjct: 121 DLNRSTLAD 129


>gi|114565174|ref|YP_752688.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336467|gb|ABI73849.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           frigidimarina NCIMB 400]
          Length = 151

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+GIR+LMY A+ ++  N  RI+++     +S   + KI+  L K G ++TVR
Sbjct: 1   MQLTRYTDFGIRILMYLAVQSERENLFRIAEVTSVFDLSSNHVAKIIHQLGKMGYLQTVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG RL + AD++ I  +V+  E S    +C       C     C L  VL +A+ A+
Sbjct: 61  GKSGGFRLAKAADEVLIGQLVRDLEHSLSPIDC---ESPYCRFTPICRLKGVLGQAVTAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL QY++  +V N+S I
Sbjct: 118 LAVLDQYTLADIVSNKSDI 136


>gi|226946079|ref|YP_002801152.1| Iron-sulfur cluster assembly transcription factor IscR [Azotobacter
           vinelandii DJ]
 gi|6137265|sp|O69219|YOR2_AZOVI RecName: Full=Putative HTH-type transcriptional regulator ORF2
 gi|3046321|gb|AAC24480.1| unknown [Azotobacter vinelandii]
 gi|226721006|gb|ACO80177.1| Iron-sulphur cluster assembly transcription factor IscR
           [Azotobacter vinelandii DJ]
          Length = 164

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRNSLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    I + +V+ A  ES  V  C       C     C    +     +   
Sbjct: 61  PGGGYQLSRSMAAIQVAEVIDAVNESVDVTRCQGDRG--CRSGEVCLTHYLWCDLSHQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L+  S+  LV  RS ++ +
Sbjct: 119 EFLSGISLADLVA-RSDVQDL 138


>gi|317491645|ref|ZP_07950081.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921192|gb|EFV42515.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 144

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD+G+R LMY A +       + +IA    IS   + K++  LV  G +  VRG
Sbjct: 1   MKLTTYTDFGLRALMYLASMPYGQRTSVGEIAGHYDISRNHMVKVVAQLVGLGYIHAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +PA  I I  V++A E +    +C   H   C L+  C L + L+  + AF 
Sbjct: 61  KGGGIELGKPAADINIGQVIRALESNLNGIDC---HSPGCKLIKICQLQAALKVGMEAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             +  Y++  LV NR  I  I  
Sbjct: 118 TAMENYTLADLVSNRGEIIAILG 140


>gi|206900600|ref|YP_002250996.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
 gi|206739703|gb|ACI18761.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
          Length = 138

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ R+ YG+R L+Y A +   D P  + +IAEA  I   +L +I++ L +   V    
Sbjct: 1   MKLSTRSRYGLRALIYIAKNQKEDSPVSVRKIAEAEEIPLRYLERIMRILSQKNYVRAEV 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + I ILDVV+A E    + +C   H + C  + SC    +  +   + 
Sbjct: 61  GAEGGYYLNISPENIRILDVVEALEGRINLVDCL--HGVKCKRMPSCPTRPLWIEMTKSL 118

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            + L +Y++   ++    IK
Sbjct: 119 KETLAKYTLADFLKEEEKIK 138


>gi|92114964|ref|YP_574892.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798054|gb|ABE60193.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
           salexigens DSM 3043]
          Length = 178

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H D  P  ++ I++   IS  +L ++   L +A +V++VRG
Sbjct: 18  MRLTTKGRYAVTAMLDLALHADAGPISLADISKRQAISLSYLEQLFARLKRAALVKSVRG 77

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A+ I++  V+ A +ES     C      DC    +C    +     +   
Sbjct: 78  PGGGYLLAHGANAISVASVIGAVDESVDATRCQGL--SDCQQGDTCLTHHLWCDLSDKIH 135

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  LV  + 
Sbjct: 136 GFLDAITLAELVERQE 151


>gi|329115699|ref|ZP_08244418.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
 gi|326694969|gb|EGE46691.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
          Length = 155

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R L++     D  + I +IAE   ISE  + K++  L K G +ET+RGR
Sbjct: 6   MKLNLQTDYALRALIFLGSRTDRLSSIREIAETYRISETHMVKVIHRLGKGGFIETLRGR 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG+RL R A+ I I  VV   EE   + +C +      +  C L+ SC L  VL + + 
Sbjct: 66  NGGIRLGRLAETIRIGAVVSYMEEDMSLLDCLSHKTCEREGTCILMPSCRLRGVLSETMQ 125

Query: 117 AFFDVLTQYSIECLV 131
           A   VL +Y++  ++
Sbjct: 126 AMMSVLDRYTLADMI 140


>gi|134296308|ref|YP_001120043.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134139465|gb|ABO55208.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 179

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R A  +T+ D++ A +E     +C      D      G C    +       
Sbjct: 61  PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACDGSKQPDGHCMTHELWSTLNQK 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   S++ LV  + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRA 139


>gi|222055720|ref|YP_002538082.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221565009|gb|ACM20981.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 137

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A  +      IS+IA A  + + FL KI Q   K GI+ + RG
Sbjct: 2   MELTRKGEYAIRGIIYLAQQSPGKVSLISEIALATDVPQTFLAKIFQSFAKLGIINSSRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA  IT+  VV+A E       C       C   G C + +V R   +   
Sbjct: 62  TGGGFVLGRPASSITLRQVVEAVEGPIIPNRCLMDSGA-CDRGGYCNVHNVWRTVQSNVI 120

Query: 120 DVLTQYSIECLVRNRSS 136
            +L   +IE L + R+S
Sbjct: 121 GILDSVTIEELAKPRAS 137


>gi|297539149|ref|YP_003674918.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
 gi|297258496|gb|ADI30341.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
          Length = 176

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 18/156 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND----------------YPNRISQIAEACCISELFLFKI 44
           M LT +  + +  ++  A+H                   P  ++ I+E   IS  +L ++
Sbjct: 1   MKLTTKGRFAVTAMLDLALHEALANSESKLAGSELNEIKPVTLAGISERQSISLSYLEQL 60

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
              L + G+V +VRG  GG +L +    I++ +++ A +E      C      +C   G 
Sbjct: 61  FSRLRRQGLVNSVRGPGGGYKLAKNYADISVAEIINAVDEQIDATHCGGQE--NCKDEGR 118

Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
           C    +         D L   S+  +V +++S KK+
Sbjct: 119 CMTHDLWSTLNTKILDYLAGVSLADMVASQTSDKKV 154


>gi|71907577|ref|YP_285164.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71847198|gb|AAZ46694.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
           aromatica RCB]
          Length = 167

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  +M  A+  D  P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMMDLALRGDDGPVALASISERQKISLSYLEQLFGKLRRYKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  + RP + + + D+++A +E     +C      +C     C    +        F
Sbjct: 61  PGGGYCIARPLELVRVADIIRAVDEQLDATQCGGRE--NCHDEHRCMTHDLWTTLNVKMF 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L+  ++  LV      +
Sbjct: 119 DYLSSVTLADLVERERQKR 137


>gi|297624030|ref|YP_003705464.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297165210|gb|ADI14921.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 149

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R  YG+R L+  A+  +    +  ++E   IS+ +L +I+  L +AGIVE+VRG 
Sbjct: 1   MWISTRAQYGMRALVEIALSGET-TSLKVVSERQGISQHYLEQIVAVLRRAGIVESVRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R+ RP  ++T L+VV+  E S     C       C   G+C   S+  +   A  +
Sbjct: 60  YGGYRMARPMHEVTALEVVELMEGSLAPVACIEDEAC-CEYTGNCSTQSLWERVDRAVRE 118

Query: 121 VLTQYSIECLVRNRSSIK 138
           VL   +I  LV  R  ++
Sbjct: 119 VLGSTTIGDLVAERQLLQ 136


>gi|223928089|gb|ACN23804.1| iron-sulfur cluster regulator [Clostridium sp. enrichment culture
           clone 7-14]
          Length = 153

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H  +    +  +A+   ISE +L  I++ LVKA ++  +RG
Sbjct: 11  MLISTKGRYALRVMVDLAEHRTEGYIPLKAVAQRQDISEKYLESIIKLLVKAKLLNGLRG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +  +  T+  +++ TEES     C       CP +  C   S+ +       
Sbjct: 71  KGGGYQLTKAPELYTVGSILRLTEESLAPVSCLEPGAASCPRMAECRTLSLWQGLDRVIS 130

Query: 120 DVLTQYSIECLVRN 133
           D L   ++  LV++
Sbjct: 131 DYLDNITVADLVKS 144


>gi|205374225|ref|ZP_03227024.1| transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 139

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA    +SE +L +++ PL  AG+V ++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKRHGEGPTSLKTIATTHELSEHYLEQLIAPLRNAGLVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  D+++  E      E     +             + +K  +A  
Sbjct: 61  AYGGYVLAMEPKEITAGDIIRVLEGPISPVEGIEDEEP--------AKRELWKKIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           DVL   +IE L 
Sbjct: 113 DVLDNTTIEDLA 124


>gi|113460426|ref|YP_718488.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
           129PT]
 gi|112822469|gb|ABI24558.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
           129PT]
          Length = 135

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    +QI+I  V+ A  E+  V +C  +   DC     C   S+  +      
Sbjct: 61  PGGGYQLGLSTEQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L + +I  LV  ++ 
Sbjct: 119 NFLNEITIAELVAKQAK 135


>gi|225076501|ref|ZP_03719700.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
           NRL30031/H210]
 gi|224952180|gb|EEG33389.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
           NRL30031/H210]
          Length = 148

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA+QI I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  +++ ++  ++
Sbjct: 119 DYLSGVTLQSIIEQKN 134


>gi|40063431|gb|AAR38242.1| rrf2 family protein [uncultured marine bacterium 580]
          Length = 159

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  + P ++S+I++   IS  +L ++   L K G+V++VRG
Sbjct: 1   MKLTTKGRFAVTAMLDLALNEKNMPIKLSEISQRQSISLSYLEQLFGKLRKQGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  + +  D I++ +++ + +E     +C    K +C     C   ++     +   
Sbjct: 61  PGGGYLVAKNHDNISVKNIISSVDEQIDATQC--GGKENCNEGHQCITHNLWTTLNSKIL 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ LV+ + +
Sbjct: 119 DYLESTTLDELVKTQRN 135


>gi|73540759|ref|YP_295279.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72118172|gb|AAZ60435.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 186

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  D  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R A+ +T+ D++ A +E     +C      +     G C    +        
Sbjct: 61  PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  + + + 
Sbjct: 121 VEYLDSVSLKNLVDQQRAKQP 141


>gi|121609329|ref|YP_997136.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
           eiseniae EF01-2]
 gi|121553969|gb|ABM58118.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
           eiseniae EF01-2]
          Length = 179

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  N  P  ++ I++   IS  +L ++   L + GIVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRNGIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
             GG  L R AD  T+ D++ + +E     +C    K +C    G C    +        
Sbjct: 61  PGGGYTLARRADDTTVADIIVSVDEPMDATQC--GGKENCLGEAGRCMTHELWTALNQHM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV  +
Sbjct: 119 KEFLEAVTLQQLVDEQ 134


>gi|182413876|ref|YP_001818942.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841090|gb|ACB75342.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
           PB90-1]
          Length = 200

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+K+ +Y +R L+   I  +      ++S++A+   +   FL +I+Q L   G V +V
Sbjct: 1   MKLSKKGEYALRSLINLGIAAEMGRKLVQVSELADYEQLPVKFLEQIMQALKDEGFVVSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKA 114
           RG+ GG RL +PA QI I  VV+  +       C +        CP    CGL  ++   
Sbjct: 61  RGKFGGYRLAKPAKQILIGQVVRLIDGPLAPIGCVSQTAYVPCTCPDETHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQYSIECLVR 132
            NA  ++L +YS+  +V 
Sbjct: 121 RNAIANILDRYSLADVVE 138


>gi|170717785|ref|YP_001783506.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
           2336]
 gi|168825914|gb|ACA31285.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
           2336]
          Length = 135

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++ +  P  ++ I+E   IS  +L ++   L + G+V++VRG
Sbjct: 1   MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L    DQI+I  V+ A  E+  V +C  +   DC     C   S+  +      
Sbjct: 61  PGGGYQLGLSTDQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L + +I  LV  ++ 
Sbjct: 119 NFLNEITIAELVAKQAK 135


>gi|253701613|ref|YP_003022802.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251776463|gb|ACT19044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 136

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A         IS+IA A  + + FL KI Q   K G+V + RG
Sbjct: 2   MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVSSSRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA QIT+ +VV+A E       C       C   G C +  V ++      
Sbjct: 62  TGGGFVLGRPASQITLREVVEAVEGPILPNRCLLGSA--CDRGGPCRVHGVWKQVQTEVV 119

Query: 120 DVLTQYSIECLVRNRSS 136
            +L   +I+ L R+   
Sbjct: 120 HILDGVTIDLLARSPEQ 136


>gi|258404994|ref|YP_003197736.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
 gi|257797221|gb|ACV68158.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
          Length = 153

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R+ YG+ +L   AIH +  P  IS+IA    +S  +  KI++ L + G + +  G
Sbjct: 1   MKFSTRSRYGLHLLRDIAIHAESGPVSISEIASRHSMSLKYTEKIIRQLRQGGWLSSTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L R A  + + ++V+  E+S  + +C    +  CP  G C   S+ ++AL A +
Sbjct: 61  ARGGYQLTRQASAMPLGEIVRYLEDSPLLLDC-QKLRPGCPRCGVCLTRSLWQEALEAMY 119

Query: 120 DVLTQYSIECLVRN 133
             L  +++  LVR+
Sbjct: 120 AKLDSFTLADLVRD 133


>gi|19223865|gb|AAL86367.1|AF332574_4 putative RRF2 protein [Desulfovibrio gigas]
          Length = 150

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YG R+++  A+H+   P RIS I++   +S  +L K+++PL +AG +++ RG
Sbjct: 1   MKLSTRSRYGTRMVLDIAMHSQAGPVRISDISKRQGVSVKYLEKLIRPLKQAGFIKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L    ++I +  VV+A E    + EC     + CP+ G C    V  +A  A  
Sbjct: 61  PRGGHVLSDLPERIAVGAVVRAMEGEMALTECAKDASV-CPISGDCLTRKVWIEATRAML 119

Query: 120 DVLTQYSIECLVRNRS 135
           D L   +   L+R   
Sbjct: 120 DRLDAITFLDLMREAE 135


>gi|256828389|ref|YP_003157117.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577565|gb|ACU88701.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 138

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A++ D      + IA    IS+ ++ K++  L + G++E+ RG
Sbjct: 1   MRLTTRSRYGTRLLLDIALNQDRGWVNTTDIARRQKISQKYIEKLITGLRRGGLIESKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNA 117
             GG +L +PA  IT+ DVV++ EE   + +C        +C L G C    V  +A N 
Sbjct: 61  PFGGHKLAKPAMDITVGDVVRSLEEKVALTQCAEGEPICGECSLAGECVTQFVWIEASNV 120

Query: 118 FFDVLTQYSIECLVRNR 134
               L  Y +  LV  +
Sbjct: 121 LMQTLDSYRLGELVARK 137


>gi|145589675|ref|YP_001156272.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048081|gb|ABP34708.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 189

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I++   IS  +L ++   L +  IVE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRETHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV----GSCGLTSVLRKAL 115
             GG  L RP++++++ D++ A +E     +C    K +C       G C    +     
Sbjct: 61  PGGGYTLARPSNEVSVADIIVAVDEPLDATQC--GGKGNCHSEEDTHGRCMTHDLWSNLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +   + L+  S++ LV+ +  
Sbjct: 119 SKMVEYLSSVSLKDLVQQQEG 139


>gi|83859025|ref|ZP_00952546.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852472|gb|EAP90325.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 152

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 77/141 (54%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            LT  +++ +R+L + A+H     R   +A A  IS   L K +  L K G ++ VRGR 
Sbjct: 7   RLTNFSNFALRLLQFAALHAPNLIRTEDVARAHGISRHHLLKAVNTLEKEGFIKAVRGRN 66

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG+ L RPA+ +T+ +V++ TE    + ECF +    CPL+G C L++ ++ A  AF  V
Sbjct: 67  GGITLNRPAEDVTVGEVIRITEAPLELVECFNAETNTCPLIGVCHLSASIQTATRAFLAV 126

Query: 122 LTQYSIECLVRNRSSIKKIFN 142
           L   +I  +  NRS +    N
Sbjct: 127 LDDVTIADIAANRSVLLSRLN 147


>gi|171463236|ref|YP_001797349.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192774|gb|ACB43735.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 189

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I++   IS  +L ++   L +  IVE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREAHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP----LVGSCGLTSVLRKAL 115
             GG  L RP+ ++++ D++ A +ES    +C    K +C       G C    +     
Sbjct: 61  PGGGYTLARPSSEVSVADIIVAVDESLDATQC--GGKGNCHTDEENHGRCMTHDLWSNLN 118

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +   + L+  S++ LV+ +  
Sbjct: 119 SKMVEYLSSVSLKDLVQQQEG 139


>gi|241662560|ref|YP_002980920.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12D]
 gi|309781143|ref|ZP_07675880.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
           sp. 5_7_47FAA]
 gi|240864587|gb|ACS62248.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12D]
 gi|308919964|gb|EFP65624.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
           sp. 5_7_47FAA]
          Length = 197

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R AD +T+ D++ A +E     +C                G C    +    
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
                + L   S++ LV  +   + 
Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQP 145


>gi|298530491|ref|ZP_07017893.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509865|gb|EFI33769.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 143

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    YG R+++  A HN+  P RI  IA+   ISE +L KI++ L KAG+V+ +RG
Sbjct: 1   MKLSTTIRYGTRLMLDMAEHNETGPIRIKTIAQRQGISEKYLEKIVRLLRKAGLVDGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P ++IT+  +++A +    +  C    +  C     C    V      A  
Sbjct: 61  PGGGYVLAVPPEKITMGAILEAVQGRIELCPCLGEPE-HCEKHMYCKTRMVWNDINAAVS 119

Query: 120 DVLTQYSIECL 130
             L   ++  L
Sbjct: 120 SRLHSITLADL 130


>gi|317122069|ref|YP_004102072.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermaerobacter marianensis DSM 12885]
 gi|315592049|gb|ADU51345.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
           marianensis DSM 12885]
          Length = 141

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R +   A      P  + ++AEA  + E +L +++ PL K G+V++VRG
Sbjct: 1   MQLSTRGRYGVRAMFELARRYGQGPVPLREVAEAQQLPENYLEQLMAPLRKGGLVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   QIT+ D+V+  +                P V       V      A  
Sbjct: 61  AQGGYVLARSPRQITVADIVRLLDGPIGPET--DQEATGTPSVAD----PVWEAVRQAIT 114

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           DVL   +++ LVR     ++
Sbjct: 115 DVLEGTTLDDLVRQAEERQR 134


>gi|124267450|ref|YP_001021454.1| BadM/Rrf2 family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260225|gb|ABM95219.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
           petroleiphilum PM1]
          Length = 177

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+    IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHSGPVALAAISSRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A++IT+ D++ A +E      C           G C    +         
Sbjct: 61  PGGGYSLGRKAEEITVADIIVAVDEPIDATGCGGKENCMGEDSGRCMTHDLWASLNTKMI 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   S+  LV ++
Sbjct: 121 EFLDSISLRKLVDDQ 135


>gi|238022335|ref|ZP_04602761.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
 gi|237866949|gb|EEP67991.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
          Length = 148

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  +   +++ I+E   IS  +L ++   L +AG+VE+VRG
Sbjct: 1   MRLTTKGRFAVTAMVDLAMNAQNNAVKLNAISERQKISLSYLEQLFSKLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +PA QI I  ++ A E+     +C  S K DC     C   ++     +   
Sbjct: 61  PGGGYVLGKPAGQINIAQIITAAEDRLDATQC--SGKADCHGGAPCITHNLWESLNHTIH 118

Query: 120 DVLTQYSIECLVRN 133
           + L+  ++  L+  
Sbjct: 119 NHLSSVTLAHLIAQ 132


>gi|330992600|ref|ZP_08316548.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760799|gb|EGG77295.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 137

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IRVL+Y A + +    + +I+++  IS   L K++  L  AG+V   RGR
Sbjct: 1   MRLTLHTDYAIRVLVYLARNPERRVSVHEISDSHGISHNHLVKVVNRLSHAGVVVARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG++L     +I I D+V+  E     V  C   +   C L   C L  +L +++ AF 
Sbjct: 61  SGGLQLPCLPHEIVIGDIVRLMETDMDSVVACQPENGQHCLLADICRLRHLLAQSMRAFL 120

Query: 120 DVLTQYSIECLVRNRSS 136
            VL + ++  ++ +R +
Sbjct: 121 KVLDETTLNDILPDRRA 137


>gi|311069236|ref|YP_003974159.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           atrophaeus 1942]
 gi|310869753|gb|ADP33228.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           atrophaeus 1942]
          Length = 138

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H D P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGDGPTSLKTIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLGSEPETITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           +VL   ++E L 
Sbjct: 113 EVLDNTTLEDLA 124


>gi|288958849|ref|YP_003449190.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
 gi|288911157|dbj|BAI72646.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
          Length = 158

 Score =  150 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A      P  ++ IAE   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLSTKGRYAVMAMVDLAATSQGSPVALADIAERQEISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
             GG  L  PAD   + D++ A +E      C       C      C    +  +  N  
Sbjct: 61  PGGGYLLAHPADATRVSDIILAVDEPIRTTRCANGTPQGCRTNRSRCLTHDLWEELGNQI 120

Query: 119 FDVLTQYSIECLVRNR 134
              L+  ++  +V  R
Sbjct: 121 HMYLSSVTVADVVERR 136


>gi|118581140|ref|YP_902390.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus
           DSM 2379]
 gi|118503850|gb|ABL00333.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus
           DSM 2379]
          Length = 158

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ YG+R L   A +    P +I  I+    IS  +L +I Q L +AGI+++ RG
Sbjct: 1   MRLTTKSRYGLRALFDIAYNCGTAPAQIQDISRRQDISPRYLEQIFQNLKRAGILKSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113
            +GG  L R  D+ITIL+++ ATE+   + EC  + +       +C   GSC   +V  +
Sbjct: 61  PQGGYFLARSPDKITILEILNATEQDVLLVECAGATEKKSKRTGECAQEGSCVTQTVWEE 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A     ++ +  +++ L     ++
Sbjct: 121 ASALLGELFSGITLQTLCERGQAM 144


>gi|187927978|ref|YP_001898465.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
           12J]
 gi|187724868|gb|ACD26033.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
           12J]
          Length = 197

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R AD +T+ D++ A +E     +C                G C    +    
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
                + L   S++ LV  +   + 
Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQP 145


>gi|317405206|gb|EFV85545.1| DNA-binding protein [Achromobacter xylosoxidans C54]
          Length = 180

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146


>gi|157693157|ref|YP_001487619.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157681915|gb|ABV63059.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 139

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  A +V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E      E   + +             +  +  +A  
Sbjct: 61  AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           DVL   ++E L 
Sbjct: 113 DVLDNTTLEDLA 124


>gi|121605191|ref|YP_982520.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594160|gb|ABM37599.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 178

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  N+ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             GG  L R A +IT+ D++ + +E     +C    K +C   GS C    +     +  
Sbjct: 61  PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGSRCMTHDLWSSLNSRM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   S++ LV ++
Sbjct: 119 VEFLDSVSLQKLVDDQ 134


>gi|187478009|ref|YP_786033.1| DNA-binding protein [Bordetella avium 197N]
 gi|115422595|emb|CAJ49120.1| putative DNA-binding protein [Bordetella avium 197N]
          Length = 177

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRLRQLQEA 146


>gi|103486029|ref|YP_615590.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976106|gb|ABF52257.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 143

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  +DY +R+LM  A   +    + +IA    IS   L K+ Q L   G V   RGR
Sbjct: 1   MRLSLHSDYALRILMALAATGEQ-MSVDEIASHYGISRNHLAKVAQRLQALGYVSAQRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R   ++    VV+  E    + EC       CP+ G CGL   L  AL AF  
Sbjct: 60  GGGLTLARAPSEVIAGTVVREFENLGGLVECMDPATSTCPVRGGCGLQGALGGALAAFLA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L +Y++  L+   +  + +  A
Sbjct: 120 HLDRYTLADLLPQPARFRALLGA 142


>gi|149201796|ref|ZP_01878770.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
 gi|149144844|gb|EDM32873.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
          Length = 156

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TDY +RVL+Y A +       I + A+   IS   L K++  L+  G +E +RG
Sbjct: 1   MRLTKFTDYSLRVLLYAATLKPGELTTIEETAKLYDISRAHLKKVVLQLIHEGFLEGIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL R   +I +  VV+  E  F +AECF+     C +   C L  VL  AL  F 
Sbjct: 61  RSGGFRLARSPGEINLGQVVRKMEPEFALAECFSPDNA-CRVTKGCRLPIVLNLALTNFL 119

Query: 120 DVLTQYSIECLV 131
           +    +++  L 
Sbjct: 120 NTFDDFTLADLA 131


>gi|85705587|ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217]
 gi|85670012|gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217]
          Length = 138

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   +     +++A+   +S   L KI+Q L + G++ET RG 
Sbjct: 1   MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +PA ++ +  +V+  EE   + ECFA+   DC + G C L + LR A  AF  
Sbjct: 61  GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120

Query: 121 VLTQYSIECLVRNRS 135
            L   ++  +  N +
Sbjct: 121 DLEGSTLAAIALNPA 135


>gi|293606133|ref|ZP_06688498.1| iron-sulfur cluster assembly transcription factor IscR
           [Achromobacter piechaudii ATCC 43553]
 gi|292815588|gb|EFF74704.1| iron-sulfur cluster assembly transcription factor IscR
           [Achromobacter piechaudii ATCC 43553]
          Length = 180

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146


>gi|118594588|ref|ZP_01551935.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
           HTCC2181]
 gi|118440366|gb|EAV46993.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
           HTCC2181]
          Length = 157

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H  D P  ++ I+    IS  +L ++   + + G+V++VRG
Sbjct: 1   MKLTTKGRFAVTAMLDLAMHETDSPVTLTAISARQSISLSYLEQLFSQMRRKGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG    +    IT+ ++V A +E     +C  S   +C   G C    +         
Sbjct: 61  PGGGYLSAQNHKDITVKNIVTAVDEKLDSTQCGGSE--NCHEGGRCITHDLWVSLNTKVL 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   S++ L+  +    K
Sbjct: 119 DYLDGLSLQDLIDGQKDRNK 138


>gi|197304012|ref|ZP_03169044.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
           29176]
 gi|197296980|gb|EDY31548.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
           29176]
          Length = 136

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++  A    +    + +IA    ISE +L  IL+ LV  G++  +RG
Sbjct: 1   MIISTRGRYALRVMIDLAGQDPNTYTPLKEIAARQEISEKYLENILKSLVTGGLIFGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +  +  TI  +++ TE S     C   +  +C     C    + +K      
Sbjct: 61  KGGGYKLTKKPEDYTISSILRLTEGSLAPVACLEENATECEREAVCPTRPLWKKLDTLIQ 120

Query: 120 DVLTQYSIECLVR 132
           D L   S++ L+ 
Sbjct: 121 DYLGSVSLKDLID 133


>gi|89900960|ref|YP_523431.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345697|gb|ABD69900.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 178

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  ++ P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             GG  L R   +IT+ +++ + +E      C    K +C   G+ C    +        
Sbjct: 61  PGGGYTLARNPAEITVAEIITSVDEPIDATHCAG--KENCLGEGARCMTHDLWTSLNTKM 118

Query: 119 FDVLTQYSIECLVRNR 134
            + L   +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134


>gi|237806924|ref|YP_002891364.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237499185|gb|ACQ91778.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 151

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A+  D   + I+++A+   IS   + KI+  L   G ++T+RG
Sbjct: 1   MQLTLFTDYALRTLVFLALQPDQQLSTITEVADRFSISRNHVVKIVHQLGMKGYIDTIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL R A  I + +++   E    + +C       C L   C   +++RKA+ AF 
Sbjct: 61  KHGGIRLARSARDINLGNLIADMENVSCLLDCQREG---CRLAPGCRFQAIMRKAMRAFM 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            VL+++++  LVR+   +  +  
Sbjct: 118 GVLSEFTLADLVRDEEQMCGLLG 140


>gi|167768072|ref|ZP_02440125.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
 gi|317499363|ref|ZP_07957631.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710401|gb|EDS20980.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
 gi|291561069|emb|CBL39869.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SSC/2]
 gi|316893332|gb|EFV15546.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 145

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A+H+      +  I+    IS  +L +I++ L   G ++++RG
Sbjct: 1   MKISTKGRYAVRLMYDLAMHHTGDWIALKDISRRQEISVKYLEQIVRQLSIRGYLKSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R     TI +++K TE S     C       C     C    +         
Sbjct: 61  PKGGYQLSRDPKDYTIYEILKITEGSLQPVACLDDKVNQCERYHECPTIEIWEGLGQVIE 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L+  ++E +V N++ IK
Sbjct: 121 EYLSGITLEDVV-NKARIK 138


>gi|253999553|ref|YP_003051616.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
           SIP3-4]
 gi|253986232|gb|ACT51089.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           SIP3-4]
          Length = 162

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L ++G+V +VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  + +   +I++ +++ A +E     +C      +C     C    +         
Sbjct: 61  PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L+  S+E LV ++S  + I
Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139


>gi|319651668|ref|ZP_08005795.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
 gi|317396735|gb|EFV77446.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
          Length = 139

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYILGKEPTKITAGDIIRVLEGPISPVEGIEDEEP--------AKRELWMRIRDAVK 112

Query: 120 DVLTQYSIECLVRN 133
           DVL   ++E L  +
Sbjct: 113 DVLDNTTLEDLASH 126


>gi|296135538|ref|YP_003642780.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|294339667|emb|CAZ88027.1| HTH-type transcriptional regulator iscR [Thiomonas sp. 3As]
 gi|295795660|gb|ADG30450.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 178

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDVAMRQHLGPVTLAGISQRQHISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R +++I+I D++ A +E     +C      +    G C    +  +      
Sbjct: 61  PGGGYTLSRKSEEISIADIIIAVDEPLDATQCGGKENCNGEDNGPCMTHDLWAQLNAKMV 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV   
Sbjct: 121 EFLDSVNLKGLVEQN 135


>gi|163857090|ref|YP_001631388.1| hypothetical protein Bpet2778 [Bordetella petrii DSM 12804]
 gi|163260818|emb|CAP43120.1| unnamed protein product [Bordetella petrii]
          Length = 179

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C   H  DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATNCGGKH--DCTSGKDGKSGKCMTHELWTTL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRLRQLQEA 146


>gi|313201580|ref|YP_004040238.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
 gi|312440896|gb|ADQ85002.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           MP688]
          Length = 162

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L ++G+V +VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  + +   +I++ +++ A +E     +C      +C     C    +         
Sbjct: 61  PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           D L+  S+E LV ++S  + I
Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139


>gi|218282015|ref|ZP_03488327.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
 gi|218217002|gb|EEC90540.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
          Length = 142

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+L+  A HND     +  IA    IS+ +L +I+  L K+ +V++ RG
Sbjct: 1   MKISTKGRYALRLLIDLAQHNDSGFITLKDIAARQNISKKYLEQIVPILTKSQMVQSNRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L +  DQI + DV+ ATE +     C  S    CP    C    +         
Sbjct: 61  FQGGYKLAKNIDQICVYDVLVATEGNLSCVACLDSDVNTCPRKEDCATLYIYEGLNQVIK 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +++ ++ +  S
Sbjct: 121 TYLKGITLQDILSHEQS 137


>gi|332560946|ref|ZP_08415264.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332274744|gb|EGJ20060.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 143

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +TK +DY +RVL+Y A I +     I + A    IS+  L K++  L+ AG ++  RGR 
Sbjct: 1   MTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRGRT 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I + +V++ATE  F + ECF      C +   C L  +L KA+++F D 
Sbjct: 61  GGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFMDT 119

Query: 122 LTQYSIECLV 131
           L +++I  ++
Sbjct: 120 LDEFTIADVM 129


>gi|160943690|ref|ZP_02090921.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444864|gb|EDP21867.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103977|emb|CBL01521.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
           prausnitzii SL3/3]
          Length = 143

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H  +    + ++A    ISE +L  IL+ LV+ G +E +RG
Sbjct: 1   MIVSTKGRYALRVMIDLAEHQSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R  DQ T+ +++  TE S     C       C  + +C    + +   +   
Sbjct: 61  KGGGYRLTRSPDQYTVSEILMLTEGSLAPVSCLTPGASACARMANCRTYEMWKGLNDLIS 120

Query: 120 DVLTQYSIECLV 131
           D   + ++  L 
Sbjct: 121 DYFGKITLADLA 132


>gi|90021059|ref|YP_526886.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89950659|gb|ABD80674.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
           degradans 2-40]
          Length = 164

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I+    IS  +L ++   L ++ +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQSGPVSLADISRRQQISLSYLEQLFAKLRQSTLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A  + +  ++ A  ES     C      +C     C    +     +   
Sbjct: 61  PGGGYKLNRSAADVHVAQIIDAVNESVDATNCGGQG--NCQQGEVCLTHYLWSDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L+  S+  L+  R  +K + N
Sbjct: 119 TFLSGISLADLLA-RQDVKSVAN 140


>gi|251798334|ref|YP_003013065.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247545960|gb|ACT02979.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 139

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + IT  DV++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILSKEPETITAGDVIRILEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112

Query: 120 DVLTQYSIECLVRNRSS 136
            VL Q ++  LV  + +
Sbjct: 113 SVLDQTTLADLVNYQDA 129


>gi|153872299|ref|ZP_02001233.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
 gi|152071233|gb|EDN68765.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
          Length = 130

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI H   P  ++ I++   IS  +L ++   L K G+V++ RG
Sbjct: 1   MRLTTKGRYAVTAMLDLAINHTKGPITLADISQRQGISLSYLEQLFSRLRKRGLVDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD I I DV+ A +E+    +C      +C    +C    +         
Sbjct: 61  PGGGYRLSRTADTIVIADVIAAVDETVDATKCKGQK--NCRDSRACLTHQLWTDLSEQIR 118

Query: 120 DVLTQYSI 127
           + L+  +I
Sbjct: 119 EFLSDITI 126


>gi|34498942|ref|NP_903157.1| hypothetical protein CV_3487 [Chromobacterium violaceum ATCC 12472]
 gi|34104791|gb|AAQ61148.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 146

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RVLMY           I +IAE   +S   L K++  + + G + T RG
Sbjct: 1   MQLTRFTDLGLRVLMYLTGQQPGQLATIPEIAERFEVSRNHLVKVVHFMAQQGWLVTSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L RP +   + +VV+  E    + +C    +  C L   C L   L +AL AFF
Sbjct: 61  KGGGMTLARPPEHYRLGEVVRMLEGKPQLIDCV---EPPCALSRGCLLKGALDEALAAFF 117

Query: 120 DVLTQYSIECLVRNRSS 136
             L  Y++  +V + + 
Sbjct: 118 LSLDGYTLRDIVASPTG 134


>gi|221194677|ref|ZP_03567734.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
 gi|221185581|gb|EEE17971.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
          Length = 142

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            + +  Y +R +   A+H D    +  ++E   IS  +L +++  + KAG VE++RG+ G
Sbjct: 5   FSTKGMYALRAMADLAVH-DGWISLGDVSERQHISRKYLEQVISLMHKAGYVESLRGKGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G RL R  ++ T+ ++++ATE +   A C   +++  CP +GSC   ++ R         
Sbjct: 64  GYRLTRKPEEYTLGEILRATEGNLAPASCLNCTNETLCPQMGSCTTVNIWRDLGKMTSSF 123

Query: 122 LTQYSIECLVRNRSSIK 138
           L   ++  +  +  +I+
Sbjct: 124 LDSKTLADIAWHEGNIQ 140


>gi|150016720|ref|YP_001308974.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903185|gb|ABR34018.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 130

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+L+K +DY  R+L+Y A + D    + ++A    ISE  L KI+  L K   V + +GR
Sbjct: 1   MNLSKFSDYAFRILIYLAKNQDKICTVEELASNLEISEHHLKKIVHRLGKTEYVISTKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      I +  ++  TEES  ++ECF+S K  C     C L ++L  ++N+F D
Sbjct: 61  NGGLKLGLEPKDINLGKILIITEESISISECFSSAKHTCS-TSKCKLKAILSSSINSFVD 119

Query: 121 VLTQYSIECLV 131
             ++Y++E ++
Sbjct: 120 EFSKYTLEDIL 130


>gi|291279503|ref|YP_003496338.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
           desulfuricans SSM1]
 gi|290754205|dbj|BAI80582.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
           desulfuricans SSM1]
          Length = 134

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK  DY +RV+++ A  + D     S+++E C I + FL KILQ L K G++++ +G
Sbjct: 1   MKLTKAADYALRVMLFIASSDKDKTFMRSELSEICDIPDSFLGKILQTLAKNGLLDSSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG +L +  ++IT+ D+V A +   ++ EC    ++ C     C + +VL K  N F 
Sbjct: 61  KKGGFKLSKSPEEITLYDIVTAIDGDVYINECIDKPEV-CKRSDICKINNVLAKIKNNFV 119

Query: 120 DVLTQYSIECLVRNR 134
             L  Y+++ L+ N+
Sbjct: 120 KELKNYTLKDLLTNK 134


>gi|154253130|ref|YP_001413954.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154157080|gb|ABS64297.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 145

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/141 (41%), Positives = 85/141 (60%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L Y A+  D    IS++AE+  IS   L K+   L +AG VET+RGR
Sbjct: 1   MRLTLHTDYALRLLTYLALKPDEIATISEVAESYSISRNHLTKVAHELGRAGFVETLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A +I I DVV+A EE F + ECFA+    C +  +C L  VL++AL+A+  
Sbjct: 61  GGGLRLARAAGKIGIGDVVRAMEEDFCIVECFAAETDRCRIGPACRLKRVLKQALDAWLA 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
           VL   ++  LV     ++++ 
Sbjct: 121 VLDDTTLADLVERPQPLRRLL 141


>gi|95930242|ref|ZP_01312980.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133705|gb|EAT15366.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
          Length = 150

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +R ++  ++   + P  I +I+    IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLSTKAQYAVRAMVRLSLEQRETPVSIREISNHENISLTYLEQLFAKLRRGELVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPADQI +  ++ + EE+     C      +C     C   +V ++      
Sbjct: 61  PGGGYVLARPADQIKVDQIIDSVEETLIPVSCMDEFG-NCACSDQCVTHTVWQELGERIR 119

Query: 120 DVLTQYSIECLVRNRSS 136
             L+  SIE L R    
Sbjct: 120 GFLSSVSIEDLTREAQE 136


>gi|154686893|ref|YP_001422054.1| YrzC [Bacillus amyloliquefaciens FZB42]
 gi|154352744|gb|ABS74823.1| YrzC [Bacillus amyloliquefaciens FZB42]
          Length = 138

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H D P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGDGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           DVL   ++E L 
Sbjct: 113 DVLDSTTLEDLA 124


>gi|226941780|ref|YP_002796854.1| transcriptional regulator [Laribacter hongkongensis HLHK9]
 gi|226716707|gb|ACO75845.1| Predicted transcriptional regulator [Laribacter hongkongensis
           HLHK9]
          Length = 159

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L +A +VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLALRQHKGPVTLAGISERQDISLSYLEQLFGKLRRAELVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT+ D++ A +E     +C      DC     C    +        +
Sbjct: 61  PGGGYCLARQPAAITVADIIIAVDEPLDATQCGGRE--DCHDSRRCMTHDLWIDLNRTIY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  L+  + +
Sbjct: 119 AYLEGITLGSLMDRQRA 135


>gi|198282957|ref|YP_002219278.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666431|ref|YP_002425160.1| iron-sulfur cluster assembly transcription factor IscR
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247478|gb|ACH83071.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518644|gb|ACK79230.1| iron-sulfur cluster assembly transcription factor IscR
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 162

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++       ++ I++   IS  +L ++   L + G+VE+VRG
Sbjct: 1   MKLTTKGRYAVTAMLDLALNQRGGVVTVADISQRQQISVAYLEQLFGRLRRFGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
             GG RL  P  +I +  +V+A  ES    +C     + C   G  C    +  +  N  
Sbjct: 61  PGGGYRLAMPDSEIPLTRIVEAVNESISTTQCGGDPHLCCKGDGQQCLTHDLWEELGNRI 120

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++  LV+ +
Sbjct: 121 AEFLGGITLGQLVQKQ 136


>gi|153814361|ref|ZP_01967029.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
 gi|317500076|ref|ZP_07958311.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087700|ref|ZP_08336626.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848757|gb|EDK25675.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
 gi|316898561|gb|EFV20597.1| iron-sulfur cluster assembly transcription factor IscR
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409681|gb|EGG89117.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 143

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A + +     +  +A    IS  +L +IL  L K G++E V G
Sbjct: 1   MLISTKGRYALRVMIDLAQNKESGHVAMKIVAARQGISLKYLERILPVLTKNGLIEGVHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RLCR   +  + ++++ TE +     C   +   C     C    +         
Sbjct: 61  KGGGYRLCREPKEYKVGEILRLTEGNLAPVSCLECNAPVCERKDQCHTIGMWTDFHKMIN 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D     ++E L+   + + +
Sbjct: 121 DYFDGITLEDLMHRNTELSE 140


>gi|217965274|ref|YP_002350952.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|217334544|gb|ACK40338.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|307570170|emb|CAR83349.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
          Length = 138

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATRQNVSPTYLSKVLTMLVKAGFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|34496550|ref|NP_900765.1| hypothetical protein CV_1095 [Chromobacterium violaceum ATCC 12472]
 gi|34102404|gb|AAQ58770.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 164

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I+E   IS  +L ++   L +A +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMREEGGPVTLAGISERQSISLSYLEQLFGKLRRAELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +    I++ D++ A +E     +C      +C     C    +        F
Sbjct: 61  PGGGYTLAKQICDISVADIIVAVDEPVDATQCGGRE--NCRGSQRCMTHDLWTNLNVTIF 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L++ S+  LV  + + ++
Sbjct: 119 DYLSKVSLASLVEEQHAKEQ 138


>gi|144900519|emb|CAM77383.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 157

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL++  +       I++IAE   IS+  L K++  L +AG +ETVRG+
Sbjct: 13  MRLTLHTDYALRVLVHVGLRGGELVTINEIAECHGISKNHLTKVVHQLGRAGFLETVRGK 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL      + + + V+  E+ F +A+C  AS+   C +  +C       + ++AFF
Sbjct: 73  YGGIRLLVDPRTLRLGEFVRQVEDDFALAQCMRASNADSCRVSAACLARRAFGQGIDAFF 132

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L  +++  ++    ++  +
Sbjct: 133 KALNVHTLADMIDAERALPPL 153


>gi|115376145|ref|ZP_01463389.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366868|gb|EAU65859.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 264

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++    ND P     +AE   IS  FL KI   L KAGIV    G R
Sbjct: 90  HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 149

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL +  + I+ L++V A E    + +C         F          G C + +V+ 
Sbjct: 150 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 209

Query: 113 KALNAFFDVLTQYSIECLVR 132
           +A  +  + L + S+  + +
Sbjct: 210 RAEKSMRETLAKESLADVAK 229


>gi|295106061|emb|CBL03604.1| transcriptional regulator, BadM/Rrf2 family [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 136

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++  A    +  P  + Q A    +S  +L ++   LVKAGI++++R
Sbjct: 1   MMISTKGRYALRLMIDIASREQDGSPVTMRQAAAREDLSVKYLEQLGGALVKAGILKSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L +PA+ IT  DV++ATE       C       CP    C   +  R      
Sbjct: 61  GVSGGYLLAKPAEDITAGDVLRATEGGCAPVACLEDGAEACPRRSECVAVNFWRGLDRTI 120

Query: 119 FDVLTQYSIECLVR 132
              +   ++  LV+
Sbjct: 121 EGYVDGVTLADLVK 134


>gi|261400315|ref|ZP_05986440.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           lactamica ATCC 23970]
 gi|269209934|gb|EEZ76389.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           lactamica ATCC 23970]
          Length = 148

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135


>gi|171910736|ref|ZP_02926206.1| RfF2 family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 195

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MHLTK+ +Y +R L+   I          +S +AE   +   F+  ILQ L  AG VE+ 
Sbjct: 1   MHLTKKGEYALRTLIRLGIAQRQGKDVVSVSNLAEGENLPFKFIENILQELRLAGYVESK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKA 114
           RG+ GG RL +P   ITI +VV+  +       C +     +  CP    CGL  ++   
Sbjct: 61  RGKEGGCRLAKPQVDITIGEVVRLIDGRLAPIGCASETDYERCTCPDEHHCGLRMLMIDV 120

Query: 115 LNAFFDVLTQYSIECLV 131
            NA   +L +Y++  +V
Sbjct: 121 RNAIAQILDRYTLADVV 137


>gi|288555374|ref|YP_003427309.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
 gi|288546534|gb|ADC50417.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
          Length = 139

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1   MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A++IT  D+++  E      E     +             +  K  +A  
Sbjct: 61  AYGGYMLAKDANEITAGDIIRVLEGPISPVEVMDDEEP--------AKRDLWIKIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           DVL   +++ L +
Sbjct: 113 DVLDNTTLDDLAK 125


>gi|311107146|ref|YP_003979999.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
 gi|310761835|gb|ADP17284.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
          Length = 180

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146


>gi|224543708|ref|ZP_03684247.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523361|gb|EEF92466.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
           15897]
          Length = 143

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A H+      + +IA    ISE +L  I++ L K   VE +RG
Sbjct: 1   MMISTKGRYALRVMIDLAQHDRSKYIPLKEIAARQDISEKYLEIIIKSLSKKHFVEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL    +  ++  ++K TE +     C A     C     C    +         
Sbjct: 61  KGGGYRLTHAPEDYSVASILKVTEGTLAPVSCLADECNTCERASYCNTLPMWTGLHKVIT 120

Query: 120 DVLTQYSIECLV 131
           D L   S+  LV
Sbjct: 121 DYLEGVSLSDLV 132


>gi|257784202|ref|YP_003179419.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
 gi|257472709|gb|ACV50828.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
          Length = 150

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            + +  Y +R +   A+H  +   +  ++E   IS  +L +++  + KAG V+++RG+ G
Sbjct: 5   FSTKGMYALRAMADLAVHEGW-VSLGDVSERQNISRKYLEQVIALMHKAGYVDSLRGKGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
           G RL R  +  T+ ++++A E +   A C        CP + SC   ++ R         
Sbjct: 64  GYRLTRKPEDYTLGEILRAAEGNLAPASCLNCTNTTLCPQMESCTTINIWRDLGRMTSSF 123

Query: 122 LTQYSIECLVRNRSSIK 138
           L   ++  +  N  ++ 
Sbjct: 124 LDSKTLADIAHNEGNMH 140


>gi|134291578|ref|YP_001115347.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134767|gb|ABO59092.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 170

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MHLT  TDY +RV+MY A+       + I +IA A  IS   L K++  L + G +ET R
Sbjct: 1   MHLTLYTDYTLRVMMYLALKYPGGGVSTIDEIAGAYGISRNHLTKVVHELSQLGFIETSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNA 117
           GR GG  L R  +QI++ ++V+  E+ F V  C        C +   C L   L +A++A
Sbjct: 61  GRAGGACLARAPEQISVGEIVRTAEKDFAVVSCHDMTVAHGCTIFPVCNLRHRLYRAVDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           F   L   ++   +   +    +  
Sbjct: 121 FLHELDTMTLREAIAAPTVAATVLG 145


>gi|33592860|ref|NP_880504.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33596642|ref|NP_884285.1| putative DNA-binding protein [Bordetella parapertussis 12822]
 gi|33601258|ref|NP_888818.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|33572508|emb|CAE42084.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
 gi|33573343|emb|CAE37327.1| putative DNA-binding protein [Bordetella parapertussis]
 gi|33575693|emb|CAE32771.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
 gi|332382273|gb|AEE67120.1| putative DNA-binding protein [Bordetella pertussis CS]
          Length = 170

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKA 114
             GG  L R A  +T+ D++ A +E      C    K DC        G C    +    
Sbjct: 61  PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWTTL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                D L   S++ LV ++  ++++  A
Sbjct: 119 NRKMVDYLDSVSLQDLV-DQQRVRQLQEA 146


>gi|313624752|gb|EFR94699.1| putative transcriptional regulator [Listeria innocua FSL J1-023]
          Length = 138

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKAAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ +I  +V
Sbjct: 119 DYLSKQTIGSIV 130


>gi|291458397|ref|ZP_06597787.1| iron-sulfur cluster assembly transcription factor IscR
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418930|gb|EFE92649.1| iron-sulfur cluster assembly transcription factor IscR
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 134

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  L+  A ++D   P  I +I+E   IS  +L +I+  +VK G + +VR
Sbjct: 1   MMISTKGRYALTTLIDIAENSDGRTPVSIKEISERRGISLKYLEQIIALMVKGGFLRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG    RPA +I + D++ A E +    EC    K  C    +C    + R+   A 
Sbjct: 61  GARGGYLFTRPASEIAVGDILNAAEGTLAPVECLMDGK-SCEKSATCPTFPLYREIDEAI 119

Query: 119 FDVLTQYSIECLVRN 133
           + V+ +Y +  L++ 
Sbjct: 120 YSVVNRYHLSDLLKK 134


>gi|325983001|ref|YP_004295403.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
           AL212]
 gi|325532520|gb|ADZ27241.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
           AL212]
          Length = 162

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  A+    +P  ++ I++   IS  +L ++   L ++ +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDLALQQSSHPITLADISQRQKISLSYLEQLFAKLRQSELVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D+++I D++ A +E     +C    K +C   G C    +  K     F
Sbjct: 61  PGGGYCLSKDLDKVSIADIILAVDEPIDATQC--GGKENCHNDGKCMTHDLWAKLNELIF 118

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ LV N+
Sbjct: 119 EYLGAVTLKELVDNQ 133


>gi|319935067|ref|ZP_08009510.1| iron-sulfur cluster assembly transcription factor IscR
           [Coprobacillus sp. 29_1]
 gi|319810085|gb|EFW06454.1| iron-sulfur cluster assembly transcription factor IscR
           [Coprobacillus sp. 29_1]
          Length = 143

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A H+ +    + +IA+   ISE +L  I++ LV+A  V+ +RG
Sbjct: 1   MMISTKGRYALRIMLDLAEHDCEVYLPLREIAQRQNISEKYLEIIIKILVQARFVQGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R     T+  ++K TE S     C       C     C    + +K      
Sbjct: 61  KGGGYRLVRDPHTYTVGSILKLTEGSLAPVACLECSPNTCERSQLCKTLPMWQKLDQMID 120

Query: 120 DVLTQYSIECLVRN 133
           +     ++  L+ +
Sbjct: 121 EYFEGITLADLMNS 134


>gi|16799715|ref|NP_469983.1| hypothetical protein lin0640 [Listeria innocua Clip11262]
 gi|16802678|ref|NP_464163.1| hypothetical protein lmo0636 [Listeria monocytogenes EGD-e]
 gi|224502064|ref|ZP_03670371.1| hypothetical protein LmonFR_06027 [Listeria monocytogenes FSL
           R2-561]
 gi|255030335|ref|ZP_05302286.1| hypothetical protein LmonL_16821 [Listeria monocytogenes LO28]
 gi|16410025|emb|CAC98714.1| lmo0636 [Listeria monocytogenes EGD-e]
 gi|16413080|emb|CAC95872.1| lin0640 [Listeria innocua Clip11262]
          Length = 138

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG VE+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|169795834|ref|YP_001713627.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|260554898|ref|ZP_05827119.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
           19606]
 gi|301345360|ref|ZP_07226101.1| putative transcriptional regulator [Acinetobacter baumannii AB056]
 gi|301512433|ref|ZP_07237670.1| putative transcriptional regulator [Acinetobacter baumannii AB058]
 gi|301596111|ref|ZP_07241119.1| putative transcriptional regulator [Acinetobacter baumannii AB059]
 gi|332853212|ref|ZP_08434632.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332869405|ref|ZP_08438771.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
 gi|169148761|emb|CAM86627.1| conserved hypothetical protein; putative transcriptional regulator
           [Acinetobacter baumannii AYE]
 gi|193077439|gb|ABO12252.2| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
 gi|260411440|gb|EEX04737.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
           19606]
 gi|332728782|gb|EGJ60142.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013150]
 gi|332732736|gb|EGJ63953.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
           6013113]
          Length = 182

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G RG
Sbjct: 4   ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ +
Sbjct: 64  GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  D L  +++  +   
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143


>gi|323490017|ref|ZP_08095238.1| putative HTH-type transcriptional regulator [Planococcus
           donghaensis MPA1U2]
 gi|323396313|gb|EGA89138.1| putative HTH-type transcriptional regulator [Planococcus
           donghaensis MPA1U2]
          Length = 138

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIDLAKHYGEGPLPLRKIAAQNDLSEAYLEQLVGPLRNSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I+  DV++  E      E     K             +  +  +A  
Sbjct: 61  AYGGYMLTRHPKEISAGDVIRVLEGPIQPVEGIEDEKQP--------QRELWVRIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSS 136
           +VL   +IE L   ++ 
Sbjct: 113 NVLDTTTIEDLANAKND 129


>gi|310824816|ref|YP_003957174.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397888|gb|ADO75347.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 177

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++    ND P     +AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL +  + I+ L++V A E    + +C         F          G C + +V+ 
Sbjct: 63  GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 122

Query: 113 KALNAFFDVLTQYSIECLVR 132
           +A  +  + L + S+  + +
Sbjct: 123 RAEKSMRETLAKESLADVAK 142


>gi|225026056|ref|ZP_03715248.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
 gi|224956618|gb|EEG37827.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
          Length = 136

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++Y A ++ +    + +IAE   IS  +L  I+  L K  ++ + RG
Sbjct: 1   MMVSSKGRYALRVMIYLAQNDREELIPLKEIAENQNISMKYLEMIVSLLHKGNMLISGRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG RL R   + TI  ++K TE++     C    K+ C   G C    + +K      
Sbjct: 61  KKGGYRLARKPSEYTIGSILKLTEKTLAPVNCLEGGKVTCEKAGYCITLPMWQKLDGIID 120

Query: 120 DVLTQYSIECLVRNR 134
           D L   ++E L+  R
Sbjct: 121 DYLETVTLEDLLEGR 135


>gi|332655322|ref|ZP_08421062.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
 gi|332515827|gb|EGJ45437.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
          Length = 142

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ R  Y +RV++  A H +D    + ++A+   IS  +L +I+  L K  +VE V G+ 
Sbjct: 2   ISTRGRYALRVMIDLAEHADDGYIPMKEVAQRQGISLKYLERIMPALSKNNLVEGVHGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R  +  T  ++++  E S     C       C    +C   ++ +K  +     
Sbjct: 62  GGYRLSRKPEDYTAGEILRLVEGSLAPVACLECGAEPCSRQDTCKTIAMWKKFYDLVNGY 121

Query: 122 LTQYSIECLV 131
               ++  L 
Sbjct: 122 FDHITVADLA 131


>gi|260576973|ref|ZP_05844954.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259020815|gb|EEW24130.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 157

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +T+   RVLM CA++     R ++IA AC  S   L  ++  L   G +ETVRGR
Sbjct: 1   MRLTTKTNLAARVLMACAVNEGVTLRTAEIARACNASLNHLLLVVNALHTNGFIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L RP  Q+++ +V +  E     AECF      CPL  +C L S + +A+ AF+ 
Sbjct: 61  SGGLHLTRPPAQVSMGEVFRTFESGTPFAECFDPDTNTCPLSTTCRLRSYVARAVEAFYH 120

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            +   ++E LV+    +  + 
Sbjct: 121 EMDMVTLEDLVKGNCGLSGLL 141


>gi|218887633|ref|YP_002436954.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758587|gb|ACL09486.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 264

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   + YG R+++  A H+   P  +  +A    +S+ +L KI + L +AG++ + RG
Sbjct: 1   MRLLTNSRYGTRMMLDIAQHSRLGPVLMRDVARRLDVSQKYLEKISRSLKEAGLLTSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  D I++ DVV+  E    +  C    + +C     C    V ++   A F
Sbjct: 61  PSGGHRLGRAPDDISVGDVVRVLEGGAEMVGC-GRDEENCTHAPGCLTRMVWKECSRAMF 119

Query: 120 DVLTQYSIECLVR 132
             L   +   L+R
Sbjct: 120 ARLDAITFGELLR 132


>gi|308174453|ref|YP_003921158.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
 gi|307607317|emb|CBI43688.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
 gi|328554372|gb|AEB24864.1| transcription repressor [Bacillus amyloliquefaciens TA208]
 gi|328912776|gb|AEB64372.1| transcription repressor [Bacillus amyloliquefaciens LL3]
          Length = 138

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           DVL   ++E L 
Sbjct: 113 DVLDSTTLEDLA 124


>gi|300704652|ref|YP_003746255.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CFBP2957]
 gi|299072316|emb|CBJ43650.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum CFBP2957]
          Length = 191

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG  
Sbjct: 1   MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNAF 118
           GG  L R AD +T+ D++ A +E     +C    K +C      G C    +        
Sbjct: 61  GGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQKM 118

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  +   + 
Sbjct: 119 VEYLDSVSLQDLVDQQRERQP 139


>gi|28899582|ref|NP_799187.1| transcriptional repressor NsrR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839631|ref|ZP_01992298.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
 gi|260361405|ref|ZP_05774467.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           K5030]
 gi|260876677|ref|ZP_05889032.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896630|ref|ZP_05905126.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           Peru-466]
 gi|260900889|ref|ZP_05909284.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AQ4037]
 gi|731996|sp|P40610|NSRR_VIBPA RecName: Full=HTH-type transcriptional repressor nsrR
 gi|507739|gb|AAA62191.1| unnamed ORF; similar to ORF 3' of E.coli PurA and ORF 5' of
           Shigella flexneri VacB: Swiss-Prot Accession Number
           P21498 [Vibrio parahaemolyticus]
 gi|28807818|dbj|BAC61071.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746852|gb|EDM57840.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
 gi|308086327|gb|EFO36022.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           Peru-466]
 gi|308093960|gb|EFO43655.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AN-5034]
 gi|308106515|gb|EFO44055.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           AQ4037]
 gi|308112892|gb|EFO50432.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
           K5030]
          Length = 141

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    +  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVEF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L + +IE L+ + S +  + 
Sbjct: 117 AELDECTIESLLSDNSELLILL 138


>gi|288572865|ref|ZP_06391222.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568606|gb|EFC90163.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 140

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T YG+R ++  A       P  IS++A+   +SE +L ++   L K+G+V +VR
Sbjct: 1   MKLSTKTRYGLRAMIDLARGYGTGRPISISEVAKNQTLSESYLEQLFSKLRKSGLVSSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +I   +++ + E    +A+C       C   G C    +  K  ++ 
Sbjct: 61  GAQGGYLLSRDPKEILTSEIIDSLEGPISLADCVDYGT--CERGGCCPARFLWEKVSDSI 118

Query: 119 FDVLTQYSIECLVRNRS 135
             V +  ++  ++    
Sbjct: 119 ERVTSSTTLWDIIEEYD 135


>gi|125975009|ref|YP_001038919.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256005105|ref|ZP_05430075.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|125715234|gb|ABN53726.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|255990956|gb|EEU01068.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|316939170|gb|ADU73204.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 147

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R ++  A+++      +  IAE   ISE +L ++   L KA IV++++G
Sbjct: 1   MKMSTKGRYGLRAMLDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L      IT+  +++  E +  V +       +      C    V  K   +  
Sbjct: 61  AQGGYVLADDPSNITVGKILRTLEGNLNVVD-IDDRDSEVSKEEKCINEFVWNKINKSID 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
            V+   ++  L+R    ++ 
Sbjct: 120 KVVDNITLGDLLREYQKLED 139


>gi|89100970|ref|ZP_01173815.1| YrzC [Bacillus sp. NRRL B-14911]
 gi|89084306|gb|EAR63462.1| YrzC [Bacillus sp. NRRL B-14911]
          Length = 139

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V ++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPISLKSIAQTNDLSEHYLEQLIAPLRNAGLVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLGHEPADITSGDIIRVLEGPISPVEGIEDEEP--------AKRELWMRIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSS 136
           +VL   ++E L  +  S
Sbjct: 113 EVLDSTTLEDLANHTDS 129


>gi|255767629|ref|NP_390630.2| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|296333158|ref|ZP_06875611.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675336|ref|YP_003867008.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|321312279|ref|YP_004204566.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis BSn5]
 gi|229462859|sp|O34527|CYMR_BACSU RecName: Full=HTH-type transcriptional regulator CymR; AltName:
           Full=Cysteine metabolism repressor
 gi|225185257|emb|CAB14694.2| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|296149356|gb|EFG90252.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413580|gb|ADM38699.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320018553|gb|ADV93539.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           subtilis BSn5]
          Length = 138

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    D IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           +VL   ++E L 
Sbjct: 113 EVLDSTTLEDLA 124


>gi|293607996|ref|ZP_06690299.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|292828569|gb|EFF86931.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 182

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G RG
Sbjct: 4   ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ +
Sbjct: 64  GYLLARSAHEISFLDIVNAIEGEKPLFECQEVREKCAVFNNAPPDWATSGVCAVHAVMLQ 123

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  D L  +++  +   
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143


>gi|209964918|ref|YP_002297833.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209958384|gb|ACI99020.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 156

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A  +  +P  +++IA+   IS  +L ++   L K G+V++VRG
Sbjct: 1   MRLSTKGRYAVMAMVDLAKSSKGHPVALAEIADRQEISLSYLEQLFAKLRKGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             GG  L  PA+ + I D++ A +E      C A     C    + C    +  +  N  
Sbjct: 61  PGGGYLLASPAEAMRISDIILAVDEPIRATRCAAHSPAGCRANKTRCLTHDLWEELGNQI 120

Query: 119 FDVLTQYSIECLVRNR 134
              L+  S+  +V  R
Sbjct: 121 HLYLSSVSLADVVERR 136


>gi|39996739|ref|NP_952690.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39983620|gb|AAR35013.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
          Length = 136

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A I       IS+IAEA  + + FL KILQ   K GIV++ RG
Sbjct: 1   MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +IT+ +VV+A E       C       C     CG+  V RK      
Sbjct: 61  AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLL-GSGTCERDNICGVHPVWRKVQERVA 119

Query: 120 DVLTQYSIECLVR 132
           + L   ++E L  
Sbjct: 120 ETLDAVTLEELAA 132


>gi|56963349|ref|YP_175080.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909592|dbj|BAD64119.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 139

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1   MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A+ IT  D+++  E      E     +             +  K  +A  
Sbjct: 61  AYGGYMLAKDAEDITAGDIIRVLEGPISPVEVLEDEEP--------AKRDLWIKIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           +VL + ++  L  
Sbjct: 113 EVLDKTTLADLAN 125


>gi|295399330|ref|ZP_06809312.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110109|ref|YP_003988425.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294978796|gb|EFG54392.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215210|gb|ADP73814.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 138

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  DV++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLADHPAKITAGDVIRVLEGPISPVEELDEEEP--------AKRELWIRVRDAVE 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L +
Sbjct: 113 EVLDSTTLEDLAK 125


>gi|304320316|ref|YP_003853959.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
           HTCC2503]
 gi|303299218|gb|ADM08817.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
           HTCC2503]
          Length = 174

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++++  Y +R ++  A     D    I+ I+E   I + FL +IL  L + G++++ RG+
Sbjct: 23  ISQKAKYALRAMVLLARAHAEDEALIIADISERQNIPKKFLEQILLDLKRHGLLDSRRGK 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG  L RPADQIT  +V++  E       C +        DC    SC +  V  +  +
Sbjct: 83  NGGYMLLRPADQITFGEVLRIIEGPIAPLPCLSKMAYRKCEDCDGEKSCEIRRVFAEVAD 142

Query: 117 AFFDVLTQYSIECLVRNRS 135
           A   VL + +I   + +  
Sbjct: 143 ATRAVLDKTTIADAIADER 161


>gi|196228245|ref|ZP_03127112.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
 gi|196227648|gb|EDY22151.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
          Length = 209

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMY--CAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+KR +Y +R L+    A     P  +I ++ E   +   FL +IL  L  AG +ET 
Sbjct: 1   MKLSKRGEYALRALIDFGIAYELGRPLLKIGELVEKERLPVKFLEQILTQLRGAGYIETK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKA 114
           RG+ GG  L +P  QI++  V++  +       C +     +  CP    CGL  ++   
Sbjct: 61  RGKAGGYFLAKPPKQISLGQVIRLIDGPLAPISCVSVTAYERCSCPDEAHCGLRMLMLDV 120

Query: 115 LNAFFDVLTQYSIECLVR 132
            NA   +L +Y +  +V 
Sbjct: 121 RNAIARILDRYVLGDVVD 138


>gi|253578507|ref|ZP_04855779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850825|gb|EES78783.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 158

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ L+   +H++     +  IAE   IS  +L +++  L KAG+V++ RG
Sbjct: 1   MKLSTRARYGLKALIDLGLHSENEAISLQSIAERQDISTSYLEQLMAMLKKAGLVKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG +L +PAD+I++ +V++  E S   A C    +   C     C    V ++  ++ 
Sbjct: 61  AYGGYQLGKPADEISVGEVLRVLEGSLEAAACPGIENDGTCHGSDVCVAKLVWKRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + +    +  L+     + +
Sbjct: 121 TNAVDTLMLGQLIEESRRVHE 141


>gi|315281262|ref|ZP_07869928.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
 gi|313615086|gb|EFR88564.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
          Length = 138

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG VE+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQMD 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|328552565|gb|AEB23057.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens
           TA208]
 gi|328910965|gb|AEB62561.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens LL3]
          Length = 144

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A    +  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  LV+N+  I ++  +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLKS 144


>gi|332969189|gb|EGK08221.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           kingae ATCC 23330]
          Length = 149

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++   +  +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQSHAVKLNAISERQQISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + ADQI I  ++ A E+      C  S K +C     C   ++     +   
Sbjct: 61  PGGGYVLGKSADQINISQIIAAAEDRLDATLC--SGKANCQSGAPCLTHNLWENLNHTID 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L+  ++  L+  +  
Sbjct: 119 NYLSSVTLASLLEQQQP 135


>gi|226311480|ref|YP_002771374.1| transcriptional regulator of cysteine metabolism [Brevibacillus
           brevis NBRC 100599]
 gi|226094428|dbj|BAH42870.1| transcriptional regulator of cysteine metabolism [Brevibacillus
           brevis NBRC 100599]
          Length = 139

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D+I+  DV++  E      E FA  +             +  +  ++  
Sbjct: 61  AYGGYVLAKQPDEISAGDVIRVLEGPISPVE-FAEEEDPAK-------RFLWLRIRDSIS 112

Query: 120 DVLTQYSIECLV 131
            VL   S++ L+
Sbjct: 113 SVLDSTSLQDLI 124


>gi|46906881|ref|YP_013270.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47091594|ref|ZP_00229390.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|224498715|ref|ZP_03667064.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
 gi|226223260|ref|YP_002757367.1| hypothetical protein Lm4b_00657 [Listeria monocytogenes Clip81459]
 gi|254824091|ref|ZP_05229092.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|254828298|ref|ZP_05232985.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|254932089|ref|ZP_05265448.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|254994106|ref|ZP_05276296.1| hypothetical protein LmonocytoFSL_14839 [Listeria monocytogenes FSL
           J2-064]
 gi|255023288|ref|ZP_05295274.1| hypothetical protein LmonocyFSL_07190 [Listeria monocytogenes FSL
           J1-208]
 gi|255520380|ref|ZP_05387617.1| hypothetical protein LmonocFSL_03972 [Listeria monocytogenes FSL
           J1-175]
 gi|290892831|ref|ZP_06555822.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|46880147|gb|AAT03447.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019913|gb|EAL10650.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|225875722|emb|CAS04425.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258600690|gb|EEW14015.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|290557643|gb|EFD91166.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293583644|gb|EFF95676.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|293593322|gb|EFG01083.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|328467204|gb|EGF38284.1| hypothetical protein LM1816_00045 [Listeria monocytogenes 1816]
 gi|328475713|gb|EGF46459.1| hypothetical protein LM220_02615 [Listeria monocytogenes 220]
 gi|332311056|gb|EGJ24151.1| Rrf2 family transcriptional regulator [Listeria monocytogenes str.
           Scott A]
          Length = 138

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|317131673|ref|YP_004090987.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
 gi|315469652|gb|ADU26256.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
          Length = 143

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+R L+  A+H D     +  IA+   IS  +L ++   L KAG V +V+G
Sbjct: 1   MKLSTKGRYGLRALLDLAVHADGSHVSLYNIADRQQISVNYLEQVFSQLRKAGFVRSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L     ++TI  +++  E S  +A        + PL   C    V  +  ++  
Sbjct: 61  AQGGYALAMQPQEMTIGGILRVLEGSLHIAT--EETSGENPLQD-CIKKYVWDRINDSID 117

Query: 120 DVLTQYSIECLVRNRSS 136
            V+   ++  LV    S
Sbjct: 118 QVVDSITLGDLVEEYRS 134


>gi|329119447|ref|ZP_08248132.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464380|gb|EGF10680.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H      +++ I+E   IS  +L ++   L +AG+V+++RG
Sbjct: 21  MRLTTKGRFAVTAMLDLAMHAQKGAVKLNDISERQNISLSYLEQLFGKLRRAGLVDSIRG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A  I+I  ++ A E+      C  S K +C     C    +         
Sbjct: 81  PGGGYILAADARNISIAQIITAAEDKLDATLC--SGKTNCHNGAPCLTHDLWENLNRTIN 138

Query: 120 DVLTQYSIECLVRNRS 135
             L+  ++E ++  + 
Sbjct: 139 QYLSSVTLETVLSQKD 154


>gi|298505751|gb|ADI84474.1| transcriptional regulator, putative [Geobacter sulfurreducens
           KN400]
          Length = 137

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A I       IS+IAEA  + + FL KILQ   K GIV++ RG
Sbjct: 2   MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +IT+ +VV+A E       C       C     CG+  V RK      
Sbjct: 62  AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLG-SGTCERDNICGVHPVWRKVQERVA 120

Query: 120 DVLTQYSIECLVR 132
           + L   ++E L  
Sbjct: 121 ETLDAVTLEELAA 133


>gi|328472291|gb|EGF43161.1| transcriptional repressor NsrR [Vibrio parahaemolyticus 10329]
          Length = 141

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    +  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVEF---CHITPACRLKDKLAKAKRAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L + +IE L+ + S +  + 
Sbjct: 117 AELDECTIESLLSDNSELLILL 138


>gi|237808576|ref|YP_002893016.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
 gi|237500837|gb|ACQ93430.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
           9187]
          Length = 154

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R LM+ A +     + + +I+    IS   + K++  LV  G + +VRG
Sbjct: 1   MKLTTYTDYGLRTLMFMACLSPGARSSVVEISNYYDISRNHMVKVVVQLVSLGYLSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L R    I I  V++  E +    +C       C LV  C LT+ L+  + AF 
Sbjct: 61  KNGGITLARLPRDIRIGQVIRDLESNLNGVDC---GSPGCKLVPVCRLTNALKVGMEAFL 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             + ++++  LV N   I  I  
Sbjct: 118 AAMDEFTLSDLVNNADQIIAILQ 140


>gi|315186439|gb|EFU20199.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6578]
          Length = 155

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  Y IR ++  A+  +  P  I +IAE   IS  FL +I   L K GI+++VRG
Sbjct: 1   MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKVGIIDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115
             GG  L RP + ITI D+  A +E   +  C           C     C L  V ++  
Sbjct: 61  PGGGFVLSRPLESITIKDIFDAVDEGLGITPCTEEEGKSGPELCEKAERCLLYEVWKETA 120

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +         +++ L+     
Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141


>gi|331694605|ref|YP_004330844.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949294|gb|AEA22991.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 148

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T   DY +RVL+Y  +       +  IA A  IS   L K++  L  AG+VET RGR
Sbjct: 1   MRHTNHADYALRVLLYLRVAPGRRGSVGDIATAHHISRHHLDKVVTGLAAAGLVETARGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+ ++++A E  + V EC    +  C + G CG  +V  +AL+A+F 
Sbjct: 61  GGGVRLVRDPASITLGEIMRAMENDYAVVECLGPARF-CRVAGVCGARNVFSRALDAYFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL   ++E +  N   ++    
Sbjct: 120 VLDDATLEEIADNDLGLRGALG 141


>gi|308172925|ref|YP_003919630.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
           7]
 gi|307605789|emb|CBI42160.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
           7]
          Length = 144

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +RVL++ A    +  + I +IA+   IS+  L K++  L + G VET+RG
Sbjct: 1   MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL    + I I +VV+ TE+ F + ECF S K  C +  +C L ++L +AL A+ 
Sbjct: 61  RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
            VL +Y++  LV+N+  I ++  +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144


>gi|327439663|dbj|BAK16028.1| predicted transcriptional regulator [Solibacillus silvestris
           StLB046]
          Length = 139

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A H  + P  + QIA    +SE +L +++ PL  AG+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELAKHYGEGPIPLRQIAADKDLSEAYLEQLVSPLRNAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++I+  DV++  E      E   + +             +  +  +A  
Sbjct: 61  AYGGYMLAHKPNEISAADVIRVLEGPIQPVEGIENEEAP--------QRELWMRIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +I+ L +
Sbjct: 113 NVLDTTTIDDLAK 125


>gi|84683690|ref|ZP_01011593.1| Transcriptional regulator [Maritimibacter alkaliphilus HTCC2654]
 gi|84668433|gb|EAQ14900.1| Transcriptional regulator [Rhodobacterales bacterium HTCC2654]
          Length = 147

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 73/128 (57%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+C ++ D   R S+IAEA   S   L +++  L + G VET RGR GG+ L R  + I+
Sbjct: 1   MFCGVNTDQTVRSSEIAEATNASGNHLSQVIHKLQQFGYVETRRGRGGGLMLARKPEAIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I  + +  E      ECF +   +CPL+ +C L + ++KAL+AF+  L + ++  LV++ 
Sbjct: 61  IGALFRDFEAEVPFTECFDAANNNCPLIETCRLNTYIKKALDAFYSELDEVTLADLVKDN 120

Query: 135 SSIKKIFN 142
             + ++ +
Sbjct: 121 CGLIELLD 128


>gi|167747110|ref|ZP_02419237.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
 gi|167654070|gb|EDR98199.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
          Length = 150

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  Y +R+L   A HN      +  +++   IS  +L +I++ L   G ++++RG 
Sbjct: 7   KISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRGP 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG +L +   + TI DV++ TE S     C       C     C    +         D
Sbjct: 67  RGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVRD 126

Query: 121 VLTQYSIECLVRNRSS 136
            L   +I+ ++   +S
Sbjct: 127 YLGSVTIQDILDRAAS 142


>gi|328544253|ref|YP_004304362.1| transcriptional regulator [polymorphum gilvum SL003B-26A1]
 gi|326413995|gb|ADZ71058.1| Putative transcriptional regulator [Polymorphum gilvum SL003B-26A1]
          Length = 155

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 74/142 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT RT+  +R LM+CA+++    R ++IA AC  SE  + +++  L + G + T RGR
Sbjct: 1   MRLTMRTNLAMRTLMFCAVNSARTVRKAEIARACNASENHIAQVIHLLSQKGYLRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    ++I +  V ++ E     AECF      CPL  +C L   +  A+ AF+ 
Sbjct: 61  NGGIRLGMAMEEINVGTVFRSFEADVPFAECFQGVDNRCPLTAACRLRIAIVGAVGAFYA 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L   S+  LV     + +I  
Sbjct: 121 ALDGLSLADLVAGNRELHRILT 142


>gi|126729963|ref|ZP_01745775.1| rrf2 family protein [Sagittula stellata E-37]
 gi|126709343|gb|EBA08397.1| rrf2 family protein [Sagittula stellata E-37]
          Length = 161

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 74/131 (56%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +RVLMYCA H +      +IA+ C  SE  L +++  L + G + T RGR GG+ L RPA
Sbjct: 1   MRVLMYCAAHTERLVTKHEIAQVCNASENHLAQVINQLAQLGFLHTQRGRNGGLELARPA 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            +I I DV +  E+   +AECFA     CPL  +C L  +L KA N+F++ L   +++ L
Sbjct: 61  SEIVIGDVFRHLEQPVPLAECFADVDNTCPLTEACRLRDLLTKAANSFYETLDPITLDAL 120

Query: 131 VRNRSSIKKIF 141
           V +   +  I 
Sbjct: 121 VCDNVPLLDII 131


>gi|302879682|ref|YP_003848246.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302582471|gb|ADL56482.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 132

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D  +R L+     N  P  I+++AE C IS+  L K++  LV A +V + RGR
Sbjct: 1   MQLTVSSDSALRTLICLGKKN-APVTIAEVAEQCQISKSTLMKVVMTLVGANLVVSERGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L + A  I++  VV+  E S  + EC       CPL+  C L  VL  A   FF 
Sbjct: 60  NGGISLAQDAKDISVGSVVRLMENSLALVECMKDGTSTCPLLPKCRLKHVLYTAQENFFS 119

Query: 121 VLTQYSIECLVRN 133
            L   S+  L+R+
Sbjct: 120 TLDNTSLADLLRD 132


>gi|295111229|emb|CBL27979.1| transcriptional regulator, BadM/Rrf2 family [Synergistetes
           bacterium SGP1]
          Length = 161

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+  T YG+R L    +   D P  +S IA    I   +L ++   L ++ I+++VRG
Sbjct: 1   MKLSTTTRYGLRALTDLCVQQQDAPVSVSDIARRQSIPVNYLEQLFAKLRRSNILKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA +IT+ +V+ A  E      C +     C    +C    +  +   +  
Sbjct: 61  AQGGYLLARPAKEITLSEVIAALGEEILFGSCQSEKG--CANAATCSTFDLWNRLRISID 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
            +L   ++E L +   +++
Sbjct: 119 GILDGTTLEDLAKKDRTLR 137


>gi|254853166|ref|ZP_05242514.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|300764439|ref|ZP_07074432.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|258606518|gb|EEW19126.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|300514793|gb|EFK41847.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
          Length = 138

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLVGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|304404495|ref|ZP_07386156.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346302|gb|EFM12135.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 133

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y  A   + P  + Q+AE   +S  +L KIL  LVKAG+VE+  G
Sbjct: 1   MKYSKATNYALHTMLYLMAATPNRPIGVQQLAERQDVSSTYLSKILTKLVKAGMVESASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  +QI+ LD++ A E +  + +C   H   CP      +  V+ +A     
Sbjct: 61  ANGGYRLKRDWEQISFLDIIHAIEGTASIFDCSFDHGPQCP------IQRVVLEAEQQME 114

Query: 120 DVLTQYSIECLVR 132
             L+  ++  L +
Sbjct: 115 QHLSNQTLAALAQ 127


>gi|269791825|ref|YP_003316729.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099460|gb|ACZ18447.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 146

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++T Y +R L   ++     P +I++IAEA  I   FL  IL  L   G VE++RGR 
Sbjct: 6   VNQKTQYALRALYELSVQYRAGPVKIARIAEAQRIPRKFLEVILSELKAMGYVESLRGRE 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP  +I+I DV++  +      +C    +  C L G C    +  +A  A  +V
Sbjct: 66  GGYVLARPPWEISIGDVIRDVQGPLSPVDCLI-GRGGCRLSGQCSFRPLWARAARALEEV 124

Query: 122 LTQYSIECLVR 132
               + + LV 
Sbjct: 125 YDGTTFQDLVD 135


>gi|291614714|ref|YP_003524871.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
           lithotrophicus ES-1]
 gi|291584826|gb|ADE12484.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
           lithotrophicus ES-1]
          Length = 160

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+E   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRFAVTAMVDLAMRGGKGPVTLAGISERQKISLSYLEQLFGKLRRNNVVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA++I+++D++ A +E+    +C    + +C     C    +      A  
Sbjct: 61  PGGGYCLARPANKISMVDIITAVDEALDATQC--GTRGNCADGKPCLTHDLWFGLNEAIH 118

Query: 120 DVLTQYSIECLVRNR 134
           + L++ +++ LV  +
Sbjct: 119 EYLSKINLQQLVDGQ 133


>gi|239827836|ref|YP_002950460.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. WCH70]
 gi|239808129|gb|ACS25194.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
          Length = 138

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  DV++  E      E     +             +  +  NA  
Sbjct: 61  AYGGYVLADHPAKITAGDVIRVLEGPITPVEELDEEEP--------AKRELWIRIRNAVE 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L +
Sbjct: 113 EVLDNTTLEDLAK 125


>gi|254786630|ref|YP_003074059.1| iron-sulfur cluster assembly transcription factor IscR
           [Teredinibacter turnerae T7901]
 gi|237686389|gb|ACR13653.1| iron-sulfur cluster assembly transcription factor IscR
           [Teredinibacter turnerae T7901]
          Length = 164

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ I++   IS  +L ++   L +  +V +VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQRGPVSLADISKRQGISLSYLEQLFAKLRQNALVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A ++ +  +V A  ES     C      +C     C    +     +   
Sbjct: 61  PGGGYKLSREASELFVAQIVDAVNESIDATSC--GGAGNCNQGDVCLTHYLWCDLSDQIH 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L+  S++ LV +R  +++
Sbjct: 119 TFLSGISLQSLV-DRHDVQQ 137


>gi|331699002|ref|YP_004335241.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953691|gb|AEA27388.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 148

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+  D+ +RVLM+  +       I  IA A  +S   L K+++ +  AG+VET RGR
Sbjct: 1   MRHTQHADFALRVLMFLRVAPGRRGSIGDIALAHRVSRNHLDKVVRRMSTAGLVETSRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R    IT+ DV+++ E+ F V EC    +  C + G CG  +V   AL+++F 
Sbjct: 61  GGGVRLVRDPASITVGDVIRSMEDDFAVVECLGPARY-CRVAGVCGARTVFAAALDSYFA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL + +++ +  N   ++    
Sbjct: 120 VLDRATLDDVAANDGGLRGALG 141


>gi|300087504|ref|YP_003758026.1| BadM/Rrf2 family transcriptional regulator [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527237|gb|ADJ25705.1| transcriptional regulator, BadM/Rrf2 family [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 147

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG R L+  A +  D    I  IA    IS  +L  ++ PLV A ++++VRG
Sbjct: 1   MKLSTRARYGTRALLDLAQNYGDQVIPIKDIARRQQISLSYLEHLIGPLVDARLIQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG++L +  + I + +VV   E      EC  + +  C     C    +      A  
Sbjct: 61  AKGGLKLAKSPEAIKLSEVVSLLEGPIEPVECIHNPE-KCDRSLFCATRDIWDDMGRAIT 119

Query: 120 DVLTQYSIECLVRNRSS 136
           +VL Q ++  LV  + +
Sbjct: 120 EVLGQTTLADLVSRQQA 136


>gi|262279220|ref|ZP_06057005.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259571|gb|EEY78304.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 182

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G RG
Sbjct: 4   ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G  L R A +I+ LD+V A E    + EC         F     D    G C + +V+ +
Sbjct: 64  GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNHAPPDWATSGVCAVHAVMLQ 123

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  D L  +++  +   
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143


>gi|260429630|ref|ZP_05783607.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
 gi|260420253|gb|EEX13506.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
          Length = 150

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY +RV +Y   H D    IS+I  A  +S+  L K++Q LV+ G +++ RGR
Sbjct: 1   MHLSKFTDYALRVCLYLGAHQDRVVPISEITRAHGLSQSNLMKVVQQLVEGGFLKSTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L RPA +I + +V +  E    + +C       C L+G+CGL   L +A NAF+ 
Sbjct: 61  SGGVTLARPAAEIRVGEVARFMEGDSGLVDC-----STCILIGACGLVRGLNEAKNAFYQ 115

Query: 121 VLTQYSIECLV 131
            L + S+   V
Sbjct: 116 SLDRSSLADAV 126


>gi|332702697|ref|ZP_08422785.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552846|gb|EGJ49890.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 148

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YG R+++  A++ +    R+S +A    +S  +L K+++ L KAG V + RG
Sbjct: 1   MRLSTRSRYGARMVLDMALYGNAGLVRLSDLAVRLDVSVKYLEKLVRELQKAGYVYSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I++ +VV+  E    +  C    +I C  V  C +  V   A  A F
Sbjct: 61  PTGGHGLARDVAEISVGEVVRLLEGDHALTMCAQEDQI-CRHVDDCIMRKVWTDASEAMF 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   +   LVR     +
Sbjct: 120 AALDAVTFADLVREAKDKQ 138


>gi|262370584|ref|ZP_06063909.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262314384|gb|EEY95426.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 149

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY +     P+ I+++A+A  +SE  L KI+  + K   + T RGR
Sbjct: 1   MQLNKFTDYALRILMYVSQPKALPHTIAELAQALQVSENHLMKIVHFMAKQQWIITARGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL      + + ++V+  +    + EC   +   C L  +CGL  +L +AL+ F+ 
Sbjct: 61  GGGIRLNPETLHLRLGEIVRVLQADQNIVEC---NTPPCVLRSNCGLKGILDQALDQFYH 117

Query: 121 VLTQYSIECLV 131
            L QY++  ++
Sbjct: 118 SLDQYTLADVL 128


>gi|304311801|ref|YP_003811399.1| Regulator of the isc operon [gamma proteobacterium HdN1]
 gi|301797534|emb|CBL45754.1| Regulator of the isc operon [gamma proteobacterium HdN1]
          Length = 166

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  +++I+E   IS  +L ++   + +  +V++VRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHTGKGPVSLAEISERQGISISYLEQLFAKMRRKDLVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I + +++ A +ES     C      DC    +C    + ++      
Sbjct: 61  PGGGYLLSRDGSTICVAEIIDAVDESVDATRCQGLG--DCQNGETCLTHDLWQELSIEIH 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   S++ LV +RS I++I
Sbjct: 119 RFLGGISLKSLV-SRSQIQQI 138


>gi|296313979|ref|ZP_06863920.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           polysaccharea ATCC 43768]
 gi|296839409|gb|EFH23347.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           polysaccharea ATCC 43768]
          Length = 149

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L   +++ ++  ++
Sbjct: 119 DYLGSVTLQSIIEQKT 134


>gi|296135927|ref|YP_003643169.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|295796049|gb|ADG30839.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 154

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 64/129 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD+G+R LM  A + D      ++A+   IS   L K+LQ L   G V+  RG 
Sbjct: 1   MKLTQFTDFGLRALMVLAENPDQSLNSKELAKILDISREHLVKVLQRLAAGGYVQNQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL + A +I + +VV+  E+   + EC       C L   C L  +L  A  AF+ 
Sbjct: 61  NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120

Query: 121 VLTQYSIEC 129
            L   ++  
Sbjct: 121 RLNTSTLAD 129


>gi|242278840|ref|YP_002990969.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242121734|gb|ACS79430.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 143

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ YG R+L+  A+H++  P      A    IS  +L KIL+ L ++G ++  RG
Sbjct: 1   MKLTTRSRYGARLLLDIALHSENGPVPSKDSARRENISLKYLEKILKILKESGYIKGKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++I++  + +A E    + +C       C     C   S+   A  A +
Sbjct: 61  PNGGNVLTMAPEEISLGKLTEALEGEDKILDC-DGDMTTCTRAAVCLRRSIWDDANQAMY 119

Query: 120 DVLTQYSIECLVRN 133
            +L  Y++  L+++
Sbjct: 120 KMLDSYTLADLIKD 133


>gi|163802753|ref|ZP_02196643.1| hypothetical protein 1103602000569_AND4_12699 [Vibrio sp. AND4]
 gi|159173460|gb|EDP58282.1| hypothetical protein AND4_12699 [Vibrio sp. AND4]
          Length = 141

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+  E    +  C       C +  +C L   L +A  AF 
Sbjct: 61  KNGGIRLLKAPQEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAQAKMAFM 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L   +IE L+R+ S +  +  
Sbjct: 117 AELDGCTIEELLRDNSELLILLT 139


>gi|91227445|ref|ZP_01261809.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
 gi|91188595|gb|EAS74886.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
          Length = 141

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIFLASLPEDELTSITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    +  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L   +IE L+ + S +  + 
Sbjct: 117 AELDDCTIESLLSDNSELLILL 138


>gi|296112834|ref|YP_003626772.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           RH4]
 gi|295920528|gb|ADG60879.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           RH4]
 gi|326561076|gb|EGE11441.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           7169]
 gi|326561502|gb|EGE11846.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           46P47B1]
 gi|326565370|gb|EGE15548.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566701|gb|EGE16840.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           103P14B1]
 gi|326567535|gb|EGE17650.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           BC1]
 gi|326569382|gb|EGE19442.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           BC8]
 gi|326571418|gb|EGE21433.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           BC7]
 gi|326575299|gb|EGE25227.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           CO72]
 gi|326576615|gb|EGE26522.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           101P30B1]
 gi|326577518|gb|EGE27398.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
           O35E]
          Length = 168

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  A+          +S IA+   IS  +L ++   L K G+V + 
Sbjct: 1   MRLTTRGRYAVTALLDLAVQESRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L +P + I I+ ++ A +ES    +C    K +C     C    +     + 
Sbjct: 61  RGALGGYHLAKPLEDIDIMSIITAVDESINATQC--GGKGNCQDGAMCLTHDLWHNLSHH 118

Query: 118 FFDVLTQYSIECLVRNRS 135
               L + ++  L+  ++
Sbjct: 119 IESYLKKVTLAQLLETKN 136


>gi|311031536|ref|ZP_07709626.1| transcription repressor [Bacillus sp. m3-13]
          Length = 138

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A +  + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKNVGEGPLSLKTIAQTHDLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYILADEPEKITAGDIIRVLEGPISPVEVIEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           DVL   +++ L  
Sbjct: 113 DVLDSTTLDDLAN 125


>gi|254449219|ref|ZP_05062668.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium HTCC5015]
 gi|198261196|gb|EDY85492.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium HTCC5015]
          Length = 158

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H    P  ++ IAE   IS  +L ++   L K G+V + RG
Sbjct: 1   MKLTTKGRYAVTAMLDLALHCEQGPVALADIAERQAISLSYLEQLFGRLRKRGLVSSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A  I++  V+ A +ES     C       C     C    +         
Sbjct: 61  PGGGYALNAEAGAISVSAVIDAVDESVDATSC--GGASSCQGSIRCLTHDLWTDLSQQIQ 118

Query: 120 DVLTQYSIECLVRNR 134
             L   S++ LV  R
Sbjct: 119 GFLDSISLQDLVDRR 133


>gi|149176060|ref|ZP_01854677.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
 gi|148845214|gb|EDL59560.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
          Length = 139

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A  +D    ++ +AE   IS   + K++  L + G + +VRG 
Sbjct: 1   MQLTMQTDYALRTLMYLASQDDR-ATVANVAELFQISSHHVAKVVNQLSRLGYIRSVRGM 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L  P ++I + DV++  E +  + EC  +  + C +   C L  VL +A     +
Sbjct: 60  GGGIELAVPLEKIRLGDVIERFEGNLHLLECVGTENV-CIIQPFCKLKGVLAEAERVQLE 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L   ++  +  +   +K I
Sbjct: 119 YLNSVTLADVAPSHRQLKSI 138


>gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
           DSM 6192]
 gi|306532678|gb|ADN02212.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
           DSM 6192]
          Length = 155

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  Y IR ++  A+  +  P  I +IAE   IS  FL +I   L KAGI+++VRG
Sbjct: 1   MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKAGIIDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115
             GG  + RP + ITI D+  A +E   +  C           C     C L  V ++  
Sbjct: 61  PGGGFLISRPLESITIKDIFDAVDEGLGITPCTEEEGKSGTELCEKAERCLLYEVWKETA 120

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +         +++ L+     
Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141


>gi|325123611|gb|ADY83134.1| hypothetical protein BDGL_002548 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 147

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG--IVETVR 58
           M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K     + T+R
Sbjct: 1   MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKHKQEWIITIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+RL   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F
Sbjct: 61  GKGGGIRLNPEALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L QY++  +++   S
Sbjct: 118 YQSLDQYTLGEVLQQSKS 135


>gi|52081231|ref|YP_080022.1| negative regulator of riboflavin kinase [Bacillus licheniformis
           ATCC 14580]
 gi|52786611|ref|YP_092440.1| YrzC [Bacillus licheniformis ATCC 14580]
 gi|319644802|ref|ZP_07999035.1| YrzC protein [Bacillus sp. BT1B_CT2]
 gi|52004442|gb|AAU24384.1| negative regulator of riboflavin kinase [Bacillus licheniformis
           ATCC 14580]
 gi|52349113|gb|AAU41747.1| YrzC [Bacillus licheniformis ATCC 14580]
 gi|317392611|gb|EFV73405.1| YrzC protein [Bacillus sp. BT1B_CT2]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  D+++  E      E   + +             +  K  +A  
Sbjct: 61  AYGGYILGEEPAAITAGDIIRVLEGPISPVEVLENEEP--------AKRELWIKIRDAVK 112

Query: 120 DVLTQYSIECLV 131
           +VL   ++E L 
Sbjct: 113 EVLDSTTLEDLA 124


>gi|144897308|emb|CAM74172.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 148

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A H +D    I+ IAEA  I + FL  IL  L   G + + +G+ 
Sbjct: 2   LSSKAKYGLKAMVYLARHADDGSVLIADIAEAESIPKKFLDAILLELKNRGYLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +PA QI + D+V+  +      +C +        DC     C + +V+ +  +A
Sbjct: 62  GGYSLAKPAQQIMVGDIVRVLDGPLAPVQCVSRTAYRRCDDCRDEAGCAVRAVMGEVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L   ++  + 
Sbjct: 122 IAAILDNTTLADMA 135


>gi|313610249|gb|EFR85521.1| putative transcriptional regulator [Listeria monocytogenes FSL
           F2-208]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASGISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|167465258|ref|ZP_02330347.1| possible transcriptional regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 139

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA+QIT   +++  E      + F                 +  +  ++  
Sbjct: 61  AYGGYILSRPAEQITTGQIIRVLEGPISPVD-FEEEDDPAK-------RDLWIRIRDSIA 112

Query: 120 DVLTQYSIECLV 131
            VL   ++  L+
Sbjct: 113 QVLDSTTLASLI 124


>gi|116872023|ref|YP_848804.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740901|emb|CAK20021.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 138

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG VE+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+  A     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESKPHCLIGEVMNNAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|159186104|ref|NP_356355.2| hypothetical protein Atu4299 [Agrobacterium tumefaciens str. C58]
 gi|159141238|gb|AAK89140.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 179

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T   +YG+  L++ A     P     +AE   IS  FL KI   L KAGIV    G +
Sbjct: 3   QMTVGVEYGLHCLLWLASSPGAPLSSRDLAELQGISPSFLAKIFPKLEKAGIVSASEGIK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG  L RP   IT+L+VV   E    + +C         F          G C + +V+ 
Sbjct: 63  GGYLLARPPGDITVLEVVDTIEGRKPLFDCQEIRGRCAVFRQRPPSWATKGVCAIHAVML 122

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +A  A  D L   ++  +  +
Sbjct: 123 RAEKAMRDSLASQTLADIAGD 143


>gi|89900669|ref|YP_523140.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345406|gb|ABD69609.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 169

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 76/136 (55%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVLM+CA++ +    I+++AE+  IS+  L K++  L + G+++T RGR
Sbjct: 1   MRLTDYTDYTLRVLMFCALNPERSVTIAELAESHAISKNHLMKVVNDLARQGLLQTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +PA  I I DVV+ TE  F + ECF      C L   C L  V   A   F  
Sbjct: 61  GGGLRLLKPAADIRIGDVVRQTETDFRLVECFDPGHNTCTLTAQCQLKQVFWTAKQNFLA 120

Query: 121 VLTQYSIECLVRNRSS 136
            L + ++  +   R +
Sbjct: 121 ELDKVTLADVTCTRPA 136


>gi|291288301|ref|YP_003505117.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885461|gb|ADD69161.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 143

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T ++ Y IR +    +      P  ++QIAE   IS  +L +I   L K+GIVE  R
Sbjct: 1   MKITTKSRYAIRSIFALVLMGGDTKPVALTQIAEHEDISRKYLEQIFIKLKKSGIVEGSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R    I + +V+ A +    +++C       C    SCG+  +        
Sbjct: 61  GAQGGYVLARNPSDIRLKEVIYAMDGPVNISDCTQEE--SCDNFSSCGINWLWSGLKKTV 118

Query: 119 FDVLTQYSIECL 130
            D L   +I+ L
Sbjct: 119 DDYLDNITIQDL 130


>gi|23099471|ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831]
 gi|22777700|dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 139

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A++    P  +  IA+   +SE +L ++  PL  AG+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT  DV++  E    + E     K            S+     +A  
Sbjct: 61  AYGGYMLSREPKSITASDVLRVLEGPLTIVEGMEEEKP--------AQQSLWLSIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q +++ LV + + 
Sbjct: 113 DVLDQTTLQDLVDHEND 129


>gi|282882782|ref|ZP_06291389.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
           315-B]
 gi|300813432|ref|ZP_07093777.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|281297443|gb|EFA89932.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
           315-B]
 gi|300512449|gb|EFK39604.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 131

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   + ++   P  +  IA+   +SE +L ++   L K G+V +VRG
Sbjct: 1   MKLSTKGRYGLMAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  ++I I D++ A E    ++ C  + +++C  +  C    +L++  +   
Sbjct: 61  AGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRME 120

Query: 120 DVLTQYSIECL 130
           +V+   ++  +
Sbjct: 121 EVMDSLTLADM 131


>gi|114331239|ref|YP_747461.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
           eutropha C91]
 gi|114308253|gb|ABI59496.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
           C91]
          Length = 155

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  AI H   P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDIAIRHGGGPVALADISERQRISLSYLEQLFSKLRQRKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D++++ D++ A +E     +C    K +C     C    +  K     F
Sbjct: 61  PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWTKLNEIIF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   ++E LV  +S 
Sbjct: 119 DYLGNVTLERLVEEQSQ 135


>gi|209967102|ref|YP_002300017.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209960568|gb|ACJ01205.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 156

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L++R  Y +R  ++ A     +   RI+ IA A  I   FL  IL  L KAG++++VRGR
Sbjct: 8   LSQRCKYALRAAVHLAGLSEQEGCARIADIAAAENIPHKFLEAILLDLRKAGLLKSVRGR 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG RL +P + +++ D+++  E +     C +        DC     C +   + KA +
Sbjct: 68  DGGYRLAKPPEHVSMGDIIRVVEGTIAPIRCASRNRFEPCEDCGNPDECVIRWAMVKARD 127

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           A  +VL + ++    R R ++    +
Sbjct: 128 AMAEVLDRCTLAEAARRRRTLGTPLD 153


>gi|281418573|ref|ZP_06249592.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|281407657|gb|EFB37916.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
          Length = 147

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ +M  A+++      +  IAE   ISE +L ++   L KA IV++++G
Sbjct: 1   MKMSTKGRYGLQAMMDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L      IT+  +++  E +  V +       +      C    V  K   +  
Sbjct: 61  AQGGYVLADDPSNITVGKILRTLEGNLNVVD-IDDRDSEVSKEEKCINEFVWNKINKSID 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
            V+   ++  L+R    ++ 
Sbjct: 120 KVVDNITLGDLLREYQKLED 139


>gi|144898377|emb|CAM75241.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 140

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L+Y ++  +  + + +I+E   IS   L KI++ L + G + TVRG+
Sbjct: 1   MKITQFTDYSLRLLIYLSMRREGVSTVREISEFYSISSEHLKKIVRRLSELGHIRTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R  DQI +  +++ +E +  +  C  S    CP+ G C L SV+  A +AF  
Sbjct: 61  HGGLMLAREPDQINLGALLRQSE-NLNLVPCHDSGDT-CPIFG-CKLRSVIEDARDAFLA 117

Query: 121 VLTQYSIECL 130
                ++  +
Sbjct: 118 AFDGKTLADI 127


>gi|262393041|ref|YP_003284895.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
 gi|269967699|ref|ZP_06181748.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
 gi|262336635|gb|ACY50430.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
 gi|269827677|gb|EEZ81962.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
          Length = 141

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L++ A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIFLASLPEDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +PA +IT+  VV+  E    +  C       C +  +C L   L KA +AF 
Sbjct: 61  KNGGIRLMKPASEITVGGVVRDLE-PLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L   +IE L+ + S +  + 
Sbjct: 117 AELDDCTIESLLSDNSELLILL 138


>gi|264678558|ref|YP_003278465.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Comamonas testosteroni CNB-2]
 gi|262209071|gb|ACY33169.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
           CNB-2]
          Length = 148

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           TDY +R+LM+ A   +    IS++A+A  ISE  L K+   L   G +ETVRG+ GG+RL
Sbjct: 2   TDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGKGGGMRL 61

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            R   QI I  V++  E  F + ECF +    C L G C L  +L+ AL++F   L  ++
Sbjct: 62  AREPQQIHIGTVIRGLESDFTLVECFGNDN-RCTLTGDCRLAGMLQGALHSFMAHLDGFT 120

Query: 127 IECLV 131
           +  L+
Sbjct: 121 LADLI 125


>gi|294637705|ref|ZP_06715982.1| iron-sulfur cluster assembly transcription factor IscR
           [Edwardsiella tarda ATCC 23685]
 gi|291089135|gb|EFE21696.1| iron-sulfur cluster assembly transcription factor IscR
           [Edwardsiella tarda ATCC 23685]
          Length = 177

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 13  MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A +ES     C             C   ++ R       
Sbjct: 73  PGGGYLLGKDAADIAVGAVITAVDESVDATRCQGKGGCQ--GGTRCLTHALWRDLSERIS 130

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   S+  LV N+  +
Sbjct: 131 GFLNNISLAELVNNQEVL 148


>gi|257455232|ref|ZP_05620467.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
           aerosaccus SK60]
 gi|257447194|gb|EEV22202.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
           aerosaccus SK60]
          Length = 204

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  A+     +    +S IA+   IS  +L ++   L K G+V + 
Sbjct: 1   MRLTTRGRYAVTALLDLALQEQKHELAVSLSDIAKRQEISISYLEQLFSKLRKKGLVVST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  + +P ++I+I+ ++ A +ES     C    K +C     C    +       
Sbjct: 61  RGASGGYHIAKPINEISIMSIISAVDESVDARAC--EGKGNCQDGAMCLTHDLWNGLSEQ 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
             + L+  +++ L+ NR  I++I
Sbjct: 119 IENYLSTVTLDTLI-NRQIIREI 140


>gi|15613822|ref|NP_242125.1| hypothetical protein BH1259 [Bacillus halodurans C-125]
 gi|10173875|dbj|BAB04978.1| BH1259 [Bacillus halodurans C-125]
          Length = 139

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IA+   +SE +L +++ PL  A +V++VRG
Sbjct: 1   MKISTKGRYGLTIMMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A +IT  D+++  E      E   + +             +  K  +A  
Sbjct: 61  AYGGYMLAKEASEITAGDIIRVLEGPISPVEVMENEEP--------AKRDLWIKIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L  
Sbjct: 113 EVLDSTTLEDLAN 125


>gi|217967652|ref|YP_002353158.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
           DSM 6724]
 gi|217336751|gb|ACK42544.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum
           DSM 6724]
          Length = 138

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  R+ YG+R L+Y A +   + P  + +IAEA  I   +L +I++ L + G V    
Sbjct: 1   MKLPTRSRYGLRALIYIAKNQKEENPVSVRKIAEAEEIPLRYLERIMRILSQKGYVRAEV 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + I ILDVV+A E    + +C   H I C  +  C    +  +   + 
Sbjct: 61  GAEGGYYLSMLPENIKILDVVEALEGRINLVDCL--HGIKCKRMAYCPTRPLWMEMTKSL 118

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            + L +Y++   +R    IK
Sbjct: 119 KETLAKYTLADFLREEEKIK 138


>gi|260575577|ref|ZP_05843575.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259022220|gb|EEW25518.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 130

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 73/127 (57%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+CA++     R   +A+AC  SE  L +++  L + G + TVRGR GG+ L RP D+IT
Sbjct: 1   MFCAVNPGKVVRKQDVAQACNASENHLAQVIHLLAQKGFLHTVRGRSGGLMLGRPVDEIT 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +V +A E +    ECF+ H+  CPL+ SC L   L KAL AF+  L   ++  +VR  
Sbjct: 61  VGEVFRAFEATLPFTECFSQHENSCPLIDSCRLKCALVKALAAFYATLDALTLRDMVREN 120

Query: 135 SSIKKIF 141
             ++ + 
Sbjct: 121 GDLEGLL 127


>gi|114765192|ref|ZP_01444336.1| rrf2 family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542467|gb|EAU45494.1| rrf2 family protein [Roseovarius sp. HTCC2601]
          Length = 145

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 69/127 (54%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M+CA +       S+IA+ C  SE  L +++  L + G + T RGR GG+ L RPA+QI 
Sbjct: 1   MHCAANTGRLVTKSEIAKRCNASENHLAQVINQLAQLGYLHTQRGRNGGLELSRPAEQIR 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           I DV +A E    +AECFA     CPL  +C L   L  A NAF+  L   +++ L+ + 
Sbjct: 61  IGDVFRALEAPVPLAECFADVDNTCPLTEACRLKIALSDAANAFYATLDPITLDTLICDN 120

Query: 135 SSIKKIF 141
           + +  I 
Sbjct: 121 APLMDIL 127


>gi|313902381|ref|ZP_07835784.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467312|gb|EFR62823.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
           subterraneus DSM 13965]
          Length = 141

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R +   A      P  + ++A+A  + E +L +++ PL K G+V++VRG
Sbjct: 1   MQLSTRGRYGVRAMYELARRYGQGPVPLREVADAQQLPENYLEQLMAPLRKGGLVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   QIT+ D+V+  +                P V       V  +   A  
Sbjct: 61  AQGGYVLARDPAQITVADIVRLLDGPIGPET--DQEATGTPSVAD----PVWEEVRRAIT 114

Query: 120 DVLTQYSIECLVRNRSSIKK 139
            VL   ++  L R     ++
Sbjct: 115 GVLEGTTLADLCRQAEERQR 134


>gi|328948431|ref|YP_004365768.1| BadM/Rrf2 family transcriptional regulator [Treponema
           succinifaciens DSM 2489]
 gi|328448755|gb|AEB14471.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           succinifaciens DSM 2489]
          Length = 142

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  Y +RV++    H  D    ++ IAE   +S  +L  I+  LVKAG+VE +RG
Sbjct: 1   MLISTRGRYALRVIIELCSHGKDEFVPLNVIAENQDVSLKYLESIVALLVKAGLVEGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG RL + AD+ ++ +++K TE +     C   +   CP    C    +  K      
Sbjct: 61  KKGGYRLTKDADEYSVGEILKLTEGTLAPVTCLEENAETCPRSAECKTLPMWEKLDTIIS 120

Query: 120 DVLTQYSIECLVRNRS 135
           + L    I  L++  S
Sbjct: 121 NYLYSVKISDLLKPES 136


>gi|90407535|ref|ZP_01215717.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
 gi|90311345|gb|EAS39448.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
          Length = 149

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDYG+R L+Y A +       IS +A    +S   + K++  L K G ++ VRG
Sbjct: 1   MQLTTFTDYGLRTLIYLAILPKGELADISSVANIYNVSRNHMVKVISKLSKLGYIDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL   A +I + DV++  E S  +  C A     C +VG+C L  VL  A NAF 
Sbjct: 61  KNGGIRLGIDAHKIFLGDVIQNME-SMNIVNCNAGF---CHIVGACQLKGVLASATNAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L +++I  LV +   +  +  
Sbjct: 117 AELNKHTILSLVEDNVPLVNLLG 139


>gi|78355271|ref|YP_386720.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217676|gb|ABB37025.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 199

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++  + Y  R+L+    H D  P   + +A+   IS  F+ K+++PL +AG+VE+VRG
Sbjct: 1   MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLKQAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    +QI++ DVV+A E    +  C    +  C    SC    +      A  
Sbjct: 61  ATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPE-RCRSKESCRTRQMWSGVSRALE 119

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  L+ + + 
Sbjct: 120 RTLDAITLLDLLNDPAP 136


>gi|152976812|ref|YP_001376329.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025564|gb|ABS23334.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 138

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAKAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPANITAGDVIRVLEGPISVVEMLEEEEP--------AQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|299822827|ref|ZP_07054713.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816356|gb|EFI83594.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 148

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ V +  A    + P  +  IAEA  +SE +L +++ PL  AGIV+++RG
Sbjct: 8   MKITTKGRYGLTVTLELARQVGNGPISLRSIAEAKGLSEHYLEQLIGPLRNAGIVKSIRG 67

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  DV++  E    + E   + +             +  +  NA  
Sbjct: 68  AYGGYVLNHDPSEITAGDVIRTLEGPIVLVEGMENEES--------AQRELWTRMRNAVR 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   ++  L+ +  + + +
Sbjct: 120 DVLDNTTLSDLLAHSENERAL 140


>gi|304407560|ref|ZP_07389212.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343511|gb|EFM09353.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 139

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M   A   + P  +  IAE   +SE +L +++ PL  AG+V++VRG
Sbjct: 1   MKISTKGRYGLTIMMELSAKFGEGPISLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + ADQIT  DV++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILSKAADQITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112

Query: 120 DVLTQYSIECLV 131
            VL   ++  LV
Sbjct: 113 SVLDSTTLGDLV 124


>gi|330992598|ref|ZP_08316546.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760797|gb|EGG77293.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 145

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA+   IS+  L K++  L   G+V   RGR
Sbjct: 1   MRLTLHTDYSIRALIYLGQNPGRRVAIQEIADTHRISQNHLVKVINRLSTNGVVLARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GGV L     QI I DVV+  E     +  C       C L  +C L  +  K++NAF 
Sbjct: 61  NGGVELAHTPRQIVIGDVVRLMESDVSAIVSCIPGSGQQCILADACRLRKLFSKSMNAFM 120

Query: 120 DVLTQYSIECLVRN 133
            VL + ++  ++ +
Sbjct: 121 AVLDRLTLHDMLCD 134


>gi|294340149|emb|CAZ88521.1| putative Transcriptional regulator [Thiomonas sp. 3As]
          Length = 154

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 63/129 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD+G+R LM  A + D      ++A    IS   L K+LQ L   G V+  RG 
Sbjct: 1   MKLTQFTDFGLRALMVLAENPDQSLNSKELARILDISREHLIKVLQRLAAGGYVQNQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL + A +I + +VV+  E+   + EC       C L   C L  +L  A  AF+ 
Sbjct: 61  NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120

Query: 121 VLTQYSIEC 129
            L   ++  
Sbjct: 121 RLNTSTLAD 129


>gi|77918038|ref|YP_355853.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544121|gb|ABA87683.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 154

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ T+Y IR +++ A            I     I+  FL KILQPL+K GIV + RG
Sbjct: 1   MIITRATEYAIRAVLFMATQPRGETVLKKDICREQEITPAFLTKILQPLIKQGIVGSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +    IT+LDV+KA E   ++  C A    +C    +C +  V R+A     
Sbjct: 61  IGGGFYLAKDPADITLLDVIKAEEGPIYLNLCLAEE-TNCNREPTCPVNRVWREARTQLL 119

Query: 120 DVLTQYSIECLVR 132
            VL +YS   L R
Sbjct: 120 AVLDRYSFADLCR 132


>gi|30022474|ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|30264468|ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42783527|ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47529926|ref|YP_021275.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566586|ref|ZP_00237408.1| RRF2 family protein [Bacillus cereus G9241]
 gi|49187289|ref|YP_030541.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49478626|ref|YP_038448.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141107|ref|YP_085720.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65321765|ref|ZP_00394724.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|118479556|ref|YP_896707.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|167636502|ref|ZP_02394799.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167638649|ref|ZP_02396925.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170689641|ref|ZP_02880823.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|177653236|ref|ZP_02935488.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190566990|ref|ZP_03019906.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034450|ref|ZP_03101859.1| rrf2 family protein [Bacillus cereus W]
 gi|196039239|ref|ZP_03106545.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|196044851|ref|ZP_03112085.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|206969679|ref|ZP_03230633.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206976049|ref|ZP_03236959.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217961888|ref|YP_002340458.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218235656|ref|YP_002369208.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218899567|ref|YP_002447978.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218905593|ref|YP_002453427.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222097841|ref|YP_002531898.1| transcriptional regulator [Bacillus cereus Q1]
 gi|225866380|ref|YP_002751758.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227817177|ref|YP_002817186.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|228902926|ref|ZP_04067067.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
 gi|228910234|ref|ZP_04074052.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
 gi|228917032|ref|ZP_04080592.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923150|ref|ZP_04086441.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929443|ref|ZP_04092464.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935719|ref|ZP_04098532.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941566|ref|ZP_04104115.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948112|ref|ZP_04110396.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954683|ref|ZP_04116706.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960670|ref|ZP_04122315.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967473|ref|ZP_04128502.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974496|ref|ZP_04135063.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981090|ref|ZP_04141391.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
 gi|228987650|ref|ZP_04147764.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228993136|ref|ZP_04153058.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
 gi|228999185|ref|ZP_04158767.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
 gi|229006733|ref|ZP_04164367.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
 gi|229032048|ref|ZP_04188031.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
 gi|229048106|ref|ZP_04193679.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
 gi|229071907|ref|ZP_04205118.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
 gi|229081663|ref|ZP_04214158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
 gi|229086961|ref|ZP_04219118.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
 gi|229093469|ref|ZP_04224572.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
 gi|229098870|ref|ZP_04229806.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
 gi|229105032|ref|ZP_04235686.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
 gi|229111871|ref|ZP_04241417.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
 gi|229117895|ref|ZP_04247257.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
 gi|229123939|ref|ZP_04253131.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
 gi|229129679|ref|ZP_04258647.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229141135|ref|ZP_04269677.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
 gi|229146969|ref|ZP_04275333.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229152602|ref|ZP_04280791.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
 gi|229158014|ref|ZP_04286085.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
 gi|229163347|ref|ZP_04291299.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
 gi|229175072|ref|ZP_04302590.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
 gi|229180674|ref|ZP_04308014.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
 gi|229186638|ref|ZP_04313799.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
 gi|229192610|ref|ZP_04319571.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
 gi|229198525|ref|ZP_04325229.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
 gi|229600467|ref|YP_002868685.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254684154|ref|ZP_05148014.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724675|ref|ZP_05186458.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254736501|ref|ZP_05194207.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741539|ref|ZP_05199226.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254751362|ref|ZP_05203399.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254757694|ref|ZP_05209721.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|296504891|ref|YP_003666591.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|300119220|ref|ZP_07056917.1| rrf2 family protein [Bacillus cereus SJ1]
 gi|301055906|ref|YP_003794117.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|29898032|gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|30259126|gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42739456|gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47505074|gb|AAT33750.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556616|gb|EAL14948.1| RRF2 family protein [Bacillus cereus G9241]
 gi|49181216|gb|AAT56592.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49330182|gb|AAT60828.1| probable transcriptional regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974576|gb|AAU16126.1| probable transcriptional regulator [Bacillus cereus E33L]
 gi|118418781|gb|ABK87200.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|167513497|gb|EDR88867.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167528095|gb|EDR90892.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170666411|gb|EDT17192.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172081518|gb|EDT66590.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190561981|gb|EDV15950.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992992|gb|EDX56951.1| rrf2 family protein [Bacillus cereus W]
 gi|196024339|gb|EDX63012.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|196029866|gb|EDX68467.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206735367|gb|EDZ52535.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206745801|gb|EDZ57198.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217066112|gb|ACJ80362.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218163613|gb|ACK63605.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218539499|gb|ACK91897.1| rrf2 family protein [Bacillus cereus AH820]
 gi|218541342|gb|ACK93736.1| rrf2 family protein [Bacillus cereus G9842]
 gi|221241899|gb|ACM14609.1| probable transcriptional regulator [Bacillus cereus Q1]
 gi|225789058|gb|ACO29275.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227007748|gb|ACP17491.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|228585028|gb|EEK43142.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
 gi|228590917|gb|EEK48775.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
 gi|228596897|gb|EEK54556.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228602819|gb|EEK60300.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
 gi|228608440|gb|EEK65744.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
 gi|228620128|gb|EEK77002.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
 gi|228625467|gb|EEK82223.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
 gi|228630863|gb|EEK87503.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
 gi|228636568|gb|EEK93034.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228642413|gb|EEK98702.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228653796|gb|EEL09666.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228659241|gb|EEL14889.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
 gi|228665552|gb|EEL21032.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
 gi|228671627|gb|EEL26925.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
 gi|228678409|gb|EEL32632.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
 gi|228684543|gb|EEL38485.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
 gi|228689940|gb|EEL43744.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
 gi|228696337|gb|EEL49165.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
 gi|228701667|gb|EEL54158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
 gi|228711203|gb|EEL63167.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
 gi|228723261|gb|EEL74633.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
 gi|228729293|gb|EEL80287.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
 gi|228754594|gb|EEM04005.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
 gi|228760802|gb|EEM09766.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
 gi|228766595|gb|EEM15236.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
 gi|228772110|gb|EEM20562.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778631|gb|EEM26897.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
 gi|228785213|gb|EEM33225.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792250|gb|EEM39823.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799034|gb|EEM46006.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805010|gb|EEM51606.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811470|gb|EEM57807.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228818122|gb|EEM64198.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823957|gb|EEM69776.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830231|gb|EEM75847.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836529|gb|EEM81879.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842639|gb|EEM87727.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849398|gb|EEM94234.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
 gi|228856710|gb|EEN01229.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
 gi|229264875|gb|ACQ46512.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|296325943|gb|ADH08871.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|298723440|gb|EFI64185.1| rrf2 family protein [Bacillus cereus SJ1]
 gi|300378075|gb|ADK06979.1| probable transcriptional regulator [Bacillus cereus biovar
           anthracis str. CI]
 gi|324328301|gb|ADY23561.1| putative transcriptional regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326942180|gb|AEA18076.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 138

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPANITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|16331737|ref|NP_442465.1| hypothetical protein slr0846 [Synechocystis sp. PCC 6803]
 gi|7429419|pir||S75800 hypothetical protein slr0846 - Synechocystis sp. (strain PCC 6803)
 gi|1673323|dbj|BAA10535.1| slr0846 [Synechocystis sp. PCC 6803]
          Length = 157

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y ++ L+  A+  D  P  +  IAE   I   +L K+L  L +AGIV   RG
Sbjct: 11  MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +  DQI++  ++ A EES      F  +  D  L       SV R+    F 
Sbjct: 71  VRGGYQLAQAPDQISLGQILAALEESLEP---FPQYGDDQSLAEDWVTLSVWRQLHQKFV 127

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
             L   ++  L  +  S +     G
Sbjct: 128 KALYSITLADLYYDARSWQAAQGEG 152


>gi|332654223|ref|ZP_08419967.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
 gi|332517309|gb|EGJ46914.1| iron-sulfur cluster assembly transcription factor IscR
           [Ruminococcaceae bacterium D16]
          Length = 139

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RV++  A         +  IA+   +SE +L  I++ L + G +  VRG
Sbjct: 3   MMVSTKGRYALRVMIDLAQQGGAGYIPLKDIAQRQGLSEKYLESIVKLLARNGDLAGVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R     ++  +++ TE       C A     C     C    +  K      
Sbjct: 63  KGGGYRLTRAPKDYSVGAILRLTEGKLAPVNCQALEG-QCENAAQCRTRPLWEKLDAMVE 121

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   ++  L+    +
Sbjct: 122 EYLDGVTLADLLEGPGA 138


>gi|182677317|ref|YP_001831463.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633200|gb|ACB93974.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 180

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YGI  L++     D    I ++AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HLTISVEYGIHCLLWLVGSGDTAMSIRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL R  ++I+ LD+V A E    + +C         FA    +  + G C +  V+ 
Sbjct: 63  GGYRLGRSPEEISFLDIVDAIEGHKPLFDCQEVRERCALFAGKPPEWAMKGVCAIHGVML 122

Query: 113 KALNAFFDVLTQYSIECLVR 132
           +A  A  D L   ++  +  
Sbjct: 123 QAEKAMRDSLASQTLADVAA 142


>gi|269961409|ref|ZP_06175773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833786|gb|EEZ87881.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 141

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  +    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKEELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+  E    +  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLLKAPKEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAKAKMAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L   +IE L+ + S +  + 
Sbjct: 117 AELDGCTIEELLSDNSELLILL 138


>gi|51241738|dbj|BAD36774.1| CDG1D [Gluconacetobacter xylinus]
          Length = 138

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA+   IS+  L K++  L   G++   RGR
Sbjct: 1   MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAQTHSISQNHLVKVVNRLSSNGVILARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L     QI I D+++  E     +  C   +   C L  +C L  +  K++NAF 
Sbjct: 61  SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLRGLFAKSVNAFL 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL + ++  ++     +
Sbjct: 121 SVLDRITLHDILHEPKKL 138


>gi|184158243|ref|YP_001846582.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183209837|gb|ACC57235.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
          Length = 182

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +Y I  L++   + D P     +AE   +S  F+ KI   L KAG+V    G RG
Sbjct: 4   ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G  L R A +I+ LD+V A E    + EC         F +   D    G C + +V+ +
Sbjct: 64  GYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  D L  +++  +   
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143


>gi|294501358|ref|YP_003565058.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           megaterium QM B1551]
 gi|295706705|ref|YP_003599780.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           megaterium DSM 319]
 gi|294351295|gb|ADE71624.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           megaterium QM B1551]
 gi|294804364|gb|ADF41430.1| transcriptional regulator of cysteine biosynthesis [Bacillus
           megaterium DSM 319]
          Length = 138

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+   +SE +L +++ PL  AG+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELAKRFGEGPISLKTIAQTHDLSEHYLEQLISPLRNAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  D++   E      E     +             +  +  +A  
Sbjct: 61  AYGGYILAHEPANITSGDIISVLEGPISPVEGIEDEEP--------AKRELWIRIRDAVK 112

Query: 120 DVLTQYSIECLVRNRSS 136
           +VL   ++E L  +   
Sbjct: 113 EVLDSTTLEDLANHSDD 129


>gi|237747468|ref|ZP_04577948.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229378819|gb|EEO28910.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 155

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A H  + P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVMAMIDLARHQKNGPVSLAGISERQDISVAYLEQLFSKLRRGNLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             GG  L   A  ITI D+V A +E   V  C      +C      C   ++        
Sbjct: 61  PGGGYLLSGNAGDITIADIVFAVDEPLDVTRC--GGNGNCAKGSVKCVTHNLWASLNERI 118

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D L    +  L    S++
Sbjct: 119 IDYLESVLLSDLSEMDSAL 137


>gi|222055544|ref|YP_002537906.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564833|gb|ACM20805.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 153

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 6/147 (4%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ L+Y +      P  I+ +AE   I + FL  IL  L   GI+ + +G+ 
Sbjct: 2   ISKKTKYALKALIYLSRTKKGEPVLIADLAEDEKIPKKFLELILLTLKNNGILHSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I++  V++  E       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYSLGKLPREISMGSVIRMLEGPLAPVPCVSETAYSKCTECEDETTCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
              +L   +++ ++  R+    +   G
Sbjct: 122 ITQILDHTTLQDVLE-RTERAALLEKG 147


>gi|302036962|ref|YP_003797284.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300605026|emb|CBK41359.1| putative HTH-type transcriptional regulator, rrf2 family
           [Candidatus Nitrospira defluvii]
          Length = 141

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K+++YG+R L+     +     +  +IAE   I   FL +IL  L +AG++ + RG
Sbjct: 1   MKFSKKSEYGLRALLELCETYGGRVLQRHEIAERQNIPVEFLEQILLALKRAGLLASRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLV--GSCGLTSVLRK 113
            RGG  L +  + IT+  V++  +       C +        DCP     SC L   + +
Sbjct: 61  VRGGYSLIKSPEDITLGQVIRILDGPLAPISCVSKTAYQKCADCPYAAKPSCPLQQAMGE 120

Query: 114 ALNAFFDVLTQYSIE 128
             +A  ++L  Y++ 
Sbjct: 121 VRDAIANILDHYTLS 135


>gi|310779512|ref|YP_003967845.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
 gi|309748835|gb|ADO83497.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
          Length = 140

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R  YG+R L+Y A  N   D   RI +I++   IS  +L +IL  L K  I+E  
Sbjct: 1   MKISTRIRYGLRALVYIAEQNRDFDRLVRIKEISKDQNISVQYLEQILFKLKKENIIEGK 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L     +I +  + +  +    + +C  + +    +   C  + +  +  NA
Sbjct: 61  RGPNGGYKLIGDPKKINVFRLYEILDSDVKIVDCNENTENKSCVEEKCRTSCLWSRLDNA 120

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             D+L + +++ L+ N+  +
Sbjct: 121 LSDILKETTLDDLINNKEMM 140


>gi|317062001|ref|ZP_07926486.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687677|gb|EFS24512.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 152

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 13  MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 72

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C     HK  C    +CG T +  K  +
Sbjct: 73  GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 131

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 132 AMTKILKETTLNEFIKNKDMI 152


>gi|257467708|ref|ZP_05631804.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 140

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C     HK  C    +CG T +  K  +
Sbjct: 61  GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140


>gi|194017204|ref|ZP_03055816.1| YrzC [Bacillus pumilus ATCC 7061]
 gi|194011072|gb|EDW20642.1| YrzC [Bacillus pumilus ATCC 7061]
          Length = 164

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  A +V+++RG 
Sbjct: 27  KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRGA 86

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L    ++IT  D+++  E      E   + +            ++  +  +A  D
Sbjct: 87  YGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEP--------AKRALWIRIRDAVKD 138

Query: 121 VLTQYSIECLV 131
           VL   ++E L 
Sbjct: 139 VLDNTTLEDLA 149


>gi|237746485|ref|ZP_04576965.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229377836|gb|EEO27927.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 154

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R ++    + +     +  +     IS  +L +I   L KAG++++VRG
Sbjct: 1   MKISTKGRYALRFMIDLVQYGNGNYISLKDVIARQHISPKYLEQIATALGKAGLIQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R  +  TI D+++  E +     C  +   +CP   +C          +   
Sbjct: 61  PQGGYKLSRQPESYTIGDILRPIEGNLACVACLETTPNECPQYANCTAVRFWEGLHHVVL 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   +++ L   R
Sbjct: 121 NYLNSTNLKELADMR 135


>gi|82701827|ref|YP_411393.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82409892|gb|ABB74001.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 172

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  A+     P  +++I++   IS  +L ++   L   G+V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDLALQRQTRPVTLAEISQRQQISLSYLEQLFAKLRSRGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   Q+++ +++ A +E     +C  + K +C     C    +  K     F
Sbjct: 61  PGGGYCLAKDMGQVSVAEIILAVDEPIDSTQC--NGKENCHNDRKCMTHDLWTKLNELIF 118

Query: 120 DVLTQYSIECLVR 132
           D L   +++ LV 
Sbjct: 119 DHLGAVTLKQLVD 131


>gi|320662819|gb|EFX30151.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 162

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   N   
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSNRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|170767352|ref|ZP_02901805.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           albertii TW07627]
 gi|170123686|gb|EDS92617.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           albertii TW07627]
          Length = 162

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|260598923|ref|YP_003211494.1| DNA-binding transcriptional regulator IscR [Cronobacter turicensis
           z3032]
 gi|260218100|emb|CBA32871.1| HTH-type transcriptional regulator iscR [Cronobacter turicensis
           z3032]
          Length = 162

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A QI + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|242277828|ref|YP_002989957.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           salexigens DSM 2638]
 gi|242120722|gb|ACS78418.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           salexigens DSM 2638]
          Length = 141

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y  R+L+  A+  +D P + + ++E+  I+  F+ +IL+PL KAG++ +VRG
Sbjct: 1   MKLSARARYATRLLLDLALRQSDTPRKTTLLSESTGITVQFIEQILRPLKKAGLIVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +    I+I ++V+  E    + +C A   I C    +C    V  ++     
Sbjct: 61  ATGGHILDKDPSTISIGEIVRIMEGGINLTDCVADESI-CARSATCKTRKVWVRSSKVLE 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   SI  L+ N  S
Sbjct: 120 EELDSISIADLMDNPDS 136


>gi|153835424|ref|ZP_01988091.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
           HY01]
 gi|156972466|ref|YP_001443373.1| transcriptional repressor NsrR [Vibrio harveyi ATCC BAA-1116]
 gi|189030890|sp|A7MX86|NSRR_VIBHB RecName: Full=HTH-type transcriptional repressor nsrR
 gi|148868029|gb|EDL67214.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
           HY01]
 gi|156524060|gb|ABU69146.1| hypothetical protein VIBHAR_00086 [Vibrio harveyi ATCC BAA-1116]
          Length = 141

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A +  D    I+++ +   +S   + K++  L + G V TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL +   +IT+  VV+  E    +  C       C +  +C L   L KA  AF 
Sbjct: 61  KNGGIRLMKAPQEITVGGVVRDLE-PLDLVNCSVEF---CHITPACRLKEKLAKAKLAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L   +IE L+ + S +  + 
Sbjct: 117 AELDDCTIEELLSDNSELLILL 138


>gi|289433915|ref|YP_003463787.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170159|emb|CBH26699.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 138

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA  I+ LDV++A E       C    K        C +  V+  A     
Sbjct: 61  VNGGYKLAKPASNISFLDVIQAIEGKTAFFHC--DPKNHAETKPHCLIGEVMGNAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ +I  +V
Sbjct: 119 DYLSKQTIGSIV 130


>gi|256826980|ref|YP_003150939.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
 gi|256583123|gb|ACU94257.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
          Length = 152

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+ +  A H    P  + + A+   IS  ++ ++   +   G++ + RG
Sbjct: 1   MKISTKGRYALRLAIDVAQHQLAGPVPLRESAKRQGISVKYMEQLAAQMTHGGLLTSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R    IT  D+++ +E  +    C       CP  G+C   +       A  
Sbjct: 61  AHGGYRLARLDTDITAGDILRVSEGGYAPVACLEDDFGICPHRGACETIAFWEGLDQAIE 120

Query: 120 DVLTQYSIECLV 131
             +   ++  LV
Sbjct: 121 RYVDSVTLADLV 132


>gi|218514457|ref|ZP_03511297.1| iron-responsive transcriptional regulator [Rhizobium etli 8C-3]
          Length = 146

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 84/118 (71%), Gaps = 3/118 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T+Y +R+LMYCA +    +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1   MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNA 117
            GGVRL +PA  IT+ DVV+ TE+SF +AECF     ++CPLV S  L      A  A
Sbjct: 61  NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDS--LRPEFGAAQGA 116


>gi|171057733|ref|YP_001790082.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
           SP-6]
 gi|170775178|gb|ACB33317.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
           SP-6]
          Length = 177

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+     P  ++ I+    IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALREHTGPVALAAISARQQISLSYLEQLFGKLRRHELVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A+ IT+ D++ A +E+     C           G C    +         
Sbjct: 61  PGGGYSLGRKAEDITVADIIVAVDEAIDSTGCGGGENCMGDDTGRCMTHDLWTSLNAKML 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   S+  LV+++
Sbjct: 121 EYLHSISLRSLVQDQ 135


>gi|300692019|ref|YP_003753014.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum PSI07]
 gi|299079079|emb|CBJ51741.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
           transcription factor [Ralstonia solanacearum PSI07]
          Length = 191

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T +  + +  ++  A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG  
Sbjct: 1   MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNAF 118
           GG  L R AD +T+ D++ A +E     +C    K +C      G C    +        
Sbjct: 61  GGYSLARRADDVTVADIIIAVDEPLDATQC--GGKGNCGGEEHSGRCMTHDLWATLNQKM 118

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + L   S++ LV  +   + 
Sbjct: 119 VEYLDSVSLQNLVDQQRERQP 139


>gi|306820338|ref|ZP_07453977.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551667|gb|EFM39619.1| iron-sulfur cluster assembly transcription regulator IscR
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 142

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y ++ +   AI + + P  +S I+E   +SEL+L +I   L K  IV+++RG
Sbjct: 1   MIISTKGRYALKAVFELAIADKNTPLPLSMISEKSGLSELYLEQIFSVLKKNNIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    I++ +V+K  E     A+C       C ++  C    +      A  
Sbjct: 61  AQGGYFLTKDTKDISVGEVIKPLEGDLSPAKCLEEDGY-CDMLDRCPTYMIWDNIKKAID 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DV+   ++  +V       K+
Sbjct: 120 DVVDNTTLADMVDEYYKKHKL 140


>gi|87310930|ref|ZP_01093056.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
           3645]
 gi|87286445|gb|EAQ78353.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
           3645]
          Length = 138

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LM+ A  +D    ++ +A+   IS   + K++  L K G V ++RG 
Sbjct: 1   MKLTTQTDYALRTLMFLATRSDR-ANVANVAQLFGISVHHVAKVVNSLAKYGYVRSIRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R   +I + +VV+  E S  + +C  +  I C +   C L  VL +A      
Sbjct: 60  GGGIELARQPREIRLGEVVERFEGSTHLLDCIDTEDI-CAIQSFCKLKGVLAEAERVQRA 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L   ++  +      ++ +
Sbjct: 119 YLDSVTLADVAPTSRQLQLL 138


>gi|298505456|gb|ADI84179.1| transcriptional regulator, Rrf2 family [Geobacter sulfurreducens
           KN400]
          Length = 153

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ ++Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKAMLYLAREQDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +P  +I++  +++  E      +C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAQPPREISMGRIIRILEGPLAPVQCVSETSYARCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++  ++  
Sbjct: 122 MATILDGATLADVLER 137


>gi|118579599|ref|YP_900849.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus
           DSM 2379]
 gi|118502309|gb|ABK98791.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus
           DSM 2379]
          Length = 134

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT++ +Y IR ++Y A    D    +S+IA A  + + FL KI Q   K G+V + RG
Sbjct: 2   MELTRKGEYAIRGIVYLASRPGDQVCLLSEIAAAVDVPQTFLAKIFQQFSKIGLVRSYRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  ++IT+L+VV+A E       C      +C    +C +  V  +  +   
Sbjct: 62  TGGGFMLGRAPEKITLLEVVEAVEGPVVPNRCVIG-AGECDRSVACRVHPVWIEVQHEVR 120

Query: 120 DVLTQYSIECLV 131
            +L + +++ L 
Sbjct: 121 AILARVTLKELA 132


>gi|294668749|ref|ZP_06733842.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291309266|gb|EFE50509.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 147

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  +   +++ I+E   IS  +L ++   L +A +V+++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQNGAVKLNDISERQNISLSYLEQLFGKLRRAKLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   AD+I+I  ++ A E+      C  S K +C     C    +         
Sbjct: 61  PGGGYVLAAAADEISIAQIITAAEDRLDATLC--SSKANCHNGAPCLTHDLWENLNRTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
             L+  +++ ++  + 
Sbjct: 119 QYLSSVTLQTVLNQKD 134


>gi|317128228|ref|YP_004094510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473176|gb|ADU29779.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 139

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A  + + P  +  IA    +SE +L +++ PL  A +V++VRG
Sbjct: 1   MKISTKGRYGLTIMMALAKKYGEGPISLKSIAIDHDLSEHYLEQLIAPLRNATLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  +QIT  D+++  E      E     +             +  K  +A  
Sbjct: 61  AYGGYMLSKSPEQITAGDIIRVLEGPITPVEVVDDEEP--------AKRDLWIKIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           DVL   ++E L  
Sbjct: 113 DVLDSTTLEDLAN 125


>gi|167562509|ref|ZP_02355425.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
 gi|167569690|ref|ZP_02362564.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
          Length = 165

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ +VV+ TE  F +  CFA        C +  +C L  V   A +A
Sbjct: 61  NGGLRLNAQSAALTVGEVVRKTENDFALVGCFADESESHRSCVIQSACRLKGVFAAARDA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELSQPASQLAALLG 145


>gi|71066031|ref|YP_264758.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039016|gb|AAZ19324.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter arcticus
           273-4]
          Length = 170

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  A+     D    +S IA+   IS  +L ++   L K G+V ++
Sbjct: 1   MRLTTRGRYAVTALLDLALQTSQQDSAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L +P DQI ++ ++ A +ES    +C    + DC     C    +     N 
Sbjct: 61  RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118

Query: 118 FFDVLTQYSIECLVR 132
               L   ++  L+ 
Sbjct: 119 VEQYLKNITLAQLLN 133


>gi|6136580|sp|Q55433|Y846_SYNY3 RecName: Full=Putative HTH-type transcriptional regulator slr0846
          Length = 147

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y ++ L+  A+  D  P  +  IAE   I   +L K+L  L +AGIV   RG
Sbjct: 1   MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +  DQI++  ++ A EES      F  +  D  L       SV R+    F 
Sbjct: 61  VRGGYQLAQAPDQISLGQILAALEESLEP---FPQYGDDQSLAEDWVTLSVWRQLHQKFV 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
             L   ++  L  +  S +     G
Sbjct: 118 KALYSITLADLYYDARSWQAAQGEG 142


>gi|329115226|ref|ZP_08243981.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
 gi|326695669|gb|EGE47355.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
          Length = 169

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 7/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H +    I +IA    ISE  L KI+  L + G V+T+RGR
Sbjct: 13  MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFVDTLRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115
            GG+ L R  + I I DVV+ TE+   +  C +         +C L  +C L   L +AL
Sbjct: 73  GGGLMLGRAPEDIRIGDVVRHTEDDMALVSCMSPSPGVPGSAECLLARACHLRGALGEAL 132

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
           +AF  VL   ++  ++      ++I   
Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQILQE 158


>gi|15803058|ref|NP_289088.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 EDL933]
 gi|15832651|ref|NP_311424.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130456|ref|NP_417026.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113860|ref|NP_708370.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
           str. 301]
 gi|26248899|ref|NP_754939.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           CFT073]
 gi|30063921|ref|NP_838092.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
           str. 2457T]
 gi|82544980|ref|YP_408927.1| DNA-binding transcriptional regulator IscR [Shigella boydii Sb227]
 gi|82777914|ref|YP_404263.1| DNA-binding transcriptional regulator IscR [Shigella dysenteriae
           Sd197]
 gi|89109337|ref|AP_003117.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. W3110]
 gi|91211858|ref|YP_541844.1| DNA-binding transcriptional regulator IscR [Escherichia coli UTI89]
 gi|110642696|ref|YP_670426.1| DNA-binding transcriptional regulator IscR [Escherichia coli 536]
 gi|110806462|ref|YP_689982.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 5
           str. 8401]
 gi|117624759|ref|YP_853672.1| DNA-binding transcriptional regulator IscR [Escherichia coli APEC
           O1]
 gi|157158615|ref|YP_001463854.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           E24377A]
 gi|168748404|ref|ZP_02773426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4113]
 gi|168761147|ref|ZP_02786154.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768629|ref|ZP_02793636.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4486]
 gi|168773549|ref|ZP_02798556.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778503|ref|ZP_02803510.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4076]
 gi|168787883|ref|ZP_02812890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC869]
 gi|168798908|ref|ZP_02823915.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC508]
 gi|170082141|ref|YP_001731461.1| Fe-S cluster-containing transcription factor [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170684046|ref|YP_001744720.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           SMS-3-5]
 gi|187732827|ref|YP_001881322.1| DNA-binding transcriptional regulator IscR [Shigella boydii CDC
           3083-94]
 gi|188493127|ref|ZP_03000397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 53638]
 gi|191172663|ref|ZP_03034202.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli F11]
 gi|193064097|ref|ZP_03045182.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E22]
 gi|194427320|ref|ZP_03059870.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B171]
 gi|194432170|ref|ZP_03064459.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           dysenteriae 1012]
 gi|194437555|ref|ZP_03069651.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 101-1]
 gi|195936677|ref|ZP_03082059.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809238|ref|ZP_03251575.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812791|ref|ZP_03254120.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820582|ref|ZP_03260902.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4042]
 gi|209399149|ref|YP_002272006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4115]
 gi|215487881|ref|YP_002330312.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326708|ref|ZP_03442791.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. TW14588]
 gi|218548032|ref|YP_002381823.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii
           ATCC 35469]
 gi|218559457|ref|YP_002392370.1| DNA-binding transcriptional regulator IscR [Escherichia coli S88]
 gi|218690651|ref|YP_002398863.1| DNA-binding transcriptional regulator IscR [Escherichia coli ED1a]
 gi|218696158|ref|YP_002403825.1| DNA-binding transcriptional regulator IscR [Escherichia coli 55989]
 gi|218701041|ref|YP_002408670.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI39]
 gi|218706034|ref|YP_002413553.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           UMN026]
 gi|227887567|ref|ZP_04005372.1| transcription regulator [Escherichia coli 83972]
 gi|237705042|ref|ZP_04535523.1| iscRSUA operon transcriptional regulator [Escherichia sp.
           3_2_53FAA]
 gi|238901696|ref|YP_002927492.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|253772573|ref|YP_003035404.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162505|ref|YP_003045613.1| DNA-binding transcriptional regulator IscR [Escherichia coli B str.
           REL606]
 gi|254794481|ref|YP_003079318.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021784|ref|ZP_05435649.1| DNA-binding transcriptional regulator IscR [Escherichia sp.
           4_1_40B]
 gi|260845161|ref|YP_003222939.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O103:H2 str. 12009]
 gi|261223033|ref|ZP_05937314.1| Fe-S cluster-containing transcription factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259416|ref|ZP_05951949.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283756|ref|YP_003500574.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405972|ref|ZP_06649964.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           FVEC1412]
 gi|293410946|ref|ZP_06654522.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B354]
 gi|293415799|ref|ZP_06658442.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B185]
 gi|293446885|ref|ZP_06663307.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B088]
 gi|297518205|ref|ZP_06936591.1| DNA-binding transcriptional regulator IscR [Escherichia coli OP50]
 gi|298381773|ref|ZP_06991372.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           FVEC1302]
 gi|300898361|ref|ZP_07116707.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 198-1]
 gi|300904292|ref|ZP_07122150.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 84-1]
 gi|300920690|ref|ZP_07137098.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 115-1]
 gi|300927102|ref|ZP_07142852.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 182-1]
 gi|300930175|ref|ZP_07145593.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 187-1]
 gi|300940215|ref|ZP_07154815.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 21-1]
 gi|300951758|ref|ZP_07165577.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 116-1]
 gi|300958835|ref|ZP_07170946.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 175-1]
 gi|300982031|ref|ZP_07175853.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 45-1]
 gi|300998260|ref|ZP_07181948.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 200-1]
 gi|301022140|ref|ZP_07186063.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 196-1]
 gi|301024813|ref|ZP_07188450.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 69-1]
 gi|301047168|ref|ZP_07194261.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 185-1]
 gi|301302889|ref|ZP_07209017.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 124-1]
 gi|301330373|ref|ZP_07223018.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 78-1]
 gi|301648289|ref|ZP_07248030.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 146-1]
 gi|306814399|ref|ZP_07448561.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101]
 gi|307139166|ref|ZP_07498522.1| DNA-binding transcriptional regulator IscR [Escherichia coli H736]
 gi|307313898|ref|ZP_07593514.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|309784715|ref|ZP_07679348.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           dysenteriae 1617]
 gi|312965449|ref|ZP_07779681.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 2362-75]
 gi|331643152|ref|ZP_08344287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H736]
 gi|331648229|ref|ZP_08349319.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli M605]
 gi|331653965|ref|ZP_08354966.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli M718]
 gi|331658679|ref|ZP_08359623.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA206]
 gi|331664096|ref|ZP_08365006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA143]
 gi|331684181|ref|ZP_08384777.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H299]
 gi|84027939|sp|P0AGL0|ISCR_ECO57 RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027940|sp|P0AGK9|ISCR_ECOL6 RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027941|sp|P0AGK8|ISCR_ECOLI RecName: Full=HTH-type transcriptional regulator iscR
 gi|84027942|sp|P0AGL1|ISCR_SHIFL RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371148|sp|Q0TEV4|ISCR_ECOL5 RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371149|sp|Q1R8K1|ISCR_ECOUT RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371150|sp|Q31XV9|ISCR_SHIBS RecName: Full=HTH-type transcriptional regulator iscR
 gi|119371151|sp|Q32D33|ISCR_SHIDS RecName: Full=HTH-type transcriptional regulator iscR
 gi|123342619|sp|Q0T1Y8|ISCR_SHIF8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044743|sp|A7ZPX5|ISCR_ECO24 RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044745|sp|A1AE68|ISCR_ECOK1 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711610|sp|B7MIM1|ISCR_ECO45 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711611|sp|B5Z105|ISCR_ECO5E RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711612|sp|B7NRI0|ISCR_ECO7I RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711614|sp|B1XB06|ISCR_ECODH RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711615|sp|B7N6B8|ISCR_ECOLU RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711617|sp|B1LNI7|ISCR_ECOSM RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711619|sp|B7LJQ3|ISCR_ESCF3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711629|sp|B2TXV6|ISCR_SHIB3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806053|sp|B7UGX7|ISCR_ECO27 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806054|sp|B7LDC3|ISCR_ECO55 RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806055|sp|B7MYG4|ISCR_ECO81 RecName: Full=HTH-type transcriptional regulator iscR
 gi|259493873|sp|C4ZXA6|ISCR_ECOBW RecName: Full=HTH-type transcriptional regulator iscR
 gi|12516935|gb|AAG57645.1|AE005483_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26109305|gb|AAN81507.1|AE016764_189 Hypothetical protein yfhP [Escherichia coli CFT073]
 gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799939|dbj|BAA16425.1| DNA-binding transcriptional activator [Escherichia coli str. K12
           substr. W3110]
 gi|13362868|dbj|BAB36820.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24052954|gb|AAN44077.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042177|gb|AAP17902.1| hypothetical protein S2750 [Shigella flexneri 2a str. 2457T]
 gi|81242062|gb|ABB62772.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81246391|gb|ABB67099.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91073432|gb|ABE08313.1| iscRSUA operon transcriptional regulator [Escherichia coli UTI89]
 gi|110344288|gb|ABG70525.1| hypothetical protein YfhP [Escherichia coli 536]
 gi|110616010|gb|ABF04677.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115513883|gb|ABJ01958.1| DNA-binding transcriptional repressor [Escherichia coli APEC O1]
 gi|157080645|gb|ABV20353.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E24377A]
 gi|169889976|gb|ACB03683.1| Fe-S cluster-containing transcription factor [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170521764|gb|ACB19942.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli SMS-3-5]
 gi|187429819|gb|ACD09093.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           boydii CDC 3083-94]
 gi|187770671|gb|EDU34515.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4196]
 gi|188017096|gb|EDU55218.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488326|gb|EDU63429.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 53638]
 gi|189003523|gb|EDU72509.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4076]
 gi|189362292|gb|EDU80711.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4486]
 gi|189368435|gb|EDU86851.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372323|gb|EDU90739.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC869]
 gi|189378593|gb|EDU97009.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC508]
 gi|190907136|gb|EDV66736.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli F11]
 gi|192929332|gb|EDV82941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E22]
 gi|194414641|gb|EDX30913.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B171]
 gi|194419699|gb|EDX35779.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           dysenteriae 1012]
 gi|194423361|gb|EDX39352.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 101-1]
 gi|208729039|gb|EDZ78640.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734068|gb|EDZ82755.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740705|gb|EDZ88387.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4042]
 gi|209160549|gb|ACI37982.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. EC4115]
 gi|209763228|gb|ACI79926.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763230|gb|ACI79927.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763232|gb|ACI79928.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763234|gb|ACI79929.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|209763236|gb|ACI79930.1| hypothetical protein ECs3397 [Escherichia coli]
 gi|215265953|emb|CAS10362.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
           str. E2348/69]
 gi|217319075|gb|EEC27500.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli O157:H7 str. TW14588]
 gi|218352890|emb|CAU98689.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
 gi|218355573|emb|CAQ88185.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC
           35469]
 gi|218366226|emb|CAR03973.1| DNA-binding transcriptional repressor [Escherichia coli S88]
 gi|218371027|emb|CAR18854.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
 gi|218428215|emb|CAR09130.2| DNA-binding transcriptional repressor [Escherichia coli ED1a]
 gi|218433131|emb|CAR14027.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
 gi|222034242|emb|CAP76983.1| HTH-type transcriptional regulator iscR [Escherichia coli LF82]
 gi|226901408|gb|EEH87667.1| iscRSUA operon transcriptional regulator [Escherichia sp.
           3_2_53FAA]
 gi|227835917|gb|EEJ46383.1| transcription regulator [Escherichia coli 83972]
 gi|238860965|gb|ACR62963.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|242378131|emb|CAQ32904.1| IscR transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253323617|gb|ACT28219.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974406|gb|ACT40077.1| DNA-binding transcriptional repressor [Escherichia coli B str.
           REL606]
 gi|253978573|gb|ACT44243.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)]
 gi|254593881|gb|ACT73242.1| Fe-S cluster-containing transcription factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|257760308|dbj|BAI31805.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O103:H2 str. 12009]
 gi|260448389|gb|ACX38811.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1]
 gi|281179585|dbj|BAI55915.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281601934|gb|ADA74918.1| HTH-type transcriptional regulator iscR [Shigella flexneri 2002017]
 gi|284922481|emb|CBG35568.1| transcriptional regulator [Escherichia coli 042]
 gi|290763629|gb|ADD57590.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323715|gb|EFE63143.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B088]
 gi|291428180|gb|EFF01207.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           FVEC1412]
 gi|291433447|gb|EFF06426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B185]
 gi|291471414|gb|EFF13898.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B354]
 gi|294489645|gb|ADE88401.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli IHE3034]
 gi|298279215|gb|EFI20729.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           FVEC1302]
 gi|299881341|gb|EFI89552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 196-1]
 gi|300300916|gb|EFJ57301.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 185-1]
 gi|300304032|gb|EFJ58552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 200-1]
 gi|300314520|gb|EFJ64304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 175-1]
 gi|300357946|gb|EFJ73816.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 198-1]
 gi|300396344|gb|EFJ79882.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 69-1]
 gi|300403750|gb|EFJ87288.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 84-1]
 gi|300408859|gb|EFJ92397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 45-1]
 gi|300412338|gb|EFJ95648.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 115-1]
 gi|300416906|gb|EFK00217.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 182-1]
 gi|300449042|gb|EFK12662.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 116-1]
 gi|300454971|gb|EFK18464.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 21-1]
 gi|300461935|gb|EFK25428.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 187-1]
 gi|300841824|gb|EFK69584.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 124-1]
 gi|300843633|gb|EFK71393.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 78-1]
 gi|301073640|gb|EFK88446.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 146-1]
 gi|305851793|gb|EFM52245.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101]
 gi|306906399|gb|EFN36914.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
 gi|307554554|gb|ADN47329.1| iscRSUA operon transcriptional regulator [Escherichia coli ABU
           83972]
 gi|307625914|gb|ADN70218.1| DNA-binding transcriptional regulator IscR [Escherichia coli UM146]
 gi|308927085|gb|EFP72559.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           dysenteriae 1617]
 gi|309702863|emb|CBJ02194.1| transcriptional regulator [Escherichia coli ETEC H10407]
 gi|312289869|gb|EFR17757.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 2362-75]
 gi|312947108|gb|ADR27935.1| DNA-binding transcriptional regulator IscR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313651020|gb|EFS15420.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri 2a str. 2457T]
 gi|315061850|gb|ADT76177.1| DNA-binding transcriptional repressor [Escherichia coli W]
 gi|315137155|dbj|BAJ44314.1| DNA-binding transcriptional repressor [Escherichia coli DH1]
 gi|315256552|gb|EFU36520.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 85-1]
 gi|315288054|gb|EFU47456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 110-3]
 gi|315292493|gb|EFU51845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 153-1]
 gi|315300496|gb|EFU59725.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 16-3]
 gi|315615792|gb|EFU96424.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 3431]
 gi|320180526|gb|EFW55457.1| Iron-sulfur cluster regulator IscR [Shigella boydii ATCC 9905]
 gi|320186422|gb|EFW61152.1| Iron-sulfur cluster regulator IscR [Shigella flexneri CDC 796-83]
 gi|320188870|gb|EFW63529.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196372|gb|EFW70996.1| Iron-sulfur cluster regulator IscR [Escherichia coli WV_060327]
 gi|320640879|gb|EFX10367.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 str. G5101]
 gi|320646322|gb|EFX15249.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H- str. 493-89]
 gi|320651502|gb|EFX19889.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H- str. H 2687]
 gi|320657213|gb|EFX25022.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320667623|gb|EFX34538.1| DNA-binding transcriptional regulator IscR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159301|gb|EFZ45287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E128010]
 gi|323170194|gb|EFZ55847.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli LT-68]
 gi|323188349|gb|EFZ73641.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli RN587/1]
 gi|323377569|gb|ADX49837.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11]
 gi|323936424|gb|EGB32714.1| iron-sulfur cluster assembly transcription protein IscR
           [Escherichia coli E1520]
 gi|323949191|gb|EGB45082.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli H252]
 gi|323955772|gb|EGB51530.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli H263]
 gi|323961347|gb|EGB56959.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli H489]
 gi|323967979|gb|EGB63391.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli M863]
 gi|323971055|gb|EGB66303.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli TA007]
 gi|323977286|gb|EGB72372.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli TW10509]
 gi|324008494|gb|EGB77713.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 57-2]
 gi|324011237|gb|EGB80456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 60-1]
 gi|324113025|gb|EGC07001.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           fergusonii B253]
 gi|324118259|gb|EGC12155.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli E1167]
 gi|325496436|gb|EGC94295.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii
           ECD227]
 gi|326340335|gb|EGD64139.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
           1125]
 gi|326345019|gb|EGD68763.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
           1044]
 gi|327252239|gb|EGE63911.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli STEC_7v]
 gi|330912307|gb|EGH40817.1| iron-sulfur cluster regulator IscR [Escherichia coli AA86]
 gi|331039950|gb|EGI12170.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H736]
 gi|331043089|gb|EGI15229.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli M605]
 gi|331048814|gb|EGI20890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli M718]
 gi|331054344|gb|EGI26371.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA206]
 gi|331059895|gb|EGI31872.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA143]
 gi|331079133|gb|EGI50335.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H299]
 gi|332087982|gb|EGI93107.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           boydii 5216-82]
 gi|332089837|gb|EGI94938.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           dysenteriae 155-74]
 gi|332092768|gb|EGI97837.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           boydii 3594-74]
 gi|332344406|gb|AEE57740.1| iron-sulfur cluster assembly transcription factor protein IscR
           [Escherichia coli UMNK88]
 gi|332754063|gb|EGJ84434.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri 4343-70]
 gi|332754140|gb|EGJ84509.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri K-671]
 gi|332756387|gb|EGJ86738.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri 2747-71]
 gi|333000511|gb|EGK20090.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri VA-6]
 gi|333000908|gb|EGK20479.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri K-218]
 gi|333002329|gb|EGK21893.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri K-272]
 gi|333016152|gb|EGK35484.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri K-227]
 gi|333016465|gb|EGK35796.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           flexneri K-304]
          Length = 162

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|226313931|ref|YP_002773827.1| hypothetical protein BBR47_43460 [Brevibacillus brevis NBRC 100599]
 gi|226096881|dbj|BAH45323.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 132

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  ++Y  A   D P  +  +AE   +S+ +L K+L  LVKAG++ +V G
Sbjct: 1   MKYSQATDYALHAMLYLVAEAPDKPVSVQLLAEKLGVSQTYLSKMLTKLVKAGLIHSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  D I+ LDV++A E +  + EC   H        +C +  V+  A     
Sbjct: 61  ANGGYKLKRNQDDISFLDVIQAIEGTTSLFECSFRHD------SACLIQQVVTDAEQQMM 114

Query: 120 DVLTQYSIECLV 131
             L    I  LV
Sbjct: 115 HTLKSKKIADLV 126


>gi|156932917|ref|YP_001436833.1| DNA-binding transcriptional regulator IscR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|189044748|sp|A7MGX6|ISCR_ENTS8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|156531171|gb|ABU75997.1| hypothetical protein ESA_00720 [Cronobacter sakazakii ATCC BAA-894]
          Length = 162

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A QI + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|108803666|ref|YP_643603.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764909|gb|ABG03791.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 150

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK++ Y +R L+   +     P  +S+IA    I E FL +I   L +AGI+E+ RG
Sbjct: 1   MRLTKKSKYAVRALVEVVLRGSGGPVGVSEIARRQRIPERFLEQIFGELRRAGILESHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG     P +++T+LD+V+  +     A C A           C  + V  +A  A  
Sbjct: 61  AHGGYSFSMPPEEVTVLDIVEVLDGEIRPARCSAGGVCYIDDAPLCSTSRVWDEARVALE 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            V  +YSI  L      I+
Sbjct: 121 GVFGRYSIAQLAAAEREIR 139


>gi|83858482|ref|ZP_00952004.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853305|gb|EAP91157.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 155

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A  + + P  +  IA    IS  +L ++   L +AG+V++VRG
Sbjct: 1   MKLSTKGRYAVMAMVDLAQASLEKPVPLGDIASRQEISLSYLEQLFAKLRRAGVVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L RP  +  I D++ A EE   V  C             C    +  +      
Sbjct: 61  PGGGYKLARPLGETRIADIMLAVEEPVDVTRCQGKATGCLESGRRCITHDLWDELSRHIH 120

Query: 120 DVLTQYSIECLVRNR 134
             L   ++E ++  R
Sbjct: 121 LFLNDVTLEDVLERR 135


>gi|163942148|ref|YP_001647032.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229013616|ref|ZP_04170747.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
 gi|229019620|ref|ZP_04176432.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
 gi|229025860|ref|ZP_04182256.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
 gi|229062093|ref|ZP_04199418.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
 gi|229135221|ref|ZP_04264020.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
 gi|229169141|ref|ZP_04296856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
 gi|163864345|gb|ABY45404.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
 gi|228614369|gb|EEK71479.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
 gi|228648263|gb|EEL04299.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
 gi|228717245|gb|EEL68920.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
 gi|228735412|gb|EEL86011.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
 gi|228741668|gb|EEL91856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
 gi|228747675|gb|EEL97547.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
          Length = 138

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A    + P  +  IA+A  +SE +L +++ PL  A +V++ RG
Sbjct: 1   MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      IT  DV++  E    V E     +             +  +  +A  
Sbjct: 61  AYGGYVLSDQPVNITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E LVR
Sbjct: 113 EVLDSTTLEDLVR 125


>gi|298246146|ref|ZP_06969952.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553627|gb|EFH87492.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 174

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKA--GIVETVR 58
            ++ + +YG+R+++  A H    P  ++ I++A  +   +L ++++ L  A   +V + R
Sbjct: 3   RVSTKGEYGVRIMVDLARHYGGRPRSLTDISQAETLPLAYLEQLVKLLRDADPPLVSSTR 62

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALN 116
           G  GG RL R  ++I++ ++V+  E       C    ++   C  + SC    +  +  +
Sbjct: 63  GAHGGYRLNRDPNEISMGEIVRVLEGPISPMICATEGEMSQICGFIDSCKTKYLWARVRD 122

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A    L   ++  LV   + 
Sbjct: 123 AVAQTLDSITLAELVAQTAE 142


>gi|255319821|ref|ZP_05361026.1| HTH-type transcriptional regulator NsrR [Acinetobacter
           radioresistens SK82]
 gi|262380353|ref|ZP_06073507.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303140|gb|EET82352.1| HTH-type transcriptional regulator NsrR [Acinetobacter
           radioresistens SK82]
 gi|262297799|gb|EEY85714.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 149

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R LMY +   + P  I++IA    IS   L KI+  + K G + T+RG+
Sbjct: 1   MQLNKFTDYALRSLMYISRPRNTPYTIAEIAVDLQISHNHLVKIVHFMGKQGWLITLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L   A    + D+V+  +    + EC   +   C L   CGL  +L  A+  F+ 
Sbjct: 61  GGGIQLNPQALDSRVGDIVRILQGDQPIVEC---NSPPCVLRSDCGLKGILDTAVEQFYQ 117

Query: 121 VLTQYSIECLVR 132
            L QY++  ++ 
Sbjct: 118 SLNQYTLGQVLN 129


>gi|210611516|ref|ZP_03288936.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
 gi|319936514|ref|ZP_08010929.1| cysteine desulfurase [Coprobacillus sp. 29_1]
 gi|210151963|gb|EEA82970.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
 gi|319808406|gb|EFW04961.1| cysteine desulfurase [Coprobacillus sp. 29_1]
          Length = 135

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RVL+  A  +      + +IA+   ISE +L +I++ LV  G++  + G+ 
Sbjct: 2   ISTKGRYALRVLIDLAEQDTTTYVPLKEIAKRQGISEKYLQQIVKILVGKGLLTGISGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL    ++  + ++++  E S     C A     C     C    + +K  N   D 
Sbjct: 62  GGYRLTASPEEYNVGEILELMEGSLTPVACLAPDTKTCSRSSHCKTLPMWKKFDNLVHDY 121

Query: 122 LTQYSIECLVR 132
               +I  LV 
Sbjct: 122 FFHITIADLVN 132


>gi|83721287|ref|YP_442725.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|83655112|gb|ABC39175.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 180

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 16  MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+  VV+ TE  F +  CF        +C +  +C L  V   A  A
Sbjct: 76  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 135

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 136 FFAELDKHTIGELAQPASQLSMLLG 160


>gi|288934077|ref|YP_003438136.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Klebsiella variicola At-22]
 gi|290508273|ref|ZP_06547644.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           sp. 1_1_55]
 gi|288888806|gb|ADC57124.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
           At-22]
 gi|289777667|gb|EFD85664.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           sp. 1_1_55]
          Length = 163

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R       
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEIL 136


>gi|262377318|ref|ZP_06070542.1| transcriptional regulator [Acinetobacter lwoffii SH145]
 gi|262307771|gb|EEY88910.1| transcriptional regulator [Acinetobacter lwoffii SH145]
          Length = 146

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K TDY +R+LMY A   D P  I+++AE   +S+    KI+  + K   + T RG+
Sbjct: 1   MQLNKFTDYALRILMYVAQPRDLPYTIAELAERLQVSQNHAMKIVHFMAKQDWLITTRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + +  + +  +V+  +    V EC   +   C L  +CGL  +L  A+  F+ 
Sbjct: 61  GGGIRLNQASLNLQLGQIVRILQRDSNVVEC---NSPPCVLRPTCGLKGILDDAVEQFYS 117

Query: 121 VLTQYSIECLVRNRS 135
            L QY ++ ++  R+
Sbjct: 118 SLDQYVLKDVITPRN 132


>gi|189220122|ref|YP_001940762.1| transcriptional regulator YrzC [Methylacidiphilum infernorum V4]
 gi|189186980|gb|ACD84165.1| Putative transcriptional regulator YrzC [Methylacidiphilum
           infernorum V4]
          Length = 154

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTKR+ Y IR L+Y A         I +IAE   I + FL  IL  L   G + + RG
Sbjct: 1   MFLTKRSKYAIRALLYLAKEQQRGTILIQEIAEKEKIPKKFLESILLELKNNGFLSSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKAL 115
           + GG  L  P ++I I  V++  +       C +        DC    +C +  ++++  
Sbjct: 61  KGGGYALEYPPEKIPIGSVIRLIDGPLAPVRCVSQTAYAPCEDCLDEKTCVIRLLMKETR 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
           +    VL + S++ L++  S +K
Sbjct: 121 DVISTVLDKTSLKELLQKESQLK 143


>gi|313620173|gb|EFR91654.1| putative transcriptional regulator [Listeria innocua FSL S4-378]
          Length = 138

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKAG VE+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA+ I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPANSISFLDVIQAIEGKAAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQAVGSIV 130


>gi|291523627|emb|CBK81920.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
           GD/7]
          Length = 140

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RV+ Y A++ D     + +IAEA  IS  +L  I + L K   +E   GR 
Sbjct: 4   ISSKGRYALRVMTYLAVNADREFVPLKEIAEAESISLKYLESIARMLSKEHYIEGTSGRG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R  +   + D+++ TE +     C   +   C     C    V +   N   D 
Sbjct: 64  GGYHLTRKPEAYKVGDILRLTEGTLAPVSCLKDNAEPCGRAELCCTLPVWQGLSNVITDY 123

Query: 122 LTQYSIECLV 131
           L   ++  + 
Sbjct: 124 LDNMTLADVA 133


>gi|326316430|ref|YP_004234102.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373266|gb|ADX45535.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 168

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  I+++A    IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL  PA  I + DVV+ TE  F + ECF      C L G C L   L +A  +F
Sbjct: 61  GRGGGLRLRVPAADIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSF 120

Query: 119 FDVLTQYSIECLVRNRSS 136
             VL   ++  LV   ++
Sbjct: 121 LAVLDGVTLADLVARPAA 138


>gi|288961940|ref|YP_003452250.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914220|dbj|BAI75706.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 150

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++  Y +R L+  A  +      I+ IAE   I   FL  IL  L K G++   RG+ 
Sbjct: 2   LSQKAKYALRALIMLAEKDTGDLILIADIAERENIPRKFLEAILVELRKEGLLFAKRGKS 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +IT  +V++  +       C +        DC    +C +  ++ +  +A
Sbjct: 62  GGYRLARPAAEITFGEVIRLIDGHLAPIPCASKASFRPCEDCIDTATCSVRWLMVQVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              VL   ++   +R+R S   I
Sbjct: 122 TAAVLDNRTLADALRHRQSTGNI 144


>gi|270308844|ref|YP_003330902.1| transcriptional regulator [Dehalococcoides sp. VS]
 gi|270154736|gb|ACZ62574.1| transcriptional regulator [Dehalococcoides sp. VS]
          Length = 148

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  + +  +   A+H  + P  I  +A+   ISE +L ++  PL  AG+V +VRG
Sbjct: 1   MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + D+VKATE S   +EC    ++ C     C   +V  K   A  
Sbjct: 61  ANGGFVLARDPKEIRLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLKIKKATD 119

Query: 120 DVLTQYSIECLVRN 133
           ++L   ++E LV+ 
Sbjct: 120 EILDSINLENLVQQ 133


>gi|331673987|ref|ZP_08374750.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA280]
 gi|331069260|gb|EGI40652.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA280]
          Length = 162

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|302878002|ref|YP_003846566.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
 gi|302580791|gb|ADL54802.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
           capsiferriformans ES-2]
          Length = 143

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TD  +R L+Y     +    I+++++A  I +  L K++  LV AG+V + RGR
Sbjct: 1   MQLNLSTDIALRTLIYLGQKKET-ATIAEVSDAFDIVKTHLMKVVMQLVAAGVVVSERGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL R   +I + DVV+  E +  +  C  +   D  CPL+ +C L ++L  A  AF
Sbjct: 60  NGGIRLARNPAEIVVGDVVRLMENNLALLYCMKTDAPDDCCPLMPNCHLRTILFNAQKAF 119

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++  L+ +
Sbjct: 120 LDTLDGNTLADLLPD 134


>gi|74313057|ref|YP_311476.1| DNA-binding transcriptional regulator IscR [Shigella sonnei Ss046]
 gi|157162006|ref|YP_001459324.1| DNA-binding transcriptional regulator IscR [Escherichia coli HS]
 gi|170019186|ref|YP_001724140.1| DNA-binding transcriptional regulator IscR [Escherichia coli ATCC
           8739]
 gi|191169254|ref|ZP_03031006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B7A]
 gi|193068431|ref|ZP_03049394.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E110019]
 gi|209920008|ref|YP_002294092.1| DNA-binding transcriptional regulator IscR [Escherichia coli SE11]
 gi|218555056|ref|YP_002387969.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI1]
 gi|256017320|ref|ZP_05431185.1| DNA-binding transcriptional regulator IscR [Shigella sp. D9]
 gi|260856625|ref|YP_003230516.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O26:H11 str. 11368]
 gi|260869220|ref|YP_003235622.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O111:H- str. 11128]
 gi|300817699|ref|ZP_07097914.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 107-1]
 gi|300820799|ref|ZP_07100949.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 119-7]
 gi|309794422|ref|ZP_07688845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 145-7]
 gi|331669279|ref|ZP_08370127.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA271]
 gi|331678524|ref|ZP_08379199.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H591]
 gi|332278315|ref|ZP_08390728.1| DNA-binding transcriptional repressor [Shigella sp. D9]
 gi|119371152|sp|Q3YZ21|ISCR_SHISS RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044744|sp|A8A337|ISCR_ECOHS RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044746|sp|B1IWD0|ISCR_ECOLC RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711613|sp|B7M7N4|ISCR_ECO8A RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711616|sp|B6I5A3|ISCR_ECOSE RecName: Full=HTH-type transcriptional regulator iscR
 gi|73856534|gb|AAZ89241.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|157067686|gb|ABV06941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli HS]
 gi|169754114|gb|ACA76813.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC
           8739]
 gi|190900707|gb|EDV60504.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli B7A]
 gi|192958383|gb|EDV88823.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli E110019]
 gi|209913267|dbj|BAG78341.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218361824|emb|CAQ99422.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
 gi|257755274|dbj|BAI26776.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O26:H11 str. 11368]
 gi|257765576|dbj|BAI37071.1| DNA-binding transcriptional repressor IscR [Escherichia coli
           O111:H- str. 11128]
 gi|300526552|gb|EFK47621.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 119-7]
 gi|300529687|gb|EFK50749.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 107-1]
 gi|308121878|gb|EFO59140.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 145-7]
 gi|320200095|gb|EFW74684.1| Iron-sulfur cluster regulator IscR [Escherichia coli EC4100B]
 gi|323156187|gb|EFZ42346.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli EPECa14]
 gi|323169392|gb|EFZ55068.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
           sonnei 53G]
 gi|323177344|gb|EFZ62932.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli 1180]
 gi|323941207|gb|EGB37392.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
           coli E482]
 gi|323944588|gb|EGB40656.1| iron-sulfur cluster assembly transcription protein IscR
           [Escherichia coli H120]
 gi|324020053|gb|EGB89272.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli MS 117-3]
 gi|331064473|gb|EGI36384.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli TA271]
 gi|331074984|gb|EGI46304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
           coli H591]
 gi|332100667|gb|EGJ04013.1| DNA-binding transcriptional repressor [Shigella sp. D9]
          Length = 162

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|313639464|gb|EFS04318.1| putative transcriptional regulator [Listeria seeligeri FSL S4-171]
          Length = 138

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA  I+ LDV++A E       C    K        C +  V+  A     
Sbjct: 61  VNGGYKLAKPATNISFLDVIQAIEGKTAFFHC--DPKNHAETKPHCLIGEVMGNAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L+  +I  +V
Sbjct: 119 DYLSNQTIGSIV 130


>gi|47096299|ref|ZP_00233896.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254830378|ref|ZP_05235033.1| hypothetical protein Lmon1_03417 [Listeria monocytogenes 10403S]
 gi|254900131|ref|ZP_05260055.1| hypothetical protein LmonJ_09970 [Listeria monocytogenes J0161]
 gi|254911315|ref|ZP_05261327.1| Rrf2 family protein [Listeria monocytogenes J2818]
 gi|254935642|ref|ZP_05267339.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|47015344|gb|EAL06280.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608223|gb|EEW20831.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|293589246|gb|EFF97580.1| Rrf2 family protein [Listeria monocytogenes J2818]
          Length = 138

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  +E+V G
Sbjct: 1   MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|300022521|ref|YP_003755132.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524342|gb|ADJ22811.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 145

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +RVLMY     D    I +IA+   ISE  L K++  L + G V+T+RGR
Sbjct: 1   MRLTVHSDYALRVLMYLGAREDRLATIQEIAKVYAISENHLMKVVNKLARHGFVKTLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL RPA+ +TI +V++  EE F V ECF    + C +  SC L   LR+A++AF  
Sbjct: 61  GGGLRLGRPAEDLTIGEVLRVVEEDFHVVECFGESNM-CRISQSCRLRLALRRAIDAFLA 119

Query: 121 VLTQYSIECLVRNRSSI 137
            L ++++  ++ NR+SI
Sbjct: 120 ELDEWTLADILSNRNSI 136


>gi|206579114|ref|YP_002237116.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           pneumoniae 342]
 gi|226711620|sp|B5XNJ6|ISCR_KLEP3 RecName: Full=HTH-type transcriptional regulator iscR
 gi|206568172|gb|ACI09948.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           pneumoniae 342]
          Length = 163

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R       
Sbjct: 61  PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEIL 136


>gi|148556886|ref|YP_001264468.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502076|gb|ABQ70330.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 137

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++RT Y IR L++ A  H + P ++++IAE   I   FL  IL  + +AG VET+RG+ 
Sbjct: 2   LSQRTRYAIRALLHLADHHGEGPIQLAEIAERQNIPAKFLTVILSEMKRAGFVETMRGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +IT  D+V+AT  S  +  C A         C     C L  V+    + 
Sbjct: 62  GGYWLSRAPTEITYGDIVRATRGSLALVPCAARLAYTPCDHCIDETECRLRGVMLSVRDE 121

Query: 118 FFDVLTQYSIEC 129
              +L Q S+  
Sbjct: 122 TAKILDQLSLAE 133


>gi|163786651|ref|ZP_02181099.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878511|gb|EDP72567.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 136

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L+Y A      P +IS+I+++  IS  FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALVYLAKQKKRDPVQISEISKSENISRKFLESILLTLRKNGILGSKKGKN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  ++I +  +++  E    +  C    F     DCP   +C + +V+ K  + 
Sbjct: 62  GGYYLLKEPNEIPMTSIMRLLEGPIAMVPCVSLNFYEKCDDCPDENACAVHNVMLKVRDN 121

Query: 118 FFDVLTQYSIECL 130
             D+    ++  L
Sbjct: 122 TLDIFRNTTLADL 134


>gi|154253702|ref|YP_001414526.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154157652|gb|ABS64869.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 164

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT +  Y +  +   A H+   P  +++IA+   IS  +L ++   L +  +V++VRG 
Sbjct: 7   KLTTKGRYAVMAMADLARHSSGSPVALAEIADRQEISLSYLEQLFAKLRRGDLVKSVRGP 66

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119
            GG  L R AD I I DV+ A +E      C       C P  G C    +     +   
Sbjct: 67  GGGYLLSREADSIRISDVILAVDEPIKATRCDLGSPKGCMPSSGRCITHDLWEGLSHQIQ 126

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L   S+  ++  R + K  F+A
Sbjct: 127 LYLGSVSLGDVIDGRIAGKSAFDA 150


>gi|237732511|ref|ZP_04562992.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
 gi|283832088|ref|ZP_06351829.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter
           youngae ATCC 29220]
 gi|226908050|gb|EEH93968.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
 gi|291071714|gb|EFE09823.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter
           youngae ATCC 29220]
          Length = 163

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|289803176|ref|ZP_06533805.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 155

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|254504883|ref|ZP_05117034.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
 gi|222440954|gb|EEE47633.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
          Length = 144

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+LM  +  +D P  + ++     +++  + KI+  L KAG +ET RGR
Sbjct: 9   MRLSQASDFALRLLMAIS-QSDAPQTVDKLTAQLGLAKSHVMKIVAQLAKAGYLETTRGR 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+ + AD I I DVV+  E    V  C       CP +  C L   + +A  AF D
Sbjct: 68  GGGIRIAKEADDIRIGDVVRLIEPDLGVVACLKDEPASCPFLPRCALKGAMARATEAFLD 127

Query: 121 VLTQYSIECLVRNRSSI 137
            L + ++  ++     I
Sbjct: 128 SLNEQTLGSILAGTQKI 144


>gi|315645813|ref|ZP_07898934.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315278574|gb|EFU41888.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 139

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT  DV++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILSRDPATITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +++ L+ 
Sbjct: 113 EVLDSTTLDYLIN 125


>gi|260892331|ref|YP_003238428.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
 gi|260864472|gb|ACX51578.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
          Length = 154

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R LM  A H    P  +  +A    ISE +L ++   L  AG++ ++RG
Sbjct: 1   MKLSTRIRYGVRALMDIAEHGTAGPVSLKDVARRQGISEQYLEQLALLLKGAGLIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I + ++V+       + +C    ++ C     C +  V R+A  AF 
Sbjct: 61  AHGGFVLSRQATEIRLSEIVEILGGPIKLVDCLYDQEV-CTRADCCAVRDVWREANEAFR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           +VL   ++  LV  +  
Sbjct: 120 NVLAAVTLADLVERQRK 136


>gi|157144531|ref|YP_001451850.1| DNA-binding transcriptional regulator IscR [Citrobacter koseri ATCC
           BAA-895]
 gi|189044742|sp|A8AD51|ISCR_CITK8 RecName: Full=HTH-type transcriptional regulator iscR
 gi|157081736|gb|ABV11414.1| hypothetical protein CKO_00250 [Citrobacter koseri ATCC BAA-895]
          Length = 163

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|119945067|ref|YP_942747.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
           ingrahamii 37]
 gi|119863671|gb|ABM03148.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
           ingrahamii 37]
          Length = 158

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AI     P  ++ I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
             GG +L +   QI++  ++ A  ES  V +C    K  C   G  C   S+  +  +  
Sbjct: 61  PGGGYKLGKERHQISVAMIIDAVNESVDVRKC--GGKGGCAEDGVQCLTHSLWAQLSDRI 118

Query: 119 FDVLTQYSIECLV 131
              L   ++E L+
Sbjct: 119 STFLDNITLEELM 131


>gi|237747556|ref|ZP_04578036.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229378918|gb|EEO29009.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 155

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++    H +  P  ++ I+E   IS  +L ++   L +  +V+++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLTRHQETGPVSLAGISERQDISVAYLEQLFSKLRRKNLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
             GG  L   A  IT+ D+V A +E   V  C      +C      C   ++        
Sbjct: 61  PGGGYILANDAADITVADIVFAVDEPLDVTRC--GGNGNCARGSIKCISHNLWASLNEKI 118

Query: 119 FDVLTQYSIECL 130
            D L    +  L
Sbjct: 119 IDYLESVPLSEL 130


>gi|291485160|dbj|BAI86235.1| hypothetical protein BSNT_03994 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 139

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG 
Sbjct: 3   KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L    D IT  D+++  E      E     +             +  +  +A  +
Sbjct: 63  YGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEP--------AKRELWIRIRDAVKE 114

Query: 121 VLTQYSIECLV 131
           VL   ++E L 
Sbjct: 115 VLDSTTLEDLA 125


>gi|167581669|ref|ZP_02374543.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
          Length = 165

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+  VV+ TE  F +  CF        +C +  +C L  V   A  A
Sbjct: 61  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145


>gi|283786146|ref|YP_003366011.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282949600|emb|CBG89219.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 163

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|224824735|ref|ZP_03697842.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224603228|gb|EEG09404.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 153

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RVLMY      D P  I +IAE   +S   L K++  + + G + T RG
Sbjct: 1   MQLTRFTDLGLRVLMYLTHRERDTPVTIPEIAERFAVSRNHLVKVVHFMAQQGWLVTTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L RPAD   + DV++  E    + +C    +  C L   C L S L   L AFF
Sbjct: 61  KGGGLALARPADHYRLGDVIRTLEGMSDLIDCA---EPPCALRSGCQLKSALDVGLTAFF 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + L ++++   V   + 
Sbjct: 118 EALNRFTLASAVAAPTG 134


>gi|114778698|ref|ZP_01453510.1| Iron-sulphur cluster assembly transcription factor IscR
           [Mariprofundus ferrooxydans PV-1]
 gi|114551060|gb|EAU53622.1| Iron-sulphur cluster assembly transcription factor IscR
           [Mariprofundus ferrooxydans PV-1]
          Length = 166

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++      ND P  ++ I+E   IS  +L ++ + L + G+V +VRG
Sbjct: 1   MRLTSKGRYAVSAMVDLNKQQNDGPVTLAAISERQFISLSYLEQLFRRLRENGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I+I D+++A  E      C  +    C     C    +        +
Sbjct: 61  PGGGYLLAKDAVDISIADIIRAVNEPVRTTMC-ENGVRGCHRGNRCDTHQLWESLGQHIY 119

Query: 120 DVLTQYSIECLVRN 133
             L   S+  +   
Sbjct: 120 RFLDAVSLAKVCER 133


>gi|294054903|ref|YP_003548561.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614236|gb|ADE54391.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 145

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RVL+Y     +  + I ++AE   +S   + KI++ L   G +ET+RG+
Sbjct: 1   MELTSFTDYSLRVLIYLTHDRERLSSIDELAEFYGLSRHHVAKIVKRLADLGYLETLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL    + I I +V+K TE  F + EC        C + G C L   L  A + FF
Sbjct: 61  NGGLRLGAEPESINIAEVIKGTEPHFNLVECMGGASDTACMIDGHCKLKGALAVARSHFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L +YS+  +     S + +
Sbjct: 121 KHLAEYSLADVALTEDSSRAV 141


>gi|161502301|ref|YP_001569413.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189044750|sp|A9MHJ3|ISCR_SALAR RecName: Full=HTH-type transcriptional regulator iscR
 gi|160863648|gb|ABX20271.1| hypothetical protein SARI_00332 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 164

 Score =  143 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|296136896|ref|YP_003644138.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
 gi|295797018|gb|ADG31808.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
           K12]
          Length = 146

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 63/129 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D+G+R L+  A          ++A    IS   L K+LQ L   G V+T RG 
Sbjct: 1   MRLTSFSDFGLRALLVLAGSERETWSSVELAAKLDISRDHLIKVLQRLAAGGYVQTTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I I +V++  E+   + ECF      C L G C L   L +A  AF+ 
Sbjct: 61  GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120

Query: 121 VLTQYSIEC 129
            L + ++  
Sbjct: 121 ALNETTLAD 129


>gi|295094646|emb|CBK83737.1| rrf2 family protein (putative transcriptional regulator)
           [Coprococcus sp. ART55/1]
          Length = 144

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 69/136 (50%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  +I++     +  +A  C +S+ +L ++   L+KAG + +VRG 
Sbjct: 1   MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL  PA++IT+  V++A E      +       D  +V +  +  V     +A  +
Sbjct: 61  RGGYRLNMPAEEITVGMVLRAIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLESAINN 120

Query: 121 VLTQYSIECLVRNRSS 136
           VL   +I  L R  S 
Sbjct: 121 VLDNKTIADLTREYSD 136


>gi|261415306|ref|YP_003248989.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371762|gb|ACX74507.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327324|gb|ADL26525.1| transcriptional regulator, Rrf2 family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 146

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  Y IRV++  A + +   + +  +AE   +SE +L  IL  LVK  ++E  RG
Sbjct: 1   MRESTKGRYAIRVIIDMAENGESEFHPLHNLAERQGLSEKYLEAILGVLVKNNVLEGARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +PA ++T+ +++   E S    EC A  K  C     C    + +       
Sbjct: 61  KGGGYKLAKPAAELTVWEILSVIETSISPVECVADGKNGCDRADVCPTLPMWKDLAKIIK 120

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D  T  +IE L R    I +  
Sbjct: 121 DYFTGITIEQLARKAPKIARPL 142


>gi|254994481|ref|ZP_05276671.1| hypothetical protein LmonocytoFSL_16972 [Listeria monocytogenes FSL
           J2-064]
          Length = 143

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|253583197|ref|ZP_04860395.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
 gi|251833769|gb|EES62332.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
          Length = 140

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+R L Y A  +      RI +IA+   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTKVRYGLRALAYIAEKSGEGKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +  ++IT+  + K  +E   V +C     HK  C    +CG T +  K  +
Sbjct: 61  GPNGGYRLAKEPNEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGSTCIWSKLDS 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + ++   ++N+  I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140


>gi|77919457|ref|YP_357272.1| putative Fe-S cluster regulator protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77545540|gb|ABA89102.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 147

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +R ++  ++ + D P     IA+   IS  FL +IL  L +  IV +VRG
Sbjct: 1   MRLSTKAQYAVRAMVRLSLENADTPVSSKAIADLEGISVTFLEQILAKLRRGKIVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA++I + +++++ EE+     C      +C     C    V     +   
Sbjct: 61  PGGGFVLARPAEEIRVDEIIESVEEALMPVACM-DETGECQCEELCFTHMVWAGLGHRIK 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L   +++ L R  S I++
Sbjct: 120 KFLASITLDELSREASVIRQ 139


>gi|23015553|ref|ZP_00055325.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 151

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A H    P  I+ IA++  I + FL  IL  +    ++ + +G+ 
Sbjct: 4   LSSKAKYGLKAMVYLARHEGLGPVLIADIAQSERIPKKFLDAILLEMKNQKLLSSKKGKG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L  PA +I + D+V+  +       C +        DC    +C + +V++   +A
Sbjct: 64  GGYTLAMPAARIMVGDIVRVLDGPLAPVSCVSRSAYRACDDCTDEAACTIRAVMQDVRDA 123

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
              +L   ++  +   R   + + 
Sbjct: 124 IAAILDNTTLADMANRRGRPEPVL 147


>gi|146312669|ref|YP_001177743.1| DNA-binding transcriptional regulator IscR [Enterobacter sp. 638]
 gi|189044747|sp|A4WDB2|ISCR_ENT38 RecName: Full=HTH-type transcriptional regulator iscR
 gi|145319545|gb|ABP61692.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
          Length = 163

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|261405438|ref|YP_003241679.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261281901|gb|ACX63872.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 139

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT  DV++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +++ L+ 
Sbjct: 113 EVLDSTTLDYLIN 125


>gi|30249423|ref|NP_841493.1| hypothetical protein NE1452 [Nitrosomonas europaea ATCC 19718]
 gi|30138786|emb|CAD85363.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
           19718]
          Length = 159

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  L+  AI H + P  ++ I+E   IS  +L ++   L +  +V++VRG
Sbjct: 1   MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLRQRKLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D++++ D++ A +E     +C    K +C     C    +  K     F
Sbjct: 61  PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWAKLNEIIF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ LV  +S 
Sbjct: 119 DYLGHVTLKRLVEEQSQ 135


>gi|88813391|ref|ZP_01128628.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
           mobilis Nb-231]
 gi|88789357|gb|EAR20487.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
           mobilis Nb-231]
          Length = 155

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A+H +  P  ++ I++   IS  +L ++   L +A +V  VRG
Sbjct: 1   MKLSTKGRYAVTAMLDLALHENRGPVILADISQGQGISLSYLEQLFARLRRARLVTGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  IT+ DV+ A +++      +            C    +  +     +
Sbjct: 61  PGGGYRLARPAQVITVADVIVAVDDNGDALGGYEGKLN----GAHCLTHDLWSELSAQIY 116

Query: 120 DVLTQYSIECLVRNRS 135
           D L   ++  L    S
Sbjct: 117 DFLNGITLADLASESS 132


>gi|256005574|ref|ZP_05430534.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|255990482|gb|EEU00604.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 2360]
 gi|316941505|gb|ADU75539.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 149

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A++ N     ++ IAE   IS  +L ++   L K+G+V++ +G
Sbjct: 1   MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
            +GG  L      I +  +++A E    V +       +       C   +V  K   + 
Sbjct: 61  AQGGYMLSEDPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            +++   ++E L  +      I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142


>gi|167619786|ref|ZP_02388417.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
 gi|257138937|ref|ZP_05587199.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 165

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+  VV+ TE  F +  CF        +C +  +C L  V   A  A
Sbjct: 61  NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145


>gi|325286870|ref|YP_004262660.1| BadM/Rrf2 family transcriptional regulator [Cellulophaga lytica DSM
           7489]
 gi|324322324|gb|ADY29789.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga lytica
           DSM 7489]
          Length = 135

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P  I +IA+   IS+ FL  IL  L + G++ + +G+ 
Sbjct: 2   LSKKTKYGLKALTYLAQKEDRNPVPIGEIAQQNNISQKFLESILLMLRRTGVLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I + DV++  E    +  C    F     DCP  G+C +  ++ K  ++
Sbjct: 62  GGYYLIKEPSEILMTDVIRVLEGPIAMVPCVSLNFYEKCDDCPDEGTCSVHKLMLKVRDS 121

Query: 118 FFDVLTQYSIECLV 131
             ++    ++  L+
Sbjct: 122 ALEIYKNTTLSNLI 135


>gi|311278538|ref|YP_003940769.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
 gi|308747733|gb|ADO47485.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           SCF1]
          Length = 163

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|295097923|emb|CBK87013.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 163

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|294341067|emb|CAZ89464.1| putative Transcriptional regulator [Thiomonas sp. 3As]
          Length = 146

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 63/129 (48%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D+G+R L+  A          ++A    IS   L K+LQ L   G V+T RG 
Sbjct: 1   MRLTSFSDFGLRALLVLAGSERETWSSVELATKLDISRDHLIKVLQRLAAGGYVQTTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A  I I +V++  E+   + ECF      C L G C L   L +A  AF+ 
Sbjct: 61  GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120

Query: 121 VLTQYSIEC 129
            L + ++  
Sbjct: 121 ALNETTLAD 129


>gi|149197247|ref|ZP_01874299.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
 gi|149139793|gb|EDM28194.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
          Length = 132

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L++ A + +     ++++E   I++  + +I+  L K G +   RGR
Sbjct: 1   MRLNLKTDYALRILLHAAKNKEKLITSTEVSERYNITQANVTQIVNALKKKGYLNVKRGR 60

Query: 61  -RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P +++ I +++K  E    + +CF + +  CP++ SC L  ++   LNAF 
Sbjct: 61  YGGGFTLSDPPEEMRIGNIIKDIEPDLDLVQCFNNERNTCPVIDSCKLAGLMYSGLNAFL 120

Query: 120 DVLTQYSIECLV 131
           + + + ++  ++
Sbjct: 121 EKMNEQTLADII 132


>gi|329926792|ref|ZP_08281200.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
 gi|328938992|gb|EGG35360.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
          Length = 139

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT  DV++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIA 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +++ L+ 
Sbjct: 113 EVLDSTTLDYLIN 125


>gi|289434795|ref|YP_003464667.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171039|emb|CBH27581.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633162|gb|EFS00046.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
 gi|313637744|gb|EFS03103.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
          Length = 140

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    + P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSSIK 138
           DVL Q ++  L+++ S  +
Sbjct: 113 DVLDQTTLSDLLKHNSDTE 131


>gi|16803555|ref|NP_465040.1| hypothetical protein lmo1515 [Listeria monocytogenes EGD-e]
 gi|224499825|ref|ZP_03668174.1| hypothetical protein LmonF1_09119 [Listeria monocytogenes Finland
           1988]
 gi|224501545|ref|ZP_03669852.1| hypothetical protein LmonFR_03342 [Listeria monocytogenes FSL
           R2-561]
 gi|254828251|ref|ZP_05232938.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829726|ref|ZP_05234381.1| hypothetical protein Lmon1_00155 [Listeria monocytogenes 10403S]
 gi|254898319|ref|ZP_05258243.1| hypothetical protein LmonJ_00850 [Listeria monocytogenes J0161]
 gi|254912189|ref|ZP_05262201.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936517|ref|ZP_05268214.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255025787|ref|ZP_05297773.1| hypothetical protein LmonocytFSL_04615 [Listeria monocytogenes FSL
           J2-003]
 gi|284801905|ref|YP_003413770.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
 gi|284995047|ref|YP_003416815.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
 gi|16410944|emb|CAC99593.1| lmo1515 [Listeria monocytogenes EGD-e]
 gi|258600639|gb|EEW13964.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609111|gb|EEW21719.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057467|gb|ADB68408.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
 gi|284060514|gb|ADB71453.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
 gi|293590162|gb|EFF98496.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|313623689|gb|EFR93841.1| Rrf2 family protein [Listeria innocua FSL J1-023]
          Length = 140

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|261340842|ref|ZP_05968700.1| iron-sulfur cluster assembly transcription factor IscR
           [Enterobacter cancerogenus ATCC 35316]
 gi|288317268|gb|EFC56206.1| iron-sulfur cluster assembly transcription factor IscR
           [Enterobacter cancerogenus ATCC 35316]
          Length = 163

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|197251434|ref|YP_002147499.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|226711621|sp|B5F1C1|ISCR_SALA4 RecName: Full=HTH-type transcriptional regulator iscR
 gi|197215137|gb|ACH52534.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 164

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|78355282|ref|YP_386731.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217687|gb|ABB37036.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 220

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ RT Y  R+L+  A H  D P   S ++E   +S  F+ +I++PL KA ++ +VRG
Sbjct: 52  MKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPLKKAKLINSVRG 111

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +IT+  +V   E    + +C   +++ C    +C       +      
Sbjct: 112 AAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNEL-CTRTPTCKTRVAWLRISEVLE 170

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++E L+    
Sbjct: 171 RELNSITLEDLMSGEH 186


>gi|315282426|ref|ZP_07870843.1| Rrf2 family protein [Listeria marthii FSL S4-120]
 gi|313613931|gb|EFR87658.1| Rrf2 family protein [Listeria marthii FSL S4-120]
          Length = 140

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|42780147|ref|NP_977394.1| hypothetical protein BCE_1071 [Bacillus cereus ATCC 10987]
 gi|42736065|gb|AAS40002.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 168

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|318607414|emb|CBY28912.1| nitrite-sensitive transcriptional repressor NsrR [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 125

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       ISQ+ E   +S   + KI+  L + G+V  VRG+ GG+RL +PADQI I D
Sbjct: 3   SLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L  VL +A+ +F + L  Y++  +V++ + +
Sbjct: 63  VVRQLE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVQDNTPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|315301845|ref|ZP_07872874.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
 gi|313629782|gb|EFR97886.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
          Length = 138

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKTVGVKELAIKQNVSPTYLSKVLTMLVKASFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA+ I+ LDV++A E       C    K        C +  V+  A     
Sbjct: 61  VNGGYKLAKPANDISFLDVIQAIEGKTAFFHC--DPKNHAESKPHCLIGEVMDNAEQQME 118

Query: 120 DVLTQYSIECLV 131
             L++ +I  +V
Sbjct: 119 AYLSEQTIGSIV 130


>gi|326790786|ref|YP_004308607.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium lentocellum DSM 5427]
 gi|326541550|gb|ADZ83409.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           lentocellum DSM 5427]
          Length = 151

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A+H+      +  IA+   +S  ++ ++   L KAGIV++++G
Sbjct: 1   MKISTKARYGLRALVDLAVHSSGDQVPLISIAQRQELSANYMEQVFSSLKKAGIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALN 116
            +GG  L + +  IT+ +V++A E    + E   +      +  S   C    V  K   
Sbjct: 61  SQGGYILAKRSCDITVGEVIRAIEGEILIVEEEEARDDASLIYNSMKQCLQEQVWSKITE 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           +   V+   ++E L+++   + +
Sbjct: 121 SICQVIDHITLEDLMKDYEKLNQ 143


>gi|254252225|ref|ZP_04945543.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
 gi|124894834|gb|EAY68714.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
          Length = 173

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV++Y A+  D    I +I++A  IS+  L K++Q L + G V+T+RGR
Sbjct: 3   MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTIRGR 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
            GG+RL   + Q+T+  VV+ATE  F +  CF++      C +   C L  V   A +AF
Sbjct: 63  NGGLRLFPESLQLTVGQVVRATENDFALVGCFSAEAESRRCVIELQCRLKGVFAAARDAF 122

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
           F  L ++++  L    SS+  +  
Sbjct: 123 FAELDRHTVGELAAPASSLVSLLG 146


>gi|296104217|ref|YP_003614363.1| putative FeS cluster assembly transcriptional regulator IscR
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058676|gb|ADF63414.1| putative FeS cluster assembly transcriptional regulator IscR
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 163

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|229094650|ref|ZP_04225696.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228688732|gb|EEL42582.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
          Length = 168

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|52144351|ref|YP_082476.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51977820|gb|AAU19370.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 168

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|16761458|ref|NP_457075.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16765864|ref|NP_461479.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29140845|ref|NP_804187.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56412578|ref|YP_149653.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181108|ref|YP_217525.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161612691|ref|YP_001586656.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549428|ref|ZP_02343187.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992670|ref|ZP_02573766.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232118|ref|ZP_02657176.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168238283|ref|ZP_02663341.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168243329|ref|ZP_02668261.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261413|ref|ZP_02683386.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466699|ref|ZP_02700553.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168821475|ref|ZP_02833475.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444495|ref|YP_002041806.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448157|ref|YP_002046605.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472929|ref|ZP_03078913.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737710|ref|YP_002115607.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197261796|ref|ZP_03161870.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361513|ref|YP_002141149.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243196|ref|YP_002216610.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387218|ref|ZP_03213830.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204929440|ref|ZP_03220514.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205353643|ref|YP_002227444.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857952|ref|YP_002244603.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213161574|ref|ZP_03347284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416856|ref|ZP_03350000.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213425310|ref|ZP_03358060.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580754|ref|ZP_03362580.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213622388|ref|ZP_03375171.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646424|ref|ZP_03376477.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855574|ref|ZP_03383814.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224582916|ref|YP_002636714.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912665|ref|ZP_04656502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289825402|ref|ZP_06544639.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|75481667|sp|Q57LG8|ISCR_SALCH RecName: Full=HTH-type transcriptional regulator iscR
 gi|81362034|sp|Q5PNG2|ISCR_SALPA RecName: Full=HTH-type transcriptional regulator iscR
 gi|81416273|sp|Q7CQ10|ISCR_SALTY RecName: Full=HTH-type transcriptional regulator iscR
 gi|81849081|sp|Q8XF25|ISCR_SALTI RecName: Full=HTH-type transcriptional regulator iscR
 gi|189044751|sp|A9N1X3|ISCR_SALPB RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711622|sp|B5FR87|ISCR_SALDC RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711623|sp|B5R5A3|ISCR_SALEP RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711624|sp|B5RD13|ISCR_SALG2 RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711625|sp|B4TDB7|ISCR_SALHS RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711626|sp|B4T1C0|ISCR_SALNS RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711627|sp|B5BAW5|ISCR_SALPK RecName: Full=HTH-type transcriptional regulator iscR
 gi|226711628|sp|B4TRX7|ISCR_SALSV RecName: Full=HTH-type transcriptional regulator iscR
 gi|254806056|sp|C0PYK6|ISCR_SALPC RecName: Full=HTH-type transcriptional regulator iscR
 gi|25303602|pir||AG0824 conserved hypothetical protein STY2790 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421089|gb|AAL21438.1| hypothetical protein STM2544 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503758|emb|CAD02747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136470|gb|AAO68036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126835|gb|AAV76341.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128741|gb|AAX66444.1| believed to be involved in assembly of Fe-S clusters [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362055|gb|ABX65823.1| hypothetical protein SPAB_00388 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403158|gb|ACF63380.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194406461|gb|ACF66680.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194459293|gb|EDX48132.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713212|gb|ACF92433.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195630843|gb|EDX49435.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092989|emb|CAR58421.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197240051|gb|EDY22671.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197288800|gb|EDY28173.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197937712|gb|ACH75045.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604316|gb|EDZ02861.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321159|gb|EDZ06359.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205273424|emb|CAR38399.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325358|gb|EDZ13197.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329099|gb|EDZ15863.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333691|gb|EDZ20455.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337574|gb|EDZ24338.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205341984|gb|EDZ28748.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349628|gb|EDZ36259.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709755|emb|CAR34107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467443|gb|ACN45273.1| hypothetical protein SPC_1107 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247740|emb|CBG25568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994666|gb|ACY89551.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159093|emb|CBW18607.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913533|dbj|BAJ37507.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087042|emb|CBY96811.1| HTH-type transcriptional regulator iscR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222751|gb|EFX47822.1| Iron-sulfur cluster regulator IscR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613314|gb|EFY10256.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620482|gb|EFY17347.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625050|gb|EFY21879.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629506|gb|EFY26282.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633893|gb|EFY30632.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635499|gb|EFY32210.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639825|gb|EFY36504.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644289|gb|EFY40833.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652256|gb|EFY48613.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654836|gb|EFY51153.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658236|gb|EFY54502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322661693|gb|EFY57911.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669673|gb|EFY65819.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673320|gb|EFY69425.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322674891|gb|EFY70978.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682914|gb|EFY78932.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685575|gb|EFY81570.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322715598|gb|EFZ07169.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323130874|gb|ADX18304.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194686|gb|EFZ79876.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200370|gb|EFZ85451.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201270|gb|EFZ86337.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208340|gb|EFZ93280.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211584|gb|EFZ96422.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216016|gb|EGA00748.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221911|gb|EGA06305.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225596|gb|EGA09823.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229313|gb|EGA13437.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235372|gb|EGA19456.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237442|gb|EGA21505.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245197|gb|EGA29198.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248771|gb|EGA32698.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254049|gb|EGA37870.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254914|gb|EGA38706.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262019|gb|EGA45584.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267803|gb|EGA51284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269638|gb|EGA53090.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624365|gb|EGE30710.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628745|gb|EGE35088.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989471|gb|AEF08454.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 164

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R   +   
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEVL 136


>gi|152971394|ref|YP_001336503.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238895988|ref|YP_002920724.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040270|ref|ZP_06013521.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330007731|ref|ZP_08306057.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           sp. MS 92-3]
 gi|189044749|sp|A6TCF2|ISCR_KLEP7 RecName: Full=HTH-type transcriptional regulator iscR
 gi|150956243|gb|ABR78273.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548306|dbj|BAH64657.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259042379|gb|EEW43399.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328535344|gb|EGF61827.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
           sp. MS 92-3]
          Length = 163

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I + +V+ A +ES     C             C   ++ R       
Sbjct: 61  PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSERLT 118

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  LV N+  +
Sbjct: 119 GFLNNITLGELVNNQEIL 136


>gi|315649593|ref|ZP_07902678.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
 gi|315275066|gb|EFU38441.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
          Length = 133

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K TDY +  +++  A     P  + Q+AE   +S  +L KIL  LVKAG++E++ G
Sbjct: 1   MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  + I+ LD++ A E S  + +C   H   CP      +  V+  A     
Sbjct: 61  VNGGYRLKRNWEDISFLDIIHAIEGSASLFDCSFDHGPGCP------IQKVVLSAEEKME 114

Query: 120 DVLTQYSIECLVRNRS 135
           ++L    +  LVR  +
Sbjct: 115 ELLRNQKMSDLVREHN 130


>gi|53719117|ref|YP_108103.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|53723605|ref|YP_103037.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76811401|ref|YP_333785.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121599434|ref|YP_993187.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|124383404|ref|YP_001026037.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126442087|ref|YP_001059260.1| Rrf2 family protein [Burkholderia pseudomallei 668]
 gi|126450910|ref|YP_001080694.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|126452205|ref|YP_001066527.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134277214|ref|ZP_01763929.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|167003463|ref|ZP_02269249.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|167738224|ref|ZP_02410998.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167815414|ref|ZP_02447094.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167823823|ref|ZP_02455294.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
 gi|167845364|ref|ZP_02470872.1| putative transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|167893908|ref|ZP_02481310.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167902361|ref|ZP_02489566.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167910597|ref|ZP_02497688.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167918624|ref|ZP_02505715.1| putative transcriptional regulator [Burkholderia pseudomallei
           BCC215]
 gi|217421524|ref|ZP_03453028.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|237812583|ref|YP_002897034.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|238563651|ref|ZP_04610659.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|242317014|ref|ZP_04816030.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254177455|ref|ZP_04884110.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|254179517|ref|ZP_04886116.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|254189092|ref|ZP_04895603.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197503|ref|ZP_04903925.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254199984|ref|ZP_04906350.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|254206317|ref|ZP_04912669.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|254260786|ref|ZP_04951840.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
 gi|254297396|ref|ZP_04964849.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|254358271|ref|ZP_04974544.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|52209531|emb|CAH35484.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52427028|gb|AAU47621.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76580854|gb|ABA50329.1| Transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121228244|gb|ABM50762.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|124291424|gb|ABN00693.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|126221580|gb|ABN85086.1| Rrf2 family protein [Burkholderia pseudomallei 668]
 gi|126225847|gb|ABN89387.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126243780|gb|ABO06873.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|134250864|gb|EBA50943.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|147749580|gb|EDK56654.1| putative transcriptional regulator [Burkholderia mallei FMH]
 gi|147753760|gb|EDK60825.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|148027398|gb|EDK85419.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|157807741|gb|EDO84911.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|157936771|gb|EDO92441.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698494|gb|EDP88464.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|169654244|gb|EDS86937.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|184210057|gb|EDU07100.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|217395266|gb|EEC35284.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|237503358|gb|ACQ95676.1| putative transcriptional regulator [Burkholderia pseudomallei
           MSHR346]
 gi|238520270|gb|EEP83732.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
           4]
 gi|242140253|gb|EES26655.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|243061024|gb|EES43210.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|254219475|gb|EET08859.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
          Length = 165

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ +VV+ TE  F +  CFA        C +  +C L  V   A  A
Sbjct: 61  NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145


>gi|268317559|ref|YP_003291278.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
           DSM 4252]
 gi|262335093|gb|ACY48890.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
           DSM 4252]
          Length = 142

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++  +YG+R ++Y A +++D    I +I E   IS  FL KI Q L +AG+++++RG  
Sbjct: 2   FSRACEYGLRAVLYLASLNHDGYVSIREIGERLNISVPFLTKIFQKLTQAGLMQSLRGPS 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGV   R  ++IT+ DV+ A +      EC       C     C L    ++  N   ++
Sbjct: 62  GGVMFARSPEEITLFDVIVAIDGPDLFTECVLGL-PGCGEATPCPLHDHWKEVRNPIRNL 120

Query: 122 LTQYSIECLVRNRSSIKKIFNA 143
               ++  + R     +    A
Sbjct: 121 FASTTLADMARRMQEARLRLTA 142


>gi|93006479|ref|YP_580916.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394157|gb|ABE75432.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
           cryohalolentis K5]
          Length = 170

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  A+     +    +S IA+   IS  +L ++   L K G+V ++
Sbjct: 1   MRLTTRGRYAVTALLDLALQTSQQESAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L +P DQI ++ ++ A +ES    +C    + DC     C    +     N 
Sbjct: 61  RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118

Query: 118 FFDVLTQYSIECLVR 132
               L   ++  L+ 
Sbjct: 119 VEQYLKNITLAQLLN 133


>gi|260893739|ref|YP_003239836.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
 gi|260865880|gb|ACX52986.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
           KC4]
          Length = 137

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +R T+Y IR L++ A          +IAEA  I   FL KILQ L +AG+V + RG
Sbjct: 1   MELIRRNTEYAIRALVHLAACKGEVVSAKEIAEAQDIPIEFLQKILQRLGRAGLVVSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I +L+V+   +    V +CF   +  C    +C L            
Sbjct: 61  AAGGFSLARKPSEINLLEVITVMQGRPAVNKCFLGREA-CERAPTCRLKYNWLVLEQKIG 119

Query: 120 DVLTQYSIECLVRN 133
           + L   +++ LV  
Sbjct: 120 EFLADVTLQDLVDQ 133


>gi|167719226|ref|ZP_02402462.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
          Length = 162

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +RV+++ A+  +  + I +I++A  IS+  L K++Q L + G +ETVRGR
Sbjct: 1   MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
            GG+RL   +  +T+ +VV+ TE  F +  CFA        C +  +C L  V   A  A
Sbjct: 61  NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
           FF  L +++I  L +  S +  +  
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145


>gi|148555866|ref|YP_001263448.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501056|gb|ABQ69310.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 179

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H+T   +YGI  L++     D       +AE   IS  FL KI   L KAGIV    G R
Sbjct: 3   HITTSVEYGIHCLLWLVGSGDRAMSSRDLAELQGISPSFLAKIFPKLEKAGIVVASEGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPAD I+ LD+V A E    + +C         FA         G C +  V+ 
Sbjct: 63  GGYRLARPADAISFLDIVDAIEGEKPLFDCQEVRERCALFAGGMPAWATDGVCAVHGVML 122

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  A  D L   S++ + 
Sbjct: 123 QAEKAMRDALAAQSLQDVA 141


>gi|157371753|ref|YP_001479742.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323517|gb|ABV42614.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 180

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +YGI  L++    N       ++AE   IS  FL KI   L KAGIV    G RG
Sbjct: 4   ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G RL RPAD+IT L+++ A E    + +C         F  +  D  L G C + +V+ +
Sbjct: 64  GYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQ 123

Query: 114 ALNAFFDVLTQYSI 127
           A  A  D L   ++
Sbjct: 124 AEKAMRDALAVQTL 137


>gi|73542904|ref|YP_297424.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72120317|gb|AAZ62580.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 150

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A  +   P  I+++ +   +S   L K+   L K G +   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARADGSRPITIAEVGQQFEVSHHHLVKVAARLSKLGWITATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   ADQ+TI  +++  E    V +C       C L G+C L   L +A  AF+
Sbjct: 61  RHGGLELGPQADQLTIGTILRELEGHKPVIDC---DDPPCALKGNCRLRRALDEAEQAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +  ++++
Sbjct: 118 RSLDTVTLADVTGSQTA 134


>gi|332295070|ref|YP_004436993.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
           narugense DSM 14796]
 gi|332178173|gb|AEE13862.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
           narugense DSM 14796]
          Length = 141

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +T YG+R L   A +   Y     Q+A+   IS  +L ++L  L   GIVE+ +G 
Sbjct: 3   KLSTKTRYGLRALCQLAQVKKGYTIPAHQLAKDQEISLSYLEQVLNVLKHHGIVESFKGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L     +I + DV++  E    + +C A     C     C   ++ +K  N    
Sbjct: 63  GGGYKLNVDPKKIILKDVIEILEGPVLITDCSADPS-KCHRAEDCLTRALWQKIGNQVNS 121

Query: 121 VLTQYSIECLVRNR 134
            L + ++  LV+  
Sbjct: 122 FLGKITLNDLVKKN 135


>gi|170741067|ref|YP_001769722.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168195341|gb|ACA17288.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
           4-46]
          Length = 157

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L + G++ T RGR
Sbjct: 1   MHLTRYTDYALRTLIYLGLREPQQSSIAEIARAYGISENHLTKVVHQLGRLGLIRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I +  VV+ TEE   + ECFAS    C +  SC L   L +AL AF  
Sbjct: 61  GGGLRLGKPPSEIVVGAVVRQTEEDLALVECFASSA--CAITASCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142
           VL  Y++  L+ + S   I ++  
Sbjct: 119 VLDGYTLADLLEDGSGPEIARLLG 142


>gi|325102989|ref|YP_004272643.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324971837|gb|ADY50821.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 144

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGIR L+    H D  P  IS IAE   I + FL +IL  L  AG + + +G  
Sbjct: 2   LSKKTKYGIRALIALGEHYDKEPVNISFIAETEKIPKKFLEQILLELRNAGFLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I ++ V++ T        C    F     +C    +CG+    R   +A
Sbjct: 62  GGYSLLKNPKDINLVQVMRITGGPIAQLPCVSLNFYQRCEECKDEENCGIRDTFRDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              +L++ +I  L+     + +
Sbjct: 122 TLKILSETTIADLIAKEKGLPR 143


>gi|313634571|gb|EFS01056.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067]
          Length = 138

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  VE++ G
Sbjct: 1   MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +PA  I+ LDV++A E       C    K        C +  V+  A+    
Sbjct: 61  VNGGYKLAKPATNISFLDVIQAIEGKTAFFHC--DPKNHAETKSHCLIGEVMGNAVQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ +I  +V
Sbjct: 119 DYLSKQTIGSIV 130


>gi|291548060|emb|CBL21168.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           SR1/5]
          Length = 142

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG++ L+   ++++     +  IA    IS  +L +++  L KAG+V++VRG
Sbjct: 1   MKLSTRAKYGLKALIDLGLYSEKEAVSLQSIAGRQNISVSYLEQLMALLKKAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L RPA++I++ D+++  E     A C        C     C    V ++  ++ 
Sbjct: 61  AAGGYFLGRPAEEISVGDILRVLEGGLEAATCPGTEGDGGCQGSDLCVAKLVWKRINDSI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D +    +  L+     I +
Sbjct: 121 TDAVDTLMLSELIEESRRIHE 141


>gi|3659616|gb|AAC61685.1| CDG1D [Gluconacetobacter xylinus]
          Length = 138

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR L+Y   +      I +IA    IS+  L K++  L   G++   RGR
Sbjct: 1   MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAATHRISQNHLVKVVNRLSSNGVILARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L     QI I D+++  E     +  C   +   C L  +C L  +  K++NAF 
Sbjct: 61  SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLQGLFAKSVNAFM 120

Query: 120 DVLTQYSIECLVRNRSSI 137
            VL + ++  ++     +
Sbjct: 121 SVLDRITLHDILHEPKKL 138


>gi|91795047|ref|YP_564698.1| hypothetical protein Sden_3702 [Shewanella denitrificans OS217]
 gi|91717049|gb|ABE56975.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
           denitrificans OS217]
          Length = 151

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDYGIR+LMY AI  +     RI +I +   +S   + KI+  L K G ++T+R
Sbjct: 1   MQLTRYTDYGIRILMYLAIQPERTELFRIGEITDVFDLSANHVAKIVNHLGKLGYLKTIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG +L   A  I +  +V+  E S     C   +   C     C L S+L KAL+A+
Sbjct: 61  GKHGGFKLVTSASDINLGTLVRQLENSLVQVNCAEPY---CRFTPVCNLKSMLAKALSAY 117

Query: 119 FDVLTQYSIECLVRNRSSI 137
             VL  Y +  ++ N   +
Sbjct: 118 LAVLDSYYLSDVIDNSDKL 136


>gi|46907743|ref|YP_014132.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47094363|ref|ZP_00232058.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217964338|ref|YP_002350016.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|226224116|ref|YP_002758223.1| hypothetical protein Lm4b_01525 [Listeria monocytogenes Clip81459]
 gi|254852139|ref|ZP_05241487.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|254931450|ref|ZP_05264809.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|290893874|ref|ZP_06556852.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|300764819|ref|ZP_07074809.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
 gi|46881012|gb|AAT04309.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017261|gb|EAL08099.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217333608|gb|ACK39402.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|225876578|emb|CAS05287.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605442|gb|EEW18050.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|290556591|gb|EFD90127.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293583001|gb|EFF95033.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|300514495|gb|EFK41552.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
 gi|307571096|emb|CAR84275.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
 gi|313608684|gb|EFR84520.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
 gi|328465553|gb|EGF36782.1| hypothetical protein LM1816_06485 [Listeria monocytogenes 1816]
 gi|328474876|gb|EGF45676.1| hypothetical protein LM220_11812 [Listeria monocytogenes 220]
 gi|332311957|gb|EGJ25052.1| HTH-type transcriptional regulator CymR [Listeria monocytogenes
           str. Scott A]
          Length = 140

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|209548376|ref|YP_002280293.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534132|gb|ACI54067.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 148

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRHG 140


>gi|218885726|ref|YP_002435047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756680|gb|ACL07579.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 180

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + +++   ++  F+ +IL+ L + G+  + RG
Sbjct: 1   MKLAAKTRYAARILLALAMHGEESPMTTTALSQHTGVTVQFIEQILKTLKRGGLTRSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  ++IT+ ++V+  E    +  C +     C    SC   S   +A  A  
Sbjct: 61  ASGGHMLARTPEEITLSEIVRLMEGGIQLTVCCSGDANACARRASCLTRSAWVRASQALE 120

Query: 120 DVLTQYSIECLVRNRSSI 137
             L + ++  L+     +
Sbjct: 121 HSLEETTLATLMEGDQPL 138


>gi|297568160|ref|YP_003689504.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924075|gb|ADH84885.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 130

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IR +   A H      I  IA    I   FL KILQ L +A IVE+ RG 
Sbjct: 1   MQITRATDYAIRCVYCLARHPGELWMIDDIAREMEIPNSFLAKILQKLARAQIVESQRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL R  ++I++ DVV ATE    +  C    +  C  V  C +  V         +
Sbjct: 61  RGGFRLARAPEEISLHDVVVATEGPVAMNVCTLEGE-RCDRVEKCRVHPVWVTIRQEVEE 119

Query: 121 VLTQYSIECLV 131
            L +      +
Sbjct: 120 ALQKRKFADFL 130


>gi|169831709|ref|YP_001717691.1| BadM/Rrf2 family transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638553|gb|ACA60059.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 151

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG R L+  A H  + P  +  IA    +S+ +L +++  L  AG+V ++RG
Sbjct: 1   MRVSTRVRYGTRALVDIAEHHGNGPVCLRDIARRQKVSQPYLEQLILLLKAAGLVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L R   +I++++V+        V +C       C   G+CG+     +  +A  
Sbjct: 61  ARGGFVLARDPAEISMIEVMTTLGWESEVVDCVGDPG-SCSRAGACGMRDFWCRLSDAVS 119

Query: 120 DVLTQYSIECLVRNRSS 136
            V+   ++  L++ ++ 
Sbjct: 120 KVVGSTTLADLMQEQAE 136


>gi|254824426|ref|ZP_05229427.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|293593662|gb|EFG01423.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
          Length = 140

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|78485133|ref|YP_391058.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78363419|gb|ABB41384.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
           crunogena XCL-2]
          Length = 145

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK+TD+  RVL+Y A       + I  I++   IS+  L K++Q LV  G+V +VRG
Sbjct: 1   MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLVSHGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +   +IT+ +V++  E +     C    +  C +   C L   L +A N + 
Sbjct: 61  QHGGIYLEKELHEITLREVIELMEATLTPVNC---DEPGCKIKEVCQLKIYLVEAQNQYL 117

Query: 120 DVLTQYSIECLVRN 133
             L Q+++  +V +
Sbjct: 118 TYLEQFTLADIVND 131


>gi|253574913|ref|ZP_04852253.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845959|gb|EES73967.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 145

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  YG+ ++M  A  + + P  +  IAE   +SE +L +++ PL  AG+V++VRG 
Sbjct: 8   KISTKGRYGLTIMMELAAKYGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRGA 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L + A +IT  D+++  E      +                   +  +  ++  +
Sbjct: 68  YGGYILSKEASEITAGDIIRVLEGPISPVDFTEEDDP--------AKRDLWLRIRDSIAE 119

Query: 121 VLTQYSIECLVR 132
           VL   ++E LV 
Sbjct: 120 VLDSTTLENLVN 131


>gi|73749368|ref|YP_308607.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
 gi|147669978|ref|YP_001214796.1| BadM/Rrf2 family transcriptional regulator [Dehalococcoides sp.
           BAV1]
 gi|289433326|ref|YP_003463199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Dehalococcoides sp. GT]
 gi|73661084|emb|CAI83691.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
 gi|146270926|gb|ABQ17918.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
           BAV1]
 gi|288947046|gb|ADC74743.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
           GT]
          Length = 148

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  + +  +   A+H  + P  I  +A+   ISE +L ++  PL  AG+V +VRG
Sbjct: 1   MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I + D+VKATE S   +EC    ++ C     C   +V  +   A  
Sbjct: 61  ANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLRIKKATD 119

Query: 120 DVLTQYSIECLVRN 133
           ++L   +++ LV+ 
Sbjct: 120 EILDSINLDNLVQQ 133


>gi|229918428|ref|YP_002887074.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
           AT1b]
 gi|229469857|gb|ACQ71629.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
           AT1b]
          Length = 135

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A   D  P  + +IA    + E +L +++ PL   G+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIALARETDNKPLSLKKIAARHELPEHYLEQLIGPLRNGGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +P +++T  ++++  E    + E   +               +  K   A  
Sbjct: 61  AYGGYQLVKPPEEVTAGEIIRLLEGPLAIVEDSEADDA--------VKRKLWDKIKEAID 112

Query: 120 DVLTQYSIECLVRNRSS 136
            VL + ++  L    S 
Sbjct: 113 TVLDETTLADLAEEESD 129


>gi|120602252|ref|YP_966652.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|120562481|gb|ABM28225.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
          Length = 188

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + ++E   ++  F+ +IL+ L + G+  + RG
Sbjct: 19  MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 78

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  D I++ D+V+  E    +  C       C     C   S   KA  A  
Sbjct: 79  AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 138

Query: 120 DVLTQYSIECLVRNR 134
             L + S+  L+   
Sbjct: 139 AALDETSLTALMSGE 153


>gi|220922121|ref|YP_002497422.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219946727|gb|ACL57119.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 153

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y        + I+++A A  ISE  L K++  L + G+V T RGR
Sbjct: 1   MRLTCFTDYALRTLIYLGTAEPRQSSIAEVARAYGISENHLVKVVHQLGRLGLVRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL + A +I I +VV+ATEE   + +CFA     C +  +C L +VL +AL AFF 
Sbjct: 61  GGGLRLGKAAAEIRIGEVVRATEEDLALVQCFAGG--SCAITPACRLRNVLGEALAAFFA 118

Query: 121 VLTQYSIECLVRNRSS 136
           VL +Y++  L+   + 
Sbjct: 119 VLDRYTLADLLEPHAG 134


>gi|116872944|ref|YP_849725.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741822|emb|CAK20946.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 140

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYILNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLADLLKH 126


>gi|304440321|ref|ZP_07400210.1| iron-sulfur cluster assembly transcription regulator IscR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371073|gb|EFM24690.1| iron-sulfur cluster assembly transcription regulator IscR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 131

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +      + D P  IS IA    +SE +L ++   L  A ++++ RG
Sbjct: 1   MKLSTKGRYGLMAMYRLMESYGDGPQSISNIAMKENLSESYLEQLFSLLRNAKLIKSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +I I ++++A E +  ++ C     + CP    C    +L        
Sbjct: 61  VNGGYSLAKDPKEIKIGEIIEALEGNMELSCC--QKDVVCPKSEECPTRDILDVVQFKIE 118

Query: 120 DVLTQYSIECL 130
           +VL   ++E +
Sbjct: 119 NVLDSMTLEDM 129


>gi|308070540|ref|YP_003872145.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859819|gb|ADM71607.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 132

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y +  ++   A  +  P  + Q+AE+  +S  +L KIL  LVKAG++E+V G
Sbjct: 1   MKFTKATNYALHTMLMLVADSSVKPVGVQQLAESQNVSPTYLSKILTRLVKAGMIESVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  D IT LD++ A E +  + EC   H         C + +V+R+A     
Sbjct: 61  ANGGYRLSRHKDDITFLDIIHAIEGTNSLFECDFVH------GSECLIQAVMREAEEKME 114

Query: 120 DVLTQYSIECLVRNRSSI 137
             L    +  L + ++ +
Sbjct: 115 RHLKNTKLVDLAQKQTQV 132


>gi|218661187|ref|ZP_03517117.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
 gi|218675215|ref|ZP_03524884.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 148

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRHG 140


>gi|218463759|ref|ZP_03503850.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli
           Kim 5]
          Length = 148

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRQG 140


>gi|218508224|ref|ZP_03506102.1| putative transcriptional regulator protein [Rhizobium etli Brasil
           5]
 gi|327194314|gb|EGE61175.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 148

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRHG 140


>gi|33415325|gb|AAQ18178.1| putative 15.3 kDa negative regulatory protein [Rhodobacter
           capsulatus]
          Length = 140

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL   TD+ +R L++ A   +       ++    IS   L K++Q LV  G   T++G 
Sbjct: 1   MHLLASTDFALRALLFLATDPERLVNTETMSRDLGISRNHLQKVVQALVAGGFARTIKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGVRL  PA +I I  VV+  EE   +  CFA     C +   CGL  VL  A + ++D
Sbjct: 61  RGGVRLAHPATEIRIGAVVRHFEEHQPIVACFAPEG-QCVIEPICGLKGVLAGAQSQYYD 119

Query: 121 VLTQYSIECLVRNRS 135
            L  Y++   +R   
Sbjct: 120 FLNGYTLADCLRRPR 134


>gi|170743400|ref|YP_001772055.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168197674|gb|ACA19621.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
           4-46]
          Length = 150

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ L++ A +       ++++A A  I + FL  IL  L  AG+V + +G  
Sbjct: 2   LTNKGKYGLKALVHLAALPPGTRIGVAEVAAANNIPKKFLDAILGELRNAGLVHSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP ++I +   V+  +       C +        DCP  G+C +  V+ +  N+
Sbjct: 62  GGYALARPPEEIRVGHAVRVLDGPLAPVPCASRTAYRPCEDCPDEGACAVRLVMLEVRNS 121

Query: 118 FFDVLTQYSIECL 130
              VL   ++  +
Sbjct: 122 IAGVLDTLTLAQM 134


>gi|78223114|ref|YP_384861.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194369|gb|ABB32136.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 153

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ L+Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKALLYLAREYDRGPILIADLAREERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  P  +IT+  V++  E       C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAHPPREITMGKVIRTLEGPLAPVPCVSETAYARCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              +L   ++  ++      K+
Sbjct: 122 MAQILDNATLAAVLERIEQEKQ 143


>gi|291280535|ref|YP_003497370.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
           SSM1]
 gi|290755237|dbj|BAI81614.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
           SSM1]
          Length = 142

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T R+ Y IR L   A+      P  + +++E   IS  +L ++   L+KAGIV +VR
Sbjct: 1   MKVTTRSRYAIRALYALALAGGDKTPVSLKKVSEMESISMKYLERLFSNLMKAGIVNSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG    +P ++IT+LDVV+  +      +C       C     C +  +     N  
Sbjct: 61  GIYGGYIFSKPLNEITLLDVVEVMDGVIKPVDCVEEEG--CDRSRDCSINWIWFDLKNII 118

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            + L++ +   LV    +  K+
Sbjct: 119 ENYLSKITFYDLVYGLKNKYKV 140


>gi|23097775|ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22775999|dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 141

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A I       + ++AE   +S  +L KIL  LVK+G++E+  G
Sbjct: 1   MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R AD IT LDV++A E    +  C   H  D      C + + + +A     
Sbjct: 61  AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK 120

Query: 120 DVLTQ---YSIECLVRNRSSI 137
           + L +     I  L+R++ ++
Sbjct: 121 ESLDRKYIVDIAKLMRSQKNL 141


>gi|116251030|ref|YP_766868.1| Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255678|emb|CAK06759.1| putative Rrf2 family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 148

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   G+V + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   +  + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140


>gi|16800618|ref|NP_470886.1| hypothetical protein lin1550 [Listeria innocua Clip11262]
 gi|16414037|emb|CAC96781.1| lin1550 [Listeria innocua Clip11262]
          Length = 140

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRN 133
           DVL Q ++  L+++
Sbjct: 113 DVLDQTTLSDLLKH 126


>gi|297617120|ref|YP_003702279.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144957|gb|ADI01714.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 133

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++T+Y +RV++  A +         +I+E   I E+FL K +Q L +AG+V T RG
Sbjct: 1   MQITRQTEYAVRVMLELARLPKGEMLSAREISEKQQIPEVFLKKTIQILARAGLVHTQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGGV+L +   ++T+ D++ A E    +  C      +C     C +  VL +A  A  
Sbjct: 61  PRGGVQLAKDPTEVTLADILVAVEGPLALNVCLVPG-YECVNKPDCKVHRVLARAQKALV 119

Query: 120 DVLTQYSIECLVR 132
             L+  S+  L  
Sbjct: 120 SELSCNSLAELAE 132


>gi|39996447|ref|NP_952398.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
 gi|39983327|gb|AAR34721.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
          Length = 153

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ ++Y A   D  P  I+ +A    I + FL  IL  L  AG++++ +G+ 
Sbjct: 2   ISKKTKYALKAMLYLARERDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I++  +++  E      +C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLAQSPREISMGRIIRILEGPLAPVQCVSETSYSRCEECDDEWSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++  ++  
Sbjct: 122 MATILDGATLADVLER 137


>gi|315303269|ref|ZP_07873911.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
 gi|313628359|gb|EFR96850.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
          Length = 140

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  YG+ + +  A    + P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1   MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++IT  D+++  E    + E     +             +  +  NA  
Sbjct: 61  AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESIEDEEA--------AQRELWTRMRNAVR 112

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL Q ++  L+++ S 
Sbjct: 113 DVLDQTTLADLLKHTSD 129


>gi|296447558|ref|ZP_06889480.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254946|gb|EFH02051.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 153

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ ++Y A         ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKAKYGLKAMVYLAGFEPGRTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP + I +  V++  +      +C +        DC     C +  V+ +A +A
Sbjct: 62  GGYTLARPPEDIRVGAVIRVLDGPLAPIQCASRTVYRRCDDCENEALCTVRLVMVEARDA 121

Query: 118 FFDVLTQYSIECL 130
             +VL   ++  +
Sbjct: 122 IANVLDNRTLAQM 134


>gi|258541650|ref|YP_003187083.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632728|dbj|BAH98703.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635785|dbj|BAI01754.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638840|dbj|BAI04802.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641894|dbj|BAI07849.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644949|dbj|BAI10897.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648004|dbj|BAI13945.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651057|dbj|BAI16991.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654048|dbj|BAI19975.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-12]
          Length = 169

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A+H +    I +IA    ISE  L KI+  L + G ++T+RGR
Sbjct: 13  MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFIDTLRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115
            GG+ L R    I I DVV+ TE+   +  C +         +C L  +C L   L +AL
Sbjct: 73  GGGLMLGRAPQDIRIGDVVRHTEDDMALVSCMSPSPGVPGSTECLLSRACHLRGALGEAL 132

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +AF  VL   ++  ++      ++I  
Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQILQ 157


>gi|329848850|ref|ZP_08263878.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843913|gb|EGF93482.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
          Length = 145

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  Y ++ L++ A          QIAEA  I + FL  ILQ L + GI+++ RG  G
Sbjct: 2   LSMKAKYALKALIHMAQSTSPTLPSKQIAEAEDIPQKFLDNILQELRQNGIIDSKRGIFG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L RPA  I + DV++  +       C +        DC    +C L  ++R   +A 
Sbjct: 62  GYFLARPATDIYLGDVIRVIDGPLAPIRCASLTAYQKCDDCRDETTCHLRRLMRDVRDAM 121

Query: 119 FDVLTQYSIECLVRNRSSIK 138
             +L    ++ LV   S I+
Sbjct: 122 SAILDGRCLQDLVTAPSLIE 141


>gi|187478523|ref|YP_786547.1| hypothetical protein BAV2031 [Bordetella avium 197N]
 gi|115423109|emb|CAJ49640.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 145

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD+G+RVLMY     D      I +IAE   IS   L K++  + + G V   R
Sbjct: 1   MQLTRFTDFGLRVLMYLTQCRDREKAVTIPEIAERFAISRNHLVKVVHFMSQQGWVAATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG+ L RPA    + D+++  E    + +C    +  C L G C L  VL  +L  F
Sbjct: 61  GKGGGLALARPAASYRLGDLLRVLEHQGSLVDCA---EPPCALQGVCRLAGVLNDSLRGF 117

Query: 119 FDVLTQYSIECLV 131
           +D L Q+S+  LV
Sbjct: 118 YDSLNQHSLAELV 130


>gi|172058089|ref|YP_001814549.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990610|gb|ACB61532.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 136

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A   +  P  + +IA+   +SE +L +++ PL   G+V++VRG
Sbjct: 2   MKISTKGRYGLTIMIALAKGGEAKPLSLKKIAQMYDLSEHYLEQLIAPLRNGGLVKSVRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A++IT  D+++  E    V E       +C  V       +  K  +A  
Sbjct: 62  AYGGYKLGRSAEEITAGDIIRLLEGPLVVVE-----GDNCDEVTK---RKLWDKIQSAVD 113

Query: 120 DVLTQYSIECLVRN 133
            VL   +++ L   
Sbjct: 114 QVLDTTTLKDLAEE 127


>gi|319942818|ref|ZP_08017119.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803585|gb|EFW00546.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
          Length = 161

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT +  + +  ++  A+    +D P  I+Q+AE   IS  +L +I   L +AG+VE+ 
Sbjct: 1   MKLTTKGRFAVTAMVDIAMRARESDAPVPIAQVAERQKISLAYLEQIFCRLRRAGLVEST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L  PA QITI  +V A +E+    +C    +  C    +C    +  +  + 
Sbjct: 61  RGPAGGYKLSEPASQITIDRIVLAVDENMDTTQC--RGEGTCLGGAACLTHHLWEELNSV 118

Query: 118 FFDVLTQYSIECLV 131
               L   S+ECL+
Sbjct: 119 IESFLASRSLECLI 132


>gi|237737739|ref|ZP_04568220.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419619|gb|EEO34666.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
          Length = 140

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  YG++ L+Y A  +      RI +I++   IS  +L +IL  L    I+E  R
Sbjct: 1   MKISTRVRYGLKALVYIADKSSENKLVRIKEISDEQGISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL +   +IT+  + K  +E   V +C     HK  C   G+C    +  K  N
Sbjct: 61  GPNGGYRLAKEPKEITLHQLYKILDEEEKVIDCNESEEHKAVCSD-GTCSGKCIWGKLDN 119

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L + +++  ++N+  I
Sbjct: 120 AMTKILEETTLDEFIKNKDMI 140


>gi|86356775|ref|YP_468667.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280877|gb|ABC89940.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 148

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   V  R  
Sbjct: 122 TRKVLFSTTIADAVGPRHG 140


>gi|270264632|ref|ZP_06192897.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041315|gb|EFA14414.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 179

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +YGI  L++    N       ++AE   +S  FL KI   L KAGIV    G RG
Sbjct: 4   ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGVSPSFLAKIFPKLEKAGIVAASEGVRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
           G RL RPAD+I+ L+++ A E    + +C         F +   D  + G C + +V+ +
Sbjct: 64  GYRLARPADEISFLEIIDAIEGHKPLFDCQEVRGRCAVFDNSPPDWAVSGKCAIHAVMLQ 123

Query: 114 ALNAFFDVLTQYSI 127
           A  A  D L   ++
Sbjct: 124 AEKAMRDALAAQTL 137


>gi|240140269|ref|YP_002964747.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254562849|ref|YP_003069944.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|240010244|gb|ACS41470.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           AM1]
 gi|254270127|emb|CAX26117.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
           DM4]
          Length = 158

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TDY +R L+Y  +H    + I++IA A  ISE  L K++  L + G++ T RGR
Sbjct: 1   MRLTRYTDYALRALIYLGLHEPQQSSIAEIARAYGISESHLTKVVHQLGRLGLIRTTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R AD+I I  VV+ TE+   + ECFA     C +   C L   L +AL AF  
Sbjct: 61  GGGLHLGRRADEIVIGAVVRQTEDDLALVECFAGGA--CAITAPCRLRRALGEALAAFLA 118

Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142
           VL  Y++  L+ + +   I  I  
Sbjct: 119 VLDGYTLADLLGDEAGPEIAAILG 142


>gi|296447739|ref|ZP_06889655.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254771|gb|EFH01882.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 147

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ + + A     +   +S+IA    I + FL  IL  L   G V +  G+ 
Sbjct: 2   LTKKGKYGLKAMAHLARFAPGHCVPVSEIATTQHIPKKFLDAILCELRNCGYVASKMGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPAD+I I D+++A +       C +        DC  V  C +  V+++A  A
Sbjct: 62  GGYTLARPADEIMIGDIIRALDGPLAPLPCASRSSYRPCDDCSDVARCAVRMVMQEAQQA 121

Query: 118 FFDVLTQYSIEC 129
              VL   ++  
Sbjct: 122 LSKVLDNCTLAQ 133


>gi|241203623|ref|YP_002974719.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857513|gb|ACS55180.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 148

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   G+V + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPLAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I   +  + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140


>gi|111021140|ref|YP_704112.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820670|gb|ABG95954.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 165

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T + DY +R L+  A     P++   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1   MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GG  L RPA+ ITI DV++  E             +D C    +  L  V         
Sbjct: 61  DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC--GPAAKLQDVWIAVRVNLR 118

Query: 120 DVLTQYSIECLVRNR 134
            VL   S+  +   +
Sbjct: 119 AVLENVSLADVANGQ 133


>gi|78043306|ref|YP_359262.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995421|gb|ABB14320.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 142

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK+ +Y +  LM  A +       +  +AE   + E FL KI+Q LVKAG+V TV+G
Sbjct: 1   MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLVKAGLVYTVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GGV L +  ++IT+L+VV+A E    +++C  +H   C  V  C L  +  K      
Sbjct: 61  PQGGVALLKDPEKITVLEVVEAVEGPIVLSQCI-NHPDICEKVEICPLHKIWHKVQQKLI 119

Query: 120 DVLTQYSIECLVRN 133
           +  + +++  L + 
Sbjct: 120 EEFSSHNLLTLSKE 133


>gi|83310947|ref|YP_421211.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945788|dbj|BAE50652.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 149

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ +++ A H    P  I+ +AEA  I + FL  IL  +   G++ + +G+ 
Sbjct: 2   LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA++I + D+V+  +       C +        DC    +C + +V++   +A
Sbjct: 62  GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCLDEAACTVRAVMQDVRDA 121

Query: 118 FFDVLTQYSIECL 130
              +L   S+  +
Sbjct: 122 IAAILDNTSLADM 134


>gi|284800916|ref|YP_003412781.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
 gi|284994102|ref|YP_003415870.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
 gi|284056478|gb|ADB67419.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
 gi|284059569|gb|ADB70508.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
          Length = 138

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A +  +    + ++A    +S  +L K+L  LVKA  +E+V G
Sbjct: 1   MKFSKATNYALHTIVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  PA  I+ LDV++A E       C    K        C +  V+ KA     
Sbjct: 61  VNGGYKLAEPASSISFLDVIQAIEGKGAFFHC--DPKNHSESQPHCLIGEVMNKAEQQME 118

Query: 120 DVLTQYSIECLV 131
           D L++ ++  +V
Sbjct: 119 DYLSKQTVGSIV 130


>gi|139438731|ref|ZP_01772215.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
           25986]
 gi|133775811|gb|EBA39631.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
           25986]
          Length = 189

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A   +    +   AE   +   F   I   LV+AGIVE++RG 
Sbjct: 29  MDISRKTDYALRMLAMLAEDPECLLSVRTAAEEVNVPYSFARSIQHGLVQAGIVESLRGV 88

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL    D +TI  VV+A +    + +C A    DC  +G+C    +   A     D
Sbjct: 89  HGGMRLKVSPDDVTIRQVVEAVQGPMVMNDCTAPDG-DCARMGACCYHPLWAGAQALMRD 147

Query: 121 VLTQYSIECLVRNRS 135
            L   S+  +V +R 
Sbjct: 148 YLDSVSLGDIVAHRQ 162


>gi|139439175|ref|ZP_01772627.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
           25986]
 gi|133775522|gb|EBA39342.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
           25986]
          Length = 143

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++Y A   D  ++I   ++A+   IS+ +L ++++PL+KAG++ +VR
Sbjct: 1   MLISSKGRYALRLMIYIAALGDAEDKIALREVADREHISQKYLEQLVRPLMKAGLLRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG  + +   ++   D+++A E S     C       C     C      R   +  
Sbjct: 61  GKGGGYMMAKDPAEVRAGDILRAVEGSTAPVAC-DGIDNSCTRSDLCSTVKFWRGLDDVI 119

Query: 119 FDVLTQYSIECLVR 132
              +   ++  L  
Sbjct: 120 EKYVDGVTLADLAA 133


>gi|226363500|ref|YP_002781282.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226241989|dbj|BAH52337.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 165

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T + DY +R L+  A     P++   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1   MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
            GG  L RPA+ ITI DV++  E             +D C    +  L  V         
Sbjct: 61  DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC--GPAAKLQDVWIAVRVNLR 118

Query: 120 DVLTQYSIECLVRNR 134
            VL   S+  +   +
Sbjct: 119 AVLENVSLADVANGQ 133


>gi|310643521|ref|YP_003948279.1| hth-type transcriptional regulator cymr [Paenibacillus polymyxa
           SC2]
 gi|309248471|gb|ADO58038.1| HTH-type transcriptional regulator cymR [Paenibacillus polymyxa
           SC2]
          Length = 139

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      +T  D+++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILANEPSGVTAGDIIRVLEGPISPVDFTEEDDP--------AKRQLWLRIRDSIA 112

Query: 120 DVLTQYSIECLV 131
           +VL   +++ L+
Sbjct: 113 EVLDSTTLKDLI 124


>gi|190890831|ref|YP_001977373.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190696110|gb|ACE90195.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 148

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLV 131
              VL   +I   V
Sbjct: 122 TRKVLFSTTIADAV 135


>gi|212638580|ref|YP_002315100.1| putative transcriptional regulator YrzC [Anoxybacillus flavithermus
           WK1]
 gi|212560060|gb|ACJ33115.1| Putative transcriptional regulator YrzC [Anoxybacillus flavithermus
           WK1]
          Length = 150

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ +  YG+ +++  A  + + P  +  IA+   +SE +L +++ PL  AG+V++VRG 
Sbjct: 14  KISTKGRYGLTIMIELAKRYGEGPISLKSIAQTNNLSEHYLEQLISPLRNAGLVKSVRGA 73

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     +IT  DV++  E    V E     +             +  +  +A  +
Sbjct: 74  YGGYILADEPSKITAGDVIRVLEGPLQVVEELEDEEP--------AKRELWMRIRDAVKE 125

Query: 121 VLTQYSIECLVRN 133
           VL   ++E L  +
Sbjct: 126 VLDSTTLEDLASH 138


>gi|83592507|ref|YP_426259.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575421|gb|ABC21972.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 148

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ L+Y A H D  P  I++IAE+  IS+ FL  IL  L  AG+V + +GR 
Sbjct: 2   LSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRNAGLVGSKKGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +P DQI I  V++  +       C +        DC  V  C +  ++    +A
Sbjct: 62  GGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPCDDCGSVQECAIRGLMLDVRDA 121

Query: 118 FFDVLTQYSIECL 130
              +L   ++  L
Sbjct: 122 MAAILDSTTLAAL 134


>gi|315499746|ref|YP_004088549.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315417758|gb|ADU14398.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 172

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A++    P  +S+I+E   IS  +L ++   L KAG+V++ RG
Sbjct: 1   MRLSTKGRYAVMAMTDLALNAQGKPISLSEISERQQISLSYLEQLFARLRKAGLVKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------------FASHKIDC-PLV 102
             GG  L R AD + + ++V A +E      C                 A+ +I C P  
Sbjct: 61  PGGGYTLARTADALFVSEIVLAVDEPIKATRCALTSNKLGANKRLSKESAAREIGCMPGG 120

Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
             C   ++      A  D L+  S+  +V  R+  +
Sbjct: 121 QRCLTHNLWEDLGFAIHDYLSTVSLNDVVHKRTRKR 156


>gi|299535694|ref|ZP_07049015.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298728894|gb|EFI69448.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 139

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  +I+   V+   E      E   + +             +  +  +A  
Sbjct: 61  AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +IE L +
Sbjct: 113 NVLDTTTIEDLAQ 125


>gi|229816044|ref|ZP_04446365.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
           13280]
 gi|229808358|gb|EEP44139.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
           13280]
          Length = 169

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A  N     +   AEA  +   F   I   LV+AGIVE++RG 
Sbjct: 10  MDISRKTDYALRMLAMLAEGNKSLLSVRTAAEAVDVPYSFARSIQHGLVQAGIVESLRGV 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL     +ITI  +V+A +    + +C A   + CP +  C    +   A     D
Sbjct: 70  RGGMRLRLKPSEITIRQIVEAVQGPLVMNDCTAEEGM-CPRMECCCYHPIWAGAQELLRD 128

Query: 121 VLTQYSIECLVRNRS 135
            L   +++ +V +R 
Sbjct: 129 YLDSVTLDDVVNHRQ 143


>gi|46578685|ref|YP_009493.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603749|ref|YP_968149.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448097|gb|AAS94752.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563978|gb|ABM29722.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311232556|gb|ADP85410.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 165

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +   + YG R+L+  A+H  + P  +  +A    IS+ +L K+ +PL +AG++ + RG
Sbjct: 1   MRILTNSRYGTRMLLDIALHQRERPVLMKDVAARLSISQKYLEKLSRPLKEAGLLVSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA +IT+ DVV+  E    +  C    +  C     C    + ++  +A F
Sbjct: 61  PTGGHMLGRPAVEITVGDVVRVMEGGDELVGC-GRDEAACSHAPGCLTRMIWKECSHAMF 119

Query: 120 DVLTQYSIECLVR 132
             L   + + L+R
Sbjct: 120 ARLDAITFDELLR 132


>gi|238757525|ref|ZP_04618710.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
           35236]
 gi|238704287|gb|EEP96819.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
           35236]
          Length = 125

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       ISQ+ +   +S   + KI+  L + G+V  VRG+ GG+RL +PA QI I D
Sbjct: 3   SLPEGQMTSISQVTDVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPAAQIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L  VL +A+ +F + L  Y++  +V++ S +
Sbjct: 63  VVRELE-PLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVKDNSPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|85713395|ref|ZP_01044399.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
 gi|85692781|gb|EAQ30775.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
           [Idiomarina baltica OS145]
          Length = 150

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K TDYG+RVL+Y A    D    I+ ++    +S+  L K++  L K G+++T RG
Sbjct: 1   MQLKKYTDYGLRVLIYLAAAEPDERATINDLSSVFSVSKNHLNKVVHHLGKLGLIKTWRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG  L   A    +  V++  E      +C       C +   C L  ++      F+
Sbjct: 61  KGGGFSLAVDARHTRLDTVIRQLEGDEDWIDCL---NPTCKIYSVCDLKGIIHAGKEQFY 117

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L +Y+I  LV     IK
Sbjct: 118 SYLAKYTIASLVERPEEIK 136


>gi|254468307|ref|ZP_05081713.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
           KB13]
 gi|207087117|gb|EDZ64400.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
           KB13]
          Length = 159

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  + P  +  ++E   IS  +L ++   L K  IV ++RG
Sbjct: 1   MKLTTKGRFAVSAILDIALNQKNGPVTLLAVSERQGISLSYLEQLFSKLRKGEIVSSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+ +    IT+  ++ A +E     +C      +C     C    +         
Sbjct: 61  PGGGYRIKKAYTDITVRQIISAVDEKIDATQC--GGTENCHDGNRCMTHDLWISVNRKIL 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   S++ L  N  
Sbjct: 119 SYLDSLSLQDLYDNHQ 134


>gi|83310153|ref|YP_420417.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944994|dbj|BAE49858.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 149

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ +++ A H    P  I+ +AEA  I + FL  IL  +   G++ + +G+ 
Sbjct: 2   LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA++I + D+V+  +       C +        DCP   +C + +V++   +A
Sbjct: 62  GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCPDEAACTVRAVMQDVRDA 121

Query: 118 FFDVLTQYSIECL 130
              +    S+  +
Sbjct: 122 IAAIPDNTSLADM 134


>gi|78043860|ref|YP_361240.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995975|gb|ABB14874.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 143

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT+ TDY  R ++Y A           +IA    I   FL KIL+ L +AGIV++ RG
Sbjct: 5   MNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKILRQLGQAGIVKSYRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
             GG  L +  ++IT+LDVV+A E    +  C    +  C     G C +   L    N 
Sbjct: 65  VGGGFSLAKDPEEITLLDVVEAVEGPVKINRCLIDPQY-CTSQRGGRCAIHQELSLIQND 123

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   S + ++    ++
Sbjct: 124 IIARLGTVSFKKILEREQNL 143


>gi|126653988|ref|ZP_01725823.1| YrzC [Bacillus sp. B14905]
 gi|169829331|ref|YP_001699489.1| putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
 gi|126589505|gb|EAZ83648.1| YrzC [Bacillus sp. B14905]
 gi|168993819|gb|ACA41359.1| Putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
          Length = 139

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A H  + P  + +IA    +SE +L +++ PL  +G+V++VRG
Sbjct: 1   MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P  +I+   V+   E      E   + +             +  +  +A  
Sbjct: 61  AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +IE L +
Sbjct: 113 NVLDTTTIEDLAQ 125


>gi|328957508|ref|YP_004374894.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
           17-4]
 gi|328673832|gb|AEB29878.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
           17-4]
          Length = 137

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+ +     R+  +A+   IS  +L KIL  L KAG++ +  G
Sbjct: 1   MKYSKATNYALHSMVHLAMESTSGAVRVEDLAKRQKISPTYLSKILTKLSKAGLIVSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R  ++ T LD+++A E    +  C  SH         C +   +  A +   
Sbjct: 61  VKGGYRLLRSPEECTFLDIIQAIEGYESLLNCTMSHDGKWNR--HCLIERAVADAEDKLK 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L + +I  +++ R  
Sbjct: 119 DELARKTIADILKQRQE 135


>gi|91215754|ref|ZP_01252724.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
           torquis ATCC 700755]
 gi|91186220|gb|EAS72593.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
           torquis ATCC 700755]
          Length = 171

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y I  L+Y A  + + P  IS+IA+   I   FL  IL  L KAG++ + +G+ 
Sbjct: 28  ISKKTKYAINALVYLAKRNGEGPIVISEIAQKEHIPRKFLESILLNLKKAGVLASKKGKG 87

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I + DV++  E    +  C          +C    +CG+ ++  +  N 
Sbjct: 88  GGYYLLQNPEDINLADVMRLVEGPIALLPCVTYKYYERCEECKDEETCGIRNIFYEVRNK 147

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             ++L + ++  +++  S +
Sbjct: 148 TVELLKKANLAEIIKRESHL 167


>gi|108805159|ref|YP_645096.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766402|gb|ABG05284.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 154

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ RTDY +R +   A   +    P +   I+E   I + F+  IL  L +AGIV   
Sbjct: 1   MQVSARTDYALRAVAELARAGMEGSGPVKGEWISEVQKIPKKFMENILLDLKRAGIVRAQ 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RP  +I++ ++++A E             +         L  V      +
Sbjct: 61  RGASGGYWLARPPGEISLAEIIRAVEGPLANVRGEWPENVAYEGAAE-HLQEVWVAVRAS 119

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   ++E LVR  
Sbjct: 120 LRSVLENVTLEDLVRGE 136


>gi|120610257|ref|YP_969935.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588721|gb|ABM32161.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
           AAC00-1]
          Length = 167

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TDY +RVLMYCA       P  I+++A    IS   L KI+Q L   G+++T R
Sbjct: 1   MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL  PA  I + DVV+ TE  F + ECF      C L G C L   L +A  ++
Sbjct: 61  GRGGGLRLRVPAASIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSY 120

Query: 119 FDVLTQYSIECLVRNRSS 136
             VL   ++  LV   ++
Sbjct: 121 LAVLDGVTLADLVARPAA 138


>gi|163743460|ref|ZP_02150839.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
 gi|161383290|gb|EDQ07680.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
          Length = 149

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L+  A   D    I  ++    +    + KI+  LV+ G V ++RGR
Sbjct: 1   MKLNLKTDYALRLLILLATRPDQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV++ R   +I + D+V A  E   + +C +     C LVG+C L  VL +A  AF +
Sbjct: 61  SGGVQIGREPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115

Query: 121 VLTQYSIECLVRNRSSI 137
           VL  Y +  L+   + +
Sbjct: 116 VLMAYRLSDLIEAPAPV 132


>gi|308070333|ref|YP_003871938.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859612|gb|ADM71400.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 139

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      +T  D+++  E      +                   +  +  ++  
Sbjct: 61  AYGGYILANEPAGVTAGDIIRVLEGPISPVDFTEEDDP--------AKRQLWLRIRDSIA 112

Query: 120 DVLTQYSIECLV 131
           +VL   +++ L+
Sbjct: 113 EVLDSTTLKDLI 124


>gi|46580373|ref|YP_011181.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46449790|gb|AAS96440.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233650|gb|ADP86504.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 170

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +T Y  R+L+  A+H +  P   + ++E   ++  F+ +IL+ L + G+  + RG
Sbjct: 1   MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R  D I++ D+V+  E    +  C       C     C   S   KA  A  
Sbjct: 61  AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 120

Query: 120 DVLTQYSIECLVRNR 134
             L + S+  L+   
Sbjct: 121 AALDETSLTALMSGE 135


>gi|323494810|ref|ZP_08099908.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
 gi|323310950|gb|EGA64116.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
          Length = 158

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGED 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A  I I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  
Sbjct: 61  AYSIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGE 118

Query: 130 LVRNRSSIK 138
           L+++   ++
Sbjct: 119 LMKDNEVLE 127


>gi|298207782|ref|YP_003715961.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850420|gb|EAP88288.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 136

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L + A   +  P +I+ I+EA  IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALTHLARQENQAPVQIATISEAENISQKFLESILLTLKKNGILSSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + A  I++++V++  E    +  C +        DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLLKEAKDISMVNVMRVLEGPIAMVPCVSLNYYEKCDDCPDEHACSVHKLMIEVRDS 121

Query: 118 FFDVLTQYSIECLV 131
             D+    S+  L+
Sbjct: 122 TLDIFNNKSLADLI 135


>gi|162454034|ref|YP_001616401.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
 gi|161164616|emb|CAN95921.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
          Length = 232

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ +  YG+R L   A HND  P +I +I+E   I   FL +I Q L KAG++ + RG 
Sbjct: 83  KLSNKGRYGVRALFDIAFHNDGRPTQIREISERELIPARFLEQIFQDLKKAGLISSKRGP 142

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
           RGG  L RPA +I++ DVV+A E    V       + +  PL      T+V      A  
Sbjct: 143 RGGYHLARPASEISLGDVVRALEGPVAVIAPDDDGRPEGSPLDPP---TAVFHDLALAIE 199

Query: 120 DVLTQYSIECLVRNRSSI 137
                 SI  +      +
Sbjct: 200 RCFDSVSIADVCERGVEL 217


>gi|306838497|ref|ZP_07471336.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
 gi|306406418|gb|EFM62658.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
           2653]
          Length = 199

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 58  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 117

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA++I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 118 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 177

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 178 ANVLDHRTLAD 188


>gi|56421100|ref|YP_148418.1| hypothetical protein GK2565 [Geobacillus kaustophilus HTA426]
 gi|261418418|ref|YP_003252100.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC61]
 gi|297529270|ref|YP_003670545.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. C56-T3]
 gi|319767622|ref|YP_004133123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y412MC52]
 gi|56380942|dbj|BAD76850.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374875|gb|ACX77618.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC61]
 gi|297252522|gb|ADI25968.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           C56-T3]
 gi|317112488|gb|ADU94980.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y412MC52]
          Length = 138

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  + D P  +  IA+A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLAEHPAKITAGDILRVLEGPLTPVEELEEEEP--------AKRELWIRIRDAVE 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L +
Sbjct: 113 EVLDSTTLEDLAK 125


>gi|302560986|ref|ZP_07313328.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
 gi|302478604|gb|EFL41697.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
          Length = 160

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++AEA  +      K++  L   G++   RGR
Sbjct: 13  MRLLRSTDLALRVLMRLAVAGDSSPTTREVAEAMDVPYTHAAKVVAELQHMGLLTARRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L       ++  +V++ E    V +C   +    CPL  +C L   LR+A  AFF
Sbjct: 73  GGGLSLTEDGRAASVGALVRSFEGDGDVVDCEGTATSPACPLSSACRLRGALRRAQEAFF 132

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +V + + 
Sbjct: 133 ATLDPVTVADIVTDPTG 149


>gi|303238934|ref|ZP_07325465.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
 gi|302593567|gb|EFL63284.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
           cellulolyticus CD2]
          Length = 149

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A+H       +  IAE   IS  +L ++   L K+G+V++V+G
Sbjct: 1   MKFSTKGRYGLRAMVDLAVHAKGEHVALCSIAERQGISMNYLEQVFSVLRKSGLVKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
            +GG  L      I +  +++  E    V +  A +  +    + SC    V  K   + 
Sbjct: 61  AQGGYILSESPADIKVGRILRVLEGPLSVIDEDAENSTENESRIQSCIRMCVWDKMNESL 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D+    ++E LV N   +  I
Sbjct: 121 NDLADSLTLEDLVDNYWKMNGI 142


>gi|302340142|ref|YP_003805348.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637327|gb|ADK82754.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 138

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +  Y IR ++  A   +  P  I  +A    IS  FL +I   L K+GI+ + RG
Sbjct: 1   MRITTKGRYAIRAVLRLAQAEEHRPIPIRILAAQEGISPEFLEQIFFRLRKSGIINSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL + A+ +T++++  A EE FF++ C    +  C     C +  +         
Sbjct: 61  PGGGFRLMKEANDLTLMEIFDAVEEGFFLSPCTQDGE-QCDREERCLVHGLWEHTYEMLQ 119

Query: 120 DVLTQYSIECLVRNR 134
                 +I  ++ NR
Sbjct: 120 SYFGAITIADVMANR 134


>gi|269137717|ref|YP_003294417.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
 gi|267983377|gb|ACY83206.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304557773|gb|ADM40437.1| Nitrite-sensitive transcriptional repressor NsrR [Edwardsiella
           tarda FL6-60]
          Length = 124

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+       I+Q+ E   +S   + KI+  L +AG V  VRG+ GG+RL RPA +I I D
Sbjct: 3   ALPEGQMTSITQVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C  +    C +  +C L  VL +A +AF   L Q ++  L+ +   +
Sbjct: 63  VVRELE-PLTLVNCSQAF---CHITPACRLKQVLHRATDAFLAELDQCTLADLIEHNPPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|283850155|ref|ZP_06367444.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
 gi|283574181|gb|EFC22152.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
           FW1012B]
          Length = 145

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y IR +++ ++H D P     +IAEA  I   FL K+ Q L +AGI+   +G
Sbjct: 1   MRLTRAGEYAIRCVLHLSMHRDRPVITRKEIAEAMDIPAQFLGKVAQHLARAGIIAIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+L +V+A +   F+ +C +  +  C     C +  V  KA +   
Sbjct: 61  AQGGYELVRRPEDITLLSLVEAIDGEIFLNDCISRPE-SCDRRKLCSVHRVWDKARSQLR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   ++  L    S 
Sbjct: 120 ETLGSTTLAALAETESK 136


>gi|206901224|ref|YP_002251262.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
 gi|206740327|gb|ACI19385.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
          Length = 144

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ + +YG+R ++Y   +       +SQI++   IS  FL +++  L +A ++E+ +G 
Sbjct: 3   RVSAKLEYGLRAMIYLGENYPHEKVTLSQISQKENISREFLAQLMSDLRRANLIESYKGI 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +P  +IT+ ++ +A E    + +C       C    +C   SV R       D
Sbjct: 63  TGGYTLTKPPKEITLKEIFEALEGPIQIIDCIHLEN-KCERENTCYSKSVWRFIEKKIID 121

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           +L + ++E L+      +++  
Sbjct: 122 LLGKLTLEDLINGTIRKEEVLT 143


>gi|254515045|ref|ZP_05127106.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
 gi|219677288|gb|EED33653.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
          Length = 137

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 73/131 (55%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+LM+CAIH     RI  +A A  IS+  L K  + L + G + T RGR GG++L    
Sbjct: 1   MRILMHCAIHPGRIVRIQDVATAFGISKAHLLKSARHLGQLGYLSTSRGRNGGIQLGMAP 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           ++I +  V++  E+S    ECF SH   CP+VG C LT + RK L AF+  L   S+  +
Sbjct: 61  ERIFVGKVIRELEDSGDFVECFNSHTNTCPIVGPCKLTGLFRKGLEAFYKELDDVSLADI 120

Query: 131 VRNRSSIKKIF 141
           V +  +++   
Sbjct: 121 VGDGRALRDRL 131


>gi|300023866|ref|YP_003756477.1| Rrf2 family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525687|gb|ADJ24156.1| transcriptional regulator, Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 523

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  +   A H D     +S +AE   +   +L ++  PL ++G+VE+ RG
Sbjct: 1   MELTTKGRYAVMAMADLAAHADRTAVPLSSVAERQHLPLSYLEQLFVPLRRSGLVESARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL +  ++I+I  V+ A EE      C   +   C +   C    +      A  
Sbjct: 61  RAGGYRLSKKPEEISIAAVMAAVEEVTHFTRC-TDNDPRCSVGTPCLTHGLWSALSRATS 119

Query: 120 DVLTQYSIECLV 131
           + L   S+  ++
Sbjct: 120 EFLESVSLADVL 131


>gi|125974347|ref|YP_001038257.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|281418894|ref|ZP_06249912.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|125714572|gb|ABN53064.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
 gi|281407351|gb|EFB37611.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
          Length = 149

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +  YG+R ++  A++ N     ++ IAE   IS  +L ++   L K+G+V++ +G
Sbjct: 1   MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
            +GG  L      I +  +++A E    V +       +       C   +V  K   + 
Sbjct: 61  AQGGYMLSEVPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            +++   ++E L  +      I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142


>gi|196250088|ref|ZP_03148782.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
 gi|196210272|gb|EDY05037.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           G11MC16]
          Length = 138

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  + D P  +  IA A  +SE +L +++ PL  AG+V+++RG
Sbjct: 1   MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  D+++  E      E     +             +  +  +A  
Sbjct: 61  AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEP--------AKRELWIRIRDAVE 112

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L +
Sbjct: 113 EVLDSTTLEDLAK 125


>gi|302550950|ref|ZP_07303292.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302468568|gb|EFL31661.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 152

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  +       +AE   +    L K++  L   G++   RGR
Sbjct: 9   MRLLRSTDLALRVLMRLAVAGESSPTTRDVAEGMDVPYTHLAKVVAELQHMGLLTARRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+A E    V +C       CPL  +C L   LR+A  AFF 
Sbjct: 69  GGGLSLTERGRSASVGAVVRAFEGDGDVVDC--EGPTPCPLNSACRLRVALRRAQEAFFA 126

Query: 121 VLTQYSIECLVRNRSS 136
            L   ++  +V   + 
Sbjct: 127 SLDPITVADIVAEPTG 142


>gi|325263740|ref|ZP_08130473.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324030778|gb|EGB92060.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 146

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A +  + P  + Q A+   IS  +L ++   L KAGIV +V+G
Sbjct: 1   MKVSTKGRYGLRALVDMAANSQEGPISLIQTAKRQNISLNYLEQVFGVLRKAGIVVSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R AD IT+ ++++A E  F + +     + D        L  V  +  N   
Sbjct: 61  AGGGYKLARSADSITVKEILEALEGEFSIIDKNGEEEADPVQKAIQEL--VWDEIDNKVN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L + ++  LVR    
Sbjct: 119 EFLGKRTLAQLVREYRE 135


>gi|219667205|ref|YP_002457640.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|219537465|gb|ACL19204.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 147

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A+H+      +S IAE   ISE +L ++   L KAGI+ +V+G
Sbjct: 1   MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L   A +I +  +++  E    VA      +     +  C    V  +      
Sbjct: 61  AQGGYVLADKAAEIKVGTILRVLEGELSVAN-EELPQEGGVSIQECIQVKVWDQMTERIN 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           +++   ++E LV   + +
Sbjct: 120 ELVDSLTLEDLVHEYNVM 137


>gi|124268159|ref|YP_001022163.1| BadM/Rrf2 family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260934|gb|ABM95928.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
           petroleiphilum PM1]
          Length = 184

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HLT   +YG+  L++     +       +AE   IS  F+ KI   L KAGIV    G R
Sbjct: 3   HLTSSVEYGLHCLLWLVDAGETQPSSRDLAELQGISPSFVAKIFPKLEKAGIVAASAGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPA++IT+LDVV A E    + +C         F          G C + +V+ 
Sbjct: 63  GGYRLARPAERITVLDVVDAIEGDKPLFDCQEIRGRCAVFEGEAPRWATGGVCAIHAVML 122

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  +  D L Q ++  L 
Sbjct: 123 RAEKSMRDALAQETLAGLA 141


>gi|27364702|ref|NP_760230.1| transcriptional repressor NsrR [Vibrio vulnificus CMCP6]
 gi|37681247|ref|NP_935856.1| transcriptional repressor NsrR [Vibrio vulnificus YJ016]
 gi|320155095|ref|YP_004187474.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           MO6-24/O]
 gi|81448739|sp|Q8DCU1|NSRR_VIBVU RecName: Full=HTH-type transcriptional repressor nsrR
 gi|81859821|sp|Q7MH10|NSRR_VIBVY RecName: Full=HTH-type transcriptional repressor nsrR
 gi|27360847|gb|AAO09757.1| Nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           CMCP6]
 gi|37199998|dbj|BAC95827.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319930407|gb|ADV85271.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
           MO6-24/O]
          Length = 141

 Score =  140 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TDY +R L+Y A   D     I+ + E   +S   + K++  L +   ++TVRG
Sbjct: 1   MQLTSFTDYALRTLIYLASLPDNEQTNITDVTELFGVSRNHMVKVINRLGQLNYIQTVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+RL RPA  I + +VV+  E    +  C       C +  +C L   L +A  AF 
Sbjct: 61  KNGGIRLNRPAKTILVGEVVRDLE-PLDLVNCSVEF---CHITPACRLKERLYRAKLAFL 116

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
             L   SI  L+ + + +  +  
Sbjct: 117 AELDDCSIAELLDDNAELLILLQ 139


>gi|172057146|ref|YP_001813606.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989667|gb|ACB60589.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 146

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IR L++   + D   RI ++A+   IS+  L K++  L + G++ +VRGR
Sbjct: 1   MRMTRYTDYAIRSLLFAGANADRLVRIQEVADCYDISKNHLMKVVYRLGQNGLIHSVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL  P D+I I DVV+  E +    +          L  +         A+ AF  
Sbjct: 61  GGGFRLASPPDEIYIGDVVQLFEPTTHFLDPLEGTSELPSLDPA---RDAFDDAIAAFHQ 117

Query: 121 VLTQYSIECLVRN-RSSIKKIFN 142
           VL  Y+I  L+    S+ ++I  
Sbjct: 118 VLNSYTINDLLHPTNSTHRQILE 140


>gi|330821657|ref|YP_004350519.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373652|gb|AEA65007.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 177

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           H++   +YG+  L+Y A          +  +AE   +   FL K+   L KAG+V    G
Sbjct: 3   HISTGVEYGLHCLLYLAEPASGMREASVRDLAELQGVPLDFLAKLFTKLHKAGLVIATEG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
            +GG  L RPADQI++LDVV A +    + EC         F   K      G C + SV
Sbjct: 63  AKGGFALARPADQISVLDVVSAIDGDKSLFECREVRERCAVFEGTKPAWATSGVCAIHSV 122

Query: 111 LRKALNAFFDVLTQYSIECLVRN 133
           +++A     + L   S+  +   
Sbjct: 123 MQQAEKKMRESLASQSLADIAER 145


>gi|297584735|ref|YP_003700515.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297143192|gb|ADH99949.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           selenitireducens MLS10]
          Length = 139

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ ++M  A  + + P  +  IA    +SE +L +++ PL  A +V++VRG
Sbjct: 1   MKISTKGRYGLTIMMALARKYGEGPVSLKSIAHEHALSEHYLEQLIAPLRNAALVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR-KALNAF 118
             GG  L +  + IT  DV++  E      E     +              LR K  +A 
Sbjct: 61  AYGGYMLAKEPESITAGDVIRVLEGPITPVEIIDDEEPA---------KRDLRIKIRDAV 111

Query: 119 FDVLTQYSIECLVR 132
            DVL   ++E L  
Sbjct: 112 KDVLDSTTLEDLAN 125


>gi|326797990|ref|YP_004315809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sphingobacterium sp. 21]
 gi|326548754|gb|ADZ77139.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
           21]
          Length = 145

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K++ Y I+ L+    +    P +I +IAE   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKSKYAIKALIVLGKNYGKEPMQILKIAEEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I +  V++ T+    +  C    F     +C    +CG+        NA
Sbjct: 62  GGYSLNKDPEDIRLSQVIRLTDGPIALLPCVSLNFYRRCDECKTEETCGIRDTFVDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   SI  +++   ++
Sbjct: 122 MLQILNDTSIADIIKREENL 141


>gi|219871543|ref|YP_002475918.1| transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219691747|gb|ACL32970.1| transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 147

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY  RVLMY A H D    I Q+AE+  +S+  L K++  + K G + T RG+
Sbjct: 1   MHLSKFTDYAFRVLMYLAHHQDELRTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+      + + +V++  + +  + +C   +   C L   C L SVL  AL  F+ 
Sbjct: 61  GGGIRISSLILSMPVGEVIRTLQGNPRLIDC---NSPACILKPHCHLKSVLDHALEHFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QYSI   + ++  IK I 
Sbjct: 118 YLNQYSISECIGSQKLIKGIL 138


>gi|89896939|ref|YP_520426.1| hypothetical protein DSY4193 [Desulfitobacterium hafniense Y51]
 gi|89336387|dbj|BAE85982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 147

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A+H+      +S IAE   ISE +L ++   L KAGI+ +V+G
Sbjct: 1   MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L   A +I +  +++  E    VA      +     +  C    V  +      
Sbjct: 61  AQGGYVLADRAAEIKVGTILRVLEGDLSVAN-EELPQEGGVSIQECIQVKVWDQMTERIN 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           +++   ++E LV   + +
Sbjct: 120 ELVDSLTLEDLVHEYNVM 137


>gi|313898097|ref|ZP_07831636.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
 gi|312957125|gb|EFR38754.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
          Length = 137

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +  ++  A  N     I  IA+A   S  +L +I + L KA ++ ++RG+
Sbjct: 1   MKISTKGIYALEAMIELASRNTACVSIRDIADARNCSVKYLEQIFKQLKKAQLLISIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG ++ +  ++IT  D++ A EE      C +     C   G C    V        + 
Sbjct: 61  DGGYQIAKDPEEITAKDIILAVEEKLDPVVCLS---HTCTRSGICRTQPVWMGMQEQIYK 117

Query: 121 VLTQYSIE---CLVRNR 134
           VL   +++    + RN 
Sbjct: 118 VLESKTLKYLTDIYRNE 134


>gi|299537268|ref|ZP_07050571.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
 gi|298727509|gb|EFI68081.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
          Length = 166

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   +  +    I  ++E   +SE +L K+L  L K GIV +V G
Sbjct: 1   MKYSVMVEYALHSLVYLIDVPKNESIGIKDLSEFQGLSETYLSKVLGKLSKEGIVSSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108
            +GG RL R  + IT  DVV+A E    + +C                  C    +C + 
Sbjct: 61  VKGGYRLNRKPEDITFWDVVRAVEGEEPIFQCKNIKANFAYLNKKQKCESCSSQSNCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
           SV+ +A     + L   +I  L
Sbjct: 121 SVMLEAEEHMRNYLRSKTIAWL 142


>gi|197118861|ref|YP_002139288.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197088221|gb|ACH39492.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 153

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    + + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +IT    ++  E       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYFLGRHPGKITFGQAIRVMEGPLAPVPCVSETAYAKCTECENELTCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              +L   ++  ++    + ++
Sbjct: 122 MAVILDGTTLADVLEKIDTAEQ 143


>gi|38637899|ref|NP_942873.1| hypothetical protein PHG235 [Ralstonia eutropha H16]
 gi|32527237|gb|AAP85987.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 148

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R+L+Y A H +      +IA+A  IS   L K+   L + G + TVRGR
Sbjct: 1   MRLTTMTDYALRLLIYVARHPERMCTNDEIAQAYGISRAHLVKVTHKLSRQGWIATVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L      I + DVV++ E  F +    A             L  V+  A  +F  
Sbjct: 61  GGGMQLSSGPGSINLGDVVRSVEPDFDLVAGLADGSAR-KFASDEHLCRVMDGARWSFLQ 119

Query: 121 VLTQYSIECLV 131
            L  +++  L+
Sbjct: 120 YLESFTLADLL 130


>gi|119386877|ref|YP_917932.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119377472|gb|ABL72236.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 182

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y A H D    I   A A  IS   L K+   L +AG + +VRGR
Sbjct: 48  MRLTSFSDYALRLLIYAARHPDRLVTIEGAALAYDISRSHLTKVANVLTRAGFLNSVRGR 107

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R    + + +V++ TE     AECF   +I  P      L + +R AL AF  
Sbjct: 108 SGGLELGRDPAALRLGEVLRVTEPDMAAAECFGPEEIRDPNRPG-ALDAAIRDALAAFLQ 166

Query: 121 VLTQYSIECLVRNRSS 136
           V+ + ++  L+ +   
Sbjct: 167 VMDRRTLADLLADEQE 182


>gi|319652366|ref|ZP_08006482.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
 gi|317395828|gb|EFV76550.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
          Length = 164

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   H  D    I +++    +SE +L KI   L K GIV +V G
Sbjct: 1   MQYSIGVEYALHCLVYLIDHTEDSSIGIKELSTFQGVSETYLSKIFSKLSKNGIVSSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVG-SCGLTSVL 111
            +GG +L +  ++I+  DV++A E    + +C       +      C     SC +  V+
Sbjct: 61  VKGGYKLAKSPEEISFWDVIEAVEGPKPIFQCKNIKDNGYLYRDNTCSSAPSSCTINLVM 120

Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
             A     D L   ++  L      + ++ 
Sbjct: 121 LSAEEKMRDFLRSKTLSWL---NEELDRVL 147


>gi|90579379|ref|ZP_01235189.1| hypothetical transcriptional regulator [Vibrio angustum S14]
 gi|90440212|gb|EAS65393.1| hypothetical transcriptional regulator [Vibrio angustum S14]
          Length = 158

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 14  LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES    +C    K DC     C   ++           L   ++  L++
Sbjct: 61  IAVGMVIAAVDESVDATKCHG--KGDCQGGARCLTHTLWHDLSERISGFLNNITLGELMK 118

Query: 133 NRS 135
           +  
Sbjct: 119 DND 121


>gi|196037505|ref|ZP_03104816.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196044146|ref|ZP_03111382.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225862920|ref|YP_002748298.1| hypothetical protein BCA_1009 [Bacillus cereus 03BB102]
 gi|229183282|ref|ZP_04310512.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|196024785|gb|EDX63456.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196031747|gb|EDX70343.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|225789674|gb|ACO29891.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|228600421|gb|EEK58011.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
          Length = 168

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L K GIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|118476599|ref|YP_893750.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|118415824|gb|ABK84243.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
          Length = 170

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L K GIV +V G
Sbjct: 3   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 63  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 122

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 123 LVMLEAEEHMREFLRKKTLAWL 144


>gi|30261095|ref|NP_843472.1| hypothetical protein BA_0967 [Bacillus anthracis str. Ames]
 gi|47526250|ref|YP_017599.1| hypothetical protein GBAA_0967 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183932|ref|YP_027184.1| hypothetical protein BAS0909 [Bacillus anthracis str. Sterne]
 gi|165871693|ref|ZP_02216338.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635503|ref|ZP_02393816.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638963|ref|ZP_02397237.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170687574|ref|ZP_02878790.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170707938|ref|ZP_02898387.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177653587|ref|ZP_02935761.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190566555|ref|ZP_03019472.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227816175|ref|YP_002816184.1| hypothetical protein BAMEG_3602 [Bacillus anthracis str. CDC 684]
 gi|229601398|ref|YP_002865526.1| hypothetical protein BAA_1065 [Bacillus anthracis str. A0248]
 gi|254682847|ref|ZP_05146708.1| hypothetical protein BantC_03205 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725633|ref|ZP_05187415.1| hypothetical protein BantA1_24776 [Bacillus anthracis str. A1055]
 gi|254734259|ref|ZP_05191972.1| hypothetical protein BantWNA_03713 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740092|ref|ZP_05197784.1| hypothetical protein BantKB_03564 [Bacillus anthracis str. Kruger
           B]
 gi|254753432|ref|ZP_05205468.1| hypothetical protein BantV_13223 [Bacillus anthracis str. Vollum]
 gi|254758530|ref|ZP_05210557.1| hypothetical protein BantA9_09484 [Bacillus anthracis str.
           Australia 94]
 gi|30254709|gb|AAP24958.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47501398|gb|AAT30074.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177859|gb|AAT53235.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164712594|gb|EDR18126.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513093|gb|EDR88465.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167529121|gb|EDR91875.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170127098|gb|EDS95976.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170668387|gb|EDT19134.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172081391|gb|EDT66465.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190562107|gb|EDV16075.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003551|gb|ACP13294.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229265806|gb|ACQ47443.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 168

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L K GIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|65318375|ref|ZP_00391334.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
          Length = 168

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L K GIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|95930591|ref|ZP_01313326.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133426|gb|EAT15090.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
           acetoxidans DSM 684]
          Length = 151

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ T+Y IR ++Y +            I +   ++  FL KI QP+VKAGIV + RG
Sbjct: 1   MVITRATEYAIRAILYMSKFPPGEIVLKKDICQTQNVTPAFLTKIFQPMVKAGIVGSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    + IT+ DV KA E+   + +C       C     C +    ++   +  
Sbjct: 61  VGGGFYLRHKPEDITVYDVFKAQEDPLHINKCLGDENC-CERDNYCPVHGAWKEVRESMI 119

Query: 120 DVLTQYSIECLVRNRSS-IKKIF 141
             L++Y+   L     + +KK+ 
Sbjct: 120 QQLSEYNFARLAEEEEANLKKLM 142


>gi|138896135|ref|YP_001126588.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267648|gb|ABO67843.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
          Length = 139

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  + D P  +  IA A  +SE +L +++ PL  AG+V+++RG
Sbjct: 2   MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     +IT  D+++  E      E     +             +  +  +A  
Sbjct: 62  AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEP--------AKRELWIRIRDAVE 113

Query: 120 DVLTQYSIECLVR 132
           +VL   ++E L +
Sbjct: 114 EVLDSTTLEDLAK 126


>gi|297588298|ref|ZP_06946941.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
 gi|297573671|gb|EFH92392.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
          Length = 135

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ ++++  EE F V EC A   + C    +C    +  +  +   
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSAVPGL-CSREDTCPSRLIWTQMHDDMI 119

Query: 120 DVLTQYSIECLVRNRS 135
           + +   S++ L+    
Sbjct: 120 NSIKNVSLQDLISKEK 135


>gi|134300796|ref|YP_001114292.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
           reducens MI-1]
 gi|134053496|gb|ABO51467.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           reducens MI-1]
          Length = 137

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R ++Y +            IAE   I   FL KIL+ L  AGI+E+ RG
Sbjct: 1   MKLNQATDYAFRAVLYLSRLPKGQVSEAKAIAEQENIPIRFLLKILRSLTAAGIIESYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R    IT+LDVV+A E    V  C  A    +      C +   L       
Sbjct: 61  VSGGYALAREPKDITMLDVVEAVEGPVEVNRCLIAPESCNKNHTARCPMHRALYAIQQNL 120

Query: 119 FDVLTQYSIECL 130
              L  Y+   L
Sbjct: 121 NQQLNSYNFADL 132


>gi|167856368|ref|ZP_02479095.1| sec-independent translocase [Haemophilus parasuis 29755]
 gi|167852506|gb|EDS23793.1| sec-independent translocase [Haemophilus parasuis 29755]
          Length = 147

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TDY  RVLMY A H D  + I Q+AE+  +S+  L K++  + K G + T RG+
Sbjct: 1   MHLSKFTDYAFRVLMYLAHHQDEVHTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+R+      + + +V++  + +  + +C   +   C L   C L SVL  AL  F+ 
Sbjct: 61  GGGIRISSLILSMAVGEVIRTLQGNPRLIDC---NSPACILKPHCHLKSVLDHALEHFYQ 117

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L QYS+   + ++  IK I 
Sbjct: 118 YLNQYSVSECIGSQKVIKGIL 138


>gi|197105185|ref|YP_002130562.1| predicted transcriptional regulator [Phenylobacterium zucineum
           HLK1]
 gi|196478605|gb|ACG78133.1| predicted transcriptional regulator [Phenylobacterium zucineum
           HLK1]
          Length = 144

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  +   A           ++ IA    IS  +L ++   L + G+V++ 
Sbjct: 1   MRLSTKGRYAVMAMADLARREGEAARAVALADIAARQEISLSYLEQLFARLRRKGLVKSA 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG RL R A+Q +I ++V A +E      C  + K        C    +       
Sbjct: 61  RGPGGGYRLARTAEQTSIAEIVHAVDEPLRATRCANAGKGCMTRGERCLTHDLWADLGQQ 120

Query: 118 FFDVLTQYSIECLVRNR 134
               L   ++  ++  R
Sbjct: 121 IEHYLASVTLADVIGGR 137


>gi|163814456|ref|ZP_02205845.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
 gi|158450091|gb|EDP27086.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
          Length = 144

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 67/136 (49%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +  Y +R+++  +I++     +  +A  C +S+ +L ++   L+KAG + +VRG 
Sbjct: 1   MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL  PA++IT+  V++  E      +       D  +V +  +  V      A  +
Sbjct: 61  RGGYRLNTPAEEITVGMVLREIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLETAINN 120

Query: 121 VLTQYSIECLVRNRSS 136
           VL   +I  L R  S 
Sbjct: 121 VLDNKTIADLTREYSD 136


>gi|94312314|ref|YP_585524.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356166|gb|ABF10255.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
          Length = 155

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY +  +   P  I+++ +   IS   L K+   L K G +   RG
Sbjct: 6   MQLTRFSDYALRLLMYVSRGDGSRPITIAEVGQQFDISHNHLVKVAARLSKLGWISATRG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++++  +++  E    + +C       C L G+C L   L  A  AF+
Sbjct: 66  RHGGLQLGPGAEKLSVGAILRELEGRKAIIDCAD---PPCALNGNCRLKRALDDAEEAFY 122

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +  +R++
Sbjct: 123 RALDGVTLADVSGSRTA 139


>gi|325292198|ref|YP_004278062.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
           sp. H13-3]
 gi|325060051|gb|ADY63742.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
           sp. H13-3]
          Length = 153

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++++  Y +R L+  A  +   P +IS IA    I + FL +IL  + K  IVE+ RG++
Sbjct: 9   ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 68

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA  IT  +V++  +       C +        DC     C +  V  +  +A
Sbjct: 69  GGYLLARPAADITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 128

Query: 118 FFDVLTQYSIECLVR 132
             ++L   ++   V 
Sbjct: 129 TRNILFNTTVADAVA 143


>gi|300821270|ref|ZP_07101418.1| Rrf2 family protein [Escherichia coli MS 119-7]
 gi|300899716|ref|ZP_07117942.1| Rrf2 family protein [Escherichia coli MS 198-1]
 gi|300922416|ref|ZP_07138536.1| Rrf2 family protein [Escherichia coli MS 182-1]
 gi|300940665|ref|ZP_07155226.1| Rrf2 family protein [Escherichia coli MS 21-1]
 gi|300949137|ref|ZP_07163179.1| Rrf2 family protein [Escherichia coli MS 116-1]
 gi|300957838|ref|ZP_07170016.1| Rrf2 family protein [Escherichia coli MS 175-1]
 gi|300987257|ref|ZP_07178086.1| Rrf2 family protein [Escherichia coli MS 45-1]
 gi|300988644|ref|ZP_07178784.1| Rrf2 family protein [Escherichia coli MS 200-1]
 gi|301023423|ref|ZP_07187206.1| Rrf2 family protein [Escherichia coli MS 69-1]
 gi|301646624|ref|ZP_07246490.1| Rrf2 family protein [Escherichia coli MS 146-1]
 gi|309796989|ref|ZP_07691389.1| Rrf2 family protein [Escherichia coli MS 145-7]
 gi|300305877|gb|EFJ60397.1| Rrf2 family protein [Escherichia coli MS 200-1]
 gi|300315469|gb|EFJ65253.1| Rrf2 family protein [Escherichia coli MS 175-1]
 gi|300356727|gb|EFJ72597.1| Rrf2 family protein [Escherichia coli MS 198-1]
 gi|300397010|gb|EFJ80548.1| Rrf2 family protein [Escherichia coli MS 69-1]
 gi|300407734|gb|EFJ91272.1| Rrf2 family protein [Escherichia coli MS 45-1]
 gi|300421235|gb|EFK04546.1| Rrf2 family protein [Escherichia coli MS 182-1]
 gi|300451385|gb|EFK15005.1| Rrf2 family protein [Escherichia coli MS 116-1]
 gi|300454553|gb|EFK18046.1| Rrf2 family protein [Escherichia coli MS 21-1]
 gi|300526159|gb|EFK47228.1| Rrf2 family protein [Escherichia coli MS 119-7]
 gi|301075171|gb|EFK89977.1| Rrf2 family protein [Escherichia coli MS 146-1]
 gi|308119402|gb|EFO56664.1| Rrf2 family protein [Escherichia coli MS 145-7]
 gi|315288459|gb|EFU47857.1| Rrf2 family protein [Escherichia coli MS 110-3]
 gi|315293540|gb|EFU52892.1| Rrf2 family protein [Escherichia coli MS 153-1]
 gi|315299059|gb|EFU58313.1| Rrf2 family protein [Escherichia coli MS 16-3]
 gi|323171610|gb|EFZ57256.1| rrf2 family protein family protein [Escherichia coli LT-68]
 gi|324005241|gb|EGB74460.1| Rrf2 family protein [Escherichia coli MS 57-2]
 gi|324013821|gb|EGB83040.1| Rrf2 family protein [Escherichia coli MS 60-1]
          Length = 125

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL +PA  I I D
Sbjct: 3   SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     +
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|83590920|ref|YP_430929.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573834|gb|ABC20386.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica
           ATCC 39073]
          Length = 136

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R ++Y A +          IA    I   FL KI++ LV+AGIV++ RG
Sbjct: 1   MRLNQATDYAFRAVLYLAKLEPGTIAEAQMIASREDIPMRFLLKIMRSLVQAGIVQSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
             GG  L RPA +IT+LDVV+A E    V  C    +  C       C +   L    +A
Sbjct: 61  VSGGFALARPAREITLLDVVEAVEGPVSVNRCLLDPEY-CNKHGAPCCPVHRALGAVQDA 119

Query: 118 FFDVLTQYSIECLV 131
               L +Y+   L 
Sbjct: 120 LRRELKRYNFAELA 133


>gi|85704358|ref|ZP_01035461.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
 gi|85671678|gb|EAQ26536.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
          Length = 156

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TDY +RVL+Y A +       I + +    IS   L K++  L+  G +E VRG
Sbjct: 1   MRLTKFTDYSLRVLLYAATLKPKQLTTIEETSNLYGISRAHLKKVVLGLIHEGFLEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL  PA +I +  +++ TE  F +AECF      C +   C L  VL  AL+ F 
Sbjct: 61  RSGGFRLAMPAHEINLGQLLRKTEPDFALAECFLPENA-CRVTKGCRLPIVLNLALSNFL 119

Query: 120 DVLTQYSIECLV 131
                +++  + 
Sbjct: 120 KTFDDFTLADVA 131


>gi|258514866|ref|YP_003191088.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778571|gb|ACV62465.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 144

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++T+Y I  ++  A         I QIA    I E+FL K +Q L K+GIV T RG
Sbjct: 1   MQITRQTEYAIHAVIELAQIPFGDFVLIRQIANKLNIPEMFLKKTVQALNKSGIVVTQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL RP+D++T+ DV+ A E    +  C       C     C +  +L++   A  
Sbjct: 61  TNGGVRLSRPSDKLTVADVMAAIEGPLMLNVCLG-ENYQCSNKPFCSIHKILQRTQKAVL 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L++ +   +++N+  ++K
Sbjct: 120 RELSRETFADIIKNKLRLEK 139


>gi|310643721|ref|YP_003948479.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309248671|gb|ADO58238.1| Putative transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 132

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y +  ++     +   P  + Q+AEA  +S  +L KIL  LVKAG++E+V G
Sbjct: 1   MKFTKATNYALHTMLMLVTDSSVKPIGVQQLAEAQQVSPTYLSKILTRLVKAGMIESVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  D IT LD++ A E +  + EC   H         C + +V+R+A     
Sbjct: 61  ANGGYRLSRNKDDITFLDIIHAIEGTNSLFECDFVH------GSECLIQAVMREAEEKME 114

Query: 120 DVLTQYSIECLVRNRSSI 137
             L    +  L + ++ I
Sbjct: 115 SHLKNTKLVDLAQKQAQI 132


>gi|163740100|ref|ZP_02147503.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
           BS107]
 gi|161386649|gb|EDQ11015.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
           BS107]
          Length = 149

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  +TDY +R+L+  A   +    I  ++    +    + KI+  LV+ G V ++RGR
Sbjct: 1   MKLNLKTDYALRLLILLATRPEQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV++ R   +I + D+V A  E   + +C +     C LVG+C L  VL +A  AF +
Sbjct: 61  SGGVQIGRKPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115

Query: 121 VLTQYSIECLVRNRSSI 137
           VL  Y +  L+   + +
Sbjct: 116 VLMAYRLSDLIEAPAPV 132


>gi|257792012|ref|YP_003182618.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|257475909|gb|ACV56229.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
          Length = 144

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R+++  A    +    + +++E   IS  +L ++ +PLV+AG++ +VRG
Sbjct: 1   MLVSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L +    I   DV++A E S     C      + CP  G C             
Sbjct: 61  KGGGYALAQEPAAIRAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVI 120

Query: 119 FDVLTQYSIECLV 131
              +   ++  L 
Sbjct: 121 ERYVDGVTLADLA 133


>gi|284046052|ref|YP_003396392.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Conexibacter woesei DSM 14684]
 gi|283950273|gb|ADB53017.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
           DSM 14684]
          Length = 152

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +TDY +R  +  A + +++P +  +IA A  I   FL  IL  L + GIV + RG
Sbjct: 1   MRISAKTDYAVRAAVELAAVTDEHPLKSERIATAQEIPLRFLENILVQLRQGGIVVSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL  P ++IT+ DV++A +            K+D        L  V      +  
Sbjct: 61  AEGGYRLALPPEEITVADVIRAIDGPLAAVSGERPEKLDFHGTAE-PLREVWVAVRASLR 119

Query: 120 DVLTQYSIECLV 131
           DVL   ++  L 
Sbjct: 120 DVLEHVTLADLA 131


>gi|331000240|ref|ZP_08323924.1| HTH-type transcriptional regulator IscR [Parasutterella
           excrementihominis YIT 11859]
 gi|329572406|gb|EGG54059.1| HTH-type transcriptional regulator IscR [Parasutterella
           excrementihominis YIT 11859]
          Length = 151

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H  +    I+ I +   +S  +L +I   L +AG++E VRG
Sbjct: 1   MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PADQIT++D+++A ++    A C   ++  C   G C    +         
Sbjct: 61  PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119

Query: 120 DVLTQYSIECLVRNRS 135
             L   S++ L   + 
Sbjct: 120 KFLKGISLKNLADKKK 135


>gi|312792436|ref|YP_004025359.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877006|ref|ZP_07736980.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796237|gb|EFR12592.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312179576|gb|ADQ39746.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 137

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY +R++++ +           IA+   I + FL KI + LVKAGI+E+VRG+
Sbjct: 1   MKLTQAADYALRMVLHLSKKRGMVVEADTIAQEEKIPKRFLLKISRDLVKAGIIESVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L +  ++IT+ DV+ A E +  +  C       +    G C +       +    
Sbjct: 61  NGGYTLAKKPEEITMKDVIIAVEGTLALTRCLYDPLACNKKATGYCAVHKAFCSVMEKVS 120

Query: 120 DVLTQYSIECLV 131
           D L +Y+ + LV
Sbjct: 121 DELEKYTFDKLV 132


>gi|229016279|ref|ZP_04173227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229022516|ref|ZP_04179048.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228738769|gb|EEL89233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228745050|gb|EEL95104.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 168

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KA IV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCDPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|229028761|ref|ZP_04184868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|228732543|gb|EEL83418.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
          Length = 168

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KA IV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|159184477|ref|NP_353841.2| hypothetical protein Atu0819 [Agrobacterium tumefaciens str. C58]
 gi|159139787|gb|AAK86626.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 146

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++++  Y +R L+  A  +   P +IS IA    I + FL +IL  + K  IVE+ RG++
Sbjct: 2   ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA  IT  +V++  +       C +        DC     C +  V  +  +A
Sbjct: 62  GGYLLARPASDITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 121

Query: 118 FFDVLTQYSIECLVR 132
             ++L   ++   V 
Sbjct: 122 TRNILFNTTVADAVA 136


>gi|299144222|ref|ZP_07037302.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518707|gb|EFI42446.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 132

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +   +++  + P  I+ IA+   +SE +L ++   L K  +V+++RG
Sbjct: 1   MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +I I +++ A E    ++    + K +C  V +C    +L K      
Sbjct: 61  AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE 120

Query: 120 DVLTQYSIECL 130
           +VL   ++  +
Sbjct: 121 EVLDSMTLADM 131


>gi|121997341|ref|YP_001002128.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588746|gb|ABM61326.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 150

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 64/135 (47%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + + TDYG+ +L   A         +Q+A A  + +  + K+++ LV AG++ + RG +
Sbjct: 3   RINRETDYGVVILSAMARRPGERVNAAQLAGAHGLPQPMVSKVMKQLVHAGLLCSYRGAK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP ++I++ +V++A E      EC  S    C  V  C  ++   +  +     
Sbjct: 63  GGYGLARPPEEISVAEVIEALEGPIAFTECVESGTDTCTHVEDCNASAAWSRISSVVRQA 122

Query: 122 LTQYSIECLVRNRSS 136
           L   S+  +    S+
Sbjct: 123 LAAVSLAEMGEPASA 137


>gi|228932374|ref|ZP_04095256.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827310|gb|EEM73062.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 168

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KA IV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|228968749|ref|ZP_04129715.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790927|gb|EEM38562.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 168

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KA IV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGVLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|228984158|ref|ZP_04144343.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775595|gb|EEM23976.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 168

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y     +     I  +AE   +SE FL K+   L KA IV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C                 C P   SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            V+ +A     + L + ++  L
Sbjct: 121 LVMLEAEEHMREFLRKKTLAWL 142


>gi|160903152|ref|YP_001568733.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160360796|gb|ABX32410.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
           SJ95]
          Length = 156

 Score =  140 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT ++ Y +R L   A+           IS+++E   I + FL KI   L  AGIV++
Sbjct: 1   MSLTVKSSYALRALFELAVLAEDEGKEKVPISELSERQNIPKDFLEKIFIELRDAGIVKS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           VRG+ GG  L +    + + ++++  ++     +C       C L   C +  V ++  N
Sbjct: 61  VRGKFGGYALAKNPKDLRLSEIIQVLDKPLQSFDCIVGE---CSLEIECAVEFVWKRVNN 117

Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
           +    L++ +++ ++     I KI
Sbjct: 118 SIMLELSKMTLQDIIDYGRKIAKI 141


>gi|194291062|ref|YP_002006969.1| hth transcriptional regulator; upf0074 [Cupriavidus taiwanensis LMG
           19424]
 gi|193224897|emb|CAQ70908.1| putative HTH transcriptional regulator; UPF0074 [Cupriavidus
           taiwanensis LMG 19424]
          Length = 150

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A  +   P  I+++ +   IS   L K+   L K G V   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++TI  +++  E    V +C       C L G+C L   L  A  AF+
Sbjct: 61  RHGGLQLGPGAERLTIGTILRELEGHRPVIDC---DNPPCALHGNCHLKRALDVAEQAFY 117

Query: 120 DVLTQYSIECL 130
             L   ++  +
Sbjct: 118 RALDDVTLADV 128


>gi|294852949|ref|ZP_06793621.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294818604|gb|EFG35604.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 166

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 145 ANVLDHRTLAD 155


>gi|302383292|ref|YP_003819115.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193920|gb|ADL01492.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 159

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M L+ +  Y +  +   A +            +++IA    IS  +L ++   L K+G+V
Sbjct: 1   MRLSTKGRYAVMAMADLARNGQGEGAEGRAVSLAEIATRQEISLSYLEQLFARLRKSGLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-SCGLTSVLR 112
            +VRG  GG RL + A +  + ++V A +E      C A S    C + G  C   ++  
Sbjct: 61  RSVRGPGGGYRLAKTAGETVVSEIVLAVDEPIRATRCAAHSSPRGCMMAGERCITHNLWE 120

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
              +     L   S+E ++ NR+  ++
Sbjct: 121 DLGDEIHRYLASVSLEDVIMNRTGPRR 147


>gi|261252066|ref|ZP_05944639.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
 gi|260935457|gb|EEX91446.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
          Length = 155

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAYS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L++
Sbjct: 61  IAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELMK 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|169824321|ref|YP_001691932.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|303234034|ref|ZP_07320683.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
 gi|167831126|dbj|BAG08042.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302494959|gb|EFL54716.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
          Length = 135

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ ++++  EE F V EC     + C    +C    +  +  +   
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119

Query: 120 DVLTQYSIECLVRNRS 135
           + +   S++ L+    
Sbjct: 120 NSIKNVSLQDLISKEK 135


>gi|17988524|ref|NP_541157.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|17984317|gb|AAL53421.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
          Length = 162

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 21  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 80

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 81  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 140

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 141 ANVLDHRTLAD 151


>gi|255525184|ref|ZP_05392127.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296187437|ref|ZP_06855832.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
 gi|255511143|gb|EET87440.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296047959|gb|EFG87398.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
          Length = 144

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ LM  A++ N     +  I+E   ISE +L +I   L K+G+V   +G
Sbjct: 1   MKISTKGRYGLKALMDIAMYSNSEAVTLKSISERQNISEGYLEQIFSALRKSGLVIGKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    ITI ++++  E +  + +       D   +  C   ++         
Sbjct: 61  AQGGYTLSKHISTITIGEILRTLEGNLSLVDIRDRDDAD--ELERCINENLWDAINKNIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D     ++E LV    S
Sbjct: 119 DYFDSITLEDLVNKYKS 135


>gi|303257496|ref|ZP_07343508.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderiales bacterium 1_1_47]
 gi|302859466|gb|EFL82545.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderiales bacterium 1_1_47]
          Length = 151

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H  +    I+ I +   +S  +L +I   L +AG++E VRG
Sbjct: 1   MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PADQIT++D+++A ++    A C   ++  C   G C    +         
Sbjct: 61  PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119

Query: 120 DVLTQYSIECLVRNRS 135
             L   S++ L   + 
Sbjct: 120 KFLKGISLKNLADKKK 135


>gi|293394859|ref|ZP_06639149.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
           odorifera DSM 4582]
 gi|291422610|gb|EFE95849.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
           odorifera DSM 4582]
          Length = 151

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H  + P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A +
Sbjct: 1   MLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDAAE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES     C    K  C     C   ++ R         L   ++  LV 
Sbjct: 61  IAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERISGFLNNITLAELVN 118

Query: 133 NRSSI 137
           N+  +
Sbjct: 119 NQEVL 123


>gi|317484710|ref|ZP_07943611.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
 gi|316924066|gb|EFV45251.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
          Length = 168

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+  A        ++++IA    +S  +L +I++ L  AGI+ + RG
Sbjct: 1   MRYSTRTRYGLRFLINLAGRPAGACVQLAEIAREEGVSVKYLEQIVRVLRPAGILRSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  D I + +V +  E      EC    K  C   G C      R+  +   
Sbjct: 61  AKGGYALAKSPDAIRMDEVFERLEGHISPVECLHGAK-SCEREGVCPTRWFWRELDDHMR 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++   V    ++K
Sbjct: 120 MFLKGMTLARFVERERALK 138


>gi|113869472|ref|YP_727961.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113528248|emb|CAJ94593.1| putative transcriptional regulator [Ralstonia eutropha H16]
          Length = 150

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +DY +R+LMY A  +   P  I+++ +   IS   L K+   L K G +   RG
Sbjct: 1   MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWISATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG++L   A+++TI  +++  E    V +C       C L G+C L   L  A  AF+
Sbjct: 61  RHGGLQLGPGAERLTIGTILRELEGHKAVIDC---DNPPCALNGNCRLKRALDVAEQAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +  ++++
Sbjct: 118 LALDDVTLADVTGSQTA 134


>gi|189023190|ref|YP_001932931.1| RRF2 family protein [Brucella abortus S19]
 gi|225686866|ref|YP_002734838.1| Rrf2 family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|237817484|ref|ZP_04596475.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|254706516|ref|ZP_05168344.1| transcriptional regulator, Rrf2 family protein [Brucella
           pinnipedialis M163/99/10]
 gi|256261998|ref|ZP_05464530.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260757261|ref|ZP_05869609.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260883065|ref|ZP_05894679.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297250169|ref|ZP_06933870.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
           bv. 5 str. B3196]
 gi|189021764|gb|ACD74485.1| RRF2 family protein [Brucella abortus S19]
 gi|225642971|gb|ACO02884.1| transcriptional regulator, Rrf2 family protein [Brucella melitensis
           ATCC 23457]
 gi|237787319|gb|EEP61536.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
           str. 2308 A]
 gi|260677369|gb|EEX64190.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872593|gb|EEX79662.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|263091482|gb|EEZ16018.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297174038|gb|EFH33402.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
           bv. 5 str. B3196]
          Length = 166

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 145 ANVLDHRTLAD 155


>gi|254421110|ref|ZP_05034834.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
 gi|196187287|gb|EDX82263.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
          Length = 146

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ R+ Y +R +++ A +    P  I +IAEA      FL  IL  L +  ++ + RGR 
Sbjct: 2   LSNRSRYALRAMIHLAGLPGGGPATIGEIAEAATAPRKFLEAILLDLRRQNLLVSKRGRT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  PA+ I+  DV++A E    +A C +         CP V +C L  VL+   +A
Sbjct: 62  GGYALAAPAETISFADVIRALEGPLALAPCASRTAHGPCETCPDVETCPLQPVLQDGRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              V    S+     N S I  +
Sbjct: 122 VAAVFEARSLLQAASNPSPIDPV 144


>gi|239907465|ref|YP_002954206.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239797331|dbj|BAH76320.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 151

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y IR ++Y A+H D       +IAEA  I   FL K+ Q L KAG++   +G
Sbjct: 1   MRLTRAGEYAIRCVLYLAMHQDRTLIGRKEIAEAMDIPAQFLGKVAQQLAKAGVISIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT+L V++A +   F+ +C       C     C + +V   A     
Sbjct: 61  SLGGYELARRPQDITLLAVIEAIDGEIFLNDCIQRPG-SCDRQAICSVHNVWDTARRQLR 119

Query: 120 DVLTQYSIECLVR 132
           D L   ++  L  
Sbjct: 120 DTLGSTTLAELAA 132


>gi|118590662|ref|ZP_01548063.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
 gi|118436638|gb|EAV43278.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
          Length = 143

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+LM     +D P  + ++++   +++  + KI+  L K G +ET RGR
Sbjct: 1   MRLSQASDFALRILM-ATGQSDDPQTVDKLSKQLGLAKSHVMKIVAHLAKGGYLETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +    I + DVV+  E    V  C       C  +  C L   + +A  AF  
Sbjct: 60  GGGIRLAKAPATIRLGDVVRLIEPDLGVVACLKPEPTVCAFLPRCALKGAMAQASEAFLA 119

Query: 121 VLTQYSIECLVR 132
            L   ++  ++ 
Sbjct: 120 SLNTETLASILA 131


>gi|46580376|ref|YP_011184.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120602251|ref|YP_966651.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46449793|gb|AAS96443.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562480|gb|ABM28224.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           DP4]
 gi|311233649|gb|ADP86503.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           RCH1]
          Length = 173

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++    Y  R+L+  A H     P   S++A+   IS  F+ KI++ L  AG+V +VR
Sbjct: 1   MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    + +T+ DV++  E       C      DC     C   +    A  A 
Sbjct: 61  GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGD--DCEDTP-CRCKTAWISAAKAL 117

Query: 119 FDVLTQYSIECLVRNRS 135
              L QY++  ++  + 
Sbjct: 118 EATLDQYTLADIMSTQP 134


>gi|152981815|ref|YP_001352304.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151281892|gb|ABR90302.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 152

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +D G+RVLMY A  +  P   ++++A    +    L K++  L K G ++ VRG
Sbjct: 1   MKLTRFSDIGLRVLMYLARESRSPSVTVAEVALQFDVPHNHLVKVVGMLAKMGWIDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L    D + I  +++  E      +C     I C L G C L + L+  ++AF+
Sbjct: 61  RNGGISLAASPDTLHIGSILRVLEGDAEAIDC---EGIGCRLSGDCRLRNALKIGVDAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + + +Y++  +V   + 
Sbjct: 118 NAMDEYTLADIVSGNTG 134


>gi|307544373|ref|YP_003896852.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
 gi|307216397|emb|CBV41667.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
          Length = 169

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++ TDY   V+   A H + P+  +++AEA  +    + K L+ LV+AG++E+ RG +
Sbjct: 19  KLSRLTDYAAVVMAQIARHPEQPHAAAELAEAVSLPHPTVSKTLKMLVRAGLLESRRGAQ 78

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA +I+  D++ A E    + EC +  + DC LV  CG++   ++   A   +
Sbjct: 79  GGYSLARPASRISASDIISAIEGPVAMTEC-SQAEGDCDLVSVCGVSDNWQRVSLAVRTL 137

Query: 122 LTQYSIECLVR 132
           L   ++  L  
Sbjct: 138 LDSVTLAHLAD 148


>gi|78358758|ref|YP_390207.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221163|gb|ABB40512.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 164

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   + YG R+L+  A+H  + P  +  +AE   +S+ +L KI + L +AG ++  RG
Sbjct: 1   MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLKEAGFLKAQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R     T+ DVV+  E    +  C    +  C     C    + ++A  A F
Sbjct: 61  PNGGHTLARDVTTFTVGDVVRLLEGGTDIVGC-GRDEEGCTHAPGCLTRMLWKEAGIAMF 119

Query: 120 DVLTQYSIECLVR 132
           + L +++   LV 
Sbjct: 120 ERLDRFTFAELVA 132


>gi|212696195|ref|ZP_03304323.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676824|gb|EEB36431.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 134

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A + D     +S I+    + E +L ++++ L K  +V + RG
Sbjct: 1   MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKKNNLVISARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R A  IT+ DV++A E     ++C A  + +C     C    V  K  +A  
Sbjct: 61  AKGGYKLSRSASDITVGDVLRALEGEMTSSQCVAD-RNNC-NNEECEAYYVFAKIDDAIN 118

Query: 120 DVLTQYSIECLVRNR 134
           + +   +I+ +V  +
Sbjct: 119 NAVNSITIKDMVNEK 133


>gi|217976745|ref|YP_002360892.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217502121|gb|ACK49530.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 149

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A +       ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGYLPGEATLVTDIATANQIPKKFLDTILGELRNAGFVNSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I +  +V+  +      +C +        DC     CG+  ++ +A NA
Sbjct: 62  GGYTLARPAHEIKVGHIVRVLDGPLAPIQCASATSYRRCDDCTDEKRCGVRLIMLEARNA 121

Query: 118 FFDVLTQYSIECL 130
             +VL   ++  +
Sbjct: 122 IAEVLDNRTLAEM 134


>gi|116622605|ref|YP_824761.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225767|gb|ABJ84476.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 141

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  DY +R++++ A + +D     + +A AC I E F+ KILQ L ++G++ + RG
Sbjct: 1   MQLTRAADYAVRMMIHLATLPSDSRTNRAALAAACEIPEPFVGKILQTLTRSGLIASHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P   +++LDV++A E    +  C       C     C    V  +A +A  
Sbjct: 61  VNGGFGLTQPPTAVSLLDVIEAVEGPTLLNICIRPGD-SCARKSWCPAHPVWVEAQHAMT 119

Query: 120 DVLTQYSIECLVRN 133
            VL + ++  L ++
Sbjct: 120 AVLGRATLASLAQS 133


>gi|260771408|ref|ZP_05880333.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
 gi|260613534|gb|EEX38728.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
 gi|315180989|gb|ADT87903.1| HTH-type transcriptional regulator iscR [Vibrio furnissii NCTC
           11218]
          Length = 163

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGSD 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A+ I+I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  
Sbjct: 61  ANTISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGE 118

Query: 130 LVRNRSSIK 138
           L+ +   ++
Sbjct: 119 LMIDNEVLE 127


>gi|154252525|ref|YP_001413349.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156475|gb|ABS63692.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 148

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++  Y ++ ++  A   +    + + IAE   +   FL  IL  L K G+V + RG+ 
Sbjct: 2   LSQKAKYALKAMIALATQEEGDLLQAADIAERQNVPRKFLELILLDLRKHGLVRSQRGKF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PAD IT   V++  +       C +        DC    SC +   +R+  +A
Sbjct: 62  GGYALAKPADAITFGQVIRIMDGPLAPIPCASLTGYRRCADCRDEKSCAVRRTMREVRDA 121

Query: 118 FFDVLTQYSIEC 129
              +L   +I  
Sbjct: 122 AAAILDGTTIAD 133


>gi|222085200|ref|YP_002543730.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722648|gb|ACM25804.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 148

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A      P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALSALAQAEAGEPTMISDIATQQKIPKKFLEQILLDLKHQGIVISRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA++IT  ++++  +       C +        DC    +C +  V  +  +A
Sbjct: 62  GGYLLRKPAEEITFGEILRIIDGPIAPLPCLSITAYRRCEDCDGEQTCEIRHVFARVADA 121

Query: 118 FFDVLTQYSIEC 129
              VL   +I  
Sbjct: 122 TRKVLFSTTIAD 133


>gi|254393536|ref|ZP_05008671.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326439617|ref|ZP_08214351.1| rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
 gi|197707158|gb|EDY52970.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 150

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R+ M  A+H+D P     ++A A  +      K++  L   G+VE  RG
Sbjct: 1   MRLTKGTDLALRIAMRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +V+  E +  V  C       CPL  +C L SVLR A  AF+
Sbjct: 61  RGGGLALTTAGRTGSIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFY 118

Query: 120 DVLTQYSIECLVRNRS 135
             L  Y+++ LV + +
Sbjct: 119 TALDPYTVDDLVASPT 134


>gi|268592506|ref|ZP_06126727.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
           DSM 1131]
 gi|291311912|gb|EFE52365.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
           DSM 1131]
          Length = 180

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H+T   +YGI  L++   + +      ++AE   IS  FL KIL  L KAGIV +  G R
Sbjct: 3   HITVSVEYGIHCLLWFVDNPERSLSSRELAELQGISPSFLAKILPRLEKAGIVSSNEGIR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTSVL 111
           GG RL  P ++IT L ++ A E    + EC            +      + G+C +  V+
Sbjct: 63  GGYRLALPPEKITFLSIIDAIEGYKPLFECQEIRRRCAVFEENGLPQWAISGTCSVHKVI 122

Query: 112 RKALNAFFDVLTQYSIECLVRNRSSI 137
            +A NA  DVL   ++  + +    I
Sbjct: 123 LQAENAMRDVLANQTLADVAQRLCQI 148


>gi|94967516|ref|YP_589564.1| BadM/Rrf2 family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549566|gb|ABF39490.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 145

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LTK+ DYG+  + + A + D        +AE   + +  L K+LQ L KAG++++ +G 
Sbjct: 3   KLTKKADYGLIAMRHLAANADLGACSAKDLAEMYGLPQEALAKLLQRLTKAGLLQSQQGT 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R    I+ LDV++A E   F+  C  + K  C     C +   LRK   +  D
Sbjct: 63  NGGYTLARNPRSISALDVIRALEGPLFMTSC-TTAKGSCEQTSKCTVREPLRKVSKSIED 121

Query: 121 VLTQYSIECLVRNRSSIKKI 140
           VL + +I  +  +   ++ +
Sbjct: 122 VLGRLTIAEMCESEEPVRDL 141


>gi|306841295|ref|ZP_07474006.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
 gi|306288697|gb|EFM60028.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
          Length = 166

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA++I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 85  GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 145 ANVLDHRTLAD 155


>gi|312116284|ref|YP_004013880.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221413|gb|ADP72781.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 150

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ ++Y A   D  P  I++IAEA  I + FL  IL  L   G++ + +G+ 
Sbjct: 2   LSAKCKYGLKAMVYIARRGDKGPVLIAEIAEAENIPKKFLDVILLELKVNGMLTSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEES-FFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
           GG +L R   +IT+ D+V+           C +        DC    +C + SV+ +  +
Sbjct: 62  GGYQLARRPGKITVADIVRVLGGPNLAPVPCVSKLNYRPCTDCRDEQTCVIRSVMLEVRD 121

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIF 141
           A   VL   ++E +     +  ++ 
Sbjct: 122 AIAAVLENVTLEEMSNRVPAAAQVL 146


>gi|161505130|ref|YP_001572242.1| transcriptional repressor NsrR [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866477|gb|ABX23100.1| hypothetical protein SARI_03264 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 125

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ I I D
Sbjct: 3   SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     +
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVRSFLKELDNYTLADLVEENQPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|258511997|ref|YP_003185431.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478723|gb|ACV59042.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 136

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +L+  A   +D P  +  IAE   +SE +L +++ PL   G V ++RG
Sbjct: 1   MKISTKGRYGLMLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I I DV+ A E    + +               GL  +  +   A  
Sbjct: 61  AYGGYVLARHPREIVIEDVLLALEGPITIVDEEIDD----------GLQVLWDRLREAIH 110

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL+  +++ LV  R  
Sbjct: 111 DVLSSMTLQDLVELRQG 127


>gi|295982422|pdb|3LWF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982423|pdb|3LWF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982424|pdb|3LWF|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
 gi|295982425|pdb|3LWF|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
           (Np_ From Listeria Innocua At 2.06 A Resolution
          Length = 159

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 9/136 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG 
Sbjct: 21  KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA 80

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L    ++IT  D+++  E    + E     +             +  +  NA  D
Sbjct: 81  HGGYVLNGDPEKITAGDIIRTLEGPIVLVESXEDEEA--------AQRELWTRXRNAVRD 132

Query: 121 VLTQYSIECLVRNRSS 136
           VL Q ++  L+++ + 
Sbjct: 133 VLDQTTLSDLLKHSTD 148


>gi|15613219|ref|NP_241522.1| hypothetical protein BH0656 [Bacillus halodurans C-125]
 gi|4512355|dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans]
 gi|10173270|dbj|BAB04375.1| BH0656 [Bacillus halodurans C-125]
          Length = 132

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A         + Q+AE   +S  +L KIL  L KAG++E+V G
Sbjct: 1   MKYSKATNYALHTVLFLAAATPSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  ++I+ LDV+ A E +  + +C  +H         C +  V+  A     
Sbjct: 61  ANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNH------GSECLIQKVMVSAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           D L +  I  L + 
Sbjct: 115 DYLREQKIADLTKK 128


>gi|294013386|ref|YP_003546846.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
           UT26S]
 gi|292676716|dbj|BAI98234.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
           UT26S]
          Length = 154

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + ++   A H        + ++    I      K++  L  AG++E+ RG
Sbjct: 1   MRLSSFADYAVVLMSAAARHCGVAKMNATTLSAETGIPLPTAQKLVSRLSAAGLLESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL RP   IT+ DVV+A E    +  C      DC L   C +   +  A NA  
Sbjct: 61  TGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIRPHMNVANNAIR 120

Query: 120 DVLTQYSIECLVRN 133
             L   +I  L R 
Sbjct: 121 SALAGVTIASLARE 134


>gi|134093901|ref|YP_001098976.1| hypothetical protein HEAR0652 [Herminiimonas arsenicoxydans]
 gi|133737804|emb|CAL60849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 151

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ +D G+RVLMY A     P   ++++A    +    L K++  L K G ++ VRG
Sbjct: 1   MKLTRFSDIGLRVLMYLAREARSPSVTVAEVAMQFDVPHNHLVKVVGALAKMGCIDAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   AD++ I DV++  E    + +C    +I C L   C L + L+  + AF+
Sbjct: 61  RNGGIHLAVAADKLLIGDVLRMLEGDTEMVDC---ERIGCRLSSDCLLRNALKVGVEAFY 117

Query: 120 DVLTQYSIECLVRNR 134
           D +  Y++  +V   
Sbjct: 118 DAMNLYTLADIVNGN 132


>gi|254490830|ref|ZP_05104013.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
           DMS010]
 gi|224464002|gb|EEF80268.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
           DMS010]
          Length = 129

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY A++ D+   I+ IA+   ISE  L K++  L +   ++T+RG+ GG+RL +   +I+
Sbjct: 1   MYLALNQDHVVTIANIADTYKISENHLTKVVHYLGQQAYIKTIRGKGGGMRLNKTPTEIS 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + D+ + TE    +  C  + + DC ++  C L ++L ++  A + V  +Y++  LV ++
Sbjct: 61  LGDLFRKTEGKAGLLPCV-NGEGDCCIMSVCRLIAILNESQQALYHVFDKYTLADLVVDK 119

Query: 135 SSIKKIFN 142
            S+ +I  
Sbjct: 120 FSLSQILT 127


>gi|71083441|ref|YP_266160.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762136|ref|ZP_01264101.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062554|gb|AAZ21557.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717938|gb|EAS84588.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
          Length = 141

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  L   A  ++  P  +  I+    IS  FL +I   L K  IV+++RG
Sbjct: 1   MKLTSKGRYAVMALADLAKFNSVNPVSLRDISLRQGISLDFLEQIFSKLKKYNIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
             GG  L +  ++I + +++ A +E     +C    K  C      C   ++  +     
Sbjct: 61  TNGGYILNKEPEEIKLANILSAVDEEVKTVQCKKESKKGCNSKTTKCITHNLWDELEVHI 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
                Q +++ L+ N S  +
Sbjct: 121 NHFFEQKNLKDLISNSSESR 140


>gi|302873942|ref|YP_003842575.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
 gi|307689807|ref|ZP_07632253.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
           cellulovorans 743B]
 gi|302576799|gb|ADL50811.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
          Length = 167

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 19/145 (13%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y I  L+Y           I  +A    ISE +L K+   L K+GIV+++ G
Sbjct: 1   MKFSVGVEYAIHCLLYMVNSEEGTSVGIRDLATFQGISETYLSKVYAKLSKSGIVKSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105
            +GG  L R A++IT  DVV+A E S    +C                     CP    C
Sbjct: 61  VKGGYALARSAEEITFWDVVEAVEGSEPFFQCAEIRQKNILLDKDNLPDTHTKCP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130
            +  V+ +A +     L+  ++  L
Sbjct: 117 LIKVVMLEAEDEMRKYLSNKTLAWL 141


>gi|150018353|ref|YP_001310607.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904818|gb|ABR35651.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 167

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y I  L+Y   +       I  +A    ISE +L K+   L KAGI++++ G
Sbjct: 1   MKFSVGVEYAIHCLLYMVKLEEGKSVGIRDLATFQGISETYLSKVYAKLSKAGIIKSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105
            +GG  L R A++IT  D+V+A E S    +C                     CP    C
Sbjct: 61  VKGGYALARSAEEITFWDIVEAVEGSESFFQCAEIRQNNILLDKDNLPDTHAKCP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130
            +  V+ +A +     L + S+  L
Sbjct: 117 LIKVVMSEAEDEMRKYLRKKSLAWL 141


>gi|238918376|ref|YP_002931890.1| transcriptional repressor NsrR [Edwardsiella ictaluri 93-146]
 gi|238867944|gb|ACR67655.1| HTH-type transcriptional regulator NsrR [Edwardsiella ictaluri
           93-146]
          Length = 124

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+       I+Q+     +S   + KI+  L +AG V  VRG+ GG+RL RPA +I I D
Sbjct: 3   ALPEGQMTSITQVTAVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C  +    C +  +C L  VLR+A +AF   L Q ++  L+ +   +
Sbjct: 63  VVRELE-PLTLVNCSQAF---CHITPACRLKQVLRRATDAFLTELDQCTLADLIEHNPPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|193213019|ref|YP_001998972.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
           NCIB 8327]
 gi|193086496|gb|ACF11772.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
           NCIB 8327]
          Length = 141

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A+   + P  + ++A     S++FL K +Q L KAGI  +V+G 
Sbjct: 3   QVSRKFEYGLHAVSYLAMKGPERPVTVKELASEIGFSQVFLAKAMQSLNKAGITRSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L RPA+QIT+ D+  A E    +  C +    DC +  +C   + +         
Sbjct: 63  KGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCDCEIESTCSHKAYMFNLQKRIQQ 121

Query: 121 VLTQYSIECLVRNRSS 136
           +L + ++  L+ N  +
Sbjct: 122 LLAETTVASLLHNYHA 137


>gi|302380671|ref|ZP_07269136.1| transcriptional regulator, Rrf2 family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311614|gb|EFK93630.1| transcriptional regulator, Rrf2 family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 135

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+  ++Y    + D P  +++I++A  +S  +L ++++ L K  +V +VRG
Sbjct: 1   MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   +I++ ++++  EE F V EC     + C    +C    +  +  +   
Sbjct: 61  VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119

Query: 120 DVLTQYSIECLV 131
           + +   S++ L+
Sbjct: 120 NSIKNVSLQDLI 131


>gi|110636622|ref|YP_676829.1| BadM/Rrf2 family transcriptional regulator [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110279303|gb|ABG57489.1| transcriptional regulator, BadM/Rrf2 family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 140

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+  Y ++ L++ + + D     I++I+E   I + FL +IL  L K GI+++ RG+ 
Sbjct: 2   LSKKAKYALKALLFLSKNTDRGVVLIAEISETEGIPKKFLEQILLELKKQGILQSKRGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA++I I  VV+  +       C +        +C    +C + ++  +  +A
Sbjct: 62  GGYFLGKPANEIGIGQVVRIIDGPLAPIPCVSKMAYRRCDECIDEKTCEIRNLFLQVRDA 121

Query: 118 FFDVLTQYSIECLVRNR 134
             ++L + S+  L +  
Sbjct: 122 TIEILDKTSLSDLEQKN 138


>gi|313888209|ref|ZP_07821883.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845899|gb|EFR33286.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 131

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  YG+  +     +    P  +  IA+   +SE +L ++   L KA +V+++RG
Sbjct: 1   MKLSTKGRYGLMAMYNLKENMGKGPIALKDIAKDENLSESYLEQLFTLLRKADLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I I +++ A E    ++ C     + C     C    +L K      
Sbjct: 61  AGGGYVLARDPQNIAIGEIINALEGDISLSCCDLGKNVACGKQADCATRDILSKLQGKIE 120

Query: 120 DVLTQYSIECL 130
            V+   ++  +
Sbjct: 121 GVMESMTLADM 131


>gi|157147850|ref|YP_001455169.1| transcriptional repressor NsrR [Citrobacter koseri ATCC BAA-895]
 gi|157085055|gb|ABV14733.1| hypothetical protein CKO_03654 [Citrobacter koseri ATCC BAA-895]
          Length = 125

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ E   +S   + KI+  L +AG V  +RG+ GG+RL +PA+ I I D
Sbjct: 3   SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPANVIVIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     +
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|296115761|ref|ZP_06834387.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977738|gb|EFG84490.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 151

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R L Y  +H D    I ++A A  ISE  L K++  L + G ++T+RGR GG+ L R A
Sbjct: 1   MRTLFYVGLHTDRRVSIREVANAYGISENHLVKVIHKLGRGGFIQTMRGRGGGLTLARAA 60

Query: 71  DQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           D+I I DVV+ TEE   +  C  +      C L   C L  +L +A++AF  VL   ++ 
Sbjct: 61  DEIRIGDVVRYTEEDMNLVACEPTTVDGRSCVLARHCRLRGLLGQAIDAFMMVLDGATLG 120

Query: 129 CLVRNRSS--IKKIF 141
            L+ +     +++IF
Sbjct: 121 SLLTDEDCVVLRQIF 135


>gi|326626056|gb|EGE32401.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 117

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ I I DVV+  E 
Sbjct: 2   TSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELE- 60

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
              +  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 61  PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 114


>gi|254421032|ref|ZP_05034756.1| rrf2 family protein (putative transcriptional regulator)
           [Brevundimonas sp. BAL3]
 gi|196187209|gb|EDX82185.1| rrf2 family protein (putative transcriptional regulator)
           [Brevundimonas sp. BAL3]
          Length = 160

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP------NRISQIAEACCISELFLFKILQPLVKAGIV 54
           M L+ +  Y +  +   A +            +++IA    IS  +L ++   L K+ +V
Sbjct: 1   MRLSTKGRYAVMAMADLAKNGRGESGEIRAVSLAEIAARQEISLSYLEQLFARLRKSDLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVG-SCGLTSVLR 112
           ++VRG  GG RL + A +  + ++V A +E      C A      C + G  C    +  
Sbjct: 61  KSVRGPGGGYRLAKGAHETVVAEIVLAVDEPIRATRCVAHGSPKGCMMAGERCITHDLWE 120

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
              +     L   S+E +V NR+  ++
Sbjct: 121 DLGDEIHRYLAGVSLEDVVMNRTGQRR 147


>gi|154502553|ref|ZP_02039613.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
 gi|153796745|gb|EDN79165.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
          Length = 142

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y + + +  A+H   D    ++ IA+   +SE +L +I++ L +AG+V++VR
Sbjct: 1   MKMSTRGQYALEIAVDLALHLMPDRLESLNDIAKRRNLSEKYLERIMKLLKEAGLVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L +   +I++L+V++A E       C   +         C   S   +     
Sbjct: 61  GAYGGYCLTKEPGEISVLEVLRAAEGQLAPVSCLVENTECGMECEICSTKSTWGEMWEQI 120

Query: 119 FDVLTQYSIECLVR 132
            D   + ++  +  
Sbjct: 121 LDTAAEVTVADIAE 134


>gi|52785847|ref|YP_091676.1| hypothetical protein BLi02094 [Bacillus licheniformis ATCC 14580]
 gi|163119474|ref|YP_079257.2| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|52348349|gb|AAU40983.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|145902981|gb|AAU23619.2| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
          Length = 133

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L KAG++E+  G
Sbjct: 1   MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  + I+ LD++ A E +  + +C  +H         C +  V+  A +   
Sbjct: 61  ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNH------GSECVIQKVMVSAEDEME 114

Query: 120 DVLTQYSIECLVRN 133
           + L Q  I  L + 
Sbjct: 115 NYLRQQKISDLAKK 128


>gi|295094610|emb|CBK83701.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
           ART55/1]
          Length = 136

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +RV+   AI++D     + +I +   +S+ +L  I++ L KA ++E   G
Sbjct: 1   MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  ++ T+ ++++ TE       C  +  + C   G C    + +       
Sbjct: 61  HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSAMTCDRSGQCYTLPIWQGLAELIQ 120

Query: 120 DVLTQYSIECLVRN 133
           D     ++  + RN
Sbjct: 121 DYFQGKTLADIARN 134


>gi|212702242|ref|ZP_03310370.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
 gi|212674305|gb|EEB34788.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
          Length = 149

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+  A   D    ++ Q+A+   IS  +L +I++ L   GI+  VRG
Sbjct: 1   MKFSTRTRYGLRFLLRLAAQPDNSLLQLGQVAQEESISPGYLEQIVRALKPLGILRAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P  +I + DV    E       C    K+ C   G C   +   +      
Sbjct: 61  SGGGYALSKPPSEINMEDVFLHLEGEISPVSCLGRGKV-CQREGLCSTRAFWHQLDEHVR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++ +  S
Sbjct: 120 DFLRHQTLQNIIESERS 136


>gi|161621161|ref|YP_001595047.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|163845438|ref|YP_001623093.1| Rrf2 family transcriptional regulator protein [Brucella suis ATCC
           23445]
 gi|161337972|gb|ABX64276.1| rrf2 family protein [Brucella canis ATCC 23365]
 gi|163676161|gb|ABY40271.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
           23445]
          Length = 166

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 85  GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 144

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 145 ANVLDHRTLAD 155


>gi|283458758|ref|YP_003363397.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
 gi|283134812|dbj|BAI65577.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
          Length = 222

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RVLM   A+         +IAE        + K +  LV  G +++ RG
Sbjct: 67  MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 126

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L       T+  +++ATE    + EC       CPL   C L +VL KA  AF+
Sbjct: 127 RSGGVMLSDAGRSATVGTILRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 185

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             +    I  L      +  +F
Sbjct: 186 ASVDSVIISELTAGARPVGPVF 207


>gi|153004144|ref|YP_001378469.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027717|gb|ABS25485.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 158

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ DYG+R ++Y A I  +      +IA    + E FL KIL+ LV   +V + RG 
Sbjct: 6   RISRKIDYGLRAMIYLASIPQESVVPFREIARQMDVPEDFLAKILKTLVDQSLVRSTRGP 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R   +I+ LDV++A E    +  C       C    +C + SV R+      D
Sbjct: 66  HGGYALARTPSEISFLDVIEAVEGPVALNVCLDGEDA-CGHSTACTMVSVWRQGQERMLD 124

Query: 121 VLTQYSIECLV 131
           V  Q  +  L 
Sbjct: 125 VYRQAKLNELA 135


>gi|300723225|ref|YP_003712525.1| hypothetical protein XNC1_2289 [Xenorhabdus nematophila ATCC 19061]
 gi|297629742|emb|CBJ90348.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T   +YGI  L++   + D      ++AE   IS  FL KIL  L KAGIV +  G RG
Sbjct: 4   ITVSVEYGIHCLLWFVDNPDRSLSSRELAELQGISPSFLAKILPRLEKAGIVNSNEGIRG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTSVLR 112
           G RL  PA++IT L ++ A E    + EC            ++  D  +  +C +  V+ 
Sbjct: 64  GYRLALPAEKITFLSIIDAIEGYKPLFECQEVRQRCAIFENTNPPDWAISDTCSVHKVIL 123

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  A  DVL   ++  + 
Sbjct: 124 QAEKAMRDVLANQTLADVA 142


>gi|332975848|gb|EGK12726.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437]
          Length = 210

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
             +K TDY +  L++ A H+++     I +++ +  +SE +L KI+  L + GIV  V G
Sbjct: 52  QFSKSTDYALHALIHLA-HSEHRRNIGIKELSASLGVSESYLSKIMSKLRRDGIVRAVPG 110

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------------FASHKIDCPLVGS 104
             GG  L RPA QIT L+V+   E    + EC                A    DC     
Sbjct: 111 VNGGYELARPAGQITFLEVIHVIEGRQSLFECSTLNSKQHRLLAEERAADRDRDCQGNSE 170

Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           C +  V+  A    +  L +++I+ ++  
Sbjct: 171 CLVKKVMDGAEQHLYQYLREHTIQSVLDE 199


>gi|62317939|ref|YP_223792.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|254691631|ref|ZP_05154885.1| RfF2 family protein [Brucella abortus bv. 6 str. 870]
 gi|254695073|ref|ZP_05156901.1| RfF2 family protein [Brucella abortus bv. 3 str. Tulya]
 gi|254698170|ref|ZP_05159998.1| RfF2 family protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699245|ref|ZP_05161073.1| RfF2 family protein [Brucella suis bv. 5 str. 513]
 gi|254711200|ref|ZP_05173011.1| RfF2 family protein [Brucella pinnipedialis B2/94]
 gi|254711800|ref|ZP_05173611.1| RfF2 family protein [Brucella ceti M644/93/1]
 gi|254714868|ref|ZP_05176679.1| RfF2 family protein [Brucella ceti M13/05/1]
 gi|254731614|ref|ZP_05190192.1| RfF2 family protein [Brucella abortus bv. 4 str. 292]
 gi|256030172|ref|ZP_05443786.1| RfF2 family protein [Brucella pinnipedialis M292/94/1]
 gi|256059824|ref|ZP_05450018.1| RfF2 family protein [Brucella neotomae 5K33]
 gi|256112195|ref|ZP_05453116.1| RfF2 family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256256818|ref|ZP_05462354.1| RfF2 family protein [Brucella abortus bv. 9 str. C68]
 gi|260544123|ref|ZP_05819944.1| RRF2 family protein [Brucella abortus NCTC 8038]
 gi|260564084|ref|ZP_05834569.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260759374|ref|ZP_05871722.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762617|ref|ZP_05874949.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|261215425|ref|ZP_05929706.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261216557|ref|ZP_05930838.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261313970|ref|ZP_05953167.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261318791|ref|ZP_05957988.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261319428|ref|ZP_05958625.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261323803|ref|ZP_05963000.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261749683|ref|ZP_05993392.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|265987202|ref|ZP_06099759.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265993622|ref|ZP_06106179.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|62198132|gb|AAX76431.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
 gi|260097394|gb|EEW81268.1| RRF2 family protein [Brucella abortus NCTC 8038]
 gi|260151727|gb|EEW86820.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260669692|gb|EEX56632.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673038|gb|EEX59859.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260917032|gb|EEX83893.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260921646|gb|EEX88214.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292118|gb|EEX95614.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298014|gb|EEY01511.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299783|gb|EEY03280.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302996|gb|EEY06493.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261739436|gb|EEY27362.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262764492|gb|EEZ10524.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|264659399|gb|EEZ29660.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|326411283|gb|ADZ68347.1| RRF2 family protein [Brucella melitensis M28]
 gi|326554572|gb|ADZ89211.1| RRF2 family protein [Brucella melitensis M5-90]
          Length = 143

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 62  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 122 ANVLDHRTLAD 132


>gi|257414160|ref|ZP_04745427.2| iron-sulfur cluster assembly transcription factor IscR [Roseburia
           intestinalis L1-82]
 gi|257201011|gb|EEU99295.1| iron-sulfur cluster assembly transcription factor IscR [Roseburia
           intestinalis L1-82]
          Length = 130

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 14  LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A++N   P  +  IA    IS+ +L +I+  L KA  V+++RG +GG  L +  ++
Sbjct: 1   MLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRGAQGGYILTKRPEE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
            T+  +++ TE S     C       C  +  C    V +K   A   V+   ++  LV 
Sbjct: 61  YTVGMILRLTEGSLAPVACVEDEDT-CDKMNDCATVLVWKKMNEAINQVVDSITLADLVD 119


>gi|197121676|ref|YP_002133627.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Anaeromyxobacter sp. K]
 gi|196171525|gb|ACG72498.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           K]
          Length = 160

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG 
Sbjct: 6   RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R    I+ LDV+++ E    +  C       C    +C + SV R       D
Sbjct: 66  HGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124

Query: 121 VLTQYSIECLV 131
           V  Q  +  L 
Sbjct: 125 VYRQAKLSELA 135


>gi|254720792|ref|ZP_05182603.1| RfF2 family protein [Brucella sp. 83/13]
 gi|265985850|ref|ZP_06098585.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306845400|ref|ZP_07477974.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
 gi|264664442|gb|EEZ34703.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306274143|gb|EFM55959.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
          Length = 143

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA++I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 62  GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 122 ANVLDHRTLAD 132


>gi|83594728|ref|YP_428480.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577642|gb|ABC24193.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 160

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++++  YG R L   A       RI  IAE   I   FL +IL  L   G+V + RG+ G
Sbjct: 2   ISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHHGLVVSFRGKNG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L R    I+  +V++  +       C +        DC    +C +  V   A +  
Sbjct: 62  GYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACEDCEGETACRMRLVFGAAYDRM 121

Query: 119 FDVLTQYSIECLVRNR 134
            +VL   S+   +  R
Sbjct: 122 LEVLETTSLGDAMNGR 137


>gi|114566820|ref|YP_753974.1| rrf2 family protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337755|gb|ABI68603.1| transcriptional regulator, BadM/Rrf2 family [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 137

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++T+Y I++L+  A            IAE   I  +FL K +Q L +AG+V T RG
Sbjct: 1   MQITRQTEYAIKILIELAKSPFGELIPSKLIAEQQDIPGMFLQKTVQLLSRAGLVSTQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GGVRL   AD+ITI +V+ A E    +  C +     CP +  C +  +L +A  A  
Sbjct: 61  IQGGVRLTVSADKITIANVITAIEGPLALNLCLSPG-YSCPNMTDCQVRHILGRAQAALL 119

Query: 120 DVLTQYSIECLVRNR 134
             L Q SI  +V  +
Sbjct: 120 HELQQESIADIVEGK 134


>gi|126651583|ref|ZP_01723786.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
 gi|126591532|gb|EAZ85638.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
          Length = 166

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   +  +    I  ++E   +SE +L K+L  L KAGIV +V G
Sbjct: 1   MKYSVMVEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDCPL----VGSCGLTS 109
            +GG +L +  + I+  DVVKA E    +  C      FA+   +C        +C +  
Sbjct: 61  VKGGYKLSKKPEDISFWDVVKAVEGESPIFHCKNIKANFANQTENCDSCASGTSNCTINI 120

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +A     + L   +I  L
Sbjct: 121 VMLEAEEQMRNYLRGKTIAWL 141


>gi|168186835|ref|ZP_02621470.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum C str. Eklund]
 gi|169295240|gb|EDS77373.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
           botulinum C str. Eklund]
          Length = 131

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  AI+  + P  I  IA+   ISEL+L ++  PL KA +++++RG +GG  L +    
Sbjct: 1   MVDLAINYGETPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRGAQGGYVLNKDPKD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++ D++   E    ++ C  + +  C  +  C    + +K   +  +V    +++ +  
Sbjct: 61  ISVSDIINVLEGPIEISSCVDTGE--CDNMDICPTRLLWKKIKKSIDEVTESVTLQDMAN 118

Query: 133 NRSSIK 138
           +   +K
Sbjct: 119 DYKKLK 124


>gi|307941725|ref|ZP_07657080.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
 gi|307775333|gb|EFO34539.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
          Length = 138

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L++ +D+ +R+L+Y       P  + ++     +S+  L K++  L +  +VET RGR
Sbjct: 1   MRLSQASDFALRILIYLG-QTREPQTVDKLTSRLRLSKSHLMKLVAQLARLDLVETTRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L    + I I DVV++ E    V  C      +C  +  C L   +  A +AF D
Sbjct: 60  GGGILLKANPETIRIGDVVRSFETDLGVVACLKQEPTECVFLPRCALKQTMAGAADAFLD 119

Query: 121 VLTQYSIECLV 131
            L Q ++  ++
Sbjct: 120 YLNQKTLADML 130


>gi|258619946|ref|ZP_05714986.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
 gi|258627177|ref|ZP_05721965.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
 gi|262165059|ref|ZP_06032796.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
 gi|262172182|ref|ZP_06039860.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
 gi|258580479|gb|EEW05440.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
 gi|258587679|gb|EEW12388.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
 gi|261893258|gb|EEY39244.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
 gi|262024775|gb|EEY43443.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
          Length = 160

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118

Query: 133 NRSSIK 138
           +   I+
Sbjct: 119 DNEVIE 124


>gi|319645572|ref|ZP_07999804.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
 gi|317392458|gb|EFV73253.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
          Length = 141

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L KAG++E+  G
Sbjct: 9   MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R  + I+ LD++ A E +  + +C  +H         C +  V+  A +   
Sbjct: 69  ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNH------GSECVIQKVMVSAEDEME 122

Query: 120 DVLTQYSIECLVRN 133
           + L Q  I  L + 
Sbjct: 123 NYLRQQKISDLAKK 136


>gi|50084582|ref|YP_046092.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter sp. ADP1]
 gi|49530558|emb|CAG68270.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter sp. ADP1]
          Length = 147

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG  GG  L R 
Sbjct: 1   MTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARH 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A +IT+L++++A  E+     C   HK +C     C    + ++  +   D L + ++  
Sbjct: 61  ATEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLAD 118

Query: 130 LVRN 133
           L+  
Sbjct: 119 LIAR 122


>gi|260776733|ref|ZP_05885628.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607956|gb|EEX34221.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 155

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I  V+ A +ES    +C  + + DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  IAIGTVIAAVDESVDATKC--NGRADCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|303246358|ref|ZP_07332638.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
 gi|302492421|gb|EFL52293.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           fructosovorans JJ]
          Length = 152

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y IR ++Y A+H D       +IAEA  I   FL K+ Q L +AGI+   +G
Sbjct: 1   MRLTRAGEYAIRCVLYLAMHQDRTLISRKEIAEAMEIPAQFLGKVAQSLSRAGIIAIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  + +++L VV+A +   F+ +C       C     C +  V   A     
Sbjct: 61  AQGGYEMAKAPEAVSLLSVVEAIDGEIFLNDCIHRPDT-CTRQTICSVHRVWETARRQLR 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   ++  L R    
Sbjct: 120 ETLAGTTLAALAREEEQ 136


>gi|167629120|ref|YP_001679619.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591860|gb|ABZ83608.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 147

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T++ +Y I  L+  A+     + +   IA+   I   FL +I+  L + G V++ RG
Sbjct: 1   MEITRKAEYAIAALLDLALLPPGESTLSKDIAKRQAIPSNFLPQIMAALSRHGWVDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL   A+ IT+  V++  E    +  C       CP    C L  V  +A +A  
Sbjct: 61  AGGGVRLAVEAETITLQAVIEVIEGPIAINRCLVGGG-SCPNQAGCPLHHVWARAQSAML 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           DVL + +I  LV  + +I
Sbjct: 120 DVLAKTTIADLVTAKRAI 137


>gi|261212153|ref|ZP_05926439.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
 gi|260838761|gb|EEX65412.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
          Length = 160

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118

Query: 133 NRSSIK 138
           +   I+
Sbjct: 119 DNEVIE 124


>gi|300816522|ref|ZP_07096743.1| Rrf2 family protein [Escherichia coli MS 107-1]
 gi|300906007|ref|ZP_07123731.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300929285|ref|ZP_07144761.1| Rrf2 family protein [Escherichia coli MS 187-1]
 gi|301302595|ref|ZP_07208725.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|301325941|ref|ZP_07219362.1| Rrf2 family protein [Escherichia coli MS 78-1]
 gi|300402174|gb|EFJ85712.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300462778|gb|EFK26271.1| Rrf2 family protein [Escherichia coli MS 187-1]
 gi|300530752|gb|EFK51814.1| Rrf2 family protein [Escherichia coli MS 107-1]
 gi|300842120|gb|EFK69880.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|300847294|gb|EFK75054.1| Rrf2 family protein [Escherichia coli MS 78-1]
 gi|315255522|gb|EFU35490.1| Rrf2 family protein [Escherichia coli MS 85-1]
 gi|324019356|gb|EGB88575.1| Rrf2 family protein [Escherichia coli MS 117-3]
          Length = 125

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL + A  I I D
Sbjct: 3   SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     +
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|94496618|ref|ZP_01303194.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
 gi|94423978|gb|EAT09003.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
          Length = 136

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + ++   A H        + +A    I      K++  L  AG++E+ RG
Sbjct: 1   MRLSSFADYAVVLMSAAARHCGGARMNATTLAAETGIPLPTAQKLVSRLSGAGLLESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL RP   IT+ DVV+A E    +  C      DC L   C +   +  A NA  
Sbjct: 61  TGGGVRLSRPPATITLADVVEAVEGPIAMTACAEMGAHDCNLERDCRIRPHMNVANNAIR 120

Query: 120 DVLTQYSIECLVRN 133
             L   +I  L R 
Sbjct: 121 QALAGVTIASLTRE 134


>gi|254491678|ref|ZP_05104857.1| FeS assembly SUF system regulator [Methylophaga thiooxidans DMS010]
 gi|224463156|gb|EEF79426.1| FeS assembly SUF system regulator [Methylophaga thiooxydans DMS010]
          Length = 163

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + K TDYGI ++ Y A + D  +    IAEA  +    + K+L+ L   G++++ RG  
Sbjct: 3   RMGKLTDYGIVLMSYLAANRDVQHSAHTIAEAVKVPLPTVRKVLKSLSHGGLLKSERGVM 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L    D+I++ +++ A E    + EC +     C     C + +   +  NA F  
Sbjct: 63  GGYSLNNSPDKISVAEIITAIEGPIALTECVSDES-HCEQETHCAVQTNWTRINNAVFHA 121

Query: 122 LTQYSIECLVRNRSS 136
           L +  +  ++  ++ 
Sbjct: 122 LDEVKLADMLAPQNE 136


>gi|282855787|ref|ZP_06265093.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
 gi|282586419|gb|EFB91681.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
          Length = 142

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +RVL+  A H       +  IAE   ISE +L  IL+ LV+  ++  +RG
Sbjct: 1   MLVSTKGRYALRVLIDLAEHQSGDYVPLRAIAERQQISEKYLEAILKSLVRDKVLAGMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L    + +T+  +++ TE S     C A     C   G C    + R+  +   
Sbjct: 61  KGGGYKLAVAPEALTVGRILRLTEPSLATVSCLAGRGEKCGRRGECRTLPMWRELDSMIL 120

Query: 120 DVLTQYSIECLVRN 133
             L    +  L++ 
Sbjct: 121 AYLDGRKLADLIKK 134


>gi|251796973|ref|YP_003011704.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247544599|gb|ACT01618.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 127

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  + +  A   D P  + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R     + I+ LDV++A E +  + EC  S   +      C +  V+  A +A  
Sbjct: 61  ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPE------CRIHRVMLSAEDAMD 114

Query: 120 DVLTQYSIECLVR 132
             L    +  L++
Sbjct: 115 QHLRNTKLVDLMK 127


>gi|220916472|ref|YP_002491776.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954326|gb|ACL64710.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 159

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG 
Sbjct: 6   RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R    I+ LDV+++ E    +  C       C    +C + SV R       D
Sbjct: 66  HGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124

Query: 121 VLTQYSIECLV 131
           V  Q  +  L 
Sbjct: 125 VYRQAKLSELA 135


>gi|269127506|ref|YP_003300876.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
           DSM 43183]
 gi|268312464|gb|ACY98838.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
           curvata DSM 43183]
          Length = 154

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A+    P    Q+AE+  I   FL  IL  L ++G+V + RG 
Sbjct: 1   MRLSARVDYALRAAAELAVAGSTPVTAVQLAESQQIPPKFLENILGQLRRSGLVRSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +PAD+I++ D+++A +             +         L  V      +   
Sbjct: 61  DGGYWLAKPADEISLADIIRAIDGPLLGVRGERPEHVGYQGAAR-PLQEVWIALRASERS 119

Query: 121 VLTQYSIECLVRNR 134
           +L   ++  +   +
Sbjct: 120 ILESVTLAHIAAGK 133


>gi|196233877|ref|ZP_03132715.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
 gi|196222071|gb|EDY16603.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
           Ellin428]
          Length = 153

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 76/143 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +DY +R+L+Y   H+       ++A+A  IS   L K+ + L KAG +   RG 
Sbjct: 1   MQLTTHSDYALRLLIYLTSHSTRKVSTREVADAYGISLNHLTKVAKSLTKAGWLLAARGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     +  + ++V+ TE +  VAECF +    CP+   C L  +L +A  AFFD
Sbjct: 61  GGGLTLAPHTREARVGEIVRYTEYTCDVAECFDAKANTCPITSVCRLKPLLYRAQKAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           VL   +IE + RN   +  IF +
Sbjct: 121 VLDTATIEDIARNPGELNAIFES 143


>gi|318059253|ref|ZP_07977976.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           sp. SA3_actG]
 gi|318075281|ref|ZP_07982613.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           sp. SA3_actF]
          Length = 151

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A   +  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   +++
Sbjct: 120 LLGEVSLASLAREAPTMR 137


>gi|126732149|ref|ZP_01747951.1| CDG1D protein [Sagittula stellata E-37]
 gi|126707438|gb|EBA06502.1| CDG1D protein [Sagittula stellata E-37]
          Length = 150

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH +K TDY +RV +Y   H+     IS+IA A  +S+  L K++  LV+   +++ RGR
Sbjct: 1   MHFSKFTDYALRVCLYLGAHDGRVVPISEIARAHSLSQNNLMKVVNMLVEGNFLKSTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV+L R  D+I + DV +  E    + +C +     C L GSCGLT  L +A   F+ 
Sbjct: 61  AGGVQLARSPDRILVGDVARFMEGDAQMVDCSS-----CILRGSCGLTGALAEAKILFYQ 115

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L + SI   + +      I 
Sbjct: 116 TLNRNSIADAIASHPRTLPIL 136


>gi|84387613|ref|ZP_00990630.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
 gi|84377458|gb|EAP94324.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
          Length = 160

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES    +C      DC     C   ++ R   +     L   ++  L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLQ 124


>gi|229523430|ref|ZP_04412837.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
 gi|229339793|gb|EEO04808.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
          Length = 160

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|156740844|ref|YP_001430973.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232172|gb|ABU56955.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus
           castenholzii DSM 13941]
          Length = 146

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R L+  A    + P +   I     I E +L +IL  L +AG++E++RG
Sbjct: 1   MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRAGLIESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL RP  QIT+LD + A E      +           +    +  V   A     
Sbjct: 61  PQGGHRLARPPSQITVLDALTALEGPLLALDSGRDALTPTEPMDRDLVREVWDGAREILE 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++E L + ++ 
Sbjct: 121 RYLASVTLEDLCQRKAQ 137


>gi|29832495|ref|NP_827129.1| hypothetical protein SAV_5952 [Streptomyces avermitilis MA-4680]
 gi|29609614|dbj|BAC73664.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 166

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++A    +      K++  L   G++   RGR
Sbjct: 9   MRLLRSTDLALRVLMRLAVTGDSSPTTREVAADMDVPYTHAAKVVAELQHLGLITARRGR 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+A E    V +C       CPL  +C L   LR+A  AFF 
Sbjct: 69  GGGLALMEAGRTASVGAVVRAFEGDGDVVDC--EGSTPCPLNSACRLRGALRRAQEAFFA 126

Query: 121 VLTQYSIECLVRNRSS 136
            L   +++ +V   + 
Sbjct: 127 SLDPLTVQDMVAAPTG 142


>gi|237728822|ref|ZP_04559303.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909444|gb|EEH95362.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 167

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM             + +IAE   +   +L KI   L KAG+V ++ G+ 
Sbjct: 5   SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L +PA+ IT+LDVV A +    + EC         F  H  +    G CG+ SV+ 
Sbjct: 65  GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFEEHPPEWACEGICGVRSVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L Q++I  L R 
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145


>gi|256545144|ref|ZP_05472510.1| iron-sulfur cluster assembly transcription factor IscR
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399185|gb|EEU12796.1| iron-sulfur cluster assembly transcription factor IscR
           [Anaerococcus vaginalis ATCC 51170]
          Length = 134

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A + D     +S I+ A  + E +L ++++ L +  +V + RG
Sbjct: 1   MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNALKLPENYLEQLIRILKRNNLVISARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R + +IT+ DV++  E     +EC A  + +C     C    V  K  +A  
Sbjct: 61  AKGGYKLSRNSSEITVGDVLRVLEGEMTSSECVAD-RNNC-NNSECEAYYVFAKIDDAIN 118

Query: 120 DVLTQYSIECLVRNR 134
             +   +I+ +V  +
Sbjct: 119 KAVNSITIKDMVNEK 133


>gi|229505639|ref|ZP_04395149.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
 gi|229510689|ref|ZP_04400168.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
 gi|229513114|ref|ZP_04402580.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
 gi|229517811|ref|ZP_04407255.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
 gi|229525393|ref|ZP_04414798.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
           VL426]
 gi|229530123|ref|ZP_04419513.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
 gi|229608657|ref|YP_002879305.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
 gi|229333897|gb|EEN99383.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
 gi|229338974|gb|EEO03991.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
           VL426]
 gi|229344526|gb|EEO09500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
 gi|229350007|gb|EEO14961.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
 gi|229350654|gb|EEO15595.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
 gi|229357862|gb|EEO22779.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
 gi|229371312|gb|ACQ61735.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
          Length = 160

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   +  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+I  V+ A +ES    +C  + K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|220922635|ref|YP_002497937.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219947242|gb|ACL57634.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 150

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ L++ A +       ++++A A  I + FL  IL  L  AGIV + +G  
Sbjct: 2   LTNKGKYGLKALVHLAGLPPGARIGVAEVAAANNIPKKFLDAILGELRNAGIVHSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP ++I +   ++  +       C +        DC    +C +  V+ +  N+
Sbjct: 62  GGYALARPPEEIRVGHAIRVLDGPLAPIPCASRTGYRPCEDCADEAACAVRLVMLEVRNS 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   ++  + R+R +
Sbjct: 122 IAGVLDTLTLAQM-RDRPA 139


>gi|254702363|ref|ZP_05164191.1| Rrf2 family transcriptional regulator protein [Brucella suis bv. 3
           str. 686]
 gi|260568733|ref|ZP_05839202.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261752927|ref|ZP_05996636.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|54112367|gb|AAN34279.2| RrF2 family protein [Brucella suis 1330]
 gi|260155398|gb|EEW90479.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
 gi|261742680|gb|EEY30606.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 143

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 62  GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 122 ANVLDHRTLAD 132


>gi|291085972|ref|ZP_06571283.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
 gi|291069042|gb|EFE07151.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
          Length = 117

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             IS++ E   +S   + KI+  L +AG V  +RG+ GG+RL +PA  I I DVV+  E 
Sbjct: 2   TSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPAKAIGIGDVVRELE- 60

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
              +  C +     C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 61  PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 114


>gi|330990683|ref|ZP_08314639.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329762123|gb|EGG78611.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 135

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT RTD   RVL++ A H        +S I+E   +S   L K+++ L   GI+   R
Sbjct: 1   MRLTLRTDLAFRVLIHLARHARAQDRVTVSHISERHNLSHNHLVKVVKELCHHGILVGTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           GR GG+RL R    I I  +V+  E E   +  C   +   C L  SC L  ++R+A +A
Sbjct: 61  GRNGGIRLARHPKDINIGHIVRLMETEGEVMTGCAPLYGRPCVLADSCRLRHLIRQATDA 120

Query: 118 FFDVLTQYSIECLV 131
           F  +L   S++ L+
Sbjct: 121 FMVILDGMSVQDLL 134


>gi|90406923|ref|ZP_01215114.1| Rrf2 family protein [Psychromonas sp. CNPT3]
 gi|90311965|gb|EAS40059.1| Rrf2 family protein [Psychromonas sp. CNPT3]
          Length = 158

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+   + P  ++ I+    IS  +L ++   L K  +V +VRG
Sbjct: 1   MKLTSKGRYAVTAMLDVALKEHNGPVPLADISMRQGISLSYLEQLFSKLRKNELVCSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
             GG +L +   +I++  ++ A  ES  V +C  S K  C   G  C   S+  +     
Sbjct: 61  PGGGYKLGKLRSEISVAMIIAAVNESVDVRKC--SGKEGCQEHGVKCLTHSLWEQLSLRI 118

Query: 119 FDVLTQYSIECLVRNRS 135
              L   ++E L+ +  
Sbjct: 119 STFLDGITLEELMSSEH 135


>gi|323136514|ref|ZP_08071596.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
 gi|322398588|gb|EFY01108.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
          Length = 157

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A +       ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKAKYGLKAMVHLAGVEPGQTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +I++ ++V+A +      +C +        DC     C +  V+ +A +A
Sbjct: 62  GGYMLARLPSEISVGNLVRALDGPLAPIQCASKTIYRRCDDCVDEKHCSVRLVMMEARDA 121

Query: 118 FFDVLTQYSIE 128
              VL   S+E
Sbjct: 122 IAKVLDNTSLE 132


>gi|254293805|ref|YP_003059828.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hirschia baltica ATCC 49814]
 gi|254042336|gb|ACT59131.1| transcriptional regulator, BadM/Rrf2 family [Hirschia baltica ATCC
           49814]
          Length = 147

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  R  Y +  L+  A ++ D P  +S IAE   IS  +L ++   L KA IV++VRG
Sbjct: 1   MKLGSRGRYAVMALVDLASNDMDGPVSLSDIAERQKISLSYLEQLFAKLRKANIVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
             GG  L   A +  +  ++ A +E      C       C   +  C    + R+     
Sbjct: 61  PGGGYLLLNDASKTMVSQIIVAVDEPIQTTRCGEMGGKPCTGRLERCATHDLWRELRLHI 120

Query: 119 FDVLTQYSIECLVRNR 134
              L+  SI  ++   
Sbjct: 121 IQFLSGVSISDVLSGN 136


>gi|118602585|ref|YP_903800.1| BadM/Rrf2 family transcriptional regulator [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567524|gb|ABL02329.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 139

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A ++   P  +  I++   IS  +L ++   L +A +V++VRG
Sbjct: 1   MQLTTKGRYAVIAMLDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L      I +  +++A +E+  +  C       C     C    +  +      
Sbjct: 61  PGGGYLLDAKVSDINLTQIIEAVDENIDLRRCKGIKG--CNNGRQCISHQLWCEVSQQIR 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   +++ ++ + SS K +
Sbjct: 119 TFLNGKTLQMVIDDHSSNKGV 139


>gi|309789575|ref|ZP_07684156.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308228311|gb|EFO81958.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 146

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DYG+R L   A    + P +  +IA    I   +L ++L  + +AG++E++RG
Sbjct: 1   MRISSKGDYGLRALFDLAQRYGEGPVQSEEIAIRQGIPVNYLNQLLITMRRAGLIESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+ D +   E     AE      +         + +V         
Sbjct: 61  PQGGHMLARSPETITLRDAIIVLEGPLLPAEASREDLVPTEPDDDTLIDAVWDDLRGQIE 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
            +L Q +++ L + +   +
Sbjct: 121 QILAQITLDDLCQRKRQQR 139


>gi|210631991|ref|ZP_03297156.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
 gi|210159793|gb|EEA90764.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
          Length = 176

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L   A   D    +   AE+  +   F   I   LV+AGI+E++RG 
Sbjct: 16  MDISRKTDYALRMLSMLAEGEDCLLSVRTAAESVDVPYSFARSIQHGLVQAGIIESLRGV 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL      +TI  +V+A +    + +C A +   CP +  C    +   A      
Sbjct: 76  RGGMRLKVDPKDVTIRQIVEAVQGPLVMNDCTAENGA-CPRMDGCCYHPLWVGAQELLRS 134

Query: 121 VLTQYSIECLVRNRS 135
            L   +++ +V NR 
Sbjct: 135 YLDSITLDDIVNNRR 149


>gi|163814492|ref|ZP_02205881.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
 gi|158450127|gb|EDP27122.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
          Length = 136

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +RV+   AI++D     + +I +   +S+ +L  I++ L KA ++E   G
Sbjct: 1   MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  ++ T+ ++++ TE       C  +  I C     C    + +       
Sbjct: 61  HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSTITCDRSKQCYTLPIWQGLAELIQ 120

Query: 120 DVLTQYSIECLVRN 133
           +     ++  + RN
Sbjct: 121 EYFQGKTLADIARN 134


>gi|157738497|ref|YP_001491181.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           RM4018]
 gi|315635366|ref|ZP_07890633.1| transcriptional regulator superfamily protein [Arcobacter butzleri
           JV22]
 gi|157700351|gb|ABV68511.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
           RM4018]
 gi|315480351|gb|EFU71017.1| transcriptional regulator superfamily protein [Arcobacter butzleri
           JV22]
          Length = 152

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++K+TDY +R L   A   D    I +++E+  +   FL  I+  + +AG V+++ GR
Sbjct: 1   MKVSKKTDYALRALFAIA-EADNLISIRELSESVDVPRRFLENIMLEMNRAGWVKSIPGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L + +D+IT+ +V++  E    +  C + S+   C   G C    V     N   
Sbjct: 60  YGGYVLAKGSDEITLGEVIRYFEGMIAMISCVSVSNYEPCSQEGKCYFRRVFLNIRNLTA 119

Query: 120 DVLTQYSIE 128
            +L + +I 
Sbjct: 120 QILDKTTIA 128


>gi|15896762|ref|NP_350111.1| hypothetical protein CA_C3525 [Clostridium acetobutylicum ATCC 824]
 gi|15026619|gb|AAK81451.1|AE007849_5 Uncharacterized conserved protein, YjeB/RRF2 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325510933|gb|ADZ22569.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 168

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 19/145 (13%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y           I  +A    ISE +L K+   L K+GI++++ G
Sbjct: 1   MKFSVGVEYALHCLLYMVNAEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105
            +GG  L R A++IT  DVV+A E S    +C                     CP    C
Sbjct: 61  VKGGYALARSAEEITFWDVVEALEGSESFFQCAEIRQNNILLDKNNLPDTHTKCP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130
            +  V+ +A +     L   ++  L
Sbjct: 117 LIKVVMVEAEDEMRKYLRNKTLAWL 141


>gi|296116952|ref|ZP_06835554.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976518|gb|EFG83294.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 159

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y  IH D    I +IA+A  ISE  L KI+  L + G VET+RGR
Sbjct: 10  MRLTLHTDYALRTLIYLGIHTDRLTSIHEIAQAYGISENHLIKIIHRLGRGGFVETLRGR 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
           RGG+RL RPA  I I DVV+ TEE   +  C  +       C LVG C L  +L +AL +
Sbjct: 70  RGGLRLGRPAHDILIGDVVRYTEEDLGLVSCMQAPAEGVRPCLLVGGCSLRGILNEALGS 129

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
           F  VL  Y++E  +      +++ +A
Sbjct: 130 FMSVLDSYTLEQAITAHE--RRLLDA 153


>gi|297559632|ref|YP_003678606.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844080|gb|ADH66100.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 154

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A+ ++ P    Q+A A  I   FL  IL  L +AG+V + RG 
Sbjct: 1   MRLSARVDYALRAAAELAVADEGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA +I++ D+++A +             +D        L  V      +   
Sbjct: 61  VGGYWLARPAGEISLADIIRAVDGPLANVRGERPEHVDYDGAAR-SLQQVWIALRASERA 119

Query: 121 VLTQYSIECLVRNR 134
           +L   +++ LV N 
Sbjct: 120 ILEGVNLQHLVTNE 133


>gi|330830081|ref|YP_004393033.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           veronii B565]
 gi|328805217|gb|AEB50416.1| Iron-sulfur cluster assembly transcription factor IscR [Aeromonas
           veronii B565]
          Length = 154

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H +  P  ++ I+E   IS  +L ++   L K G+V +VRG  GG RL     +
Sbjct: 1   MLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRGPGGGYRLGLAPGE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++  V+ A +ES    +C    K  C     C   S+ R         L   ++  LVR
Sbjct: 61  ISVGQVITAVDESVDATKCLG--KGGCHGGTQCLTHSLWRDLSERISSFLGDITLAELVR 118

Query: 133 NRSSIKKIFN 142
            ++ +++I  
Sbjct: 119 -QADVRRIAG 127


>gi|197334970|ref|YP_002155373.1| Rrf2 family protein [Vibrio fischeri MJ11]
 gi|197316460|gb|ACH65907.1| Rrf2 family protein [Vibrio fischeri MJ11]
          Length = 155

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H  + P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A+Q
Sbjct: 1   MLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRGPGGGYRLGLKAEQ 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES    +C    K  C     C   ++ R   +     L   ++  L++
Sbjct: 61  IAVGMVISAVDESVDATKCHG--KEGCQGGTRCLTHTLWRDLSSRISTFLDGITLGELMQ 118

Query: 133 NRS 135
           +  
Sbjct: 119 DNE 121


>gi|86145582|ref|ZP_01063912.1| Predicted transcriptional regulator [Vibrio sp. MED222]
 gi|85836553|gb|EAQ54679.1| Predicted transcriptional regulator [Vibrio sp. MED222]
          Length = 160

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES    +C      DC     C   ++ R   +     L   ++  L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|239931665|ref|ZP_04688618.1| hypothetical protein SghaA1_25822 [Streptomyces ghanaensis ATCC
           14672]
 gi|291440032|ref|ZP_06579422.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342927|gb|EFE69883.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 151

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+          +A A  +      K++  L   G++   RGR
Sbjct: 1   MRLLRSTDLALRVLMRLAVAGGSQPTTRDVAAAMDVPYTHAAKVVADLRHRGLLTARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L       ++  +V+A E    V +C   S    CPL   C L   LR+A  AFF
Sbjct: 61  GGGLTLTEKGRGASVGALVRAFEGEGDVVDCEGGSATAPCPLRSDCRLRGALRRAQEAFF 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  L  + + 
Sbjct: 121 ASLDPITVADLAADPTG 137


>gi|163848758|ref|YP_001636802.1| rrf2 family transcriptional regulator [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526707|ref|YP_002571178.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus sp.
           Y-400-fl]
 gi|163670047|gb|ABY36413.1| transcriptional regulator, Rrf2 family [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450586|gb|ACM54852.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus sp.
           Y-400-fl]
          Length = 146

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DYG+R L   A    + P +   IA    I   +L ++L  L +AG+VE++RG
Sbjct: 1   MRISSKGDYGLRALFDLAQRYGEGPIQSEAIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+L+V+   E     AE                +  +  +      
Sbjct: 61  PQGGHLLARSPESITLLEVLTVLEGPILPAEGGRDDLQPTEPSDRAVIDEIWSELRTTIE 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +++ L + + S
Sbjct: 121 RRLAAITLDDLCQRKRS 137


>gi|87198175|ref|YP_495432.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133856|gb|ABD24598.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 167

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD G+R+L+  A        +   +    +S   + K+ Q LV  G   + RGR
Sbjct: 19  MQLTQHTDLGLRLLIVLA-RKGAAVSLPAFSAEQGLSYHHVAKVAQALVHEGFATSQRGR 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L R A  I + DVV+A E    +A+C       C L   CGL+ VL +AL AF  
Sbjct: 78  SGGIALAREATNIRVGDVVRALERGMRLADCGG-----CALRADCGLSGVLAEALEAFMA 132

Query: 121 VLTQYSIECLVRN 133
           VL +Y++  + R 
Sbjct: 133 VLDRYTLADVSRE 145


>gi|159899482|ref|YP_001545729.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892521|gb|ABX05601.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 142

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ + +YG+R L   A H  +   +  +IAE   ISE +L ++L  L KAG++ +VRG
Sbjct: 1   MRLSTKGEYGVRALFDLAQHYGEGLVQSHEIAERQAISENYLNQLLIALRKAGLITSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RP   I++LD +   E                    +  L  V  +      
Sbjct: 61  PQGGHQLARPPQAISLLDAILVLEGPLLPT----PEGASLDTFDAGLLGEVWGELRAVIE 116

Query: 120 DVLTQYSIECLVRNRSS 136
             L++ +I  L + +  
Sbjct: 117 GHLSEMTIADLCQRKHQ 133


>gi|332291390|ref|YP_004429999.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169476|gb|AEE18731.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 141

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+++T YGI+ L Y A     D   +I  IAE+  IS+ FL  I+  L KAG V + +G+
Sbjct: 2   LSRKTKYGIKALTYIAREQREDALVQIGTIAESENISQKFLESIMLTLKKAGFVSSRKGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG +L R    I +++V++  E    +  C +        DC    +C + S++ +  +
Sbjct: 62  GGGYQLRREPKDIKMVEVMRVLEGPVAMLPCVSLNYYERCADCKDEDACAVHSLMIQIRD 121

Query: 117 AFFDVLTQYSIECLVRNRSS 136
               VL + ++  LV   SS
Sbjct: 122 NTLLVLEKNTLADLVAAASS 141


>gi|258516089|ref|YP_003192311.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779794|gb|ACV63688.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 143

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + + TDY  R + Y ++           IAE   I   FL KI   L+KAGIVE+ RG
Sbjct: 1   MKINQATDYAFRAVFYLSLLPRGQVVEAKLIAEDENIPTRFLLKIFPQLIKAGIVESQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            RGG  L +   +IT+ DV++A E    V  C  +    +      C +   L       
Sbjct: 61  NRGGYSLAKKPAEITLKDVLEAVEGPVMVNRCLLSPEGCNKNHTAICPIHQALLNIQQTM 120

Query: 119 FDVLTQYSIECLVRN-RSSIKKI 140
              L +Y  E L  N +  + K+
Sbjct: 121 NTELEKYDFETLKNNYKQHLSKL 143


>gi|253996434|ref|YP_003048498.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
           JLW8]
 gi|253983113|gb|ACT47971.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
           JLW8]
          Length = 146

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +TK TD  +RVLMY      D    I++IA+   +    L K++  L K   V   RG
Sbjct: 1   MQITKFTDLSLRVLMYLTQEVGDSMVTINEIAQQFDVPRNHLIKVVARLNKLKWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL     ++ + +V++  E    +  C    +  C L G C L  +L   L +F+
Sbjct: 61  RSGGLRLGIQPSELKLGNVLRELENKTSLINCS---EPPCVLSGQCNLKEILDHGLQSFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + + +Y+++ +V  ++ 
Sbjct: 118 EEMNKYTLQSIVDQKTQ 134


>gi|262395130|ref|YP_003286984.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
 gi|262338724|gb|ACY52519.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
          Length = 158

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   
Sbjct: 1   MTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAE 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A  I I  V+ A +ES    +C    K DC     C   ++ R   +   D L   ++  
Sbjct: 61  AHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGE 118

Query: 130 LVRNRSSIK 138
           L+ +   ++
Sbjct: 119 LMTDNEVLE 127


>gi|330990437|ref|ZP_08314396.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
          SXCC-1]
 gi|329762474|gb|EGG78959.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
          SXCC-1]
          Length = 207

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 58/94 (61%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY +R L+Y  +H D    I ++AEA  ISE  L K++  L + G V+T+RGR
Sbjct: 1  MRLTLYTDYALRTLLYLGVHADRRVSIREVAEAYGISENHLVKVIHHLGRGGFVDTLRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
           GG+ L RPADQI + DVV+ TEE   +  C + 
Sbjct: 61 GGGLMLARPADQINVGDVVRHTEEDMALVGCMSP 94



 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           +    +C L  +C L  VL +AL AF  VL   ++  L+      +K+  
Sbjct: 153 SGSAGECLLANACHLRGVLGEALGAFMTVLDARTLADLLTPYE--RKVLT 200


>gi|327539861|gb|EGF26464.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 141

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A   +    ++ +A    IS   + K++  L + G V ++RG 
Sbjct: 1   MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L    + +T+  ++   E    +  C A     C +   C LT VL  A     D
Sbjct: 60  GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDHG-CVIHSFCKLTGVLANAERIQMD 118

Query: 121 VLTQYSIECLVRNRSSIKK 139
            L   ++  ++  R  + +
Sbjct: 119 YLNSVTLAEVIPTRKQLDR 137


>gi|269839251|ref|YP_003323943.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790981|gb|ACZ43121.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 153

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T R DY +R  +  A     P +  QI+EA  I   FL  IL  L +AG+V T RG+
Sbjct: 1   MHITARADYALRAAIEMAASWPQPLKGEQISEAQDIPIKFLESILLDLKRAGLVRTQRGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R   +I++ D+++A E         +  +I      +  L  V          
Sbjct: 61  AGGYWLGREPAEISLADIIRAVEGPLANVRGMSPEEITYKGRAA-TLRDVWVALRANMRA 119

Query: 121 VLTQYSIECLVRNR--SSIKKIFN 142
           VL   ++  +VR      +  +  
Sbjct: 120 VLETTTLAHMVRGELPEQLHPLLQ 143


>gi|210608482|ref|ZP_03287858.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
 gi|210153058|gb|EEA84064.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
          Length = 142

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + +++  A+H+  ++  R+  IA    +SE +L +I++ +    ++ + R
Sbjct: 1   MRISTKGTYALEIIVDLAMHSSEEHLERLKNIAARRGLSEKYLERIVKAMKNENLILSTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG RL R  + IT+LDV+++ E      EC             C    V        
Sbjct: 61  GAMGGYRLARRPEDITVLDVLRSVEGELAPVECLTKETNCGIACEDCLTRGVWADMWREI 120

Query: 119 FDVLTQYSIECLVRN 133
             V    S+  + + 
Sbjct: 121 LGVTENVSVADITKE 135


>gi|291447666|ref|ZP_06587056.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350613|gb|EFE77517.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 156

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+          ++A    +      K++  L   G+++  RG
Sbjct: 9   MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +V+  E    V EC       CPL  +C L   LR A +AF+
Sbjct: 69  RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 126

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 127 AALDPITVADLVASPTG 143


>gi|312115350|ref|YP_004012946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220479|gb|ADP71847.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 152

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ + + A +      ++S+IAEA  I + FL +I   L KAG V + +G+ 
Sbjct: 2   LTAKGKYGLKAMTHLARLAPGEIAQVSEIAEANSIPKKFLDQIFSELRKAGFVFSKKGKA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + A  I + D+V+  +       C +        DC   G C + +++ +  NA
Sbjct: 62  GGYALAKEASSINVGDIVRVLDGPLAPIPCASVTAYRACDDC-DCGECEVRAIMVEVRNA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              VL   ++      +S+ +++
Sbjct: 121 ISVVLDNRTLAQFAGLKSTRRRV 143


>gi|32476776|ref|NP_869770.1| hypothetical protein RB11077 [Rhodopirellula baltica SH 1]
 gi|32447322|emb|CAD77148.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 155

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT +TDY +R LMY A   +    ++ +A    IS   + K++  L + G V ++RG 
Sbjct: 15  MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 73

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L    + +T+  ++   E    +  C A     C +   C LT VL  A     D
Sbjct: 74  GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDHG-CVIHSFCKLTGVLANAERIQMD 132

Query: 121 VLTQYSIECLVRNRSSIKK 139
            L   ++  ++  R  + +
Sbjct: 133 YLNSVTLAEVIPTRKQLDR 151


>gi|218885727|ref|YP_002435048.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756681|gb|ACL07580.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 189

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++    Y  R+L+  A+H   D P   S++AE   IS  F+ KI++ L  AG+V +VR
Sbjct: 1   MRISSTVHYASRLLVNLALHCPQDGPLSASELAEHTGISVKFIEKIIRQLRTAGMVRSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L    D +T+ DV++  E       C      DC     C   +    A  A 
Sbjct: 61  GAAGGHVLTMNPDDVTLGDVLRVVEGGVQPPNCCVG--ADCDDTP-CRCKAAWTSAAKAL 117

Query: 119 FDVLTQYSIECLVR 132
            + L Q+++  ++ 
Sbjct: 118 EETLDQFTLTDIMH 131


>gi|15838078|ref|NP_298766.1| hypothetical protein XF1477 [Xylella fastidiosa 9a5c]
 gi|9106501|gb|AAF84286.1|AE003977_9 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 153

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+VE  RG  
Sbjct: 3   RVTKLTDYASVVLTVLAAHPGAVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGAY 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL  P  +IT++ +V+A E    + EC   H   C +   CG+ S  +         
Sbjct: 63  GGYRLAHPPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121

Query: 122 LTQYSIECLVR 132
           L   ++  ++ 
Sbjct: 122 LRSITLAQMLA 132


>gi|239944195|ref|ZP_04696132.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 148

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+          ++A    +      K++  L   G+++  RG
Sbjct: 1   MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +V+  E    V EC       CPL  +C L   LR A +AF+
Sbjct: 61  RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 119 AALDPITVADLVASPTG 135


>gi|86159005|ref|YP_465790.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775516|gb|ABC82353.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 159

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ DYG+R ++Y A I  D      +IA    + E FL KIL+ LV  G+V + RG 
Sbjct: 6   RISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRGP 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R    I+ LDV+++ E    +  C       C    +C + SV R       D
Sbjct: 66  HGGYALARMPVDISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERMLD 124

Query: 121 VLTQYSIECLV 131
           V  Q  +  L 
Sbjct: 125 VYRQAKLSELA 135


>gi|325479354|gb|EGC82450.1| putative HTH-type transcriptional regulator CymR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 133

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A + D     +S+++E   +SE +L ++++ L   G++++ RG
Sbjct: 1   MKLSTRGRYGLRAMCYLASNEDRGYISVSEMSEKLNLSENYLEQLIRLLKNDGLIKSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG ++ +  D+I++ +V++  E +  +++C +     C     C    V  +      
Sbjct: 61  PKGGYKITKDLDEISVGEVLRVLEGNITMSDCVSGEHF-CD--DKCDAYYVFNRIDQVIN 117

Query: 120 DVLTQYSIECLVRNR 134
           D +   S++ ++   
Sbjct: 118 DAVDSISLKNMINQE 132


>gi|54025656|ref|YP_119898.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54017164|dbj|BAD58534.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 152

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L++ TD G+R +M  A+    +    +  +A     SE ++ K +  L + G+V++ R
Sbjct: 1   MQLSRFTDLGLRAMMRLAVGGAAEERVTVRLVARQVNASEHYVAKAVTKLAELGLVDSHR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       T+  +V+  E +  V +C   H   CPL  +C L  +L  A   F
Sbjct: 61  GRTGGIFLTDRGRAATVGQIVRGLEGAAEVVDCAGEH--PCPLAAACRLRRMLADAQEMF 118

Query: 119 FDVLTQYSIECLVRNRS 135
           +  L +Y++  LV  R+
Sbjct: 119 YRELDKYTLRDLVDERT 135


>gi|182436058|ref|YP_001823777.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464574|dbj|BAG19094.1| putative transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 156

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ +   P    ++A    +      K++  L   G+++  RG
Sbjct: 9   MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L        I  +V+  E    V EC       CPL  +C L   LR A  AF+
Sbjct: 69  RGGGLTLTPAGRSTPIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 126

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 127 AALDPITVTDLVASPTG 143


>gi|257093906|ref|YP_003167547.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046430|gb|ACV35618.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 146

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T+ TDY +R L+Y     D    I +IAE   +S   L K++  L++AG VE +RG+
Sbjct: 1   MYITQHTDYALRALIYLGTSGDRLVTIQEIAERFGVSRNHLMKVVNALIRAGFVEGLRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R   +I +  VV+  E    + ECF S    C L   C L   L +AL AF  
Sbjct: 61  GGGLRLARAPGEIIVGAVVRQMEPGMCLVECFGSG-CQCILDPDCKLKVGLARALAAFLQ 119

Query: 121 VLTQYSIECLV-RNRSSIKKIF 141
           VL + ++  LV ++  SI K  
Sbjct: 120 VLDEMTLADLVGKSERSILKFL 141


>gi|255327681|ref|ZP_05368747.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
           25296]
 gi|255295355|gb|EET74706.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
           25296]
          Length = 156

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RVLM   A+         +IAE        + K +  LV  G +++ RG
Sbjct: 1   MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L       T+  V++ATE    + EC       CPL   C L +VL KA  AF+
Sbjct: 61  RSGGVMLSDAGRSATVGTVLRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             +    I  L      +  +F
Sbjct: 120 ASVDSVIISELTAGARPVGPVF 141


>gi|210608481|ref|ZP_03287857.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
 gi|210153057|gb|EEA84063.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
          Length = 144

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A H N  P  ++ IA+   +S  +L ++   L KAGIV++++G
Sbjct: 1   MKISTKGRYGLRALVDLAGHDNGEPIALASIAQRQKLSLNYLEQVFSVLRKAGIVKSLKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL + AD IT+ +V++  E  F + + +A  K    +  +     V  +      
Sbjct: 61  VNGGYRLAKKADDITVKEVLEVLEGKFSIVDEYAQEKGTDDVQEAIKT-LVWDQINTRVN 119

Query: 120 DVLTQYSIECLVRN 133
            +L + +++ L+ +
Sbjct: 120 QLLEEKTLKQLMAS 133


>gi|311899855|dbj|BAJ32263.1| putative transcriptional regulator NsrR [Kitasatospora setae
           KM-6054]
          Length = 167

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R+ M  A +  D      ++AE   +      K++  L   G+VE  RG
Sbjct: 1   MRLTKSTDIALRIAMRLAVLDEDQTPTTREVAEVVGVPYNHAAKVVSRLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  +V+  E    V  C       CPL  SC L   LR+A  AFF
Sbjct: 61  RGGGLALTAAGRTGSLGRIVRELEGVGDVVGC--EDDPPCPLRHSCRLRGALRRAQEAFF 118

Query: 120 DVLTQYSIECLVRN 133
             L   +++ LV +
Sbjct: 119 ATLDPLTVDDLVAD 132


>gi|325831666|ref|ZP_08164883.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
 gi|325486537|gb|EGC88986.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
           HGA1]
          Length = 179

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +R+++  A    +    + +++E   IS  +L ++ +PLV+AG++ +VRG+ 
Sbjct: 38  VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 97

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L +    I   DV++A E S     C      + CP  G C               
Sbjct: 98  GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 157

Query: 121 VLTQYSIECLV 131
            +   ++  L 
Sbjct: 158 YVDGVTLADLA 168


>gi|255523578|ref|ZP_05390546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296186461|ref|ZP_06854864.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
 gi|255512835|gb|EET89107.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           carboxidivorans P7]
 gi|296048908|gb|EFG88339.1| Rrf2 family protein (putative transcriptional regulator)
           [Clostridium carboxidivorans P7]
          Length = 167

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y I  L+Y           I  +A    ISE +L K+   L K+GI++++ G
Sbjct: 1   MKFSVGVEYAIHCLLYMVNSEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105
            +GG  L R A+ IT  ++V+A E S    +C                     CP    C
Sbjct: 61  VKGGYALARNAEDITFWNIVEAVEGSEPFFQCAEIRQNNILLDKDNLPDTHTKCP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECL---VRNRSSIKKIFNA 143
            +  V+ +A +     L+  ++  L   V N+   K++ NA
Sbjct: 117 LIKVVMLEAEDEMRKYLSNKTLAWLYDEVYNKKLPKEVKNA 157


>gi|126641679|ref|YP_001084663.1| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
 gi|169633489|ref|YP_001707225.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii SDF]
 gi|169796093|ref|YP_001713886.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii AYE]
 gi|169149020|emb|CAM86897.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii AYE]
 gi|169152281|emb|CAP01191.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
           clusters [Acinetobacter baumannii]
          Length = 147

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  L+  A+   +    +++IA    IS  +L ++   L + G+V +VRG  GG  L R 
Sbjct: 1   MTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARN 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           AD+IT+L++++A  E+     C   HK +C     C    + ++  +   D L + ++  
Sbjct: 61  ADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLAN 118

Query: 130 LV 131
           L+
Sbjct: 119 LI 120


>gi|260773391|ref|ZP_05882307.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14]
 gi|260612530|gb|EEX37733.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14]
          Length = 160

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+++   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALNSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAST 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+I  V+ A +ES    +C    K DC     C   ++     +   D L   ++  L+ 
Sbjct: 61  ISIGTVIAAVDESVDATKCHG--KGDCQGGTRCLTHTLWCDLSSRISDFLNNITLGELMV 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLQ 124


>gi|285017824|ref|YP_003375535.1| transcriptional regulator, rrf2 family transcription regulator
           protein [Xanthomonas albilineans GPE PC73]
 gi|283473042|emb|CBA15547.1| hypothetical transcriptional regulator, rrf2 family transcription
           regulator protein [Xanthomonas albilineans]
          Length = 152

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLNVLAARPTEVLSATELAEQAGLEPPTVSKLLKPLAQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA+ IT++++V+A E    + EC + H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARPANAITLIEIVEAMEGPLAITEC-SHHGNQCNITHTCGVRSNWRLINDVIADA 121

Query: 122 LTQYSIECLVR 132
           L   ++  ++R
Sbjct: 122 LGGVTLAQMLR 132


>gi|148558060|ref|YP_001257984.1| RrF2 family protein [Brucella ovis ATCC 25840]
 gi|148369345|gb|ABQ62217.1| RrF2 family protein [Brucella ovis ATCC 25840]
          Length = 143

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVLASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C       C +  V+     A 
Sbjct: 62  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 122 ANVLDHRTLAD 132


>gi|297623328|ref|YP_003704762.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297164508|gb|ADI14219.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 146

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT++  Y ++ L++ A  +   P  I+ IAE+  IS+ FL  IL  L   GI+++ +GR 
Sbjct: 4   LTQKAKYALKALVFLAKAYGKGPVLIANIAESEGISQKFLELILLELKNHGILQSKKGRG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP ++I +  V++  E +     C +    S   +C    +C + +V+ +   A
Sbjct: 64  GGYWLNRPPEEIYLGHVIRIFEGALAPLPCASKRYYSRCEECADEATCEVRAVMLEVKKA 123

Query: 118 FFDVLTQYSIEC 129
              VL   S++ 
Sbjct: 124 TLGVLDTTSLKD 135


>gi|114319885|ref|YP_741568.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226279|gb|ABI56078.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 153

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 62/137 (45%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + + TDYGI +L   A   +      ++A+   + +  + KIL+ L +AGI+ + RG +
Sbjct: 3   RINRETDYGIGILTAMARAPEQRFSTVRLADQQGLPQPMVAKILKNLARAGILVSYRGAK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA QI++ +++ A E      EC       C    +C  ++   +        
Sbjct: 63  GGYGLARPARQISVAEIITALEGPIAFTECVEEGVDACQYGDACTTSANWWRISQVVQHA 122

Query: 122 LTQYSIECLVRNRSSIK 138
           L   S++ +      ++
Sbjct: 123 LGSISLKDMSEPVVPLR 139


>gi|313672577|ref|YP_004050688.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939333|gb|ADR18525.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 132

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +TK +DY +RV+ + A        +  +++E C + + FL KILQ LVK+GI+E+ RG
Sbjct: 1   MKITKASDYALRVVGFFATAEKNRYYMRNELSEICNVPDSFLGKILQNLVKSGILESERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +RGG ++ +  +++T+ D++++ E    + EC       C + G+C + ++L +      
Sbjct: 61  KRGGFKMSKNPEEVTVYDIIRSVEGDVVINECLVEGNT-CKISGNCKIHNILDQVRCNLI 119

Query: 120 DVLTQYSIECLVR 132
           + L ++SI  LVR
Sbjct: 120 NELKRFSISDLVR 132


>gi|239618077|ref|YP_002941399.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
 gi|239506908|gb|ACR80395.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
          Length = 159

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  T ++ Y +R L   A+  +       +++IAE   I   FL KI   L  AG V+  
Sbjct: 1   MGFTVKSSYALRALYELALAAESGNPKLSLAKIAERDMIPRDFLEKIFAELRDAGFVKAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG  L +PA++I + DV+   ++      C      +C +  +C +  V  +  N+
Sbjct: 61  RGRYGGYVLAKPANEIYLRDVILKLDKPMNSYVCV-RENTECDIDPNCTVKYVWFRLYNS 119

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L + ++  L+     +KK
Sbjct: 120 MMRELGKMTLADLIEIGEKLKK 141


>gi|300920798|ref|ZP_07137199.1| Rrf2 family protein [Escherichia coli MS 115-1]
 gi|300412221|gb|EFJ95531.1| Rrf2 family protein [Escherichia coli MS 115-1]
          Length = 125

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL + A  I I D
Sbjct: 3   SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     +
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLMELDNYTLADLVEENQPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|30020894|ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|206971747|ref|ZP_03232696.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218231378|ref|YP_002367487.1| rrf2 family protein [Bacillus cereus B4264]
 gi|229079960|ref|ZP_04212491.1| Transcriptional regulator [Bacillus cereus Rock4-2]
 gi|229128112|ref|ZP_04257094.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|229150981|ref|ZP_04279192.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|229179055|ref|ZP_04306412.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|29896447|gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|206733132|gb|EDZ50305.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218159335|gb|ACK59327.1| rrf2 family protein [Bacillus cereus B4264]
 gi|228604423|gb|EEK61887.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|228632541|gb|EEK89159.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|228655387|gb|EEL11243.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|228703339|gb|EEL55794.1| Transcriptional regulator [Bacillus cereus Rock4-2]
          Length = 133

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|148979595|ref|ZP_01815600.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145961680|gb|EDK26977.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 160

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAGD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A +ES    +C      DC     C   ++ R   +     L   ++  L++
Sbjct: 61  IAVGTVIAAVDESVDATKCHGR--ADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|148244681|ref|YP_001219375.1| Fe-S cluster-containing transcription factor [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326508|dbj|BAF61651.1| Fe-S cluster-containing transcription factor [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 139

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A ++   P  +  I++   IS  +L ++   L +A +V++VRG
Sbjct: 1   MQLTTKGRYAVTAILDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A  I +  +++A +E+  +  C       C     C    +  +      
Sbjct: 61  PGGGYLLDAKACDINLTQIIEAVDENIDLRRCKGIKV--CNNGRQCISHQLWCEVSEQIR 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   +++ ++ + +S K +
Sbjct: 119 TFLNGKTLQMVIDDHNSNKGV 139


>gi|323702206|ref|ZP_08113873.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532893|gb|EGB22765.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
           nigrificans DSM 574]
          Length = 135

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R ++Y + +          IAE   I   FL KIL+ L ++GIVE++RG
Sbjct: 1   MRLNQATDYAFRAVLYLSRLPAGEVVEAKTIAEDEQIPIRFLLKILRLLSQSGIVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
             GG +L +   +ITI DVV+A E    V  C   H  +C   G+  C L   L      
Sbjct: 61  VSGGYKLAKKPKEITIKDVVEAVEGPIEVNRCLI-HPAECNKNGTGFCPLHKALFSIRQV 119

Query: 118 FFDVLTQYSIECL 130
               L  Y  E L
Sbjct: 120 LNRELASYDFETL 132


>gi|269965159|ref|ZP_06179293.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
 gi|269830145|gb|EEZ84372.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
          Length = 155

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGADAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I  V+ A +ES    +C    K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLE 124


>gi|294013220|ref|YP_003546680.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676550|dbj|BAI98068.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 141

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2   LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L      I+  D+V+ T  S  +  C +        +C     C L  V+ +  + 
Sbjct: 62  GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121

Query: 118 FFDVLTQYSIEC 129
              VL   S+  
Sbjct: 122 TAKVLDSISLAE 133


>gi|307293474|ref|ZP_07573318.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306879625|gb|EFN10842.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 141

 Score =  135 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2   LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L      I+  D+V+ T  S  +  C +        +C     C L  V+ +  + 
Sbjct: 62  GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121

Query: 118 FFDVLTQYSIEC 129
              VL   S+  
Sbjct: 122 TAKVLDSISLAE 133


>gi|296132372|ref|YP_003639619.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
 gi|296030950|gb|ADG81718.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR]
          Length = 134

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+ + TDY  R +++ A            IA    I   FL KI+  L+KAGIV++ RG
Sbjct: 1   MHINQATDYAFRAVLFLAQQPKGKVVEAQVIARKEVIPMRFLLKIMPSLIKAGIVKSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
             GG  L +    I+ LDVV A E    +  C    +  C   G   C +   L      
Sbjct: 61  VGGGYYLAKDPRDISFLDVVTAIEGPVAINRCLIDPEY-CSKKGPPGCKVHRALDGIQKK 119

Query: 118 FFDVLTQYSIECLVR 132
            ++ L  ++   L+ 
Sbjct: 120 LYNELKNHNFGNLIN 134


>gi|281356072|ref|ZP_06242565.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
 gi|281317441|gb|EFB01462.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
           ATCC BAA-548]
          Length = 145

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 3/136 (2%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+ ++ YG+R+L+  A    +    ++ ++AE   IS+ ++ +I+  L  +G+V + RGR
Sbjct: 4   LSTKSRYGLRILLQLAQCRGSGRSCKVRELAEQQSISDAYVEQIMIALKGSGLVFSARGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R    IT+LDV++  E    +  C    +  C  +  C   +V ++   AF  
Sbjct: 64  NGGYLLGRVPADITVLDVIELFEGRIDLVGCTGPEQ-RCARIAGCLSRTVWQRLSEAFRR 122

Query: 121 VLTQYSIECLVRNRSS 136
                ++  ++ +  +
Sbjct: 123 EAAAITLADILNSPPA 138


>gi|269962422|ref|ZP_06176772.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
 gi|269832918|gb|EEZ87027.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
          Length = 155

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H+   P  ++ I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  
Sbjct: 1   MLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAHS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I  V+ A +ES    +C    K DC     C   ++ R   +   D L   ++  L+ 
Sbjct: 61  IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118

Query: 133 NRSSIK 138
           +   ++
Sbjct: 119 DNEVLQ 124


>gi|237785127|ref|YP_002905832.1| Rrf2 family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758039|gb|ACR17289.1| transcriptional regulator, Rrf2 family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 139

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LTK +D G+R LM+     +      ++AEA       + K++  L + GI++  RGR
Sbjct: 1   MNLTKFSDLGLRALMHMVGSGNARTTAREVAEAINAPRTHVSKVISRLTEFGIIDATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L   A+  ++  +V+  E    V +C   H   CP   +C L   L +A  AFF 
Sbjct: 61  GGGITLVDGAEDYSVGAIVRFLEGPSPVIDC--EHPHPCPFNVNCRLQHELAQAQEAFFA 118

Query: 121 VLTQYSIECLVRNRSSI 137
            L   +I+ +   R  +
Sbjct: 119 SLDAVAIKDITPVRPQV 135


>gi|114798504|ref|YP_760252.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114738678|gb|ABI76803.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 136

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 70/131 (53%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   D     +++AE   +S   L KI+Q L  AG+++T RG 
Sbjct: 1   MRLTAFTDYGLRMLMRMASAPDRAFSTAELAEEFGLSRNHLAKIMQRLAGAGLIQTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I +  +++  EE   + EC ++    C L   C L + L+ A  AF  
Sbjct: 61  GGGAELGRPANEIRLGAIIRLLEEGQPLVECLSADGGACTLTPRCRLKARLQSAEMAFLS 120

Query: 121 VLTQYSIECLV 131
            L Q ++  + 
Sbjct: 121 ELDQSTLADIA 131


>gi|254384664|ref|ZP_05000003.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343548|gb|EDX24514.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 163

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD  +RVLM  A+ +        +A    +      K++  L   G++E  RGR
Sbjct: 13  MRLTRFTDLALRVLMRLAVADADLPTTRDVAATMEVPYTHSAKVVARLRHLGLIEARRGR 72

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+  E +  V +C     + CPL G+C L   LR A  AFF 
Sbjct: 73  GGGLALTAAGRAASVGGVVRELEGAGDVVDC--DGAVPCPLRGACVLRGALRGAQEAFFA 130

Query: 121 VLTQYSIECLVRNRSS 136
            L   ++  LV   + 
Sbjct: 131 ALDPLTVNDLVAAPTG 146


>gi|302522427|ref|ZP_07274769.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. SPB78]
 gi|302431322|gb|EFL03138.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. SPB78]
          Length = 151

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A  ++  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGRLAYP-GPAAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   + +
Sbjct: 120 LLGEVSLASLAREAPTTR 137


>gi|309791704|ref|ZP_07686195.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308226254|gb|EFO79991.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 146

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DY +R L   A H    P +  +IA    I   +L  +L  L KAG++E++RG
Sbjct: 1   MRISNKGDYALRALFDLAQHIGRGPIQSDEIATRQGIPVNYLNHLLISLRKAGLIESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + IT+L++ +  E     AE      I         +     +      
Sbjct: 61  SQGGHLLARSPESITLLEIFEVVEGQLLCAEPARDDLIPTVPEDRQLINDFWVQLRQRVE 120

Query: 120 DVLTQYSIECLVRNRSS 136
            +L   +++ L + +  
Sbjct: 121 QMLAGITLDDLCQRKQQ 137


>gi|28211027|ref|NP_781971.1| RRF2 family protein [Clostridium tetani E88]
 gi|28203466|gb|AAO35908.1| RRF2 family protein [Clostridium tetani E88]
          Length = 148

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ ++   +++         I+E   ISE +L +IL  L K G++ + +G
Sbjct: 4   MQISTKGRYGLKAMVNIGVYSSLESVTKKSISEMEDISEKYLEQILSVLKKNGLINSKKG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  ++IT+ D+++  E    V         D  ++  C   +V  K      
Sbjct: 64  PQGGYTLARNDNEITVGDILRTLEGELEVVN--LEEYNDSNIMELCLKRNVWNKLNKEIN 121

Query: 120 DVLTQYSIECLVRNRSSIK 138
            ++   ++E LV+     K
Sbjct: 122 TLVDSITLEELVQEYKGYK 140


>gi|229070249|ref|ZP_04203500.1| Transcriptional regulator [Bacillus cereus F65185]
 gi|228712867|gb|EEL64791.1| Transcriptional regulator [Bacillus cereus F65185]
          Length = 133

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  + + A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMFFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|77165949|ref|YP_344474.1| hypothetical protein Noc_2491 [Nitrosococcus oceani ATCC 19707]
 gi|254433726|ref|ZP_05047234.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
 gi|76884263|gb|ABA58944.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207090059|gb|EDZ67330.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
          Length = 158

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDY I ++   A+     +  + ++    +    + KIL+ L +AG++ + RG +
Sbjct: 3   RMSKMTDYAIVLMTRLAMDPKGQHAAADLSAQVEMPLPTVSKILKQLARAGLLLSARGAQ 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP + I++ +++   E    + EC ++   +C     C   +   +   A +  
Sbjct: 63  GGYSLGRPPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCSTRAHWEQINQAVYGA 121

Query: 122 LTQYSIECLVR 132
           L +  +  +V+
Sbjct: 122 LNEIKLSDMVQ 132


>gi|317488646|ref|ZP_07947188.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316912252|gb|EFV33819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 147

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +R+++  A    +    + +++E   IS  +L ++ +PLV+AG++ +VRG+ 
Sbjct: 6   VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L +    I   DV++A E S     C      + CP  G C               
Sbjct: 66  GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 125

Query: 121 VLTQYSIECLV 131
            +   ++  L 
Sbjct: 126 YVDGVTLADLA 136


>gi|219847295|ref|YP_002461728.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus aggregans
           DSM 9485]
 gi|219541554|gb|ACL23292.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus aggregans
           DSM 9485]
          Length = 146

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R +   A H  + P +   IA    I   +L ++L  L +AG+VE++RG
Sbjct: 1   MRISSKGEYGLRAVFDLAQHYGEGPIQSESIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  + I++L+V+   E      E           +    +  V  +      
Sbjct: 61  PQGGHLLARSPETISLLEVLTVLEGPILPTEGGRDDLQPTEPLDRALIDEVWSELRTLIE 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +++ L + + S
Sbjct: 121 QRLAGLTLDDLCQRKRS 137


>gi|126347965|emb|CAJ89685.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 172

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 2   HLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            LTK TD  +R +M  A+    D P    ++AEA  +      K +  L   G+VE  RG
Sbjct: 26  RLTKFTDLALRSVMRLAVVRDGDDPLTTREVAEAVGVPYTHAAKAITRLRHLGVVEARRG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L  P  + ++  +V+  E    V  C       CPL G+C L   LR+A  AF+
Sbjct: 86  RGGGLTLTDPGRRASVGRLVRELEGDGEVVAC--EGDSPCPLRGACRLRGALREAQEAFY 143

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 144 AALDPLTVTDLVASPTG 160


>gi|220904349|ref|YP_002479661.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868648|gb|ACL48983.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 147

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+  A        ++ Q+A    IS  +L +I++ L   GI+  VRG
Sbjct: 1   MRFSTRTRYGLRFLLRLAAQPQGSLLQLGQVAREENISSGYLEQIVRALRPMGILRAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P  +I + +V +  E       C +  +  C     C       +      
Sbjct: 61  SGGGYALAKPPAEINMEEVFQHLEGEISPVRCLSKGR-SCQREKQCSTREFWSELDGHIR 119

Query: 120 DVLTQYSIECLVRNRS 135
             L Q +++ ++ +  
Sbjct: 120 SFLQQRTLQEIIESEK 135


>gi|78063784|ref|YP_373692.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77971669|gb|ABB13048.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 173

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++   +YG+  L+Y A  +       +  +AE   +S  +  K+   L KAGIV +  G 
Sbjct: 4   ISTGVEYGLHCLLYLADTSTGVRDASVRDLAEMQGVSVDYAAKLFTRLAKAGIVVSSEGI 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
           RGG  L RPA  I++ DVV+A +    + +C         F          G+C + +V+
Sbjct: 64  RGGFALARPARDISVQDVVEAIDGDKRLFDCREVRGQCAVFEGEPPAWATRGTCSIHAVM 123

Query: 112 RKALNAFFDVLTQYSIECLV 131
           + A  A  + L + S+  L 
Sbjct: 124 QAAERAMREELKKQSLADLA 143


>gi|21911420|gb|AAM80543.1| StaS [Streptomyces toyocaensis]
          Length = 154

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T RTDY +R +   A   + P    +++    I   FLF IL+ L  A +V +VRG 
Sbjct: 1   MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L   A++IT+  V++A +         +   ++ P   +  L  V R    +   
Sbjct: 61  QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYP-GPAAVLPDVWRAVRTSLRQ 119

Query: 121 VLTQYSIECLVRNR 134
           VL   ++  L R  
Sbjct: 120 VLETTTLADLARGE 133


>gi|302671823|ref|YP_003831783.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
           B316]
 gi|302396296|gb|ADL35201.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
           B316]
          Length = 131

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + ++ Y +R+L+  A   +D    +  IAE   IS+ +L  I + LVK G++    G+ 
Sbjct: 2   FSTKSRYALRILIDLAQQKSDDFIPLKDIAERQDISKKYLEIIAKDLVKGGLIRGASGKH 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R  +  ++ +++   E +F    C   +  +CP  G C   S+  +      + 
Sbjct: 62  GGYMLTRAPEDYSVGEIIDHMEGTFAPVVCLEENAGECPRSGVCKTISMWTEFYELERNF 121

Query: 122 LTQYSIECLV 131
                +  L+
Sbjct: 122 FYGKKLSDLL 131


>gi|307294771|ref|ZP_07574613.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
 gi|306879245|gb|EFN10463.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
           chlorophenolicum L-1]
          Length = 165

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY------------PNRISQIAEACCISELFLFKILQPL 48
           M L+   DY + ++   A H                   + ++    I      K++  L
Sbjct: 1   MRLSSFADYAVVLMSAAARHCGAGAGLDPATNKYVKMNATTLSAETGIPLPTAQKLVSRL 60

Query: 49  VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
             AG++E+ RG  GGVRL RP   IT+ DVV+A E    +  C      DC L   C + 
Sbjct: 61  SAAGLLESSRGTGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIR 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
             +  A NA    L   +I  L R 
Sbjct: 121 PHMNVANNAIRSALAGVTIASLARE 145


>gi|153938123|ref|YP_001392722.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934019|gb|ABS39517.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320703|gb|ADG01081.1| putative transcriptional regulator [Clostridium botulinum F str.
           230613]
          Length = 133

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+   +    + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + I+ LD++ A E    + +C             C +  V+  A     
Sbjct: 61  VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L+   I  LV+ 
Sbjct: 115 EELSNQKISDLVKK 128


>gi|103486168|ref|YP_615729.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976245|gb|ABF52396.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 166

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + ++   A      P   + +AE   I      K++  L +AG++   RG
Sbjct: 1   MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL RPA  I++ D+++A E    +  C A  + DC L GSC +         A  
Sbjct: 61  SGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVR 120

Query: 120 DVLTQYSIECL 130
             L + S+  L
Sbjct: 121 GALAEISLASL 131


>gi|227357123|ref|ZP_03841492.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227162655|gb|EEI47622.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 126

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       I+++ +   +S   + KI+  L   G VE +RG+ GG+RL +PA  I + +
Sbjct: 3   SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRGKNGGIRLGKPAADIIVGE 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+A E    +  C A     C +  +C L  VL +A+  F   L ++++  LV N S +
Sbjct: 63  VVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSPL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|296123422|ref|YP_003631200.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
           3776]
 gi|296015762|gb|ADG69001.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
           DSM 3776]
          Length = 156

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 5/149 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L++++DY +R L+  AI       P  + ++A+   I   FL  I+  L  AG V +V
Sbjct: 1   MKLSRKSDYALRALVTLAIRQREGGPPTPVRELAKINDIPRRFLEMIMLELKAAGWVTSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
            GR GG  L  P +Q+++  VV+  + +     C + +H   C    SC    VL    N
Sbjct: 61  AGRIGGFHLAVPPEQLSMGQVVRLFDGTLAPLPCVSVTHHEVCSQETSCRFRRVLLDIRN 120

Query: 117 AFFDVLTQYSIECLVRNRSSIK-KIFNAG 144
                + Q +++ +V ++  ++ +IF  G
Sbjct: 121 YTARRMDQATLQAVVDSQPVMREEIFAVG 149


>gi|323137714|ref|ZP_08072790.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
 gi|322397011|gb|EFX99536.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
          Length = 150

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 71/142 (50%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  +D   R L++  +  +    I +I+ A   SE  L K+   LVK  ++   RGR
Sbjct: 1   MRLTTHSDLAFRTLIFLGVAGERGATIPEISSAFGASEHHLRKVAFELVKLELIRATRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     Q+TI ++++  E  F  +EC  + +  C + G+CGL  V  ++L A F 
Sbjct: 61  NGGLALNISPAQVTIGELLRKLEPEFAESECLGAGQKGCVIFGACGLQRVFNESLGALFG 120

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           VL +Y++  ++ +   +     
Sbjct: 121 VLDRYTLADVLDSSQGVAARLG 142


>gi|313672582|ref|YP_004050693.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939338|gb|ADR18530.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 137

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 4/130 (3%)

Query: 1   MHLTKRTDYGIRVLM-YCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T ++ Y IR +    A+  D  P  I +I++   IS  +L ++   L K  IV++VR
Sbjct: 1   MKITTKSRYAIRAIFAMIALGGDKEPVSIKKISDFEDISIKYLEQLFTKLRKNKIVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG    +P ++IT+ D+V + +      +C  S+   C     C +  V        
Sbjct: 61  GTLGGYIFAKPLNEITLRDIVYSMDGPIKPVDCIDSNG--CEKSSVCAVNWVWFGLKKDI 118

Query: 119 FDVLTQYSIE 128
            + L + +++
Sbjct: 119 DNYLERITLQ 128


>gi|226303826|ref|YP_002763784.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229492573|ref|ZP_04386376.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
           erythropolis SK121]
 gi|226182941|dbj|BAH31045.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
           PR4]
 gi|229320559|gb|EEN86377.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
           erythropolis SK121]
          Length = 151

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T + DY +R L+  A     P +   +A++  I   FL  +L  L + G+V + RG 
Sbjct: 1   MHITAKVDYAVRTLVELAAVGPDPAKAEFLAKSQVIPHKFLEAVLSDLRRGGLVNSRRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R AD+ITI DV++A E             +D     +  L  V          
Sbjct: 61  DGGYWLARSADEITIADVIRAVEGPLASIRGQRPEDVDY-GGPATPLKEVWIAVRVNLRA 119

Query: 121 VLTQYSIECLV 131
           VL   ++  + 
Sbjct: 120 VLENVTLTDVA 130


>gi|241206059|ref|YP_002977155.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859949|gb|ACS57616.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 154

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   ++E  V +  SI
Sbjct: 122 IAAILDNMTLEQFVADGGSI 141


>gi|326776682|ref|ZP_08235947.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
           griseus XylebKG-1]
 gi|326657015|gb|EGE41861.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
           griseus XylebKG-1]
          Length = 148

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD  +RVLM  A+ +   P    ++A    +      K++  L   G+++  RG
Sbjct: 1   MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L        I  +V+  E    V EC       CPL  +C L   LR A  AF+
Sbjct: 61  RGGGLTLTPAGRSTPIGPLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 119 AALDPITVTDLVASPTG 135


>gi|295688500|ref|YP_003592193.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295430403|gb|ADG09575.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 143

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A  N       ++AE       FL  IL  L + G++ + RG+ G
Sbjct: 2   LSQKARYALRAMIELARENGQ-VTAGELAERADAPRKFLEAILLSLSREGLIISRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L R ADQI+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYVLGRTADQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDIATCALREALLRARDAT 120

Query: 119 FDVLTQYSIECLVR 132
             VL  YS+   V+
Sbjct: 121 AAVLEGYSLADAVQ 134


>gi|152985752|ref|YP_001349321.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960910|gb|ABR82935.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 174

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++ A        + +  +AE   +    L K+   L KAG+V   
Sbjct: 1   MALYSAGVEYGIHCLLFLADEKGDSRESSVRALAELQGVPPELLAKVFTRLAKAGLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RPA++I++LDVV+A +    + EC         F  +        +C + 
Sbjct: 61  EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREIRERCALFEGNPPSWATRNTCSIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  LVR 
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145


>gi|225628410|ref|ZP_03786444.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
 gi|225616256|gb|EEH13304.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
           Cudo]
          Length = 166

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C         +  V+     A 
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAEWQVRHVMLDVREAI 144

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 145 ANVLDHRTLAD 155


>gi|298530274|ref|ZP_07017676.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509648|gb|EFI33552.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 143

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+  +Y +R ++Y A            ++A+A  I E F+ K+ Q L +AGI++  +
Sbjct: 1   MMLTRGGEYAVRCVLYLAACTTPGQVAPKKEVAQAMQIPESFMAKVAQTLSRAGIIQITQ 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG RL +   ++++L VV+A +   F+ +C  S +  C    SCG+  V   A    
Sbjct: 61  GARGGYRLLKDPSRLSLLQVVEAVDGEIFLNQCIMSPE-SCRRSPSCGVHRVWETARQRL 119

Query: 119 FDVLTQYSIECLVRNR 134
              L +     L R  
Sbjct: 120 RQTLDETDFATLAREE 135


>gi|167628913|ref|YP_001679412.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591653|gb|ABZ83401.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 161

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++K+TDY +R L   A  +   P  + ++AE   I + FL  I+  + +   V +V G
Sbjct: 1   MKISKKTDYALRALCDLAECYGKDPIPLRELAEKRGIPKRFLEHIMLYMKEKKWVASVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           + GG  L  P ++IT+ +VV+  +       C +  +  C     SC    ++    +  
Sbjct: 61  KYGGYVLACPPEEITLGEVVRHFDGILAPIGCVSVTQYQCCAEEKSCKFRPLMADIRDFV 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
              +   ++  ++     +
Sbjct: 121 AKQMDSTTLRSIIEGAPML 139


>gi|83310381|ref|YP_420645.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945222|dbj|BAE50086.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 128

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TD+ IR+L+Y + H D    + ++AE   IS   L KI++ L + G ++TVRG+
Sbjct: 1   MKITQFTDFSIRLLIYLSRHPDRVVTVREVAEYYDISAEHLKKIVRSLAELGHIQTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I +  + +  +E+  +  C       CP+   C L  ++  AL AF  
Sbjct: 61  HGGLRLGREPQAIDLGHLFRQ-QENLALLPCH-EPCDSCPIAD-CRLRGLVDSALAAFLA 117

Query: 121 VLTQYSIECLV 131
           V    ++  ++
Sbjct: 118 VFDGKTLADVI 128


>gi|226326637|ref|ZP_03802155.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
 gi|225204858|gb|EEG87212.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
          Length = 126

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       I+++ +   +S   + KI+  L   G VE +RG+ GG+RL +PA  I + +
Sbjct: 3   SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHLGFVEAIRGKNGGIRLGKPATDIIVGE 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VV+A E    +  C A     C +  +C L  VL +A+  F   L ++++  LV N SS+
Sbjct: 63  VVRALE-PLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSSL 118

Query: 138 KKIF 141
            K+ 
Sbjct: 119 YKLL 122


>gi|71274966|ref|ZP_00651254.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
 gi|71901204|ref|ZP_00683307.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|170730004|ref|YP_001775437.1| hypothetical protein Xfasm12_0819 [Xylella fastidiosa M12]
 gi|71164698|gb|EAO14412.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
 gi|71729048|gb|EAO31176.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|167964797|gb|ACA11807.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 153

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+VE  RG  
Sbjct: 3   RVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGAY 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R   +IT++ +V+A E    + EC   H   C +   CG+ S  +         
Sbjct: 63  GGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121

Query: 122 LTQYSIECLVR 132
           L   ++  ++ 
Sbjct: 122 LRSITLAQMLA 132


>gi|307325862|ref|ZP_07605062.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888650|gb|EFN19636.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 149

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TD  +R +M  A+    P    Q+A    +    L K+   L   G++ET RGR
Sbjct: 1   MRLTKSTDLALRTIMRLAVTGAEPCTARQVAGELQVPYSHLAKVAARLQHLGLIETRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  +V+  E    V +C       CPL   C L   LR+A  AF  
Sbjct: 61  GGGLALTATGRTASVGQLVREFEGVGDVVDC--EGDTPCPLRQGCRLRMALRRAQEAFLA 118

Query: 121 VLTQYSIECLVRNRSS 136
            L   +++ LV + + 
Sbjct: 119 SLDPLTVDDLVASPTG 134


>gi|312115582|ref|YP_004013178.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220711|gb|ADP72079.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A  ND  P  +S I+    +S  +L ++   L + GIV++VRG
Sbjct: 1   MLLSTKGRYAVMAIVEVARQNDARPLALSDISLRLDLSLAYLEQLFMKLRRKGIVQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD I+I +V+ A +E   +  C    K  C     C   ++         
Sbjct: 61  PGGGYILARNADAISIGEVMAAVDEPVRMTRCEPEDKAGCVASKRCSTHNLWLALGTHIE 120

Query: 120 DVLTQYSIECLVRNR 134
             L   ++  ++  R
Sbjct: 121 RFLADATVADVLTGR 135


>gi|225874112|ref|YP_002755571.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793907|gb|ACO33997.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 151

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LTK+ DYG+  + Y A H   P+     IAEA  I    L KILQ L + G++ +  G 
Sbjct: 3   RLTKKADYGLMAVKYLAEHAGEPSRSAKDIAEAYHIPAQLLAKILQKLTREGLLRSHAGM 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R A  I+  +V++A +   F+  C     + C L  SC +   L +   +  D
Sbjct: 63  NGGYSLTRAAKDISAFEVIRAIDGPLFITSCTTGTSV-CDLTASCTIKEPLARVNESIID 121

Query: 121 VLTQYSIECLVRNR 134
           +L +  I  L+ + 
Sbjct: 122 LLRKTRISDLMDHE 135


>gi|296123021|ref|YP_003630799.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
           3776]
 gi|296015361|gb|ADG68600.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
           DSM 3776]
          Length = 154

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+++ DY +R+L+  A    + P  +S++A      + FL  I+  L   G +E+  G
Sbjct: 1   MKLSRKADYALRILITLAARFGESPISLSELARMNDAPKRFLEHIVLDLKSQGWIESSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
           R+GG  L +P +QIT+  V++  +     + C + S    C     C    VL +  N  
Sbjct: 61  RKGGYVLAQPPEQITMGQVIRFFDGVIAPSPCVSTSAHRPCSQARLCRFRRVLLEIRNFA 120

Query: 119 FDVLTQYSIECLVR 132
              L   ++  L+ 
Sbjct: 121 SRYLDNMTLARLID 134


>gi|229133660|ref|ZP_04262486.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
 gi|228649695|gb|EEL05704.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
          Length = 133

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    + I+ LD++ A E    + EC   H+        C +  V+ +A     
Sbjct: 61  PKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCLHHEPG------CVINEVMLEAEGKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIADLTKK 128


>gi|168181991|ref|ZP_02616655.1| oligopeptide transport system permease protein OppB [Clostridium
           botulinum Bf]
 gi|237796821|ref|YP_002864373.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674817|gb|EDT86778.1| oligopeptide transport system permease protein OppB [Clostridium
           botulinum Bf]
 gi|229263736|gb|ACQ54769.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 133

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+   +    + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + I+ LD++ A E    + +C             C +  V+  A     
Sbjct: 61  VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  LV+ 
Sbjct: 115 EELRNQKISDLVKK 128


>gi|150376652|ref|YP_001313248.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150031199|gb|ABR63315.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 179

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ ++  A +       I++IA    + + FL  I+  L  AG + + +G  
Sbjct: 27  LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 86

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I +  V++  +       C +        DC    +C +   +    +A
Sbjct: 87  GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEMCDDCSDPENCHVRRSMIVVRDA 146

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
             ++L   ++     +      +
Sbjct: 147 VANILDNMTLAQFAASEKDAADV 169


>gi|49081590|gb|AAT50195.1| PA2692 [synthetic construct]
          Length = 175

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++ A        + +  +AE   +    L K+   L KAG+V   
Sbjct: 1   MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RPA++I++LDVV+A +    + EC         F  +        +C + 
Sbjct: 61  EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  LVR 
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145


>gi|311694378|gb|ADP97251.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
          Length = 152

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H D  P  ++ I+    IS  +L ++   L +  +V ++RG  GG RL RPA  
Sbjct: 1   MLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSIRGPGGGYRLSRPAAD 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + I +VV A  ES     C   +K DC     C    +     +     L++ S+  L+R
Sbjct: 61  LYIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIHQFLSEISLGDLMR 118

Query: 133 NRSSIKKIFN 142
            +  I+++ +
Sbjct: 119 -KHEIRQVAD 127


>gi|332968974|gb|EGK08018.1| transcriptional repressor NsrR [Kingella kingae ATCC 23330]
          Length = 147

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT++TDY +RVL+Y AI++D    I++IA+   IS+  L K++  LVK G + ++RG+
Sbjct: 1   MHLTQQTDYALRVLIYAAINDDGLVNIAEIAKVYNISKSHLMKVVTALVKGGFLYSIRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P  +I + +VV+  E    + ECF   + +C +   C L  +L   L  F  
Sbjct: 61  GGGLRLGKPTAEINVGEVVRLME-PLTIVECFGD-RNECLISPHCRLAGILNSGLKVFLS 118

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L +Y++  L+   S  +K+ 
Sbjct: 119 HLDKYTLADLI--NSDTQKML 137


>gi|15964324|ref|NP_384677.1| hypothetical protein SMc02267 [Sinorhizobium meliloti 1021]
 gi|307307060|ref|ZP_07586799.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307320140|ref|ZP_07599560.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|15073501|emb|CAC45143.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894186|gb|EFN24952.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306902000|gb|EFN32599.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 151

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I++IA+   I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGQTAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEMCDDCTDPETCRVRISMTSVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++     
Sbjct: 122 MSSILDSMTLAEFAA 136


>gi|15597888|ref|NP_251382.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107102215|ref|ZP_01366133.1| hypothetical protein PaerPA_01003266 [Pseudomonas aeruginosa PACS2]
 gi|116050677|ref|YP_790503.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891147|ref|YP_002440013.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254235672|ref|ZP_04928995.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
 gi|254241118|ref|ZP_04934440.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
 gi|296388842|ref|ZP_06878317.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313107747|ref|ZP_07793927.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9948765|gb|AAG06080.1|AE004697_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585898|gb|ABJ11913.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167603|gb|EAZ53114.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
 gi|126194496|gb|EAZ58559.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
 gi|218771372|emb|CAW27139.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310880429|gb|EFQ39023.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 174

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++ A        + +  +AE   +    L K+   L KAG+V   
Sbjct: 1   MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RPA++I++LDVV+A +    + EC         F  +        +C + 
Sbjct: 61  EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  LVR 
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145


>gi|332521686|ref|ZP_08398139.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
           5H-3-7-4]
 gi|332042775|gb|EGI78975.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
           5H-3-7-4]
          Length = 135

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L+Y A      P +I+ I++A  IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALVYLAKQEVRVPVQIATISKAENISQKFLESILLTLKKKGILGSKKGKL 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + + +V++  E    +  C    F     DCP    C + +++ +  ++
Sbjct: 62  GGYYLVKEPETVAMAEVMRVLEGPIAMVPCVSLNFYEPCDDCPDETVCAVHNLMEEVRDS 121

Query: 118 FFDVLTQYSIECLV 131
              +    ++   +
Sbjct: 122 SLKIFNNKTLADFI 135


>gi|161505868|ref|YP_001572980.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867215|gb|ABX23838.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 167

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM             + +IA+   +   +L KI   L KAG+V ++ G+ 
Sbjct: 5   SSGVEYGIHSLMCMVDSKGDAREMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L +PA+ IT+LDVV A +    + EC         F          G CG+ SV+ 
Sbjct: 65  GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLTVFDEQPPAWACEGICGVRSVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L Q++I  L R 
Sbjct: 125 MAQQRMEEALEQHTILDLARK 145


>gi|238018522|ref|ZP_04598948.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748]
 gi|269798637|ref|YP_003312537.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Veillonella parvula DSM 2008]
 gi|313894420|ref|ZP_07827985.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|237864993|gb|EEP66283.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748]
 gi|269095266|gb|ACZ25257.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
           DSM 2008]
 gi|313441244|gb|EFR59671.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 149

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + VL+  A    D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1   MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL +   + TI++++ ATEES  +          D  +              N  
Sbjct: 61  KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118

Query: 119 FDVLTQYSIECLVR 132
            D L   +++ ++ 
Sbjct: 119 HDYLENVTLQDVID 132


>gi|307326576|ref|ZP_07605770.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887770|gb|EFN18762.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 154

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T ++DY +R +   A     P    Q+A    I   FLF IL+ L  A +V +VRG 
Sbjct: 1   MRITAKSDYAVRAMAELAAAEGSPLTAEQVATRQDIPLRFLFGILRELRLAHLVRSVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA +IT+ D ++A +             ++ P   +  L  V R    +   
Sbjct: 61  EGGYLLARPAKEITLADAIRAMDGPLANVRDVGLSGLEYPGAAA-VLPDVWRAVRASLRQ 119

Query: 121 VLTQYSIECLVRNR 134
           VL + +   L    
Sbjct: 120 VLEKTTFADLAAGE 133


>gi|282899141|ref|ZP_06307122.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196057|gb|EFA70973.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 149

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  N  P +I QIA    I + +L ++L  L + GI+++ R
Sbjct: 1   MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT+LD+++  E     +AE   + K       S  +  + ++A  A
Sbjct: 61  GSKGGYLLAREPRKITLLDILECLEGLDIKIAEDNTNPKTAPKTADSGIIDEIWKEARQA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              VL +YS+E L   R+  +++
Sbjct: 121 ANLVLEKYSLEDLCEKRTLRRQL 143


>gi|16264868|ref|NP_437660.1| hypothetical protein SM_b20994 [Sinorhizobium meliloti 1021]
 gi|307307992|ref|ZP_07587710.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|15141007|emb|CAC49520.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306901396|gb|EFN32000.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 177

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ ++  A +       I++IA    + + FL  I+  L  AG + + +G  
Sbjct: 28  LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 87

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I +  V++  +       C +        DC    +C +   +    +A
Sbjct: 88  GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDA 147

Query: 118 FFDVLTQYSIECLVRNRSS 136
             D+L   ++     +   
Sbjct: 148 VADILDNMTLAQFAASERE 166


>gi|257462826|ref|ZP_05627232.1| RRF2 family protein [Fusobacterium sp. D12]
 gi|317060455|ref|ZP_07924940.1| rrf2 family protein [Fusobacterium sp. D12]
 gi|313686131|gb|EFS22966.1| rrf2 family protein [Fusobacterium sp. D12]
          Length = 138

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C     H+  C     CG T +  K  +
Sbjct: 61  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCK-ETICGSTCIWSKLDH 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 120 ALTKILSDTTLEDFINN 136


>gi|312887338|ref|ZP_07746939.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
 gi|311300141|gb|EFQ77209.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
          Length = 145

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    +  + P +IS+IAE   I + FL +IL  L  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVSLGKNMGNPPVQISKIAEEEKIPKKFLEQILLDLRNAGFLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I ++ V++ T+    +  C    F     +C    +CG+ SV     + 
Sbjct: 62  GGYSLNKDPKEIFLVQVMRITDGPIAMVPCASLNFYHKCEECKSELTCGIRSVFIDVRDV 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
              +L++ SI  ++    ++  + 
Sbjct: 122 TLKILSETSIADIIEREVNLISLI 145


>gi|237744245|ref|ZP_04574726.1| RRF2 family protein [Fusobacterium sp. 7_1]
 gi|256027909|ref|ZP_05441743.1| RRF2 family protein [Fusobacterium sp. D11]
 gi|260494171|ref|ZP_05814302.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_33]
 gi|289765858|ref|ZP_06525236.1| RRF2 family protein [Fusobacterium sp. D11]
 gi|229431474|gb|EEO41686.1| RRF2 family protein [Fusobacterium sp. 7_1]
 gi|260198317|gb|EEW95833.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_33]
 gi|289717413|gb|EFD81425.1| RRF2 family protein [Fusobacterium sp. D11]
          Length = 143

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A +  +    RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L    ++I +  + +  ++   V +C      K+       CG T +  K  N
Sbjct: 61  GPTGGYKLAIKPEEIDLYMIYRILDDEEKVIDCNEMGEGKVHNCSEAGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A   +L++ S++  + N   I++
Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143


>gi|319780584|ref|YP_004140060.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166472|gb|ADV10010.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 156

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       ++ +A    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLARLPAGQLAFVNDVATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPAD+I +  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPADEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL Q S+  +
Sbjct: 121 IAEVLDQRSLAEM 133


>gi|228921441|ref|ZP_04084764.1| Transcriptional regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838214|gb|EEM83532.1| Transcriptional regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 133

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQHVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|228953101|ref|ZP_04115161.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806607|gb|EEM53166.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 133

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EKLRNQKIVDLAKK 128


>gi|258405006|ref|YP_003197748.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
 gi|257797233|gb|ACV68170.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
           retbaense DSM 5692]
          Length = 163

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ YGIR+++  A      P  +  +A+   IS  +L K+ + L ++G + +  G
Sbjct: 1   MRLSTRSRYGIRLMLDIAQQGQHGPVALRDVADRQDISLKYLEKLSRRLRESGFLMSRLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RPA +ITI +++++ E    + +C+   K  C  V  C   S+  +      
Sbjct: 61  AKGGYVLGRPAAEITIKELIESLEGHVGLVQCWLEEKA-CSRVDQCLAYSLWARINEVLA 119

Query: 120 DVLTQYSIECLV 131
             L   ++  ++
Sbjct: 120 RELNAITLADML 131


>gi|330683915|gb|EGG95683.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
           VCU121]
          Length = 140

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDNTTLQYLAEYKETDQNL 133


>gi|251794316|ref|YP_003009047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247541942|gb|ACS98960.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  +   +Y +  L+Y  I N+    I ++A    I E +L KI   L KAGIV +V G 
Sbjct: 1   MQYSVGVEYALHCLVYL-IPNESTIGIKELAFFQGIPETYLSKIFTKLTKAGIVSSVPGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDC-PLVGSCGLTS 109
           +GG +L R  D I+  DVV+A E    + +C                DC    GSC +  
Sbjct: 60  KGGFKLARVPDDISFWDVVEAVEGKKPIFQCQNIKDKGYLYRNRDCSDCAASTGSCSINL 119

Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
           V+ +A     + L    +  L      + ++  A
Sbjct: 120 VMLEAEETMQNYLRNKKLSWL---EEELDRVLPA 150


>gi|228939890|ref|ZP_04102467.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972780|ref|ZP_04133379.1| Transcriptional regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979364|ref|ZP_04139700.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228780368|gb|EEM28599.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228786995|gb|EEM34975.1| Transcriptional regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819821|gb|EEM65869.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940538|gb|AEA16434.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 133

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + +C    K        C +   +  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|258591782|emb|CBE68083.1| Transcriptional regulator, BadM/Rrf2 family [NC10 bacterium 'Dutch
           sediment']
          Length = 136

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +   A+H    P +I  IA+   +   +L +IL  L +AG +E+ RG  GG  L +   +
Sbjct: 1   MQDLALHYEQGPIQIEDIAKRQHLPARYLEQILLSLKRAGFLESKRGVSGGYYLAKHPRE 60

Query: 73  ITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           IT+  +++A E       C  S + + C     C L  +  +  +A   ++ + S+E L 
Sbjct: 61  ITVGAIIRAMEGPIVPIFCVGSGQREICIEEPQCCLRDIWAEVRDAVSHIVDRTSLEDLC 120

Query: 132 RNRSSIKK 139
               + ++
Sbjct: 121 GQIRARRE 128


>gi|21673360|ref|NP_661425.1| hypothetical protein CT0525 [Chlorobium tepidum TLS]
 gi|21646455|gb|AAM71767.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 136

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A+   +    + ++A     S++FL K +Q L KAGI  +V+G 
Sbjct: 3   QVSRKFEYGLHAVTYLAMKGPEQVVTVKELAAEIGFSQVFLAKAMQSLNKAGITRSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L RPA+QIT+ D+  A E    +  C +     C +  +C     +       +D
Sbjct: 63  KGGYTLARPAEQITVADIGVAIEGEPHLMRC-SQENCQCEIESNCTHKGYMLNLQKRIYD 121

Query: 121 VLTQYSIECLVRN 133
           +L + ++  L+  
Sbjct: 122 LLAETTVAVLLER 134


>gi|312884218|ref|ZP_07743927.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367991|gb|EFP95534.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 168

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ + P  ++ I+E   IS  +L ++   L KAG+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL   AD I I  ++ A +ES    +C      DC     C   ++     +   
Sbjct: 61  PGGGYRLGGEADTIAIGMIIAAVDESVDATKCQGRG--DCQGGARCLTHTLWHDLSSRIS 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D L   ++  L+++   ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137


>gi|21225697|ref|NP_631476.1| hypothetical protein SCO7427 [Streptomyces coelicolor A3(2)]
 gi|81858295|sp|Q9L132|NSRR_STRCO RecName: Full=HTH-type transcriptional repressor nsrR
 gi|7160161|emb|CAB76346.1| Conserved hypothetical protein SC6D11.23 [Streptomyces coelicolor
           A3(2)]
          Length = 148

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD  +R LM  A+    D P    ++AE   +      K +  L   G+VE  R
Sbjct: 1   MRLTKFTDLALRSLMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L     ++++  +V+  E    V +C       CPL G+C L   LR A  AF
Sbjct: 61  GRGGGLTLTDLGRRVSVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L   ++  LV   + 
Sbjct: 119 YAALDPLTVTDLVAAPTG 136


>gi|13473798|ref|NP_105366.1| hypothetical protein mll4516 [Mesorhizobium loti MAFF303099]
 gi|14024549|dbj|BAB51152.1| mll4516 [Mesorhizobium loti MAFF303099]
          Length = 156

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       ++ IA    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLAHLPAGQLAFVNDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL R A++I +  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARSAEEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL Q S+  +
Sbjct: 121 IAEVLDQRSLAEM 133


>gi|116253531|ref|YP_769369.1| Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258179|emb|CAK09280.1| putative Rrf2 family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 154

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++E  V +
Sbjct: 122 IAAILDNMTLEQFVAD 137


>gi|320008624|gb|ADW03474.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 150

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD  +RVLM   +    + P    ++A    +      K++  L   G+V+  R
Sbjct: 1   MRLTRFTDVALRVLMRLTVTTDGEDPPTTREVAATMEVPYTHAAKVVARLQHLGLVDARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC       CPL  +C L S LR+A  AF
Sbjct: 61  GRGGGLTLTTAGRSASIGTLVRELEGPGEVVEC--EGDTPCPLRSACRLRSALRRAEEAF 118

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L   ++  L  + + 
Sbjct: 119 YASLDPLTVSDLAASPTG 136


>gi|256158354|ref|ZP_05456254.1| RfF2 family protein [Brucella ceti M490/95/1]
 gi|256252715|ref|ZP_05458251.1| RfF2 family protein [Brucella ceti B1/94]
 gi|260166777|ref|ZP_05753588.1| RfF2 family protein [Brucella sp. F5/99]
 gi|261219794|ref|ZP_05934075.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261756154|ref|ZP_05999863.1| RRF2 family protein [Brucella sp. F5/99]
 gi|265996865|ref|ZP_06109422.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260918378|gb|EEX85031.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261736138|gb|EEY24134.1| RRF2 family protein [Brucella sp. F5/99]
 gi|262551162|gb|EEZ07323.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 143

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAF 118
           GG  L  PA +I I ++++A + +     C +      C         +  V+     A 
Sbjct: 62  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCNEAEWQVRHVMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
            +VL   ++  
Sbjct: 122 ANVLDHRTLAD 132


>gi|218531426|ref|YP_002422242.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Methylobacterium chloromethanicum CM4]
 gi|218523729|gb|ACK84314.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           chloromethanicum CM4]
          Length = 183

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           HL+  TDYG+R+LM+  +           +A+   IS   L KI Q LV+AG+VE  +GR
Sbjct: 21  HLSLHTDYGLRLLMHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGR 80

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL R A +I +  +V   E    VA+C    +  CPL+G C L      A  AFF 
Sbjct: 81  SGGVRLARDAREIRLGRLVADLEGVGTVADC---RRDPCPLLGRCRLKWAFDAAEQAFFL 137

Query: 121 VLTQYSIECLVRNR--SSIKKIFNA 143
            L + ++  +V     ++++ +F A
Sbjct: 138 ELDRLTLADVVAGPTAAALRSLFRA 162


>gi|297193473|ref|ZP_06910871.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718251|gb|EDY62159.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 147

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R +M  A +    P    ++AE   +    + K +  L   G++E  RG
Sbjct: 1   MRLTKFTDLALRAVMRLAVLEQGGPLTTREVAEEMNVPYAHMAKAIARLQHLGVLEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L     + ++  +V+  E    V  C       CPL G+C L   LR A  AF 
Sbjct: 61  RGGGLELTVLGRRASVGWLVRELEGEGEVVAC--EGDAPCPLRGACRLRRALRDAQEAFH 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 119 ATLDPLTVADLVASPAG 135


>gi|239637568|ref|ZP_04678540.1| Rrf2 family protein [Staphylococcus warneri L37603]
 gi|239596786|gb|EEQ79311.1| Rrf2 family protein [Staphylococcus warneri L37603]
          Length = 140

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL + +++ L   + + + +
Sbjct: 113 DVLDKTTLQYLAEYKETDQNL 133


>gi|168178952|ref|ZP_02613616.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
 gi|170756920|ref|YP_001783003.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
 gi|226950815|ref|YP_002805906.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|169122132|gb|ACA45968.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
 gi|182670202|gb|EDT82178.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
 gi|226841169|gb|ACO83835.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 133

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+   +    + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + I+ LD++ A E    + +C             C +  V+  A     
Sbjct: 61  VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSP------SECVIKKVMLSAEKKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  LV+ 
Sbjct: 115 EELRNQKISDLVKK 128


>gi|150016622|ref|YP_001308876.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903087|gb|ABR33920.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 142

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+   I +      +  I+E   ISE +L +I   L K GI+   +G
Sbjct: 1   MKISTKGRYGLRALIDICIFSVSEMVTVKSISERQGISERYLEQIFSSLRKGGIINAKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + + + TI D++   E    + +           +      ++     N   
Sbjct: 61  AQGGYFLAKSSREFTIGDILNVLEGDLLLIDIENDENEIENFMSE----NLWNVINNKII 116

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +     ++E LV +     K
Sbjct: 117 NFFNSITLEDLVNDYKKYNK 136


>gi|326384426|ref|ZP_08206106.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
 gi|326196771|gb|EGD53965.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
          Length = 176

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD G+RV+M  A   +  +   ++A+   +S   + K++  L + G+V + RGR
Sbjct: 1   MQLTRFTDIGLRVVMALAADPEASHTSRRLADDLDLSYTHVAKVVSRLAELGVVHSSRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ +     +  +  + +  E    V +C       CPL  +C L   L  A  AF+D
Sbjct: 61  SGGLGITELGPRAGVGWLARHLEGDGPVVDC--EGPTPCPLRSACRLRGALAAAQEAFYD 118

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L + +++ L+ + +  + +
Sbjct: 119 SLDRLTVQDLIADPTGARLL 138


>gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 151

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY  R L+  A+H  D P  ++++A    + + +L +IL  L  AG+V + RG
Sbjct: 1   MRVSTRGDYAARALLSLALHPSDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG  L R A++IT+  ++ A +    V +    H+   C   G C L  V  +  +  
Sbjct: 61  AGGGYTLGRSAEEITLAQIIAAVDGPITVGDFKEPHEDGACDHEGQCALLEVWAEVGHHM 120

Query: 119 FDVLTQYSIECLVRNRSSIK-KIFNA 143
            D L  Y++  +VR    ++  +  A
Sbjct: 121 ADHLRSYTLAEMVRRARGLRGDVLGA 146


>gi|333023880|ref|ZP_08451944.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332743732|gb|EGJ74173.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 151

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L   A H ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALAELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +         A   +  P   + GL ++ R       D
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L + S+  L R   + +
Sbjct: 120 LLGEVSLAALAREAPTTR 137


>gi|325266572|ref|ZP_08133249.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
 gi|324982015|gb|EGC17650.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
          Length = 157

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT++TDY +RVL+Y AI+N+    I++IA+   IS+  L K++  LVK G + +VRG+
Sbjct: 11  MHLTQQTDYALRVLIYTAINNEGLVNIAEIAKTYDISKSHLMKVVTALVKGGFLHSVRGK 70

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +  +QI + DVV+ TE    +AECF     +C +   C L ++L   L  F  
Sbjct: 71  GGGLRLGKEPEQIRVGDVVRLTE-PMVIAECFG-ENNECIISPHCRLANILNSGLKLFLM 128

Query: 121 VLTQYSIECLVRNRSSIKKIF 141
            L  Y++  L+   +  +KI 
Sbjct: 129 HLDNYTLADLL--NAGTQKIL 147


>gi|157149110|ref|YP_001456429.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
 gi|157086315|gb|ABV15993.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
          Length = 167

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM             + +IA+   +   +L KI   L KAG+V ++ G+ 
Sbjct: 5   SSGVEYGIHSLMCMVDSKGDARDMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L RPA+ IT+LDVV A +    + EC         F          G CG+ SV+ 
Sbjct: 65  GGFQLARPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPAWACEGICGVRSVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L Q++I  L R 
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145


>gi|300113345|ref|YP_003759920.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299539282|gb|ADJ27599.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 158

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDY I ++   A+     +  + ++    +    + KIL+ L +AG++ + RG +
Sbjct: 3   RMSKMTDYAIVLMTRLAMDPKGQHAATDLSAQVEMPLPTVSKILKQLARAGLLVSSRGAQ 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +  + I++ +++   E    + EC ++   +C     C   +   +   A +  
Sbjct: 63  GGYSLGKSPEAISVAEIITILEGPIGLTECVSTPG-ECGQEAHCATRAHWEQINQAVYGA 121

Query: 122 LTQYSIECLVR 132
           L +  +  +V+
Sbjct: 122 LNEIKLSDMVQ 132


>gi|325919608|ref|ZP_08181620.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
           ATCC 19865]
 gi|325549944|gb|EGD20786.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
           ATCC 19865]
          Length = 152

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARGDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A +IT++++V+A E    + EC   H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASEITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|23015106|ref|ZP_00054893.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 128

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TD+ IR+L+Y + H D    + ++AE   IS   L KI++ L   G ++TVRG+
Sbjct: 1   MKITQFTDFSIRLLIYLSRHRDRVVTVREVAEYYGISAEHLKKIVRSLADLGHLQTVRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R    I I  + +  +E+  +  C       CP+   C L  ++  AL AF  
Sbjct: 61  HGGLRLAREPRDIDIGRLFRQ-QENLALLPCH-EPCDGCPI-DDCRLRGLVDNALAAFLA 117

Query: 121 VLTQYSIECLV 131
           V    S+  ++
Sbjct: 118 VFDGKSLADVI 128


>gi|291287793|ref|YP_003504609.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884953|gb|ADD68653.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 134

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DY IR L++ A        + S++A  C I + FL KILQ L K+ I+ + RG
Sbjct: 1   MKVTRASDYAIRALIHMAHKPLGTTFMRSELAAECEIPDSFLGKILQNLAKSEILSSERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG ++ +   +IT+ D++ A E    + +C       C LV SC   ++     +   
Sbjct: 61  KKGGFKVAKNPAEITVYDIISAIEGDIALNKCIFDEDF-CSLVHSCTAHNMWSDIQDNLV 119

Query: 120 DVLTQYSIECLVRN 133
           ++L  YS+  L   
Sbjct: 120 EMLKSYSLAKLTEK 133


>gi|115372474|ref|ZP_01459782.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370436|gb|EAU69363.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 158

 Score =  133 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDYG+ +L   A          ++AE   +    + K+L+ L  AG++ + RG  
Sbjct: 3   RMSKMTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAM 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAFF 119
           GG  L RPA  I +  V+ A E    +  C      +  C L   C +    R    A  
Sbjct: 63  GGYGLARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQ 122

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
           + L + ++  L      ++++  
Sbjct: 123 EALGRLTLADLCAPELRVERLVG 145


>gi|224823961|ref|ZP_03697069.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
 gi|224603380|gb|EEG09555.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
           2002]
          Length = 156

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++ TDYG  ++ + A    +    +++A A  ++     KIL+ L +  ++ ++RG  
Sbjct: 3   RLSRLTDYGTVIMAHMAREPGHVYSAAELAGAVGVALPTASKILKTLARKALLHSLRGAH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP  +I+I  V+ A E  F V EC  +  + CP   +C L    ++   A    
Sbjct: 63  GGYLLARPPREISIAQVIDALEGPFGVTECSVAAGL-CPQENACALRRHWQRIDRALRQT 121

Query: 122 LTQYSIECLVR 132
           L   ++E + +
Sbjct: 122 LDGLTLEDMTQ 132


>gi|16126861|ref|NP_421425.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|221235644|ref|YP_002518081.1| Rrf2 family protein [Caulobacter crescentus NA1000]
 gi|13424201|gb|AAK24593.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|220964817|gb|ACL96173.1| Rrf2 family protein [Caulobacter crescentus NA1000]
          Length = 143

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A   D      ++AE       FL  IL  L + G+V + RG+ G
Sbjct: 2   LSQKARYALRAMIELA-RADTQVTAGELAERADAPRKFLEAILLSLSREGLVISRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L R AD I+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYVLARDADAISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120

Query: 119 FDVLTQYSIEC 129
             VL  YS+  
Sbjct: 121 AAVLEGYSLAD 131


>gi|257066428|ref|YP_003152684.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii
           DSM 20548]
 gi|256798308|gb|ACV28963.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii
           DSM 20548]
          Length = 133

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A + D     +S++++   +SE +L ++++ L   G++ + RG
Sbjct: 1   MKLSTRGRYGLRAMCYLASNKDRGYISVSEMSDKLNLSENYLEQLIRLLKNDGLITSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG ++ R  D+I++ +V++  E +  +++C +     C     C    V  +      
Sbjct: 61  PKGGYKITRDLDEISVGEVLRVLEGNITMSDCVSGDHF-CD--DKCDAYFVFDRIDKVIN 117

Query: 120 DVLTQYSIECLVRNR 134
           + +   S++ ++   
Sbjct: 118 EAVDSISLKNMINQE 132


>gi|119476390|ref|ZP_01616741.1| iron-sulfur cluster assembly transcription factor IscR [marine
           gamma proteobacterium HTCC2143]
 gi|119450254|gb|EAW31489.1| iron-sulfur cluster assembly transcription factor IscR [marine
           gamma proteobacterium HTCC2143]
          Length = 174

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  AIH    P  ++ I+    IS  +L ++   L +  +V +VRG
Sbjct: 17  MRLTTKGRYAVTAMLDLAIHVGAGPISLADISSRQGISLSYLEQLFAKLRRGELVSSVRG 76

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I +  +V A  E      C            +C    +         
Sbjct: 77  PGGGYLLSRGGADIFVSQIVDAVNEKIDATGCGGGGDCQ--DGETCLTHHLWCDLSEQIH 134

Query: 120 DVLTQYSIECLVRNRS 135
             L   S+  LV  R 
Sbjct: 135 SFLGGISLASLVEKRE 150


>gi|34763186|ref|ZP_00144152.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237742213|ref|ZP_04572694.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
 gi|256845486|ref|ZP_05550944.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_36A2]
 gi|294785208|ref|ZP_06750496.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
 gi|27887155|gb|EAA24260.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429861|gb|EEO40073.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
 gi|256719045|gb|EEU32600.1| iron-sulfur cluster assembly transcription factor IscR
           [Fusobacterium sp. 3_1_36A2]
 gi|294486922|gb|EFG34284.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
          Length = 141

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A +  +    RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + +  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S++  + N   I
Sbjct: 121 AMTKILSETSLQDFINNGKRI 141


>gi|320105376|ref|YP_004180966.1| BadM/Rrf2 family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319923897|gb|ADV80972.1| transcriptional regulator, BadM/Rrf2 family [Terriglobus saanensis
           SP1PR4]
          Length = 164

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIH-----------NDYPNRISQIAEACCISELFLFKILQPLVK 50
            LTK+ DYG+  L Y A               +      IAEA  I    L KILQ L +
Sbjct: 3   RLTKKADYGLMALKYLAEQAVAAAEHPESVPAHAQSAKDIAEAYHIPPQLLAKILQTLAR 62

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
           AGI+ +  G  GG  L R A +IT  +V++A +   F+  C   H   C L G C +   
Sbjct: 63  AGILVSHAGTNGGYSLARSATEITAFEVIRAIDGPLFITSCITIHGT-CDLAGHCTIKEP 121

Query: 111 LRKALNAFFDVLTQYSIECLVR 132
           LRK  ++  D+L+   I  LV 
Sbjct: 122 LRKVNDSIKDLLSGIRISDLVD 143


>gi|299139059|ref|ZP_07032235.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX8]
 gi|298598739|gb|EFI54901.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX8]
          Length = 152

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LTK+ DYG+  L Y A  + +       IAEA  I    L KILQ L K+G++ +  G 
Sbjct: 3   RLTKKADYGLMALKYLAEQSTNGAQSAKDIAEAYHIPPQLLAKILQTLAKSGLLVSHAGT 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R A  I+  +V++A +   F+  C   H   C L G+C +   LRK  ++  +
Sbjct: 63  NGGYALARSAHDISAFEVIRAIDGPLFITSCITIHGT-CDLHGTCTIKEPLRKVNDSIKE 121

Query: 121 VLTQYSIECLVR 132
           +L+   +  L+ 
Sbjct: 122 LLSGIRVSDLIE 133


>gi|217967934|ref|YP_002353440.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
           DSM 6724]
 gi|217337033|gb|ACK42826.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum
           DSM 6724]
          Length = 144

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++ + +YG+R +++   +       +SQI++   IS  FL +++  L +A +VE+ +G 
Sbjct: 3   RVSAKLEYGLRAMIFLGKNYPHEKLTLSQISQEENISREFLAQLMSELRRANLVESYKGI 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +P  +IT+ ++ +A E    + +C       C    SC   ++         D
Sbjct: 63  TGGYTLTKPPHEITLKEIFEALEGPIQIIDCIHIDN-KCNKERSCYSKNIWIFIEKKIID 121

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
           +L   ++E L+      ++I  
Sbjct: 122 LLGSLTLEDLINGTIRKEEILT 143


>gi|303327401|ref|ZP_07357842.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862341|gb|EFL85274.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 148

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+  A    D   ++ Q+A    IS  +L +I++ L   GI+  VRG
Sbjct: 3   MRFSTRTRYGLRFLLRLAAQPKDSLLQLGQVAREENISSGYLEQIVRALKPLGILRAVRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +   +I + DV    E       C    +  C     C      ++      
Sbjct: 63  SGGGYALAKDPSEINMEDVFLHLEGEIAPVRCLTKGRC-CQREQQCSTRGFWKELDGHIR 121

Query: 120 DVLTQYSIECLVRNRS 135
             L Q+++  ++ +  
Sbjct: 122 GFLQQHTLREIIESEK 137


>gi|296392911|ref|YP_003657795.1| BadM/Rrf2 family transcriptional regulator [Segniliparus rotundus
           DSM 44985]
 gi|296180058|gb|ADG96964.1| transcriptional regulator, BadM/Rrf2 family [Segniliparus rotundus
           DSM 44985]
          Length = 151

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+RV ++  A  +      + +AE   +      K++  L   G+VE+ RG
Sbjct: 1   MQLTKFTDLGLRVTMLLAAAPSGRQLSTAHVAEQMRVPYTHAAKVVARLAGLGVVESARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL   A   +I  + +  E    V EC       CPL   C L   LR+A  AFF
Sbjct: 61  RAGGLRLAESASSRSIGWIARRLEGDGEVVEC--EGANPCPLREGCRLRGALRQAQEAFF 118

Query: 120 DVLTQYSIECLVRNRSS 136
            VL  +++  ++R  + 
Sbjct: 119 HVLDGWTVAEMIRTPTE 135


>gi|254282474|ref|ZP_04957442.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR51-B]
 gi|219678677|gb|EED35026.1| iron-sulfur cluster assembly transcription factor IscR [gamma
           proteobacterium NOR51-B]
          Length = 150

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+ N   P  ++ I+E   IS  +L ++   L ++G+V++VRG  GG  L R A +
Sbjct: 1   MLDLALRNGQGPTALAGISERQDISLSYLEQLFSQLRRSGLVKSVRGPGGGYHLGRDAGE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++  V++A  ES     C    K DC    +C    +     +   D L   S+E LV 
Sbjct: 61  ISVAAVIQAVNESTDTTRC--RGKGDCQKGDTCLTHHLWMNLSDQIHDFLEAISLEDLVE 118

Query: 133 NRS 135
              
Sbjct: 119 TEE 121


>gi|319782762|ref|YP_004142238.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168650|gb|ADV12188.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 149

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ + +       ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSGLPAGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|154502552|ref|ZP_02039612.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
 gi|153796744|gb|EDN79164.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
          Length = 146

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG+R L+   IH N+ P  + Q+A    IS  +L ++   L KAGIV +V+G
Sbjct: 1   MKVSTRGRYGLRALVDMTIHSNNAPVSLVQVANRQKISLNYLEQVFGTLRKAGIVVSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R A+ IT+ +V++A E +F + +     + D        L  V  +      
Sbjct: 61  AGGGYKLARDAESITVKEVLEALEGTFSIIDRIPGEEQDAVQEAIEKL--VWSRIDETVN 118

Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144
             L Q +++ L    R  +++  NAG
Sbjct: 119 TFLEQKTLKMLADEYREKLEQ--NAG 142


>gi|28198602|ref|NP_778916.1| hypothetical protein PD0694 [Xylella fastidiosa Temecula1]
 gi|71897700|ref|ZP_00679945.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|182681285|ref|YP_001829445.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa M23]
 gi|28056686|gb|AAO28565.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|71732603|gb|EAO34656.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
 gi|182631395|gb|ACB92171.1| transcriptional regulator, BadM/Rrf2 family [Xylella fastidiosa
           M23]
 gi|307579736|gb|ADN63705.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 153

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A H       +++AE   +    + KIL+PL +AG+V   RG  
Sbjct: 3   RVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVAGRRGAY 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R   +IT++ +V+A E    + EC   H   C +   CG+ S  +         
Sbjct: 63  GGYRLARTPGEITLIQIVEAIEGPLAITECSQDHN-QCSITHQCGIRSNWQLINTLIAQA 121

Query: 122 LTQYSIECLVR 132
           L   ++  ++ 
Sbjct: 122 LRSITLAQMLA 132


>gi|75763854|ref|ZP_00743502.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218897792|ref|YP_002446203.1| rrf2 family protein [Bacillus cereus G9842]
 gi|228901306|ref|ZP_04065501.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
 gi|228965709|ref|ZP_04126789.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74488661|gb|EAO52229.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543991|gb|ACK96385.1| rrf2 family protein [Bacillus cereus G9842]
 gi|228793968|gb|EEM41491.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858335|gb|EEN02800.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
          Length = 133

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVYQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + +C    K        C +   +  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|220904115|ref|YP_002479427.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868414|gb|ACL48749.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 138

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +T Y  R+L+Y A +  + P   S +A    IS  F+ +IL+ L  AGI  +VRG
Sbjct: 1   MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  +++T   +V   E    ++ C       C    +C +        +   
Sbjct: 61  AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCL-EKPGHCSRFDACEVRKAWESLQSTLD 119

Query: 120 DVLTQYSIECLVRN 133
            V    ++  L+ +
Sbjct: 120 GVFESITLRDLMHD 133


>gi|94263797|ref|ZP_01287603.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
 gi|93455808|gb|EAT05975.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
          Length = 131

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R L Y     +    + +IA    I   FL KI + L  AG+V   RG 
Sbjct: 1   MQITRETDYALRCLYYLVRRPEQVCMVDEIAAEMEIPRSFLAKIARKLAAAGLVVAHRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R  + I+I +V+ A E    +  C    K  C     C L  V          
Sbjct: 61  GGGFMLIRKPETISIHEVICAIEGEVALNICTGEEK-RCQRSDHCPLHPVWVNLRRDVEA 119

Query: 121 VLTQYSIECLV 131
           +L   +   L+
Sbjct: 120 LLQARNFAELL 130


>gi|255533630|ref|YP_003094002.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
           2366]
 gi|255346614|gb|ACU05940.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
           2366]
          Length = 145

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    + + P  +I ++AE   I   FL +IL  +  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVALGKNRENPPMQIVRLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  ++I + D+++ T+    +  C    F     +C    +CG+        +A
Sbjct: 62  GGYSLNKEPNEIYLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL Q +I  ++   + 
Sbjct: 122 TLKVLAQTTIADVIARETD 140


>gi|228959004|ref|ZP_04120705.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229046468|ref|ZP_04192123.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|229145347|ref|ZP_04273736.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|229190868|ref|ZP_04317859.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|296503312|ref|YP_003665012.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|228592536|gb|EEK50364.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228638186|gb|EEK94627.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|228724830|gb|EEL76132.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|228800665|gb|EEM47581.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|296324364|gb|ADH07292.1| RRF2 family protein [Bacillus thuringiensis BMB171]
          Length = 133

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|282849798|ref|ZP_06259182.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|282580735|gb|EFB86134.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
          Length = 149

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + VL+  A    D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1   MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAAKLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL +   + TI++++ ATEES  +          D  +              N  
Sbjct: 61  KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118

Query: 119 FDVLTQYSIECLVR 132
            D L   +++ ++ 
Sbjct: 119 HDYLENVTLQDVID 132


>gi|302039295|ref|YP_003799617.1| putative transcription factor IscR [Candidatus Nitrospira defluvii]
 gi|300607359|emb|CBK43692.1| putative Transcription factor IscR [Candidatus Nitrospira defluvii]
          Length = 159

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            L+K+ DYG+  L + A +              +IAE   I    L K+LQ L K+GI+E
Sbjct: 3   KLSKKADYGLMALQHIASNQYGDVAQARVVNTKEIAEEYHIPVELLAKVLQTLSKSGIIE 62

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKA 114
           +  G +GG  L +   +ITI  V+++ E    + +C      D C     C + + L K 
Sbjct: 63  SHNGPKGGYLLGKNPREITIAHVLESLEGPLGIMDCSHEKDGDACMQREHCNIRTPLLKI 122

Query: 115 LNAFFDVLTQYSIECLV 131
            ++ + +L   +++ ++
Sbjct: 123 QSSIYQLLNNMTLQDMM 139


>gi|283835886|ref|ZP_06355627.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
           ATCC 29220]
 gi|291068057|gb|EFE06166.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
           ATCC 29220]
          Length = 167

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM             + +IAE   +   +L KI   L KAG+V ++ G+ 
Sbjct: 5   SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L +PA+ IT+LDVV A +    + EC         F     +    G CG+ SV+ 
Sbjct: 65  GGFQLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVRSVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L Q++I  L R 
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145


>gi|19704551|ref|NP_604113.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328430|ref|ZP_06870956.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|19714837|gb|AAL95412.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154504|gb|EFG95296.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 143

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A +  +    RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + +  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCSEEGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A   +L++ S++  + N   I++
Sbjct: 121 AMTKILSETSLQDFINNGKRIQE 143


>gi|298290810|ref|YP_003692749.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927321|gb|ADH88130.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 149

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT +  YG++ ++Y A I         +IA A  I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTNKGKYGLKAMLYLARIEPGSSAMGQEIATANNIPKKFLDAILLELRNAGMLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  +++  +       C +        DC  + +C +   + K  +A
Sbjct: 62  GGYALAKTPREIRIGHIIRTLDGPLAPISCASKSAYVPCQDCEDLATCSVRITMSKVRDA 121

Query: 118 FFDVLTQYSIECLV 131
             ++L   S++ ++
Sbjct: 122 MSEILDGMSLQDMI 135


>gi|257065352|ref|YP_003145024.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
 gi|256793005|gb|ACV23675.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
          Length = 133

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R++   A +    P  +  +AE   IS  +L ++ +PLV + ++ + RG
Sbjct: 1   MLVSTKGRYAMRLMTDVARYQCLGPVPLRDVAERENISVKYLEQLARPLVHSDLLHSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL RPA +I   D+++A E +     C    + DCP    C   +          
Sbjct: 61  KGGGYRLTRPASEIKAGDILRAAEGTTIPVACNGLLE-DCPRTTECASINFWVGLDRVIE 119

Query: 120 DVLTQYSIECLV 131
           D +   ++  ++
Sbjct: 120 DYVDAVTLADII 131


>gi|237740315|ref|ZP_04570796.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
 gi|262068259|ref|ZP_06027871.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
 gi|229422332|gb|EEO37379.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
 gi|291377997|gb|EFE85515.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 141

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKAL 115
           G  GG +L     QI +  + K  ++   V +C  + +    +C    +CG T +  +  
Sbjct: 61  GPTGGYKLTLKPSQINLYTIYKILDDEERVIDCNENAEGKAHNC-NEEACGETCIWSRLD 119

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
           NA   +L++ S+E  ++N   I
Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141


>gi|330466710|ref|YP_004404453.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809681|gb|AEB43853.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 146

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +R+ M     +     + ++A+   +    + K++Q L   G++ T+RGR
Sbjct: 1   MKLNRSTDMAMRIAM-LTAASGRRTTVDELAQRLALPRNHVAKVVQRLQHLGVLVTIRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV         T+  VV+A E    V +C       CPL  +C L   LR+A  AF  
Sbjct: 60  SGGVAFAADGATYTVGQVVRAFEGDGEVVDC---EAPACPLRAACRLRIELRRAQEAFLA 116

Query: 121 VLTQYSIECLVRNRSS 136
           VL + S+  LV + + 
Sbjct: 117 VLDRVSLADLVDSPTG 132


>gi|313497210|gb|ADR58576.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           BIRD-1]
          Length = 153

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 11  IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+H  + P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R 
Sbjct: 1   MTAMLDLALHAKNGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRG 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            + I +  V+ A  ES     C      DC    +C    +         + L+  S+  
Sbjct: 61  METIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLAD 118

Query: 130 LVRNRS 135
           LV+ R 
Sbjct: 119 LVKRRD 124


>gi|190893190|ref|YP_001979732.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190698469|gb|ACE92554.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 154

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++E  V 
Sbjct: 122 IAAILDNMTLEQFVA 136


>gi|332716226|ref|YP_004443692.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062911|gb|ADY66601.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 149

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       +++IA    I + FL  IL  L  +GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSKMPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
              +L   ++   V       +   AG
Sbjct: 122 IATILDNMTLAQFVAKGGQDAQFIPAG 148


>gi|86741718|ref|YP_482118.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86568580|gb|ABD12389.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 143

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLT+ TD  +R LM  A   D    +  +++A  +    + KI+Q L +  +V TVRGR
Sbjct: 1   MHLTQSTDLALRALMLTATREDR-LTVRDLSKALDVPLTHMAKIVQRLQRLDLVVTVRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L   A Q+T+  +V+A E +     C       CPL  +C L  +LR+A   F  
Sbjct: 60  TGGVLLAPGATQVTVGHIVRALEGTDEFVSC---DGPPCPLRCACRLRPLLRRAQENFLV 116

Query: 121 VLTQYSIECLVRNRSS 136
            L + ++  L    + 
Sbjct: 117 TLDEVTLAELTDEPAG 132


>gi|296131265|ref|YP_003638515.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena
           DSM 20109]
 gi|296023080|gb|ADG76316.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena
           DSM 20109]
          Length = 152

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DY +R     A            +A    I   FL +I+  L + G+V +VRG
Sbjct: 1   MRVSAKADYAVRACAELASRPGGESVPSEVLAAGQDIPTSFLERIMGDLRRGGVVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RPAD+IT+ DVV+A +             +      + GL  V      +  
Sbjct: 61  RSGGYLLARPADEITVADVVRAVDGPLVTVRDVRPPGLTYEGSAA-GLLDVWVALRASVR 119

Query: 120 DVLTQYSIECLVRN 133
           DVL   +++ LV  
Sbjct: 120 DVLDVVTLKDLVDR 133


>gi|302536831|ref|ZP_07289173.1| transcriptional regulator [Streptomyces sp. C]
 gi|302445726|gb|EFL17542.1| transcriptional regulator [Streptomyces sp. C]
          Length = 152

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ TD  +RVLM  A+ +       ++A    +      K++  L   G+VE  RGR
Sbjct: 4   MRLTRFTDLALRVLMRLAVEDTDLPTTREVAATMEVPYTHTAKVVARLQHLGLVEARRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  VV+  E +  V +C       CPL G+C L   LR+A  AFF 
Sbjct: 64  GGGLALTAAGRTASVGGVVRELEGAGDVVDC--DGASPCPLRGACVLRGALRRAQEAFFA 121

Query: 121 VLTQYSIECLVRNRSS 136
            L   ++  LV   + 
Sbjct: 122 ALDPLTVNELVAAPTG 137


>gi|328544668|ref|YP_004304777.1| Rhizobial iron transcriptional regulator protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414410|gb|ADZ71473.1| Rhizobial iron transcriptional regulator protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 146

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+RTD  +R+L++ A+H      + +I +        +   +Q L + G + +  GR
Sbjct: 1   MRFTERTDIAVRLLLFLALHKGAKLSVDEIVDRYLGHRSQVVAAIQDLRRGGYIGSSPGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GGV L R A +IT+ ++V+  E  F +  CF    K  C +   C     L +AL +FF
Sbjct: 61  SGGVWLVRSAHEITLAEIVRMFETDFHLTRCFKDGVKARCLIYDVCVFKQALERALGSFF 120

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
            VL + +I  L+ +   + ++   G
Sbjct: 121 AVLEETTIADLIEDEGRMLQVMEMG 145


>gi|302388919|ref|YP_003824740.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
 gi|302199547|gb|ADL07117.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
           oceani DSM 16646]
          Length = 135

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R +++ + +          IAE   I   F+ KIL+ L +AGIV++ RG
Sbjct: 1   MKLNQATDYAFRAVLHLSKLPPGEVVEARVIAEQEHIPMRFMLKILRLLTQAGIVKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +    IT+ DVV+A E   ++  C  A  + +      C +   L       
Sbjct: 61  VGGGYALAKMPRDITMRDVVEAVEGPVYINRCLIAPEECNKRSTAKCSIHKALFSIQQTI 120

Query: 119 FDVLTQYSIECLVRN 133
            D L +Y+ E L +N
Sbjct: 121 NDKLEEYNFEILSKN 135


>gi|218780199|ref|YP_002431517.1| BadM/Rrf2 family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761583|gb|ACL04049.1| transcriptional regulator, BadM/Rrf2 family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 144

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +YG+R ++Y A        +  ++A    I + FL KI Q L  AGIVE ++G
Sbjct: 1   MRLTRAGEYGVRCILYLAGCPRGEVVKKKEVALNMDIPDQFLSKIAQQLAVAGIVEIIQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG+RL R A  +++LDVV+A     F+ +C +     C    +C +  V  KA     
Sbjct: 61  SRGGLRLARDAKDVSLLDVVEAITGEIFLNDCVSDPN-SCRNQPTCSVHRVWSKARMQLR 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L   +   LV     ++K
Sbjct: 120 ETLGLATFAGLVEEGHCLQK 139


>gi|332188678|ref|ZP_08390393.1| rrf2 family protein [Sphingomonas sp. S17]
 gi|332011295|gb|EGI53385.1| rrf2 family protein [Sphingomonas sp. S17]
          Length = 143

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT+R+ Y +R +++ A       P  +++IA    +   FL  IL  L  A ++++ RG+
Sbjct: 2   LTQRSRYALRAMLFLAEMPPAGPPTSMTRIATEANVPRKFLELILADLKGAQLLDSQRGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
            GG RL R A  I++ D+++  E    +  C +        DC     C +   + +  +
Sbjct: 62  MGGYRLARAAHLISLGDIIRTIEGPLALVPCVSRTAYRPCNDCKSEADCAIRHAMMRVRD 121

Query: 117 AFFDVLTQYSIEC 129
               +L   S+  
Sbjct: 122 ETARILDGTSLAD 134


>gi|251772796|gb|EES53357.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 157

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LTK+ DY +  L   A   +     +  IA    I    L K++Q L KAG++++    
Sbjct: 3   KLTKKVDYALLALNLMAQAREGETSNVRDIAGIYRIPPEILAKVMQKLSKAGLIQSHNAP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L  PA++I++L V+ A E    +  C      DC     C + S L +  N    
Sbjct: 63  KGGYSLKIPAEKISVLKVLTAVEGPVGIVSCSDGSDKDCQQRDQCDIRSPLERLQNNILW 122

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L   SI  L +  + +K + + 
Sbjct: 123 FLEALSIRELGQEPTVMKGVTDG 145


>gi|167647686|ref|YP_001685349.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167350116|gb|ABZ72851.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 146

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++  Y +R ++  A  +       ++A        FL  IL  L + G+V + RG+ G
Sbjct: 2   LSQKARYALRAMIELARESGQ-VTAGELAVRADAPRKFLEAILLTLARQGLVTSRRGKFG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L R  DQI+  ++++  +    +  C +        DC  + +C L   L +A +A 
Sbjct: 61  GYLLGRGPDQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120

Query: 119 FDVLTQYSIECLVR 132
             VL  YS+   V 
Sbjct: 121 AAVLEGYSLSDAVN 134


>gi|30262741|ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47528060|ref|YP_019409.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185589|ref|YP_028841.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|118478131|ref|YP_895282.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|165868776|ref|ZP_02213436.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167632402|ref|ZP_02390729.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167637771|ref|ZP_02396050.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170685225|ref|ZP_02876449.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170704801|ref|ZP_02895267.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177649735|ref|ZP_02932737.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190565557|ref|ZP_03018477.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196043481|ref|ZP_03110719.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225864745|ref|YP_002750123.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227814419|ref|YP_002814428.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229604122|ref|YP_002867050.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254685333|ref|ZP_05149193.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722741|ref|ZP_05184529.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254737789|ref|ZP_05195492.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743037|ref|ZP_05200722.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254752103|ref|ZP_05204140.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254760624|ref|ZP_05212648.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|30257373|gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47503208|gb|AAT31884.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179516|gb|AAT54892.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|118417356|gb|ABK85775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|164715502|gb|EDR21019.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167514320|gb|EDR89687.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167532700|gb|EDR95336.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170130602|gb|EDS99463.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170670585|gb|EDT21324.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172084809|gb|EDT69867.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190563584|gb|EDV17549.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196025790|gb|EDX64459.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225787545|gb|ACO27762.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227004844|gb|ACP14587.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229268530|gb|ACQ50167.1| rrf2 family protein [Bacillus anthracis str. A0248]
          Length = 133

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    + I+ LD++ A E    + EC    K        C +   +  A     
Sbjct: 61  PKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLINEAMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAKK 128


>gi|294782591|ref|ZP_06747917.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481232|gb|EFG29007.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 141

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A ++      RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKAL 115
           G  GG +L    +QI +  + K  ++   V +C  + +    +C    +CG T +  +  
Sbjct: 61  GPTGGYKLTLKPNQINLYTIYKILDDEERVIDCNENAEGKAHNC-NEEACGETCIWSRLD 119

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
           NA   +L++ S+E  ++N   I
Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141


>gi|206889263|ref|YP_002249119.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741201|gb|ACI20258.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 164

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 1/135 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T+ TDY IR ++Y +   DY  R  +I++   I + FL KIL+ L K G+V+  RG  
Sbjct: 31  QITRETDYAIRTVLYLSGKKDYSARAEEISQQMQIPKSFLRKILKQLEKVGLVQLKRGVS 90

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG++L R   +IT+ DV+ A E++  +  C  + KI C L+  C +  V  K        
Sbjct: 91  GGIKLLREPVEITLFDVIVAMEKAVALNRCVINDKI-CGLISHCPVHPVWFKVRERLIQA 149

Query: 122 LTQYSIECLVRNRSS 136
           L +   + L +  +S
Sbjct: 150 LQEIKFQELAKGAAS 164


>gi|328955720|ref|YP_004373053.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
 gi|328456044|gb|AEB07238.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
          Length = 150

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +R+++Y A          + +IA    IS+ +L ++++PL++AG++++VR
Sbjct: 1   MLISSKGRYALRLMIYIAAFGGDQGRVALREIAACEDISQKYLEQLVRPLMRAGLLKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+RGG  L +PA+++   D+++  E +     C       C     C             
Sbjct: 61  GKRGGYILGKPAEEVRAGDILRVAEGTTAPVACEGLEGA-CERADLCSTVRFWTGLDAVI 119

Query: 119 FDVLTQYSIECLVRNRS 135
              +   ++  L R   
Sbjct: 120 ESYVDGVTLAELARAPD 136


>gi|119505399|ref|ZP_01627473.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
 gi|119458854|gb|EAW39955.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
          Length = 138

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  AI+ +  P  ++ I+    IS  +L ++   L +  +V +VRG  GG RL R    
Sbjct: 1   MLDLAINGEEKPVSLADISGRQEISLSYLEQLFAKLRREALVTSVRGPGGGYRLARDRAT 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           + + +++ A +ES  V  C  + K +C     C    + +   +     L+  S+  LV 
Sbjct: 61  LFVAEIIDAVDESVDVTNC--NGKGNCHHGEVCLTHDLWQDLSDRIHSFLSGISLADLVD 118

Query: 133 NRSSIKKI 140
           NR+   ++
Sbjct: 119 NRAGKARL 126


>gi|260467181|ref|ZP_05813358.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259029034|gb|EEW30333.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 149

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ A +       +  IA    I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLARMPAGQLAFVGDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPAD+I I  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPADEIEIGHVVRVLDGPLAPIPCASRTQYQRCEDC-NEATCQVRHLMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL Q S+  +
Sbjct: 121 IAEVLDQRSLAEM 133


>gi|167758028|ref|ZP_02430155.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
 gi|167663925|gb|EDS08055.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
          Length = 166

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A++    P  ++ +A    IS  +L ++   L KAG+V +++G
Sbjct: 20  MKISTKGRYGLRALVDLAVYSQGEPTALAMVAARQKISLNYLEQVFGQLRKAGLVRSIKG 79

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L +PA  IT+ ++++  E  F +  E      +D   +    L  V  +     
Sbjct: 80  PSGGYLLAKPAKDITVKEILEVLEGPFSIVGEDLDRSSLDAMQLAIKSL--VWDEIDARI 137

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            + + + ++E LV    S + 
Sbjct: 138 NEFMEKRTLEHLVNEYRSYQD 158


>gi|299822759|ref|ZP_07054645.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816288|gb|EFI83526.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 150

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y A    +    + ++AE   +S  +L K+L  LVKAG++E+V G
Sbjct: 8   MKYSKATNYALHTMVYLAHTTLENTLGVKELAERFQVSSTYLSKVLTTLVKAGLIESVSG 67

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R ++ IT LDVV+A E +  +  C   +         C + + +++A     
Sbjct: 68  VKGGYKLARSSETITFLDVVQAVEGANPLFVC-GMNATPAHNEKICLIENAMKEAEQKME 126

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L   +I  + R   S+K+
Sbjct: 127 ADLATKTIAGVARQMKSLKE 146


>gi|92113358|ref|YP_573286.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796448|gb|ABE58587.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
           salexigens DSM 3043]
          Length = 155

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY   V+   A H +  +  +++A+A  +    + K L+ LVKAG++E+ RG  
Sbjct: 3   KLSKLTDYAAVVMAQIARHPEQAHAATELADAVQLPHPTVSKTLKMLVKAGLLESRRGSL 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA  IT  D++ A E    + EC +    DC L+ +CG+    ++   A   +
Sbjct: 63  GGYRLARPAAAITASDIIGAIEGPVAMTEC-SHADGDCDLLATCGVADNWQRVSLAIRTL 121

Query: 122 LTQYSIECLVRN 133
           L   ++  L + 
Sbjct: 122 LDSVTLAHLAQE 133


>gi|315918520|ref|ZP_07914760.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059669|ref|ZP_07924154.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
 gi|313685345|gb|EFS22180.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
 gi|313692395|gb|EFS29230.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 148

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 11  MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 70

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C     H+  C     CG T +  K   
Sbjct: 71  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 129

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 130 ALTKILSDTTLEDFINN 146


>gi|257453134|ref|ZP_05618433.1| RRF2 family protein [Fusobacterium sp. 3_1_5R]
 gi|257467390|ref|ZP_05631701.1| RRF2 family protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 138

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG + L Y A++ +     RI +IAE+  IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG RL     +IT+  V    ++   V +C     H+  C     CG T +  K   
Sbjct: 61  GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   +L+  ++E  + N
Sbjct: 120 ALTKILSDTTLEDFINN 136


>gi|217979263|ref|YP_002363410.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217504639|gb|ACK52048.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 144

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  YG++ L++ A+  + P   + IA    I   FL  IL  L KAGI+ + +G+ G
Sbjct: 2   LSNKGKYGLKALIHLAVF-EGPCLAADIAAHNQIPRKFLDAILLELRKAGILNSKKGKGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAF 118
           G  L RPAD+IT   +++  +       C +        DCP   +C +  ++    ++ 
Sbjct: 61  GYHLARPADKITAGQIIRILDGPLAPIACASRTAYRKCLDCPDEEACAVRDLMLDVRDSM 120

Query: 119 FDVLTQYSIECLVR--NRSSI 137
             +L + SI  L +  NR ++
Sbjct: 121 ALILDRTSIAALSKRGNRDNL 141


>gi|254302940|ref|ZP_04970298.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323132|gb|EDK88382.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 141

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  +  YG++ L Y A +  +    RI +I+E   IS  +L +IL  L    I+E  R
Sbjct: 1   MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
           G  GG +L     +I +  + K  ++   V +C      K        CG T +  K  N
Sbjct: 61  GPTGGYKLAIEPKEIDLYMIYKILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
           A   +L++ S++  + N   I
Sbjct: 121 AMTKILSETSLQDFINNGKKI 141


>gi|261406703|ref|YP_003242944.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261283166|gb|ACX65137.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 161

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 16/148 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K  DY +  L++ A    D+   I +++    +SE +L KI+  L + GIV  V G
Sbjct: 1   MQFSKSVDYALHALIHLAQSERDHNIGIKELSATLGVSESYLSKIMSKLRQDGIVRAVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGS 104
             GG  L +PA QIT L+V++  E    + EC                +    D P    
Sbjct: 61  VNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLKSQQHRLLTEEKPSDRNEDKPGACV 120

Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVR 132
           C +  V+  A       L + +I+ ++ 
Sbjct: 121 CLVKQVMDGAERQLNQYLEEQTIQSVLD 148


>gi|29832300|ref|NP_826934.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29609419|dbj|BAC73469.1| putative transcriptional regulator [Streptomyces avermitilis
           MA-4680]
          Length = 152

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R ++  A+  +D P +   IA A  I   FL  IL  L + G+V + RG
Sbjct: 1   MRISARADYAVRAVLELAVREDDGPVKAEAIAAAQDIPHKFLEGILGDLRRGGLVASRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R AD IT+ DV++A +             +         L  +         
Sbjct: 61  GNGGYRLARAADTITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWVALRANVR 119

Query: 120 DVLTQYSIECLVRN 133
            +L   ++  +  +
Sbjct: 120 KILEGVTLADIAAD 133


>gi|170759452|ref|YP_001788696.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406441|gb|ACA54852.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 133

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+   +    + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + I+ LD++ A E    + +C             C +  V+  A     
Sbjct: 61  ANGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLESH------SECVIKKVMLSAEGKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  LV+ 
Sbjct: 115 EELKNQKISDLVKK 128


>gi|292490815|ref|YP_003526254.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
 gi|291579410|gb|ADE13867.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
          Length = 163

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDYGI ++   A      +  + ++    +    + KIL+ L +A ++ + RG +
Sbjct: 3   RMSKMTDYGIVLMTRLAADPKGQHAAADLSAQVEMPLPTVSKILKQLARAQLLVSSRGAQ 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP + I++ +++   E    + EC ++   +C     C       +   A +  
Sbjct: 63  GGYSLARPPETISVAEIITTLEGPIGLTECISTPG-ECGQESHCSTRVHWERINQAVYGA 121

Query: 122 LTQYSIECLVR 132
           L +  +  +V+
Sbjct: 122 LNEIKLSDMVQ 132


>gi|319892680|ref|YP_004149555.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162376|gb|ADV05919.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464282|gb|ADX76435.1| transcriptional regulator, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 139

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A  H      +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L   A +IT  D+++  E    + E   S           G   +  +  NA  
Sbjct: 61  AKGGYELKMSATEITAGDIIRLLEGPLTIVERMESEPP--------GQQQLWLRMRNAVR 112

Query: 120 DVLTQYSIECLV--RNRSSIK 138
           +VL Q +++ L   +++ +++
Sbjct: 113 EVLDQTTLQSLADYQDKDALE 133


>gi|301065061|ref|ZP_07205404.1| transcriptional regulator, Rrf2 family [delta proteobacterium
           NaphS2]
 gi|300440829|gb|EFK05251.1| transcriptional regulator, Rrf2 family [delta proteobacterium
           NaphS2]
          Length = 139

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y +R ++Y +           ++AE   I   FL KI Q L K G++E  +G
Sbjct: 1   MRLTRAGEYAVRCVLYLSKKGKGALVSRKEVAEQAVIPSHFLAKIAQELAKVGMIEIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    ++IT+L VV+      F+ +C    K  C    +C +  V  +A +   
Sbjct: 61  AKGGFVLLMDPEEITLLQVVEIVIGEIFLNDCVVRPK-SCDASPNCSVHVVWMRARDQLR 119

Query: 120 DVLTQYSIECLVR 132
           D L   +   L++
Sbjct: 120 DTLGSVTFAELIK 132


>gi|17229573|ref|NP_486121.1| hypothetical protein alr2081 [Nostoc sp. PCC 7120]
 gi|17131172|dbj|BAB73780.1| alr2081 [Nostoc sp. PCC 7120]
          Length = 147

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y ++ L+  ++     P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1   MKLTTKGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R   +I+I  +++A +E+         H             S+ ++      
Sbjct: 61  SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L   ++  L  +  S +     
Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141


>gi|329895576|ref|ZP_08271072.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
 gi|328922255|gb|EGG29605.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
          Length = 149

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H +  P  ++ I+    IS  +L ++   L K G+V++VRG  GG  L +  + 
Sbjct: 4   MLDLALHREHGPIPLAGISARQDISLSYLEQLFAQLRKHGLVKSVRGPGGGYYLGKSLEV 63

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++ DV++A  E      C    +  C    +C    +     +   D L   S+  LV 
Sbjct: 64  ISVADVIEAVNEDTDATRC--RGRGSCQKGATCLTHHLWSGLSDQIRDFLRNISLADLV- 120

Query: 133 NRSSIKKI 140
            R  I++I
Sbjct: 121 VREEIREI 128


>gi|13471643|ref|NP_103209.1| hypothetical protein mlr1674 [Mesorhizobium loti MAFF303099]
 gi|14022386|dbj|BAB48995.1| mlr1674 [Mesorhizobium loti MAFF303099]
          Length = 149

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ +         ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|302548372|ref|ZP_07300714.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302465990|gb|EFL29083.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
          Length = 149

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK TD  +R +M  A+    P    QIA    +    L K+   L   G++ET RGR
Sbjct: 1   MRLTKSTDLALRAIMRLAVAGAEPCTARQIAGEMRVQYSHLAKVAARLQHLGLIETRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L       ++  +V+  E +  V +C       CPL   C L   LR+A  AFF 
Sbjct: 61  GGGLVLTETGRTASVGQLVRELEGADEVVDC--EGDTPCPLRQGCRLRMALRQAQEAFFS 118

Query: 121 VLTQYSIECLV 131
            L   ++  L+
Sbjct: 119 SLDPLTVTDLI 129


>gi|227539117|ref|ZP_03969166.1| rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241067|gb|EEI91082.1| rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 142

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ LM    +    P +I +IA+   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  V++  +    +  C    F     +C     CG+        NA
Sbjct: 62  GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
              +L   SI  L+     + 
Sbjct: 122 MLQILNDTSIAHLINKEKELN 142


>gi|303228774|ref|ZP_07315592.1| putative HTH-type transcriptional regulator CymR [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230469|ref|ZP_07317228.1| putative HTH-type transcriptional regulator CymR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514835|gb|EFL56818.1| putative HTH-type transcriptional regulator CymR [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516573|gb|EFL58497.1| putative HTH-type transcriptional regulator CymR [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 149

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + VL+  A      P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1   MRISTKGRYALMVLIDLAEQGQGKPVSLRSVAERQGISEKYLEGIVARLGAASLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL +   + TI++++ ATEES  +            ++             N   
Sbjct: 61  KYGGYRLSKKPSEYTIIEILMATEESMAIISSLDEGVSTDDVINE-RTVGFWAGLQNYIH 119

Query: 120 DVLTQYSIECLVR 132
           D L   +++ ++ 
Sbjct: 120 DYLESVTLQDVID 132


>gi|168183029|ref|ZP_02617693.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|237794464|ref|YP_002862016.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182673737|gb|EDT85698.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|229263280|gb|ACQ54313.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 145

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1   MKISTKGKYGIKAIIDLAINSTEETVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + +  IT  ++++A E    V E      ++  +  S     +  +   +  
Sbjct: 61  AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118

Query: 120 DVLTQYSIECLVR 132
            V+   ++E LV 
Sbjct: 119 KVVDSITLEDLVE 131


>gi|170721542|ref|YP_001749230.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           W619]
 gi|169759545|gb|ACA72861.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           W619]
          Length = 179

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L+Y          + +  +A+   + + +L K+   L +A +V   
Sbjct: 1   MSLYSAGVEYGIHCLLYLVDERGDTRESSVRDLAQLQGVPQEYLAKVFTKLARAKLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RP+D+IT+LD+V A +    + +C         F          G+C + 
Sbjct: 61  EGVRGGFRLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFEGSPPGWATEGTCAIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  L R 
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145


>gi|146295458|ref|YP_001179229.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409034|gb|ABP66038.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 137

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +R++++ +           I+E   I + FL KI + L+KAGI+E+ RG+
Sbjct: 1   MRLTQASDYALRIVLHLSKKKGVVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119
            GG  L +  + IT+ DV+ A E +  +  C            G C +       +    
Sbjct: 61  NGGYVLAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMEIVA 120

Query: 120 DVLTQYSIECLVR 132
               +Y+   L +
Sbjct: 121 KEFEKYNFAELAK 133


>gi|284046839|ref|YP_003397179.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Conexibacter woesei DSM 14684]
 gi|283951060|gb|ADB53804.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
           DSM 14684]
          Length = 157

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + + +YG+R+++       + P  +  IA A  +   +L +++  L KA +V + RG
Sbjct: 1   MIFSSKAEYGVRLMVELGRQGAEQPISLKAIAAAEQLPLAYLEQVVARLKKAELVRSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVG------SCGLTSV 110
             GG  L RPA++IT+ +VV A E +    ECF +   +   C  V        C    +
Sbjct: 61  AHGGYWLARPAEEITMDEVVLALEGAIAPMECFVNEHTERVLCSHVDHGDADQHCATKLL 120

Query: 111 LRKALNAFFDVLTQYSIECLVR 132
             +        L   ++  LV 
Sbjct: 121 WMRVQGGVIRSLQTTTLAELVE 142


>gi|159185735|ref|NP_357183.2| hypothetical protein Atu3423 [Agrobacterium tumefaciens str. C58]
 gi|159140869|gb|AAK89968.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 149

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       +++IA    I + FL  IL  L  +GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSKLPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
              +L   ++   V      ++   AG
Sbjct: 122 IATILDNMTLAQFVAKDGQDQRSIPAG 148


>gi|159044849|ref|YP_001533643.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912609|gb|ABV94042.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 139

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 69/131 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R+LM  A   +     + +AE   +S   L KI+Q L +AGIVET RG 
Sbjct: 1   MRLTSFTDYGLRMLMRMASAPERAFSTADLAEEFDLSRHHLSKIMQRLSRAGIVETRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +PA ++ +  V+   E+   + ECF S    C +   CGL + LR A  AF  
Sbjct: 61  GGGATLAQPASELRLGRVIAVLEQDQPIVECFGSGPHSCTIDRQCGLKARLRAAERAFLT 120

Query: 121 VLTQYSIECLV 131
            L + ++  + 
Sbjct: 121 DLDRSTLADIA 131


>gi|119385683|ref|YP_916738.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119376278|gb|ABL71042.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 152

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  AI   D    +++I++   IS  +L ++   L +AG+V++VRG
Sbjct: 1   MKLSTKGRYAMVALVDLAIAKGDELTSLAEISKRQDISLPYLEQLFVRLRRAGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL +  + I + DV++A +E+       A          +  L++ L ++L+A  
Sbjct: 61  PGGGYRLAKAPETIRVADVLEAVDETVSALHIGAGASGGISGSRAQTLSNRLWESLSAHV 120

Query: 119 FDVLTQYSIECLVRNR----SSIKKIFN 142
           +  L  +++  + RN+     ++ KI +
Sbjct: 121 YVFLHNHTLADVARNQLLPCPALPKILS 148


>gi|22298046|ref|NP_681293.1| hypothetical protein tlr0503 [Thermosynechococcus elongatus BP-1]
 gi|22294224|dbj|BAC08055.1| tlr0503 [Thermosynechococcus elongatus BP-1]
          Length = 145

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y +  L+    A     P +I QIA    I + +L +++  L + G++ + R
Sbjct: 1   MELSAKSEYALLALLEMSAAYEQGEPLQIRQIAAMHNIPDRYLEQLMATLRRKGLIRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L +   QI+ILDV+   E    +    A    D   +    + SV  +A  A 
Sbjct: 61  GARGGYVLAKAPWQISILDVLNCIEG---IESKLAQKPPDNGDLERSLIRSVWLEACKAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            DVL +Y+++ L   R + +++
Sbjct: 118 NDVLKKYTLQDLCDRRQAYQQV 139


>gi|193216387|ref|YP_001997586.1| BadM/Rrf2 family transcriptional regulator [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089864|gb|ACF15139.1| transcriptional regulator, BadM/Rrf2 family [Chloroherpeton
           thalassium ATCC 35110]
          Length = 132

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +TK+ +YG+  + Y A+  N       +I+E   I    L K LQ L KAG++ +V+G 
Sbjct: 3   KVTKKFEYGLIAVRYIAMTSNGEVATAKEISERMGIPYELLAKTLQRLTKAGVITSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L RP  QIT+ ++ +A E    + EC A+    C L  +C +   L      F  
Sbjct: 63  KGGYKLSRPPKQITLGEIAEAIEGPLNLTECQATQDT-CHLYSTCAIKKSLVHIQQRFQH 121

Query: 121 VLTQYSIECLV 131
           +  Q +++ ++
Sbjct: 122 IFDQATVDEIL 132


>gi|145223660|ref|YP_001134338.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315443986|ref|YP_004076865.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Mycobacterium sp. Spyr1]
 gi|145216146|gb|ABP45550.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
           PYR-GCK]
 gi|315262289|gb|ADT99030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
           Spyr1]
          Length = 148

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  +     D      +IA +   SE  + K +  LV+ G+VE  R
Sbjct: 1   MQLTRFTDLGLRAMMLLSAGEFADKRVTTGRIAASAGASENHIAKAVSRLVELGLVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C    +  CPL+  C L   L +A  AF
Sbjct: 61  GRIGGLSLTEAGRTASVGWLVRELEGDREVVNC--QGETACPLIAGCRLRHALARAKEAF 118

Query: 119 FDVLTQYSIECLVRNRS 135
           +  L  Y++  L R+ +
Sbjct: 119 YAELDNYTVSDLARSPT 135


>gi|260463874|ref|ZP_05812071.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259030471|gb|EEW31750.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 149

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L++ + +       ++ IA A  I + FL  IL  L  AG V++ +G+ 
Sbjct: 2   LTKKGKYGLKALVHLSGLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I I  VV+  +       C +        DC    +C +  ++ +   A
Sbjct: 62  GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120

Query: 118 FFDVLTQYSIECL 130
             +VL   S+  +
Sbjct: 121 IAEVLDNRSLAAM 133


>gi|238784222|ref|ZP_04628235.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
           43970]
 gi|238714931|gb|EEQ06930.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
           43970]
          Length = 164

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A+H+ D P  ++ I++   IS  +L ++   L K G+V +VRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSHDGPVPLADISDRQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + A  I +  V+ A ++S     C    K  C     C   S+         
Sbjct: 61  PGGGYLLGKDAAAIAVGAVIIAVDDSVDATRC--KGKEGCQDGNICLTHSLWCDLSKRIC 118

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  LV N+  ++
Sbjct: 119 GFLNDITLAELVNNKDILE 137


>gi|218463489|ref|ZP_03503580.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
 gi|218663550|ref|ZP_03519480.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
          Length = 154

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++E  V 
Sbjct: 122 IAAILDNMTLEQFVA 136


>gi|169828688|ref|YP_001698846.1| hypothetical protein Bsph_3207 [Lysinibacillus sphaericus C3-41]
 gi|168993176|gb|ACA40716.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 161

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 7   TDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            +Y +  L+Y   +  +    I  ++E   +SE +L K+L  L KAGIV +V G +GG R
Sbjct: 2   VEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSGVKGGYR 61

Query: 66  LCRPADQITILDVVKATEESFFVAEC------FASHKIDCPLVGS----CGLTSVLRKAL 115
           L +  + I+  DVVKA E    + +C      FA+   +C    S    C +  V+ +A 
Sbjct: 62  LSKRPEDISFWDVVKAVEGESPIFQCKNIKANFANKTGNCDSCPSATSDCTINIVMLEAE 121

Query: 116 NAFFDVLTQYSIECL 130
               + L   +I  L
Sbjct: 122 EQMRNYLRGKTIAWL 136


>gi|226227389|ref|YP_002761495.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090580|dbj|BAH39025.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
          Length = 163

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T   +YG+   ++ A   +  P     +A    +   ++ +IL  + +AGIV + RG
Sbjct: 1   MRITTWAEYGLICALHLARRGETGPVTGRDVATRERLPGDYVEQILLRMRRAGIVNSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNA 117
            RGG  L R   +I++ DV++A+E + F   C +       C    +C +  V       
Sbjct: 61  ARGGYMLARKPSEISVRDVIQASELTTFDLHCVSHPVDAGRCSESENCSIRPVWMLLQQR 120

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
             +VL    +  L+ + S ++ 
Sbjct: 121 IDEVLEGVKLSDLLADESVVRD 142


>gi|289664563|ref|ZP_06486144.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671188|ref|ZP_06492263.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 152

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A H D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAAHCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|312126489|ref|YP_003991363.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776508|gb|ADQ05994.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 137

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ +DY +R++++ +           I+E   I + FL KI + L+KAGI+E+ RG+
Sbjct: 1   MRLTQASDYALRIVLHLSKKKGMVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119
            GG  L +  + IT+ DV+ A E +  +  C            G C +       +    
Sbjct: 61  NGGYILAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMKTVA 120

Query: 120 DVLTQYSIECLVR 132
               +Y+   L +
Sbjct: 121 KEFEKYNFAELAK 133


>gi|293375225|ref|ZP_06621510.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
           PC909]
 gi|325845593|ref|ZP_08168879.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
           HGF1]
 gi|292646161|gb|EFF64186.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
           PC909]
 gi|325488377|gb|EGC90800.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
           HGF1]
          Length = 131

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+K +DY  R L+Y A H D    + +++     SE  + K++  L K   V +++GR
Sbjct: 1   MQLSKFSDYSFRALIYLAQHRDQLCTVEELSMNLNTSEQHMKKVIHKLGKTPYVTSIKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119
            GG+RL     +I + +++K TE++  + ECF +    CPL+ S C L S+   AL  F 
Sbjct: 61  GGGLRLGCEPQEINLGEILKITEDNLNILECF-NKSAGCPLLSSGCKLKSITSDALQKFI 119

Query: 120 DVLTQYSIECLV 131
           +  + Y++E L+
Sbjct: 120 EEFSNYTLEDLL 131


>gi|297153681|gb|ADI03393.1| hypothetical protein SBI_00272 [Streptomyces bingchenggensis BCW-1]
          Length = 148

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LT+ TD  +R +M  A+   +       IA++  +    + K +  L   G+VE  RGR
Sbjct: 4   RLTRYTDLALRAVMRLAVMDGEELLTTRLIADSMNVPYTHMAKTIAHLQHLGVVEARRGR 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L        + ++++  E       C    +  CPL G+C L   LR A  AF+ 
Sbjct: 64  NGGLMLTDAGRNTRVGELIRVLEGDREAVVC--EGEAPCPLAGACRLRRALRDAQEAFYA 121

Query: 121 VLTQYSIECLVRNRSS 136
            L Q ++  LV + + 
Sbjct: 122 SLDQVTVADLVASPAG 137


>gi|227823095|ref|YP_002827067.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
 gi|227342096|gb|ACP26314.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
          Length = 151

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       +++IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLASLGPGETAFVTEIATRNNIPKKFLDTILLELRNTGILRSKKGPN 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA +I I  V++A +       C +        DC     C +   + +  +A
Sbjct: 62  GGYSLSKPASEIMIGQVIRALDGPLAPIRCASRTAFEACDDCNDPVGCQVRLSMTEVRDA 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++   V  
Sbjct: 122 IATILDNMTLAQFVAK 137


>gi|303327293|ref|ZP_07357735.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863281|gb|EFL86213.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 140

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +T Y  R+L Y A H  + P   + +A    IS  F+ +IL+ L  AGI  +VRG
Sbjct: 1   MKLSAKTRYAARILFYMAKHVMNEPISSNLLAAKTGISSQFIEQILRQLRLAGITGSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R  +++T   +VK  E    +A C   +  +C   G C +            
Sbjct: 61  AKGGHILLRKPEELTFGCIVKLMEGGIELAGCL-ENPGNCSRFGDCAVRKAWESLQGTLD 119

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++E L+R++ 
Sbjct: 120 GALESITMEDLLRDKE 135


>gi|114327990|ref|YP_745147.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316164|gb|ABI62224.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 179

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVETV 57
            L+K TDY + VL+  A  +   +        IA A  + E  + K+L+ L    +V + 
Sbjct: 6   RLSKLTDYAVVVLIRLAAESGEASGRVQTAPCIAAATGVPEPTVAKVLKALSVGRLVVSQ 65

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG RL R  DQI+I DV++  E    +  C      DC     C +        +A
Sbjct: 66  RGAHGGYRLNRFLDQISIADVIRVLEGPIALTACVEGAHPDCEAACLCPMRGRWDMVNHA 125

Query: 118 FFDVLTQYSIECLVRNR 134
               L+  S+  + R  
Sbjct: 126 IATALSSISLADMARQP 142


>gi|329934735|ref|ZP_08284776.1| putative transcriptional regulator of sulfate adenylyltransferase,
           Rrf2 family [Streptomyces griseoaurantiacus M045]
 gi|329305557|gb|EGG49413.1| putative transcriptional regulator of sulfate adenylyltransferase,
           Rrf2 family [Streptomyces griseoaurantiacus M045]
          Length = 152

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R ++  A+     P +   +AE   IS  FL  IL  L + G+V + RG
Sbjct: 1   MRISARADYAVRAVVELAVRQGGGPVKAEAVAEVQDISHKFLEGILGDLRRGGLVASRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAF 118
             GG RL R A+ IT+ D+++A +                   G    L  +        
Sbjct: 61  GNGGYRLAREAEAITVADIIRAVDGPIVSVR--GERPTQLKYTGPAEPLLPLWIALRANV 118

Query: 119 FDVLTQYSIECLVR 132
            +VL   ++  L  
Sbjct: 119 REVLEGVTVADLAA 132


>gi|332186375|ref|ZP_08388120.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
 gi|332013743|gb|EGI55803.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
          Length = 151

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + ++   A       +  + +A    +      K++  L  AG++E+ RG
Sbjct: 1   MRLSSLADYAVVMMTAAAREGVGGRSNATLLAGQTGVPLPTAQKLVSRLAGAGLIESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+RL R AD I++ D+V+A +    +  C      DC L   C +         A  
Sbjct: 61  TGGGIRLARDADAISLADIVEAVDGPIALTACVEGAAHDCGLEMQCRVRPHWHVVNQAVR 120

Query: 120 DVLTQYSIECLVRNR 134
              +  ++  L  + 
Sbjct: 121 AAFSGVTLATLAADP 135


>gi|300770623|ref|ZP_07080502.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300763099|gb|EFK59916.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 147

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ LM    +    P +I +IA+   I + FL +IL  +  AGI+ + +G  
Sbjct: 2   LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  V++  +    +  C    F     +C     CG+        NA
Sbjct: 62  GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
              +L   SI  L+     + 
Sbjct: 122 MLQILNDTSIAHLINKEKELN 142


>gi|91790106|ref|YP_551058.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699331|gb|ABE46160.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
          Length = 154

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDYG  ++ + A    +    +++A A  ++     KIL+ L +A +++++RG  
Sbjct: 3   RLSKLTDYGTVIMTHMARQPAHVYSAAEVALAVSVTVPTASKILKTLARANLLQSLRGTH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP D+I+I +VV A E    V EC A+  + C   GSC L +  +       +V
Sbjct: 63  GGYLLSRPPDEISIAEVVDAMEGPVGVTECSAAVGL-CAQEGSCSLRANWQHVNQVIRNV 121

Query: 122 LTQYSIECLVR 132
           L+  ++  + +
Sbjct: 122 LSDLTLADMAQ 132


>gi|75909333|ref|YP_323629.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75703058|gb|ABA22734.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
           ATCC 29413]
          Length = 147

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R   +I+I  +++A +E+         H             S+ ++      
Sbjct: 61  SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L   ++  L  +  S +     
Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141


>gi|294792716|ref|ZP_06757863.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
 gi|294794467|ref|ZP_06759603.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
 gi|294454797|gb|EFG23170.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 3_1_44]
 gi|294456615|gb|EFG24978.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
           sp. 6_1_27]
          Length = 149

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + VL+       D P  +  +AE   ISE +L  I+  L  A +V+++RG
Sbjct: 1   MRISTKGRYALMVLIDLVEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL +   + TI++++ ATEES  +          D  +              N  
Sbjct: 61  KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE--RTVGFWAGLQNYI 118

Query: 119 FDVLTQYSIECLVR 132
            D L   +++ ++ 
Sbjct: 119 HDYLENVTLQDVID 132


>gi|325925546|ref|ZP_08186934.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
           91-118]
 gi|325544050|gb|EGD15445.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
           91-118]
          Length = 172

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 23  RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 82

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 83  GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 141

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 142 LRRVTLAQMLQ 152


>gi|209525268|ref|ZP_03273810.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
           CS-328]
 gi|209494283|gb|EDZ94596.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
           CS-328]
          Length = 147

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  A + N  P  +  IA    I   +L K+L  + + G+V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLAVLQNQGPISVRAIASRQNIPAPYLEKLLIEMRQRGLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L  P  QI++  +++A  E+       ++H+ D   +      ++  +      
Sbjct: 61  AHGGYQLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEKIEDWVTFTLWNRLHEKLK 117

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 118 EALYSISLEDL 128


>gi|209550687|ref|YP_002282604.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536443|gb|ACI56378.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 154

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   S+E  V 
Sbjct: 122 IAAILDNMSLEQFVA 136


>gi|84499296|ref|ZP_00997584.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
 gi|84392440|gb|EAQ04651.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
          Length = 139

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDYG+R LM  A   +     ++IA+   IS   L K++Q L + G V T RG 
Sbjct: 1   MRLTSFTDYGLRALMRMASVPERAFSTAEIADEFGISRNHLNKVVQRLARHGFVATRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L  PA +I + D+V+  E+   + ECF+     C +   C L   L  A  AF  
Sbjct: 61  GGGAILALPASEIGLGDLVRLLEQDQALVECFSPDGACC-VTPVCRLKGKLYAAEAAFLA 119

Query: 121 VLTQYSI 127
            L + ++
Sbjct: 120 ELDRSTL 126


>gi|289767152|ref|ZP_06526530.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289697351|gb|EFD64780.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 148

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK TD  +R +M  A+    D P    ++AE   +      K +  L   G+VE  R
Sbjct: 1   MRLTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L     + ++  +V+  E    V +C       CPL G+C L   LR A  AF
Sbjct: 61  GRGGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L   ++  LV   + 
Sbjct: 119 YAALDPLTVTDLVAAPTG 136


>gi|256389580|ref|YP_003111144.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256355806|gb|ACU69303.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + DY +RV++  A H     + + + +   +   F+  IL  L +A ++ + RG 
Sbjct: 1   MQISAKADYAVRVMLELAAHGPNLVKSTVLIDHQGLPRKFVESILVELRRADLIRSHRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA  I+I  V++A +           H+ +        L+ V   A  A   
Sbjct: 61  EGGYTLARPASAISIGQVIRAVDGPLAEVRGLRPHETEYSNAAQ-HLSDVWVAARAALRK 119

Query: 121 VLTQYSIECLVRNR 134
           VL + S+  ++  +
Sbjct: 120 VLDETSLAHVLSGK 133


>gi|299538065|ref|ZP_07051350.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298726267|gb|EFI66857.1| putative HTH-type transcriptional regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 139

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++   +       +  +AE   +S  +L KIL  LVKAG++E+  G
Sbjct: 2   MKYSKATNYALHTMVFLTRNPKGKSMSVESLAEIQKLSPTYLSKILTKLVKAGLIESNPG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+ +   +I+ LDV+ A E    +  C + H       G C +  V+  A N   
Sbjct: 62  VNGGYRISKRPQEISFLDVIYAIEGQTSLFSCSSEHNDSFHHQG-CLIEQVMVDAENNMK 120

Query: 120 DVLTQYSIECLVRN 133
           + L +  I  +   
Sbjct: 121 EELNKKFIIDIAHK 134


>gi|94495944|ref|ZP_01302523.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
 gi|94424636|gb|EAT09658.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
           sp. SKA58]
          Length = 141

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A  +   P  +++IA    I   FL  IL  L + G+V T RGR 
Sbjct: 2   LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSELSREGLVATQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L      ++  D+V+ T  S  +  C +        +C     C L  ++ +  + 
Sbjct: 62  GGYWLALAPVDVSYGDIVRLTRGSLALTPCASRFAHESCTNCLPESECRLHRIMLRVRDE 121

Query: 118 FFDVLTQYSIEC 129
              VL   S+  
Sbjct: 122 TAKVLDGISLAE 133


>gi|15895504|ref|NP_348853.1| hypothetical protein CA_C2236 [Clostridium acetobutylicum ATCC 824]
 gi|15025236|gb|AAK80193.1|AE007724_2 Uncharacterized conserved protein of YjeB/RRF2 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325509651|gb|ADZ21287.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 147

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG++ ++  A+++ +    +  I++   ISE +L +I   L K G+V+  +G
Sbjct: 1   MKISTKGRYGLKAMIDLAVNSVNDIVTLKSISQREKISEGYLEQIFSALRKKGLVKGRKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-----ECFASHKIDCPLVGSCGLTSVLRKA 114
            +GG  L +   +IT+ D++ A E    V      E     K+D  + G+     V  K 
Sbjct: 61  SQGGYVLGKSMKEITVADILNALEGDLSVVERDENEILKEDKLDNFIRGN-----VWTKI 115

Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
             A  +V+   ++E LV + +++
Sbjct: 116 NMAIEEVVVSITLEDLVMDYNNV 138


>gi|307323873|ref|ZP_07603082.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890322|gb|EFN21299.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 158

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + DY +R L   A   D P     IA +  I   FL  + + L +AG+V + RG 
Sbjct: 23  MQISAKADYAVRALAELAADTDRPLTCEAIATSQGIPFRFLKAVFRDLRQAGLVRSQRGC 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R   ++T+ D+V A + +F          +      + GL  V R   +    
Sbjct: 83  EGGYWLARDPAEMTLADIVLAVDGAFLTLRGERLDDLGYH-GPAAGLPGVWRGMEDHVRQ 141

Query: 121 VLTQYSIECLVRNR 134
           VLT  ++  LVR R
Sbjct: 142 VLTATALSDLVRER 155


>gi|295095801|emb|CBK84891.1| rrf2 family protein (putative transcriptional regulator)
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM    A  N+    + ++A    +   +L KI   L +AG+V +  G+ 
Sbjct: 5   SSGVEYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVISTEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RPA+ I++LDV  A +    + EC         F          G CG+ SV+ 
Sbjct: 65  GGFRLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L +++I  L R 
Sbjct: 125 SAQQRMEEELGRHTILDLARK 145


>gi|148653426|ref|YP_001280519.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
           PRwf-1]
 gi|148572510|gb|ABQ94569.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
           PRwf-1]
          Length = 173

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  AI +        +S IA+   IS  +L ++   L KAG+V + 
Sbjct: 1   MRLTTRGRYAVTALLDLAIQDGDSTNAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L +P   I ++ ++ A +ES          + +C     C    +       
Sbjct: 61  RGASGGYHLAKPLADIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSKH 118

Query: 118 FFDVLTQYSIECLVR 132
               L   S+E L++
Sbjct: 119 IEQYLKNISLEQLLQ 133


>gi|154244166|ref|YP_001415124.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154158251|gb|ABS65467.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 148

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++  ++ A +      +++ IAEA  I + FL  IL  L  AG + + +G+ 
Sbjct: 2   LTKKGKYGLKAAVHLARLPPGASTQVADIAEANNIPKKFLDVILGELRNAGFLSSKKGKL 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CP--LVGSCGLTSVLRKALNAF 118
           GG RL R  ++I + ++++A +       C + +  + C    V +C +  ++ +  +A 
Sbjct: 62  GGYRLARAPEEIVVGEMIRALDGPLAPFACASRNAYEQCEDCDVATCEVRMLMVQVRDAI 121

Query: 119 FDVLTQYSIECL 130
             VL  Y++  +
Sbjct: 122 GTVLDTYTLAQM 133


>gi|148379163|ref|YP_001253704.1| rrf2 family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932538|ref|YP_001383539.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935743|ref|YP_001387088.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|153939009|ref|YP_001390526.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|168178597|ref|ZP_02613261.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|170754484|ref|YP_001780801.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|187780211|ref|ZP_02996684.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
           15579]
 gi|226948445|ref|YP_002803536.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148288647|emb|CAL82728.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928582|gb|ABS34082.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931657|gb|ABS37156.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|152934905|gb|ABS40403.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|169119696|gb|ACA43532.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|182670637|gb|EDT82611.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|187773836|gb|EDU37638.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
           15579]
 gi|226844524|gb|ACO87190.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295318607|gb|ADF98984.1| rrf2 family protein [Clostridium botulinum F str. 230613]
          Length = 145

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1   MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + +  IT  ++++A E    V E      ++  +  S     +  +   +  
Sbjct: 61  AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118

Query: 120 DVLTQYSIECLVR 132
            V+   ++E LV 
Sbjct: 119 RVVDSITLEDLVE 131


>gi|330836543|ref|YP_004411184.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
 gi|329748446|gb|AEC01802.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
          Length = 144

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ RT YG+R+L+  A  +   P  ++  A    I   +L ++   L  +G + +V+G
Sbjct: 1   MKISTRTHYGVRLLVDLASQDMADPVPLATTAGRQDIPLRYLEQVADILRWSGFLLSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  I + DV++A E    + +   SH+ +  L   C   +V  K  +A  
Sbjct: 61  ASGGYRLARPAQDILLGDVLRALEGDLNIVDPLQSHEAENRLQ-QCLRLTVYNKLEHAIA 119

Query: 120 DVLTQYSIECLV 131
           +V+   S+  L+
Sbjct: 120 NVVDTISLASLI 131


>gi|260221138|emb|CBA29404.1| HTH-type transcriptional regulator iscR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 145

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++   +  +  P  ++ I++   IS  +L ++   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDLGLRQSSGPVTLAAISQRQQISLSYLEQLFGKLRRHDLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKA 114
             GG  L R A  IT+ +++ + +E     +C  S K +C   G+ C    +    
Sbjct: 61  PGGGYTLARKASDITVAEIITSVDEPIDATQC--SGKENCLGEGARCMTHDLWASL 114


>gi|315647231|ref|ZP_07900344.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315277433|gb|EFU40762.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 161

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 16/144 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K TDY +  L++  +   +    I +++    +SE +L KI+  L + GIV  V G
Sbjct: 1   MQFSKSTDYALHALIHLGLSERNNNIGIKELSATLGVSETYLSKIMSKLRQDGIVRAVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGS 104
             GG  L +  +QIT LDV++  E    + EC                       P    
Sbjct: 61  VNGGYELAKSPEQITFLDVIQVIEGRQHLFECSNTSSRQHEVLAEVEDDQGDSIRPRKNG 120

Query: 105 CGLTSVLRKALNAFFDVLTQYSIE 128
           C +  V+  A       L +Y+I+
Sbjct: 121 CLVEKVMLGAEQHMHQYLREYTIQ 144


>gi|308071586|ref|YP_003873191.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860865|gb|ADM72653.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 132

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  ++Y  + + D P  +  +A    +S  +L K++  LVKAG++++V G
Sbjct: 1   MKYSQATDYALHAMLYLVMSDSDKPIGVQMLAAKLNVSRTYLSKMMAQLVKAGLIQSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +  + I+ LDV++A E +  + EC   H         C +  V+  A     
Sbjct: 61  VNGGYRLRQRGEDISFLDVIQAIEGTASLFECSLDHGTK------CLIQQVVFDAERQME 114

Query: 120 DVLTQYSIECLVR 132
           D L    I  L++
Sbjct: 115 DYLRHKKIADLIK 127


>gi|158424803|ref|YP_001526095.1| hypothetical protein AZC_3179 [Azorhizobium caulinodans ORS 571]
 gi|158331692|dbj|BAF89177.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 148

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++  ++ A +     N++++IAEA  I + FL  IL  L  AG + + +G+ 
Sbjct: 2   LTKKGKYGLKAAVHLARLGPGESNQVAEIAEANQIPKKFLDVILGELRNAGFLSSKKGKT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117
           GG +L +  + I + D+++A +       C + +      DC +   C +  ++ K  +A
Sbjct: 62  GGYKLAKLPEDIIVGDLIRALDGPLAPIPCASRNAFVPCDDCDVE-HCEVRRLMVKVRDA 120

Query: 118 FFDVLTQYSIE---CLVRNR 134
              VL  Y++     L ++R
Sbjct: 121 MGTVLDTYTLAQMRDLRQDR 140


>gi|148654472|ref|YP_001274677.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566582|gb|ABQ88727.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus sp. RS-1]
          Length = 146

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +YG+R L+  A    + P +   I     I E +L +IL  L +A ++E++RG
Sbjct: 1   MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRARLIESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL R   QIT+LD + A E     A+           +    +  V   A     
Sbjct: 61  PQGGHRLARHPSQITVLDALLALEGPLLAADSGRDAPTPTEPMDRELVREVWDGAREMLE 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++E L + ++ 
Sbjct: 121 RYLASITLEDLCQRKAQ 137


>gi|282896876|ref|ZP_06304882.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
 gi|281198285|gb|EFA73175.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
          Length = 145

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  N  P +I QIA    I + +L ++L  L + GI+++ R
Sbjct: 1   MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT+LD+++  E     +AE       +     S  +  + ++A  A
Sbjct: 61  GSKGGYLLAREPRKITVLDILECLEGLDIKIAE----DNTNPKTADSGIIDEIWQEARQA 116

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              VL +YS+E L   R+  +++
Sbjct: 117 ANLVLEKYSLEDLCEKRTLRRQL 139


>gi|326386610|ref|ZP_08208232.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208925|gb|EGD59720.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 164

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY +  +   A    +      Q+AE   +    + K++  L  AG++ +VRG
Sbjct: 1   MRLSSMADYAVVAMSAAARRCGHARVSAQQLAEDTGLPVPTVQKLVSKLSAAGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+ L RPA  I++ D+V+A E    +A+C  + + DC +   C +         A  
Sbjct: 61  AGGGLTLARPAAAISLADIVEAVEGPIAMAQCSDNSRHDCTIGQGCQVRPHWPAVDAALR 120

Query: 120 DVLTQYSIECLVRNRSS 136
             L   S+  L    + 
Sbjct: 121 HALAGVSLSQLAAPGTQ 137


>gi|227499551|ref|ZP_03929658.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227218310|gb|EEI83564.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 133

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A ++      +S+I++   +SE +L ++++ L K G++ + RG
Sbjct: 1   MKLSTRGRYGLRAMCYLASNSSRGYISVSEISDKLNLSENYLEQLIRLLKKEGLISSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG ++ R  D++T+ D+++  E +  +++C +   ++C     C    V  K      
Sbjct: 61  PKGGYKITRDLDELTVGDILRVLEGNITISDCVSGD-VNCD--DKCDAYYVFDKIDKVLN 117

Query: 120 DVLTQYSIECLVRNR 134
           + +   S++ ++   
Sbjct: 118 EAIDSISLKNIINQE 132


>gi|150395418|ref|YP_001325885.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150026933|gb|ABR59050.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 153

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I++IA+   I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEICEDCSDPETCRVRISMTSVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++     
Sbjct: 122 MSSILDSMTLSEFAA 136


>gi|121594469|ref|YP_986365.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606549|gb|ABM42289.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 179

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++          + +  +AE   + + +L K+   L +AG+V   
Sbjct: 1   MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RPA QI++LD+V A +    + +C         F          G+C + 
Sbjct: 61  EGVRGGFRLARPAAQISVLDIVHAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
           +V+  A     + L Q ++  L 
Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143


>gi|85704175|ref|ZP_01035278.1| Rrf2 family protein [Roseovarius sp. 217]
 gi|85671495|gb|EAQ26353.1| Rrf2 family protein [Roseovarius sp. 217]
          Length = 140

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 71/135 (52%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD+G+R+LM  A   D     +++A    +S   L KI+Q L +AG+++T RG 
Sbjct: 1   MRLTSFTDFGLRMLMRMASAPDRAFSSAELATEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  QI + DV++  E    +  CF     DC L G C L + LR A  AF D
Sbjct: 61  GGGALLARPPAQIRLGDVIRHLESGQALVACFGPEAGDCSLDGRCRLKARLRSAERAFLD 120

Query: 121 VLTQYSIECLVRNRS 135
            L + ++  +  + +
Sbjct: 121 DLDRSTLADIALDPT 135


>gi|297537962|ref|YP_003673731.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
 gi|297257309|gb|ADI29154.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
          Length = 153

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +RVLMY        P  I++IAE   +    L K++  L K G V   RG
Sbjct: 1   MQLTKFTDLSLRVLMYLTQEERLMPVTINEIAEQFTVPRNHLIKVVTRLNKLGWVSATRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+RL   A+Q+ + +V++  E +  + +C    K  C L G+C L  +L   L AF+
Sbjct: 61  RNGGLRLGVQANQLKLGNVLQELENASALIDCA---KPPCALKGNCHLKEILDIGLKAFY 117

Query: 120 DVLTQYSIECLVRNRSS 136
           + +  +S+  +V +++ 
Sbjct: 118 EHMNTFSLADVVNHKTQ 134


>gi|94313237|ref|YP_586446.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357089|gb|ABF11177.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
           metallidurans CH34]
          Length = 191

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++   +YG+  L+Y +          +  +AE   I   +L K+   L KA +V    G 
Sbjct: 4   ISTGVEYGLHCLLYLSRSQASVETASVRDLAELQGIPADYLAKLFTKLAKANLVVATEGI 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
           RGG  L RPAD+IT+ DVV A +    + +C         F          G C + +V+
Sbjct: 64  RGGFSLARPADKITVHDVVVAIDGDKPLFDCLEIRDRCAVFDEAPPAWATRGVCSIHAVM 123

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
           + A  A    L Q+++  +   
Sbjct: 124 QSAEKAMRHELRQHTLLDIANR 145


>gi|182678359|ref|YP_001832505.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634242|gb|ACB95016.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 149

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A         ++ IA A  I + FL  IL  L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGRPLGEATLVTDIAVANEIPKKFLDTILGELRNAGFVNSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I +  +V+  +      +C +        DC     C +  ++ +A NA
Sbjct: 62  GGYTLARPAHEIMVGHIVRVLDGPLAPIQCASKTSYRRCDDCADEKKCTVRLLMLEARNA 121

Query: 118 FFDVLTQYSIECL 130
              VL   S+  +
Sbjct: 122 IAMVLDNRSLAEM 134


>gi|325122368|gb|ADY81891.1| hypothetical protein BDGL_001305 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 164

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D P     +AE   +S  F+ KI   L KAG+V    G RGG  L RPA +I+ LD+V
Sbjct: 3   NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRGGYLLARPAHEISFLDIV 62

Query: 80  KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            A E    + EC         F +   D    G C + +V+ +A  A  D L  +++  +
Sbjct: 63  NAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122

Query: 131 VRN 133
              
Sbjct: 123 ADR 125


>gi|319941644|ref|ZP_08015968.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804874|gb|EFW01728.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
          Length = 178

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+T+ TD  +RVLMY  A  +     +++IAE    +   + K++  L + G + T RG
Sbjct: 1   MHITRFTDLSLRVLMYLCARPSQDRTTVTEIAERIGWTRNHVVKVVHRLSQEGWLATQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   A ++ + +V++  E    +  C       C     C L  VL  A N F+
Sbjct: 61  RTGGLGLDPQARKLRLGNVIRTLEGDDCLINC---KDPPCNFGRGCPLIKVLNDAQNVFY 117

Query: 120 DVLTQYSIECLVRN 133
           + L  Y++E + ++
Sbjct: 118 EALNAYTLEDVAQH 131


>gi|86358962|ref|YP_470854.1| hypothetical protein RHE_CH03364 [Rhizobium etli CFN 42]
 gi|86283064|gb|ABC92127.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 154

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RPA +I I  V++  +       C +        DC    +C +   +    +A
Sbjct: 62  GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++E  V 
Sbjct: 122 IAAILDNMTLEQFVA 136


>gi|302336476|ref|YP_003801683.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
 gi|301320316|gb|ADK68803.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
           7084]
          Length = 163

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L            +   +E   I   F   I   LV+AGI+E+ RG 
Sbjct: 1   MDISRKTDYALRMLSELVRSEGGIISVRAASEKDNIPYSFARSIQHDLVRAGIIESTRGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
           RGG+RL     + T+  VV+A +   +++ C     H+  CP    C    +  +A    
Sbjct: 61  RGGMRLAVDPRRTTVRQVVEAIQGPIYISSCDTVGGHEGPCPFRSECHYNPIWCEAERIL 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
            D     ++  +V        + + G
Sbjct: 121 RDYFDSVTLYQVVCEHK--HPMLDEG 144


>gi|153852854|ref|ZP_01994291.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
 gi|149754496|gb|EDM64427.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
          Length = 148

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L+  AI++      ++ IAE   IS  +L ++   L KAGIV++++G
Sbjct: 1   MKLSMKSRYGLRALIDLAINSKTEQVALNSIAERNKISPQYLEQVFASLRKAGIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L RP  +IT+  +++A E  + + +     +             V+ +  ++  
Sbjct: 61  SQGGYFLSRPPQEITVSSIIEALEGDYRIEDEELPKEGKYTGSVKAIQKLVIDRVNDSVT 120

Query: 120 DVLTQYSIECLVRNRSS 136
           ++L   ++  L +    
Sbjct: 121 EILQSVTLHDLEKEYQE 137


>gi|37520938|ref|NP_924315.1| hypothetical protein glr1369 [Gloeobacter violaceus PCC 7421]
 gi|35211933|dbj|BAC89310.1| glr1369 [Gloeobacter violaceus PCC 7421]
          Length = 159

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T+++DYGI ++ + A H +      ++A    +    + KIL+ L + G++ + RG +
Sbjct: 3   RITRQSDYGIVLVSHLAAHPERSFGAPELAAQVNLPLPIVRKILKLLAREGLLVSQRGVK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L  P   I++ DVV A E    + EC        C     C L    ++       
Sbjct: 63  GGYCLALPPAVISVADVVTALEGPIALTECIEDAPGGGCAHEAVCPLMPKWQRINAVIQQ 122

Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
            L+  S+  L+        + +
Sbjct: 123 ALSGISLSELIAPWPQELPVLS 144


>gi|322805498|emb|CBZ03062.1| predicted transcriptional regulator of cysteine synthase, Rrf2
           family [Clostridium botulinum H04402 065]
          Length = 145

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1   MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + +  IT  ++++A E    V E      ++  +  S     +  +   +  
Sbjct: 61  AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118

Query: 120 DVLTQYSIECLVR 132
            V+   ++E LV 
Sbjct: 119 RVVDSITLEDLVE 131


>gi|170759361|ref|YP_001786561.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169406350|gb|ACA54761.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 145

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YGI+ ++  AI++ +    +  I+E   ISE +L +I   L K  +++ ++G
Sbjct: 1   MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + +  IT  ++++A E    V E      ++  +  S     +  +   +  
Sbjct: 61  AQGGYILEKDSAHITAGEILRALEGDLSVVE-LNDDYLNNRMEKSIKTN-LWDRINESIE 118

Query: 120 DVLTQYSIECLVR 132
            V+   ++E LV 
Sbjct: 119 RVVDSITLEDLVE 131


>gi|103486976|ref|YP_616537.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977053|gb|ABF53204.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
           alaskensis RB2256]
          Length = 147

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR   + A H      +++ IAEA  I   FL  IL  + + G++ + RGR 
Sbjct: 2   LSQKTRYTIRAFQHLADHWGRGQVQLADIAEAQNIPPKFLTVILSEMAREGLLISQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG +L  P   I+  D+V+ T  S  +  C A     H  +C     C L S++ K  + 
Sbjct: 62  GGYQLALPPVDISYGDLVRLTRGSLALVPCAARNAHEHCKNCLPEAECRLRSLMLKVRDE 121

Query: 118 FFDVLTQYSIEC 129
              +L + ++  
Sbjct: 122 TASILDRITLAD 133


>gi|308172347|ref|YP_003919052.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605211|emb|CBI41582.1| putative transcriptional regulator [Bacillus amyloliquefaciens DSM
           7]
          Length = 167

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   + +     I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSESFLSKVFGKLSKAGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
            +GG RL +  + I+  DV++A E    + +C                      SC +  
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +A       L   ++  L
Sbjct: 121 VMLEAEEQMRKYLRNKTLAWL 141


>gi|239904872|ref|YP_002951610.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
 gi|239794735|dbj|BAH73724.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
           RS-1]
          Length = 150

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
                   +IA+   I + FL  IL  L + G V + RG+ GG  L RPA ++T+  V++
Sbjct: 22  GTGAAPAGEIADRQAIPKRFLEVILNQLRQGGFVASQRGKEGGFYLARPASEVTVGAVIR 81

Query: 81  ATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
             +      +C       DCPL G C    +  +A +A   V    S+  LV     I++
Sbjct: 82  FMDGPISPVDCHRERPGHDCPLQGGCVFRGLWDEARDALERVYDTRSLADLVAEDRRIRQ 141


>gi|301045949|ref|ZP_07193133.1| Rrf2 family protein [Escherichia coli MS 185-1]
 gi|300302032|gb|EFJ58417.1| Rrf2 family protein [Escherichia coli MS 185-1]
          Length = 112

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           ++       IS++ +   +S   + KI+  L +AG V  VRG+ GG+RL +PA  I I D
Sbjct: 3   SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           VV+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV
Sbjct: 63  VVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLV 112


>gi|229060442|ref|ZP_04197805.1| Transcriptional regulator [Bacillus cereus AH603]
 gi|228718825|gb|EEL70446.1| Transcriptional regulator [Bacillus cereus AH603]
          Length = 133

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    + I+ LD++ A E    + EC       C      C +  ++  A    
Sbjct: 61  PKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINELMLAAEEKM 113

Query: 119 FDVLTQYSIECLVRN 133
            + L    I  L + 
Sbjct: 114 EEELRNQKIVDLAKK 128


>gi|166032645|ref|ZP_02235474.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
           27755]
 gi|166027002|gb|EDR45759.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
           27755]
          Length = 148

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ YG+R L+  +++  +    +  IAE   IS  +L ++   L KAGIV++++G
Sbjct: 1   MKLSMKSRYGLRALIDLSVNFKNEQVALGGIAERNNISPQYLEQVFASLRKAGIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +PA+QITI +V++A E  + +         D           V+ K      
Sbjct: 61  SQGGYFLNKPAEQITISEVIEALEGDYRIEAEDVPEDCDYKAAPEAIQKLVIDKVNYELE 120

Query: 120 DVLTQYSIECL 130
            +LT  ++  L
Sbjct: 121 KILTGITLYDL 131


>gi|58581029|ref|YP_200045.1| hypothetical protein XOO1406 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425623|gb|AAW74660.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 152

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC  +H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|84622946|ref|YP_450318.1| hypothetical protein XOO_1289 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577995|ref|YP_001914924.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84366886|dbj|BAE68044.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188522447|gb|ACD60392.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 152

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC  +H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDITLVEIVEAMEGPLAITECSHNHS-QCGIAHTCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|298290870|ref|YP_003692809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927381|gb|ADH88190.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 149

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT R  YG++ +++ A           +IA+A  I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTNRGKYGLKAMLHLAAQPPGTSLGGQEIADANNIPKKFLDAILLDLRHAGMLRSRKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R  D I +  +++  +       C +        DC  VGSC +   + K  +A
Sbjct: 62  GGYTLARSIDDIRVGHIIRVLDGPLAPIGCASKSAYVPCQDCRDVGSCAVRITMTKVRDA 121

Query: 118 FFDVLTQYSIECLV 131
             +VL + S+  ++
Sbjct: 122 ISEVLDRMSLTDMM 135


>gi|172057245|ref|YP_001813705.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989766|gb|ACB60688.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 131

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IRVL+Y  ++ +   +I ++A+   IS+  L KI+  L K G++ + +GR
Sbjct: 1   MKMTRSTDYAIRVLLYATLNPNRLVQIQEVADHYAISKNHLMKIVHALSKFGLITSYQGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L +  ++IT+  VV   EE  ++ E   +++ +              +A   F +
Sbjct: 61  NGGFKLAKAPNEITLGQVVALFEEVSYLKEVLPTNEKETLKN----TRQAFDEAFLLFAN 116

Query: 121 VLTQYSIECLVR 132
            L  Y++E L +
Sbjct: 117 ALQAYTLEDLTK 128


>gi|313498421|gb|ADR59787.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           BIRD-1]
          Length = 179

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++          + +  +AE   + + +L K+   L +AG+V   
Sbjct: 1   MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RPA QI++LD+V A +    + +C         F          G+C + 
Sbjct: 61  EGVRGGFRLARPAAQISVLDIVNAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
           +V+  A     + L Q ++  L 
Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143


>gi|322437255|ref|YP_004219467.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
 gi|321164982|gb|ADW70687.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
          Length = 163

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKAG 52
            LTK+ DYG+  L Y A            +Y      IAEA  I    L KILQ L K G
Sbjct: 3   RLTKKADYGLMALKYLAEQAAATSGNAAHNYAQSAKDIAEAYHIPPQLLAKILQTLAKGG 62

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           ++ +  G  GG  L R A +I+  +V++A +   F+  C   H   C L   C +   LR
Sbjct: 63  LLVSHAGTNGGYALARSAAEISAFEVIRAIDGPLFITSCITIHGT-CDLDSHCTIKEPLR 121

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
           K  ++  D+L+   I  L+    +
Sbjct: 122 KVNDSIKDLLSAIRIADLIDPADA 145


>gi|15924616|ref|NP_372150.1| hypothetical protein SAV1626 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927206|ref|NP_374739.1| hypothetical protein SA1453 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283305|ref|NP_646393.1| hypothetical protein MW1576 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483871|ref|YP_041095.1| hypothetical protein SAR1706 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486459|ref|YP_043680.1| hypothetical protein SAS1562 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650508|ref|YP_186521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
 gi|82751225|ref|YP_416966.1| hypothetical protein SAB1496c [Staphylococcus aureus RF122]
 gi|87161573|ref|YP_494278.1| hypothetical protein SAUSA300_1583 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|148268107|ref|YP_001247050.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394175|ref|YP_001316850.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221740|ref|YP_001332562.1| hypothetical protein NWMN_1528 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979944|ref|YP_001442203.1| hypothetical protein SAHV_1613 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|221141104|ref|ZP_03565597.1| hypothetical protein SauraJ_05628 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253314983|ref|ZP_04838196.1| hypothetical protein SauraC_02182 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732283|ref|ZP_04866448.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733122|ref|ZP_04867287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006412|ref|ZP_05145013.2| hypothetical protein SauraM_08085 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425750|ref|ZP_05602174.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428410|ref|ZP_05604808.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431048|ref|ZP_05607427.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433734|ref|ZP_05610092.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436649|ref|ZP_05612693.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257793700|ref|ZP_05642679.1| Rrf2 family protein [Staphylococcus aureus A9781]
 gi|258411001|ref|ZP_05681281.1| Rrf2 family protein [Staphylococcus aureus A9763]
 gi|258420198|ref|ZP_05683153.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719]
 gi|258424052|ref|ZP_05686934.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258438199|ref|ZP_05689483.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299]
 gi|258443662|ref|ZP_05692001.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446869|ref|ZP_05695023.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300]
 gi|258448783|ref|ZP_05696895.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258450547|ref|ZP_05698609.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258453602|ref|ZP_05701580.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|262048619|ref|ZP_06021502.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
 gi|262051277|ref|ZP_06023501.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
 gi|269203252|ref|YP_003282521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282893129|ref|ZP_06301363.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8117]
 gi|282904206|ref|ZP_06312094.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
 gi|282906032|ref|ZP_06313887.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908946|ref|ZP_06316764.1| iron-sulfur cluster assembly transcription factor IscR
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911263|ref|ZP_06319065.1| iron-sulfur cluster assembly transcription factor IscR
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914431|ref|ZP_06322217.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916894|ref|ZP_06324652.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus D139]
 gi|282919400|ref|ZP_06327135.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282920174|ref|ZP_06327899.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A9765]
 gi|282924725|ref|ZP_06332393.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928260|ref|ZP_06335865.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A10102]
 gi|283770700|ref|ZP_06343592.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958386|ref|ZP_06375837.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024683|ref|ZP_06379081.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 132]
 gi|293503505|ref|ZP_06667352.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510523|ref|ZP_06669229.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293531063|ref|ZP_06671745.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294848656|ref|ZP_06789402.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A9754]
 gi|295406748|ref|ZP_06816553.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8819]
 gi|295428202|ref|ZP_06820834.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296275912|ref|ZP_06858419.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297207653|ref|ZP_06924088.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297590830|ref|ZP_06949468.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300911735|ref|ZP_07129178.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380777|ref|ZP_07363444.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13701424|dbj|BAB42718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247397|dbj|BAB57788.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204745|dbj|BAB95441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242000|emb|CAG40697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244902|emb|CAG43363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284694|gb|AAW36788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
 gi|82656756|emb|CAI81185.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|87127547|gb|ABD22061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741176|gb|ABQ49474.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946627|gb|ABR52563.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374540|dbj|BAF67800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722079|dbj|BAF78496.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253724072|gb|EES92801.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728878|gb|EES97607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271444|gb|EEV03590.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275251|gb|EEV06738.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278251|gb|EEV08893.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281827|gb|EEV11964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284000|gb|EEV14123.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257787672|gb|EEV26012.1| Rrf2 family protein [Staphylococcus aureus A9781]
 gi|257840151|gb|EEV64615.1| Rrf2 family protein [Staphylococcus aureus A9763]
 gi|257843909|gb|EEV68303.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719]
 gi|257845673|gb|EEV69705.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848243|gb|EEV72234.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299]
 gi|257851068|gb|EEV75011.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854444|gb|EEV77393.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300]
 gi|257858061|gb|EEV80950.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257861705|gb|EEV84504.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257864333|gb|EEV87083.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|259160914|gb|EEW45934.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
 gi|259163266|gb|EEW47825.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
 gi|262075542|gb|ACY11515.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
 gi|269941112|emb|CBI49498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313560|gb|EFB43955.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317210|gb|EFB47584.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282319381|gb|EFB49733.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus D139]
 gi|282321612|gb|EFB51937.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
 gi|282324958|gb|EFB55268.1| iron-sulfur cluster assembly transcription factor IscR
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327210|gb|EFB57505.1| iron-sulfur cluster assembly transcription factor IscR
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331324|gb|EFB60838.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590067|gb|EFB95149.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A10102]
 gi|282594522|gb|EFB99507.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A9765]
 gi|282595824|gb|EFC00788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
 gi|282764447|gb|EFC04573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8117]
 gi|283460847|gb|EFC07937.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470903|emb|CAQ50114.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ST398]
 gi|283790535|gb|EFC29352.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817308|gb|ADC37795.1| Iron-sulfur cluster regulator IscR [Staphylococcus aureus 04-02981]
 gi|290920331|gb|EFD97397.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095171|gb|EFE25436.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466887|gb|EFF09407.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus M809]
 gi|294824682|gb|EFG41105.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A9754]
 gi|294968495|gb|EFG44519.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8819]
 gi|295128560|gb|EFG58194.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296887670|gb|EFH26568.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297575716|gb|EFH94432.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298694906|gb|ADI98128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300885981|gb|EFK81183.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302333300|gb|ADL23493.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302751455|gb|ADL65632.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340653|gb|EFM06586.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312437906|gb|ADQ76977.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312830013|emb|CBX34855.1| rrf2 family protein (transcriptional regulator) family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129908|gb|EFT85898.1| hypothetical protein CGSSa03_02453 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315195526|gb|EFU25913.1| hypothetical protein CGSSa00_07665 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315198676|gb|EFU29004.1| hypothetical protein CGSSa01_09149 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140487|gb|EFW32341.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144026|gb|EFW35795.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323442831|gb|EGB00456.1| Rrf2 family protein [Staphylococcus aureus O46]
 gi|329314301|gb|AEB88714.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329727351|gb|EGG63807.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329728427|gb|EGG64864.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329733167|gb|EGG69504.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 140

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++I+  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVR 132
           DVL   +++ L  
Sbjct: 113 DVLDNTTLKYLAE 125


>gi|242373926|ref|ZP_04819500.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348480|gb|EES40082.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 140

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDNTTLKYLADYKETDEDL 133


>gi|162148975|ref|YP_001603436.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787552|emb|CAP57148.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 180

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           T+Y +  L++   + + P     +A+   I   F+ K+L  L KAG++E   G RGG RL
Sbjct: 8   TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            RPA+ I++L VV A E    +  C         F          G CG+ +V+ +A  A
Sbjct: 67  ARPAEDISVLAVVDAVEGRKSLFNCQEIRRRCALFDERPPRWATQGVCGIHAVMLRAEQA 126

Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143
               L + S+  L   VR+++ +  + +A
Sbjct: 127 MRQELARTSLADLARSVRDKAPLPFLGDA 155


>gi|73662442|ref|YP_301223.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494957|dbj|BAE18278.1| putative transcriptional regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 139

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++  L  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAEENNLSDLYLEQLVGTLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PAD+IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVR 132
           DVL   S++ L  
Sbjct: 113 DVLDNTSLKYLAE 125


>gi|221194912|ref|ZP_03567968.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
 gi|221184815|gb|EEE17206.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
           49626]
          Length = 179

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY +R+L     + D    +    +A  +   F   I   LV++ IV ++RG 
Sbjct: 1   MEVSRKTDYALRILSILVKNPDKVISVRDAVQASDVPYSFARVIQHDLVRSHIVSSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
           +GG+ L     +IT+LDVV+A +    +A C         CP   SC    V   A    
Sbjct: 61  QGGMSLAVDPKEITLLDVVEAIQGPILIAGCESAGPDNTPCPRKASCSFNPVWCNAEKIL 120

Query: 119 FDVLTQYSIECLVRN 133
                  ++  +V  
Sbjct: 121 RSYFASVTLSQIVEE 135


>gi|325915080|ref|ZP_08177408.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538692|gb|EGD10360.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 152

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A  +      S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARSGEVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A QIT++++V+A E    + EC   H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARDAGQITLVEIVEAMEGPLAITECSQDHS-QCGIAQTCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|300744304|ref|ZP_07073323.1| Rrf2 family protein [Rothia dentocariosa M567]
 gi|311112919|ref|YP_003984141.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
 gi|300380029|gb|EFJ76593.1| Rrf2 family protein [Rothia dentocariosa M567]
 gi|310944413|gb|ADP40707.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
          Length = 170

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +R++M  + +         +I+E        + K +  LV  G++E+ RG
Sbjct: 1   MRLTAFSDVSLRIMMLLSSLQEGEKLSTQRISEGVGTPYNHVAKSVAFLVNQGLLESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L     + T+  V+++TE    + EC      +CPL   C L +VL +A  AF+
Sbjct: 61  RSGGVLLSETGRKATVGQVLRSTEGDIPMIEC-EDENGNCPLDSFCRLRTVLARAREAFY 119

Query: 120 DVLTQYSIECL 130
             +    I  L
Sbjct: 120 ASVDDVVISEL 130


>gi|291562421|emb|CBL41237.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SS3/4]
          Length = 147

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 13  VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +++  A H +D    +  IA    +S+ +L +I+  L K G++ T RG +GG +L +   
Sbjct: 1   MVIDLAEHADDGFISLKDIAARQGLSKKYLEQIVPLLNKTGMLSTTRGYQGGYKLAKSPS 60

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           + T+  +++ TE S     C       C    +C    V         D L   +I+ ++
Sbjct: 61  ECTVGAILQTTEGSLAPVSCLEHTPNPCERCSACDTLPVWEGLNRVIMDYLDGITIQTIL 120

Query: 132 RNRSSIKK 139
             +  +++
Sbjct: 121 DQKHELEE 128


>gi|146276848|ref|YP_001167007.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555089|gb|ABP69702.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 189

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A          RI  IA      + FL  IL  +  AG + ++RG
Sbjct: 25  ITQKMKYALKALMVLAEEHSGEQRALRIEDIAARSETPKRFLEHILLDIRNAGYIASIRG 84

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   QI + D+++  +       C +        DC    SC +  V  +  
Sbjct: 85  RSGGYLLIKEPAQIPLSDLLRMIDGPIAPLPCLSRRSYQRCDDCTDETSCRIRKVFAEIF 144

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LVR  ++ ++I  A
Sbjct: 145 WSYLLLIESLTLADLVRTPAASEQILAA 172


>gi|328552169|gb|AEB22661.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
          Length = 167

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   + +     I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
            +GG RL +  + I+  DV++A E    + +C                      SC +  
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +A       L   ++  L
Sbjct: 121 VMLEAEEQMRKYLRNKTLAWL 141


>gi|317153664|ref|YP_004121712.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943915|gb|ADU62966.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 145

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R+ Y  R+L+  A+H  D P R S +A+   I+  F+ +I++PL +AG+V +VRG
Sbjct: 1   MKLSARSRYAARLLLALAMHKGDGPVRTSDLADRTGITAQFIEQIIRPLKQAGMVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    IT+ ++V+  E S  +A C       C   G C   +   +A  A  
Sbjct: 61  ASGGHLLDRQPAAITLGEIVRTMEGSANIASCLDCDTA-CDRTGDCLTRTAWERASRAME 119

Query: 120 DVLTQYSIECLV 131
             L   ++  L+
Sbjct: 120 RELDAITLADLM 131


>gi|149908898|ref|ZP_01897558.1| Rrf2 family protein [Moritella sp. PE36]
 gi|149808172|gb|EDM68113.1| Rrf2 family protein [Moritella sp. PE36]
          Length = 148

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +T  TD+GIR LMY + +     +  +++AE    S   + K++  L     +E+ RG+
Sbjct: 6   KITTYTDFGIRTLMYLSTLPKGQRSSSAEVAEVYQASRNHIAKVIAHLSSLNYIESSRGK 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L + A +I I  +V+A E +    + F ++  D  LV +  L ++L+  + AF  
Sbjct: 66  NGGIWLAKSASEINIGQLVRALENNL---KGFDNNTQDSELVPTYQLKNLLQTGIEAFLK 122

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            L QYS+  L+  +   + +
Sbjct: 123 TLDQYSLADLLDEQREFESL 142


>gi|163940519|ref|YP_001645403.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229012026|ref|ZP_04169205.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
 gi|163862716|gb|ABY43775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
 gi|228749114|gb|EEL98960.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
          Length = 133

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    + I+ LD++ A E    + EC       C      C +  V+  A    
Sbjct: 61  PKGGYSLSSNWEDISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINEVMLAAEEKM 113

Query: 119 FDVLTQYSIECLVRN 133
            + L    I  L + 
Sbjct: 114 EEELRNQKIVDLAKK 128


>gi|325971575|ref|YP_004247766.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta sp. Buddy]
 gi|324026813|gb|ADY13572.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy]
          Length = 135

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ +  Y ++ ++Y A   +    I  I+EA  IS  +L +++ PL +AG+V+  RG 
Sbjct: 1   MKLSTKGRYSLQTMVYLATCREN-CSIRSISEATGISSGYLEQLMIPLRRAGLVQAERGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL +    IT  +V+ A+E  F    C      +CP   +C    +     +   D
Sbjct: 60  QGGYRLAKSG--ITCAEVLSASEGDFEPVPC-----RNCPRTDACKTHQIWTMLQSTVVD 112

Query: 121 VLTQYSIECLVRN 133
             +Q +I+ L  +
Sbjct: 113 FTSQVTIDELASH 125


>gi|226309029|ref|YP_002768989.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229491718|ref|ZP_04385539.1| transcriptional regulator [Rhodococcus erythropolis SK121]
 gi|226188146|dbj|BAH36250.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
           PR4]
 gi|229321399|gb|EEN87199.1| transcriptional regulator [Rhodococcus erythropolis SK121]
          Length = 149

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A +  D       +A+   +S     K++  L + GIV T RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVLDADASPSTRDVAQQLNVSYSHATKVVTRLGELGIVTTRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       TI  + +  E    V +C       CPL G C L S LR+A  AFF
Sbjct: 61  RGGGLSITELGRTATIGWLARRLEGPGEVVDCEGDK--PCPLRGGCLLRSALREAQEAFF 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +IE ++R  S 
Sbjct: 119 VSLDAVTIEDVIRQPSK 135


>gi|225568451|ref|ZP_03777476.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
           15053]
 gi|225162679|gb|EEG75298.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
           15053]
          Length = 143

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + V+   A+H+D  +   +  IAE   +SE +L +I++ L  A I+++VR
Sbjct: 1   MKISTKGIYALEVVADLALHSDAAHLESLKNIAERRKLSEKYLERIVKALKDAHIIKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  + +   Q+T+ +V+KA E      +C            SC             
Sbjct: 61  GAYGGYCMAKEPQQLTVREVLKAVEGELAPVDCLTQESSCGIDCRSCPTRDTWAALWQTI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             V  + ++  +VR    I K
Sbjct: 121 AGVADEVTVGDIVRAAEKIDK 141


>gi|329904110|ref|ZP_08273676.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548132|gb|EGF32848.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 147

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 11  IRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A+  +  P  +S I++   IS  +L ++   L +  IVE+VRG  GG  L R 
Sbjct: 1   MTAMIDLALRQSGGPVTLSGISQRQEISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARR 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKALNAFFDVLTQ 124
           A+ +T+ D++ A +E     +C    K +C    +     C    +     +   + L  
Sbjct: 61  AEDVTVADIIIAVDEPLDSTQC--GGKENCRKSTAENGTRCMTHDLWSTLNSKMVEYLDS 118

Query: 125 YSIECLVRNRSS 136
            S++ LV  +  
Sbjct: 119 VSLKDLVDQQRQ 130


>gi|222086332|ref|YP_002544865.1| hypothetical protein Arad_2848 [Agrobacterium radiobacter K84]
 gi|221723780|gb|ACM26936.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 156

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       I+ IA    I + FL  IL  L  AG++ + +G  
Sbjct: 2   LTKKGKYGLKALVDLARLAPGETAFINDIASRNNIPKKFLDTILLELRNAGVLRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R A +I I  V++  +       C +        DC     C +   + +  +A
Sbjct: 62  GGYSLSRLASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPERCHVRRSMTEVRDA 121

Query: 118 FFDVLTQYSIECLVR 132
             D+L   ++E  V 
Sbjct: 122 IADILDNMTLEQFVA 136


>gi|152983079|ref|YP_001352722.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151283156|gb|ABR91566.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 185

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++   +YG+  L++    +       +  +AE   +   FL K+   LVKAG+V +  G 
Sbjct: 4   ISSGVEYGLHCLLFLTRSSAAVEEASVRDLAELQGVPHDFLAKLFTKLVKAGLVVSTEGV 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
           +GGVRL R  ++IT+ DV+ A +    + +C         F S+       G C + +V+
Sbjct: 64  KGGVRLARLPERITVHDVIVAIDGDKSLFDCREIRGRCAVFDSNAPAWATRGVCSIDAVM 123

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
           + A  A    L Q+++  L + 
Sbjct: 124 QLAEKAMRAELKQHTLADLAQR 145


>gi|108805410|ref|YP_645347.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766653|gb|ABG05535.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 156

 Score =  130 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 1   MHL--TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  +    Y +R L+Y A  N        I+    I    L ++L  L +A +V +  
Sbjct: 15  MRLELSSEGRYALRALIYLARVN-RRVTADTISADTGIPRRLLARVLAKLSRARLVRSSE 73

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG  L R  +QIT+ + V+A E  F V  C    +  C     C +     +   A 
Sbjct: 74  GRGGGSELARSPEQITLREAVEAIEGPFEVTRCIMEERA-CGTGAPCAMHEAWEEGQEAI 132

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++   V  
Sbjct: 133 LDYLQGQTLSEFVSQ 147


>gi|269926805|ref|YP_003323428.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790465|gb|ACZ42606.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 178

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + R +YG+R++M  A      P  ++++AE   +   +L +++  L + G+V + RG +
Sbjct: 9   FSIRAEYGVRLMMMLAREYGKGPLSLARVAEEELLPLPYLEQLIANLRRDGLVVSHRGAK 68

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
           GG  L +P ++IT+ +++++ E       C    + +  C     C    +  +  +A  
Sbjct: 69  GGYELAKPPEEITMGEIIRSLEGPIVPMVCATEDESEITCYKGDYCSAQILWSRVRDAVR 128

Query: 120 DVLTQYSIECLVR 132
            VL    +  +  
Sbjct: 129 QVLDSTKLSEIAN 141


>gi|253681092|ref|ZP_04861895.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
 gi|253562941|gb|EES92387.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
          Length = 139

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +R+++Y              I+E   I   FL KIL+ L +AGIVE+ RG
Sbjct: 1   MKITQEVDYALRIVLYLCKLGFGEKIEAKFISEHENIPIRFLLKILRKLKQAGIVESFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
             GG  L +    I+  D++ A +   ++  C    K  C L  +  C + + L      
Sbjct: 61  INGGYALNKYPSDISFKDIILAIDGPIYMNRCLYDPK-SCNLNRANKCVVHNALASVQTT 119

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   + + L+     +
Sbjct: 120 LIRKLESITFKNLLDEEYKL 139


>gi|300024335|ref|YP_003756946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526156|gb|ADJ24625.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 184

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +Y +  L++     +       +A+   IS  FL KI   L KAGIVE   G RGG RL
Sbjct: 8   VEYALHCLLWLTEPVEQRPSSRDLADLQGISPAFLAKIFAKLEKAGIVEASGGIRGGYRL 67

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            RP  +I++L+VV A E S  + +C         F +        G C + +V+ +A   
Sbjct: 68  ARPTSKISVLNVVDAVEGSKPLFDCQEVRGRCALFENKPPKWATKGVCEIHAVMLRAEKV 127

Query: 118 FFDVLTQYSIECLVRNRS 135
             D L++ ++  L   + 
Sbjct: 128 LRDELSKTTLASLSDGKR 145


>gi|294629169|ref|ZP_06707729.1| Rrf2 family protein [Streptomyces sp. e14]
 gi|292832502|gb|EFF90851.1| Rrf2 family protein [Streptomyces sp. e14]
          Length = 155

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M ++ R DY +R ++  A+      + P +   IA    IS  FL  IL  L +AG+V +
Sbjct: 1   MRISARADYAVRAVLELAVRHGDAPEAPVKAETIAAEQGISHKFLEGILGDLRRAGVVTS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG  GG  L RPA  IT+ DV++A +             +         L  +      
Sbjct: 61  RRGGGGGYALARPASAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRA 119

Query: 117 AFFDVLTQYSIECLV 131
               +L   ++  + 
Sbjct: 120 NVRRILEGVTLADIA 134


>gi|288906317|ref|YP_003431539.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306832374|ref|ZP_07465527.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325979331|ref|YP_004289047.1| BadM/Rrf2 family transcriptional regulator [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733043|emb|CBI14624.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304425414|gb|EFM28533.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325179259|emb|CBZ49303.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 133

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ R  Y IRV++    +N  +   +  IA+   IS+ +L  I++ +V   ++    GR 
Sbjct: 2   ISTRGRYAIRVMIDLVENNNGHYIPLKDIAKRQEISKKYLEIIVKEMVAGELLIGASGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R  ++ T+ +++   E +     C A    DCP    C    +  +  N   D 
Sbjct: 62  GGYKLRRKPEEYTVGEILDLMEGTLSSVACLADKSFDCPRKDKCKTLPMWTEYDNLVHDF 121

Query: 122 LTQYSIECLVRN 133
               +I  LV N
Sbjct: 122 FYGKTILDLVNN 133


>gi|188990792|ref|YP_001902802.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732552|emb|CAP50746.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
           campestris pv. campestris]
          Length = 152

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A  +D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  ++ 
Sbjct: 122 LRRVTLAQMLH 132


>gi|88799892|ref|ZP_01115464.1| predicted transcriptional regulator [Reinekea sp. MED297]
 gi|88777323|gb|EAR08526.1| predicted transcriptional regulator [Reinekea sp. MED297]
          Length = 150

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A++    P  ++ I+    IS  +L ++   L K G+V +VRG  GG RL      
Sbjct: 1   MLDLALNEQSGPINLADISHRQGISLSYLEQLFSKLRKQGLVSSVRGPGGGYRLGDERSA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I++  VV A  ES    +C    K  C     C    + +       D L   S++ LV 
Sbjct: 61  ISVAAVVDAVSESMDATKC--QGKSGCQGGEICLTHHLWQDLSEQIHDFLEDISLQDLV- 117

Query: 133 NRSSIKKI 140
           +RS I+ +
Sbjct: 118 DRSEIRSV 125


>gi|113867763|ref|YP_726252.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113526539|emb|CAJ92884.1| putative transcriptional regulator [Ralstonia eutropha H16]
          Length = 185

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            ++   +Y +  L+Y            +  +AE   +   FL K+   L KA +V    G
Sbjct: 3   QISTGVEYSLHCLLYLTHSQSAVEEASVRDLAELQGVPHDFLAKLFTKLAKAKLVVATEG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
            +GG RL RPA+ IT+ DVV A +    + +C         F          G C + +V
Sbjct: 63  IKGGFRLARPANHITVHDVVVAIDGEKPLFDCLEIRGRCAVFNDDAPGWATRGVCSIQAV 122

Query: 111 LRKALNAFFDVLTQYSIECL 130
           ++ A  A    L ++++  L
Sbjct: 123 MQAAEKAMRAELKRHTLADL 142


>gi|148253999|ref|YP_001238584.1| BadM/Rrf2 family transcriptional regulator [Bradyrhizobium sp.
           BTAi1]
 gi|146406172|gb|ABQ34678.1| transcriptional regulator, BadM/Rrf2 family [Bradyrhizobium sp.
           BTAi1]
          Length = 158

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG++ L++ A +        + IAE   IS+ FL  IL+ L +AG+V   +G  
Sbjct: 2   LSAKGKYGLKALIHLASLEPGEQALSADIAETNNISKKFLDAILRELRQAGLVRAKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L RPA  I +   ++  +       C +        DC    +C +   + +  +A
Sbjct: 62  GGYALARPARSIKVGQAIRHLDGPLAPIACASRSAYRPCRDCRDPKACAVRLTMTQVRDA 121

Query: 118 FFDVLTQYSIECLVRNRS 135
              VL Q ++  L     
Sbjct: 122 ISGVLDQMTLYELAEQER 139


>gi|298368426|ref|ZP_06979744.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282429|gb|EFI23916.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 148

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +A +VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAQLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+      C    K +C     C    +         
Sbjct: 61  PGGGYILAAPASEINIAQIIAAAEDRLDATRC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRS 135
           D L+  +++ ++  ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134


>gi|295836021|ref|ZP_06822954.1| Rrf2 family protein [Streptomyces sp. SPB74]
 gi|295825840|gb|EFG64521.1| Rrf2 family protein [Streptomyces sp. SPB74]
          Length = 161

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ + DY  R L+  A   ++P     +A +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MQISAKADYAARALVELASRPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++I++LDVV+A +             +  P   +  L  + R       +
Sbjct: 61  EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGTVPAHLAYP-GPAAALPGLWRTLEERARE 119

Query: 121 VLTQYSIECLVRNRSS 136
           +L   S+  L R  + 
Sbjct: 120 LLGAVSLASLAREAAQ 135


>gi|222099072|ref|YP_002533640.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
 gi|221571462|gb|ACM22274.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
          Length = 138

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVRGR 60
            T R++Y +R+++  A   D    +++I E     +   F  KIL  L K+GIVET RG+
Sbjct: 2   FTMRSEYALRLMIVMAKEYDRYLSMTEILEKAKNSVPREFAEKILYTLRKSGIVETKRGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RP  +I + D++   +    V          CP    C + S+ ++       
Sbjct: 62  TGGYRLARPPKEIRVSDIIFLLDRKARVF----FDMPGCPDELDCVIRSLWKRVEEEIEK 117

Query: 121 VLTQYSIECLVRNRSS 136
           VL   ++E LV+ +  
Sbjct: 118 VLGSVTLEDLVKEQEE 133


>gi|104781179|ref|YP_607677.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110166|emb|CAK14873.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 178

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++            +  +AE   + + +L K+   L +AG+V   
Sbjct: 1   MSLYSAGVEYGIHCLLFLVDERGDSREASVRDLAELQGVPQEYLAKVFTKLARAGLVVAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG RL RP+D+IT+LD+V A + +  + +C         F          G+C + 
Sbjct: 61  EGVRGGFRLARPSDEITVLDIVTAIDGAKKIFDCREIRERCAVFEGSAPGWATEGTCAIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  L R 
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145


>gi|89897247|ref|YP_520734.1| hypothetical protein DSY4501 [Desulfitobacterium hafniense Y51]
 gi|219666882|ref|YP_002457317.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89336695|dbj|BAE86290.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537142|gb|ACL18881.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 126

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ TDY +  +++ A +  +    + ++AE   +S  +L KIL  LVK G++ +  G
Sbjct: 1   MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    ++I+  D+++A E    + +C  +   +      C +  V+  A     
Sbjct: 61  VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPE------CSIKKVMLAAEKNME 114

Query: 120 DVLTQYSIECLV 131
           + L    I  LV
Sbjct: 115 EELRTKKISELV 126


>gi|149277390|ref|ZP_01883531.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
           BAL39]
 gi|149231623|gb|EDM37001.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
           BAL39]
          Length = 145

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y I+ L+    +  + P +I ++AE   I   FL +IL  +  AG + + +G  
Sbjct: 2   LSKKTKYAIKALVALGKNVGNPPMQIVKLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + A  I + D+++ T+    +  C    F     +C    +CG+        NA
Sbjct: 62  GGYSLNKDAADIFLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRNA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL Q SI  ++   + 
Sbjct: 122 TLKVLAQTSIADVIGRETD 140


>gi|239834406|ref|ZP_04682734.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239822469|gb|EEQ94038.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 232

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 84  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 143

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALNAF 118
           GG  L RPA++I I ++++A + +     C +       D      C +  ++     A 
Sbjct: 144 GGFCLARPANEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRQMMLDVREAI 203

Query: 119 FDVLTQYSIEC 129
             VL   ++  
Sbjct: 204 ASVLDHRTLAD 214


>gi|296535637|ref|ZP_06897815.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296264032|gb|EFH10479.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 151

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+  + P  +++IA+A  +S  +L ++   L +AG+V++ RG  GG RL RPA+ I I  
Sbjct: 24  AVTRERPVSLAEIAQAQLLSVAYLEQLFARLRRAGLVDSARGPGGGYRLARPAEAIAIGT 83

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +++A +E      C       C     C    +  +        L   ++  +V  R
Sbjct: 84  IIEAVDEPISATRC-EEGSPGCLAGNRCLTHDLWHELGEQIRLFLENVTLADVVEQR 139


>gi|160942312|ref|ZP_02089621.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434869|gb|EDP12636.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
           BAA-613]
          Length = 179

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R L+Y A   +  +   +I +A  I+ +F+ K+L+ L  AG V +++G 
Sbjct: 26  MQLTMTTDYALRCLLYLAG-KEGVSSSPEIGKAVGINNIFVQKVLRVLRDAGFVSSLKGG 84

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +  ++I +LD++   E++  +  C  +    C    +C +     +       
Sbjct: 85  TGGYWLAKKPEEIVLLDIILLFEKTMKINRCLEAEGC-CERYETCPMHVYYAEVQETLEG 143

Query: 121 VLTQYSIECLVRNRSSIKK 139
              Q +++ ++ +    +K
Sbjct: 144 YFGQATLQDVINHGKIKRK 162


>gi|223044133|ref|ZP_03614172.1| Rrf2 family protein [Staphylococcus capitis SK14]
 gi|314933791|ref|ZP_07841156.1| Rrf2 family protein [Staphylococcus caprae C87]
 gi|222442527|gb|EEE48633.1| Rrf2 family protein [Staphylococcus capitis SK14]
 gi|313653941|gb|EFS17698.1| Rrf2 family protein [Staphylococcus caprae C87]
          Length = 140

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PAD+IT  D+++  E      E   S               +  +  ++  
Sbjct: 61  AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDSVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDNTTLKYLADYKETNEDL 133


>gi|119493246|ref|ZP_01624086.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
           PCC 8106]
 gi|119452719|gb|EAW33897.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
           PCC 8106]
          Length = 147

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++  +  P  ++ IA    +   +L K+L  + +AG+VE+VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQQEFGPTSVNAIAHRQKLPAPYLEKLLIEMRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   +I++  +++A  ES         H+ +  L       ++  +      
Sbjct: 61  SQGGYQLSRSPAKISLGQILEAVGESIEP---LPRHQPNAELAEDWVTFTLWNRLHQKLK 117

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 118 EALYSISLEDL 128


>gi|254521010|ref|ZP_05133065.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
 gi|219718601|gb|EED37126.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
          Length = 151

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG R
Sbjct: 3   RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I++ +VV+A E    + EC   H   C +   CG  S  R   +   + 
Sbjct: 63  GGYRLTRPALEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121

Query: 122 LTQYSIECLV 131
           L   ++  ++
Sbjct: 122 LRDVTLAQIL 131


>gi|166711249|ref|ZP_02242456.1| hypothetical protein Xoryp_07195 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 152

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  I+++++V+A E    + EC  +H   C +  +CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDISLVEIVEAMEGPLAITECSQNHS-QCGIAHTCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L   ++  +++
Sbjct: 122 LRHVTLAQMLQ 132


>gi|148555827|ref|YP_001263409.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501017|gb|ABQ69271.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 134

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY + +L   A H        + +++   +      K++  L +AG++ + RG
Sbjct: 1   MRLSSLADYAVVMLSAAARHGAGERLTATLLSDETGVPLPTAQKLMGRLAQAGLLASARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R    I++ D+V+A E    +  C   H+ DC L  +C +        +   
Sbjct: 61  TGGGFRLARDPGAISLADIVEAVEGPIAMTACVDDHRHDCGLESACRVKPHWGVVNDTIR 120

Query: 120 DVLTQYSIECLVR 132
             L   S+  L R
Sbjct: 121 GALGGVSLATLSR 133


>gi|296447784|ref|ZP_06889698.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254703|gb|EFH01816.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 144

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +  YG++ L++ A           IA+   I   FL  IL  L  AGI+ + +G+ G
Sbjct: 2   LSNKAKYGLKALIHLAGAEGQ-CLAGDIAKENNIPRKFLDAILVELRNAGIINSKKGKHG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L RPA+++T+  +++  +       C +        DCP   +C +  ++     + 
Sbjct: 61  GYLLARPAEKVTVGQIIRILDGPLAPIACASKTAYQRCADCPDEDACAIHDIMLDVRESI 120

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
             +L + SI  L    S   ++ 
Sbjct: 121 ALILDRTSIASLRERGSREARVL 143


>gi|325263739|ref|ZP_08130472.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324030777|gb|EGB92059.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 142

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + ++   A+H+  ++   +  IA    +SE +L +I++ L + GIV++VR
Sbjct: 1   MKMSTKGQYALEIVADLAMHSSKEHLESLKNIANRRDLSEKYLERIIKALREKGIVKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L +  + + +L+V+ A E       C           G C   +      +  
Sbjct: 61  GAYGGYCLEKAPEDLMVLEVLTAVEGELTPVHCLTRESNCGIDCGLCPTRNTWSDMWSVM 120

Query: 119 FDVLTQYSIECLVR 132
              + Q ++  +VR
Sbjct: 121 KGAVEQVTVADIVR 134


>gi|163790053|ref|ZP_02184488.1| transcriptional regulator [Carnobacterium sp. AT7]
 gi|159874753|gb|EDP68822.1| transcriptional regulator [Carnobacterium sp. AT7]
          Length = 137

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A+  N+   R+  +A+   IS  +L KIL  L KAG++ +  G
Sbjct: 1   MKYSKATNYALHSMVHLAMESNNEAVRVEDLAKHQRISPTYLSKILTKLAKAGLITSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL    ++ T LD+++A E    +  C  SH         C +   +  A +   
Sbjct: 61  VKGGYRLLLSPEKCTFLDIIQAIEGQESLLNCTMSHDGKWNR--DCLIERAVADAEDKMK 118

Query: 120 DVLTQYSIECLVRN 133
           D L   +I  ++  
Sbjct: 119 DELAHKTIAGILNQ 132


>gi|284050305|ref|ZP_06380515.1| transcriptional regulator, BadM/Rrf2 family protein [Arthrospira
           platensis str. Paraca]
 gi|291569875|dbj|BAI92147.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 147

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  A + +  P  +  IA    I   +L K+L  + + G+V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLAMLGSSGPVSVRAIASRQNIPAPYLEKLLIEMRRRGLVISVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  P  QI++  +++A  E+       ++H+ D   +      ++  +      
Sbjct: 61  SQGGYKLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEQIEDWVTFTLWNRLHEKLK 117

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 118 EALYSISLEDL 128


>gi|325104343|ref|YP_004273997.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324973191|gb|ADY52175.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 148

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+T Y ++ LM  A + +  P  I++IA+   + + FL  IL  L +  I+ +  G  
Sbjct: 2   LTKKTKYAVKALMALARNGENKPMLIAEIAKQEGLPKRFLEAILLDLKRGQILGSRMGAG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA +I +++V++  +    +  C    F     +C    +C +  ++ +  +A
Sbjct: 62  GGYFLVKPASEIMVVNVIRILDGPIALLPCVSLNFYQRCEECVDEVTCSIREMMGRVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
             +++   SI  LV     +    + G
Sbjct: 122 SIEIMGHTSIADLVAKEKELGGNLSEG 148


>gi|254491784|ref|ZP_05104963.1| rrf2 family protein (putative transcriptional regulator)
           [Methylophaga thiooxidans DMS010]
 gi|224463262|gb|EEF79532.1| rrf2 family protein (putative transcriptional regulator)
           [Methylophaga thiooxydans DMS010]
          Length = 135

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  +++       ++ I+E   IS  +L ++   L K G+V + RG  GG RL R A+ 
Sbjct: 1   MLDLSLNYGLGAITLADISERQGISLSYLEQLFARLRKQGLVSSSRGPGGGYRLSRSAED 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           IT+LDV+ A +E     +C    + +C     C    + +   +     L   ++  +V
Sbjct: 61  ITVLDVISAVDEKVDSTQC--EGRKNCHGDEKCLSHELWQSLSDQIRVYLDGITLAEVV 117


>gi|294788961|ref|ZP_06754201.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
           muelleri ATCC 29453]
 gi|294483063|gb|EFG30750.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
           muelleri ATCC 29453]
          Length = 148

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  D+  +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L + ADQI I  ++ A E+      C  S K +C     C   ++     +   
Sbjct: 61  PGGGYILGKAADQINIAQIIAAAEDCLDATLC--SGKANCQSGSPCLTHNLWANLNHTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L+  ++  L+     
Sbjct: 119 SYLSSITLASLLEQPPP 135


>gi|21232196|ref|NP_638113.1| hypothetical protein XCC2765 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767675|ref|YP_242437.1| hypothetical protein XC_1348 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113952|gb|AAM42037.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573007|gb|AAY48417.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 152

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A  +D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASAITLVEIVEAMEGPLAITECSQDHS-QCGIAHQCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  ++ 
Sbjct: 122 LRRVTLAQMLH 132


>gi|218516163|ref|ZP_03513003.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 123

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A    D P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121


>gi|228908509|ref|ZP_04072350.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|228851156|gb|EEM95969.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
          Length = 133

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    +  +AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTMLFLAKATPNKLVSVHHLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L    + I+ LD++ A E    + +C    K        C +   +  A     
Sbjct: 61  PKGGYSLSNKWEDISFLDIIHAIEGKTSLFDCCLHDKPG------CLINEAMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVDLAQK 128


>gi|331270571|ref|YP_004397063.1| rrf2 family protein [Clostridium botulinum BKT015925]
 gi|329127121|gb|AEB77066.1| rrf2 family protein (putative transcriptional regulator)
           [Clostridium botulinum BKT015925]
          Length = 139

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +R+++Y              IAE   I   FL KIL+ L ++GIVE+ RG
Sbjct: 1   MKITQEVDYALRIVLYLCKLGFGEKIEAKFIAEHENIPIRFLLKILRKLKQSGIVESFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
             GG  L +    I+  D++ + +   ++  C    K  C L  S  C + + L      
Sbjct: 61  INGGYALNKYPADISFKDIIISIDGPIYMNRCLYDPK-SCNLNRSNRCVVHNALASIQTT 119

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   + + L+     +
Sbjct: 120 LITKLESITFKDLLDEYYKL 139


>gi|170076761|ref|YP_001733399.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7002]
 gi|169884430|gb|ACA98143.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7002]
          Length = 147

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   +   +L K+L  + +AGI+ +VRG
Sbjct: 1   MKLTTRGHYSVKALLDISLQPGYGPTSVKAIAKRQNLPAPYLEKLLIEMRRAGILRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L    + I++  +++A  E+         H             S+ ++      
Sbjct: 61  AQGGYQLLSKPEDISLGQILQAIGETIEPLPHHEPHPDQ---AEDWVTFSLWQRLHQKLQ 117

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L   ++  L  +  S K
Sbjct: 118 EALYNITLADLYYDARSWK 136


>gi|229488650|ref|ZP_04382516.1| transcriptional regulator [Rhodococcus erythropolis SK121]
 gi|229324154|gb|EEN89909.1| transcriptional regulator [Rhodococcus erythropolis SK121]
          Length = 154

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +  +  ++ P   +++AE   +S+ +L K L+ L  AG+V    GR
Sbjct: 1   MKLSGGVEWSLHCCVVLS-QSEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R  ++IT+LDVV+A + +     C         A+    C    +CG+  V+ 
Sbjct: 60  DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142
            A  A+   L+  +I  L    +  +++KI  
Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKILT 149


>gi|21243661|ref|NP_643243.1| hypothetical protein XAC2934 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294626272|ref|ZP_06704875.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664777|ref|ZP_06730103.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21109239|gb|AAM37779.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|292599418|gb|EFF43552.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605464|gb|EFF48789.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 152

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|163858175|ref|YP_001632473.1| RF2 family protein [Bordetella petrii DSM 12804]
 gi|163261903|emb|CAP44205.1| probable RF2 family protein [Bordetella petrii]
          Length = 162

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +AG+VET  G
Sbjct: 1   MILKSQVEWALHSCAILAGLPPGRYLSTKALAELHGVPKEYLSKALQALSQAGLVETTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
             GG RL RP  +IT LD+V+A E       C        C   G      C +  V+ +
Sbjct: 61  PSGGYRLARPGSEITFLDIVEAVEGRASTFACNNIRVNNPCRPSGHCDSKPCAIARVMWR 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+ + L + ++  ++ 
Sbjct: 121 ADEAWRNALREVTLADVID 139


>gi|78048634|ref|YP_364809.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037064|emb|CAJ24809.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 152

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A   D     S++AE   +    + KIL+PL +AG+VE +RG  
Sbjct: 3   RVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGVH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A  IT++++V+A E    + EC   H   C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLARAASDITLVEIVEAMEGPLAITECSQDHS-QCGIAQRCGVRSNWRLINDVVGDA 121

Query: 122 LTQYSIECLVR 132
           L + ++  +++
Sbjct: 122 LRRVTLAQMLQ 132


>gi|119385536|ref|YP_916592.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119375303|gb|ABL70896.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 159

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 3   LTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++++T Y I+ LM  A           I +IA+     + FL  I+  L  AG V + RG
Sbjct: 13  ISQKTKYAIKALMALADEVAAGGNALTIEEIAQRSGAPKRFLEHIMLELRNAGYVGSRRG 72

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   +I+I ++++  +       C +        DC    +C L  +  +  
Sbjct: 73  RAGGYVLIKRPKEISIGELLRQVDGPIAPLPCLSRRSYQRCEDCTDEATCRLRRMFGQVF 132

Query: 116 NAFFDVLTQYSIECLVRN 133
            ++  ++   ++E LV  
Sbjct: 133 WSYLLLIESLTLEDLVAE 150


>gi|222151511|ref|YP_002560667.1| hypothetical protein MCCL_1264 [Macrococcus caseolyticus JCSC5402]
 gi|222120636|dbj|BAH17971.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 140

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+ +++  A          +  IAE   +S+L+L +++ PL  AG++++VR
Sbjct: 1   MKISTKGRYGLTLMISLAKRYDKGETVSLKTIAEENHLSDLYLEQLVGPLRNAGLIKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG +L +   ++T  ++++  E      E                   +     +A 
Sbjct: 61  GARGGYKLMKHPKEVTTSEIIRLLEGPITPVEGIEDEPP--------AQKQLWIDIRDAV 112

Query: 119 FDVLTQYSIECLVRNRSS 136
             VL + ++  L+  + S
Sbjct: 113 KKVLDETTLYDLMHYKES 130


>gi|224476724|ref|YP_002634330.1| hypothetical protein Sca_1238 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421331|emb|CAL28145.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 139

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PAD+I   D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPADEIKAGDIIRLLEGPISFVESIDSEPP--------AQKELWLRMRDAVR 112

Query: 120 DVLTQYSIECLVR 132
           +VL   +++ L  
Sbjct: 113 EVLDGTTLKYLAE 125


>gi|190573183|ref|YP_001971028.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|190011105|emb|CAQ44714.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
          Length = 151

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG R
Sbjct: 3   RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I++ +VV+A E    + EC   H   C +   CG  S  R   +   + 
Sbjct: 63  GGYRLTRPAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121

Query: 122 LTQYSIECLV 131
           L   ++  ++
Sbjct: 122 LRDVTLAQIL 131


>gi|116695452|ref|YP_841028.1| iron sulfur cluster assembly transcriptional regulator (SufA)
           [Ralstonia eutropha H16]
 gi|113529951|emb|CAJ96298.1| iron sulfur cluster assembly transcriptional regulator (SufA)
           [Ralstonia eutropha H16]
          Length = 156

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDYG  ++ + A +       +++A A  ++     KIL+ L +  ++E++RG  
Sbjct: 3   RLSKLTDYGTVIMTHLARNPGRIYSAAEVAAAIGVAVPTASKILKMLARHHLLESLRGAN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP  QI+I  V+ A E    + EC  +  + C   G C + +  +      F  
Sbjct: 63  GGYLLARPPGQISIAQVIDAMEGPAGMTECSVAAGL-CAQEGLCAIRANWQSINQVIFSA 121

Query: 122 LTQYSIECLVR 132
           L   ++  + +
Sbjct: 122 LNGVTLADMAQ 132


>gi|218462293|ref|ZP_03502384.1| iron-responsive transcriptional regulator [Rhizobium etli Kim 5]
          Length = 89

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 72/89 (80%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LTK+T+Y +R+LMYCA ++   +RI +IA+A  +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1  MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLSKAGLVETVRGR 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
           GGVRL +PA  IT+ DVV+ TE+SF +A
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMA 89


>gi|310777893|ref|YP_003966226.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
 gi|309747216|gb|ADO81878.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
          Length = 165

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 19/144 (13%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             +   +YG+  L+Y   H +     + +++    ISE +L K+   L K+GIV +  G 
Sbjct: 3   QFSIGVEYGLHCLLYLVDHPEGKAISVKELSTFQGISETYLSKVFTKLKKSGIVRSTPGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSCG 106
           +GG  L R +  I+  DV++A E +  + +C                 +  DCP    C 
Sbjct: 63  KGGYELARDSKDISFWDVIEAIEGNSNLFQCAGILKSTVINTEEEVEKYSGDCP----CI 118

Query: 107 LTSVLRKALNAFFDVLTQYSIECL 130
           + +V+  A       L + S+  L
Sbjct: 119 IKNVMLDAEEQMRIYLREKSLYWL 142


>gi|229110219|ref|ZP_04239793.1| Transcriptional regulator [Bacillus cereus Rock1-15]
 gi|228673205|gb|EEL28475.1| Transcriptional regulator [Bacillus cereus Rock1-15]
          Length = 133

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G
Sbjct: 1   MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +  + I+ LD++ A E    + EC    K        C +  V+  A     
Sbjct: 61  PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPG------CLINEVMLAAEEKME 114

Query: 120 DVLTQYSIECLVRN 133
           + L    I  L + 
Sbjct: 115 EELRNQKIVALAKK 128


>gi|298247460|ref|ZP_06971265.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550119|gb|EFH83985.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 168

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++  ++G+      A +          +AE   +SE +L K LQ L + GI+E+V G
Sbjct: 1   MKLSEGVEWGLHCTSVLASLPTKATLPTKALAEYHGVSETYLSKHLQALTRGGIIESVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
            RGG RL RPA +IT+LDVV+A +       C     +  C +  S     C +   + +
Sbjct: 61  PRGGYRLARPATEITLLDVVEAIDGPEPAFRCTEIRQQGPCAIESSAYHLPCTIHVAMAR 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A   + + L   +I  +V  
Sbjct: 121 AEKLWRNELRAQTIADIVAQ 140


>gi|256826636|ref|YP_003150595.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
 gi|256582779|gb|ACU93913.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
          Length = 150

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+    H    P  +  IA+   IS+ +L +++  L   GI++  RG
Sbjct: 1   MQISTKGRYALRFLLDLCQHQGTGPVPLKDIAQRQGISKKYLEQVIALLNPTGILQVTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-------VLR 112
            +GG RL +    IT+ DV+  TE  F          +D     +  L+S       +  
Sbjct: 61  YQGGYRLAKAPRDITVADVLAVTESGFTAGAASTGTNVDTTERSASLLSSNETMLEPIWE 120

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
                  D L + S++ ++   + 
Sbjct: 121 GLEQTVNDYLAEISLQDIIDRYTP 144


>gi|332971653|gb|EGK10602.1| iron-sulfur cluster assembly transcription regulator IscR
           [Psychrobacter sp. 1501(2011)]
          Length = 175

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M LT R  Y +  L+  AI +        +S IA+   IS  +L ++   L KAG+V + 
Sbjct: 1   MRLTTRGRYAVTALLDLAIQDGDSSSAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L +P ++I ++ ++ A +ES          + +C     C    +       
Sbjct: 61  RGASGGYHLAKPLNEIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSMH 118

Query: 118 FFDVLTQYSIECL-----VRNRSSIKKIFNA 143
               L   S++ L     V++ S  +++ + 
Sbjct: 119 IEQYLKNISLDQLLEMENVKDVSHRQQLLHE 149


>gi|228475199|ref|ZP_04059925.1| Rrf2 family protein [Staphylococcus hominis SK119]
 gi|314936260|ref|ZP_07843607.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
 gi|228270810|gb|EEK12212.1| Rrf2 family protein [Staphylococcus hominis SK119]
 gi|313654879|gb|EFS18624.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
          Length = 140

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ ++RG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  P+++I+  D+++  E    + E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSEPP--------AQKELWLRMRDAVR 112

Query: 120 DVLTQYS---IECLVRNRSSI 137
           +VL   +   +   V + + +
Sbjct: 113 EVLDNTTLKYLADFVESDNDL 133


>gi|209545272|ref|YP_002277501.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532949|gb|ACI52886.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 180

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           T+Y +  L++   + + P     +A+   I   F+ K+L  L KAG++E   G RGG RL
Sbjct: 8   TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            RPA+ I++L VV A E    +  C         F          G CG+ +V+ +A  A
Sbjct: 67  ARPAEDISVLAVVDAVEGRKSLFNCQEIRGRCALFDERPPRWATQGVCGIHAVMLRAEQA 126

Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143
               + + S+  L   VR+++ +  + +A
Sbjct: 127 MRQEMARTSLADLARSVRDKAPLPFLGDA 155


>gi|161870250|ref|YP_001599421.1| DNA-binding protein [Neisseria meningitidis 053442]
 gi|161595803|gb|ABX73463.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           053442]
          Length = 164

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 17  MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 76

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 77  PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 134

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  +++
Sbjct: 135 DYLGSVTLQSIIEQKNN 151


>gi|328956203|ref|YP_004373536.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
 gi|328456527|gb|AEB07721.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
          Length = 162

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY  R+L            +   AE   +   F   I   L K G +E++RG 
Sbjct: 1   MDISRKTDYAFRILAMLVGSKGSLLSVRTAAEEMDVPYSFARSIQHELTKVGFIESLRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL      IT+ D+++A +    V +C    K  CP   SC    +   A     D
Sbjct: 61  RGGMRLKIDPASITVNDIIEAMQGPLVVNKCLKDGKP-CPRRESCCYHPIWIGAKALLRD 119

Query: 121 VLTQYSIECLVR 132
            L+  ++E  V 
Sbjct: 120 YLSSVTLEEAVN 131


>gi|269119309|ref|YP_003307486.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sebaldella termitidis ATCC 33386]
 gi|268613187|gb|ACZ07555.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
           ATCC 33386]
          Length = 164

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH +   +Y +  L+Y A  +  P   + ++AE   ISE +L KI   L K GIV+   G
Sbjct: 1   MHYSVGVEYALHCLIYLATPSVKPVLTVKELAEFQGISETYLSKIFTKLSKNGIVKATPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108
             GG +L +    +T  DVV+A E    +  C             +   +CP    C + 
Sbjct: 61  VTGGYQLKQDPSVVTFWDVVQAVEGEKQIFRCKNIIGTCALHDKKTEAEECPGKVDCLIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
            V+  A       L + +++ L   
Sbjct: 121 DVMLDAEKQMELYLKEKNLKWLTEK 145


>gi|85375385|ref|YP_459447.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
 gi|84788468|gb|ABC64650.1| predicted transcriptional regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 136

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY +  + + A H        +++A    +    + K++  L  AG++ +VRG
Sbjct: 1   MRLSNLADYAVVTMSHAARHCGGGRVSAAELAAETGLPVPTVQKVVSKLTAAGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG++L RPA  I + D+V+A E    +  C      DC +  +C +        NA  
Sbjct: 61  AGGGLQLARPAAAINVADIVEAVEGPIALTACIDG--TDCAVDHNCTVKPHWPLINNAMR 118

Query: 120 DVLTQYSIECLVRNRS 135
             L    +  L   + 
Sbjct: 119 GALAGIPLTQLAAEKE 134


>gi|226308877|ref|YP_002768837.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187994|dbj|BAH36098.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 154

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +  +   + P   +++AE   +S+ +L K L+ L  AG+V    GR
Sbjct: 1   MKLSGGVEWSLHCCVVLS-QAEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R  ++IT+LDVV+A + +     C         A+    C    +CG+  V+ 
Sbjct: 60  DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142
            A  A+   L+  +I  L    +  +++KI  
Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKILT 149


>gi|288549656|ref|ZP_05967727.2| transcriptional regulator, BadM/Rrf2 family [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317777|gb|EFC56715.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter
           cancerogenus ATCC 35316]
          Length = 174

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  LM    A   +    + ++A    +   +L KI   L +AG+V +  G+ 
Sbjct: 11  SSGVEYGIHSLMCMVDAKGCEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVSSTEGKG 70

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L RPA+ I++LDV  A +    + EC         F          G CG+ SV+ 
Sbjct: 71  GGFKLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 130

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L++++I  L R 
Sbjct: 131 SAQQRMEEELSRHTILDLARK 151


>gi|89098510|ref|ZP_01171393.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89086755|gb|EAR65873.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 133

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +  T+Y +  +++  +   +    + ++AE   +S  +L K+L  L KAG++E+  G
Sbjct: 1   MKYSNATNYALHTMVHLMLEPGEGTVGVQELAEMQHLSPTYLSKVLTKLAKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG ++ R   +I+ LDV+ A E    + +C   H+        C + +V+R+A     
Sbjct: 61  AKGGYKISRKKHEISFLDVIHAIEGETSLFDCSIHHEG-------CLIENVMRQAEENMK 113

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L    +  + +   S +K
Sbjct: 114 SELASKLLIDIAKEAESQRK 133


>gi|119357736|ref|YP_912380.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355085|gb|ABL65956.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 141

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           H++++ +YG+  + Y A         + ++A+    S+ FL K +Q L KAGI+ +V+G 
Sbjct: 3   HVSRKFEYGLHAVSYLATRGAGRVVTVKEMADDIGFSQEFLSKAMQSLKKAGIIASVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +P   IT+ D+ +A E    +  C +   + C +   C     +    N   +
Sbjct: 63  KGGYTLAKPLSGITVADIGEAIEGKPHLTRCASD--LYCEIASKCTHKQYMNLLQNKIQE 120

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            +   ++E L+    S+ ++
Sbjct: 121 FMGATTLETLIEGDDSLPQL 140


>gi|194333370|ref|YP_002015230.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           aestuarii DSM 271]
 gi|194311188|gb|ACF45583.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
           aestuarii DSM 271]
          Length = 160

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L TK TDY IR L+  A H +      +IAE   I   FL  +LQ LV+AG + +  G
Sbjct: 1   MQLLTKHTDYAIRALLTLAGHGEGYLSARRIAEEQQIPYQFLRGLLQELVRAGFISSREG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGV+L +  + I++ +V+   + S  ++EC    ++ C    +C L   + K      
Sbjct: 61  AHGGVKLIKDPETISVREVIALFQGSIELSECMFRKQM-CVNRANCVLRHQILKIERMVS 119

Query: 120 DVLTQYSIECLVRN 133
               + +I  L+ +
Sbjct: 120 AEFDKVTIGSLLHD 133


>gi|295689542|ref|YP_003593235.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295431445|gb|ADG10617.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 158

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L+ +  Y +  +   A   D        +++IA    IS  +L ++   L + G+V +
Sbjct: 1   MRLSTKGRYAVMAMTDLAKRQDEGEGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG-SCGLTSVLRK 113
            RG  GG RL + + +  I D+V A +E      C         C   G  C   ++  +
Sbjct: 61  ARGPGGGYRLAKASTETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120

Query: 114 ALNAFFDVLTQYSIECLVRNR 134
                   L   S+  +++  
Sbjct: 121 MGRQIHGYLASVSVADVLKGE 141


>gi|210610735|ref|ZP_03288595.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
 gi|210152299|gb|EEA83306.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
          Length = 483

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A   +     S+++    +S  ++ KI + L  A IV    G 
Sbjct: 1   MQLKNSTDYAIRIVCYLAAQ-ERMVSTSELSRKLNVSANYVPKIAKKLKNAKIVTACEGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
            GG  L +  + I++++++   EE+  +  C    +  C   L  +C +  +L    N +
Sbjct: 60  NGGYMLAKQPENISLMEIISCVEETMAINRCLEEDRF-CSRNLEDTCKIHKILLSLQNTY 118

Query: 119 FDVLTQYSIECLVRNRSS 136
            + L    +  ++R    
Sbjct: 119 NNKLESVKVSDVIRPGED 136


>gi|289550608|ref|YP_003471512.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658103|ref|ZP_07910975.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
           M23590]
 gi|289180140|gb|ADC87385.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496432|gb|EFU84755.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
           M23590]
          Length = 140

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IA    +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAAENSLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112

Query: 120 DVLTQYS---IECLVRNRSSI 137
           DVL   +   +   V   + +
Sbjct: 113 DVLDNTTLKYLADYVETEADL 133


>gi|319786706|ref|YP_004146181.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465218|gb|ADV26950.1| transcriptional regulator, BadM/Rrf2 family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 154

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 68/129 (52%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A         +++AE   + +  + K+L+PL +AG+VE +RG R
Sbjct: 3   RVTKLTDYATVVLTVLAARPGEVLSAAELAEQSGLEQPTVSKLLKPLAQAGLVEGLRGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R AD+IT++++V+A E    + EC  +    C +   CG+ S  R   +   D 
Sbjct: 63  GGYRLSRDADRITLIEIVEAMEGPLAMTECSQAGANQCGIAHQCGVRSNWRLINDVVADA 122

Query: 122 LTQYSIECL 130
           L   ++  +
Sbjct: 123 LRGVTLAQM 131


>gi|294677420|ref|YP_003578035.1| FeS assembly cluster transcription factor IscR [Rhodobacter
           capsulatus SB 1003]
 gi|294476240|gb|ADE85628.1| FeS assembly cluster transcription factor IscR [Rhodobacter
           capsulatus SB 1003]
          Length = 152

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  A +       +++I++   IS  +L ++   L +AG+V +VRG
Sbjct: 1   MKLSTKGRYAMVALVDLATVGPGQMTSLAEISKRQDISLPYLEQLFVRLRRAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG +L +   +I I +V +A +E+       A          +  L + L ++L+A  
Sbjct: 61  PGGGYKLAKTPAEIRISEVFEAVDETVSALHVGAGASGGISGSRAQSLANRLWESLSAQV 120

Query: 119 FDVLTQYSIECLVRN 133
           F  L Q ++E +V+N
Sbjct: 121 FVFLHQTTLEDVVKN 135


>gi|158336452|ref|YP_001517626.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306693|gb|ABW28310.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
           MBIC11017]
          Length = 147

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++  +  P  ++ I++   +   +L K+L  L +AG+V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPNFGPASVNVISQRQSLPAPYLEKLLIELRQAGLVRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RP  QI++  +++A  E+    E F                ++ ++      
Sbjct: 61  SKGGYQLARPPVQISLGHILEAVGET---VEPFTEKSAATQQAEDWVTLTLWKRLHQKLK 117

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 118 ESLYSISLEDL 128


>gi|167033277|ref|YP_001668508.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           GB-1]
 gi|166859765|gb|ABY98172.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           GB-1]
          Length = 179

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L +   +YGI  L++          + +  +AE   + + +L K+   L +A +V   
Sbjct: 1   MSLYSAGVEYGIHCLLFLVDERGDSRESSVRDLAELQGVPQEYLAKVFTKLARAKLVVAT 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG  L RP+D+IT+LD+V A +    + +C         F          G+C + 
Sbjct: 61  EGVRGGFHLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFDGAAPGWATEGTCAIH 120

Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
           +V+  A     + L Q +I  L R 
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145


>gi|108760111|ref|YP_629412.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
 gi|108463991|gb|ABF89176.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
          Length = 172

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 3/146 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDYGI ++   A          ++A    +      K+L+ L++A +V + RG  
Sbjct: 3   RMSKMTDYGIVLMTELARAEGDTRTTRELAARTRVPLPSASKVLKSLLQAALVVSHRGAN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFF 119
           GG  L RPA ++ + ++V A E    + EC    S    C L   C +    R   +A  
Sbjct: 63  GGYGLARPAHELPLAELVTALEGPVALTECGVHTSGGAPCELESVCQVRGHWRLINDAIQ 122

Query: 120 DVLTQYSIECLVRNRSSI-KKIFNAG 144
           + L + ++  L+     + +++   G
Sbjct: 123 EALGRLTLADLIAPAPRVPERLVGLG 148


>gi|189499477|ref|YP_001958947.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189494918|gb|ACE03466.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 167

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK TDY IR L+    H        QI++   I   FL +ILQ L K G+  +  G
Sbjct: 3   MKVLTKNTDYAIRALLVLGTHEGEYVSARQISQQQGIPYQFLRRILQELNKNGLTTSREG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGVRL +  D I + DV++  +    ++EC    +I C    SC L   + +      
Sbjct: 63  AHGGVRLEKNPDAIRVRDVIEIFQGKVELSECMFRKQI-CANRASCVLRHEIMRIEEIVS 121

Query: 120 DVLTQYSIECLVRNRSSIK 138
               Q ++  L+ + + + 
Sbjct: 122 REFGQITLGKLLTDLTKLN 140


>gi|330992748|ref|ZP_08316692.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760226|gb|EGG76726.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 151

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ RTDY  RVL++ A + D    I  I+    IS   L K++  L   G+V   RGR
Sbjct: 5   MRLSLRTDYAFRVLIHLAANPDTRVTIRAISTLHRISHNHLMKVVHHLCLCGLVTGTRGR 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-LTSVLRKALNAFF 119
            GG+ L  P   I +  V++  E         A       L      L  +  +A++AF 
Sbjct: 65  TGGIHLAMPPGHIMVGHVIRVMETQGEFMAGHAPSGDSRFLAADARPLRHLTARAMDAFM 124

Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
            VL   SI+ LV +   ++ +  AG
Sbjct: 125 AVLEDMSIQDLVGSPELVRSVCAAG 149


>gi|332708195|ref|ZP_08428185.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L]
 gi|332353021|gb|EGJ32571.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L]
          Length = 147

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   +   +L K+L  + +AG+V++VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSLRPGYGPTSVRAIAKRQGLPAPYLEKLLIEMRRAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L     QI++  +++A  E+         H  D          ++  +      
Sbjct: 61  AQGGYQLAHEPTQISLGKILEAVGETIEP---LPHHTPDAGQAEDWVTFTLWHRLHQKLK 117

Query: 120 DVLTQYSIECL 130
           + L   ++  L
Sbjct: 118 EALYTITLADL 128


>gi|320352697|ref|YP_004194036.1| BadM/Rrf2 family transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320121199|gb|ADW16745.1| transcriptional regulator, BadM/Rrf2 family [Desulfobulbus
           propionicus DSM 2032]
          Length = 159

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +Y IR ++Y +           +IA    I   FL KI Q L K G++E  +G
Sbjct: 1   MRLTRAAEYAIRCMIYLSRQGQGVLTSRQEIAAQADIPPNFLAKIAQDLAKTGLIEIRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG+ L R    I++L+VV+      ++ +C A     C     C +  V   A +   
Sbjct: 61  ARGGLVLNRHPAAISLLEVVEIMIGEIYLNDCVARPAA-CKAQRYCAVHRVWLDARDQLR 119

Query: 120 DVLTQYSIECLVRNRSSI 137
           D L + + + L  + + +
Sbjct: 120 DTLRRVNFDQLSADSTCL 137


>gi|225568454|ref|ZP_03777479.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
           15053]
 gi|225162682|gb|EEG75301.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
           15053]
          Length = 146

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  A +  +    ++ IA+   +S  +L ++   L KAGIV +V+G
Sbjct: 1   MKISTKGRYGLRALVDMAANSGEEAVSLTLIAKRQNLSLNYLEQVFGILRKAGIVASVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL + A  IT+ ++++A E  F +A        D        L  V  +      
Sbjct: 61  AGGGYRLAKDAAGITVKEILEALEGEFSIAGTAKGETEDAVGQAIRTL--VWDEIDRRVN 118

Query: 120 DVLTQYSIECLVRN 133
           ++L + ++  L + 
Sbjct: 119 ELLKEKTLAGLAKE 132


>gi|294629007|ref|ZP_06707567.1| transcriptional regulator [Streptomyces sp. e14]
 gi|292832340|gb|EFF90689.1| transcriptional regulator [Streptomyces sp. e14]
          Length = 157

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TD  +RVLM  A+  +       ++A    +      KI+  L   G++   RG
Sbjct: 9   MRLLRSTDMALRVLMRLAVAGETDTPTTREVAADMGVPYTHAAKIVAELQHRGLLTARRG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +V+  E    VA+C       CPL   C L   LR+A  AF+
Sbjct: 69  RGGGLSLTEAGRGASIGAIVRTMEGEGDVADCTGGD-TPCPLNSDCRLRGALRRAQEAFY 127

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  +V   + 
Sbjct: 128 AALDPLTVADMVAAPTG 144


>gi|313905574|ref|ZP_07838937.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469637|gb|EFR64976.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 131

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + +  Y +RV++  A  + D    +  IAE   IS+ +L  I + +V+  ++    G+ 
Sbjct: 2   FSTKGRYALRVMIDLAQQDSDDFVPLKDIAERQDISKKYLEIIAKEMVRGKLIVGASGKH 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R  ++ ++ +V+   E +F    C A +  +CP    C   S+ ++      + 
Sbjct: 62  GGYRLVRRPEEYSVGEVIDLMEGTFAPVVCLACNAEECPRADKCKTLSMWKEFYEIEKEF 121

Query: 122 LTQYSIECLV 131
                I  L+
Sbjct: 122 FYNKKISDLL 131


>gi|325266631|ref|ZP_08133308.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           denitrificans ATCC 33394]
 gi|324982074|gb|EGC17709.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
           denitrificans ATCC 33394]
          Length = 148

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++  +   +++ I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMIDLALNAQNNAVKLNSISERQQISLSYLEQLFSKLRRAGLVESIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A +I I  ++ A E+      C    K +C     C   ++     +   
Sbjct: 61  PGGGYILGRDAGEINIAQIIAAAEDELDATLC--KGKANCQSGAPCLTHNLWENLNHTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L+  ++  L+  +  
Sbjct: 119 AYLSSVTLAGLLAQQQP 135


>gi|197121302|ref|YP_002133253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Anaeromyxobacter sp. K]
 gi|196171151|gb|ACG72124.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           K]
          Length = 157

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 2/144 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY I +L   A   +       +AE   +    + K+ + L KAG+V + RGR 
Sbjct: 3   RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
           GG  L RPAD I+I ++V+A E    +  C         C L  +C   +       A  
Sbjct: 63  GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L    +  +V   S+  K  +A
Sbjct: 123 GALRGLPLSSIVLQHSNDPKNADA 146


>gi|120404425|ref|YP_954254.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957243|gb|ABM14248.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 148

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  +    +D      QIA +   SE  + K +  LV+ G+VE  R
Sbjct: 1   MQLTRFTDLGLRAMMILSAGEFDDQRVTTRQIAASAGASENHIAKAVSRLVELGLVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C       CPL+  C L   +  A  AF
Sbjct: 61  GRVGGLSLTEAGRTASVGRLVRELEGDREVITC--DGDSPCPLLAGCRLRRAMAAAKEAF 118

Query: 119 FDVLTQYSIECLVRNRS 135
           +  L +Y++  L R  +
Sbjct: 119 YAELDRYTVTDLARGPA 135


>gi|124516103|gb|EAY57611.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
 gi|206602891|gb|EDZ39371.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 156

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            LTK+ DY +  L + +   +     I +++EA  I    L K+LQ L K GI+++    
Sbjct: 3   KLTKKVDYALLALSFLSQQEEGQVVNIREVSEAYQIPTEILAKVLQRLSKKGILQSHHAP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +PA  ++ILDV+ A + S  +  C   H   C  + +C + S L +       
Sbjct: 63  KGGYSLKKPARNVSILDVINAIDGSVGILSCSDGHDKTCQQIDNCDIRSPLERIQGKIMW 122

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
           +L   S+E  + +  +   + + 
Sbjct: 123 LLEDMSLEEFIHSEPTTGGVLHG 145


>gi|291295308|ref|YP_003506706.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
           1279]
 gi|290470267|gb|ADD27686.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
           1279]
          Length = 173

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K   Y  ++L Y  A   D      ++++A  +   +L +IL  LV   +V + +G
Sbjct: 1   MRLSKTDIYAFKILGYLGAQAPDRLVGSEELSKATGVPHTYLARILAALVGHNLVLSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117
           + GG  L RPA++I + DV++A +       C + +    C     C   S V  K  +A
Sbjct: 61  QGGGYALPRPAEEINLRDVIRAVDGPIAPLACVSLNWPKACVEERRCHARSVVWLKVRDA 120

Query: 118 FFDVLTQYSIECLVRN 133
              +L+Q S+  L  +
Sbjct: 121 ALQILSQVSVADLAAD 136


>gi|126433552|ref|YP_001069243.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126233352|gb|ABN96752.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
          Length = 153

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  A    +        IA     SE  + K +  L   G+V   R
Sbjct: 1   MQLTRFTDLGLRTMMLLAAGEADGQRVTTRTIAAGANASEHHIAKAVARLADLGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V +C       CPLV +C L   L  A  AF
Sbjct: 61  GRVGGLTLTDAGRDASVGWLVRRLEGDREVIQCGGED--PCPLVAACRLRKALSDAKEAF 118

Query: 119 FDVLTQYSIECLV 131
           +  L +Y+I  L 
Sbjct: 119 YRELDRYTIADLA 131


>gi|257783930|ref|YP_003179147.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
 gi|257472437|gb|ACV50556.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
          Length = 198

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++++TDY IR+L     +      +   AE   I   F   I   LV AG++ + RG 
Sbjct: 1   MEISRKTDYAIRMLSSLVRNPKKLLSVRDAAEENDIPYSFARSIQHDLVIAGVIVSTRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
           RGG+ L     Q+++LD+V+A +   F++ C     +   CP   SC    +   A    
Sbjct: 61  RGGMMLAIDPTQVSVLDIVEAVQGPVFISNCEWAGPNNEPCPRHNSCYFGPLWCSAEKTL 120

Query: 119 FDVLTQYSIECLV 131
            +     ++  +V
Sbjct: 121 RNFFASVTLHQVV 133


>gi|16126109|ref|NP_420673.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|221234879|ref|YP_002517315.1| Rrf2 family protein [Caulobacter crescentus NA1000]
 gi|13423309|gb|AAK23841.1| RrF2 family protein [Caulobacter crescentus CB15]
 gi|220964051|gb|ACL95407.1| Rrf2 family protein [Caulobacter crescentus NA1000]
          Length = 158

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L+ +  Y +  +   A   D        +++IA    IS  +L ++   L + G+V +
Sbjct: 1   MRLSTKGRYAVMAMTDLAKRQDESDGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVG-SCGLTSVLRK 113
            RG  GG RL + +D+  I D+V A +E      C         C   G  C   ++  +
Sbjct: 61  ARGPGGGYRLAKASDETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120

Query: 114 ALNAFFDVLTQYSIECLVRNR 134
                   L   S+  ++   
Sbjct: 121 MGRQIHGYLASVSVADVLAGE 141


>gi|87199748|ref|YP_497005.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135429|gb|ABD26171.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 144

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A        R+  IAE   I   FL  IL  + + GIV + RGR 
Sbjct: 2   LSQKTRYTIRALQHLADTWGQGAVRLDAIAEKQNIPRKFLTVILSEMAREGIVISHRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  P   I   D+++ T  S  +  C +     H  +C     C L  ++ +  + 
Sbjct: 62  GGYELALPPVDIRYGDIIRLTRGSLALVPCASRNAHEHCNNCLPEVDCRLRGLMLQLRDE 121

Query: 118 FFDVLTQYSIEC 129
              +L + ++  
Sbjct: 122 TAAILDRITLAD 133


>gi|317403134|gb|EFV83661.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 159

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  ++ +   +  A + ND P   S++A A  +   +L K LQ LV+AGI  +  G
Sbjct: 1   MKMSEGVEWALHCCLTLAWVGNDGPVPTSRLAAAFELPSHYLNKFLQSLVRAGIFTSSAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDC-----PLVGSCGLTSVLR 112
            +GG +L +  + I++LDVV A E   +   C         C          CG+ + ++
Sbjct: 61  AKGGFQLAKAPEAISLLDVVMAIEGDEWAFRCTEIRQRGAGCLAKPNDFARPCGIAAAMQ 120

Query: 113 KALNAFFDVLTQYSIECLVR 132
           +A  A+   L   +I  L++
Sbjct: 121 RAETAWRKELAAQTIADLIK 140


>gi|251773253|gb|EES53803.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 174

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 3   LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L K  +Y +  L+       D P  +S IAE   +S  +L KI   L KAGIV    G +
Sbjct: 7   LGKGVEYALHSLLSLIKTPEDSPLGVSDIAEFQGVSPSYLSKIFTRLKKAGIVRFSIGVK 66

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC-----------FASHKIDCPLVGSCGLTSV 110
           GG  L +P DQIT  DVV A E  F + EC                 D    G C +   
Sbjct: 67  GGYVLAKPPDQITFWDVVVAVEGEFSLFECRNIREKIAIYKEGCLNPDWQSRGPCTIHKA 126

Query: 111 LRKALNAFFDVLTQYSIECL 130
           +        + L + +I  L
Sbjct: 127 MMDVETQIRNSLKEKNIAWL 146


>gi|332668756|ref|YP_004451763.1| BadM/Rrf2 family transcriptional regulator [Cellulomonas fimi ATCC
           484]
 gi|332337793|gb|AEE44376.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas fimi ATCC
           484]
          Length = 152

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DY +R     A      P     +A    I   FL +IL  L +AGIV +VRG
Sbjct: 1   MRVSAKADYAVRACAELAASPHGDPVPSEVLAAGQDIPVSFLERILGDLRRAGIVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL RPA  +T+ +V++A +             +      +  L  V         
Sbjct: 61  RSGGYRLARPAGDVTLAEVIRAVDGPLVTVRDERPPSLTYEGSAA-ALLDVWVALRTNVR 119

Query: 120 DVLTQYSIECLVR 132
            VL   ++  LV 
Sbjct: 120 QVLDVVTLAHLVA 132


>gi|227499166|ref|ZP_03929301.1| transcriptional regulator [Acidaminococcus sp. D21]
 gi|226904613|gb|EEH90531.1| transcriptional regulator [Acidaminococcus sp. D21]
          Length = 163

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 19/147 (12%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +Y +  L+Y AI        I ++A    ISE +L KI   L K G+V  V G
Sbjct: 1   MSISVGVEYALHCLIYLAIPTTSRSIGIKEMAAFQGISETYLSKIFMKLRKKGLVSAVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------------FASHKIDCPLVGSC 105
            +GG RL R AD+IT  DVV+A E   +  +C                    +CP    C
Sbjct: 61  VKGGYRLSREADEITFWDVVEAIEGPHYRFQCAEIRQHMAIVDPHELPPSFSECP----C 116

Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVR 132
            ++ V++ A + +   L   +I  L R
Sbjct: 117 LISEVMKGAEDQYRTYLKGRTIGWLYR 143


>gi|110596721|ref|ZP_01385011.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341408|gb|EAT59868.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
          Length = 137

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y +    D    + ++A+   +S+ FL K +Q L +AGI  +V+G 
Sbjct: 3   QVSRKFEYGLHAVTYLSTKGVDRVVTVKEMADDIGVSQEFLSKAMQSLKRAGIARSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R   +IT+ D+  A E +  +  C       C +  SC     +    N   D
Sbjct: 63  KGGYSLGRKPGEITVADIAIAIEGAPHLMRC-GKKLASCEISSSCHHRDYMNSLQNKIQD 121

Query: 121 VLTQYSIECLVRNRS 135
           ++   +I  L+R   
Sbjct: 122 LMASTTIASLLRKEP 136


>gi|18310768|ref|NP_562702.1| hypothetical protein CPE1786 [Clostridium perfringens str. 13]
 gi|18145449|dbj|BAB81492.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 128

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             I  I++   ISE +L ++   L KA +++++RG +GG  L R  + IT+ D+++  E 
Sbjct: 1   MSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRGAQGGYILNRQPEDITVSDIIEVLEG 60

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
              +++C     + C  V  C    + +K   +  +V    +++ +V +  ++K+
Sbjct: 61  PIEISDCLDG--VTCNNVDCCATRLLWKKIKTSIDEVTNSVTLKDIVEDYKAMKE 113


>gi|254410673|ref|ZP_05024452.1| rrf2 family protein (putative transcriptional regulator)
           [Microcoleus chthonoplastes PCC 7420]
 gi|196182879|gb|EDX77864.1| rrf2 family protein (putative transcriptional regulator)
           [Microcoleus chthonoplastes PCC 7420]
          Length = 147

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   +   +L K+L  + +A +V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPGYGPTSVKMIAQRQDLPAPYLEKLLIEMRRANLVNSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   +I++  ++ A  E+         H+ D          ++  +      
Sbjct: 61  SQGGYQLAREPSKISLGQILAAVGETIEP---LHHHQADATQAEDWVTLTLWHRLHEKLK 117

Query: 120 DVLTQYSIECL 130
           D L   ++  L
Sbjct: 118 DALYSITLADL 128


>gi|229062524|ref|ZP_04199837.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|228716807|gb|EEL68498.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
          Length = 168

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y           I  +AE   +SE FL K+   L KAGIV +V G
Sbjct: 1   MQYSVGVEYALHCLVYLVTAPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108
            +GG RL +  + I+  DV++A E    + +C             +         SC + 
Sbjct: 61  VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDKTCNSCESSNSSCTIN 120

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
            ++ +A     + L + ++  L
Sbjct: 121 LIMLEAEEHMREFLRKKTLAWL 142


>gi|170723498|ref|YP_001751186.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
           W619]
 gi|169761501|gb|ACA74817.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
           W619]
          Length = 150

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R  + 
Sbjct: 1   MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGMET 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A  ES     C      DC    +C    +         + L+  S+  LV 
Sbjct: 61  IQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLADLVM 118

Query: 133 NRS 135
            R 
Sbjct: 119 RRE 121


>gi|189346037|ref|YP_001942566.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM
           245]
 gi|189340184|gb|ACD89587.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
           DSM 245]
          Length = 143

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A         + ++AE+   S+ FL K +Q + KAGI E+V+G 
Sbjct: 3   QVSRKFEYGLHAVAYLATKGSGRVVTVKEMAESIGFSQEFLSKAMQSMKKAGITESVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL R    ITI D+  A E    +  C A     C +   C     +    +    
Sbjct: 63  KGGYRLARHPSVITIADIGIAIEGKPHLTRC-AVKLSSCEIAAHCDYRGYMNTLQDRIQS 121

Query: 121 VLTQYSIECLVRNRSS 136
           ++   ++  +++   S
Sbjct: 122 LMASTTVADILKQPDS 137


>gi|126658452|ref|ZP_01729600.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp.
           CCY0110]
 gi|126620194|gb|EAZ90915.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp.
           CCY0110]
          Length = 147

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ Y ++ L+  ++  +  P  +  IA+   +   +L K+L  + ++G+V ++RG
Sbjct: 1   MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIEMRRSGLVNSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   QI++ +++ A  ++         +  D   V      S+ ++      
Sbjct: 61  SQGGYQLARQPSQISLGEILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L + ++  L  +  S K     
Sbjct: 118 EALYKITLADLYYDARSWKASLGE 141


>gi|242242899|ref|ZP_04797344.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242233674|gb|EES35986.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|319400953|gb|EFV89172.1| rrf2 family protein [Staphylococcus epidermidis FRI909]
          Length = 140

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  P+++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133


>gi|27468226|ref|NP_764863.1| hypothetical protein SE1308 [Staphylococcus epidermidis ATCC 12228]
 gi|57867116|ref|YP_188765.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
 gi|251811031|ref|ZP_04825504.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875949|ref|ZP_06284816.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
 gi|293366417|ref|ZP_06613095.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315772|gb|AAO04907.1|AE016748_141 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57637774|gb|AAW54562.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
 gi|251805449|gb|EES58106.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294974|gb|EFA87501.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
 gi|291319451|gb|EFE59819.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724645|gb|EGG61151.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
           VCU144]
 gi|329735208|gb|EGG71500.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
           VCU045]
          Length = 140

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  P+++IT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133


>gi|22297713|ref|NP_680960.1| hypothetical protein tll0169 [Thermosynechococcus elongatus BP-1]
 gi|22293890|dbj|BAC07722.1| tll0169 [Thermosynechococcus elongatus BP-1]
          Length = 148

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y I+ L+  ++  +  P  +  IAE   I   +L K+L  L +AG+V ++RG
Sbjct: 1   MTLTTRGHYSIKALLDLSLLPNYGPASVRAIAERQKIPAPYLEKLLIELRRAGLVRSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L RP   I++ D++ A  ES      F                S+ ++      
Sbjct: 61  VYGGYQLARPPATISLRDILTAVGES--PTPLFLHPPQPTDGTADWVTLSLWQRLHQKLQ 118

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 119 EALASISLEDL 129


>gi|172035368|ref|YP_001801869.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
 gi|171696822|gb|ACB49803.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
          Length = 153

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ Y ++ L+  ++  +  P  +  IA+   +   +L K+L  + ++G+V ++RG
Sbjct: 7   MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIKMRRSGLVNSLRG 66

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   QI++  ++ A  ++         +  D   V      S+ ++      
Sbjct: 67  SQGGYQLARQPSQISLGQILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 123

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L + ++  L  +  S K     
Sbjct: 124 EALYKITLADLYYDARSWKASLGE 147


>gi|302532532|ref|ZP_07284874.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. C]
 gi|302441427|gb|EFL13243.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sp. C]
          Length = 152

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A   +D P +   IA+A  I   FL  IL  + + G+V + RG
Sbjct: 1   MRISARADYAVRAALQLAASQDDGPLKAEAIADAQEIPHKFLEGILNDMRRGGLVLSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  I+I DV++  +             +         L  +         
Sbjct: 61  GNGGYRLARPARSISIADVIRVVDGPLVSVRGVRPPDLSYTGPAE-SLLPLWIALRANVR 119

Query: 120 DVLTQYSIECLV 131
           ++L   S+  + 
Sbjct: 120 EILDGVSLADVA 131


>gi|169829936|ref|YP_001700094.1| putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
 gi|168994424|gb|ACA41964.1| Putative HTH-type transcriptional regulator [Lysinibacillus
           sphaericus C3-41]
          Length = 138

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++   +       +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 2   MKYSKATNYALHTMVFLTNMPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+ +   +I+ LDV+ A E    +  C + H+      G C +  V+  A N   
Sbjct: 62  VNGGYRISKRPQEISFLDVIYAIEGQTTLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120

Query: 120 DVLTQYSIECLVRN 133
           + L++  I  +   
Sbjct: 121 EELSKKFIIDIAHE 134


>gi|117164556|emb|CAJ88102.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 152

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A   +D P +   IA+A  I   FL  IL  + + G+V + RG
Sbjct: 1   MRISARADYAVRAALQLAASRDDGPLKAEAIADAQDIPHKFLEGILNDMRRGGLVLSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PA+ I+I DV++  E            ++         L  +     +   
Sbjct: 61  GNGGYRLAKPAESISIADVIRTVEGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 119

Query: 120 DVLTQYSIECLVRNR 134
           ++L   S+  +   +
Sbjct: 120 EILEGVSLADVASAQ 134


>gi|111017203|ref|YP_700175.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816733|gb|ABG92017.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 153

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +  +   + P   +++AE   +S+ +L K LQ L +AG+V    GR
Sbjct: 1   MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R  + IT+LDVV+A + +     C         A+    C    +CG+  V+ 
Sbjct: 60  DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 117

Query: 113 KALNAFFDVLTQYSIECL 130
            A  A+   L+  +I  L
Sbjct: 118 GAEQAWRASLSSVTIADL 135


>gi|269127656|ref|YP_003301026.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
           DSM 43183]
 gi|268312614|gb|ACY98988.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
           curvata DSM 43183]
          Length = 146

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +R+ M  A+ +        Q+AEA       + K++  L   G++E  RG
Sbjct: 1   MRLTKFTDLALRISMRLAVADPAEVYTTKQVAEAVGAPYTHVAKVVSRLQHLGVLEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       +I  +++  E    VA C       CPL  +C L   L +A  AF+
Sbjct: 61  RGGGLVLTERGRDASIGWLMRELEGYGDVAGC--EDSPPCPLRAACRLRGALSRAQEAFY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV   S+
Sbjct: 119 AALDPVTVRELVEAPSA 135


>gi|309379665|emb|CBX21654.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 148

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  ++S
Sbjct: 119 DYLGSVTLQSIIEQKNS 135


>gi|15643333|ref|NP_228377.1| hypothetical protein TM0567 [Thermotoga maritima MSB8]
 gi|170288170|ref|YP_001738408.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281411786|ref|YP_003345865.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila
           RKU-10]
 gi|4981083|gb|AAD35652.1|AE001731_9 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|170175673|gb|ACB08725.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
 gi|281372889|gb|ADA66451.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
           naphthophila RKU-10]
          Length = 137

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60
            T R++Y +R+++  A        +++I E     +   F  KIL  L KAG+V+T RG+
Sbjct: 2   FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + ++V   +    V          CP    C + ++ ++  N    
Sbjct: 62  SGGYMLSRPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117

Query: 121 VLTQYSIECLVRNRSSIKK 139
           +L+  ++E LVR +    K
Sbjct: 118 ILSGVTLEDLVREQEEKMK 136


>gi|330807635|ref|YP_004352097.1| transcription factor, Rrf2 family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375743|gb|AEA67093.1| putative Transcription factor, Rrf2 family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 150

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H    P  ++ I+E   IS  +L ++   L ++ +V +VRG  GG +L R    
Sbjct: 1   MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQG 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  V+ A  ES    +C      DC    +C    +         + L+  S+  LV 
Sbjct: 61  IQVAQVIDAVNESVDATKCQGLG--DCHGGDTCLTHHLWCDLSLQIHEFLSGISLADLVT 118

Query: 133 NRS 135
            R 
Sbjct: 119 RRE 121


>gi|255037279|ref|YP_003087900.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254950035|gb|ACT94735.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 147

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+  Y ++ L   A      P  IS IAE   I + FL  IL  L   G++++ +G+ 
Sbjct: 2   ISKKAKYALKALKVLAEQYGKGPVLISYIAEKEKIPKKFLEAILLDLRNNGVLQSQKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  P  ++    V++  +     A C    F     DC    +C L +VL +  +A
Sbjct: 62  GGYLLRVPPGEVNFSKVLRIIDGPIAPALCVSMFFYGKCDDCKDEETCSLRTVLERWRDA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL + ++  L++  ++
Sbjct: 122 NLAVLDKTTLSDLLQAENA 140


>gi|256377869|ref|YP_003101529.1| BadM/Rrf2 family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922172|gb|ACU37683.1| transcriptional regulator, BadM/Rrf2 family [Actinosynnema mirum
           DSM 43827]
          Length = 141

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL+K TD  +RVLM  A   D    +  +A +  +    + K++Q L K G+V T RGR
Sbjct: 1   MHLSKATDIALRVLM-LAAAKDAQLTVDDLATSMNVPRNHVAKVVQRLQKEGLVTTARGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV +   A  ++   VV+  E    V +C    +  CPL  +C L   LR A  AFF 
Sbjct: 60  NGGVSVPPGARGVSAGHVVRRFEGEDEVVDC---EQGPCPLHRACLLRGALRTAREAFFA 116

Query: 121 VLTQYSIECLVRNRSS 136
            L    +  L+   + 
Sbjct: 117 SLDTVLLRDLIAPPTG 132


>gi|254796684|ref|YP_003081520.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
           risticii str. Illinois]
 gi|254589924|gb|ACT69286.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
           risticii str. Illinois]
          Length = 522

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT +T Y I   +  A+H+      + S+IA    ISE FL  IL PL K GI+E++ G 
Sbjct: 2   LTAKTRYAIVASIDIALHSKGRKYVKTSEIASRQKISEKFLEVILPPLKKQGILESLLGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119
            GG RL +  D I ++ ++KA  ++  +  C    +  C      C   ++       F 
Sbjct: 62  GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 121

Query: 120 DVLTQYSIECLVRN 133
           +     +++ ++ +
Sbjct: 122 NFFESVTLQDIISD 135


>gi|17232043|ref|NP_488591.1| hypothetical protein alr4551 [Nostoc sp. PCC 7120]
 gi|17133687|dbj|BAB76250.1| alr4551 [Nostoc sp. PCC 7120]
          Length = 145

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  +  P +I QIA    I + +L ++L  L + GI+ + R
Sbjct: 1   MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L R   +I+I ++++  E         +   +    + +  +  + ++A  A 
Sbjct: 61  GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDASVIEEIWQEARQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL +YS++ L   R S +++
Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139


>gi|239932920|ref|ZP_04689873.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 152

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A    D P +   I++A  I   FL  IL  + + G+V + RG
Sbjct: 1   MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PA+ ITI DV++  +            ++         L  +     +   
Sbjct: 61  GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 119

Query: 120 DVLTQYSIECLVRNR 134
           ++L   S+  +   +
Sbjct: 120 EILEGVSLADVASAQ 134


>gi|197106347|ref|YP_002131724.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
 gi|196479767|gb|ACG79295.1| conserved predicted transcriptional regulator [Phenylobacterium
           zucineum HLK1]
          Length = 145

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R+ Y +R L++ A   +  P  I++IAEA      FL  IL  L +  ++ + RGR 
Sbjct: 2   LSQRSRYALRALVHLAGRTDGRPAAIAEIAEAAATPRKFLEAILLELKRRQLLVSTRGRF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG RL RPA +I+  DV++A +    +A C +         CP V  C +   L KA +A
Sbjct: 62  GGYRLARPASEISFADVIRALDGPLALAPCASKTAYRPCETCPTVEDCPVHPALAKARDA 121

Query: 118 FFDVLTQYSIE 128
              VL  +++E
Sbjct: 122 VAAVLETWTLE 132


>gi|21674519|ref|NP_662584.1| hypothetical protein CT1702 [Chlorobium tepidum TLS]
 gi|21647711|gb|AAM72926.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 152

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  L K TDY +R L+   + +D       I++   I   FL +ILQ L++ G+VE+  G
Sbjct: 1   MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGV+L +    I + DV++  +    ++EC    ++ C    +C L   + +      
Sbjct: 61  AGGGVKLAKEPGDIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +  +Q +I  L+ +  +++ +
Sbjct: 120 NEFSQVTIGKLIDDLKAVEAM 140


>gi|297245670|ref|ZP_06929535.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8796]
 gi|297177321|gb|EFH36573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
           A8796]
          Length = 140

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++I+  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESELP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVR 132
           DVL   +++ L  
Sbjct: 113 DVLDNTTLKYLAE 125


>gi|148269496|ref|YP_001243956.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735040|gb|ABQ46380.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila
           RKU-1]
          Length = 137

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60
            T R++Y +R+++  A        +++I E     +   F  KIL  L KAG+V+T RG+
Sbjct: 2   FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +I + ++V   +    V          CP    C + ++ ++  N    
Sbjct: 62  SGGYMLARPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117

Query: 121 VLTQYSIECLVRNRSS 136
           +L+  ++E L++ +  
Sbjct: 118 ILSGVTLEDLIKEQEE 133


>gi|329737377|gb|EGG73631.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
           VCU028]
          Length = 140

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  P++QIT  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPSEQITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           DVL   +++ L   + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133


>gi|227484972|ref|ZP_03915288.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237127|gb|EEI87142.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 133

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  YG+R + Y A + D     +S+I+E   +SE +L ++++ L K G++++ RG
Sbjct: 1   MKLSTRGRYGLRAICYIAENQDKGFIPVSEISEKLNLSENYLEQLVRVLKKDGLIKSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG ++      ITI  ++++ E     +EC  S K DC     C    +  K      
Sbjct: 61  PKGGYKIKSDLSSITIGQILRSLEGDMTTSECV-SGKFDC--SEKCDAYDLFSKLDYLIN 117

Query: 120 DVLTQYSIECLVRNR 134
             +   ++E +V++ 
Sbjct: 118 AAIDSITLENIVKHE 132


>gi|261855791|ref|YP_003263074.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261836260|gb|ACX96027.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 168

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++ +DY I +L   A           +++   ++   + K+++ L    ++ + +GR 
Sbjct: 3   KISRMSDYAIVLLTAMAKLASEQQTARALSDQTGLTLPTVGKLVKMLAANELLCSQQGRH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPAD+I++ D++++ +    + ECF     DC     CGL    +   +    +
Sbjct: 63  GGYRLARPADKISLADIIESIDGPIAMTECFTVEH-DCEREADCGLKPHWKAINDGVRQL 121

Query: 122 LTQYSIECLVRNRSSIKKIFN 142
           L + ++  L+     +   F+
Sbjct: 122 LDRTTLAELIEPIPQVPVWFD 142


>gi|325201913|gb|ADY97367.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240149]
 gi|325208335|gb|ADZ03787.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis NZ-05/33]
          Length = 148

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135


>gi|239977954|ref|ZP_04700478.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 144

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 1   MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPAD+IT+LDV +A +         +   +  P  G+ GL  V R+  +A   
Sbjct: 61  EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 119

Query: 121 VLTQYSIECLVRNRS 135
           +L   ++  L+ + +
Sbjct: 120 ILQGVTLTSLLADEA 134


>gi|291449865|ref|ZP_06589255.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291352814|gb|EFE79716.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 147

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 4   MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPAD+IT+LDV +A +         +   +  P  G+ GL  V R+  +A   
Sbjct: 64  EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 122

Query: 121 VLTQYSIECLVRNRS 135
           +L   ++  L+ + +
Sbjct: 123 ILQGVTLTSLLADEA 137


>gi|271964996|ref|YP_003339192.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
           roseum DSM 43021]
 gi|270508171|gb|ACZ86449.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
           roseum DSM 43021]
          Length = 142

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD  +RV M  A+          Q+AE   I      K++  L   G+VE  RG
Sbjct: 1   MRLTKFTDLALRVTMRLAVAEQGTSLTTRQVAEVMAIPYTHTAKVIARLQHLGVVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L       ++  +V+  E    V  C    +  CPL  +C L   LR A  AF+
Sbjct: 61  RGGGLELTVAGRTASLGWLVRELEGEEEVVAC--EGETPCPLRAACRLRGALRGAQQAFY 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++  LV + + 
Sbjct: 119 ASLDPLTVNDLVASPTG 135


>gi|217970313|ref|YP_002355547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thauera sp. MZ1T]
 gi|217507640|gb|ACK54651.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
          Length = 171

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDYG  +L + A H D  +  + +AEA  +    + K+L+ L +  +V + RG  
Sbjct: 3   RISKLTDYGTLILTHMAGHPDRLHSAAGLAEALGLGLPTVSKVLKTLGRHELVSSQRGAH 62

Query: 62  GGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L RP D+IT+ DV+ A EE  F + EC +S  + C +   C +     +       
Sbjct: 63  GGYALARPPDRITVADVIDALEEQAFGLTECSSSSGV-CAIESDCRIRENWMRINTVVRQ 121

Query: 121 VLTQYSIECLVR 132
            L   +I  +V 
Sbjct: 122 ALQAVNIADMVH 133


>gi|85707148|ref|ZP_01038235.1| rrf2 family protein [Roseovarius sp. 217]
 gi|85668307|gb|EAQ23181.1| rrf2 family protein [Roseovarius sp. 217]
          Length = 100

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/100 (47%), Positives = 63/100 (63%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TKRT+  IR+LM+CA +ND     ++IAE C  SE  L +I+  L + G + T RGR
Sbjct: 1   MRITKRTNIAIRLLMFCASNNDRLVTKAEIAERCNTSESHLAQIINRLSQLGFLYTQRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
            GGVRL RP  +IT+ DV +  E++  VAECFA     CP
Sbjct: 61  TGGVRLGRPMTEITVGDVFRQLEQNTPVAECFADVDNTCP 100


>gi|67923935|ref|ZP_00517390.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501]
 gi|67854203|gb|EAM49507.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501]
          Length = 147

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ Y ++ L+  ++  +  P  +  IA+   +   +L K+L  + + G+V ++RG
Sbjct: 1   MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQELPAPYLEKLLIEMRRNGLVNSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L R   +I++  ++ A  E+         +  D   V      S+ ++      
Sbjct: 61  SRGGYQLARQPSEISLGQILDAVGETIEP---LPHYNPDLDQVEDWVTFSLWKRLHQKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L + ++  L  +  S K     
Sbjct: 118 EALYKITLADLYYDARSWKASLGE 141


>gi|310819041|ref|YP_003951399.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392113|gb|ADO69572.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 152

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           TDYG+ +L   A          ++AE   +    + K+L+ L  AG++ + RG  GG  L
Sbjct: 2   TDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMGGYGL 61

Query: 67  CRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            RPA  I +  V+ A E    +  C      +  C L   C +    R    A  + L +
Sbjct: 62  ARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQEALGR 121

Query: 125 YSIECLVRNRSSIKKIFN 142
            ++  L      ++++  
Sbjct: 122 LTLADLCAPELRVERLVG 139


>gi|166366256|ref|YP_001658529.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088629|dbj|BAG03337.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 147

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  + +AG+V + RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RPA++I++  +++A  E+       + +             ++ +       
Sbjct: 61  AQGGYQLARPANRISLGQILEAVGETIEP---LSGYHPRDEQAEDWVTFTIWKHLHEKLK 117

Query: 120 DVLTQYSIECL 130
           + L + ++  L
Sbjct: 118 EALGKITLADL 128


>gi|329906564|ref|ZP_08274419.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547254|gb|EGF32103.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 148

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ +D G+RVL+Y A     +    +++IA    I    L K+   L + G V+  R
Sbjct: 1   MRLTRYSDIGLRVLIYLARSGTRESQITVAEIAAQFDIPINHLIKVAGHLARTGWVDATR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+RL   A  + +  ++   E    + +C     + C L   C L   L+  + AF
Sbjct: 61  GRNGGLRLAIDATTLHVGTILLELEGKDELIDC---DGLACHLRKDCILRDALKVGMQAF 117

Query: 119 FDVLTQYSIECLVRNRSS 136
           +D +  Y++  L   ++ 
Sbjct: 118 YDAMNGYTLADLCDGKTG 135


>gi|298491131|ref|YP_003721308.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298233049|gb|ADI64185.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708]
          Length = 147

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   I   +L K+L  + +AG+V+++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPKYGPVSVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L     QI+I  +++A  E+                       ++ ++      
Sbjct: 61  SIGGYQLAIKPAQISIGQILEAVGENITDLPLNNPRPAQ---AEDWVTFTLWQRLNQKLR 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L   ++  L  +  S +     
Sbjct: 118 EALYSVTLADLYYDARSWQASLGE 141


>gi|159026192|emb|CAO88841.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 147

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  + +AG+V + RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RPA++I++  +++A  E+       + +             ++ +       
Sbjct: 61  SQGGYQLARPANRISLGQILEAVGETIEP---LSGYHPKDEQAEDWVTFTIWKHLHEKLK 117

Query: 120 DVLTQYSIECL 130
           + L + ++  L
Sbjct: 118 EALGKITLADL 128


>gi|15677241|ref|NP_274394.1| hypothetical protein NMB1378 [Neisseria meningitidis MC58]
 gi|121635084|ref|YP_975329.1| DNA-binding protein [Neisseria meningitidis FAM18]
 gi|218768395|ref|YP_002342907.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           Z2491]
 gi|254805173|ref|YP_003083394.1| putative transcription factor [Neisseria meningitidis alpha14]
 gi|304387294|ref|ZP_07369487.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria meningitidis ATCC 13091]
 gi|313668524|ref|YP_004048808.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|60416285|sp|P0A0Y9|Y1593_NEIMA RecName: Full=Putative HTH-type transcriptional regulator NMA1593
 gi|60416286|sp|P0A0Z0|Y1378_NEIMB RecName: Full=Putative HTH-type transcriptional regulator NMB1378
 gi|7413461|gb|AAF62328.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|120866790|emb|CAM10543.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           FAM18]
 gi|121052403|emb|CAM08736.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           Z2491]
 gi|254668715|emb|CBA06505.1| putative transcription factor [Neisseria meningitidis alpha14]
 gi|254669828|emb|CBA04202.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|261392349|emb|CAX49885.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
           IscR [Neisseria meningitidis 8013]
 gi|304338677|gb|EFM04794.1| iron-sulfur cluster assembly transcription regulator IscR
           [Neisseria meningitidis ATCC 13091]
 gi|308389496|gb|ADO31816.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
           alpha710]
 gi|313005986|emb|CBN87445.1| putative transcriptional regulator [Neisseria lactamica 020-06]
 gi|316984196|gb|EFV63174.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis H44/76]
 gi|319410641|emb|CBY91011.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
           IscR [Neisseria meningitidis WUE 2594]
 gi|325128433|gb|EGC51314.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis N1568]
 gi|325132429|gb|EGC55122.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M6190]
 gi|325134386|gb|EGC57031.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M13399]
 gi|325136465|gb|EGC59071.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M0579]
 gi|325138418|gb|EGC60986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis ES14902]
 gi|325140404|gb|EGC62925.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis CU385]
 gi|325144688|gb|EGC66986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240013]
 gi|325198522|gb|ADY93978.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis G2136]
 gi|325200003|gb|ADY95458.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis H44/76]
 gi|325204371|gb|ADY99824.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M01-240355]
 gi|325205856|gb|ADZ01309.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
           meningitidis M04-240196]
          Length = 148

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSS 136
           D L   +++ ++  +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135


>gi|87198220|ref|YP_495477.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133901|gb|ABD24643.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 146

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY +  +   A H         Q+A+   +    + K++  L  AG++++VRG
Sbjct: 1   MRLSSMADYAVVTMCAAARHCGQQRVSAQQLADETGLPAPTVQKLVSKLSSAGLLKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG++L RPA  IT+ D+V+A E    +A C    + DC L  +C +         A  
Sbjct: 61  ARGGLKLARPAAAITLADIVEAVEGPIALAPCSEHGRHDCTLESACTVRPHWPAVDAALR 120

Query: 120 DVLTQYSIECLVR 132
             L    +  L R
Sbjct: 121 GALAGIPLTQLSR 133


>gi|218682838|ref|ZP_03530439.1| Rrf2 family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 148

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++  Y +R L   A  +   P  IS IA    I + FL +IL  L   GIV + RG++
Sbjct: 2   ITQKAKYALRALTALADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA  IT  ++++  +       C +        DC    +C +  V  K  +A
Sbjct: 62  GGYLLLKPAHTITFGEILRIVDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL   +I    +   S
Sbjct: 122 TRKVLFSTTIADAAQPAHS 140


>gi|220916006|ref|YP_002491310.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953860|gb|ACL64244.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 157

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY I +L   A   +       +AE   +    + K+ + L KAG+V + RGR 
Sbjct: 3   RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
           GG  L RPAD I+I ++V+A E    +  C         C L  +C   +       A  
Sbjct: 63  GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122

Query: 120 DVLTQYSIECLV 131
             L    +  +V
Sbjct: 123 GALRGLPLSSIV 134


>gi|75908723|ref|YP_323019.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75702448|gb|ABA22124.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
           ATCC 29413]
          Length = 145

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y I  L+  A H  +  P +I QIA    I + +L ++L  L + GI+ + R
Sbjct: 1   MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L R   +I+I ++++  E         +   +    +    +  + ++A  A 
Sbjct: 61  GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDGSVIEEIWQEARQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL +YS++ L   R S +++
Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139


>gi|291441270|ref|ZP_06580660.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291344165|gb|EFE71121.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 154

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A    D P +   I++A  I   FL  IL  + + G+V + RG
Sbjct: 3   MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL +PA+ ITI DV++  +            ++         L  +     +   
Sbjct: 63  GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYTGPAE-SLLPLWIALRSNVR 121

Query: 120 DVLTQYSIECLVRNR 134
           ++L   S+  +   +
Sbjct: 122 EILEGVSLADVASAQ 136


>gi|298492262|ref|YP_003722439.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298234180|gb|ADI65316.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708]
          Length = 145

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ ++ Y I  L+  A H  +  P +I QIA    I + +L ++L  L + GIV++ R
Sbjct: 1   MELSCKSQYAILALLEMATHYESGEPMQIRQIAAQQDIPDRYLEQLLATLRRGGIVKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +I++ ++++  E    +         +   V S  +  + ++A  A 
Sbjct: 61  GSKGGYLLAREPWKISVFEILECLEG-LDIKP--GEDDTNSKSVDSSIVDEIWQEARQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL ++S++ L + R S +++
Sbjct: 118 NAVLQKHSLQALCQERDSRRQL 139


>gi|167758029|ref|ZP_02430156.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
 gi|167663926|gb|EDS08056.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
          Length = 140

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y + ++   A+H  +     I  IA    +S  +  ++++ L + G+V ++R
Sbjct: 1   MKISTKGIYALEIITDLAMHTGDGALESIGSIARRRGLSVKYSERLIKELKEQGLVVSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R A +IT+ +V++A E      EC            +C    +  +     
Sbjct: 61  GAHGGYCLGRDAGEITVREVLQAEEGELAPVECLTKETDCGIDCNTCATREIWSQIWQII 120

Query: 119 FDVLTQYSIECLVRNRSSIK 138
            D   + +I  ++    +++
Sbjct: 121 LDTAQEVTIGDIIEKSKNLR 140


>gi|163796150|ref|ZP_02190112.1| rrf2 family protein [alpha proteobacterium BAL199]
 gi|159178609|gb|EDP63149.1| rrf2 family protein [alpha proteobacterium BAL199]
          Length = 167

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L + TDY I VL   A         + +A+A  +    + K+L+ +    ++   RG +
Sbjct: 14  RLNRMTDYAIVVLGQMAHEAGRVRTAAALADATGVPVPTVSKLLKQMAAVSLISAHRGAK 73

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA  +T+ ++++A E    +  C    +  C +  SC +     +   A    
Sbjct: 74  GGYALDRPAAAVTVTEIIQALEGPIALTACVDGAEECCEVEHSCPMRGNWNRVNRAIRAA 133

Query: 122 LTQYSIECLVRNR 134
           L   ++  +V   
Sbjct: 134 LDGVTLADMVDPE 146


>gi|294677664|ref|YP_003578279.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
           SB 1003]
 gi|6136499|sp|O68025|Y166_RHOCA RecName: Full=Putative HTH-type transcriptional regulator rrf2-like
 gi|3128259|gb|AAC16111.1| hypothetical protein [Rhodobacter capsulatus SB 1003]
 gi|294476484|gb|ADE85872.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
           SB 1003]
          Length = 150

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +T++  Y ++ L+  A     D P    I +IA      + FL  IL  L KAG+V ++R
Sbjct: 2   ITQKMKYALKALLELADEARRDSPQALTIEEIATRSGTPKRFLEHILLDLRKAGVVASIR 61

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114
           GR GG  L +    ++I ++V+  +       C +        DC    +C +  V  + 
Sbjct: 62  GRSGGYSLLKAPRDVSISELVRRIDGPIAPLPCLSRSAYQPCDDCHDEAACRIRKVFAEV 121

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
             ++  ++   ++E ++   +   K+  
Sbjct: 122 FWSYLVLIDSLTLEDMLAAGNPAAKLLE 149


>gi|301167345|emb|CBW26927.1| putative DNA-binding protein [Bacteriovorax marinus SJ]
          Length = 179

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +R ++    H N  P R+ +I++   IS  +L ++ + L     V++VRG
Sbjct: 1   MRLTSKGRYAVRAMLDLTTHSNGNPVRLQEISQRQNISLHYLEQLFRKLRNGQAVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R  DQIT+ D+++   E+   A +   +       V      +  +      
Sbjct: 61  PGGGYVLARSMDQITVKDILECVGENINPAKDILGTEAEQASTVEFHLSKNYFQNLGVIM 120

Query: 119 FDVLTQYSIECLVRN 133
            D L+  S+  L+R 
Sbjct: 121 RDYLSTTSLGDLMRK 135


>gi|50428399|dbj|BAD30045.1| hypothetical protein [Rhodococcus opacus]
          Length = 159

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +  +   + P   +++AE   +S+ +L K LQ L +AG+V    GR
Sbjct: 7   MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 65

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R  + IT+LDVV+A + +     C         A+    C    +CG+  V+ 
Sbjct: 66  DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 123

Query: 113 KALNAFFDVLTQYSIECL 130
            A  A+   L+  +I  L
Sbjct: 124 GAEQAWRASLSGVTIADL 141


>gi|193212159|ref|YP_001998112.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
           NCIB 8327]
 gi|193085636|gb|ACF10912.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
           NCIB 8327]
          Length = 142

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 2/141 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  L K TDY +R L+   + +D       I++   I   FL +ILQ L++ G+VE+  G
Sbjct: 1   MKVLNKETDYAVRALISLGMKSDGWVSARAISDEQAIPYQFLRRILQELIRNGLVESKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGV+L +   +I + DV++  +    ++EC    ++ C    +C L   + +      
Sbjct: 61  AGGGVKLAKEPGEIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +  ++ +I  L+ +  +++ +
Sbjct: 120 NEFSKVTIGKLIDDLKAVEAM 140


>gi|153011488|ref|YP_001372702.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563376|gb|ABS16873.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 143

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALNAF 118
           GG  L RPA +I I ++++A + +     C +       D      C +  ++     A 
Sbjct: 62  GGFCLARPAHEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRHMMLDVREAI 121

Query: 119 FDVLTQYSIEC 129
             VL   ++  
Sbjct: 122 ASVLDHRTLAD 132


>gi|269216599|ref|ZP_06160453.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
 gi|269130128|gb|EEZ61210.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
           exigua ATCC 700122]
          Length = 160

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M +T +  Y +R++   A H      P  +  +A+   IS  +L ++ +PLVK+G++++V
Sbjct: 1   MLVTTKGRYAMRLMADVAHHFEKEGTPLSLRAVAQREGISMKYLEQLARPLVKSGLLKSV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG+ GG  L  P+  I   D+++A E +            DC  +  C            
Sbjct: 61  RGKGGGYVLAEPSAAIRAGDILRAAEGNVLPVSSCDGVTFDCARIADCASVKFWIGLDRV 120

Query: 118 FFDVLTQYSIECLVRN 133
             D +    ++ ++  
Sbjct: 121 IEDYVDGVMLKDIIDE 136


>gi|162148831|ref|YP_001603292.1| Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545421|ref|YP_002277650.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787408|emb|CAP57003.1| putative transcriptional regulator, rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533098|gb|ACI53035.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 161

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY +  L+  A   D       +++A  I E  + K+L+ L    +V ++RG R
Sbjct: 3   KLSKLTDYAVVALVRLA-QEDEVMTSPALSQATGIPEPTVAKVLKILAVHDLVVSLRGAR 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RP + I++  V+ A +    +  C       C     CG+        +A    
Sbjct: 62  GGYRLARPLNDISVARVITAVDGPISLTACVDGGG--CDTRPFCGVCGQWDAVNDAIRGA 119

Query: 122 LTQYSIECL 130
           L+  ++  +
Sbjct: 120 LSAITLADM 128


>gi|329934917|ref|ZP_08284958.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
           griseoaurantiacus M045]
 gi|329305739|gb|EGG49595.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
           griseoaurantiacus M045]
          Length = 156

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +RVLM  A+  D      ++A    +      K++  L   G++   RGR
Sbjct: 1   MRLLRSTDLALRVLMRLAVAGDSSPTTREVAADMDVPYTHAAKVVAELQHRGLLAARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATE---ESFFVAECFAS--HKIDCPLVGSCGLTSVLRKAL 115
            GG+ +       ++  VV+A E       V +C         CPL   C L   LR+A 
Sbjct: 61  GGGLSVTEAGRTASVGRVVRAFEGADGGSDVVDCEGGGTGTPPCPLRSDCLLRGALRRAQ 120

Query: 116 NAFFDVLTQYSIECLV 131
            AF+  L   +++ ++
Sbjct: 121 EAFYASLDPLTVQDMI 136


>gi|302562103|ref|ZP_07314445.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
 gi|302479721|gb|EFL42814.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
          Length = 151

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L K G+V + RG 
Sbjct: 8   MHISAKADYATRALLELAREPARPLTCEAIASSQQIPFRFLKSVVGELRKGGLVRSQRGC 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++IT+LD+ +A +         +   +D P   + GL  V R+       
Sbjct: 68  EGGYWLGRPAEEITLLDISRAVDGELLTLRGESPATLDYPGAAA-GLPDVWRRIEADAAA 126

Query: 121 VLTQYSIECLV 131
           VL   ++  L+
Sbjct: 127 VLGGVTVASLL 137


>gi|312897950|ref|ZP_07757363.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
 gi|310620984|gb|EFQ04531.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
          Length = 173

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R+++Y A   +      + +AE   I E FL KI++ L  A I+++ RG
Sbjct: 32  MRLNQATDYAFRMVLYLATCPEGTKITGAALAEKQNIPERFLLKIMRSLTAADIMKSYRG 91

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
             GG  L R    IT+ DV+ A E    +  C A     C     G C L +   +  N 
Sbjct: 92  VEGGFALQRDPKDITLYDVIDAVEGQTQLQRCLADTDA-CTRGCGGMCSLYNAFEEIQND 150

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   +   L     ++
Sbjct: 151 LAAKLKSVNFADLAAKEMAM 170


>gi|167646548|ref|YP_001684211.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167348978|gb|ABZ71713.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 159

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M L+ +  Y +  +   A   D         +++IA    IS  +L ++   L + G+V 
Sbjct: 1   MRLSTKGRYAVMAMTDLARRQDEAEGGRAVALAEIAARQQISLSYLEQLFARLRRKGLVV 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGS-CGL 107
           + RG  GG RL     Q  I D+V A +E      C  S           C   G+ C  
Sbjct: 61  SARGPGGGYRLALDPAQTRISDIVLAVDEPLRATRCGLSKAGVGKGAPKGCMAGGAQCLT 120

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNR 134
             +  +        L   S+  ++  +
Sbjct: 121 HDLWEEMGRQIHGYLASVSVADVLNGK 147


>gi|284039030|ref|YP_003388960.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283818323|gb|ADB40161.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 142

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+  Y I+ L      +   P  I+ IA+   I   FL  IL  +   GI+++ +G+ 
Sbjct: 2   ISKKAKYAIKALKALTESYGSGPILITDIAKRENIPHKFLEGILLEMRNHGILQSQKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
           GG  L    ++I +  V++  +       C + +      DC    +C +  ++ +  +A
Sbjct: 62  GGYLLRVDPERINLAQVIRIIDGPIAPTPCVSLNFYVRCDDCADEETCSIRPIMLRVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              V  + +I+ LV     
Sbjct: 122 NLAVYEKTTIQMLVDKNKQ 140


>gi|330469219|ref|YP_004406962.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328812190|gb|AEB46362.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 153

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L+ R DY +R +   A         P    QIA A  I   FL  IL  L + GI++ 
Sbjct: 1   MRLSARVDYALRAVTELASVTGAGRGRPVTADQIARAQDIPPKFLESILLQLRRGGIMQA 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG  GG  L RPA++I++ DV++  +            ++         L  V      
Sbjct: 61  QRGPEGGYWLARPAEEISLADVIRVIDGPLAHIRGQRPEQLGYQGAAR-ALQDVWIALRA 119

Query: 117 AFFDVLTQYSIECLVR 132
               +L   ++  + +
Sbjct: 120 NERQILELVTVADVAQ 135


>gi|237745942|ref|ZP_04576422.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gi|229377293|gb|EEO27384.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 156

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  T Y IR++    + N  P  I+ ++E   IS+  +  +   L +  I E + G 
Sbjct: 1   MKLSTHTRYAIRIIFELHLAN-SPVSIAALSEQTNISQKVVENVHAILKQNRITEAIIGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RLC+P  +I++ D++   +E      CF +   DCP    C   SV +        
Sbjct: 60  RGGIRLCKPLSEISLGDMIDLFDEGVRFVVCFGNKSNDCPRQRVCETRSVWKTISGKIRQ 119

Query: 121 VLTQYSIECLVRN 133
            L + S+E ++  
Sbjct: 120 ELGKVSLESILDQ 132


>gi|222106516|ref|YP_002547307.1| hypothetical protein Avi_5475 [Agrobacterium vitis S4]
 gi|221737695|gb|ACM38591.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 155

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L+  A +       IS+IA    I + FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTILLELRNGGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L  PA +I I   ++  +       C +        DC    +C +   + +  +A
Sbjct: 62  GGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDDCADPVNCQVRRSMTQVRDA 121

Query: 118 FFDVLTQYSIECLVRNRS 135
              +L   ++E  V   S
Sbjct: 122 IAAILDNMTLEQFVATPS 139


>gi|330446685|ref|ZP_08310337.1| iscR transcriptional regulator IscR transcriptional dual regulator
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490876|dbj|GAA04834.1| iscR transcriptional regulator IscR transcriptional dual regulator
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 145

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + I+E   IS  +L ++   L KAG+V +VRG  GG RL   A  I +  V+ A +ES  
Sbjct: 2   ADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASDIAVGMVIAAVDESVD 61

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
             +C    K DC     C   ++     +     L   ++  L+++  
Sbjct: 62  ATKCHG--KGDCQGGARCLTHTLWHDLSDRISGFLNNITLGELMKDND 107


>gi|317051126|ref|YP_004112242.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
           S5]
 gi|316946210|gb|ADU65686.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
           S5]
          Length = 136

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ +  YG+  ++Y A H D   +I  IA+   I + +L ++L  L K G VE+ RG  G
Sbjct: 4   VSSKGAYGLAAMLYLAQHADKLIQIRDIAKNGGIPQNYLEQLLVQLKKNGFVESTRGAGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL      ITI  +++A E       C   + +D        L            +V 
Sbjct: 64  GYRLAMEPKDITIYQILEALEGEL----CANRYDVDNK-----ALEFFWDDIRRKIQEVF 114

Query: 123 TQYSIECLVR 132
            Q ++  LV 
Sbjct: 115 GQ-TLADLVD 123


>gi|84498351|ref|ZP_00997148.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
 gi|84381851|gb|EAP97734.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
          Length = 155

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ RTDY +R ++    A   +  P  +  +A+   +   FL +I+  L  AG+V + 
Sbjct: 1   MDISARTDYAVRAMLILGEAQQAESGPVSVETLAQRQSLPRKFLEEIVADLRTAGLVTST 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG RGG  L RPA +  + DV +A +           H+     V    L  V      A
Sbjct: 61  RGARGGYSLARPATETVLGDVFRAVDGPLAEVRGLRPHETAYEGVAL-HLPQVWVAVRAA 119

Query: 118 FFDVLTQYSIECLVRNR 134
              VL   S+  ++   
Sbjct: 120 LRAVLDTTSLADVLSGE 136


>gi|114764573|ref|ZP_01443777.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114542949|gb|EAU45969.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. HTCC2601]
          Length = 153

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  D     +  I++   +S  +L ++   L +AG+VE+VRG
Sbjct: 1   MKLSTKGRYAMVALTDIAMQPDGVLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I ++D++ A +E+       A          +  L + L ++L+A  
Sbjct: 61  PGGGYRLARPASEIRVVDILGAVDETVDAMHKGAGASGATSGSRAQSLNNRLWQSLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVFLHQTRLSDVVGN 135


>gi|186683177|ref|YP_001866373.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465629|gb|ACC81430.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 146

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA+   I   +L K+L  + +A IV+++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPKYGPVSVRAIAKRQDIPAPYLEKLLIEMRRASIVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118
             GG +L R   QI+I  +++A  E+  +      H    P      +T S+ ++     
Sbjct: 61  SIGGYQLAREPAQISIGQILEAVGETSHL-----PHHTPAPTQAEDWVTFSLWQRLNQKL 115

Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
            + L   ++  L  +  S +     
Sbjct: 116 KEALYSITLADLYYDARSWQASLGE 140


>gi|302339438|ref|YP_003804644.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636623|gb|ADK82050.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 145

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + RT YG+R L+Y      D   ++ +I+EA  +S+ +L +I++ L  +GI+++ RG
Sbjct: 1   MKFSTRTRYGLRFLIYLGSEGGDRYVQLGEISEAEKVSQKYLEQIVRLLKPSGILDSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG ++    D++ +  + +  E       C    +  C     C    +  +  +   
Sbjct: 61  VTGGYKIAVDPDKVRLDRLFELLEGDLAPINCLREDE-HCERASRCPTLPLWMELDDLVK 119

Query: 120 DVLTQYSIECLVRN 133
           + L + S+  L+RN
Sbjct: 120 NFLKERSLGDLIRN 133


>gi|121535527|ref|ZP_01667335.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
 gi|121305855|gb|EAX46789.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
           carboxydivorans Nor1]
          Length = 146

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A + +        +AE   I + FL KI++ L +AG++++ RG
Sbjct: 1   MQLNQATDYAFRIVLHLACLPSGQVVNGQTLAEQENIPQRFLLKIMRSLTQAGLIKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
             GG  L R  ++ITI D++ A E    +  C A     C       C + +VL +    
Sbjct: 61  TDGGFALARRPEEITIWDIICAIEGEVTIHRCLADRTA-CSKHCTHECPVHAVLGQIQAE 119

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
               L Q     L   R + +++
Sbjct: 120 LVAALRQADFATLASQRRTQEEM 142


>gi|229815527|ref|ZP_04445856.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
           13280]
 gi|229808918|gb|EEP44691.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
           13280]
          Length = 163

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----------------------RISQIAEACCISE 38
           M ++ +  Y +++++Y A     P                        + ++AE   IS 
Sbjct: 1   MLISSKGRYALKLMIYIAAIGGDPVGESISADAVSREALAPRPQTKVSLREVAEREGISL 60

Query: 39  LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
            +L ++++PL+ AG++ +VRG+ GG  L +PA ++   D+++A E       C       
Sbjct: 61  KYLEQLVRPLMNAGLLRSVRGKGGGYVLAKPAAEVRAGDILRAAEGERSTVACEGLDGA- 119

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           C     C                +   ++  L  
Sbjct: 120 CGRSDLCSTVKFWTGLEETIDAYVDGVTLAELAH 153


>gi|108797889|ref|YP_638086.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866984|ref|YP_936936.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768308|gb|ABG07030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
 gi|119693073|gb|ABL90146.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
          Length = 153

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R +M  A    +        IA     SE  + K +  L + G+V   R
Sbjct: 1   MQLTRFTDLGLRTMMLLAAGEVDGQRVTTRTIAAGANASEHHIAKAVARLAELGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V EC       CPL+ +C L   +  A  AF
Sbjct: 61  GRVGGLTLTDAGRDASVGWLVRRLEGDREVIECGGED--PCPLLAACRLRKAMSDAKEAF 118

Query: 119 FDVLTQYSIECLVR 132
           +  L +Y+I  L  
Sbjct: 119 YRELDRYTITDLAA 132


>gi|41408581|ref|NP_961417.1| hypothetical protein MAP2483c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396939|gb|AAS04800.1| hypothetical protein MAP_2483c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 161

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP   I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL + ++  + 
Sbjct: 120 SVLEETTLADVA 131


>gi|307151468|ref|YP_003886852.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7822]
 gi|306981696|gb|ADN13577.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7822]
          Length = 143

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  + +Y +  L+  A   D   P  +++I     I E +L +I   L + G++++ R
Sbjct: 1   MSLPSKVEYALLALLEMASQPDLKKPLTVNEITAKQPIPERYLEQIFASLRRGGLLKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R    IT+L++V   E +  + E      ++  L     +    ++A  A 
Sbjct: 61  GSKGGYVLAREPQDITLLEIVSIIEGNRQIKENMDVSTVEMKL-----IQESWQQANQAA 115

Query: 119 FDVLTQYSIECLVRNRSS 136
             +L QY++  L + R S
Sbjct: 116 QSILGQYTLLDLCKQRES 133


>gi|114569861|ref|YP_756541.1| BadM/Rrf2 family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340323|gb|ABI65603.1| transcriptional regulator, BadM/Rrf2 family [Maricaulis maris
           MCS10]
          Length = 158

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A   +  P  +S IA    IS  +L ++   L +A IV +VRG
Sbjct: 1   MKLSTKGRYAVMAMADLADAAEAGPVTLSDIASRQSISLSYLEQLFAKLRRADIVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
             GG RL R A +I I D++ A +E      C  S    C      C    +  +     
Sbjct: 61  PGGGYRLSRTASEIRISDIILAVDEPLRATRC--SEAKGCLSDGRRCITHDLWDELGRHI 118

Query: 119 FDVLTQYSIECLVRNR 134
           +  L+  ++E ++  R
Sbjct: 119 YLYLSSVTLEDVLERR 134


>gi|159044182|ref|YP_001532976.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911942|gb|ABV93375.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 162

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A    D    +S+IAE   IS  +L ++   L +A +VE+VRG
Sbjct: 1   MKLSTKGRYAMVAMADLAEAPADKLVTLSEIAERQSISLTYLEQLFVKLRRAKLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R  D I + DV++A +E+       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYRLARAPDAIRVSDVLQAVDETVSAMHTGAGASGAKSGSRAQSMTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N+
Sbjct: 121 YVFLHQTRLSDVVTNQ 136


>gi|56963070|ref|YP_174797.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909309|dbj|BAD63836.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 139

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  + +  ++  +    + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMAFLTLNEKNEAIGVEQLAKMQNLSPTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL +   + + LDV++A E    +  C   H    P    C +  V+  A     
Sbjct: 61  VKGGYRLLKRQKETSFLDVIQAIEGQTSLFHCSLDHNEL-PHNHGCLIEQVMMNAEAKMK 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L    I  + R     +
Sbjct: 120 ADLDATYIADIARQMKEKR 138


>gi|149185219|ref|ZP_01863536.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
 gi|148831330|gb|EDL49764.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
          Length = 136

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY +  +   A H        S++A    +    + K++  L  AG++ +VRG
Sbjct: 1   MRLSNLADYAVVTMSQAARHCGGGRVSASELAAETGLPAPTVQKLVSKLTAAGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG++L RPA  IT+ D+V+A E    +  C      DC +   C +            
Sbjct: 61  AGGGLQLARPAAAITLADIVEAVEGPIALTACI--EGSDCSVDHDCRVRPHWPLVNETLR 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   S+  L + + 
Sbjct: 119 SALAGISLVQLAQEKE 134


>gi|282864294|ref|ZP_06273350.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
 gi|282560781|gb|EFB66327.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
          Length = 143

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L KAG+V + RG 
Sbjct: 1   MHISAKADYATRALLELACEPGRPLTCEAIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA+ IT+LDVV+A +             +D P   +  L  V R+       
Sbjct: 61  EGGYWLGRPAEDITLLDVVRAVDGEVLTLRGEPLADLDYP-GPAHPLPGVWREVEARAAA 119

Query: 121 VLTQYSIECLVRNRSS 136
           +L   S+  L+ + ++
Sbjct: 120 LLGGQSLTALLASGAA 135


>gi|88608399|ref|YP_506194.1| rrf2/aminotransferase, class V family protein [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600568|gb|ABD46036.1| rrf2/aminotransferase, class V family protein [Neorickettsia
           sennetsu str. Miyayama]
          Length = 530

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT +T Y I   +  A+H+      + S+IA    ISE FL  IL PL K GI+E++ G 
Sbjct: 10  LTAKTRYAIAASIDIALHSKGRKYVKTSEIASRQKISEKFLELILPPLKKQGILESLLGP 69

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119
            GG RL +  D I ++ ++KA  ++  +  C    +  C      C   ++       F 
Sbjct: 70  GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 129

Query: 120 DVLTQYSIECLVRN 133
           +     +++ ++ +
Sbjct: 130 NFFESVTLQDIISD 143


>gi|134101075|ref|YP_001106736.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004105|ref|ZP_06562078.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913698|emb|CAM03811.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 171

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++  ++G+      A    D       +AE   + E +L K L  L +AG++    G
Sbjct: 1   MKLSQGVEWGLHCTALIAQAPEDTALSRRSLAEHHGLPEAYLAKHLNALTRAGLLTATPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
            RGG RL RPA++IT+LDV+ A E       C         A     C     CG+ +V+
Sbjct: 61  PRGGFRLARPAERITVLDVLDAVEGDAAPFVCQEIRQRGTGAVPPEKC--TSPCGIAAVM 118

Query: 112 RKALNAFFDVLTQYSIECLV 131
            +A  A+ D L + +I  LV
Sbjct: 119 AQAHEAWRDTLRRTTIADLV 138


>gi|209963829|ref|YP_002296744.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209957295|gb|ACI97931.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 162

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY + VL   A  +   +  + +AE   +    + K+L+ L + GI+ + RG  
Sbjct: 3   RLSKLTDYAVVVLTAMARSDAPVHTAASLAERTGLPVPTVQKLLKQLARGGILASQRGAA 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R    +T+ ++++A +    + +C    +  C +   C       K   A    
Sbjct: 63  GGYALLREDTDVTVAEIIEAIDGPIALTDCVDGAEGACGVQSLCPRRGSWDKVNEAVRRA 122

Query: 122 LTQYSIECLV 131
           L   S+  + 
Sbjct: 123 LDGVSLADMA 132


>gi|194364780|ref|YP_002027390.1| transcriptional regulator TrmB [Stenotrophomonas maltophilia
           R551-3]
 gi|194347584|gb|ACF50707.1| transcriptional regulator, TrmB [Stenotrophomonas maltophilia
           R551-3]
          Length = 151

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK TDY   VL   A         +++AE   +    + K+L+PL +AG+VE +RG R
Sbjct: 3   RVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGVR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R A +I++ +VV+A E    + EC   H   C +   CG  S  R   +   + 
Sbjct: 63  GGYRLTRAAIEISLFEVVEAMEGPLALTECSHDHH-QCGMAPKCGARSSWRLINDVVSEA 121

Query: 122 LTQYSIECLV 131
           L   ++  ++
Sbjct: 122 LRDVTLAQIL 131


>gi|78186422|ref|YP_374465.1| hypothetical protein Plut_0538 [Chlorobium luteolum DSM 273]
 gi|78166324|gb|ABB23422.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
           DSM 273]
          Length = 136

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A    D    + ++AE    S  FL K +Q L +AGI  +V+G 
Sbjct: 3   QVSRKFEYGLHAVAYLASRGVDRVVTVKEMAEEIGFSPEFLAKAMQSLTRAGIASSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L R A+ IT+ D+  A E +  +  C      +C +  SC     +    N    
Sbjct: 63  KGGYQLARKAESITVADIGTAIEGAPHLVRCVV-KADNCEIYSSCPHRGYMTSLQNRIQG 121

Query: 121 VLTQYSIECLVRNRS 135
           +L   +++ L+   +
Sbjct: 122 LLASTTVQALLDTET 136


>gi|172057254|ref|YP_001813714.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171989775|gb|ACB60697.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 130

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IRVL++  +H     +I ++A+   IS+  L KI+  L + G++ + +GR
Sbjct: 1   MKMTRSTDYAIRVLLFTTLHPTRLVQIQEVADYYDISKNHLMKIVHALSRFGLITSYQGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L +   +IT+ ++V+  E      E F     D  L     +      A   F +
Sbjct: 61  NGGFKLAKDPSEITLGEIVQLFE-KVSYLESFPEIHEDENLEN---MKEAFDYAFLQFSE 116

Query: 121 VLTQYSIECLVR 132
            L  YS++ L+ 
Sbjct: 117 ALKAYSLQDLIH 128


>gi|188582606|ref|YP_001926051.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346104|gb|ACB81516.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           populi BJ001]
          Length = 188

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           HL+  TDYG+R+LM   +           IA+   IS   L KI Q LV+AG+VE  +GR
Sbjct: 20  HLSLHTDYGLRLLMRLTLVEPGAWIATPTIAQRFGISVHHLQKIAQALVRAGVVEARQGR 79

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +    I +  +V   E    V +C    +  C L+  C L   L  A  AFF 
Sbjct: 80  AGGVRLAQNPRDIRLGRLVAELEGVGTVVDC---RRDPCRLLSRCRLKWALDAAEQAFFL 136

Query: 121 VLTQYSIECLVRN--RSSIKKIFNA 143
            L + ++  +      +++  +F+ 
Sbjct: 137 ELDRLTLADVAAGSTAAALGALFDE 161


>gi|326387606|ref|ZP_08209212.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207652|gb|EGD58463.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 150

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T Y IR L + A        R+  IAEA  I   FL  IL  + + GIV + RGR 
Sbjct: 2   LSQKTRYTIRALQHLADAFGQGSVRLDAIAEAQNIPRKFLTVILSEMAREGIVISQRGRD 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHK----IDCPLVGSCGLTSVLRKALNA 117
           GG  L  P   I   D+++    S  +  C + +      +C     C L  ++ +  + 
Sbjct: 62  GGYELALPPVDIRYGDIIRLCRGSLALVPCASRNAHETCANCLPEEECRLRGLMLQLRDE 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              +L + ++   ++      ++
Sbjct: 122 TAAILDRITLADPIQVEPPFDQM 144


>gi|70726295|ref|YP_253209.1| hypothetical protein SH1294 [Staphylococcus haemolyticus JCSC1435]
 gi|68447019|dbj|BAE04603.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 140

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENSLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PAD+I   D+++  E    + E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPADEIKAGDIIRLLEGPITIVESIESEPP--------AQKQLWLRMRDAVR 112

Query: 120 DVLTQYS---IECLVRNRSSIK 138
           +VL   +   +   V     + 
Sbjct: 113 EVLDNTTLKYLADYVETDDKLN 134


>gi|291286176|ref|YP_003502992.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883336|gb|ADD67036.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 154

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + +T Y ++ L Y A  HN     IS IAE   I + FL  IL  L   G + +  G+ 
Sbjct: 2   FSMKTVYALKALQYLAESHNQGNVMISVIAENEGIPKKFLETILLTLKNEGFLTSRIGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKALN 116
           GG +L    ++I + D++ A E +  +  C            C     CG   +L K   
Sbjct: 62  GGYKLALAPNEINLKDIISALEGNIALIPCAVHETGEKKCDQCRDYELCGTRLILTKISE 121

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              DVL+  ++  ++      ++
Sbjct: 122 RLADVLSSNTLADMIGETEKARQ 144


>gi|218248538|ref|YP_002373909.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           8801]
 gi|257061606|ref|YP_003139494.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           8802]
 gi|218169016|gb|ACK67753.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           8801]
 gi|256591772|gb|ACV02659.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           8802]
          Length = 147

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R+ Y ++ L+  ++  +  P  +  IA    +   +L K+L  + ++G+V++VRG
Sbjct: 1   MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIALRQDLPAPYLEKLLIEMRRSGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L     QI++  +++A  E+         ++ D          S+ ++      
Sbjct: 61  SQGGYQLAYQPSQISLGQILEAVGETIEP---LPGYQPDIEQGSDWVTFSLWKRLHEKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L + ++  L  +  S +     
Sbjct: 118 EALYKITLADLYYDARSWQASLGE 141


>gi|126643101|ref|YP_001086085.1| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
          Length = 144

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           MY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+ GG+RL   A  + 
Sbjct: 1   MYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGKGGGIRLNPKALDLK 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +  +V+  +    + EC   +   C L   CGL  +L +AL +F+  L QY++  +++  
Sbjct: 61  LGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQYTLGEVLQQP 117

Query: 135 SS 136
            S
Sbjct: 118 KS 119


>gi|220909499|ref|YP_002484810.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7425]
 gi|219866110|gb|ACL46449.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7425]
          Length = 145

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++  +  P  +  IA+   +   +L K+L  + +AG+V ++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPNYGPTSVQAIAQRQDLPAPYLEKLLIAMRRAGLVHSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R   QI++  +++A  ES      FA         G     ++ ++      
Sbjct: 61  AQGGYQLARSPAQISLAQILEAVGESIEPL--FAQRAAQ---SGDWLTLTLWKRLQQKLR 115

Query: 120 DVLTQYSIECL 130
           + L   ++E L
Sbjct: 116 ESLYTITLEDL 126


>gi|312129033|ref|YP_003996373.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
           byssophila DSM 17132]
 gi|311905579|gb|ADQ16020.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
           byssophila DSM 17132]
          Length = 139

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K+  Y ++ L    ++ +   P  IS+I+E   I + FL  IL  L   GI+++ +G+
Sbjct: 2   ISKKAKYALKALTRLTLNYETRKPLLISEISETENIPKKFLEAILLELRNNGILQSQKGK 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
            GG  L  P  ++ I  +++  +       C    F     DC    +C +  ++++  +
Sbjct: 62  GGGYLLKLPPAEVKIARIIRVIDGPIAPLLCVSLHFYDKCEDCSSEEACKIRPLMQQIRD 121

Query: 117 AFFDVLTQYSIECL 130
           A   V    +++ L
Sbjct: 122 ANLTVYENTTLQDL 135


>gi|300865571|ref|ZP_07110350.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300336443|emb|CBN55500.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 147

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  +      P  +  IA    +   +L K+L  + ++G+V +VRG
Sbjct: 1   MKLTTRGHYSVKALLDLSSQPGYGPASVKAIASRQELPAPYLEKLLIEMRRSGLVLSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R    I++  +++A  E+       A H  D  +       S+  +      
Sbjct: 61  TQGGYQLARRPASISLGQILEAVGETIEP---LAGHSPDATVAEDWVTFSLWNRLHKKIT 117

Query: 120 DVLTQYSIECL 130
           + L   S+E L
Sbjct: 118 EALYSISLEDL 128


>gi|116624954|ref|YP_827110.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228116|gb|ABJ86825.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 141

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH + + +Y ++ +   A   +  P RI+ IA+   I + FL  IL  L +AG VE+ RG
Sbjct: 1   MHTSVKGEYALQAIFDLASQRSGEPIRIADIAQRQKIPQKFLELILASLKQAGFVESRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPAD +T+ +V++  E                    +   + +  +   A  
Sbjct: 61  AEGGYLLSRPADSLTVGEVLRYVEGP-------QGKSRKGRKGPATPFSDMWEQVDAAVS 113

Query: 120 DVLTQYSIECLVR--NRSSIKKIFN 142
            V+ + +   L R       K + N
Sbjct: 114 SVIDKTTFADLQRAWQEQQNKYVLN 138


>gi|255020951|ref|ZP_05293007.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969742|gb|EET27248.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           caldus ATCC 51756]
          Length = 148

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H D     ++ I++   IS  +L ++   L + G+VE+VRG  GG RL  P  Q
Sbjct: 1   MLDLALHQDGGVVTVADISQRQQISVAYLEQLFGRLRRRGLVESVRGPGGGYRLADPTAQ 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLV 131
           I +  +V+A  ES    +C       C   G  C    +           L   ++  LV
Sbjct: 61  IPLTQIVEAVNESIHTTQCGGDPVQCCKGEGQQCLTHDLWEALGQQIAAFLGGITLAQLV 120

Query: 132 RNRS 135
             + 
Sbjct: 121 AEQR 124


>gi|315502962|ref|YP_004081849.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|315409581|gb|ADU07698.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 145

 Score =  126 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +R+ M  A        + ++A    +    + K++Q L + G++ T+RGR
Sbjct: 1   MRLNRSTDMALRIAMLTAASP-VRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV     A  IT+  VV+A E    V +C    +  CPLV  C L   LR+A  AF  
Sbjct: 60  SGGVAFAEHAGDITVGRVVRAFEGDGEVVDCA---QPVCPLVAECRLRGELRRAQAAFLA 116

Query: 121 VLTQYSIECLVR 132
           VL    +  LV 
Sbjct: 117 VLDGVRLGDLVD 128


>gi|154503668|ref|ZP_02040728.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149]
 gi|153795768|gb|EDN78188.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149]
          Length = 486

 Score =  126 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR++ Y A  N      ++++    I   ++ KI + L +  IV+   G 
Sbjct: 1   MQLTNTTDYAIRIVCYLASEN-KVITTAELSRELNIPASYIPKITKQLKEKEIVKAAEGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GG  L +  ++I+++DV+  TE +  ++ C       C       C +  VL    N +
Sbjct: 60  NGGYMLEKRPEEISLMDVINCTESTMAISRCLEKDGY-CSRNYSDCCKVHKVLLDLQNTY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    I  +++
Sbjct: 119 NNRLENVKISDIIQ 132


>gi|300021837|ref|YP_003754448.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523658|gb|ADJ22127.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 165

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+T + IR+L+ C + ND   +++ +++   +++  +FKI+  L  AG +  VRG 
Sbjct: 1   MRLTKQTGHAIRILIDCTLANDELVKVADVSDRLGVTKQNVFKIVHILSHAGFLSAVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGVRL +PA  I I DVV+A E +    E                + ++   AL+AF  
Sbjct: 61  NGGVRLAKPATSIKIGDVVRAIEVTRVQVE--GGRGRKTVDNDPASINAMFDDALSAFIS 118

Query: 121 VLTQYSIECLVRNRSSI 137
           VL Q+++  L   +S +
Sbjct: 119 VLDQHTLAELASQKSPL 135


>gi|311894108|dbj|BAJ26516.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 145

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYAARALVELACDTGRPLTCEAIASSQEIPFRFLKSVVGDLRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA +IT+LDVV+A +             +  P   +  L  + R+      +
Sbjct: 61  EGGYWLGRPAAEITLLDVVRAVDGELITLRGEPLTGLAYP-GPADALPGIWREVEERAGE 119

Query: 121 VLTQYSIECLV 131
           VL   ++  LV
Sbjct: 120 VLAGTTVAALV 130


>gi|37521489|ref|NP_924866.1| hypothetical protein glr1920 [Gloeobacter violaceus PCC 7421]
 gi|35212486|dbj|BAC89861.1| glr1920 [Gloeobacter violaceus PCC 7421]
          Length = 148

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ R  Y ++ ++   IH  D P  I QIA    IS+ FL ++L  L ++G V +VRG 
Sbjct: 3   KLSTRGHYSVKAMLDLTIHRHDPPQPIRQIARRQNISKHFLEQLLILLRQSGFVRSVRGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R   QIT+ ++++A  +           + D          ++  +   +   
Sbjct: 63  QGGYVLARLPAQITLGEILRAVGDGMAP---LGRIERDGTQAEDWVTMALWSRVHRSVEA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            L + ++E L  +  S +   + 
Sbjct: 120 ALDRITLEDLYHDARSRQAALSE 142


>gi|256392947|ref|YP_003114511.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256359173|gb|ACU72670.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY +RV++  A H     + S + +   +   F+  IL  L +A +V + RG 
Sbjct: 1   MHISAKADYAVRVMLELAAHGPGVVKASVVIDHQDLPRKFIEAILVELRRADLVRSHRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA  I+I  VV+A +           H+ +        L      A  A   
Sbjct: 61  DGGYTLARPAAAISIGSVVRAVDGPLAEVRGLRPHETEYAGAAE-HLADCWVAARAALRK 119

Query: 121 VLTQYSIECLVRNR 134
           VL + S+  ++  R
Sbjct: 120 VLDETSLAQVLDGR 133


>gi|218283509|ref|ZP_03489499.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
 gi|218215777|gb|EEC89315.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A HN      S++++   I+  ++ KI + L  A I+    G 
Sbjct: 1   MQLKSSTDYAIRIVCYLATHNG-MISTSELSKQLYIATTYIPKIAKKLKDANIIVACEGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
           +GG  L + A+ I++ +++   EE+  +  C       C       C +  VL    N +
Sbjct: 60  KGGYTLAKRAEDISLKEIISCMEETMAINRCLERDGF-CSRNAVNHCRVHKVLLDVQNTY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    +  L+R
Sbjct: 119 NNKLENIKVSDLIR 132


>gi|54293583|ref|YP_125998.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
 gi|53753415|emb|CAH14868.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
 gi|307609396|emb|CBW98885.1| hypothetical protein LPW_06721 [Legionella pneumophila 130b]
          Length = 153

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG  V++Y A H         IA    ++   + KIL+ L  AG++ +VRG  
Sbjct: 3   RVSKLADYGTVVMVYLAKHPQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I++  ++ A EE     EC +    DC L G C +    R   +A    
Sbjct: 63  GGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   S+E L +     + +
Sbjct: 122 LDSVSLEALAKPTLPTRDV 140


>gi|221315013|ref|ZP_03596818.1| hypothetical protein BsubsN3_14952 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
          Length = 110

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG
Sbjct: 1  MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
            GG  L    D IT  D+++  E    + +C
Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKC 92


>gi|120405372|ref|YP_955201.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958190|gb|ABM15195.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 158

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIELATADDGALVKTDDLAKAQGIPPQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RPA  I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL Q S+  + 
Sbjct: 120 SVLEQTSVADVA 131


>gi|254480074|ref|ZP_05093322.1| rrf2 family protein (putative transcriptional regulator) [marine
           gamma proteobacterium HTCC2148]
 gi|214039636|gb|EEB80295.1| rrf2 family protein (putative transcriptional regulator) [marine
           gamma proteobacterium HTCC2148]
          Length = 144

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A+H    P  ++ I+    IS  +L ++   L +  +V +VRG  GG RL R   +
Sbjct: 1   MLDLALHGSSGPVSLADISGRQDISLSYLEQLFAKLRRNDLVTSVRGPGGGYRLSRHTGE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I +  +V A  E+     C      DC     C    +     +     L+Q S+  LV 
Sbjct: 61  IFVAQIVDAVNEAVDATGC--GGTSDCQQGEVCLTHHLWCDLSDQIHGFLSQISLANLVE 118

Query: 133 NRS 135
            + 
Sbjct: 119 RKE 121


>gi|67459239|ref|YP_246863.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           felis URRWXCal2]
 gi|67004772|gb|AAY61698.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           felis URRWXCal2]
          Length = 139

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A  +   P  +++I+    IS  +L +I   L KA +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    ++I I D++ A  E+F +  C+      C P    C    + +      
Sbjct: 61  SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWKGLSKHI 120

Query: 119 FDVLTQYSIEC 129
            D     SI+ 
Sbjct: 121 RDYFENISIKD 131


>gi|157691453|ref|YP_001485915.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680211|gb|ABV61355.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 145

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++  +        +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSATYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  + I+ LDV++A E    +  C   H    P  G C +   ++       
Sbjct: 61  AKGGYTILKKKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHNG-CLIEQAMQDVETKMQ 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L+Q  +  +       +K
Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139


>gi|323518180|gb|ADX92561.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 164

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D P     +AE   +S  F+ KI   L KAG+V    G RGG  L R A +I+ LD+V
Sbjct: 3   NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIV 62

Query: 80  KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            A E    + EC         F +   D    G C + +V+ +A  A  D L  +++  +
Sbjct: 63  NAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122

Query: 131 VRN 133
              
Sbjct: 123 ADR 125


>gi|240169536|ref|ZP_04748195.1| hypothetical protein MkanA1_09496 [Mycobacterium kansasii ATCC
           12478]
          Length = 161

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A        +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATAPTGNLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP  +I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  REGGYELARPGSEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLVR 132
            VL + ++  +  
Sbjct: 120 SVLEETTLADVAA 132


>gi|113475528|ref|YP_721589.1| BadM/Rrf2 family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110166576|gb|ABG51116.1| transcriptional regulator, BadM/Rrf2 family [Trichodesmium
           erythraeum IMS101]
          Length = 147

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++   + P  + +IA    I   +L K+L  + + G+V + RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQQSNTPVSVKEIAVRQNIPVAYLEKLLIEMRRGGLVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L +   QI++ +++++  E+         +  +           +  +      
Sbjct: 61  AQGGYQLAKLPAQISLGEILESVGETIEP---LFKYTPNASHAEDWVTYCIWHRIHKKLS 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L   S+E L  +  S + +   
Sbjct: 118 EALYNISLEDLYYDVRSWQTVVGE 141


>gi|294083583|ref|YP_003550340.1| BadM/Rrf2 family transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663155|gb|ADE38256.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 164

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 60/129 (46%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L + TDY I VL   A   D     + +AE   + +  + K+ + LV A ++ T RG  
Sbjct: 3   RLNRMTDYAIVVLGALAHKRDETVATALLAELTGLKQPTVAKVAKNLVAADLLVTQRGVN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA  I+++D+V+A E    V +C       C +   C + +   +   A    
Sbjct: 63  GGYRLVRPARSISLVDIVEAMEGPIAVTDCVDGAPDPCAVTHCCFMANNWNRVNLAIRGA 122

Query: 122 LTQYSIECL 130
           L   ++E L
Sbjct: 123 LEAVTLEDL 131


>gi|125654633|ref|YP_001033827.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464902|ref|YP_001041878.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221634495|ref|YP_002523183.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332561319|ref|ZP_08415634.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77386293|gb|ABA81722.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126106717|gb|ABN79242.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221163368|gb|ACM04330.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|332274118|gb|EGJ19435.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 169

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A        P RI  IA+     + FL  IL  +  AG + + RG
Sbjct: 2   ITQKMKYALKALMVLAEEKSGDRRPLRIEDIAQRSGTPKRFLEHILLDIRNAGYIASTRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   Q+ + ++++  +       C +        DC    +C +  V     
Sbjct: 62  RSGGYLLIKEPAQVPLSELLRMIDGPIAPLPCLSRRSYQKCEDCTDEETCRIRKVFAGIF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LV   ++ ++I  A
Sbjct: 122 WSYLVLIDSLTLADLVGVPAAAEQILAA 149


>gi|290960745|ref|YP_003491927.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260650271|emb|CBG73387.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 152

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R ++  A+  D  P +   IA    I   FL  IL  L + G+V + RG
Sbjct: 1   MRISARADYAVRAVLEVAVRQDGGPVKAEVIATVQEIPHKFLEGILGDLRRGGLVTSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R    IT+ DV++A +             +         L  +         
Sbjct: 61  GSGGYRLAREPAAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRANVR 119

Query: 120 DVLTQYSIECLVR 132
            +L   ++  +  
Sbjct: 120 RILEGVTVADIAA 132


>gi|160901533|ref|YP_001567114.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359177|gb|ABX30791.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
           SJ95]
          Length = 150

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M LT ++ Y IR L              +    I++IAE+  +S+ FL KI   L KA I
Sbjct: 1   MSLTVKSCYAIRGLYEMYKLQNRNEDEKNTKISIAKIAESSGVSQEFLAKIFAELKKAKI 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V + +G+ GG    +  ++I + ++V+  E      +C +  +  C    +C +  V ++
Sbjct: 61  VSSEKGKFGGFYFTKAPEKINLSEIVEVLEVPLNSYDCVSGGE--CENQKNCPVEFVWKR 118

Query: 114 ALNAFFDVLTQYSIECLVR 132
             +A F+ L++ +++ ++ 
Sbjct: 119 VQDAIFNELSKITLKDVIE 137


>gi|302869746|ref|YP_003838383.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|315503772|ref|YP_004082659.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|302572605|gb|ADL48807.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
 gi|315410391|gb|ADU08508.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 147

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA----------IHNDYPNRISQIAEACCISELFLFKILQPLVK 50
           M+++ R DY +R ++  A                 + + +AE+  I   FL  IL  L +
Sbjct: 1   MYISARADYALRAMLAVADAAVTTGDPAAGGGELVKAASLAESQGIPLSFLQGILLDLRR 60

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
           AG++ + RG  GG  L RP D+I++ DV++A   +        + +     V + GL  V
Sbjct: 61  AGLLHSHRGTEGGYALTRPPDEISVGDVLRAVGGAITSVRGIPADRAGYHGVAT-GLRDV 119

Query: 111 LRKALNAFFDVLTQYSIECLVRNRS 135
                 A   V+ + ++  L+ +R+
Sbjct: 120 WLAVDGAIALVVDRTTLADLLSDRA 144


>gi|302866552|ref|YP_003835189.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569411|gb|ADL45613.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
          Length = 145

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TD  +R+ M  A        + ++A    +    + K++Q L + G++ T+RGR
Sbjct: 1   MRLNRSTDMALRIAMLTAASP-VRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV     A  IT+  VV+A E    V +C    +  CPLV  C L   LR+A  AF  
Sbjct: 60  SGGVAFAEHAGDITVGGVVRAFEGDGEVVDCA---QPVCPLVAECRLRGELRRAQAAFLA 116

Query: 121 VLTQYSIECLVR 132
           VL    +  LV 
Sbjct: 117 VLDGVRLGDLVD 128


>gi|218887632|ref|YP_002436953.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758586|gb|ACL09485.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 152

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT RT Y  RVL+  A+H  + P   + ++    IS  FL +IL+ L +AG+  + RG
Sbjct: 1   MKLTARTRYAARVLVALAVHGTEGPLTTTALSRHTDISVQFLEQILKDLRRAGLTASARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV-LRKALNAF 118
             GG RL  P  +I++  VV+  E    +AE       D P      LT +   +A +A 
Sbjct: 61  AMGGHRLALPPTKISLGTVVRLMEGGIRIAE-----HCDLPATPGDRLTCLGWTRAADAV 115

Query: 119 FDVLTQYSIECLVRNRSSI 137
              L   +++ L +    +
Sbjct: 116 ESALDSITLDDLAKGLPDL 134


>gi|111019257|ref|YP_702229.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818787|gb|ABG94071.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 158

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A+  D        IAE   +S     K++  L + GIV+  RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYAHAAKVITRLSELGIVDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       ++  + +  E    V +C       CPL   C L S LR+A NAFF
Sbjct: 61  RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSGCLLRSALRRAQNAFF 118

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   +IE L R+ + 
Sbjct: 119 ESLDALTIEDLTRSPTG 135


>gi|78358152|ref|YP_389601.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220557|gb|ABB39906.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 146

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ RT Y  R+L+  A+H+ + P R S ++++  ++  F+ +IL+PL K G+V +VRG
Sbjct: 1   MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L     ++T+  +V+  E    + EC +  +  C     C    V  +   A  
Sbjct: 61  AAGGHLLAADPQELTLGHIVRVMEGGIHMTEC-SRDETACERAHQCRTRQVWIRISRAME 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   ++  L+++ S I
Sbjct: 120 QELEAITLSDLMQDASII 137


>gi|54296620|ref|YP_122989.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
 gi|53750405|emb|CAH11799.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
          Length = 153

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG  V++Y A H+        IA    ++   + KIL+ L  AG++ +VRG  
Sbjct: 3   RVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I++  V+ A EE     EC +    DC L G C +    R   +A    
Sbjct: 63  GGYRLQRPAAEISVSQVIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   S+E L +     + +
Sbjct: 122 LDSVSLEALAKPTLPTRDV 140


>gi|302866226|ref|YP_003834863.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|315502784|ref|YP_004081671.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|302569085|gb|ADL45287.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
 gi|315409403|gb|ADU07520.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 151

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R  +  A           IA    +   FL  +L  L +AG+V   RG 
Sbjct: 1   MQISARGDYAVRAALSLATAYPTLLSTQAIAAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  +ITI  V++A +            +          L  +      +   
Sbjct: 61  EGGYTLARPPREITIGHVLRAVDGPLAGVRGLRPEETRYEGAAE-NLPRLWVAVRASVRR 119

Query: 121 VLTQYSIECLVRNR 134
           V+ + S++ LV  R
Sbjct: 120 VVDEVSLDELVSGR 133


>gi|194016021|ref|ZP_03054636.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012376|gb|EDW21943.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 145

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++  +        +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSSTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  + I+ LDV++A E    +  C   H    P  G C +  V++       
Sbjct: 61  AKGGYAIMKQKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHDG-CLIEQVMQDVETKMQ 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L+Q  +  +       +K
Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139


>gi|88811720|ref|ZP_01126974.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
 gi|88791111|gb|EAR22224.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
          Length = 153

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 59/129 (45%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + + TDYGI +L   A         +++A+   + +  + KIL+ L + GI+ + RG +
Sbjct: 3   RINRETDYGISILTLMARRRRERFNAAELAQWRRLPQPIVSKILKHLARNGILISYRGVQ 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R  ++I++ D++ A E    + EC       C    +C +++  R         
Sbjct: 63  GGYALARSPEEISLADIIVALEGPISLTECVIGGADACQYGANCAVSARWRHINQKIRMA 122

Query: 122 LTQYSIECL 130
           L   S+  +
Sbjct: 123 LEAISLAEM 131


>gi|52840837|ref|YP_094636.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148360750|ref|YP_001251957.1| rrf2 family transporter protein [Legionella pneumophila str. Corby]
 gi|52627948|gb|AAU26689.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|148282523|gb|ABQ56611.1| rrf2 family protein [Legionella pneumophila str. Corby]
          Length = 153

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG  V++Y A H+        IA    ++   + KIL+ L  AG++ +VRG  
Sbjct: 3   RVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVS 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RPA +I++  ++ A EE     EC +    DC L G C +    R   +A    
Sbjct: 63  GGYRLQRPAAEISVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETA 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   S+E L +     + +
Sbjct: 122 LDSVSLEALAKPTLPTRDV 140


>gi|257784030|ref|YP_003179247.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
 gi|257472537|gb|ACV50656.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
           20469]
          Length = 167

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y   ++ +   R+   AE   ISE +L K    L KAGIV +  G
Sbjct: 1   MKFSIGIEYALHCLLYMVDLNENKSIRVRDFAEFQGISESYLSKTFTQLSKAGIVLSSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL----------VGSCGLTS 109
            +GG RL +    I+  D+V+A E    + +C      +  L             C ++ 
Sbjct: 61  IKGGYRLAKSPQSISFWDIVEAIEGKDPLFQCHEIRLSNSTLKEIGVLQKADKSPCLISG 120

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +        L++ ++  L
Sbjct: 121 VMHQGEKEMKKFLSKKTLRWL 141


>gi|118472493|ref|YP_885725.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173780|gb|ABK74676.1| transcriptional regulator, BadM/Rrf2 family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 153

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MHLT+ TD G+R LM  +     D       IA++   SE  + K +  LV+ G+V   R
Sbjct: 1   MHLTRFTDLGLRTLMLLSAGESQDQRVTTRTIAKSANASEHHVAKAVSKLVEMGMVHARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       +I  +V+  E    V EC       CPL+ +C L   L +A  AF
Sbjct: 61  GRVGGLELTEAGRTASIGRLVRELEGDREVIEC--GGAAPCPLIAACRLRRALAEAKEAF 118

Query: 119 FDVLTQYSIECL 130
           +  L +Y++  L
Sbjct: 119 YRELDRYTVTDL 130


>gi|210632890|ref|ZP_03297589.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
 gi|210159358|gb|EEA90329.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
          Length = 150

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
           M ++ +  Y +++++Y A                 + ++AE   IS  +L ++++PL+ A
Sbjct: 1   MLISSKGRYALKLMIYIAAIGGDPAAGAKAAPAVSLREVAEREQISLKYLEQLVRPLMNA 60

Query: 52  GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G++ +VRG+ GG  L  PA  I   D+++A E       C    +  C     C      
Sbjct: 61  GLLRSVRGKGGGYVLAVPAQDIRAGDILRAAEGERSTVAC-EGLEGTCGRSDLCSTVKFW 119

Query: 112 RKALNAFFDVLTQYSIECLVR 132
                     +   ++  L  
Sbjct: 120 TGLEETIEAYVDGVTLAELAH 140


>gi|291460624|ref|ZP_06600014.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416815|gb|EFE90534.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 167

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L+Y A +  +   RI  ++    ISE +L K    L KAGI+ +  G
Sbjct: 1   MKFSVAVEYALHGLIYMAGLEENKSIRIQDMSRFQGISESYLSKTYAKLAKAGIISSAAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-------------SCG 106
            +GG RL +PA+QI+  DV++A E    +  C    ++ C  +               C 
Sbjct: 61  AKGGYRLSKPAEQISFWDVIEAIEGKEPLFRC---EELRCKSISVNIDALPEEYTNTPCL 117

Query: 107 LTSVLRKALNAFFDVLTQYSIECL 130
           ++ V+  A N     L+  +I  L
Sbjct: 118 ISRVMHDAENEMKRYLSGKNIGWL 141


>gi|329934459|ref|ZP_08284538.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
           family [Streptomyces griseoaurantiacus M045]
 gi|329306055|gb|EGG49910.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
           family [Streptomyces griseoaurantiacus M045]
          Length = 152

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 1/144 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH++ + DY  R L+  A     P     IA +  I   FL  ++  L +AG+V + RG 
Sbjct: 1   MHISAKADYATRALLELAREPSRPLTCEAIASSQHIPFRFLKSVVGELRRAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA+ IT+LDV  A +             +D P   + GL +V R+       
Sbjct: 61  EGGYWLGRPAEAITLLDVAHAVDGELITLRGEPLTGLDYP-GPASGLPAVWRRIEEEAAA 119

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           +L   ++  L+   +S      +G
Sbjct: 120 LLRSTTLTSLLPGEASAPLPAGSG 143


>gi|146279770|ref|YP_001169928.1| hypothetical protein Rsph17025_3759 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558011|gb|ABP72623.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 158

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A          RI  IA      + FL  IL  +  AG + ++RG
Sbjct: 2   ITQKMKYALKALMVLAEERAGERRALRIEDIAARSGTPKRFLEHILLDIRNAGFIASLRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +   QI + D+++  +       C +        DC    +C +  V  +  
Sbjct: 62  RSGGYLLIKEPSQIPLSDLLRMIDGPIAPLPCLSRRSYQRCEDCTDEAACRIRKVFAEIF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  LVR  ++ ++I  A
Sbjct: 122 WSYLLLIESLTLADLVRTPAAAEQIMAA 149


>gi|270158822|ref|ZP_06187479.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
 gi|289166385|ref|YP_003456523.1| hypothetical protein LLO_3073 [Legionella longbeachae NSW150]
 gi|269990847|gb|EEZ97101.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
 gi|288859558|emb|CBJ13523.1| putative conserved hypothetical protein [Legionella longbeachae
           NSW150]
          Length = 153

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG  V++Y A H         IA    ++   + KIL+ L  AG++ +VRG  
Sbjct: 3   RISKLADYGTVVMVYLARHAQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVT 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L RPA +I++  ++ A EE     EC ++H   C L   C +    R    A    
Sbjct: 63  GGYQLRRPATEISVSQIIFALEEHRGFTEC-SAHPNGCSLQDVCTIQGNWRLISQAIETA 121

Query: 122 LTQYSIECLVR 132
           L   S+  L +
Sbjct: 122 LDSVSLATLAK 132


>gi|226363891|ref|YP_002781673.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226242380|dbj|BAH52728.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 154

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++   ++ +   +  +   + P   +++A+   +S+ +L K LQ L +AG+V    GR
Sbjct: 3   MKISGGVEWSLHCCVVLS-QAEGPVPTARLADLHGVSKSYLAKHLQSLARAGLVHPTEGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R    IT+LDVV+A + +     C         A+    C     CG+  V+ 
Sbjct: 62  DGGYVLTRAPADITVLDVVQAVDGAGPAFRCTEIRQQGLLAAPPEQCK--TPCGIAKVMA 119

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFN 142
           +A  A+   L+  +I  L    + +++++   
Sbjct: 120 EAERAWRASLSGVTIADLAATLDLTALRRTLE 151


>gi|77464012|ref|YP_353516.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462857|ref|YP_001043971.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558886|ref|ZP_08413208.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77388430|gb|ABA79615.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides 2.4.1]
 gi|126104521|gb|ABN77199.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276598|gb|EGJ21913.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 155

 Score =  125 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     +    ++++++   IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L RPA+ I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARPAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 -FFDVLTQYSIECLVRNR 134
             +  L Q  +  +++N 
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138


>gi|73667036|ref|YP_303052.1| BadM/Rrf2 family transcriptional regulator [Ehrlichia canis str.
           Jake]
 gi|72394177|gb|AAZ68454.1| transcriptional regulator, BadM/Rrf2 family [Ehrlichia canis str.
           Jake]
          Length = 533

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y +  ++  A        ++ P ++S IA++  +SE +L +I+  L K G+V
Sbjct: 1   MLITTRLRYAVMFMVSLAQEYYILKGSNQPKKMSHIADSQSLSEGYLEQIIAKLKKQGLV 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113
            + +G  GG  L +  + IT+  ++++  E+  +  C  ++ I C P    C   ++   
Sbjct: 61  NSTKGPGGGYFLNKSPNIITLNLILESIGENIKITRCKNNNVIRCLPNNAKCITHNLWDN 120

Query: 114 ALNAFFDVLTQYSIECLVRNR 134
             N     L   S+E ++ N 
Sbjct: 121 IGNYIKKYLNSISLEDIINNN 141


>gi|312144048|ref|YP_003995494.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
 gi|311904699|gb|ADQ15140.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
           'sapolanicus']
          Length = 149

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R LMY A         + +IAE   ISE +L ++   L KA +V+ +RG
Sbjct: 1   MEISSQARYGLRALMYIAASEGSQAIPLREIAEKQNISERYLEQLFAKLKKADLVKGIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  ++IT  D++K  E      +       +  +        +     N  F
Sbjct: 61  AHGGYLLNQSPEEITAADILKVLEGPVISEQGPEKISSEAEIYKKAA-YELWNGLENLIF 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
             L   ++  L +  + IK
Sbjct: 120 KHLAAITLADLSKRAAEIK 138


>gi|260425936|ref|ZP_05779915.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
 gi|260420428|gb|EEX13679.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
          Length = 153

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  D     +  I++   +S  +L ++   L +AG+V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIAMQPDGDLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I ++D++ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLARPASEIRVVDILAAVDETVDAMHKGAGASGAASGSRAQSLTNRLWQSLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  ++ N
Sbjct: 121 YVFLHQTRLSDVIDN 135


>gi|269120156|ref|YP_003308333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sebaldella termitidis ATCC 33386]
 gi|268614034|gb|ACZ08402.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
           ATCC 33386]
          Length = 144

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+ ++M  A +        +  IA +  +SE +L +I+Q L K  ++ + R
Sbjct: 1   MRISTKGRYGLYLMMELAGNCTKSRCISLKNIAASQGVSEKYLEQIVQILNKEKLLISTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG +L     +I++  +++  E++  + EC  +      +   C    V  K     
Sbjct: 61  GAYGGYKLASKPSEISVGTILRCLEKTIDIPECEETADKSVFVSIVC--KEVYEKIDEVV 118

Query: 119 FDVLTQYSIECLVRNRSS 136
            ++L   ++E L+     
Sbjct: 119 NNLLNNITLEDLLNKYDE 136


>gi|308176299|ref|YP_003915705.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743762|emb|CBT74734.1| putative transcriptional regulator [Arthrobacter arilaitensis
           Re117]
          Length = 152

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +R +M  A          +I+E+  +    + K +  L   GI++  RGR
Sbjct: 1   MKLSAFTDVCLRTIMVLATPGTGQLTSREISESVGVPYNHVAKAVLELRTLGILQVTRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L   A + ++  +++  ++   + +C     + +CPL G+C L +V R+A  AF+
Sbjct: 61  NGGAMLTGAALESSLGGLLRKLDKRTDIVDCSDHDAQSNCPLAGNCRLRAVFRQAREAFY 120

Query: 120 DVLTQYSIECLV 131
             L    I+ + 
Sbjct: 121 ASLDALKIQDIC 132


>gi|108800879|ref|YP_641076.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870019|ref|YP_939971.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436505|ref|YP_001072196.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771298|gb|ABG10020.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
 gi|119696108|gb|ABL93181.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
 gi|126236305|gb|ABN99705.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
          Length = 162

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATADDGVLVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RPA  I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL Q S+  + 
Sbjct: 120 SVLEQTSLADVA 131


>gi|254774316|ref|ZP_05215832.1| hypothetical protein MaviaA2_06565 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 161

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP   I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL + ++  + 
Sbjct: 120 LVLEETTLADVA 131


>gi|254439600|ref|ZP_05053094.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
           307]
 gi|198255046|gb|EDY79360.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
           307]
          Length = 153

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  L   A+   ++P  I  +A+   IS  +L ++   L  AG+V +VRG
Sbjct: 1   MKLTTKGRYAMVALTDLALEATEHPVSIRALAKRQDISVTYLEQLFVKLRGAGLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L RP   I I+DV+KA +ES       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYSLARPPSDIRIVDVLKAVDESVSAMHTGAGVSGGASGSKAQSMTNRLWEGLSANV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVFLHQARLSDVVEN 135


>gi|153006770|ref|YP_001381095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030343|gb|ABS28111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 200

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 1   MHLTKRT---DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +      +Y +  L+  A+ ++ P  +  +A    + E FL K+   L KAG+VE  
Sbjct: 1   MKSSLYGAGAEYALHSLLILAVRSE-PVSVRDLARFQDLPERFLAKLFTRLQKAGLVEAT 59

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
            G RGG  L RPA +I + DV++A + +  + EC         F +      + G C + 
Sbjct: 60  EGVRGGFALARPAARIAVRDVLEAVDPNRTLFECAEIRRHCALFGAEPPAWSISGMCRIH 119

Query: 109 SVLRKALNAFFDVLTQYSIECL 130
             +++A  A    L   ++  L
Sbjct: 120 LFMKEAEGALQGFLASKTLADL 141


>gi|317123685|ref|YP_004097797.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Intrasporangium calvum DSM 43043]
 gi|315587773|gb|ADU47070.1| transcriptional regulator, BadM/Rrf2 family [Intrasporangium calvum
           DSM 43043]
          Length = 154

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M ++ R DY +R ++  A        P  I  +A    +   FL  I   L +A +V + 
Sbjct: 1   MDISARVDYAVRAMLILAEAAASGSGPVSIEALATEQELPRKFLEAIFADLRRAELVLSR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L RP  +I++ DV +A +           H+     V    L S+      +
Sbjct: 61  RGALGGYALARPQREISVGDVFRAVDGPLAEVRGLRPHETSYAGVAQ-HLPSLWVAVRAS 119

Query: 118 FFDVLTQYSIECLVRN--RSSIKKIFNA 143
             +VL   S+E L        ++++  A
Sbjct: 120 LREVLDGTSLEALRTGALPEPLQQLLTA 147


>gi|78189265|ref|YP_379603.1| hypothetical protein Cag_1300 [Chlorobium chlorochromatii CaD3]
 gi|78171464|gb|ABB28560.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           chlorochromatii CaD3]
          Length = 186

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A    +    + +++E    S+ FL K +Q L KAGI ++V+G 
Sbjct: 3   QVSRKFEYGLHAITYLATKGQNRVVTVKELSEELGFSQEFLSKAMQSLKKAGITKSVQGL 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL +P  +IT+ D+  ATE    + +C  S +  C +  +C   + +    +   +
Sbjct: 63  RGGFRLIKPITEITVADIAVATEGEPHLVQCNISAE-RCHVYATCQHKAFMNTLQHKIHE 121

Query: 121 VLTQYSIECLVRN 133
           +L   +I  L+  
Sbjct: 122 LLATTTIVALLEQ 134


>gi|184199973|ref|YP_001854180.1| Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183580203|dbj|BAG28674.1| putative Rrf2 family DNA-binding protein [Kocuria rhizophila
           DC2201]
          Length = 176

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RVL+    +         +IAE        + K +  L   G++ + RG
Sbjct: 1   MRLTAFSDIALRVLLLMGGLPQGTMLSTQRIAEGVGAPYHHVAKTVARLRGMGLLCSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGV L      +++  V++  E    + EC A     CPL   C L   L  A  AF+
Sbjct: 61  RAGGVALTAEGCGVSVGRVLRELEADTAIVECEADEAA-CPLNHGCRLRRALNSAREAFY 119

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++  LV  R 
Sbjct: 120 RELDGVTVTDLVNPRQ 135


>gi|297162887|gb|ADI12599.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
          Length = 161

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A    D   +   IA A  I   FL  IL  L + G+V + RG
Sbjct: 1   MQISARADYAVRAALELAAAGPDTSLKAEAIAAAQGIPHKFLEGILGDLRRGGLVTSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPAD+I I DV++  +            ++         L  +         
Sbjct: 61  GNGGYRLARPADEIAIADVIRVADGPLVSVRGVRPPQLSYTGPAE-SLLPLWVAVRANVR 119

Query: 120 DVLTQYSIECLV 131
            +L + ++  + 
Sbjct: 120 KILGEVTLADVA 131


>gi|197119432|ref|YP_002139859.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197088792|gb|ACH40063.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 162

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +Y +  L Y   +       I  +AE    ++ +L KI   L K GIV +V G
Sbjct: 1   MQFSVGVEYALHSLFYLVNVPEGKTVGIRHLAELHGSTDSYLSKIFAKLRKTGIVRSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------CPLVGSCGL 107
            +GG  L R  + I+  D+++A E   +  +C    K +            CP    C +
Sbjct: 61  VKGGYELARLPEAISFWDIIEAVEGPSYFFQCNEMRKKNIFVSDPSIFTDRCP----CLI 116

Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
             V++ A N F + L   S+  L
Sbjct: 117 KVVIQDAENVFRNELRNKSLRWL 139


>gi|91205764|ref|YP_538119.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii RML369-C]
 gi|91069308|gb|ABE05030.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii RML369-C]
          Length = 139

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A +  D P  +++I+    IS  +L +I   L KA +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
             GG  L    ++I I +++ A  E+F +  C+     +C      C    + +      
Sbjct: 61  PNGGYILIGKLEEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHI 120

Query: 119 FDVLTQYSIEC 129
            D     S++ 
Sbjct: 121 RDYFENISVKD 131


>gi|296116552|ref|ZP_06835162.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976764|gb|EFG83532.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 152

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY +  L+      +       ++ +  I E  + K+L+ L   GIV + RG R
Sbjct: 3   KLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTIAKVLKVLAAQGIVISQRGAR 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RP  QI++  V++A +    +  C    +  C     CGL         A  D 
Sbjct: 62  GGYRLARPLAQISVAAVIQAIDGPISLTTCVDGGE--CDARSKCGLVGQWDAVNGAILDA 119

Query: 122 LTQYSIECL 130
           L+  S+  +
Sbjct: 120 LSSISLSDM 128


>gi|256783279|ref|ZP_05521710.1| hypothetical protein SlivT_02175 [Streptomyces lividans TK24]
          Length = 146

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +TK TD  +R +M  A+    D P    ++AE   +      K +  L   G+VE  RGR
Sbjct: 1   MTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+ L     + ++  +V+  E    V +C       CPL G+C L   LR A  AF+ 
Sbjct: 61  GGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAFYA 118

Query: 121 VLTQYSIECLVRNRSS 136
            L   ++  LV   + 
Sbjct: 119 ALDPLTVTDLVAAPTG 134


>gi|257056284|ref|YP_003134116.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
 gi|256586156|gb|ACU97289.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
          Length = 149

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L K TD  +R++M  A+  +  +     ++A+A  +      K++  L + G+VE  R
Sbjct: 1   MRLMKGTDLALRIVMRLAVVGERESAPTTREVADAVSVPYSHAAKVVTRLQRLGVVEARR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ L       ++  +V+  E    V  C       CPL  +C L + LR A +AF
Sbjct: 61  GRSGGLALTAAGRAASLGRLVRELEGVGDVVGC--EDDPPCPLRTACRLRAALRSAQDAF 118

Query: 119 FDVLTQYSIECLVRNRSS 136
           +  L   +IE LV   + 
Sbjct: 119 YAALDPLTIEDLVAEPAG 136


>gi|254459475|ref|ZP_05072891.1| HTH-type transcriptional regulator NsrR [Rhodobacterales bacterium
           HTCC2083]
 gi|206676064|gb|EDZ40551.1| HTH-type transcriptional regulator NsrR [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 115

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 56/96 (58%)

Query: 42  FKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
            KI+  L +AG + T RGR GG RL +PA++I + DVV+ TE    + ECF      CPL
Sbjct: 1   MKIVHELGQAGYIVTQRGRGGGFRLAKPAEEIVVGDVVRLTEGPLNLVECFNLENNTCPL 60

Query: 102 VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           +G C L+  L++A  AF  VL   ++  +  NRS +
Sbjct: 61  IGICKLSRSLQEATRAFMAVLDDLTLADIASNRSVL 96


>gi|327402275|ref|YP_004343113.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
           DSM 16823]
 gi|327317783|gb|AEA42275.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
           DSM 16823]
          Length = 139

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y +  L Y A    + P  I +I+E   I   FL  IL  L K GI+ +  G+ 
Sbjct: 2   LSKKTKYALHALTYLAKKEANEPTLILEISENGHIPRKFLESILLDLKKQGILNSKMGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I I  +++       +  C +        +C    +CGL  V     N 
Sbjct: 62  GGYFLRQTPTEIQISTIIRLFNGPIALLPCVSLNYYQRCDECTDEKTCGLNKVFIDVRNE 121

Query: 118 FFDVLTQYSIECLVRNR 134
              +L   SI+ +V   
Sbjct: 122 TLRILENKSIQDIVDQE 138


>gi|256372224|ref|YP_003110048.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008808|gb|ACU54375.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 273

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R DY +R  +Y A   ++    + +I  A  I   F  +IL  L +AGI+    GR 
Sbjct: 5   LSRRGDYAVRAALYLARQESNEAVGVREITAAMAIPPSFAGQILADLTRAGILGARPGRG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L      IT+L +V+A E +     C       C     C L +  + A+ A  D 
Sbjct: 65  GGYWLQHDPKDITLLTIVEAAEGTLRAERCALGDGP-CRWDSVCPLHTFWQGAVRAVRDQ 123

Query: 122 LTQYSIECL 130
           L   ++  +
Sbjct: 124 LATVTLADV 132


>gi|126650609|ref|ZP_01722832.1| transcriptional regulator [Bacillus sp. B14905]
 gi|126592765|gb|EAZ86764.1| transcriptional regulator [Bacillus sp. B14905]
          Length = 140

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  +++           +  +A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 2   MKYSKATNYALHTMVFLTNTPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+ +   +++ LDV+ A E    +  C + H+      G C +  V+  A N   
Sbjct: 62  VNGGYRISKRPQEVSFLDVIYAIEGQTSLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120

Query: 120 DVLTQ 124
           + L++
Sbjct: 121 EELSK 125


>gi|302539851|ref|ZP_07292193.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302457469|gb|EFL20562.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
          Length = 152

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DY +R  +  A+  +D   +   IA +  +   FL  IL  L + G+V + RG
Sbjct: 1   MRISAKADYAVRAALELAVAADDTSLKAEVIAASQGVPHKFLEGILGDLRRGGLVVSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG RL RPAD+ITI DV++  +            ++      +  L  +         
Sbjct: 61  GKGGYRLARPADEITIADVIRVVDGPLVSVRGVRPPELSY-RGPAESLLPLWIAVRANVR 119

Query: 120 DVLTQYSIECLVR 132
            +L + ++  +  
Sbjct: 120 KILGEVTLAEVAA 132


>gi|89890072|ref|ZP_01201583.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
           BBFL7]
 gi|89518345|gb|EAS21001.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
           BBFL7]
          Length = 138

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T YGI+ L Y A + N+ P  IS IA+A  I   FL  IL  L K  I+ + +G+ 
Sbjct: 4   LSRKTKYGIKALTYLARLDNNEPVSISTIADAEQIPHKFLEAILLELRKNSILGSRKGKG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  + +  E    +  C    F     DC    +C +  ++ +  + 
Sbjct: 64  GGYYLMQSPETVRMSSIHRVLEGPIAMLPCVSLNFYEKCEDCIDEETCAVNKLMIQVRDN 123

Query: 118 FFDVLTQYSIECLVR 132
              +L   +++ L++
Sbjct: 124 TLAILENQTLKDLIK 138


>gi|323694029|ref|ZP_08108212.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
           WAL-14673]
 gi|323501915|gb|EGB17794.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
           WAL-14673]
          Length = 165

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R ++Y A   +  +  ++I EA  ++++F+ K+L+ L  AG+V +  G 
Sbjct: 10  MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 68

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL + A +I +LD++   E++  +  C     + C    +C +     +       
Sbjct: 69  TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 127

Query: 121 VLTQYSIECLVR 132
              + +++ ++ 
Sbjct: 128 FFGRDTLQDVID 139


>gi|254821269|ref|ZP_05226270.1| hypothetical protein MintA_15127 [Mycobacterium intracellulare ATCC
           13950]
          Length = 161

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMIQLATVSDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L R    I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  REGGYELARSGSDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL Q ++  + 
Sbjct: 120 SVLEQTTLADVA 131


>gi|153209325|ref|ZP_01947344.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218766|ref|YP_002305553.1| cysteine desulfurase activator complex subunit SufB [Coxiella
           burnetii CbuK_Q154]
 gi|120575396|gb|EAX32020.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013028|gb|ACJ20408.1| ABC transporter-associated protein [Coxiella burnetii CbuK_Q154]
          Length = 631

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG  
Sbjct: 3   KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R    I+I D++ A +    + EC +     C     CG+    +      FDV
Sbjct: 63  GGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   ++  +   +  +K+I
Sbjct: 122 LDSLNLADM--QKPLLKRI 138


>gi|291551330|emb|CBL27592.1| rrf2 family protein (putative transcriptional regulator)
           [Ruminococcus torques L2-14]
          Length = 572

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T  TDY IR++ Y A  +      S++++   +   ++ KI + L +AGI++   G 
Sbjct: 1   MQITSTTDYAIRIVCYLAAQS-QMISTSELSQELSVPSSYIPKITKKLKQAGIIKACEGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
           +GG ++ +  + I++ DV+  TE +  ++ C    +  C       C +  +L    N +
Sbjct: 60  KGGYQIAKQPENISLRDVISCTESTMAISRCL-EKEGGCSKNYIACCKVHQILMDLQNIY 118

Query: 119 FDVLTQYSIECLVR 132
            + L    I  ++R
Sbjct: 119 NNRLESVKISDIIR 132


>gi|157363012|ref|YP_001469779.1| BadM/Rrf2 family transcriptional regulator [Thermotoga lettingae
           TMO]
 gi|157313616|gb|ABV32715.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga lettingae
           TMO]
          Length = 134

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +++Y  ++L+  A    + P  +S I     + + F  KI+  L +AGI+E+ RG
Sbjct: 1   MGITIKSEYAFKILLQIANCQANEPVSLSLILTDVNVPKEFAEKIMVSLKEAGIIESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118
           R+GG RL + ADQIT L++V+A ++   + +C       C    SC +   +      + 
Sbjct: 61  RKGGYRLTKSADQITALEIVRAVDDPDKLIKCTMDENC-CSDPTSCTIRLKIWDNLKKSV 119

Query: 119 FDVLTQYSIECL 130
            D L+   +  L
Sbjct: 120 EDTLSSIKLSDL 131


>gi|194333947|ref|YP_002015807.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           aestuarii DSM 271]
 gi|194311765|gb|ACF46160.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
           aestuarii DSM 271]
          Length = 169

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L T+ TDY +R L+  A H D       IAE   I   FL  +LQ + + G++ +  G
Sbjct: 2   MQLLTQHTDYALRALLMLADHPDSYLSARHIAEKQEIPYQFLRGLLQEMPREGLICSHEG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGV L R    I++ +V++  +    ++EC    ++ C     C L   + +  +   
Sbjct: 62  AHGGVGLNRDPGSISVRNVIELFQGKVELSECMFRKQL-CSNRSRCVLRHQIMRIESVVA 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
               + +I  L+ +  ++ ++
Sbjct: 121 REFDRITIGSLLNDLHAVDRM 141


>gi|86157269|ref|YP_464054.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773780|gb|ABC80617.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 157

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 2/140 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY I +L   A   +       +A+   +    + K+ + L KAG+V + RGR 
Sbjct: 3   RLSKLTDYAIVILANLARAGEGTLTAQDLADRSKVPLPTVSKLCKELSKAGLVLSHRGRH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
           GG  L R AD I+I ++V+A E    +  C         C L  +C   +       A  
Sbjct: 63  GGYGLARSADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L    +  +V   S+  K
Sbjct: 123 GALRGLPLSSIVLQHSNDPK 142


>gi|227818808|ref|YP_002822779.1| transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36959063|gb|AAQ87488.1| RRF2 family protein [Sinorhizobium fredii NGR234]
 gi|227337807|gb|ACP22026.1| predicted transcriptional regulator [Sinorhizobium fredii NGR234]
          Length = 179

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 2   HLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           H++   +Y +  L+Y   A     P     +AE   +   F+ K+   L K+GIV    G
Sbjct: 3   HVSAGVEYALHCLLYLIDAEELGQPASARDLAELQKVPAEFVAKLFTKLQKSGIVVAREG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
             GG  L RPA  IT LDV++A +    + EC         F        + G C + +V
Sbjct: 63  IGGGFALARPATDITALDVIEAVDGRKALFECKEIRAQCALFGDRTPVWAMDGVCSIHAV 122

Query: 111 LRKALNAFFDVLTQYSIECLV 131
           + +A     +VL  +++  + 
Sbjct: 123 MIEAEKRTREVLAGHTLASIA 143


>gi|116748731|ref|YP_845418.1| BadM/Rrf2 family transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697795|gb|ABK16983.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobacter
           fumaroxidans MPOB]
          Length = 133

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R++Y +  L+Y A H       +  IA A  I   FL +IL  L  A  + + +G
Sbjct: 1   MRLTCRSEYALLALVYLARHQGETFIPVPAIAAAQGIPPKFLEQILLSLRLAKYLHSSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
           + GG RL +PAD IT+ ++++  + +    E  + +     P+     L ++ ++  +  
Sbjct: 61  KNGGFRLAKPADTITLAEIIRLFDGALAPTESASKYFYEPTPIEKEGKLLALFKEVRDYL 120

Query: 119 FDVLTQYSIECLV 131
            D + + +I  + 
Sbjct: 121 SDKMERTTIADVA 133


>gi|226361387|ref|YP_002779165.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239872|dbj|BAH50220.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 157

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+RV+M  A+  D        IAE   +S     K++  L + GIV+  RG
Sbjct: 1   MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYTHAAKVITRLGELGIVDARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ +       ++  + +  E    V +C       CPL  +C L S LR+A +AFF
Sbjct: 61  RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSNCLLRSALRRAQDAFF 118

Query: 120 DVLTQYSIECLVRNRSS 136
             L   ++E L R  + 
Sbjct: 119 TSLDALTVEDLTRTPTG 135


>gi|319649301|ref|ZP_08003459.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398935|gb|EFV79615.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 138

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +K T+Y +  ++Y  +        + Q+A+   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSKATNYALHTMVYLTLTPKGKSVGVEQLAKIQNLSPTYLSKILTKLVKAGLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  +   + + + LDV+ A E    +  C   H         C +  V+ +A     
Sbjct: 61  VKGGYSIVSHSRKTSFLDVIHAIEGHTTLFHCSLEHDD--LQNEDCLIEKVMFEAEKKMK 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L    I  + +   S KK
Sbjct: 119 DELNTKYISDIAKEIDSTKK 138


>gi|260770286|ref|ZP_05879219.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
           family [Vibrio furnissii CIP 102972]
 gi|260615624|gb|EEX40810.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
           family [Vibrio furnissii CIP 102972]
          Length = 172

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  L+     +  P    + + A    +   +L KI     KAG+VE+  GR+
Sbjct: 5   SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L +   +I++LD+  A +    + +C         F          G CG+ +V+R
Sbjct: 65  GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVPQWACEGMCGIHAVMR 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           KA N    VL + SI  L + 
Sbjct: 125 KAQNQMQQVLAEQSILMLSKQ 145


>gi|315498886|ref|YP_004087690.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315416898|gb|ADU13539.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 138

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R  Y IR +   A I      +  ++AE       FL  IL  L + G + + RGR 
Sbjct: 2   LSQRAKYAIRAMQEMARIPQGQTVQAGELAERIKAPLHFLEGILLELRREGFLMSKRGRS 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP+D I++ D+++  +    +  C +        DCP    C L  VL  A +A
Sbjct: 62  GGYMLARPSDMISMADLIRLIDGPLALTPCASRTAYARCEDCPTPDDCQLRLVLLAARDA 121

Query: 118 FFDVLTQYSIEC 129
              VL   ++  
Sbjct: 122 MARVLESSTLAE 133


>gi|225849877|ref|YP_002730111.1| Rrf2 family protein [Persephonella marina EX-H1]
 gi|225646286|gb|ACO04472.1| Rrf2 family protein [Persephonella marina EX-H1]
          Length = 142

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            IR ++Y A + D  +   I +IAE   +S  FL K LQ LVK G++E+ RG  GGVRL 
Sbjct: 9   SIRAMIYIAKYGDRNSFLSIHKIAEDLDLSFYFLSKNLQKLVKVGLLESYRGPNGGVRLA 68

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           +P DQI +LD++ A + + F  +C       C     C +     +  N  +++    ++
Sbjct: 69  KPPDQIKLLDIIDAIDGTEFFNKCILGFDT-CSDENPCVIHHKWAEKRNEIYEMFFGTTL 127

Query: 128 ECLVRN 133
              V +
Sbjct: 128 SEAVED 133


>gi|222100083|ref|YP_002534651.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
 gi|221572474|gb|ACM23286.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
           DSM 4359]
          Length = 143

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           K   Y +R+LM  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 10  KHVRYALRLLMRLSLEN-RPMSSSELAEKEHITRSFTLKVLHYLKRSGLVSSIKGKNGGF 68

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            L R AD+I+ LD+++A E+   + +C       C     C          +   ++ + 
Sbjct: 69  VLARSADEISFLDIIRAFEKDLVIVDC----SNRCENYKHCRAKYFWSWLSDHLKEMFSS 124

Query: 125 YSIECLV 131
            +++ + 
Sbjct: 125 ITLKDIA 131


>gi|298241400|ref|ZP_06965207.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554454|gb|EFH88318.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 137

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ T+Y +  ++Y  A+       + Q+AE   +S  +L KIL  LVKAG++E+  G
Sbjct: 1   MKYSQATNYALHTMLYLVALPLGKTVGVQQLAELQGLSPTYLSKILTKLVKAGMIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R    ++ L+V+ A E +  +  C             C +  V+  A     
Sbjct: 61  INGGYKLTRNKADLSFLEVIHAIEGTASLFHCDDGKDHQ-----GCLIQGVMTHAEQQME 115

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L +  +  LV     +  +
Sbjct: 116 AYLKERKLVELVGQVGDVNAL 136


>gi|117929268|ref|YP_873819.1| BadM/Rrf2 family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649731|gb|ABK53833.1| transcriptional regulator, BadM/Rrf2 family [Acidothermus
           cellulolyticus 11B]
          Length = 156

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           MH++ +TDY +R ++  A       D   +  +IA+   +   FL  IL  L +A +VE+
Sbjct: 1   MHISAKTDYAMRAMLVLAHAARERADAWVKAEEIADEQRLPRKFLEAILADLRRARLVES 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           +RG  GG RL +PA  I + DV++A +             +      + GL  V      
Sbjct: 61  LRGAEGGYRLAKPASAIYVADVMRAVDGPLAEVRGLRPENVRYEGAAA-GLQDVWVAVRA 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
               VL + S+E  V NR+  K + +
Sbjct: 120 GLRAVLERVSVED-VANRALPKPVQD 144


>gi|150017088|ref|YP_001309342.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903553|gb|ABR34386.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 137

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y +  ++Y   +       +S +AE   +S  +L KIL  LVKA ++E+  G
Sbjct: 1   MKYTKATNYALHTIVYMMENAKSEKLSVSALAEHFNLSTTYLSKILTQLVKADLIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +    I+ +DV+KATE +  +  C  +          C +  V+ +A N   
Sbjct: 61  ANGGYVLRKDMRSISFMDVIKATEGTGSLFVCNLNEN------SKCLIEKVMSEAENVLE 114

Query: 120 DVLTQYSIECLVRNRSSIK 138
           + L    +  L +N+S+ K
Sbjct: 115 NYLEDKKLYDLTQNKSNCK 133


>gi|146278399|ref|YP_001168558.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556640|gb|ABP71253.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 155

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     +    ++++++   IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L R A +I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARDAQEIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 -FFDVLTQYSIECLVRNR 134
             +  L Q  +  +++N 
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138


>gi|149193764|ref|ZP_01870862.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135717|gb|EDM24195.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
           mediatlanticus TB-2]
          Length = 134

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T Y ++ L+  + + D P  ++ I+E   I + FL K+LQ L + G V + +G 
Sbjct: 1   MLFTKSTAYALQALIELSKY-DKPIDVTTISEKTAIPKPFLAKLLQNLSRNGFVYSFKGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
            GG  L +   +I +LD+ K  E+   +    +  K DC       C L     K  +  
Sbjct: 60  NGGFVLAKNPKEIKLLDIFKNIEDKDTLVFYCSKSKDDCTRNRGSICELQPFFEKMEDEI 119

Query: 119 FDVLTQYSIECLVRN 133
             +L +Y++   +RN
Sbjct: 120 AIILDKYTLADFIRN 134


>gi|194335942|ref|YP_002017736.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308419|gb|ACF43119.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 137

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A         + ++A+    S+ FL K +Q L +AGI  +V+G 
Sbjct: 3   QVSRKFEYGLHAVTYLATKGVGRVVTVKEMADEIGFSQEFLSKAMQSLKRAGIATSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L +  D+IT+ D+  A E    +  C       C +  SC     L        +
Sbjct: 63  KGGYTLGKTMDEITVADIAIAIEGKPHLVRC-GVTPDSCEIFSSCHHRGYLNNLQYKIQE 121

Query: 121 VLTQYSIECLVRN 133
           +LT  ++  L+  
Sbjct: 122 LLTATTLHSLLDE 134


>gi|56696894|ref|YP_167256.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Ruegeria pomeroyi DSS-3]
 gi|56678631|gb|AAV95297.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Ruegeria pomeroyi DSS-3]
          Length = 152

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +  I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALTDIALQPADKLVTLGDISERQDISLPYLEQLFVKLRRADLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I +++++ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLARPASDIRVVEILAAVDETVNAMHKGAGASGASSGSRAQSLTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V+N
Sbjct: 121 YVFLHQTRLSDVVKN 135


>gi|116622770|ref|YP_824926.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225932|gb|ABJ84641.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 147

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  DY +RV+++ A +        S+++ +    E FL K+LQ L + G++ + RG
Sbjct: 1   MQLTRAADYAVRVMIHLAGLPPGTRVSRSELSTSAECPEQFLCKVLQSLTRVGLIASHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L       ++L+VV+A E    +  C  +H   C     C    V  +A  A  
Sbjct: 61  NTGGFELEERHRSASVLEVVQAIEGPIHLNVCL-NHDHGCSRQSWCPAHDVWAEAQRALN 119

Query: 120 DVLTQYSIECLVR 132
           +VL   +I  +  
Sbjct: 120 EVLGHATISGMAH 132


>gi|262197356|ref|YP_003268565.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Haliangium ochraceum DSM 14365]
 gi|262080703|gb|ACY16672.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
          DSM 14365]
          Length = 183

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYP---NRISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L+ +T YG+R +   A H  D P    +   IA    I   +L +I Q L +AG+VE+
Sbjct: 1  MRLSTKTRYGVRAIFDIAYHGQDQPGVAAQAKDIARREDIPLRYLEQIFQDLKRAGLVES 60

Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFF 87
           RG RGG  L R A++IT+ DVV+A +    
Sbjct: 61 KRGPRGGYSLKRSAEEITLGDVVRALQGPIE 91


>gi|330466620|ref|YP_004404363.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809591|gb|AEB43763.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 151

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R  +  A           I+    +   FL  +L  L +AG+V   RG 
Sbjct: 1   MQISARGDYAVRAALSLAAAYPALLSTQTISAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP  ++T+  V++A E            +     V    L         +   
Sbjct: 61  EGGYALARPPREVTVGAVLRAVEGPLAGVRGLRPEETSYEGVAQ-HLPGFWVAVRASLRR 119

Query: 121 VLTQYSIECLVRNR 134
           V+ + S+  ++  R
Sbjct: 120 VVDEVSLADVLSGR 133


>gi|145220261|ref|YP_001130970.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206425|gb|ABP37468.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeovibrioides DSM 265]
          Length = 148

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  L K++DY +R L+      D       IAE   +   FL  +LQ L++ G+VE+  G
Sbjct: 1   MKVLNKKSDYAVRALLALGAAGDGFLSARVIAEGQQMPYQFLRGLLQDLIRHGMVESREG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG RL + AD+I +LD+++  +    V+EC    +I C    +C L   + +  +   
Sbjct: 61  ARGGFRLVKDADEIALLDIIEIFQGPVQVSECMFRKQI-CVNRSNCVLRHEILRIEHVVQ 119

Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144
                 +I  L+R+   + + + + G
Sbjct: 120 REFAGITIGKLMRDLEEAHRPVLDGG 145


>gi|251771117|gb|EES51701.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           ferrodiazotrophum]
          Length = 141

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R DYGIR ++  A+   +    ++IAE   I + FL +I+  LVK G VE+ RG +
Sbjct: 4   KLSQRVDYGIRAMVEIAVAGAHGMTGAKIAERSKIPKPFLKQIMATLVKNGFVESSRGPQ 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G  RL R    I +  +V+A E +  + +  +             L ++  K   A  + 
Sbjct: 64  GKYRLLRDPADIRLSGIVRALEGTVSLYDPSSPPGP--------ALQTLFDKLSQAVNEE 115

Query: 122 LTQYSIECLVR 132
           L + ++   + 
Sbjct: 116 LEKVTLAECIE 126


>gi|254518634|ref|ZP_05130690.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912383|gb|EEH97584.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 143

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+  AI+ D     I  I+E   ISE +L +I   L K GI+   +G
Sbjct: 1   MKISTKGRYGLRALIDLAINIDSENVSIKTISERQNISERYLEQIFSLLRKGGIIVGRKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +   ++TI +++K  E      +     + +     +    ++ +       
Sbjct: 61  AQGGYILGKNPSELTISEILKVLEGENIFIDINEEEENELENFIN---KNLWKDINCLIS 117

Query: 120 DVLTQYSIECLVRNRSSIKK 139
              +  ++E LV      K 
Sbjct: 118 KYFSAITLEDLVNEYKKSKD 137


>gi|114705805|ref|ZP_01438708.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
 gi|114538651|gb|EAU41772.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
          Length = 138

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++R  Y IR +   A  +  P   + IAE   I + FL  IL  L +AG + + RG+ G
Sbjct: 2   ISQRARYAIRAVFNVADRS-TPVSAAVIAEEEAIPKKFLEAILADLKQAGFLASSRGKNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G  L  P  +I+  D+++  +    +A C +        DC  V +C     L +  +A 
Sbjct: 61  GYLLALPPAEISFADILRVIDGPLALAPCASRTAYRRCADCKDVETCETRKALLRVRDAT 120

Query: 119 FDVLTQ 124
            ++L  
Sbjct: 121 AEILEN 126


>gi|297566671|ref|YP_003685643.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
           DSM 9946]
 gi|296851120|gb|ADH64135.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
           DSM 9946]
          Length = 174

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L Y             +++ A  +   +L +IL  LV  G+V + +G
Sbjct: 1   MRLSATDIYAFKALGYLGTQPPGRYVGSEELSRATGVRRTYLVRILAALVGQGLVASKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLT-SVLRKALNA 117
             GG  L RP  +I + DV++A +       C +      C   G C     +  K  +A
Sbjct: 61  AGGGYALPRPPQEINLRDVIRAVDGPIAPLSCVSLKWPKACGEEGRCHARNQIWIKVRDA 120

Query: 118 FFDVLTQYSIECLVRN 133
             + L++ S+  L  +
Sbjct: 121 VLEALSRVSVADLAED 136


>gi|254509696|ref|ZP_05121763.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533407|gb|EEE36395.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
          Length = 152

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+ + D    + +I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQSSDALVTLGEISERQDISLPYLEQLFVKLRRADLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R   +I +++++ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLARAPSEIRVVEILAAVDETVDAMHKGAGATGASSGSRAQSLTNRLWESLSANV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  ++RN
Sbjct: 121 YVFLHQTRLSDVIRN 135


>gi|257065317|ref|YP_003144989.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
 gi|256792970|gb|ACV23640.1| rrf2 family protein, putative transcriptional regulator [Slackia
           heliotrinireducens DSM 20476]
          Length = 136

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +R L+  A H D     +  +AE   +S+ +L +I+  L  +GI++  RG
Sbjct: 1   MLVSTKGRYALRFLLDLAQHKDAGVISLQAVAERQNVSKKYLERIVSLLSPSGILKITRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L R  + IT+ +++  TE  F           +CP                A  
Sbjct: 61  YQGGYQLARDPELITVAEILMLTEGGFSPVPI--DEARECPASA-----FAWESLEGAIT 113

Query: 120 DVLTQYSIECLVRNRSSI 137
             L   +++ ++ +   +
Sbjct: 114 RCLENITLQDILDHSDPV 131


>gi|326329630|ref|ZP_08195952.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
 gi|325952626|gb|EGD44644.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
          Length = 152

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ ++DY +R L+  A   D       ++  A  I   FL  IL  L KAG+V + RG
Sbjct: 1   MRVSAKSDYALRALIEMAAREDGKAVSAEELGRAQEIPHGFLQAILADLRKAGVVISQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL R A  +++ DV++A +             +         L  V   A ++  
Sbjct: 61  QSGGWRLARKASDVSVADVIRAVDGPLVSVYGLRPEAVTYNERAD-VLQHVWIAARDSLR 119

Query: 120 DVLTQYSIECLVRNR 134
           +V  + SI  L    
Sbjct: 120 EVFEKVSIAELAARE 134


>gi|134099519|ref|YP_001105180.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008706|ref|ZP_06566679.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912142|emb|CAM02255.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 160

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  ++ +  L+  A + +  P   S++A    +   +L K LQ LV+AG++ +  G
Sbjct: 1   MRMSEGVEWALHSLLALAWLDDGRPVPTSRLAAGNDLPPAYLNKQLQALVRAGLLVSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112
            RGG  L RP ++IT++DVV A E       C         ++         C + + +R
Sbjct: 61  ARGGFSLARPPEKITLMDVVAAIEGPEEAFRCTEIRRRGAGANAPRREFESPCAIATAMR 120

Query: 113 KALNAFFDVLTQYSIECL 130
           +A  A+   L   ++  +
Sbjct: 121 RAELAWRRELAAQTLADV 138


>gi|319948207|ref|ZP_08022366.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
 gi|319438142|gb|EFV93103.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
          Length = 160

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 10/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
           M +T ++DY +R L+  A            D P    ++     I   FL  IL  L +A
Sbjct: 1   MRVTAKSDYALRALVELAAARSDDPARAPRDNPVSAEELGRLQDIPHGFLQAILSDLRRA 60

Query: 52  GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G+V + RG+ GG  L R AD+IT+ DV++A +             +      +  L  V 
Sbjct: 61  GLVASRRGKTGGWFLGRDADEITVADVMRAVDGPLVSVYDVRPEAVVYNERAA-VLQHVW 119

Query: 112 RKALNAFFDVLTQYSIECLVRNR 134
             +  A   V+   +I  L   R
Sbjct: 120 IASRAALRRVMDAVTIADLAAGR 142


>gi|167586740|ref|ZP_02379128.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           ubonensis Bu]
          Length = 127

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 17  CAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
            A+  +  P  ++ I++   IS  +L ++   L +  IVE+VRG  GG  L R A  +T+
Sbjct: 1   MALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTV 60

Query: 76  LDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            D++ A +E     +C      D      G C    +         + L   S++ LV  
Sbjct: 61  ADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWATLNQKMVEYLDSVSLQDLVDQ 120

Query: 134 RS 135
           + 
Sbjct: 121 QR 122


>gi|320334527|ref|YP_004171238.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755816|gb|ADV67573.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 155

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L Y  +   D      +I+E   ++  +L +IL  L   G+V++ +G
Sbjct: 1   MRLSTTDVYAFQALAYLGMQGPDRWIASEEISEQTGVARPYLVRILAALAAKGVVKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117
             GG  L R    +++ +VV+A +       C + + +  CP    C   + +  +  +A
Sbjct: 61  IGGGYALARKPHLVSLCEVVRAIDGPVAPLSCISLNWREPCPEQDRCHARNTIYTRMRDA 120

Query: 118 FFDVLTQYSIECLVRNRSS 136
              VL  +S+  LV++R++
Sbjct: 121 MLTVLQDFSVADLVQDRTA 139


>gi|307297855|ref|ZP_07577661.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306917115|gb|EFN47497.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 154

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  T ++ Y +R L   A           + +I +   I   FL KI   L +AGI++ V
Sbjct: 1   MGFTLKSSYALRALYKMAKSTREGKDKLSLVEIVQGNEIPRDFLEKIFGELRQAGIIKAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGR GG  L RPA++I + DV+   ++      C   +   C    +C +  V  K  NA
Sbjct: 61  RGRYGGYCLARPANEILLRDVILKLDKPMNSYPCLQQNG-KCLEDPNCTVKYVWFKLYNA 119

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L   ++E L+     I +
Sbjct: 120 MMRELGSMTLENLLEYGDKIAQ 141


>gi|15892655|ref|NP_360369.1| hypothetical protein RC0732 [Rickettsia conorii str. Malish 7]
 gi|15619826|gb|AAL03270.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 139

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L KA +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMASKSSTEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    ++I I D++ A  E+F +  C+      C P    C    + +      
Sbjct: 61  SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D     SI+  + +  +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139


>gi|145222864|ref|YP_001133542.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315443329|ref|YP_004076208.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Mycobacterium sp. Spyr1]
 gi|145215350|gb|ABP44754.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
           PYR-GCK]
 gi|315261632|gb|ADT98373.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
           Spyr1]
          Length = 158

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATVGDGALVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RPA  I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTASLTDVWRALRASMR 119

Query: 120 DVLTQYSIECLVRNR 134
            VL Q S+  +    
Sbjct: 120 SVLEQTSLADVASGE 134


>gi|323485134|ref|ZP_08090486.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
           WAL-14163]
 gi|323401564|gb|EGA93910.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
           WAL-14163]
          Length = 146

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY +R ++Y A   +  +  ++I EA  ++++F+ K+L+ L  AG+V +  G 
Sbjct: 1   MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL + A +I +LD++   E++  +  C     + C    +C +     +       
Sbjct: 60  TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 118

Query: 121 VLTQYSIECLVR 132
              + +++ ++ 
Sbjct: 119 FFGRDTLQDVID 130


>gi|296282946|ref|ZP_06860944.1| transcriptional regulator [Citromicrobium bathyomarinum JL354]
          Length = 140

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY I ++   A          + +A+   I      KI+  L  AG++ + RG
Sbjct: 1   MRLSNLADYAIVIMAATARKCGGGRVSSADLAQETGIPVPTAQKIVSKLSAAGLLRSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG++L RPA  I++ D+V+A E    +  C  +   DC +   C +         A  
Sbjct: 61  AGGGLQLGRPAAAISMADIVEAIEGPIALVSCIDTG--DCAVEHECSVKPHWPVVNAAVR 118

Query: 120 DVLTQYSIECLV 131
             L + S+  + 
Sbjct: 119 GALAEVSLAKIA 130


>gi|239982229|ref|ZP_04704753.1| putative transcriptional regulator [Streptomyces albus J1074]
 gi|291454076|ref|ZP_06593466.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357025|gb|EFE83927.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 153

 Score =  123 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M LT+ TD  +RVLM  A+ +    D      ++A    +      K +  L   G+VE 
Sbjct: 1   MRLTRFTDLALRVLMRLAVEDPKATDDLPTTREVAAGMRVPYTHTAKAVARLQHLGLVEA 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RGR GG+ L       ++  +V+  E +  V EC       CPL  +C L   LR+A  
Sbjct: 61  RRGRGGGLTLTAAGRSASVGALVRELEGTGDVVEC--EGAEPCPLRSACRLRGALRQAQE 118

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           AFF  L   ++  L  + + 
Sbjct: 119 AFFAALDPLTVGGLAASPTG 138


>gi|238060186|ref|ZP_04604895.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237881997|gb|EEP70825.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 170

 Score =  123 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R     A            P    QIA+A  I   FL  IL  L + GI
Sbjct: 15  MRLSARVDYALRATAELAAVADDAGAARSRPVTAEQIAKAQGIPPKFLESILLQLRRGGI 74

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V   RG  GG  L RPA +I++ +V++  +            ++         L  V   
Sbjct: 75  VHAQRGPEGGYWLARPAAEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAQ-ALQDVWIA 133

Query: 114 ALNAFFDVLTQYSIECLV 131
              +  ++L   ++  + 
Sbjct: 134 LRASEREILDLVTVADVA 151


>gi|322382961|ref|ZP_08056793.1| transcriptional regulator-like protein of cysteine biosynthesis
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153081|gb|EFX45539.1| transcriptional regulator-like protein of cysteine biosynthesis
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 126

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +M  A    + P  +  IAE   +SE +L +++ PL  AG+V+++RG  GG  L RPA+Q
Sbjct: 1   MMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQ 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           IT   +++  E      + F                 +  +  ++   VL   ++  L+
Sbjct: 61  ITTGQIIRVLEGPISPVD-FEEEDDPAK-------RDLWIRIRDSIAQVLDSTTLASLI 111


>gi|302035787|ref|YP_003796109.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603851|emb|CBK40183.1| putative HTH-type transcriptional regulator, rrf2 family
           [Candidatus Nitrospira defluvii]
          Length = 150

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YGI   +  A+H  + P     IA+   I   FL ++L  + KAG+V + RG
Sbjct: 1   MKVSLRATYGIIAAVDLALHHAEQPVCAKSIAKRQAIPARFLEQVLHAMKKAGVVASQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117
            +GG  L R   ++++ D++ A E            K            L  +  +   A
Sbjct: 61  AQGGYVLSRKPSELSVADILDALEGPLLTTNGEGGPKHSSSRGAKQEALLAHIWDRVKRA 120

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              VL++ ++E L + + S+ +
Sbjct: 121 ELSVLSEVTVEELAKRQRSLDE 142


>gi|296170194|ref|ZP_06851788.1| Rrf2 family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895146|gb|EFG74863.1| Rrf2 family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 159

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ + +Y +R ++  A + +    +   +A+A  I   FL  IL  L    +V + RGR 
Sbjct: 1   MSAKAEYAVRAMVQLATVPHGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP D+I+I DV++  +             +      +  LT V R    +   V
Sbjct: 61  GGYELARPGDEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRSV 119

Query: 122 LTQYSIECLVRN 133
           L + ++  +  N
Sbjct: 120 LEETTLADVAAN 131


>gi|116626733|ref|YP_828889.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229895|gb|ABJ88604.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 158

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +YG+R L+      +  +  I ++++A  +S  +  K+L+ L K G V+  RG
Sbjct: 1   MKLSANEEYGLRCLVRIGYAGEGGSLTIPEMSQAEGVSPAYAAKVLRVLRKGGFVKAARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESF---FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           + GG  L RPA+ I I DV+             E  A     C     C + S+ R    
Sbjct: 61  KDGGYTLARPAEAIVIGDVMDVLGGRIFESSFCESHAGQAAICTRSIDCSVRSLWRAVQV 120

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
           A   VL++ ++  L++N   + 
Sbjct: 121 AVDQVLSKATLRDLLQNEEEMN 142


>gi|182414244|ref|YP_001819310.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841458|gb|ACB75710.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
           PB90-1]
          Length = 137

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ + DY  RVL   A    +    +I  +A    +   FL +IL  L   G++ + R
Sbjct: 1   MKISTKVDYACRVLAELARLHGSGELAQIEHLARVEKLPPNFLAQILSELRNGGLITSRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L RP DQI++ D++   +    V E   +H+          +  V  +   +F
Sbjct: 61  GIQGGYALARPPDQISLYDIITLIDG--AVLELSGNHEG----RSGRRIRQVWLEIRESF 114

Query: 119 FDVLTQYSIECLV 131
            +   +Y+++ LV
Sbjct: 115 EEKTKRYTLDQLV 127


>gi|304440166|ref|ZP_07400057.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371429|gb|EFM25044.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 141

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY  R+  Y A         ++I+E   I E F  +IL+ L  AGI +  RG 
Sbjct: 1   MRITQEVDYAFRICSYLASKKGEVVAATEISETQAIPERFTLRILRKLNLAGITDAKRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRKA 114
            GG  L R    + + ++++A +    +  C  S    C    +      C     L   
Sbjct: 61  YGGYYLVRDKYDLNLYEIIEAIDGPIQINRCLRSEDAYCSKNNTQKEREMCKFHQKLSYI 120

Query: 115 LNAFFDVLTQYSIECLVR 132
            N+  ++  Q ++    +
Sbjct: 121 QNSIINMFKQTTLAEFAK 138


>gi|310780203|ref|YP_003968535.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
 gi|309749526|gb|ADO84187.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
           DSM 2926]
          Length = 140

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T +  YG+  L+Y A + +    + ++AE   IS+ +L +I   L K+GI+ +V+G +GG
Sbjct: 4   TNKGHYGLIALIYMAGNIEKKVSVKEVAEKENISKRYLEQIFSALKKSGILISVKGSQGG 63

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
             L R   +I + DV++A E+                         V      +   ++ 
Sbjct: 64  YLLSRSPKEIKVGDVLRALEDIESAV----PKNYRIEDTSYTIQKEVWDTIEKSINQIID 119

Query: 124 QYSIECL 130
             SIE L
Sbjct: 120 NTSIEDL 126


>gi|157828607|ref|YP_001494849.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933321|ref|YP_001650110.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|229586808|ref|YP_002845309.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           africae ESF-5]
 gi|238650793|ref|YP_002916648.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
 gi|157801088|gb|ABV76341.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908408|gb|ABY72704.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
 gi|228021858|gb|ACP53566.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           africae ESF-5]
 gi|238624891|gb|ACR47597.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
          Length = 139

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L KA +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    ++I I D++ A  E+F +  C+      C P    C    + +      
Sbjct: 61  SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D     SI+  + +  +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139


>gi|297562143|ref|YP_003681117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846591|gb|ADH68611.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 143

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  TD  +R++M  A+ ++        +A    +    + K +  L   G+VE  RG
Sbjct: 1   MRLTAFTDVSLRLVMRLAVADEGELLTTRAVAGMLSVPYTHMAKAVARLSDMGLVEARRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L     + ++  +V+  E +  +A C       CPL  +C L   LR+A  AF+
Sbjct: 61  RNGGLLLTESGRRASVGSIVRELEGAGELAGC--EDDPPCPLRAACRLRGALREAHEAFY 118

Query: 120 DVLTQYSIECLVRNRS 135
             L   ++E LV   +
Sbjct: 119 TSLDGVTVESLVSPPA 134


>gi|315181355|gb|ADT88268.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC
           11218]
          Length = 172

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 11/135 (8%)

Query: 4   TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  L+     +  P    + + A    +   +L KI     KAG+VE+  GR+
Sbjct: 5   SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG +L +   +I++LD+  A +    + +C         F          G CG+ +V+R
Sbjct: 65  GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVHQWACEGMCGIHAVMR 124

Query: 113 KALNAFFDVLTQYSI 127
           KA N    VL + SI
Sbjct: 125 KAQNQMQQVLAEQSI 139


>gi|302868852|ref|YP_003837489.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
           ATCC 27029]
 gi|315504679|ref|YP_004083566.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
 gi|302571711|gb|ADL47913.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
           ATCC 27029]
 gi|315411298|gb|ADU09415.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
          Length = 156

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R     A            P    QIA A  I   FL  IL  L + GI
Sbjct: 1   MRLSARVDYALRAAAELASVAVGGTTGRSRPVTAEQIARAQDIPPKFLESILLQLRRGGI 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V   RG  GG  L RPA +I++ +V++  +            ++         L  V   
Sbjct: 61  VHAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAR-ALQDVWIA 119

Query: 114 ALNAFFDVLTQYSIECLVR 132
              +  ++L   +I  +  
Sbjct: 120 LRASEREILELVTIADVAA 138


>gi|119513040|ref|ZP_01632097.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
           spumigena CCY9414]
 gi|119462320|gb|EAW43300.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
           spumigena CCY9414]
          Length = 147

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  + +AG+V ++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPGYGPASVRSIALRQDIPAPYLEKLLIEMRRAGLVTSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L     QI+I  +++A  E+                       ++ ++      
Sbjct: 61  SIGGYQLALKPAQISIGQILEAVGETITRLPHHTPTPAQ---TEDWVTFTLWQRLNQKLK 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           + L   ++  L  +  S +     
Sbjct: 118 EALYSITLADLYYDARSWQASLGE 141


>gi|320175095|gb|EFW50208.1| Iron-sulfur cluster regulator IscR [Shigella dysenteriae CDC
           74-1112]
          Length = 152

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 11  IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + 
Sbjct: 1   MTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKD 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A  I + +V+ A +ES     C             C   ++ R   +     L   ++  
Sbjct: 61  ASSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGE 118

Query: 130 LVRNRSSI 137
           LV N+  +
Sbjct: 119 LVNNQEVL 126


>gi|218438424|ref|YP_002376753.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Cyanothece sp. PCC 7424]
 gi|218171152|gb|ACK69885.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7424]
          Length = 147

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    +   +L K+L  + +AG+V+++RG
Sbjct: 1   MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L     QI++  +++A  E+         +  D          S+ ++      
Sbjct: 61  CQGGYQLACEPSQISLGQILEAVGETIEP---LPRYNPDTEQAEDWVTFSLWKRLHLKLK 117

Query: 120 DVLTQYSIECL 130
           + L   ++  L
Sbjct: 118 EALHSITLADL 128


>gi|117926820|ref|YP_867437.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610576|gb|ABK46031.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
           MC-1]
          Length = 141

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++ TDYG  V+M+ A   +  +  S+IA+   + E  + K+L+ +V+A ++ +VRG +
Sbjct: 3   RLSRMTDYGTLVMMHMAKAPERVHSASEIAQHTKLPEPSVRKVLKIMVRAELLCSVRGLK 62

Query: 62  GGVRLCRPADQITILDVVKATEES-FFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
           GG RL +   +I++  ++ A E +   + +C    + D C    +C +         A  
Sbjct: 63  GGYRLAKLPLEISLEALITALEGTAVAITDCCDDEQTDHCEQFDACHMRPHWVVINEAIR 122

Query: 120 DVLTQYSIECLVRNRSS 136
             L   +++ L+ +   
Sbjct: 123 HALQGVTVQDLLSSADP 139


>gi|292492144|ref|YP_003527583.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580739|gb|ADE15196.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
           Nc4]
          Length = 136

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  Y I  +M  A+        +  IA+   IS  +L +I   L   G+VE VRG
Sbjct: 1   MRLSNRPRYAISAMMNLALAKQPSSVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R A++ITI +++ A +             +   +           +      
Sbjct: 61  PGGGYHLARAAEEITIAEIIAAVDKQPGKLNPLAIANNSVSEAER--------LWNDFSA 112

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
             +D L Q ++  L R    +++
Sbjct: 113 RLYDFLNQITLADLTRRWPHLRQ 135


>gi|282898861|ref|ZP_06306848.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196388|gb|EFA71298.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 186

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    I   +L K+   +  AG+V ++RG
Sbjct: 40  MKLTTRGHYSVKALLDLSLQPKYGPASVKAIASRQEIPAAYLEKLFIEMRHAGLVHSLRG 99

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R   QI+I ++++A  E+        S              ++ ++      
Sbjct: 100 SIGGYKLARHPQQISIGEILEAVGENITDLAVKVSPSTQ---AEDWVTFTLWQRLNQKLR 156

Query: 120 DVLTQYSIECL 130
           + L   ++  L
Sbjct: 157 ESLYSITLADL 167


>gi|291297814|ref|YP_003509092.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567034|gb|ADD39999.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 158

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T   ++ +   +  +   D P   +++AE       +L K LQ L +AGIV +  G+
Sbjct: 1   MKMTSGVEWALHACVTLSQAAD-PVPAARLAELHGTPPAYLAKQLQSLARAGIVTSTAGQ 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L RPA ++T+L+VV+A + +     C         A     C    SC +   + 
Sbjct: 60  VGGYTLTRPATEVTVLEVVQAVDGTEPAYRCTEIRQRGPLAVPAEKCER--SCAIARAMA 117

Query: 113 KALNAFFDVLTQYSIECLVR 132
           +A  A+   L++ +I  L R
Sbjct: 118 EAQEAWSRALSRITIADLAR 137


>gi|331698727|ref|YP_004334966.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953416|gb|AEA27113.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 160

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++   ++ +   +        P   +++A    +S  +L K LQ L +AG+V +V+G+
Sbjct: 1   MKMSGGVEWALHCCVVL-TGATEPVPAARLAAFHDVSPTYLAKQLQALSRAGLVRSVQGQ 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG +L R    IT+LDVV+A +       C        FA+    C +   CG+ SV+ 
Sbjct: 60  AGGYQLTRDPQAITVLDVVEAVDGRQSAFVCTEIRQRGPFAATPEQCRV--PCGIASVMY 117

Query: 113 KALNAFFDVLTQYSIECLV 131
            A  A+ D L   +I  L 
Sbjct: 118 DADRAWRDSLRATTIADLA 136


>gi|159038921|ref|YP_001538174.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917756|gb|ABV99183.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola
           CNS-205]
          Length = 156

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R +   A                 QIA A  I   FL  IL  L + G+
Sbjct: 1   MRLSARVDYALRAVAELASVTSGVSTGRGRTVTADQIARAQEIPPKFLESILLQLRRGGV 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V   RG  GG  L RPA++I++ +V++  +            ++         L  V   
Sbjct: 61  VRAQRGPEGGYWLARPAEEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 119

Query: 114 ALNAFFDVLTQYSIECLV 131
              +   +L   ++  + 
Sbjct: 120 LRASERQILELVTVADVA 137


>gi|326404674|ref|YP_004284756.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325051536|dbj|BAJ81874.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 152

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++ TDY + VL+  A           IA    I E  + K+L+ L ++G+V + RG  G
Sbjct: 1   MSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGAHG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL RP   I I DV+ A +    +  C       C     C +        +A  D L
Sbjct: 60  GYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGSCDSASLCPMAGRWGVVNDAISDAL 119

Query: 123 TQYSIECL 130
              S++ +
Sbjct: 120 NAISLDDM 127


>gi|326330461|ref|ZP_08196769.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
 gi|325951736|gb|EGD43768.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
          Length = 151

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 13/154 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +  + H   P    ++AE   +S+ +L K LQ L +AGIV    GR
Sbjct: 1   MKLSTGVEWSLHCCVVLS-HAPGPVASGRLAELLGVSKTYLAKHLQALARAGIVRPSEGR 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R  D++T+LDVV+A E       C         A+    C     CG+  V+ 
Sbjct: 60  DGGYELTRAPDEVTVLDVVQAVEGRRPAFRCTEIRQQGLLAAPPERC--RSMCGIAKVMA 117

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNAG 144
            A  A+   L   +I  L    +   ++ +   G
Sbjct: 118 DAEEAWRASLAGVTIGDLSDRFDTGPMRDVLLEG 151


>gi|15964295|ref|NP_384648.1| hypothetical protein SMc02238 [Sinorhizobium meliloti 1021]
 gi|307307031|ref|ZP_07586770.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307320111|ref|ZP_07599531.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|15073472|emb|CAC45114.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894157|gb|EFN24923.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306901971|gb|EFN32570.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 168

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I  +   + +        + +AE   +S  +L K LQ +  AG++E V G
Sbjct: 1   MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKA 114
            +GG RL R  ++IT+LD+V A E       C        +   C     C +   + +A
Sbjct: 61  PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYSCKPAAPCTINVAMLRA 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
             A+   L + +I  ++ +  +I +
Sbjct: 121 EQAYRAELRRVTIAAIMADLKAIDR 145


>gi|145219397|ref|YP_001130106.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205561|gb|ABP36604.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeovibrioides DSM 265]
          Length = 137

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  + Y A+        + ++A     S+ FL K +Q L +AGI  + +G 
Sbjct: 3   QVSRKFEYGLHAVAYLAMKGSGEAVTVKEMARDIGFSQEFLAKAMQNLTRAGIASSAQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R   +IT+ D+  A E    +  C  +    C +  SC +   +    N+   
Sbjct: 63  KGGYMLARLPSEITVADIGLAIEGEPHMVRCIVNAD-SCEIYSSCRMRGYIIGLQNSIQG 121

Query: 121 VLTQYSIECLVRNRS 135
           +L   ++  L++   
Sbjct: 122 LLASTTVATLLQRNE 136


>gi|327405892|ref|YP_004346730.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
           DSM 16823]
 gi|327321400|gb|AEA45892.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
           DSM 16823]
          Length = 151

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + KR+ Y I+ L   A    +     I+ IAE   I   FL  IL  L   G+V +  G 
Sbjct: 2   IPKRSKYAIQALKCLAKVYRDKKHLSIATIAEEENIPRKFLEAILLQLRNGGMVGSKMGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
            GG  L +  D+I +  +++ T     +  C    F    I+CP    CGL  V+ +   
Sbjct: 62  NGGYFLVKHPDEIVLSSIIRVTGGPIALLPCVSLNFYEECIECPHEELCGLHDVMLEVRE 121

Query: 117 AFFDVLTQYSIECLV-RNRSSIKK 139
           A   +L++ S+  L+ R +  ++K
Sbjct: 122 ASIHILSKTSLADLILREKKLMRK 145


>gi|221639874|ref|YP_002526136.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
           KD131]
 gi|221160655|gb|ACM01635.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
           sphaeroides KD131]
          Length = 155

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ +  Y +  L+  A+     +    ++++++   IS  +L ++   L +AG+VE V
Sbjct: 1   MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG +L R A+ I + ++++A EE+       A          +  LT+ L + L+A
Sbjct: 61  RGPGGGYKLARAAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120

Query: 118 -FFDVLTQYSIECLVRNR 134
             +  L Q  +  +++N 
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138


>gi|254471392|ref|ZP_05084794.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
 gi|211959538|gb|EEA94736.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
          Length = 131

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +  D   RI Q+ +    S   + K++  L +AGI+ET+RGR GG +L R A  I++ DV
Sbjct: 1   MQPDVIQRIDQVVQQQGFSRGHVMKLVNQLSRAGILETMRGRGGGFKLGRLAKHISVGDV 60

Query: 79  VKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           V+A E  F V EC       +I C  + SC L  ++++A +AF DVL + +IE
Sbjct: 61  VRAVENDFAVVECLRQSECGEIHCCFLPSCRLKPLMQRASSAFLDVLDEMTIE 113


>gi|116622995|ref|YP_825151.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226157|gb|ABJ84866.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 158

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++  +Y IR  ++ A +       +  IAE   I   FL KILQ L + G++ + +G
Sbjct: 1   MIYSRSAEYAIRAFVHLAQVQEGKYAMVKNIAEQEDIPAHFLAKILQQLARKGLLRSSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L   A +I +LD+V+A +      +C AS   +C     C +        +   
Sbjct: 61  PTGGFALRVDASEIRLLDIVEALDGLAPYQQC-ASGLSECSDDMPCSMHDSWIALRSRIM 119

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
           D L + +I  L +     KK  
Sbjct: 120 DYLGKNTIADLAKALEQKKKSL 141


>gi|254488419|ref|ZP_05101624.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
           GAI101]
 gi|214045288|gb|EEB85926.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
           GAI101]
          Length = 153

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+        +  IAE   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALTDIALQPPGGLVSLGDIAERQSISLPYLEQLFVKLRRAELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I ++D++ A +E        A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLGRPASDIRVVDILSAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N 
Sbjct: 121 YVFLHQTRLSDVVANE 136


>gi|157964665|ref|YP_001499489.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           massiliae MTU5]
 gi|157844441|gb|ABV84942.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           massiliae MTU5]
          Length = 139

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  Y +  ++  A  +   P  +++++    IS  +L +I   L  A +V+ +RG
Sbjct: 1   MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKNADLVKAIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
            +GG  L    ++I I D++ A  E+F +  C+      C P    C    + +      
Sbjct: 61  SKGGYILIGNLEEIKIADIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
            D     SI+  + +  +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139


>gi|238019616|ref|ZP_04600042.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
 gi|237863657|gb|EEP64947.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
          Length = 157

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+  +      S +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 8   MKLNQATDYAFRMVLHMALLPSGTKLTGSVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 67

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C  +G C +   +    +
Sbjct: 68  VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--MGHCAINEAMGTIQD 125

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
              + L Q + + L +    I+
Sbjct: 126 QLINQLEQVNFKTLAQREQLIE 147


>gi|300778846|ref|ZP_07088704.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300504356|gb|EFK35496.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 135

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K++ Y  + L Y     N+ P  IS+IAE   I   FL  IL  L KA I+++ +G+ 
Sbjct: 2   LSKKSQYAFKALSYLVEKRNEGPILISEIAEHKKIPLKFLENILLELKKADILDSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG       + + +  +++       +  C    F     DC     CGL  VL +  +A
Sbjct: 62  GGYFFKENPENVKLAKIIRLVNGPIAMLPCVSLNFYEKCEDC-NEDHCGLHDVLIEVRDA 120

Query: 118 FFDVLTQYSIECLVR 132
             ++L   ++  LV 
Sbjct: 121 SLNILESKTLMDLVD 135


>gi|183984102|ref|YP_001852393.1| putative transcriptional regulatory protein [Mycobacterium marinum
           M]
 gi|183177428|gb|ACC42538.1| conserved hypothetical transcriptional regulatory protein
           [Mycobacterium marinum M]
          Length = 161

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A  +     +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATADSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP   I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL + ++  + 
Sbjct: 120 SVLEETTLADVA 131


>gi|226324474|ref|ZP_03799992.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
 gi|225206922|gb|EEG89276.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
          Length = 148

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+ +K++ YG+R L+  ++++ +    ++ IAE   IS  +L ++   L KAGI+++V+G
Sbjct: 1   MNFSKKSRYGLRALIDLSVYSKESHVALAAIAERNSISPQYLEQVFAALRKAGIIKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +PA +I++ ++++A E  + + E       +         + V+ +      
Sbjct: 61  PQGGYLLAKPATKISVAEILRALEGDYLIEEEDVEGAENGRAAAQAVQSEVIERLNRGLQ 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D+L    +  L +    
Sbjct: 121 DILENLFLSDLEQKYQE 137


>gi|149914909|ref|ZP_01903438.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. AzwK-3b]
 gi|149811097|gb|EDM70934.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. AzwK-3b]
          Length = 153

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  A+   +    +S+I+    +S  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALVDIALQDGESLVTLSEISRRQDVSLPYLEQLFVKLRRANLVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R A +I ++DV+ A +E+    +  A          +  +T+ L ++L+A  
Sbjct: 61  PGGGYRLARSASEIRVVDVLAAVDETVNALQKGAGASGAASGSKAQSMTNRLWESLSAQV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVFLHQTRLSDVVSN 135


>gi|260433735|ref|ZP_05787706.1| iron-sulfur cluster assembly transcription factor IscR
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417563|gb|EEX10822.1| iron-sulfur cluster assembly transcription factor IscR
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 152

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    + +I+E   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPADALVTLGEISERQDISLPYLEQLFVKLRRADLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I +++V+ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLARPASEIRVVEVLAAVDETVDAMHKGAGASGASSGSRAQSLTNRLWESLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  ++ N 
Sbjct: 121 YVFLHQTRLSDVIENE 136


>gi|57237713|ref|YP_178961.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
 gi|86150257|ref|ZP_01068484.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152104|ref|ZP_01070316.1| rrf2 family protein (putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153564|ref|ZP_01071768.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597557|ref|ZP_01100791.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121612186|ref|YP_001000559.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926572|ref|ZP_01810254.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|153952143|ref|YP_001398128.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157415141|ref|YP_001482397.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005492|ref|ZP_02271250.1| hypothetical protein Cjejjejuni_04615 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205356370|ref|ZP_03223135.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562504|ref|YP_002344283.1| putative transcriptional regulator [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283954445|ref|ZP_06371965.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|57166517|gb|AAW35296.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
 gi|85839373|gb|EAQ56635.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840889|gb|EAQ58139.1| rrf2 family protein (putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843290|gb|EAQ60501.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249498|gb|EAQ72458.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190149|gb|EAQ94124.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360210|emb|CAL35005.1| putative transcriptional regulator [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|145845266|gb|EDK22360.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|152939589|gb|ABS44330.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157386105|gb|ABV52420.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345755|gb|EDZ32393.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|283794062|gb|EFC32811.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|284926118|gb|ADC28470.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307747784|gb|ADN91054.1| Rrf2 family protein (Putative transcriptional regulator)
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315058324|gb|ADT72653.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315926477|gb|EFV05859.1| Rrf2 family protein, putative [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929508|gb|EFV08702.1| Rrf2 family protein (transcriptional regulator) [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315932634|gb|EFV11565.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 136

 Score =  123 bits (309), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y +   + P  +  +A    I + FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
           +GG  L +   Q TI ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEENCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++E +++N 
Sbjct: 117 VDEFLDSITLEDIMKNN 133


>gi|238760769|ref|ZP_04621882.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
           35236]
 gi|238701015|gb|EEP93619.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
           35236]
          Length = 169

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 4   TKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +   +YGI  L+       +D    + ++A+   +   +L KI   L  AG+V +  G+ 
Sbjct: 5   SSGVEYGIHSLVCMVDINGDDREMNVREMADLQGVPYDYLAKIFTRLSHAGLVVSSEGKG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
           GG RL RP+  IT+LDV++A +    + +C         F          G CG+ +V+ 
Sbjct: 65  GGFRLARPSALITMLDVIQAVDGQKGIFKCKEIRQRLAIFEEKLPAWVCDGPCGIRAVMD 124

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A     + L +++I  L R 
Sbjct: 125 SAQQRMEEELARHTILDLARK 145


>gi|194333510|ref|YP_002015370.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
           aestuarii DSM 271]
 gi|194311328|gb|ACF45723.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
           aestuarii DSM 271]
          Length = 137

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 2/136 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  ++Y A   +D    + ++A     S+ F+ K LQ L +AG+  +V+G 
Sbjct: 3   KVSRKFEYGLHAIIYLAGKSDDEIVTVKEMAAEIGFSQEFMAKALQKLKRAGLALSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L +PA +IT+ DV +ATE    +  C +S +  C +V SC     +         
Sbjct: 63  KGGYKLGKPAAEITVADVGRATEGEPHLMRC-SSEEGSCEIVRSCPHRGYMFSLEKRIQG 121

Query: 121 VLTQYSIECLVRNRSS 136
           ++ + ++  L++    
Sbjct: 122 LMAETTVMALLQRHEG 137


>gi|323440820|gb|EGA98529.1| Rrf2 family protein [Staphylococcus aureus O11]
          Length = 117

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1   MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L  PA++I+  D+++  E      E   S               +  +  +A  
Sbjct: 61  AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112

Query: 120 DVLTQ 124
           DVL  
Sbjct: 113 DVLDN 117


>gi|118619195|ref|YP_907527.1| putative transcriptional regulatory protein [Mycobacterium ulcerans
           Agy99]
 gi|118571305|gb|ABL06056.1| conserved hypothetical transcriptional regulatory protein
           [Mycobacterium ulcerans Agy99]
          Length = 161

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   +    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATTDSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP   I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL + ++  + 
Sbjct: 120 SVLEETTLADVA 131


>gi|15608427|ref|NP_215803.1| hypothetical protein Rv1287 [Mycobacterium tuberculosis H37Rv]
 gi|15840735|ref|NP_335772.1| hypothetical protein MT1325 [Mycobacterium tuberculosis CDC1551]
 gi|31792479|ref|NP_854972.1| hypothetical protein Mb1318 [Mycobacterium bovis AF2122/97]
 gi|121637215|ref|YP_977438.1| hypothetical protein BCG_1346 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661074|ref|YP_001282597.1| hypothetical protein MRA_1295 [Mycobacterium tuberculosis H37Ra]
 gi|148822504|ref|YP_001287258.1| hypothetical protein TBFG_11313 [Mycobacterium tuberculosis F11]
 gi|167969611|ref|ZP_02551888.1| hypothetical protein MtubH3_16956 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403126|ref|ZP_03415307.1| hypothetical protein Mtub0_05401 [Mycobacterium tuberculosis
           02_1987]
 gi|215410923|ref|ZP_03419731.1| hypothetical protein Mtub9_06240 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426606|ref|ZP_03424525.1| hypothetical protein MtubT9_09527 [Mycobacterium tuberculosis T92]
 gi|215430171|ref|ZP_03428090.1| hypothetical protein MtubE_05718 [Mycobacterium tuberculosis
           EAS054]
 gi|215445463|ref|ZP_03432215.1| hypothetical protein MtubT_05813 [Mycobacterium tuberculosis T85]
 gi|218752991|ref|ZP_03531787.1| hypothetical protein MtubG1_05905 [Mycobacterium tuberculosis GM
           1503]
 gi|219557185|ref|ZP_03536261.1| hypothetical protein MtubT1_07730 [Mycobacterium tuberculosis T17]
 gi|224989690|ref|YP_002644377.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253799668|ref|YP_003032669.1| hypothetical protein TBMG_02694 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231544|ref|ZP_04924871.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364183|ref|ZP_04980229.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550293|ref|ZP_05140740.1| hypothetical protein Mtube_07514 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186223|ref|ZP_05763697.1| hypothetical protein MtubCP_09373 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200337|ref|ZP_05767828.1| hypothetical protein MtubT4_09463 [Mycobacterium tuberculosis T46]
 gi|260204542|ref|ZP_05772033.1| hypothetical protein MtubK8_09578 [Mycobacterium tuberculosis K85]
 gi|289442725|ref|ZP_06432469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289446881|ref|ZP_06436625.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554924|ref|ZP_06444134.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289569296|ref|ZP_06449523.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289573949|ref|ZP_06454176.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
 gi|289745032|ref|ZP_06504410.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749839|ref|ZP_06509217.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753363|ref|ZP_06512741.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757386|ref|ZP_06516764.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761441|ref|ZP_06520819.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994844|ref|ZP_06800535.1| hypothetical protein Mtub2_10117 [Mycobacterium tuberculosis 210]
 gi|297633836|ref|ZP_06951616.1| hypothetical protein MtubK4_06924 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730823|ref|ZP_06959941.1| hypothetical protein MtubKR_07014 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524790|ref|ZP_07012199.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775455|ref|ZP_07413792.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
           SUMu001]
 gi|306781632|ref|ZP_07419969.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
           SUMu002]
 gi|306784008|ref|ZP_07422330.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
           SUMu003]
 gi|306807174|ref|ZP_07443842.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
           SUMu007]
 gi|306967373|ref|ZP_07480034.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
           SUMu009]
 gi|307079278|ref|ZP_07488448.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083848|ref|ZP_07492961.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
           SUMu012]
 gi|313658155|ref|ZP_07815035.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
           tuberculosis KZN V2475]
 gi|54040094|sp|P67160|Y1318_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb1318
 gi|54042641|sp|P67159|Y1287_MYCTU RecName: Full=Putative HTH-type transcriptional regulator
           Rv1287/MT1325
 gi|1322411|emb|CAA97753.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880926|gb|AAK45586.1| Rrf2 family protein [Mycobacterium tuberculosis CDC1551]
 gi|31618068|emb|CAD94179.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492862|emb|CAL71333.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600603|gb|EAY59613.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149697|gb|EBA41742.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505226|gb|ABQ73035.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148721031|gb|ABR05656.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224772803|dbj|BAH25609.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321171|gb|ACT25774.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289415644|gb|EFD12884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289419839|gb|EFD17040.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439556|gb|EFD22049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289538380|gb|EFD42958.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
 gi|289543050|gb|EFD46698.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685560|gb|EFD53048.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690426|gb|EFD57855.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289693950|gb|EFD61379.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708947|gb|EFD72963.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289712950|gb|EFD76962.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494584|gb|EFI29878.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216075|gb|EFO75474.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325593|gb|EFP14444.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331243|gb|EFP20094.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
           SUMu003]
 gi|308346415|gb|EFP35266.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
           SUMu007]
 gi|308354987|gb|EFP43838.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
           SUMu009]
 gi|308362898|gb|EFP51749.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366483|gb|EFP55334.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720243|gb|EGB29342.1| hypothetical protein TMMG_01982 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902908|gb|EGE49841.1| hypothetical protein TBPG_00763 [Mycobacterium tuberculosis W-148]
 gi|328459414|gb|AEB04837.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 161

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A   +    +   +A A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RP  +I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  REGGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLV 131
            VL + ++  + 
Sbjct: 120 SVLEETTLADVA 131


>gi|257063216|ref|YP_003142888.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256790869|gb|ACV21539.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 136

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R+ Y + V++  A    +    + +IA+   ISE +L  IL+ LVK G +  VRG
Sbjct: 1   MLFSTRSQYALSVMVDLAERQAEGYTPLKEIADRQGISEKYLESILKVLVKNGFLIGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L R  D  T+ DV++ TE+S       +    +          ++ R   +A  
Sbjct: 61  KGGGYKLTRNPDLYTVGDVLRLTEDSLTQTVEVSQSTNE-------KTAAMWRGLGDAIN 113

Query: 120 DVLTQYSIECLV 131
             L   ++  L 
Sbjct: 114 GYLDSVTVADLA 125


>gi|86141875|ref|ZP_01060399.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
 gi|85831438|gb|EAQ49894.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
          Length = 137

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A H    P +I  IA++  IS+ FL  I+  L KAG + + +G+ 
Sbjct: 2   LSKKTKYGLKALAYVAKHKGEDPVQIGAIAKSENISQKFLESIMLTLRKAGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R  ++I +++V++  E    +  C    F     DCP   +C + S++ +  ++
Sbjct: 62  GGYYLRRQPEEIKMVEVMRILEGPVSMVPCVSLNFYEKCDDCPDETTCSVHSLMVQLRDS 121

Query: 118 FFDVLTQYSIECLVRN 133
              VL + ++  L+  
Sbjct: 122 NLAVLNKNTLADLIAE 137


>gi|307824109|ref|ZP_07654336.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
 gi|307734893|gb|EFO05743.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
           tundripaludum SV96]
          Length = 149

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY   +L + A          +I+    I+   + KIL+ LV A ++ + RG +
Sbjct: 3   RLSKLTDYATVILSFMAREKAQVRAAMEISTVTGIALPTVSKILKLLVNADVLISTRGAK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R  ++I++  V+ A E    + EC  SH+  C     C +            + 
Sbjct: 63  GGYVLARMPEEISVAAVISALEGPIALTECSISHQG-CEQASGCDILGNWSLINQTIHNA 121

Query: 122 LTQYSIECLVR 132
           L   ++  L+R
Sbjct: 122 LESVTLADLIR 132


>gi|239916899|ref|YP_002956457.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|281414646|ref|ZP_06246388.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|239838106|gb|ACS29903.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
          Length = 157

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +RVLM  A          QIA+   +    + K +  L + G +E +RGR
Sbjct: 1   MKLSAYTDVCLRVLMTLAAAEGERVTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +        + ++V+A      V +C      + CP    C L   L +A  AF 
Sbjct: 61  NGGATIAEAGLDQRVGELVRALSSRDEVIDCAGHETGVPCPFAADCRLREALARAREAFM 120

Query: 120 DVLTQYSIECLVR 132
             L   ++  LVR
Sbjct: 121 AELDLLTVRDLVR 133


>gi|325962157|ref|YP_004240063.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468244|gb|ADX71929.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 149

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R LM  A   +        IA++       + K +  L   G+++ VRG
Sbjct: 1   MKINAFADVSLRALMVLAAAPEGALLTTQNIADSVGTPYNHVSKAMAKLRSLGLIDVVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L       T+  V++  +     A+C A    +CPL+  C L S L +A  AF+
Sbjct: 61  RTGGSSLSHAGRYATVGQVLRQLDTRTDAADCVAPGG-NCPLINECKLRSALARAREAFY 119

Query: 120 DVLTQYSIECL 130
             L    I  L
Sbjct: 120 RELDSVVIADL 130


>gi|300934634|ref|ZP_07149890.1| Rrf2 family transcriptional regulator [Corynebacterium resistens
           DSM 45100]
          Length = 162

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT   D G+R +M    +       I+ +A+A   S+  L +++  LV+  +V +VRG
Sbjct: 1   MRLTTFADLGLRSMMILGDLPEGERLTIADLAKATNASDNHLARVIAKLVEMKLVVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
           R GG  L   A   ++  +++  E S  V +C  +    CPL    C L   L  A  AF
Sbjct: 61  RNGGAYLSDTARGASVGKILRQIEGSSEVVDCAGTR--PCPLAARDCALRHRLADAQEAF 118

Query: 119 FDVLTQYSIECLVR 132
           F  L   +I  L+ 
Sbjct: 119 FATLDDDTIGDLIA 132


>gi|290968345|ref|ZP_06559886.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781620|gb|EFD94207.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 153

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R+++Y A   +      + +A+   I E FL KI++ L  AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLYLASFPEGTKVTGAALADKQNIPERFLLKIMRSLTAAGIMKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
             GG  L R A +IT+ D+++A E    +  C       C     G C + +        
Sbjct: 61  VEGGFSLNRSAKEITLFDIIEAVEGQTELQRCLHDMG-SCTRSCSGMCSIYTAFADIQRD 119

Query: 118 FFDVLTQYSIECLVRNRSS 136
               L   +   L    + 
Sbjct: 120 LAMKLKSINFYDLAAQEAK 138


>gi|254411526|ref|ZP_05025303.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182027|gb|EDX77014.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
           PCC 7420]
          Length = 145

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +T+Y +  L+    H     P +I QIA    I + +L ++L  L +  +V + R
Sbjct: 1   MELSCKTEYTLLALLELTGHYNQGEPLQIRQIAAQQNIPDRYLEQLLATLRRGNLVRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   +IT+LD++   + S       +  + +     S  +    ++  +  
Sbjct: 61  GAKGGYILAREPWRITLLDIMNCLDGSTATT---SGSQTNAITEASAIVQETWQEVRDRT 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
            D+L  Y+++ L    ++ +++
Sbjct: 118 NDILRDYTLQDLWEKLNNRQQL 139


>gi|310658027|ref|YP_003935748.1| transcriptional regulator [Clostridium sticklandii DSM 519]
 gi|308824805|emb|CBH20843.1| putative transcriptional regulator [Clostridium sticklandii]
          Length = 128

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y + ++ Y    +   N  +S +A    IS  +L KIL  LVKA ++++  G
Sbjct: 1   MKYTKATNYALHIMTYFVSQDGKENFSLSPLASHMNISPTYLSKILTQLVKANLIQSSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +P  +I+  DV++A E S  +  C  +    C +         +++A     
Sbjct: 61  VNGGYSLRKPKSEISFYDVIQAIEGSNALFTCELNEDNLCKIE------LAMQEAEEKMV 114

Query: 120 DVLTQYSIECLVR 132
             L +  I  +  
Sbjct: 115 TYLKEKLILDVAN 127


>gi|163746291|ref|ZP_02153649.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanibulbus indolifex HEL-45]
 gi|161380176|gb|EDQ04587.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanibulbus indolifex HEL-45]
          Length = 153

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +     +  IAE   +S  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPEGSLVSLGDIAERQSVSLPYLEQLFVKLRRAELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I ++DV+ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLARPATDIRVVDVLAAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWQGLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N 
Sbjct: 121 YVFLHQTRLSDVVDNE 136


>gi|89054857|ref|YP_510308.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864406|gb|ABD55283.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 152

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +   A+   D    +S +++   +S  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVAMADLALQTGDVLTPLSDLSKRQNVSLPYLEQLFVKLRRAELVVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I ++++ +A +E+       A          +  LT+ L +  +A  
Sbjct: 61  PGGGYRLARPATEIRVVEIFEAVDETVSALHMGAGATGGGSGSRAQSLTNRLWEGFSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V+N 
Sbjct: 121 YVFLHQTRLSDVVKNE 136


>gi|154148684|ref|YP_001406497.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153804693|gb|ABS51700.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis
           ATCC BAA-381]
          Length = 137

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  +++ A + + P  +  I+    I + FL KILQ L + GI+++ +G 
Sbjct: 1   MLFTKASEYALLSMIFIARNKE-PVGVDAISNELKIPKSFLAKILQDLARDGILQSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
           +GG  L +   +I++ ++V++ E+    + EC ++++  CP      C +  +     N 
Sbjct: 60  KGGFLLAKKPLEISLNEIVQSAEKKQNSIFEC-SNNRASCPSNKGEICEIWHIFSGIQNK 118

Query: 118 FFDVLTQYSIECLVRN 133
              +L  +++E  ++ 
Sbjct: 119 VDAILDNFTLENFIKE 134


>gi|182416626|ref|ZP_02948040.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           5521]
 gi|237668057|ref|ZP_04528041.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182379518|gb|EDT77004.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           5521]
 gi|237656405|gb|EEP53961.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 142

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  YG+R L+   +++ +    +  I+E   ISE +L +I   L K GI++  +G
Sbjct: 1   MKISTKGRYGLRALIDICVYSRNEMATVKSISERQNISERYLEQIFSSLRKGGIIKAKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L       TI  ++   E    + +  A        + +  + ++  KA     
Sbjct: 61  AQGGYFLTDEPKNFTIAKILSVLEGDLLLIDVEAEDNN----MENYLIDNLWSKANEQIR 116

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           +     ++E L     +  K
Sbjct: 117 NFFCSMTLEDLSEGYKNKGK 136


>gi|329850522|ref|ZP_08265367.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
 gi|328840837|gb|EGF90408.1| rrf2 family protein transcriptional regulator family protein
           [Asticcacaulis biprosthecum C19]
          Length = 163

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 19/145 (13%)

Query: 13  VLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
            +   A++     P  +S+I+E   IS  +L ++   L KAG+V++ RG  GG  L R A
Sbjct: 2   AMTDLALNGQAGRPISLSEISERQQISLSYLEQLFARLRKAGLVKSARGPGGGYSLSRGA 61

Query: 71  DQITILDVVKATEESFFVAEC----------------FASHKIDC-PLVGSCGLTSVLRK 113
           +++ + ++V A +E      C                 A+ +I C P    C   ++   
Sbjct: 62  ERLFVSEIVLAVDEPIKATRCELTSNKLGANKRLGKDEAAREIGCMPGGQRCLTHNLWED 121

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIK 138
              A  D L+Q S+E +VR R+  K
Sbjct: 122 LGVAIHDYLSQVSLEDVVRKRTRKK 146


>gi|282896000|ref|ZP_06304031.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
 gi|281199110|gb|EFA73980.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
          Length = 147

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    I   +L K+L  +  AG+V ++RG
Sbjct: 1   MKLTTRGHYSVKALLDLSLQPKYGPGSVKAIASRQEIPAAYLEKLLIEMRHAGLVHSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L +   QI+I ++++A  E+        S              ++ ++      
Sbjct: 61  SVGGYKLAKHPQQISIGEILEAVGENIADLAVKVSPSTQ---AEDWVTFTLWQRLNQKLR 117

Query: 120 DVLTQYSIECL 130
           + L   ++  L
Sbjct: 118 EALYSITLADL 128


>gi|291533964|emb|CBL07077.1| rrf2 family protein (putative transcriptional regulator) [Megamonas
           hypermegale ART12/1]
          Length = 135

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR+++  A  +        I+    I + ++ KI + LV A ++E   G 
Sbjct: 1   MQLNITTDYAIRIILALANRDGEVVSSKDISMTMKIPQKYVLKITRSLVAAELIERRSGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GG  L +  ++I++L++VK  E + +V  C       C    V +C +  +     N  
Sbjct: 61  YGGFLLAKKPEEISLLEIVKVMEPTMYVNRCLEEDNY-CSRDAVDNCSIRKIYTNFQNII 119

Query: 119 FDVLTQYSIECLVRNR 134
            +  ++ +I+ L+ N+
Sbjct: 120 EEKFSEITIKTLIDNK 135


>gi|332665390|ref|YP_004448178.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334204|gb|AEE51305.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 137

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++  Y I+ L+Y A        + + IA    I + FL  IL  + +A +V + +G  
Sbjct: 2   LSQKAKYAIKALIYLAKQEKGSLTKTADIASKSSIPKKFLELILIDMKRASLVSSKQGIG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + AD+I + D+ +  + +  +  C    F     DCP   +C +   L +  + 
Sbjct: 62  GGYYLLKDADEINLADIYRLFDGAIAMLPCASLRFYEPCHDCPDEATCLIRKSLIQVRDQ 121

Query: 118 FFDVLTQYSIECLVRN 133
               L + +I+ L + 
Sbjct: 122 TLHALEKTTIKMLTKE 137


>gi|325168404|ref|YP_004280194.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Agrobacterium sp. H13-3]
 gi|325168902|ref|YP_004280692.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Agrobacterium sp. H13-3]
 gi|325064127|gb|ADY67816.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
 gi|325064625|gb|ADY68314.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
          Length = 162

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A + +        +AE   + + +L K LQ L +AG+V T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPDGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
             GG RL R   ++T LDVV+A E S     C        C        G C +  ++ +
Sbjct: 61  PSGGYRLARAPAKLTFLDVVEAVEGSGRTFVCQNIRANNPCRPKGYCESGPCAIARIMWE 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A  A+  VL + +   L
Sbjct: 121 ADEAWRTVLRKVTFADL 137


>gi|222055613|ref|YP_002537975.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564902|gb|ACM20874.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 134

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R++Y +  L+Y A   ++    +  IA A  I   FL +IL  L +A  + ++RG
Sbjct: 1   MKLTSRSEYALLALIYLARTGSENLVPVQTIATAQGIPPKFLEQILLILKRAKFLRSLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
           + GG  L RPA QI + +V++  + +    E  + +  +  P+     L SV +   +  
Sbjct: 61  QAGGYALARPASQIHLAEVIRLFDGALAPTESVSVYFYESTPIEKEQKLISVFKDIRDYV 120

Query: 119 FDVLTQYSIECL 130
              L   ++  +
Sbjct: 121 AGKLENTTLADV 132


>gi|160894918|ref|ZP_02075692.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
 gi|156863349|gb|EDO56780.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
          Length = 128

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 14  LMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++Y A+++D     + +I++   +S+ +L  I + L KA ++E   G  GG RL R  ++
Sbjct: 1   MVYLAVNHDGSFIPLKEISQHEELSQKYLESITRMLSKAHLIEAASGHGGGYRLTREPEE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
            ++ +++K TE +     C     + C     C    + +   +   +     ++  + 
Sbjct: 61  YSVGEILKLTEGTLAPVSCLKDDSVPCDRSELCYTLPIWQGLADLINNYFDNMTLADVA 119


>gi|189499741|ref|YP_001959211.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189495182|gb|ACE03730.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 132

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++++ +YG+  ++Y A   +     + ++A     S+ FL K LQ L KAGIV +V+G 
Sbjct: 3   QVSRKFEYGLHAVVYLARRESGEVVTVKEMAADIGFSQEFLAKALQQLKKAGIVLSVQGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG RL    ++ITI D+ +A E    +  C +S +  C +V SC   S + K       
Sbjct: 63  KGGYRLAGLPEEITISDIARAIEGPPRLMRC-SSERGKCEIVSSCSNRSTMFKLEKNIDA 121

Query: 121 VLTQYSIECLV 131
           ++    +  L+
Sbjct: 122 LMADTKVSALL 132


>gi|291301253|ref|YP_003512531.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570473|gb|ADD43438.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 149

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R  +      +      ++A A  I   F   IL  L + G++E+ RG 
Sbjct: 1   MRLSARVDYALRAAVELTSVGEEWLSAEKVAGAQKIPGKFCESILLQLRRGGLIESRRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA +I++ DV++  +             +D     +  L  V      +   
Sbjct: 61  DGGHRLARPAKEISLADVIRVVDGPLVGVRGQRPEHVDYDGTAA-ALRDVWIALRASERK 119

Query: 121 VLTQYSIECLVRNR--SSIKKI 140
           +L   ++  +   +  ++++K+
Sbjct: 120 ILESVTLADVAGGKLPAAVRKL 141


>gi|163736408|ref|ZP_02143827.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163741057|ref|ZP_02148449.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Phaeobacter gallaeciensis 2.10]
 gi|161385410|gb|EDQ09787.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Phaeobacter gallaeciensis 2.10]
 gi|161390278|gb|EDQ14628.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 152

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +     +  I++   IS  +L ++   L ++G+V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPEGSLVVLGDISKRQDISLPYLEQLFVKLRRSGLVVSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL  P   I ++DV+ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLAHPPSDIRVVDVLSAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  ++ N
Sbjct: 121 YVFLHQTRLSDVIEN 135


>gi|221319934|ref|ZP_03601228.1| hypothetical protein BsubsJ_14863 [Bacillus subtilis subsp.
          subtilis str. JH642]
          Length = 111

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 2  HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++ +  YG+ +++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG 
Sbjct: 3  KISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGA 62

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC 91
           GG  L    D IT  D+++  E    + +C
Sbjct: 63 YGGYVLGSEPDAITAGDIIRVLEGPISLLKC 93


>gi|332765883|gb|EGJ96094.1| iscR transcriptional regulator IscR transcriptional dual regulator
           [Shigella flexneri 2930-71]
          Length = 149

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A  
Sbjct: 1   MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I + +V+ A +ES     C             C   ++ R   +     L   ++  LV 
Sbjct: 61  IAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118

Query: 133 NRSSI 137
           N+  +
Sbjct: 119 NQEVL 123


>gi|260906649|ref|ZP_05914971.1| BadM/Rrf2 family transcriptional regulator [Brevibacterium linens
           BL2]
          Length = 152

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T ++DY +R L+  A + +  P    ++ +   I + FL  IL  L +  IV +VRG
Sbjct: 1   MRVTTKSDYALRALIEIANVTDGEPISADELGKRQDIPKGFLQAILADLRRVEIVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG RL + A   T+ DV++A +             ++        L  V   A  A  
Sbjct: 61  KSGGWRLTKSASATTVADVIRAVDGPLVSIYGQRPEVVEYDDAAE-SLQQVWIAARFALR 119

Query: 120 DVLTQYSIECLVRN 133
           DVL Q +IE L   
Sbjct: 120 DVLEQVTIEQLAAK 133


>gi|150019861|ref|YP_001312115.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906326|gb|ABR37159.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 137

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++ + +DY  R+++  +    D       ++E   I   FL K+ + L +AGI+++ RG
Sbjct: 1   MNINQESDYAFRIILMLSKEGLDNKLDAKSLSEKGNIPLRFLLKLTRKLTQAGILKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
             GG  + R    IT+ DVV+A +    V  C    K  C     G C +   L    N 
Sbjct: 61  VNGGYAITREPKDITLKDVVEAIQGPIIVTRCVYDGKA-CSANKAGHCSIHKALYNIQNT 119

Query: 118 FFDVLTQYSIECL 130
             + L + + + L
Sbjct: 120 MINELEKVNFDKL 132


>gi|218441057|ref|YP_002379386.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Cyanothece sp. PCC 7424]
 gi|218173785|gb|ACK72518.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7424]
          Length = 151

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L  + +Y +  L+  A  +   +P  +++I     I E +L +IL  L + G++++ RG 
Sbjct: 11  LPSKVEYALLALLEMASQSHLKHPLTVNEITAKQPIPERYLEQILATLRRGGLLKSQRGS 70

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R    IT+L++V   E +  V E       D   V    +     +A  A   
Sbjct: 71  KGGYVLAREPQDITLLEIVSIIEGNRQVKE-----NTDLSTVEMKLIQDSWHQANQAAQS 125

Query: 121 VLTQYSIECLVRNRSS 136
           +L QY++  L + R S
Sbjct: 126 ILEQYTLLDLCKQRES 141


>gi|189347463|ref|YP_001943992.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM
           245]
 gi|189341610|gb|ACD91013.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
           DSM 245]
          Length = 168

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK TDY IR L+     N        IA    I   FL ++LQ +++ G+V +  G
Sbjct: 1   MKVLTKNTDYAIRALLSLGSANGGYLSARSIAGEQDIPYQFLRRLLQEMIRHGLVVSKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    I + ++++  +    V+EC    +I C     C L   + +      
Sbjct: 61  AGGGFMLARNPHDIRVRELIEIFQGRVQVSECLFRKQI-CANRARCVLRHEIMRIEQVVE 119

Query: 120 DVLTQYSIECLVRN 133
                 +I  L+ +
Sbjct: 120 REFDNITIGKLLGD 133


>gi|283957139|ref|ZP_06374603.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791315|gb|EFC30120.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 136

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y +   + P  +  +A    I + FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
           +GG  L +  +Q TI ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KGGFALIKEPNQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEKNCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++E +++N 
Sbjct: 117 VDEFLDSITLEDIMKNN 133


>gi|330994034|ref|ZP_08317964.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
 gi|329758980|gb|EGG75494.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
          Length = 153

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY +  L+      +       ++ +  I E  + K+L+ L   GIV + RG R
Sbjct: 3   KLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTVAKVLKILATQGIVTSQRGAR 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL  P ++I+I  V++A +    +  C      DC    +CGL         A  + 
Sbjct: 62  GGYRLAHPLEEISIAAVIEAIDGPISLTTCVDGG--DCDARSTCGLGGEWDLVNTAIRNA 119

Query: 122 LTQYSIECL 130
           L+   +  +
Sbjct: 120 LSVIMLSDM 128


>gi|296536722|ref|ZP_06898782.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296262953|gb|EFH09518.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 183

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY + VL               +A A  I+E  + K+L+ L  A +VE +RG R
Sbjct: 27  RLSKLTDYAVVVLARL-EAEGGVQTAPGLAAATGIAEPTVSKVLKHLGHASLVEGLRGAR 85

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RP   I + DV+ A +    +  C       C   G C +         A    
Sbjct: 86  GGYRLARPLSSIPLSDVICAIDGPIALTACVDGATGGCEAEGLCPVRGRWDPVNEAIRAA 145

Query: 122 LTQYSIECLVRNRSS 136
           L+  S+  +   RS+
Sbjct: 146 LSAISVADIAAPRSA 160


>gi|260426151|ref|ZP_05780130.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
 gi|260420643|gb|EEX13894.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
          Length = 162

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +T++T Y ++ LM   A+       I ++++     + FL  IL  L KAG +   RGR 
Sbjct: 2   ITQKTKYALKSLMTLGALEKGAALTIEEVSQRTGAPKRFLEHILLDLRKAGYLGARRGRA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNA 117
           GG  L R   ++++ ++++  +       C +        DC    +C L  V  +   +
Sbjct: 62  GGYFLIREPSKVSLGELLQQIDGPIAPLPCLSRRSYRRCDDCDDEEACQLRRVFGEIFWS 121

Query: 118 FFDVLTQYSIECLVRNR 134
           +  ++   +++ L+R+ 
Sbjct: 122 YLLLIESLTLQDLLRDP 138


>gi|254455677|ref|ZP_05069106.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082679|gb|EDZ60105.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
          Length = 130

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 13  VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L+  A  ++  P  +  I+    IS  +L +I   L K  IV+++RG +GG  L +  +
Sbjct: 2   ALVDLARFDNINPVSLRDISLRQGISLDYLEQIFSKLKKDQIVKSIRGTQGGYVLSKKPN 61

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130
           +I + ++  A +E     +C    K  C    + C   ++  +  N       + S+E L
Sbjct: 62  EIKLTNIFHAVDEKVKTVQCKKESKKGCNGKATKCVTHNLWDELENHINSFFDKKSLEDL 121

Query: 131 VRNRSSIK 138
           +++ +  +
Sbjct: 122 LKSSTENR 129


>gi|29827903|ref|NP_822537.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29605004|dbj|BAC69072.1| putative transcriptional regulator [Streptomyces avermitilis
           MA-4680]
          Length = 160

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++   ++ +   +      + P   +++AE   +S  +L K LQ L +AG+V +V+G+
Sbjct: 1   MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R    IT+LDVV+A +       C         A+    C +   C +   + 
Sbjct: 60  AGGYVLTREPASITVLDVVEAVDGPDQAFTCTEIRQRGPLATPAESCAV--PCAIARAMT 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A  A+   L   SI  LV+N
Sbjct: 118 GADAAWRAALRAVSIADLVQN 138


>gi|145595671|ref|YP_001159968.1| Rrf2 family transcriptional regulator [Salinispora tropica CNB-440]
 gi|145305008|gb|ABP55590.1| transcriptional regulator, BadM/Rrf2 family [Salinispora tropica
           CNB-440]
          Length = 200

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-------NRISQIAEACCISELFLFKILQPLVKAGI 53
           M L+ R DY +R +   A                 QIA A  I   FL  IL  L + G+
Sbjct: 45  MRLSARVDYALRAVAELASATGGVSTGRGRFVTADQIARAQEIPPKFLESILLQLRRGGV 104

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           V+  RG  GG  L RPA +I++ +V++  +            ++         L  V   
Sbjct: 105 VQAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 163

Query: 114 ALNAFFDVLTQYSIECLVR 132
              +   +L   ++  +  
Sbjct: 164 LRASERQILELVTVADVAD 182


>gi|169333748|ref|ZP_02860941.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259597|gb|EDS73563.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM
           17244]
          Length = 132

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR L+Y A   D       I  A  I E +L+K++    + G VE VRG 
Sbjct: 1   MQLNITTDYAIRSLIYIA-EKDREVSRRDICSATKIPENYLYKLMAKFRECGYVEAVRGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG +L      I++ D+V   E S  +  C     +      G+C + +       +  
Sbjct: 60  DGGYKLIVDPKDISVFDIVTLVEGSININRCALDGRECSKDGHGNCKVHAFYVGLQGSIE 119

Query: 120 DVLTQYSIECLVR 132
            +L + +++ L+R
Sbjct: 120 KILRKTTLKSLMR 132


>gi|83269916|ref|YP_419207.1| hypothetical protein BAB2_1077 [Brucella melitensis biovar Abortus
           2308]
 gi|256015879|ref|YP_003105888.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915]
 gi|82940190|emb|CAJ13243.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
           Abortus 2308]
 gi|255998539|gb|ACU50226.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915]
          Length = 131

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 14  LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ GG  L  PA +
Sbjct: 1   MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLAHPASE 60

Query: 73  ITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           I I ++++A + +     C +      C       C +  V+     A  +VL   ++  
Sbjct: 61  IAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAIANVLDHRTLAD 120


>gi|56698540|ref|YP_168916.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680277|gb|AAV96943.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  T+  ++        A +  D       +AE   + E +L K +Q L  AGIVET RG
Sbjct: 1   MKHTEGLEWAAHACSLLAALPPDTSLPARLLAEFFDLPEPYLAKQMQKLSAAGIVETRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEES------FFVAECFASHKIDCPLVGSCGLTSVLRK 113
            RGG  L R   +I++L +V+A +          +  C  S   D   +  CG+   + +
Sbjct: 61  PRGGYALARAPAEISLLQMVQAIDGETRHFTCTELRRCGPSGVEDSQYLRPCGIARSMWR 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+   L   ++  L+R
Sbjct: 121 AEAAWRRELAGVTLADLLR 139


>gi|315650361|ref|ZP_07903433.1| transcription regulator [Eubacterium saburreum DSM 3986]
 gi|315487472|gb|EFU77782.1| transcription regulator [Eubacterium saburreum DSM 3986]
          Length = 139

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + V++    +  D    +  IA+   ISE +L  I++ LVK  ++  +RG
Sbjct: 1   MKISTKGRYSLLVMIDLTENQSDDFIPLRDIAKRQDISEKYLESIIKLLVKNKLLVGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +    IT+ +V++  EE+  + E                   +  K      
Sbjct: 61  KGGGYKLTKRPSDITVGEVLRIAEENIMIDE---EDTESMYRTSEYRTIDMWSKLSKMIN 117

Query: 120 DVLTQYSIECLV 131
           D     SI  L+
Sbjct: 118 DYFDSISIADLI 129


>gi|304321528|ref|YP_003855171.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
 gi|303300430|gb|ADM10029.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
          Length = 134

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 14  LMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +   A       P  +  IA    +S  FL +IL+ L +AG+VE+ RG  GG RL R A 
Sbjct: 1   MADIATQEAATFPVTVQAIAARQRLSAPFLEQILRKLRRAGLVESRRGVNGGYRLARRAA 60

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130
           +I + +VV+A EE      C     + C    + C    +           L   S+  +
Sbjct: 61  EIPVSEVVRAVEEEIRSTACQPGAVLGCTGTSARCLTHHLWSGLDRHIESYLADISLADI 120

Query: 131 VRNRSSIKKIFNAG 144
                  ++  + G
Sbjct: 121 ADKTYEAERAVDHG 134


>gi|84503551|ref|ZP_01001602.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanicola batsensis HTCC2597]
 gi|84388041|gb|EAQ01089.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanicola batsensis HTCC2597]
          Length = 165

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +     +S +A+   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPEGGLVTLSDVAKRQNISLPYLEQLFVKLRRAEVVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I +++V+ A +E+       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYRLARPAAEIRVIEVLAAVDETIDALHKGAGATGGLSGTRAQSVTNRLWEGLSAQV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVFLHQTRLSDVVGN 135


>gi|182679703|ref|YP_001833849.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635586|gb|ACB96360.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 162

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +AG+V T+ G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
             GG RL RP  ++T LD+V+A E       C        C          C +  ++ +
Sbjct: 61  PSGGYRLARPPTELTFLDIVEAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+   L   ++  L R
Sbjct: 121 ADEAWRQKLRGVTLSDLGR 139


>gi|312973225|ref|ZP_07787397.1| rrf2 family protein [Escherichia coli 1827-70]
 gi|310331820|gb|EFP99055.1| rrf2 family protein [Escherichia coli 1827-70]
          Length = 149

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG  GG  L + A  
Sbjct: 1   MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I + +V+ A +ES     C             C   ++ R   +     L   ++  LV 
Sbjct: 61  IAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118

Query: 133 NRSSI 137
           N+  +
Sbjct: 119 NQEVL 123


>gi|256391950|ref|YP_003113514.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256358176|gb|ACU71673.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 145

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ RTDY +RVL+  A  +  P     IAE+  I   FL  +++ L  AG+V + RG 
Sbjct: 1   MRVSARTDYAVRVLIELAAADSRPVTCEAIAESQQIPYRFLKAVVRDLRVAGLVRSQRGC 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  + R A +I + DVV+A +             +  P   + GL            D
Sbjct: 61  EGGYWIGREAAEIALADVVRAVDGELLTVNDVPPADVAYP-APAAGLGLFWLALGARVED 119

Query: 121 VLTQYSIECLVRN 133
           +    SI  L+  
Sbjct: 120 LFGAVSIADLLNQ 132


>gi|53804893|ref|YP_113471.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
 gi|53758654|gb|AAU92945.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
          Length = 153

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDY I +L   A   +     +++A+   I+     KIL+ L +AGIV + RG R
Sbjct: 3   RISKLTDYAIILLDQMARAGEQTFAAAELADQTSIAMPTTSKILKALARAGIVTSTRGAR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +  +  ++  ++ A E    + EC A   + C    SC + S       A    
Sbjct: 63  GGYALAQKPEHTSVARIIDAIEGPIALTECSAEQAL-CQQSSSCDVRSHWNVINRAVQTT 121

Query: 122 LTQYSIECLVR 132
           L   S+  ++R
Sbjct: 122 LESVSLADMIR 132


>gi|85709850|ref|ZP_01040915.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
 gi|85688560|gb|EAQ28564.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
          Length = 144

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   DY +  +   A H  D     +++A    +    + +++  L  AG++ +VRG
Sbjct: 1   MRLSNLADYAVITMCQAATHCGDGRVSAAELASETGLPVPTVQRLVSKLTSAGLLRSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG++L RPA  IT+ D+V+A E    +  C      +C     C +            
Sbjct: 61  AGGGLQLGRPAAAITVADIVEAVEGPIALTACV--DHKECEHEARCSMKPHWPIINAKLR 118

Query: 120 DVLTQYSIECL 130
             L + ++E L
Sbjct: 119 GALAEVTLEHL 129


>gi|288941147|ref|YP_003443387.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum
           DSM 180]
 gi|288896519|gb|ADC62355.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum
           DSM 180]
          Length = 156

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  ++  A+H    P  ++ I+ +  IS  +L ++   L    +V  VRG
Sbjct: 1   MRLSTKGRYAVTAMLDLALHAGKGPVTLADISSSQGISLSYLEQLFAALRAKKLVRGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R   +I+I +++ A +E   +  C    + +C     C    +  +  +  F
Sbjct: 61  PGGGYYLGRAPSEISIANIICAVDEWVELTRC--GGRQNCHEGQRCLTHHLWDQLSDEIF 118

Query: 120 DVLTQYSIECLVRN 133
             L+  S++ LV  
Sbjct: 119 RFLSDISLQDLVDR 132


>gi|83593906|ref|YP_427658.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576820|gb|ABC23371.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 154

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + K TDY + +L+  A   D      QIA    +    + K+++ LV+  +V + RG  
Sbjct: 3   RINKLTDYAVVLLVDMA-RTDKVRAAQQIACDTGVPLPTVAKVMKALVRGNLVISQRGAT 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA +IT+ D+++A E    +  C  +    C L   C +     +      + 
Sbjct: 62  GGYGLARPACEITVADMIQALEGPVALTACVETTDDACGLETLCPMHGHWNRVNKRVEEA 121

Query: 122 LTQYSIECLV 131
           L   S+  + 
Sbjct: 122 LRTVSLAEMA 131


>gi|114768830|ref|ZP_01446456.1| Rrf2 family transcriptional regulator [alpha proteobacterium
           HTCC2255]
 gi|114549747|gb|EAU52628.1| Rrf2 family transcriptional regulator [alpha proteobacterium
           HTCC2255]
          Length = 153

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  AI  +     + +I++   IS  +L ++   L +  I+ +VRG
Sbjct: 1   MKLSTKGRYAMIALVDLAIEGEKGLVSLGEISDRQNISLNYLEQLFLKLRRKEIITSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG +L + A+ I + D++ A +E        A          +  L++ L ++L+A  
Sbjct: 61  PGGGYKLAKSAEAIRVSDILTAVDEDMNALSKGAGVSGASSGTRAQSLSNRLWESLSAQV 120

Query: 119 FDVLTQYSIECLVRNR 134
           F  L    +  L+ N+
Sbjct: 121 FVYLHATRLSDLIENQ 136


>gi|239918539|ref|YP_002958097.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|281415252|ref|ZP_06246994.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
 gi|239839746|gb|ACS31543.1| rrf2 family protein, putative transcriptional regulator
           [Micrococcus luteus NCTC 2665]
          Length = 169

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    ++    L+         P   + +AEA  +S  +L K LQ L   G+V +  G
Sbjct: 4   MQLPNGVEWTAHCLVVLEQFGSTQPVPSAALAEAYGLSPTYLNKHLQKLAANGLVTSTPG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
           + GG  L RPA +IT+ DVV A +    +  C        F     +    G C + S +
Sbjct: 64  QAGGFALARPAQEITLADVVDALDGRGPIFRCTEIRCQGLFKERSAEIKASGPCRIASAM 123

Query: 112 RKALNAFFDVLTQYSIECLVR 132
           R+A +A+   L+Q SI  L  
Sbjct: 124 RQAEDAWRSSLSQVSITDLAA 144


>gi|86138298|ref|ZP_01056872.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. MED193]
 gi|85824823|gb|EAQ45024.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. MED193]
          Length = 153

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +     +  I++   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPEGALVVLGDISKRQNISLPYLEQLFVKLRRAELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R   +I ++D++ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLARRPSEIRVVDILSAVDETVDAMHKGAGASGATSGSRAQSLTNRLWESLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +++N
Sbjct: 121 YVFLHQTRLSDVIQN 135


>gi|313894575|ref|ZP_07828138.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313440765|gb|EFR59194.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 162

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A + +      + +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMAMLPSGTKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C   G C +   +    +
Sbjct: 61  VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGTIQH 118

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
                L + + + L +   +I
Sbjct: 119 QLIGQLKEVNFKILAQREQTI 139


>gi|319948404|ref|ZP_08022545.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
 gi|319437958|gb|EFV92937.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
          Length = 152

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L++ +D  +R LM  A+ ++       + IAE+   S   + KI+  LV+ G+ E+ R
Sbjct: 1   MQLSRSSDLALRALMRLAVADEREERMTAAVIAESVEASVSHVAKIVSRLVELGLAESRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  +++  E    V +C       CPL G+CGL   L  A  AF
Sbjct: 61  GRGGGLVITELGRHESVGRLLRRLEGPGEVVQC--EGPTPCPLAGNCGLRRALVDAREAF 118

Query: 119 FDVLTQYSIECLVR 132
           F  L   +++ +VR
Sbjct: 119 FATLDPLTVDGIVR 132


>gi|126736370|ref|ZP_01752112.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
 gi|126714191|gb|EBA11060.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
          Length = 154

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+ +      +++I++   IS  +L ++   L +AG+V++VRG
Sbjct: 1   MKLSTKGRYAMVALADLALQDGNALVNLTEISKRQDISLPYLEQLFVKLRRAGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I + +++ A +E+       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYRLARPAADIRVSEILGAVDETVSAMHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N 
Sbjct: 121 YVFLHQARLSDVVSNE 136


>gi|227820042|ref|YP_002824013.1| Rrf2 family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958592|gb|AAQ87060.1| probable RF2 family protein [Sinorhizobium fredii NGR234]
 gi|227339041|gb|ACP23260.1| putative Rrf2 family transcriptional regulator protein
           [Sinorhizobium fredii NGR234]
          Length = 162

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +AG+V T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKSLAEFHGVPKEYLSKALQSLSQAGLVHTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
             GG RL R   ++T LD+V+A E       C        C        G+C +  V+ +
Sbjct: 61  PSGGYRLARKPAELTFLDIVEAVEGKARTFVCNNIRANNPCRPQGYCETGACAVARVMWE 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+ + L    +  L+ 
Sbjct: 121 ADEAWREKLRSVRLSDLID 139


>gi|163784477|ref|ZP_02179349.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880255|gb|EDP73887.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 143

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           LT      IR ++Y A      D    I +IAE   +S  FL KIL  LVK   +E+ RG
Sbjct: 2   LTTACKDAIRAMIYIAKKQKKSDSFISIKEIAENLNLSFYFLSKILHKLVKDRFLESYRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GGV+L RP + I++ D++ + + +    +C    K +C     C +           +
Sbjct: 62  PNGGVKLARPMENISLYDIILSIDGNNVFTQCILGFK-ECSDTKPCAVHEKWVPERERIY 120

Query: 120 DVLTQYSIE 128
            +    ++ 
Sbjct: 121 QLFKNTTLA 129


>gi|329889571|ref|ZP_08267914.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328844872|gb|EGF94436.1| rrf2 family protein transcriptional regulator family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 142

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 14  LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +   A +       +++IA    IS  +L ++   L K G+V+++RG  GG RL +  ++
Sbjct: 1   MADLAKNGSGRAVSLAEIATRQEISLSYLEQLFARLRKGGLVKSIRGPGGGYRLAKGPEE 60

Query: 73  ITILDVVKATEESFFVAECFASHKI-DCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130
             + D+V A +E      C A      C   G+ C    +           L   S+  +
Sbjct: 61  TVVADIVLAVDEPIRATRCAAHGTPRGCMTGGARCITHDLWEDLGAEIHRYLAGVSLADV 120

Query: 131 VRNRSSIKKI 140
           +  R++  ++
Sbjct: 121 IEKRTNRARM 130


>gi|150395381|ref|YP_001325848.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150026896|gb|ABR59013.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 168

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I  +   + +        + +AE   +S  +L K LQ +  AG++E V G
Sbjct: 1   MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKA 114
            +GG RL R  ++IT+LD+V A E       C        +   C     C +   + +A
Sbjct: 61  PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYTCKPAAPCTINVAMLRA 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
             A+   L + ++  ++ +  +I
Sbjct: 121 EQAYRAELRRVTVAGIIADLKTI 143


>gi|84516301|ref|ZP_01003661.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Loktanella vestfoldensis SKA53]
 gi|84509997|gb|EAQ06454.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Loktanella vestfoldensis SKA53]
          Length = 153

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +++I++   IS  +L ++   L ++G+V++VRG
Sbjct: 1   MKLSTKGRYAMVALADLALQPADALVNLTEISKRQDISLPYLEQLFVKLRRSGLVDSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I + +++ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLSRPASEIRVAEILGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVFLHQARLSDVVSN 135


>gi|157736632|ref|YP_001489315.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           RM4018]
 gi|315635796|ref|ZP_07891058.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
 gi|157698486|gb|ABV66646.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
           RM4018]
 gi|315479775|gb|EFU70446.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
           JV22]
          Length = 132

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT++++Y +  L+  A + + P  +  +++   IS+ FL KI+Q L K  +V + RG 
Sbjct: 1   MLLTRKSEYALLSLISIAKNKE-PKNVDVLSKELDISKSFLAKIMQNLAKHELVISHRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPL--VGSCGLTSVLRKALNA 117
            GG  L +P D+ITIL++V+A EE   +  EC  S +  CP     SC +  +L      
Sbjct: 60  NGGFVLKKPLDEITILEIVEAAEERVPMVFECAPSLQ-SCPNNKAKSCIIWPLLNNLQFK 118

Query: 118 FFDVLTQYSIECLV 131
             D L++ +++ + 
Sbjct: 119 VNDFLSKLTLKDIA 132


>gi|307152699|ref|YP_003888083.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7822]
 gi|306982927|gb|ADN14808.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7822]
          Length = 147

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+  ++     P  +  IA    +   +L K+L  + +AG+V++VRG
Sbjct: 1   MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L     QI++  +++A  E+         +             S+ ++      
Sbjct: 61  CLGGYQLAYQPSQISLGQILEAVGETIQP---LPGYNPVAQQAEDWVTFSLWKRLHFKLK 117

Query: 120 DVLTQYSIECL 130
           D L   ++  L
Sbjct: 118 DALHSITLADL 128


>gi|331003016|ref|ZP_08326528.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413060|gb|EGG92435.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 139

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + V++    +  D    +  IA+   +SE +L  I++ LVK  ++  +RG
Sbjct: 1   MKISTKGRYSLLVMIDLTENQSDEFIPLHDIAKRQELSEKYLESIIKLLVKNKLLVGLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +    IT+ +V++  EE+  + +                   +  K      
Sbjct: 61  KGGGYKLTKSPSDITVGEVLRIAEENIMMDD---EDTEGMHRTSEYRTIDMWGKLSKMII 117

Query: 120 DVLTQYSIECLV 131
           +     SI  L+
Sbjct: 118 EYFDSISIADLI 129


>gi|310815010|ref|YP_003962974.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Ketogulonicigenium vulgare Y25]
 gi|308753745|gb|ADO41674.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Ketogulonicigenium vulgare Y25]
          Length = 153

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T++  Y ++ LM  A          RI +IA      + FL  IL  L  AG++ ++RG
Sbjct: 2   ITQKMKYALKALMVLADAKAEGIAAMRIEEIARRSDTPKRFLEHILLELRNAGVIASIRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  L +  + + +  +++  +       C +        DC    +C L     +  
Sbjct: 62  RAGGYTLIKEPEAVQLSQMLRLIDGPIAPLPCLSRSAYQRCEDCSDEATCRLRRAFSEVF 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
            ++  ++   ++  L+   + + ++  +
Sbjct: 122 WSYLVIIDSLTLADLIAQPAVVAQVIAS 149


>gi|313682187|ref|YP_004059925.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155047|gb|ADR33725.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 137

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  YG+  +   A+H      +I  IAE   I + +L +IL  L K G+++++RG  
Sbjct: 4   ISTKGSYGLAAMYELALHYGQGHLQIRDIAEKANIPQNYLEQILATLRKEGLIQSIRGAG 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +  + I + +++ A E       C  + +   P+     L     +      +V
Sbjct: 64  GGYLLAKAPNAIAVFEILVALEGEL----CNPTDERLQPI-----LHLYWDRIREDMKNV 114

Query: 122 LTQYSIECLVRNRSSIKK 139
             + +++ LV   +++ +
Sbjct: 115 FHE-TLQDLVDQGNALNQ 131


>gi|239990651|ref|ZP_04711315.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
           11379]
          Length = 140

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 10  GIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            +RVLM  A+          ++A    +      K++  L   G+++  RGR GG+ L  
Sbjct: 2   ALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRGRGGGLTLTS 61

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
                +I  +V+  E    V EC       CPL  +C L   LR A +AF+  L   ++ 
Sbjct: 62  AGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFYAALDPITVA 119

Query: 129 CLVRNRSS 136
            LV + + 
Sbjct: 120 DLVASPTG 127


>gi|258542739|ref|YP_003188172.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256633817|dbj|BAH99792.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
 gi|256636876|dbj|BAI02845.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
 gi|256639929|dbj|BAI05891.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
 gi|256642985|dbj|BAI08940.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
 gi|256646040|dbj|BAI11988.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
 gi|256649093|dbj|BAI15034.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
 gi|256652080|dbj|BAI18014.1| transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655137|dbj|BAI21064.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
          Length = 154

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++  DY I +L+      +       +A    + E  + K+L+ L   G V + RG +
Sbjct: 3   KLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGAK 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL RP   I++  V+ A +    +  C    +  C    SCGL         A    
Sbjct: 62  GGYRLARPLADISVASVITAVDGKIALTACVDGGE--CDTGVSCGLCGSWDTINQAIRTT 119

Query: 122 LTQYSIECL 130
           L   S+E +
Sbjct: 120 LEGISLESM 128


>gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037361|gb|ABF63973.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
          Length = 152

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   +    ++ I++   IS  +L ++   L + G+V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I +++++ A +E+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLARPASEIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  ++ N
Sbjct: 121 YVFLHQTRLSDVIEN 135


>gi|283780532|ref|YP_003371287.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283438985|gb|ADB17427.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 178

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R ++Y A  +  P    Q+A    + + +L K+LQ LV+AGI+ + RG  G
Sbjct: 2   FSQTVEYALRAVVYLAADSSQPATTEQLAAVTKVPKAYLSKVLQGLVRAGILHSQRGIGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ L +    +TIL+VV+A E    +  C     +       C L   +  AL      L
Sbjct: 62  GMTLVKSPADLTILEVVQAVEPVARIRSC--PLGLAWHGEHLCPLHRRMDDALALVEQAL 119

Query: 123 TQYSIECLVRNRSSIKKIFNA 143
              ++  ++   S  K +++ 
Sbjct: 120 GSSTLAEVLAEPSRSKPLWDG 140


>gi|158335568|ref|YP_001516740.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305809|gb|ABW27426.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
           MBIC11017]
          Length = 145

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ + +Y +  L+    H     P RI QIA    I + +L ++L  L ++G+V + R
Sbjct: 1   MELSCKCEYAVLALLSLVDHYPQGEPLRIRQIAAQQHIPDRYLEQLLAILRRSGLVCSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L R   +IT+L+++   E     +       +         +  + ++A  A 
Sbjct: 61  GARGGYLLAREPWKITLLEIINCIEGRDPQSNALPQTGLTTEKA---VVQELWQEADQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             +L   +++ L   R + K+I
Sbjct: 118 SKILKNCTLQDLCDRRDAKKQI 139


>gi|23500834|ref|NP_700274.1| RrF2 family protein [Brucella suis 1330]
          Length = 131

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 14  LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ GG  L  PA +
Sbjct: 1   MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLTHPASE 60

Query: 73  ITILDVVKATEESFFVAECFASHKI-DCPL--VGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           I I ++++A + +     C +      C       C +  V+     A  +VL   ++  
Sbjct: 61  IAIGNIIRALDGALAPIACASKTDYRPCEDCNEAECQVRHVMLDVREAIANVLDHRTLAD 120


>gi|223935695|ref|ZP_03627611.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
 gi|223895703|gb|EEF62148.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
          Length = 139

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ ++DY  R ++  A H       R+  +AE   I   +L +IL  L    IV+++R
Sbjct: 1   MKLSAKSDYAARAVIGLARHYQTGESLRVEDLAEGQGIPPNYLVQILIELKSQQIVKSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G+ GG  L RP  +I++ DV++       V +  A     CP      L +  +K   A 
Sbjct: 61  GKEGGYLLARPPAEISMADVLRCVHG--QVFDSPALSDPLCPPE----LRAAWQKLQKAV 114

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
                  + + L+       K++
Sbjct: 115 DAAAESINFQQLLDQSVDKGKMY 137


>gi|197301334|ref|ZP_03166419.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
           29176]
 gi|197299652|gb|EDY34167.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
           29176]
          Length = 147

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K++ YG+R L+  A+++      +  IA+   IS  +L  +   L KA IV++++G
Sbjct: 1   MKLSKKSRYGLRALIDLAVNSRTEQVSLGSIAQRNDISAQYLEHVFSALRKAHIVKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
            +GG  L +  + IT+ ++V+A E S+++ +      +         +   ++ +     
Sbjct: 61  SQGGYFLEKAPELITVAEIVEALEGSYYLED--EEGDMSGLRGDQEAIQHLIIDRINEKN 118

Query: 119 FDVLTQYSIECLVR 132
            ++L   +++ LV 
Sbjct: 119 REILEDITLKDLVE 132


>gi|237748543|ref|ZP_04579023.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379905|gb|EEO29996.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 172

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  T Y IR+L    +    P  I+ ++E   I    +  I   L +  I  ++ G 
Sbjct: 13  MKLSTHTRYAIRILFELHLARG-PISIAALSELTNIGLKTVENIHAVLRQNDITASIIGA 71

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL +P   I++  +++  +E      CF     DCP    C   SV +        
Sbjct: 72  HGGIRLNKPLSAISLGKMIELFDEGVRFVVCFGEKSNDCPRQNVCETRSVWKTISGQIQK 131

Query: 121 VLTQYSIECLVRNRSS 136
            L   S+E ++     
Sbjct: 132 ELDTVSLEAILDQYRE 147


>gi|119356346|ref|YP_910990.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353695|gb|ABL64566.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 164

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK TDY IR L++             IA    I   FL +++Q ++  G+V +  G
Sbjct: 1   MKVLTKNTDYAIRALLFLGARKGSYVSAKTIAAEQEIPYQFLRRLMQDMIGHGLVVSKGG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D I I D+++  +    V+EC    K+ C    +C L   + +      
Sbjct: 61  ASGGFMLLKEPDGIRINDLIEIFQGKIQVSECMFRKKL-CSNRATCVLRHEIMRIEQVVH 119

Query: 120 DVLTQYSIECLVRNRSSIK 138
               + +I  L+R+    +
Sbjct: 120 QEFEKVTIGKLMRDLDEAR 138


>gi|332528839|ref|ZP_08404813.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
           ATCC 19624]
 gi|332041698|gb|EGI78050.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
           ATCC 19624]
          Length = 190

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ + +  ++  A+     P  ++ I +   IS  +L ++   L +A +VE+ RG
Sbjct: 1   MRLSAKSRFAVAAMIDLALREAAGPVPLNSIGQRLQISLSYLEQLFSKLRRANLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A ++++ D+++A E +  +         D    G      +     +   
Sbjct: 61  PGGGYTLGRSAQRVSVADIIRAVEGAQEL---MGEEVADAGEAGLQLTRDLWSGLSSRMM 117

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
           D +    +  L   + S      A
Sbjct: 118 DHMEGIKLHQLCEEQRSKGVDLGA 141


>gi|15644275|ref|NP_229327.1| hypothetical protein TM1527 [Thermotoga maritima MSB8]
 gi|4982094|gb|AAD36594.1|AE001800_4 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 140

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           K   Y +R+L+  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 7   KHVRYALRLLVRLSLEN-RPMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGF 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            L +  D+I+ LDV+   E+   + +C +     C    +C +        +   D+ + 
Sbjct: 66  VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121

Query: 125 YSIECLV 131
            +I+ + 
Sbjct: 122 ITIKDIA 128


>gi|315186460|gb|EFU20220.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6578]
          Length = 138

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG++ L++ A+ H   P  + +IAE   ISE FL  +   L  AG+V + +G
Sbjct: 1   MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RP  +IT+ +VV A E    F     A    D P         +        
Sbjct: 61  KGGGYTLRRPPHRITLREVVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
              +   S+E LV      + I +
Sbjct: 112 QVWMEGRSLEELVGLVKRRRGILD 135


>gi|284032632|ref|YP_003382563.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
           17836]
 gi|283811925|gb|ADB33764.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
           17836]
          Length = 159

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M ++ ++DY +R L+        ++       +++ A  I   FL  IL  L +AG++ +
Sbjct: 1   MRVSAKSDYALRALIEITQRWVANDPSVVSAEELSRAQGIPHGFLQGILADLRRAGVLSS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            RG+ GG +L    ++I++ DV++A +             +         L  V   A  
Sbjct: 61  QRGQSGGWKLAVDPNEISVADVMRAVDGPIVSISGVRPESVAYNERAV-VLQRVWIAARA 119

Query: 117 AFFDVLTQYSIECLVRNR 134
           +  DVL   ++  L + +
Sbjct: 120 SLRDVLEHTTLIDLAKGK 137


>gi|307718973|ref|YP_003874505.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6192]
 gi|306532698|gb|ADN02232.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6192]
          Length = 138

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG++ L++ A+ H   P  + +IAE   ISE FL  +   L  AG+V + +G
Sbjct: 1   MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L RP  +IT+ ++V A E    F     A    D P         +        
Sbjct: 61  KGGGYTLRRPPHRITLREIVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
              + + S+E LV      + I +
Sbjct: 112 QVWMEERSLEELVGLVKRRRGILD 135


>gi|219883349|ref|YP_002478510.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
 gi|219862194|gb|ACL42534.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 164

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ I   +  +   D      ++A    +S  +L K +Q L + G+V +++G 
Sbjct: 4   MKLSGGVEWAIHCCVVLS-RMDGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L RPADQI+ILDVV+A E    +  C          +    C  +  C +   + 
Sbjct: 63  AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
            A  A+ D L + +I  L    SS
Sbjct: 121 TAETAWRDSLNKITIGDLAHQVSS 144


>gi|226195510|ref|ZP_03791098.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei Pakistan 9]
 gi|225932470|gb|EEH28469.1| iron-sulfur cluster assembly transcription factor IscR
           [Burkholderia pseudomallei Pakistan 9]
          Length = 154

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             ++ I++   IS  +L ++   L +  IVE+VRG  GG  L R A  +T+ D++ A +E
Sbjct: 1   MTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVDE 60

Query: 85  SFFVAECFASHKIDCPLV----GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
                +C    K  C       G C    +         + L   S++ LV  + +
Sbjct: 61  PLDATQC--GGKGACEGSKQPDGHCMTHELWSTLNQKMVEYLDSVSLQDLVDQQRA 114


>gi|86358381|ref|YP_470273.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86282483|gb|ABC91546.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 162

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL R   +I  LD+V+A E       C        C   G      C +  V+ +
Sbjct: 61  PSGGYRLARSPSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARVMWE 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A  A+ + L    +  LV
Sbjct: 121 ADEAWRNTLRAVRLSDLV 138


>gi|225028919|ref|ZP_03718111.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
 gi|224953758|gb|EEG34967.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
          Length = 149

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+L+K++ YGI  L+  A++  D   ++S IAE   IS  +L +I   L KAG+V +V+G
Sbjct: 1   MNLSKKSRYGITALIDLAVYAKDQCVQLSSIAERNNISVKYLEQIFSSLRKAGLVRSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAF 118
            +GG  L +  + IT+ DV+ A + S+ +       +         G+++ ++K L +  
Sbjct: 61  PQGGYLLAKRPESITVADVIHALDGSYLL----EDERSVVSGTDEKGISTAIQKLLIDQM 116

Query: 119 FD----VLTQYSIECLVRNRSSIKKI 140
            D    +L Q ++  LV +     ++
Sbjct: 117 NDQTDRLLKQLTLRNLVDSSMEYSQV 142


>gi|120434688|ref|YP_860375.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117576838|emb|CAL65307.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 137

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L Y A   D  P + S+I+E+  IS+ FL  IL  L K+G + + +G+ 
Sbjct: 2   LSKKTKYGIKALAYIARKKDRKPVQASEISESENISQKFLESILLELRKSGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  V++  E    +  C +        DCP   +C +  ++ +  +A
Sbjct: 62  GGYYLIKEPAEIKMTAVIRVLEGPIAMVPCVSLNYYEKCNDCPDEKTCSVHKLMIQLRDA 121

Query: 118 FFDVLTQYSIECLV 131
             +VL + ++E + 
Sbjct: 122 SLNVLGENTLEDIA 135


>gi|86605142|ref|YP_473905.1| transcriptional regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553684|gb|ABC98642.1| putative transcriptional regulator [Synechococcus sp. JA-3-3Ab]
          Length = 150

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT R  Y IR L+  A+       +  IAE   I   +L K+L  L +AG+V + RG 
Sbjct: 1   MRLTTRATYSIRALLDLAML-GQVASVRAIAERQQIPAPYLEKLLIELRQAGLVCSQRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           +GG RL R   +I I  ++ A  ES     AE   + +            ++ R+     
Sbjct: 60  QGGYRLARAPRRIPISAILAAVGESLDPLPAERAGAQQEGSADGLDWVTEALWRRIAQRV 119

Query: 119 FDVLTQYSIECL 130
             VL + ++E L
Sbjct: 120 EQVLEETTLEDL 131


>gi|283780983|ref|YP_003371738.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283439436|gb|ADB17878.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 175

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            + GI  L+   +    P    ++A    +S   + K+L  L +AG+V +  G+ GG  L
Sbjct: 8   VEIGIHTLLCL-LRTTQPVSSHELATYQGLSPTHVAKVLGRLQQAGVVASSPGKTGGYLL 66

Query: 67  CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
            R A +I++ DVV A E    +  C          A    +      C + S +++A +A
Sbjct: 67  ARSAAEISLTDVVDAIEGPKPLFACRDIRFRCELLAGDPPEWATCSMCAVNSAMKRAESA 126

Query: 118 FFDVLTQYSIECL 130
             DVL + ++  L
Sbjct: 127 MRDVLAKTTLRQL 139


>gi|119718638|ref|YP_925603.1| BadM/Rrf2 family transcriptional regulator [Nocardioides sp. JS614]
 gi|119539299|gb|ABL83916.1| transcriptional regulator, BadM/Rrf2 family [Nocardioides sp.
           JS614]
          Length = 152

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ ++DY +R L+  A   D       ++     I   FL  IL  L +AGIV + RG
Sbjct: 1   MRVSAKSDYALRALIEMASRADGRAVSAEELGRLQEIPHGFLQAILADLRRAGIVMSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG R+ R A  +++ DV++A +             +         L  V   A ++  
Sbjct: 61  QSGGWRMGRSAADVSVADVIRAVDGPLVSVYGLRPEAVSYNEAAD-VLQHVWIAARHSLR 119

Query: 120 DVLTQYSIECLVRNR 134
           DV  Q SI+ L   R
Sbjct: 120 DVFEQVSIQQLADGR 134


>gi|271966528|ref|YP_003340724.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270509703|gb|ACZ87981.1| transcriptional regulator protein-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 154

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ RT Y +R ++  A   D P    +IA    I   F   IL  L +AG++ + RG 
Sbjct: 2   MRISARTQYALRAMVALAA-ADNPIHAERIAATQDIPRRFCDNILLQLRRAGLIHSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L  PA++IT+ DV++ +E              +     +  L  +  +       
Sbjct: 61  DGGYWLAHPAEKITLADVIRVSEG-------VTEGGAEYFPGVAAPLADIWAEIRQHQHA 113

Query: 121 VLTQYSIECLVR 132
           +L++ ++  +V 
Sbjct: 114 LLSEITLAQIVA 125


>gi|294811041|ref|ZP_06769684.1| Rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
 gi|294323640|gb|EFG05283.1| Rrf2 family protein, putative transcriptional regulator
           [Streptomyces clavuligerus ATCC 27064]
          Length = 136

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 15  MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           M  A+H+D P     ++A A  +      K++  L   G+VE  RGR GG+ L       
Sbjct: 1   MRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRGRGGGLALTTAGRTG 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           +I  +V+  E +  V  C       CPL  +C L SVLR A  AF+  L  Y+++ LV +
Sbjct: 61  SIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFYTALDPYTVDDLVAS 118

Query: 134 RS 135
            +
Sbjct: 119 PT 120


>gi|300114068|ref|YP_003760643.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540005|gb|ADJ28322.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
           C-113]
          Length = 140

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R  Y I  +M  A+        +  IA+   IS  +L +I   L   G+VE +RG
Sbjct: 1   MRFSNRPRYAISAMMNLALVKQQETVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R A++ITI +++ A +             +   +           +      
Sbjct: 61  PGGGYHLTRTAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFST 112

Query: 117 AFFDVLTQYSIECLVRN 133
             +D L Q ++  L + 
Sbjct: 113 RLYDFLNQITLADLAQR 129


>gi|148270395|ref|YP_001244855.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288979|ref|YP_001739217.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281412702|ref|YP_003346781.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila
           RKU-10]
 gi|147735939|gb|ABQ47279.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila
           RKU-1]
 gi|170176482|gb|ACB09534.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
 gi|281373805|gb|ADA67367.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
           naphthophila RKU-10]
          Length = 140

 Score =  120 bits (302), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           K   Y +R+L+  ++ N  P   S++AE   I+  F  K+L  L ++G+V +++G+ GG 
Sbjct: 7   KHVRYALRLLVRLSLEN-RPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGF 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            L +  D+I+ LDV+   E+   + +C +     C    +C +        +   D+ + 
Sbjct: 66  VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121

Query: 125 YSIECLV 131
            +I+ + 
Sbjct: 122 ITIKDIA 128


>gi|118469239|ref|YP_889225.1| rrf2 family protein (transcriptional regulator) [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170526|gb|ABK71422.1| rrf2 family protein (putative transcriptional regulator)
           [Mycobacterium smegmatis str. MC2 155]
          Length = 156

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + +Y +R ++  A + +    +   +A+A  I   FL  IL  L    +V + RG
Sbjct: 1   MRMSAKAEYAVRAMVQLATVSDGELLKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L RPAD I+I DV++  +             +      +  LT V R    +  
Sbjct: 61  RDGGYALARPADAISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119

Query: 120 DVLTQYSIECLVR 132
            VL + S+  +  
Sbjct: 120 SVLEETSLSDVAA 132


>gi|225028923|ref|ZP_03718115.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
 gi|224953762|gb|EEG34971.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
          Length = 140

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RV++  A H  +    +  IA+   IS+ +L  IL+ LVK  +++ +RG+ 
Sbjct: 2   ISTKGRYALRVMLDLAEHGNEGYIPLKDIAKRQAISDKYLESILKSLVKQKMLKGLRGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R   + ++ ++++  E +     C      DCP    C    + +K  +   D 
Sbjct: 62  GGYQLTRTPAEYSVGEILEVAEGTLAPVACLMDDAEDCPRANQCRTLPMWKKFDSLVHDF 121

Query: 122 LTQYSIECLVRNRSSIKK 139
               ++E ++ +   + +
Sbjct: 122 FYNITLEQILEDPKFLPE 139


>gi|126737794|ref|ZP_01753524.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. SK209-2-6]
 gi|126721187|gb|EBA17891.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseobacter sp. SK209-2-6]
          Length = 153

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +     +  I++   IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALSDIALQPEGTLVVLGDISKRQDISLPYLEQLFVKLRRAELVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I ++D++ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLARPASEIRVVDILSAVDETVDAMHKGAGASGGASGSRAQSLTNRLWQSLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  ++ N
Sbjct: 121 YVFLHQTRLSDVINN 135


>gi|88813311|ref|ZP_01128550.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
 gi|88789483|gb|EAR20611.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
          Length = 163

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+ ++ Y +  LM+ AIHN   P  +++I+    IS  ++ +I+  L +AG+V+   G 
Sbjct: 3   RLSTKSRYAVSALMHLAIHNQAGPVPLAEISVCQGISMSYVEQIVGRLRRAGLVQGTPGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R  + I++ +V+   E+           +    L        V  +       
Sbjct: 63  GGGYRLGRSPEHISVGEVIALMEDG------RGGRQYTSTLD-----RIVWSRLTQRIDA 111

Query: 121 VLTQYSIECLVRN---RSSIKKIFNAG 144
            L   ++   V+    R+++ + +  G
Sbjct: 112 FLRGVTLADFVQRPQIRAALARQYAGG 138


>gi|1381739|gb|AAB09668.1| HI0379 homolog [Neisseria meningitidis]
          Length = 150

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +    +  ++  A++      ++S I+E   IS  +L ++   L +AG+VE++RG
Sbjct: 1   MRLTTKGLSAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PA +I I  ++ A E+     +C    K +C     C    +         
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           D L   +++ ++      ++
Sbjct: 119 DYLGSVTLQSIIETEKQRRR 138


>gi|328886610|emb|CCA59849.1| Rrf2 family transcriptional regulator [Streptomyces venezuelae ATCC
           10712]
          Length = 160

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ +   +     +  P   +++AE   +S  +L K +Q L +AG+V +V+G+
Sbjct: 1   MKLSGGVEWALHCCVVLTAAS-RPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L RPA +IT+LDVV+A +       C         A+    C    +C +   + 
Sbjct: 60  TGGYVLTRPAVEITLLDVVQAVDGPDPAFVCTEIRQRGPLATPPEKC--TKACPIARAMG 117

Query: 113 KALNAFFDVLTQYSIECLVR 132
            A  A+   L   +I  LV 
Sbjct: 118 AAEAAWRASLAATTIADLVA 137


>gi|256420420|ref|YP_003121073.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
           DSM 2588]
 gi|256035328|gb|ACU58872.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
           DSM 2588]
          Length = 165

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L K  +Y I  + Y   +  D    I+ +A    ISE +L KI   L K G+V +  G +
Sbjct: 4   LGKGVEYAIHSMYYLVDVSRDSAMTIADMATFQNISESYLAKIFTRLQKGGLVRSALGVK 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-------VGSCGLTSVLRKA 114
           GG  L RPA++I+  D+  A E    + EC    +  C +        G C + +V  +A
Sbjct: 64  GGYVLARPAEEISFWDIAVAVEGRVSLFECH-DVRSGCVIGMTNGGQTGVCTVHAVFLEA 122

Query: 115 LNAFFDVLT-------QYSIECLVRNRS 135
                  L          ++  ++ + +
Sbjct: 123 SQKLEAFLKTRNLRWLHTTLLDIIPDET 150


>gi|219883346|ref|YP_002478507.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
 gi|219862191|gb|ACL42531.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 161

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ I   +  +   D      ++A    +S  +L K +Q L + G+V +++G 
Sbjct: 4   MKLSGGVEWAIHCCVVLS-RMDGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L RPADQI+ILDVV+A E    +  C          +    C  +  C +   + 
Sbjct: 63  AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
            A  A+ D L + +I  L    SS
Sbjct: 121 TAETAWRDSLNKITIGDLAHQVSS 144


>gi|209550103|ref|YP_002282020.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535859|gb|ACI55794.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 162

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL RP+ +I  LD+V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLARPSSEINFLDIVEAVEGKARSFTCTNIRDNNPCRPAGYCDSKPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A  A+ D L +  +  LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138


>gi|310659303|ref|YP_003937024.1| badm/rrf2 family transcriptional regulator [Clostridium sticklandii
           DSM 519]
 gi|308826081|emb|CBH22119.1| Transcriptional regulator, BadM/Rrf2 family [Clostridium
           sticklandii]
          Length = 128

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY +R++ Y A   +     S IA+   +   F+ KIL+ L  AGI +  RG 
Sbjct: 1   MKITQESDYALRIVQYLANQEESRVGASIIAKEQDVPLRFVLKILRKLNAAGITKAYRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
            GG  L +    I+  +V++A E   ++  C A+ K +C    +  C +   L       
Sbjct: 61  SGGYALTKEPGDISYKEVIEAIEGDIYLNRCLAN-KTNCTRDAADKCSIHKKLLGIQKFL 119

Query: 119 FDVLTQ 124
            + L +
Sbjct: 120 DEELGK 125


>gi|289524284|ref|ZP_06441138.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502456|gb|EFD23620.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 150

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++     +  +   A+H +    + +++E   +SE    K+ Q L KAG+V ++RG  
Sbjct: 7   QISQAASIALHGMGILALH-ERRISVRKLSEMISVSEQHAAKVFQRLTKAGLVNSLRGPS 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGV L  PA +IT+ +V +A E       C  + K  CP  GSC    +L++    F   
Sbjct: 66  GGVELAVPASKITLYEVYEAIEGKPSSDYCLIN-KQHCPF-GSCIFGGMLKRINEEFIKY 123

Query: 122 LTQYSIECLVRN 133
           L+  ++  LVR+
Sbjct: 124 LSSRTLADLVRS 135


>gi|23013034|ref|ZP_00052988.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 130

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           + IAE   IS  +L ++   L K G+V++VRG  GG  L R   Q  I D++ A +E   
Sbjct: 2   ADIAERQEISLSYLEQLFGKLRKGGLVKSVRGPGGGYLLSRIPQQTRISDIILAVDEPIQ 61

Query: 88  VAECFASHKIDCPLV-GSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
              C       C    G C    +  +  N  +  L+  S+  +   R
Sbjct: 62  TTRCSPGSPAGCHNNKGRCLTHDLWEELGNQIYLYLSSVSLADVCERR 109


>gi|260063768|ref|YP_003196848.1| BadM/Rrf2 family transcriptional regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783213|gb|EAR14386.1| transcriptional regulator, BadM/Rrf2 family protein [Robiginitalea
           biformata HTCC2501]
          Length = 135

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P +I++IA    IS+ FL  IL  L K G + + +G+ 
Sbjct: 2   LSKKTKYGLKALTYLAAQKDREPVQIAEIARHENISQKFLESILLTLRKNGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  V++  E    +  C    F     DCP   +C +  ++    ++
Sbjct: 62  GGYYLIKDPGEIRMTSVMRVLEGPIAMVPCVSLNFYEPCDDCPDESACSVHKLMLMVRDS 121

Query: 118 FFDVLTQYSIECLV 131
              V   +++   V
Sbjct: 122 ALAVYRNHTLADFV 135


>gi|68171749|ref|ZP_00545098.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998829|gb|EAM85532.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 524

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y +  ++  A        +  P R+S IA +  +SE +L +I+  L K G++
Sbjct: 1   MLITTRLRYAVMFMVKLAQEYYTLKGSTQPKRMSHIANSQSLSEGYLEQIIVKLKKQGLI 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113
            + +G  GG  L +  + IT+  ++++  E+  +  C  +H I C      C   ++   
Sbjct: 61  NSTKGPGGGYSLNKSPNSITLNLILESIGENIKITRC-KNHLIGCLSNNARCITHNLWDN 119

Query: 114 ALNAFFDVLTQYSIECLVRNR 134
             N     L   S+E ++ N 
Sbjct: 120 IGNHIKKYLNSISLEDILNNN 140


>gi|332284501|ref|YP_004416412.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428454|gb|AEC19788.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 164

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 2/132 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG  VL + A   +     S +A    + +  + KIL+ L +  +V + RG R
Sbjct: 3   RISKIIDYGTLVLTHMAGSPERMFSASDLASTLGLGQPTVSKILKLLGQHELVTSSRGAR 62

Query: 62  GGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           GG  L RPA QI++ D++ A EE  F + EC A     C +   C + S  ++       
Sbjct: 63  GGYILSRPASQISVADIIDALEEQPFGLTECTALPGA-CSVEAGCHIRSNWQRINAIVRH 121

Query: 121 VLTQYSIECLVR 132
            L + S+  ++R
Sbjct: 122 TLEEISVADMIR 133


>gi|241767055|ref|ZP_04764836.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241362402|gb|EER58363.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 142

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T R    +  +   A+  +  P  +S I+     S   L ++   L KAG+V++ RG
Sbjct: 1   MRITTRGQLAVSAMTDLAMRQHKGPVALSTISARQGTSLSHLEQLFSALKKAGLVDSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG  L R  +Q+++ D+V A E      E                +T  L  A NA  
Sbjct: 61  PGGGYALARKPEQVSVADIVVAVENQRVAEEAATRGPAQMV-----SMTGSLWTAFNAQV 115

Query: 119 FDVLTQYSIECLVRNR 134
              L   ++  LV  +
Sbjct: 116 LAYLQSVTLRDLVAEQ 131


>gi|118464782|ref|YP_880680.1| StaS protein [Mycobacterium avium 104]
 gi|118166069|gb|ABK66966.1| StaS protein [Mycobacterium avium 104]
          Length = 159

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ + +Y +R ++  A   D    +   +A+A  I   FL  IL  L    +V + RGR 
Sbjct: 1   MSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP   I+I DV++  +             +      +  LT V R    +   V
Sbjct: 61  GGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRLV 119

Query: 122 LTQYSIECLV 131
           L + ++  + 
Sbjct: 120 LEETTLADVA 129


>gi|114776741|ref|ZP_01451784.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
 gi|114552827|gb|EAU55258.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
          Length = 151

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            LTK TDYGI +L   A         +++AE   I    + KILQ L+   ++ + RG R
Sbjct: 3   RLTKLTDYGILLLTRMASSEQLRFTATELAEMTHIPMPTVSKILQMLLHENLLSSTRGAR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R A QI I DV+   E S  + EC     + C     C  ++  ++   A    
Sbjct: 63  GGYQLTRDASQINIRDVINVFEGSIALTECNIEGSV-CDQHDVCSTSNNWKRINIAVGQA 121

Query: 122 LTQYSIECL 130
           L   S+  +
Sbjct: 122 LEGISLADM 130


>gi|313898036|ref|ZP_07831575.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
 gi|312957064|gb|EFR38693.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
           HGF2]
          Length = 130

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ Y  R L+  AI+  D+P  I++I     ISE +L  I   L KAG + + RG
Sbjct: 1   MKLSTKSRYAARCLIDLAIYGKDHPLSITEIGAREEISERYLELIFATLKKAGFIASARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L RP + ITI D++   E +  +             +    +  V     +   
Sbjct: 61  SQGGYQLIRPIESITIYDIIALMETNTSIVNTQDERDP----MKRILMREVWSLIDDNLK 116

Query: 120 DVLTQYSIECL 130
             L+  +I  L
Sbjct: 117 AYLSDLTIAEL 127


>gi|299143924|ref|ZP_07037004.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518409|gb|EFI42148.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 137

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY  R+  Y A +        +IA    ISE F  +IL+ L  AGI    RG 
Sbjct: 1   MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115
            GG  L +P ++IT+ D++ A +    V +C  S         C  VG C   + L +  
Sbjct: 61  AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSECGRVSDSPCGFVG-CKFHNKLAEVQ 119

Query: 116 NAFFDVLTQYSIECLVRN 133
               D+    +++  +  
Sbjct: 120 QTIVDMFKDATLDKFMER 137


>gi|294793415|ref|ZP_06758560.1| Rrf2 family protein [Veillonella sp. 6_1_27]
 gi|294455846|gb|EFG24211.1| Rrf2 family protein [Veillonella sp. 6_1_27]
          Length = 143

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+  +      + +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKVTGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C   G C +   +    +
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
              + L   + + L + +  I
Sbjct: 119 QLINQLEAVNFKTLAQRKQLI 139


>gi|54022226|ref|YP_116468.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54013734|dbj|BAD55104.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 176

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 1   MHLTKRTDYGIRVLMYCA-------------------------IHNDYPNRISQIAEACC 35
           MH+T + DY +R L+  A                         +      +   IA A  
Sbjct: 1   MHITAKVDYAVRTLLEIARLTPAEITPATAGCVAEPGVRPDAGVAAPAKVKAETIAAAQQ 60

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
           I    L  +L  L +A +V + RG  GG RL RPA QI++ DV++A E            
Sbjct: 61  IPPKVLETVLSDLRRAELVTSRRGPDGGYRLARPAAQISVADVIRAIEGPLASVRGQRPE 120

Query: 96  KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
            +    +    L  V          VL   SIE +  +R
Sbjct: 121 DVRYEGMAE-PLQRVWIALRVNIRAVLENVSIEQIAADR 158


>gi|154250436|ref|YP_001411261.1| BadM/Rrf2 family transcriptional regulator [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154372|gb|ABS61604.1| transcriptional regulator, BadM/Rrf2 family [Fervidobacterium
           nodosum Rt17-B1]
          Length = 141

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE--ACCISELFLFKILQPLVKAGIVETVR 58
           M +T +++Y I++++  A+ N       +I +     +   F  KIL  L + GI+   R
Sbjct: 1   MAITMKSEYAIKIMILIAVENKR-VNAREIVKKCRERLPLEFAEKILADLARNGILHAYR 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG  L +  D+IT+ DVV + +      +CF           SC +  +    L   
Sbjct: 60  GRGGGYELAKKLDEITVYDVVSSVDNPSDTIKCFVDINDKATSPESCTVNKIWESVLEKM 119

Query: 119 FDVLTQYSIECLVRN 133
            ++L   +++ L  +
Sbjct: 120 QEILKSITLKELTED 134


>gi|302344421|ref|YP_003808950.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
           DSM 2075]
 gi|301641034|gb|ADK86356.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii
           DSM 2075]
          Length = 142

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H+++     +  + Y A          +IA     SE  L K++Q L KAG+V + RG  
Sbjct: 6   HISEAASLALHTMAYLAAEPGRKASTHEIARVMGASEAHLAKVMQRLGKAGLVVSQRGPG 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +  +Q+++L+V  A E       C     + C   G C +  +L K      D 
Sbjct: 66  GGFTLAKTPEQVSLLEVYAAAEGQLGEVGCLLGQPV-C--GGHCIMGELLGKLSQEIKDY 122

Query: 122 LTQYSIECLVRN 133
                +  L   
Sbjct: 123 FANTKLGDLTAE 134


>gi|295135463|ref|YP_003586139.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
           SM-A87]
 gi|294983478|gb|ADF53943.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
           SM-A87]
          Length = 135

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L + A   +  P + S+IA++  IS  FL  IL  L K+G + + +G+ 
Sbjct: 2   LSKKTKYGIKALTFIARQPERNPVQTSEIAKSENISLKFLESILLILRKSGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I +  +++  E    +  C +        DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLIKEPEDIKMTAIIRVLEGPIAMVPCVSLNYYEKCEDCPDEQTCAVHKLMIQVRDS 121

Query: 118 FFDVLTQYSIECL 130
             +VL + ++  L
Sbjct: 122 TLNVLGENTLADL 134


>gi|83942219|ref|ZP_00954680.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sulfitobacter sp. EE-36]
 gi|83846312|gb|EAP84188.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sulfitobacter sp. EE-36]
          Length = 156

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPADRLVNLGDIATRQSISLPYLEQLFVKLRRADLVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I ++D++ A +E        A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N 
Sbjct: 121 YVFLHQTRLSDVVANE 136


>gi|83955454|ref|ZP_00964085.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sulfitobacter sp. NAS-14.1]
 gi|83840098|gb|EAP79273.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sulfitobacter sp. NAS-14.1]
          Length = 156

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPADRLVNLGDIAARQSISLPYLEQLFVKLRRAELVSSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA  I ++D++ A +E        A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  +V N 
Sbjct: 121 YVFLHQTRLSDVVANE 136


>gi|15807194|ref|NP_295923.1| hypothetical protein DR_2201 [Deinococcus radiodurans R1]
 gi|6460004|gb|AAF11750.1|AE002053_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 155

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L +    + +      +I+++  I   +L +IL  L   GIV++ +G
Sbjct: 1   MRLSATDVYAFQALGFLGTQDAERWVPSEEISDSTGIHRPYLVRILAALSAKGIVKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117
             GG  L R    I++ +VV+A +       C + +    C   G C   + V  +  +A
Sbjct: 61  IGGGYALARKPRLISLCEVVRAVDGPVAPLSCISLNWHEPCAEEGRCHARATVYTRMRDA 120

Query: 118 FFDVLTQYSIECLV 131
              VL ++S+E LV
Sbjct: 121 MLGVLQEFSVEDLV 134


>gi|330467835|ref|YP_004405578.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328810806|gb|AEB44978.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
           maris AB-18-032]
          Length = 151

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R+DY +R ++  A  +    + + +A +  I   FL  IL  L +AG++ + RG 
Sbjct: 1   MYVSARSDYAVRAMLAMAQQHPALVKAAALAASQDIPYSFLQGILLDLRRAGLLHSARGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L R  ++IT+ DV++AT           +       V   GL  V +    A   
Sbjct: 61  DGGYALTRAPEEITVGDVLRATGGPLTTVRGAPAEVATYHGVAV-GLGEVWQSVHRAIER 119

Query: 121 VLTQYSIECLV 131
           V+ + S+  L+
Sbjct: 120 VVDRSSLADLL 130


>gi|294795234|ref|ZP_06760368.1| Rrf2 family protein [Veillonella sp. 3_1_44]
 gi|294454026|gb|EFG22401.1| Rrf2 family protein [Veillonella sp. 3_1_44]
          Length = 143

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+  +      + +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEHELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C   G C +   +    +
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
              + L   + + LV+    I
Sbjct: 119 QLVNQLEAVNFKNLVQREQLI 139


>gi|126728568|ref|ZP_01744383.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sagittula stellata E-37]
 gi|126710498|gb|EBA09549.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Sagittula stellata E-37]
          Length = 154

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  ++   D    +  +++   +S  +L ++   L +AG+VE+VRG
Sbjct: 1   MKLSTKGRYAMVALVDISLQGCDDLVTLGDVSKRQDLSLPYLEQLFVKLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL +    I ++D++ A +E+       A          +  L+++L ++L+A  
Sbjct: 61  PGGGYRLAKSPSDIRVVDILAAVDETVDAMHKGAGASGGLSGSKAQSLSNMLWQSLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V  
Sbjct: 121 YVFLHQTRLSDVVER 135


>gi|256827446|ref|YP_003151405.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
 gi|256583589|gb|ACU94723.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
           DSM 15641]
          Length = 167

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   ++ +  LMY   +  +    I  +AE   IS  +L K    L KA IV +  G
Sbjct: 1   MKFSISIEHALHCLMYMVDVEENKSIGIRDLAEFQGISASYLSKTFTRLAKAHIVLSSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTS 109
            +GG RL R  + I+  D+V+A E       C               +D      C ++ 
Sbjct: 61  VKGGYRLARTPEAISFWDIVEAIEGKDPFFRCQEVRFGSPVLKELGALDANDKSPCLISG 120

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           V+ +        L++ ++  L
Sbjct: 121 VMHQGEAEMKRYLSKKTLRWL 141


>gi|332284622|ref|YP_004416533.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
 gi|330428575|gb|AEC19909.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
          Length = 168

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I  +   A + +      + +AE   +S  +L K LQ L  AGIV T+ G
Sbjct: 1   MKLGDGVEQAIHSVTMLAGLSSSGVLSAAALAEFHGVSASYLLKHLQALSGAGIVHTLPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
            +GG RL R   +IT+LD+V A E S     C        +      L   C + + + +
Sbjct: 61  PKGGYRLARQPAKITLLDIVLAVEGSSPAFRCNEIRRRGPNPPSSSMLTKPCSINAAMLR 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A  A+   L + SI  ++   S++
Sbjct: 121 AEQAYRAELRRVSIADILSEVSAM 144


>gi|256827284|ref|YP_003151243.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
 gi|256583427|gb|ACU94561.1| rrf2 family protein, putative transcriptional regulator
           [Cryptobacterium curtum DSM 15641]
          Length = 170

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+R DY  R+L     H D    +++I+E   I   F   I   LV+AG V TVRG 
Sbjct: 1   MELTRRCDYACRILRSAYRHRDRFVSVAEISEEEEIPYAFARTIQHDLVQAGYVRTVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG++L     Q+T+LDV+ A +    V+ C A  +  C     C    + + A +   +
Sbjct: 61  HGGLQLAIDLSQVTVLDVLHALQGEVTVSACAADPQ-SCSKSEGCRFNQLWQVA-DKMLN 118

Query: 121 VL-TQYSIECL 130
            L    ++  +
Sbjct: 119 TLFDSVTLSDM 129


>gi|254877128|ref|ZP_05249838.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843149|gb|EET21563.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 174

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 35  MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 94

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK  E    + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 95  FGGVSISQATYNINLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 153

Query: 121 VLTQYSIECLVR 132
            L+ Y    +  
Sbjct: 154 RLSDYRFIDICN 165


>gi|241668595|ref|ZP_04756173.1| putative transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 140

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 1   MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK  E    + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 61  FGGVSISQATYNINLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119

Query: 121 VLTQYSIECLVR 132
            L+ Y    +  
Sbjct: 120 RLSDYRFIDICN 131


>gi|261597140|gb|ACX85433.1| putative transcriptional regulator [Arthrobacter sp. NyZ415]
          Length = 158

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   ++ I   +  +   D     S+ A    +S  +L K +Q L + G+V +++G 
Sbjct: 1   MKLSGGVEWAIHCCVVLS-RMDGAVPASKFAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L RPA+QI+ILDVV+A E    +  C          +   DC  +  C +   + 
Sbjct: 60  AGGYVLTRPAEQISILDVVQAVEGQQPLFVCTEIRQRGPLGTPPEDC--LTPCPIAKAMM 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A  A+ + L + +I  L   
Sbjct: 118 TAEAAWREALREVTIGDLAHQ 138


>gi|291531113|emb|CBK96698.1| rrf2 family protein (putative transcriptional regulator)
           [Eubacterium siraeum 70/3]
          Length = 135

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T  TDY IR++ + A + D       I+E   + + F  KIL+ L  AGIV + +G 
Sbjct: 1   MHITLETDYAIRIVDFMAKN-DGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
           +GG  L R   ++++ DVV+A E+++  + C   H  +C    +   C       +  + 
Sbjct: 60  KGGYELGRSPSELSLYDVVEAVEDTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118

Query: 118 FFDVLTQYSIEC 129
             D L + + + 
Sbjct: 119 VCDELKKLTFDD 130


>gi|56551012|ref|YP_161851.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761404|ref|ZP_04759492.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|56542586|gb|AAV88740.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374311|gb|EER63808.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 145

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++ T Y +  L      ++       IAE   I   +L KIL  L +AG++   RG+ G
Sbjct: 4   ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+RL RP + I++L++VKA +   +   CF      C     C + S   K        L
Sbjct: 64  GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCPMHSFWLKTRPVIVKQL 122

Query: 123 TQYSIE 128
              +++
Sbjct: 123 ENMTLD 128


>gi|325284831|ref|YP_004264293.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
 gi|324316546|gb|ADY27658.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
          Length = 146

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R  +  A   +     +Q+A    +   +L K+LQ L +AG+++ +RG+ G
Sbjct: 2   FSQTAEYALRAAVTLAEAGES-LSTAQLAGRTQVPAQYLSKVLQQLHRAGLLQALRGKYG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL RP   ITILDVV A +    +  C             C L   + +AL      L
Sbjct: 61  GYRLARPPQDITILDVVNAVDPLQRIRHCPLGRPAHAH--ALCPLHRQMDQALAQIEQTL 118

Query: 123 TQYSIECLVRNRSSIKKIFNAG 144
              ++  ++       ++ + G
Sbjct: 119 GAQTLAAMLELGQPGPELLHLG 140


>gi|218665081|ref|YP_002427593.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517294|gb|ACK77880.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 175

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K ++Y ++ L+Y A      P     I++   +   +L KILQ L K G++++ +G
Sbjct: 14  MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 73

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L   A Q+ ILD+++  E   F   C    K  C    +C + +  +       
Sbjct: 74  RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 132

Query: 120 DVLTQYSIECLVR 132
           D+L + +I  +  
Sbjct: 133 DLLGRQTIASMAE 145


>gi|257452761|ref|ZP_05618060.1| hypothetical protein F3_06819 [Fusobacterium sp. 3_1_5R]
 gi|257466870|ref|ZP_05631181.1| hypothetical protein FgonA2_05470 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918018|ref|ZP_07914258.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059302|ref|ZP_07923787.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684978|gb|EFS21813.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313691893|gb|EFS28728.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 137

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L+Y + +  D     ++I+E   I  LF  +IL+ + KAG++   +G
Sbjct: 1   MRLKNEVEYVFRILLYLSKYGKDRVISSTEISEKEQIPHLFSLRILKKMEKAGLLSIQKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    IT+   ++  E    V +C +  K      G C +   +      F 
Sbjct: 61  AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVSDPKSCSLRGGRCSVHRAMALIEKEFI 120

Query: 120 DVLTQYSIECLVRNR 134
           + L +Y+ + L    
Sbjct: 121 EHLAKYNFQDLSDEN 135


>gi|146299648|ref|YP_001194239.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154066|gb|ABQ04920.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 137

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  Y ++ L+Y A  ++ + +R  +IA+   I + FL +IL  L +   V + +G+ 
Sbjct: 2   LSHKAKYALKALLYLAEQDENHISRTVEIADGANIPKKFLEQILLDLKRGRFVSSKQGKF 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + IT+ ++ +  + +  +  C    F     DC     C L   L    + 
Sbjct: 62  GGYYLIKSKNDITLAEIHRLFDGAIALLPCASLNFYEPCSDCKTESECSLRHGLMLIRDK 121

Query: 118 FFDVLTQYSIECLVRN 133
               +   +I  LV+ 
Sbjct: 122 TLKAMEGITIASLVKK 137


>gi|311900466|dbj|BAJ32874.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 167

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 1   MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M  ++  ++ +   +       A     P   +++A    +S  +L K+LQ L +AG++ 
Sbjct: 1   MRTSEGVEWALHCCLTLVWVGGAEAAPEPVPSARLAAMFELSPTYLNKVLQRLTRAGLLT 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--------CGL 107
           +V G RGGVRL R  ++IT++DVV A E    +  C    +     VG+        CG+
Sbjct: 61  SVSGPRGGVRLARAPERITVMDVVAAVEGPDPLFACAEIRQRGASAVGAGPREFARPCGV 120

Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
              +R+A  A+   L+  ++  L
Sbjct: 121 AGAMRRAELAWRRELSAQTVADL 143


>gi|271970444|ref|YP_003344640.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270513619|gb|ACZ91897.1| transcriptional regulator protein-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 181

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ RT Y +R     A     P    +IA +  I   FL  IL  L +AG++ + RG 
Sbjct: 1   MRISARTQYALRAATELAAAPPGPVPAEKIAVSQNIPRRFLDNILLQLRRAGLIHSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA++IT+ DV+   E +   ++      +  PL     + S+LR+       
Sbjct: 61  DGGYWLARPAEEITLADVIMVVEGNPEHSQHGGYPGVAGPLAD---VWSLLREHEETL-- 115

Query: 121 VLTQYSIECLVRN 133
            LT+ ++  + ++
Sbjct: 116 -LTEITLAHITKD 127


>gi|291542545|emb|CBL15655.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus bromii
           L2-63]
          Length = 135

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y + VL+  A +  +    + +IAE   IS+ ++  IL+ LV   ++E V+G
Sbjct: 1   MLISSKGRYTLYVLVDLAKNGQNRYIPLKEIAERQNISKKYMEGILKTLVDRNLLEGVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +     ++ ++++ TE       C +     C  + SC    + ++  N   
Sbjct: 61  KGGGYKLTKEPKDYSLGEILRLTEGDLASVPCTSKTHEHCNHMESCPSHPIWQQLDNLIN 120

Query: 120 DVLTQYSIECLVRNR 134
           + L   ++  L+ N 
Sbjct: 121 NYLDSVTLANLLNNE 135


>gi|227874364|ref|ZP_03992548.1| possible transcription regulator [Oribacterium sinus F0268]
 gi|227839772|gb|EEJ50218.1| possible transcription regulator [Oribacterium sinus F0268]
          Length = 140

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  Y +++++  A HN      + +IA    ISE +L  I++ LVK  ++  +RG
Sbjct: 1   MLISTKGQYALQLMVDLAEHNGQGYIPLKEIAARQDISEKYLESIVKVLVKKELLLALRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L RP  + ++L+++ A E S          +     +G+C    V ++      
Sbjct: 61  KGGGYKLKRPVAEYSLLEILTALEGSLSPVSDLEKRRGS---LGACKTYPVWKELDRMIQ 117

Query: 120 DVLTQYSIECLV 131
           +   + ++  L 
Sbjct: 118 EYFQEKTLLELA 129


>gi|224372917|ref|YP_002607289.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
           AmH]
 gi|223589916|gb|ACM93652.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
           AmH]
          Length = 138

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T Y +  L+  +   D P  ++ +AE   + + FL K+LQ L + G V++ +G 
Sbjct: 1   MLFTKSTAYTLHALVELSKF-DKPVDVTHLAEITELPKPFLAKLLQTLSRKGFVKSFKGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
            GG  L +    I I+D+ +  E+   +    +S   DC    +  C +          F
Sbjct: 60  HGGFILSKEPKDIKIIDIFRVMEDKNSLVFYCSSDPDDCMRGRANICSIRPFFAFLEEEF 119

Query: 119 FDVLTQYSIECLVRNRSS 136
             ++  Y++E ++R +S 
Sbjct: 120 LKIVQNYTLEDVIRMKSG 137


>gi|34557102|ref|NP_906917.1| hypothetical protein WS0691 [Wolinella succinogenes DSM 1740]
 gi|34482817|emb|CAE09817.1| LIN1550 PROTEIN [Wolinella succinogenes]
          Length = 137

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  YG+  L Y  ++   P  +IS+I++   I + +L +IL  L KAG ++++RG +
Sbjct: 4   ISTKGIYGLGALYYLTLNLHKPSIQISEISQNTNIPQNYLEQILANLKKAGFLKSIRGPK 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L  P +QI + D+++A E      EC    +          L      A +    +
Sbjct: 64  GGYALAMPPEQIIVYDILEALEGGLCAIECRTDIE---------ALKLFWEDAGSKVRQI 114

Query: 122 LTQYSIECLVRNRSSIKK 139
               S++ L+R    I++
Sbjct: 115 F-SLSLKDLLRYEEMIQR 131


>gi|198284912|ref|YP_002221233.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249433|gb|ACH85026.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 162

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K ++Y ++ L+Y A      P     I++   +   +L KILQ L K G++++ +G
Sbjct: 1   MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L   A Q+ ILD+++  E   F   C    K  C    +C + +  +       
Sbjct: 61  RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 119

Query: 120 DVLTQYSIECLVR 132
           D+L + +I  +  
Sbjct: 120 DLLGRQTIASMAE 132


>gi|86742682|ref|YP_483082.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86569544|gb|ABD13353.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 177

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++  ++ +      A   D  +  + Q+A     +  +L K LQ L KAG+V +V G
Sbjct: 1   MRLSQGIEWALHCCHALAEAPDGSSLPVQQLAALHGGNPAYLAKHLQALSKAGVVVSVLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113
            RGG RL RPADQI +LDVV A E S  V  C    +              C + + +  
Sbjct: 61  PRGGYRLGRPADQIRLLDVVDAIEGSSPVFLCTEIRQRGPAALPPANYRAPCAIAAAVSS 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A +A+   L   +I  +V
Sbjct: 121 AEDAWRQALASTTIADIV 138


>gi|319795510|ref|YP_004157150.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
           EPS]
 gi|315597973|gb|ADU39039.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           EPS]
          Length = 181

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT +  + +  ++  A+H    P  ++ I+    +S  +L  +   L +  +VE+ RG
Sbjct: 1   MRLTTKGRFAVTAMIDIALHGRSGPVTLASISLRQRVSLSYLELLFAKLRRNDLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R A  I++ D+V + E+             D    G C +  +         
Sbjct: 61  PGGGYSLSRKAALISVADIVLSIEDHGNETT-RRRAGADVDDSGRCEVEELWASVNLRAV 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   S++ LV  + +
Sbjct: 120 EFLKSISLQSLVDEQKA 136


>gi|163857206|ref|YP_001631504.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260934|emb|CAP43236.1| putative transcriptional regulator [Bordetella petrii]
          Length = 160

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +++  ++ +   +  A   ++      +++A A  +   +L K LQ LVKAGI+ +  
Sbjct: 1   MKMSEGVEWALHCCLTLAWLDNDGASVPTARLAAAFELPPAYLNKCLQLLVKAGILVSTA 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVL 111
           G +GG RL R   +IT+LDVV A E       C         +       V  CG+   +
Sbjct: 61  GVKGGFRLARAPARITLLDVVTAIEGPEGAFRCAEIRQRGAGASASPREFVRPCGIAVAM 120

Query: 112 RKALNAFFDVLTQYSIECLVR 132
           R+A  A+   L   ++  L+ 
Sbjct: 121 RRAETAWRRELAAQTVADLLD 141


>gi|260753319|ref|YP_003226212.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552682|gb|ACV75628.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 145

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++ T Y +  L      ++       IAE   I   +L KIL  L +AG++   RG+ G
Sbjct: 4   ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+RL RP + I++L++VKA +   +   CF      C     C + S   K        L
Sbjct: 64  GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCQMHSFWLKTRPVIVKQL 122

Query: 123 TQYSIE 128
              +++
Sbjct: 123 ENMTLD 128


>gi|319762538|ref|YP_004126475.1| transcriptional regulator, rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|330824556|ref|YP_004387859.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117099|gb|ADU99587.1| transcriptional regulator, Rrf2 family [Alicycliphilus
           denitrificans BC]
 gi|329309928|gb|AEB84343.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
           denitrificans K601]
          Length = 180

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R    +  +   A+H+  +P  +  I+    IS  +L  I   L +AG+V +VRG
Sbjct: 1   MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLEDIFSALRRAGLVHSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RP   +++ ++V A+E+    A   A +    P         +     +   
Sbjct: 61  PGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSPSSDD-MTADLWASFHSRIL 119

Query: 120 DVLTQYSIECLVRNRS 135
           + L   ++  L+    
Sbjct: 120 EYLQSITVADLLAQHR 135


>gi|260221649|emb|CBA30424.1| HTH-type transcriptional regulator iscR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 176

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R  + I  ++  A+  +  P  +  IA    IS  +L ++   L + G+VE+ RG
Sbjct: 1   MRLSTRGRFAITAMIDLALRESGQPVPLQDIALRHRISLSYLEQVFAKLRQNGLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L    D IT+ D++ A EE    +   +    D           +     +   
Sbjct: 61  PGGGYSLGFRGDSITVADIIGAIEEKEESSRETSQSAQD-------MTRDLWAALQSTVV 113

Query: 120 DVLTQYSIECLVRNRSS 136
             +   ++  L   + +
Sbjct: 114 AHMRTITLRSLAEEQRA 130


>gi|282855397|ref|ZP_06264720.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
 gi|282586777|gb|EFB92022.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
           piscolens W5455]
          Length = 151

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  YG+R ++  +    +  P  +S +A+A  +S+ +L +++  L +AGI+ + R
Sbjct: 1   MKVSTRAHYGLRAVIAISEMARSGLPVSVSDVAKAENLSDTYLEQLVSKLRRAGILRSYR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKA 114
           G RGG  L R  D IT+ +V+KA  E     EC       C L       C  +   +  
Sbjct: 61  GARGGYELVRDPDTITVAEVLKAAGEQIIFPECTTPEG--CELAHQRGHVCASSHFWQNL 118

Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
            +    +  + ++  L+RN   
Sbjct: 119 NSMVNKIAEETTVGSLIRNYEE 140


>gi|57167906|ref|ZP_00367046.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter coli RM2228]
 gi|305432068|ref|ZP_07401235.1| rrf2 family protein [Campylobacter coli JV20]
 gi|57021028|gb|EAL57692.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter coli RM2228]
 gi|304445152|gb|EFM37798.1| rrf2 family protein [Campylobacter coli JV20]
          Length = 136

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y A H + P  +  +A    I + FL KILQ L K  ++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIA-HKENPQDVDSLALELNIPKSFLAKILQTLAKDNLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
           +GG  L +   Q +I ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGV---CPNNKEENCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++  ++ + 
Sbjct: 117 VDEFLDSLTLADIMNHN 133


>gi|260574649|ref|ZP_05842652.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
 gi|259023066|gb|EEW26359.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
          Length = 153

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+  +D    +++I+    IS  +L ++   L +A +VE VRG
Sbjct: 1   MKLSTKGRYAMVALADLALARDDDLVSLAEISRRQDISLAYLEQLFVKLRRASLVEAVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R  D I + ++++A EE+       A          +  LT+ L + L+A  
Sbjct: 61  PGGGYRLARSPDAIRVSEILEAVEETVSAMHSGAGASGGISGSRAQSLTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  ++ N 
Sbjct: 121 YVFLHQTRLSDVIGNE 136


>gi|56551318|ref|YP_162157.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241760972|ref|ZP_04759061.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|56542892|gb|AAV89046.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374591|gb|EER64052.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 135

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+  TDY + VL     H           +AE   +    + K++  L  A ++ ++R
Sbjct: 1   MRLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RPA++IT+ DVV+A E    ++ C  + +  C     CG+     +     
Sbjct: 61  GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119

Query: 119 FDVLTQYSIECLV 131
            + L   S++ L 
Sbjct: 120 KNALESISLKSLA 132


>gi|29654658|ref|NP_820350.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 493]
 gi|154705843|ref|YP_001424796.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
 gi|161829979|ref|YP_001597203.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
 gi|29541926|gb|AAO90864.1| rrf2 family protein [Coxiella burnetii RSA 493]
 gi|154355129|gb|ABS76591.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
 gi|161761846|gb|ABX77488.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
          Length = 153

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG  
Sbjct: 3   KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R    I+I D++ A +    + EC +     C     CG+    +      FDV
Sbjct: 63  GGYQLARAPQSISIADIITAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   ++  +   +  +K+I
Sbjct: 122 LDSLNLADM--QKPLLKRI 138


>gi|126726563|ref|ZP_01742404.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126704426|gb|EBA03518.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 180

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A I       +S I+    IS  +L ++   L +AG+VE+VRG
Sbjct: 28  MKLSTKGRYAMVALADLACITAPRLTSLSDISRRQDISLPYLEQLFVKLRRAGLVESVRG 87

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL +   +I + D++ A +E+                  +  + + L + L+A  
Sbjct: 88  PGGGYRLAKAPAEIRVSDILGAVDETVSAMHQGGGASGGSSGSKAQSMANRLWENLSANV 147

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  ++ N 
Sbjct: 148 YVFLHQTRLSDVIENE 163


>gi|167750933|ref|ZP_02423060.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
 gi|167656112|gb|EDS00242.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
 gi|291557420|emb|CBL34537.1| rrf2 family protein (putative transcriptional regulator)
           [Eubacterium siraeum V10Sc8a]
          Length = 135

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T  TDY IR++ +  + ND       I+E   + + F  KIL+ L  AGIV + +G 
Sbjct: 1   MHITLETDYAIRIVDFM-VKNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
           +GG  L R   ++++ DVV+A E ++  + C   H  +C    +   C       +  + 
Sbjct: 60  KGGYELGRSPSELSLYDVVEAVEGTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118

Query: 118 FFDVLTQYSIEC 129
             D L + + + 
Sbjct: 119 VCDELKKLTFDD 130


>gi|86609933|ref|YP_478695.1| transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558475|gb|ABD03432.1| transcriptional regulator, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 151

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y I+ L+  A + +     +  IA+   I   +L K+L  L +AG+V + RG
Sbjct: 1   MRLTTRATYSIKALLDLAMLGSGQMASVRAIAQRQGIPAPYLEKLLIELRQAGLVCSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            +GG RL R   +I I  ++ A  ES   + E   +  +           ++ ++     
Sbjct: 61  AQGGYRLARAPRRIPISAILAAVGESLDPLVESSDATAVYSAERLDWVTEALWKRIARQV 120

Query: 119 FDVLTQYSIECL 130
             VL + ++E L
Sbjct: 121 QQVLEETTLEDL 132


>gi|329114662|ref|ZP_08243421.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
           DM001]
 gi|326696142|gb|EGE47824.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
           DM001]
          Length = 160

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++  DY I +L+      +       +A    + E  + K+L+ L   G V + RG +
Sbjct: 9   KLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGAK 67

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL R    I++  V+ A +    +  C    +  C    SCGL         A    
Sbjct: 68  GGYRLARHLADISVASVITAVDGKIALTACVDGGE--CDTGVSCGLCGSWDTINQAIRTT 125

Query: 122 LTQYSIECL 130
           L   S+E +
Sbjct: 126 LEGISLESM 134


>gi|282849988|ref|ZP_06259370.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
 gi|282580177|gb|EFB85578.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
          Length = 143

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+  +      + +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C   G C +   +    +
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
              + L   + + L +    I
Sbjct: 119 QLINQLEAVNFKTLAQREQLI 139


>gi|327191462|gb|EGE58484.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 162

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL R + +I  LD+V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLARASSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
           A  A+ + L +  +  LV + S 
Sbjct: 121 ADEAWRETLRRVRLSDLVDSLSQ 143


>gi|171911244|ref|ZP_02926714.1| hypothetical protein VspiD_08720 [Verrucomicrobium spinosum DSM
           4136]
          Length = 137

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++K+ +Y +R ++  +         I  +AE   I   FL +IL  L K GI+ + RG
Sbjct: 1   MKISKKAEYALRAVLAMSRSATGTIFSIQSLAEEERIPLKFLEQILLILRKGGIMHSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L RPA +IT+ ++++  +    +     S           GLTS  ++      
Sbjct: 61  AGGGYQLVRPASRITVGEILELVDGPIELLPDGNSLSP--------GLTSAFQELQGEMQ 112

Query: 120 DVLTQYSIECLVRNRS 135
             LT+ ++  +++   
Sbjct: 113 AWLTKMTLADVMQREQ 128


>gi|291037439|ref|ZP_06568403.1| transcriptional regulator BadM/Rrf2 [Gluconacetobacter xylinus NBRC
           3288]
          Length = 136

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ RTDY  RVL++ A + D    +  I E   IS   L K++Q L  AGIV+  RG 
Sbjct: 1   MRLSLRTDYAFRVLIHLACNPDSRVTVRNITELHGISHNHLVKVVQHLCHAGIVQGTRGG 60

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+RL   A  I +  +++  E E      C +S    C L  +C    ++ +A++AF 
Sbjct: 61  TGGIRLAVSARNINVGHIMRLMETEKESPGACHSSGNNQCILGNACQFRHLIVQAVDAFM 120

Query: 120 DVLTQYSIECL 130
                 S+  L
Sbjct: 121 AFSDGMSLLDL 131


>gi|317057079|ref|YP_004105546.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315449348|gb|ADU22912.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 149

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R +YGI  L   AI+         S I+E   IS+ +L +I+  L + G V+  +
Sbjct: 1   MKISTRVEYGIIALADIAINGANGKTVSSSDISERQDISQKYLEQIIISLRQGGFVKGQK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           G RGG  L RPA++I + +++ A + S      E    +        +C L     K  +
Sbjct: 61  GSRGGYMLSRPAEKIYLSEILNALDNSILADAYEESEENTAGMRNSVNCCL---WDKINS 117

Query: 117 AFFDVLTQYSIECLVRNRSS 136
                  Q ++  L+     
Sbjct: 118 YMRSFTEQMTLADLIAGHKE 137


>gi|241205480|ref|YP_002976576.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859370|gb|ACS57037.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 162

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +VET  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL +    I  L++V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A  A+ D L +  +  LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138


>gi|297624973|ref|YP_003706407.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
           DSM 17093]
 gi|297166153|gb|ADI15864.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
           DSM 17093]
          Length = 165

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L +              I+EA  ++  +L +IL  L   GI+ + +G
Sbjct: 11  MRLSTTDIYAFQALGFLGTQPPGRWVGSDTISEATGVARPYLVRILAQLTAKGIIVSKKG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117
             GG  L R A  I + DV++A +       C + +  + C     C   S V  +  +A
Sbjct: 71  AGGGYALVREAHLINLRDVMRAIDGPVAPLSCVSLNWHVPCVEEARCHARSAVWERVRDA 130

Query: 118 FFDVLTQYSIECLVRN 133
               L++ S+  L  +
Sbjct: 131 LLTALSEVSVADLAAD 146


>gi|269797540|ref|YP_003311440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Veillonella parvula DSM 2008]
 gi|269094169|gb|ACZ24160.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
           DSM 2008]
          Length = 143

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A+  +      + +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R   +I++LDV++A E   ++  C     S    C   G C +   +    +
Sbjct: 61  VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCK--GHCAINEAMGVIQH 118

Query: 117 AFFDVLTQYSIECLVRNRSSI 137
              + L   + + L +    I
Sbjct: 119 QLINQLEAVNFKTLAQREQLI 139


>gi|298248163|ref|ZP_06971968.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550822|gb|EFH84688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 135

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ T+Y +  +MY  A+       + ++AE   +S  +L KIL  LVKAGI+E+  G
Sbjct: 1   MKYSQATNYALHTMMYFVALPVGSTIGVQRLAELQKLSPTYLSKILTKLVKAGIIESTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R    ++ L+V+ A E +  +      H         C +  V+ +A     
Sbjct: 61  VNGGYRLTRNKADLSFLEVIHAIEGTATLFHDGLHHHE-------CLIQDVMTQAEQQME 113

Query: 120 DVLTQYSIECLV 131
           D L +  +  LV
Sbjct: 114 DYLKERKLIELV 125


>gi|307319940|ref|ZP_07599363.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306894480|gb|EFN25243.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
          Length = 142

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 11  IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           ++ ++    +       I++IA    + + FL  I+  L  AG + + +G  GG  L RP
Sbjct: 1   MKAMVDLVQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPGGGYALARP 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDVLTQY 125
           A +I +  V++  +       C +        DC    +C +   +    +A  D+L   
Sbjct: 61  ASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDAVADILDNM 120

Query: 126 SIECLVRNRSS 136
           ++     +   
Sbjct: 121 TLAQFAASERE 131


>gi|154483669|ref|ZP_02026117.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
           27560]
 gi|149735579|gb|EDM51465.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
           27560]
          Length = 147

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+L+K++ YG+  L+  +IH+      +  IAE   IS  +L  I   L +AGI+++++G
Sbjct: 1   MNLSKKSRYGLTALIDLSIHSTKGHVSLISIAERNGISPQYLEHIFASLRRAGIIKSIKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L     +IT+  +++A + ++ +     S   + P +       ++ K  +   
Sbjct: 61  AQGGYLLGDSPSRITVASIIEALDGAYRIEREEVSESEN-PRIALTIQNLIIDKINDRLD 119

Query: 120 DVLTQYSIECL 130
           +VL   ++  L
Sbjct: 120 EVLENTTLADL 130


>gi|239834897|ref|ZP_04683225.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
 gi|239822960|gb|EEQ94529.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
           intermedium LMG 3301]
          Length = 156

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 1   MH-LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MH LTK+  YG++ L + A         +++IA    IS+ FL  IL  L   GI+ + +
Sbjct: 1   MHMLTKKGKYGLKALAHLAALAPGESAFVAEIAARNNISKKFLDAILLELRNDGILRSKK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114
           G  GG  L +PA +ITI  VV+  +       C +        DC    +C +   +   
Sbjct: 61  GPGGGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCDDCEDHRACQVRRSMLLV 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A   VL   ++E   RN
Sbjct: 121 REAIAGVLDTMTLEQFARN 139


>gi|325676175|ref|ZP_08155855.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
           33707]
 gi|325552959|gb|EGD22641.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
           33707]
          Length = 148

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R++M  A             +AE   +S     K++  L + G+V T R
Sbjct: 1   MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  + +  E    V  C       CPL   C L S LR A +AF
Sbjct: 61  GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDK--PCPLRRGCRLRSSLRVAQDAF 118

Query: 119 FDVLTQYSIECLVR 132
           +  L   ++  L  
Sbjct: 119 YTALDAMTVRDLAA 132


>gi|149202631|ref|ZP_01879603.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. TM1035]
 gi|149143913|gb|EDM31947.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. TM1035]
          Length = 153

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  A+        +  I+    IS  +L ++   L +A +V++VRG
Sbjct: 1   MKLSTKGRYAMVALVDIALQPAGSVVTLGDISRRQDISLPYLEQLFVKLRRADLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I + D++ A +E+       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYRLMRPASEIRVTDILAAVDETIDALHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +  N
Sbjct: 121 YVFLHQTRLSDVAGN 135


>gi|262196471|ref|YP_003267680.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262079818|gb|ACY15787.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 273

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T+  D   R     A        +  +A A  I E  + K+L+ LV+AG+V +VRG  GG
Sbjct: 77  TRAGDVAHR-----AGEGGTHQSVRALAAATGIPEPTVRKVLKTLVRAGVVGSVRGTHGG 131

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFFDVL 122
             L RPA  I++ +V  A E    V EC +      C L   C +    ++      D L
Sbjct: 132 YALARPASAISVAEVATAFEGPIAVTECASEETVGTCGLEDRCTVKGPWQRISEVIRDAL 191

Query: 123 TQYSIECL 130
              S+  +
Sbjct: 192 EGLSLAQM 199


>gi|257464248|ref|ZP_05628627.1| hypothetical protein FuD12_10461 [Fusobacterium sp. D12]
 gi|317061765|ref|ZP_07926250.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313687441|gb|EFS24276.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 136

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L+Y + +  +     ++I+E   I  LF  +IL+ + KAG+V   +G
Sbjct: 1   MRLKNEVEYVFRILLYLSRYGKERIISSTEISEKEQIPHLFSLRILKKMEKAGLVSIQKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L +    IT+   ++  E    V +C    K      G C +   +      F 
Sbjct: 61  AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVRDPKSCSLRSGRCSVHRAMAVIEKEFI 120

Query: 120 DVLTQYSIECLVRNR 134
           + L +Y+ + L    
Sbjct: 121 EHLAKYNFQDLSDEN 135


>gi|218291270|ref|ZP_03495246.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238818|gb|EED06030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 125

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 14  LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           L+  A   +D P  +  IAE   +SE +L +++ PL   G V ++RG  GG  L R   +
Sbjct: 3   LVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRGAYGGYVLARHPRE 62

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I I DV+ A E    + +               GL  +  +   A  DVL+  +++ LV 
Sbjct: 63  IVIEDVLLALEGPITIVDEEIDD----------GLQVLWDRLREAIHDVLSSMTLQDLVE 112

Query: 133 NRSS 136
            R  
Sbjct: 113 LRQG 116


>gi|116252972|ref|YP_768810.1| Rrf2 family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257620|emb|CAK08717.1| putative Rrf2 family transcriptional regulator protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 162

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +VET  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL +    I  L++V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A  A+ D L +  +  LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138


>gi|121594035|ref|YP_985931.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606115|gb|ABM41855.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
          Length = 187

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 2/137 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R    +  +   A+ +   P  +  I+    IS  +L  I   L +AG+V ++RG
Sbjct: 1   MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RP  ++++ D+V A+E+    A+   +        G      +     +   
Sbjct: 61  PGGGYTLTRPPQELSVADIVIASEKYMGGADDKGTDTGTASAPGE-MTAELWASFHSRVM 119

Query: 120 DVLTQYSIECLVRNRSS 136
           + L   ++  L+  R +
Sbjct: 120 EYLQSITVADLLTQREA 136


>gi|212212264|ref|YP_002303200.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
 gi|212010674|gb|ACJ18055.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
          Length = 153

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++  DY   V+   A         +QIA    +S   + K+L+ L +  +V + RG  
Sbjct: 3   KISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGVN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R    I+I D++ A +    + EC +     C     CG+    +      FDV
Sbjct: 63  GGYQLARAPQSISIADIIAAVDGKPAMTEC-SRDANRCEHNAVCGVRENWQLINTLIFDV 121

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L   ++  +   +  +K+I
Sbjct: 122 LDSLNLADM--QKPLLKRI 138


>gi|260753062|ref|YP_003225955.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552425|gb|ACV75371.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 135

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           MHL+  TDY + VL     H           +AE   +    + K++  L  A ++ ++R
Sbjct: 1   MHLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L RPA++IT+ DVV+A E    ++ C  + +  C     CG+     +     
Sbjct: 61  GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119

Query: 119 FDVLTQYSIECLV 131
            + L   S++ L 
Sbjct: 120 KNALESISLKSLA 132


>gi|90419967|ref|ZP_01227876.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336008|gb|EAS49756.1| putative transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 139

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++R  Y IR L   A     P   + IA    I   FL  IL  L +AG++ ++RG RG
Sbjct: 2   ISQRARYAIRSLRNIAPRA-APVSAAVIAVEEQIPRKFLEAILAELKQAGLLVSLRGARG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
           G RL RP +QI+  DV++  +    +A C +        DC  V SC   + L    +A 
Sbjct: 61  GYRLARPGEQISFADVLRVVDGPLALAPCASRTAYRRCEDCRDVESCETRTALLAVRDAT 120

Query: 119 FDVLTQ 124
             +L  
Sbjct: 121 AAILEG 126


>gi|167628038|ref|YP_001678538.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598039|gb|ABZ88037.1| putative transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 140

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT  TDY +R+L+    +     +   + E   I      KI+  L     +E+ +GR
Sbjct: 1   MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV + +    I +  +VK  E    + ECF   K  CPL+ +C L  +L +A N F  
Sbjct: 61  FGGVSISQATYNIKLSTIVKELE-PMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119

Query: 121 VLTQYSIECLVR 132
            L  Y    +  
Sbjct: 120 RLNDYRFIDICN 131


>gi|153003770|ref|YP_001378095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027343|gb|ABS25111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 155

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K TDY I +L + A  +       ++A    +    + K+ + L KAG+V + RGR 
Sbjct: 3   RMSKLTDYAIVLLAHLA-RSGRTLAAQELAARSGVPLPTVSKLCKELSKAGLVVSHRGRH 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA+ I++ ++V+A E    + +C +  K+ C +  +C   +       A    
Sbjct: 62  GGYGLARPAELISVAEIVEALEGPIALTDCTSPAKVACGIEATCPAKASFDPVTRAIQGA 121

Query: 122 L 122
           L
Sbjct: 122 L 122


>gi|159184340|ref|NP_353521.2| hypothetical protein Atu0493 [Agrobacterium tumefaciens str. C58]
 gi|159139656|gb|AAK86306.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 167

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I  +   A +        + +AE   +S  +L K LQ L  AGIV TV G
Sbjct: 1   MKLGDGVEQAIHSVSMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQSLSNAGIVTTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            +GG RL R  D+IT+LD+V A E       C     +   PL G      CG+ + + K
Sbjct: 61  PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A   +   L + SI  ++ +
Sbjct: 121 AEKVYRAELAKTSIADILGD 140


>gi|303228847|ref|ZP_07315660.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230326|ref|ZP_07317089.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515012|gb|EFL56991.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516467|gb|EFL58396.1| transcriptional regulator, Rrf2 family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 150

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + TDY  R++++ A + +        +AE   I E FL KI++ L+ AGI+++ RG
Sbjct: 1   MKLNQATDYAFRMILHMAMLPSGQKVTGGVLAEQEMIPERFLLKIMRSLIAAGIMKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
             GG  L R    I++LDV++A E   ++  C       C     G C +   +      
Sbjct: 61  VDGGFALNREPKDISMLDVIRAVEGDTYLQRCLYDVG-SCSKACMGQCAVNEAMSVVQAE 119

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
               +   + + L      I +  N
Sbjct: 120 LVRQMESVTFDKLAVREKEILETMN 144


>gi|300856563|ref|YP_003781547.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436678|gb|ADK16445.1| predicted transcription regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 137

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DYG RV++Y + +          IA+   +   FL K+L+ L +AGIV++ RG
Sbjct: 1   MKITQESDYGFRVVLYLSNLGYGKKIEAKTIAKDQNVPLRFLLKLLRKLTQAGIVKSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
             GG  L R  + IT+ ++++A +   ++  C       +    G CG+ + L K     
Sbjct: 61  VNGGYALNRMPEDITLRNIIEAIDGPIYLNRCLYDTEHCNAHKKGHCGVHNALSKVQGTL 120

Query: 119 FDVLTQYSIECLVRNR 134
            + L   + + ++ ++
Sbjct: 121 INELESINFKDIMEDK 136


>gi|312881138|ref|ZP_07740938.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784429|gb|EFQ24827.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 152

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H ++     +  ++  A        +  +AEA   SE  L K++Q L KAGI+   RG R
Sbjct: 6   HFSEAASLAVHGVLLLAASGGEHRTVRSLAEAVGASEAHLAKVVQRLGKAGILSCTRGPR 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGV L RPA +IT+L+V +A E       C       CP  G+C    +L +      D 
Sbjct: 66  GGVFLARPAGEITLLEVYEAVEGPLDRGGCVLGRSA-CPF-GACLFGGLLERVSGEVRDF 123

Query: 122 LTQYSIECLVRNR 134
           L   ++E   ++R
Sbjct: 124 LAATTLEDFWKSR 136


>gi|283778130|ref|YP_003368885.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283436583|gb|ADB15025.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 142

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +T+Y    ++  A  ++   P RI  IA+   I   FL +IL  L  AG+V++VR
Sbjct: 1   MIVSAKTEYACIAMLELAARDERSEPVRIKDIADRHGIPSRFLVQILLQLKTAGLVQSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG +L  P  +IT+  V+ A +         +S   D P      L    +      
Sbjct: 61  GASGGYQLALPPREITLGTVMSAVDAQSARV--VSSLTSDSPTTRV--LHDRWQLVAEKQ 116

Query: 119 FDVLTQYSIECLV 131
            ++L + ++  LV
Sbjct: 117 RELLEEVTLADLV 129


>gi|291518758|emb|CBK73979.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
           fibrisolvens 16/4]
          Length = 133

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + +  Y +RV++  +  + +    +  IAE   IS+ +L  I++ LV  G V+ V G+ 
Sbjct: 2   FSTKGRYALRVMIDLSQQNPEEYIPLKDIAERQDISKKYLEIIVKELVHGGFVKGVSGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R  ++ ++ ++++  E S     C A   ++CP  G C    +  +      D 
Sbjct: 62  GGYQLTRKPEEYSVGEIIELMEGSLSPVACLADENMECPREGICKTLPMWTEFYMLERDF 121

Query: 122 LTQYSIECLVRN 133
                +  LV +
Sbjct: 122 FYGKKLSDLVNS 133


>gi|170761689|ref|YP_001786255.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408678|gb|ACA57089.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 126

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  TK T+Y + ++ Y   H+D     +  +A    IS  +L KIL  LVKA I+++  G
Sbjct: 1   MKYTKATNYALHIVAYIIKHDDGKHISLYPLANYFNISPSYLSKILTKLVKADIIQSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  + I++LDV+KA E +  +  C  + K        C + + + +A +   
Sbjct: 61  VNGGYILYKNKEDISLLDVIKAIEGNSSIFTCEMNEK------SECKIQNAISEAEHIME 114

Query: 120 DVLTQYSIECLV 131
             L    I  ++
Sbjct: 115 TYLKNKKIFEII 126


>gi|308371930|ref|ZP_07426693.2| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373100|ref|ZP_07431000.2| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374277|ref|ZP_07435406.2| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
           SUMu006]
 gi|308376685|ref|ZP_07439652.2| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378898|ref|ZP_07484226.2| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
           SUMu010]
 gi|308335059|gb|EFP23910.1| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338867|gb|EFP27718.1| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342552|gb|EFP31403.1| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
           SUMu006]
 gi|308350358|gb|EFP39209.1| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
           SUMu008]
 gi|308358935|gb|EFP47786.1| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
           SUMu010]
          Length = 159

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ + +Y +R ++  A   +    +   +A A  I   FL  IL  L    +V + RGR 
Sbjct: 1   MSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RP  +I+I DV++  +             +      +  LT V R    +   V
Sbjct: 61  GGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMRSV 119

Query: 122 LTQYSIECLV 131
           L + ++  + 
Sbjct: 120 LEETTLADVA 129


>gi|154503497|ref|ZP_02040557.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
 gi|153795597|gb|EDN78017.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR+++Y A          +++E   IS+ F++KI++ L  AGI+    G 
Sbjct: 1   MQLNIATDYAIRIVIYMAKQR-RIVSSRELSENLKISQPFIYKIMRKLNHAGILAINTGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
            GG  L +  +QI + +++   E +     C    +   C    +C L     K    F 
Sbjct: 60  HGGYILQKETEQINLFEIMDTMERTMKWNRCLEDDRYCSCFATEACRLRETYLKMQEHFE 119

Query: 120 DVLTQYSIECLVR 132
           + L + +I+ +++
Sbjct: 120 NELKETTIQKIIK 132


>gi|153011671|ref|YP_001372885.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151563559|gb|ABS17056.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 154

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ L + A         ++ IA    IS+ FL  IL  L   GI+ + +G  
Sbjct: 2   LTKKGKYGLKALAHLAALEPGESAFVADIATQNNISKKFLDAILLELRNDGILRSKKGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +PA +ITI  VV+  +       C +        DC    +C +   +     A
Sbjct: 62  GGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCNDCVDHRACQVRRSMLLVREA 121

Query: 118 FFDVLTQYSIECLVRN 133
              VL + ++E   RN
Sbjct: 122 IAGVLDRMTLEQFTRN 137


>gi|307324656|ref|ZP_07603862.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889538|gb|EFN20518.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 158

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++   ++ +   +      + P   +++AE   +S  +L K LQ L +AG+V +V+G+ G
Sbjct: 1   MSGGVEWALHCCVVL-TSVEEPVPATKLAEFHDVSASYLAKQLQALSRAGLVRSVQGKAG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLRKA 114
           G  L R    IT+LDVV+A +       C         A+    C     C +   +  A
Sbjct: 60  GYILTREPASITLLDVVEAVDGPAAAFTCTEIRQRGPLATPAESC--TTPCPIARAMSGA 117

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A+   L   SI  L ++
Sbjct: 118 DAAWRAALRAVSIADLAQD 136


>gi|289706858|ref|ZP_06503199.1| Rrf2 family protein (putative transcriptional regulator)
           [Micrococcus luteus SK58]
 gi|289556408|gb|EFD49758.1| Rrf2 family protein (putative transcriptional regulator)
           [Micrococcus luteus SK58]
          Length = 152

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD  +RVLM  A          QIA+   +    + K +  L + G +E +RGR
Sbjct: 1   MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +        + ++V++      V +C      + CP  G C L   L +A  AF 
Sbjct: 61  HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL 120

Query: 120 DVLTQYSIECLV 131
             L    I  LV
Sbjct: 121 AELDTVRIRDLV 132


>gi|269956765|ref|YP_003326554.1| BadM/Rrf2 family transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305446|gb|ACZ30996.1| transcriptional regulator, BadM/Rrf2 family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 168

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 5/145 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +T + DY +R+ +  A         +  ++A A  I   ++  IL  L + G+VET R
Sbjct: 1   MRITAKIDYAVRLCVELAARYDGGGYAKSDELATAQQIPANYVLGILNSLKQTGLVETRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG RL     QI + DV++A +             +  P   +  +  V      A 
Sbjct: 61  GADGGARLASDPAQIAVADVIRAIDGPLASVGGRNVEDVSYPGSSA-PVRDVWVALRCAM 119

Query: 119 FDVLTQYSIECLVRN--RSSIKKIF 141
             VL   ++  ++     + ++++ 
Sbjct: 120 RSVLEVVTLADVLAGAMPAPVQELL 144


>gi|268679988|ref|YP_003304419.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618019|gb|ACZ12384.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 135

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+  A   + P  +  ++    +S+ FL KILQ L K  I+ + +G 
Sbjct: 1   MLLTKASEYALLSLIIIA-QKNTPQDVDTLSTQLGLSKSFLAKILQSLAKEEILSSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG  L +  ++IT+  VV+  E+   V  EC +     CP     +C +  VL K  + 
Sbjct: 60  HGGFMLAKKPEEITLKMVVECAEKKQTVVFEC-SPSTQKCPGGKGDNCRVWPVLNKLQSK 118

Query: 118 FFDVLTQYSIECLVRNR 134
               L   ++  ++   
Sbjct: 119 IDLFLDTMTLHDIINEN 135


>gi|288817531|ref|YP_003431878.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
           thermophilus TK-6]
 gi|288786930|dbj|BAI68677.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
           thermophilus TK-6]
 gi|308751134|gb|ADO44617.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
           thermophilus TK-6]
          Length = 151

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D   ++ +IAEA  I + FL KI   L +  ++ + +G  GG  L  P +QITI+DV+
Sbjct: 20  NRDRLVKVEEIAEAQKIPKPFLSKIFHKLARERVLRSYKGPTGGFALAVPPEQITIMDVI 79

Query: 80  KATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           +  +E + +  C A     C    V  C +     +  +   D L   +I  L  
Sbjct: 80  RYLDEDYKLDYC-ALRPGRCEEWQVSPCRVHEKWTRLRDTIMDYLNNTTIAELAE 133


>gi|262201958|ref|YP_003273166.1| hypothetical protein Gbro_2020 [Gordonia bronchialis DSM 43247]
 gi|262085305|gb|ACY21273.1| protein of unknown function UPF0074 [Gordonia bronchialis DSM
           43247]
          Length = 177

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
           M LT+ TD G+RV+M                       +A    +    + K++  L + 
Sbjct: 13  MQLTRFTDIGLRVVMRLVAAEAAARETASGPPTLTTKDLAAELAVPYTHVAKVVSRLSEL 72

Query: 52  GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G+V + RGR GG+ +        +  + +  E    V +C +     CPL  +C L   L
Sbjct: 73  GVVHSRRGRSGGLMITDLGRAARVGWLAETLEGPGEVVDCNSPE--PCPLRAACHLRGAL 130

Query: 112 RKALNAFFDVLTQYSIECLVRNRSS 136
            +A NAFF  L +++I  LV   + 
Sbjct: 131 AQARNAFFRSLDEHAIVDLVAQPTG 155


>gi|160872032|ref|ZP_02062164.1| FeS assembly SUF system regulator [Rickettsiella grylli]
 gi|159120831|gb|EDP46169.1| FeS assembly SUF system regulator [Rickettsiella grylli]
          Length = 157

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY + ++ Y + H        +IAE   I+     K+L+ L   G++   RG R
Sbjct: 3   RLSKLTDYAVVIMAYLSQHPGLAINAKKIAERTGIALPTTSKLLKHLTHRGLLHANRGIR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L  PA  I++  +++  E    + EC    +  C     C +    R+        
Sbjct: 63  GGYLLAYPAADISLGTLIQTLEGPIALTECSHRTRT-CRFAQQCTIRDNWRRISAFIQMT 121

Query: 122 LTQYSIECLVR 132
               S+  L++
Sbjct: 122 FMHISLADLIQ 132


>gi|56751534|ref|YP_172235.1| hypothetical protein syc1525_d [Synechococcus elongatus PCC 6301]
 gi|81301394|ref|YP_401602.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686493|dbj|BAD79715.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170275|gb|ABB58615.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
           elongatus PCC 7942]
          Length = 171

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R  Y ++ L+   +   D P  +  IA+   IS   L K+L  L KAG+V   +G
Sbjct: 26  MKLTVRAHYSLKALIDLCLQPEDEPVSMRAIAQRQNISPTLLEKLLVELCKAGLVTATKG 85

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           RRGG +L RPA +I++ D++ A  E            +           ++ ++    + 
Sbjct: 86  RRGGYQLARPAAKISLADILAAVGELSD----RDRQPLAPEEAADWVSRAIWQRLDAQWQ 141

Query: 120 DVLTQYSIECL 130
             L Q S+  L
Sbjct: 142 ATLRQVSLADL 152


>gi|89902226|ref|YP_524697.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346963|gb|ABD71166.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
           ferrireducens T118]
          Length = 182

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  + +  ++  A+     P  +S IA    IS  +L ++   L + G+V + RG
Sbjct: 1   MRLSTKGRFAVTAMIDVALREKLGPVPLSDIAVRQQISLSYLEQMFSKLRQHGLVASTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG  L + AD+IT+ D++ A E+       +     K      G      +       
Sbjct: 61  PGGGYALGQQADRITVADIIGAVEDETDRSTKDAVRHAKTAASSAGKDMAQDLWDSLNTK 120

Query: 118 FFDVLTQYSIECLV 131
             D +   ++  L 
Sbjct: 121 MMDYMQSVTLRSLA 134


>gi|305664587|ref|YP_003860874.1| BadM/Rrf2 family transcriptional regulator [Maribacter sp.
           HTCC2170]
 gi|88708604|gb|EAR00840.1| transcriptional regulator, BadM/Rrf2 family protein [Maribacter sp.
           HTCC2170]
          Length = 136

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L + A   +  P +I++IA    IS+ FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGLKALTFLASQENRQPVQIAEIARNENISQKFLESILLSLRKTGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I + DV++  E    +  C    F     DCP   +C +  ++ +  ++
Sbjct: 62  GGYYLIKEPKDILMTDVMRILEGPIAMVPCVSLNFYERCEDCPDEKTCSVHKLMLQVRDS 121

Query: 118 FFDVLTQYSIECLVR 132
             ++    ++  L++
Sbjct: 122 ALEIYRNNTLADLIK 136


>gi|222823943|ref|YP_002575517.1| BadM/Rrf2 family transcriptional regulator [Campylobacter lari
           RM2100]
 gi|222539165|gb|ACM64266.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter lari
           RM2100]
          Length = 134

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L++ A  +  P  +  ++    I + FL KILQ L K  ++++ +G 
Sbjct: 1   MLFTKASEYALLSLIHIA-KSKEPQDVDTMSNVLDIPKSFLAKILQALAKDALLKSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
           +GG  L +   + T+ +++ + E +S  V EC       CP     +C +  +L K  N 
Sbjct: 60  KGGFVLIKQPSEYTLKEIINSVEKKSINVFEC---SNGICPSQKEDNCKIMPILVKLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             D L   ++E +++N 
Sbjct: 117 IDDFLVSITLEDIIQNN 133


>gi|119961490|ref|YP_946631.1| transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119948349|gb|ABM07260.1| putative transcriptional regulator [Arthrobacter aurescens TC1]
          Length = 156

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R +M  A   +        +A+A       + K +  L   G ++  RG
Sbjct: 1   MKINAFADVSLRAIMVLAAAPEGTLLTTQAVADAVGTPYNHVSKAMVRLRALGFIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL     + T+ ++++  +     AEC +  K  CPL+  CGL   + KA  AF+
Sbjct: 61  RLGGSRLNEAGRKATVGELLRHLDSRQDPAECQSPTKA-CPLINECGLRHAMNKAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSI 137
             L    I  L   R  I
Sbjct: 120 RELDTVVISSLPHARQMI 137


>gi|110679918|ref|YP_682925.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
 gi|109456034|gb|ABG32239.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
           114]
          Length = 157

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   D    +  IA    IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALADIAMQPQDKLVSLGDIATRQAISLAYLEQLFVKLRRAELVASVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL R    I +++++ A +E+       A          +  LT+ L ++L+A  
Sbjct: 61  PGGGYRLTRSPSDIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHV 120

Query: 119 FDVLTQYSIECLVRNR 134
           +  L Q  +  ++ N 
Sbjct: 121 YVFLHQTRLSDVIANE 136


>gi|633731|gb|AAA61511.1| ORF3; 14-nt overlap with flhA [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 136

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+Y +   + P  +  +A    I + FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
           + G  L +   Q TI ++V + E +   V EC       CP     +C L  +L    N 
Sbjct: 60  KVGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGG---TCPNNKEENCTLMPMLVNLQNK 116

Query: 118 FFDVLTQYSIECLVRNR 134
             + L   ++E +++N 
Sbjct: 117 VDEFLDSITLEDIMKNN 133


>gi|315638496|ref|ZP_07893673.1| rrf2 family protein [Campylobacter upsaliensis JV21]
 gi|315481487|gb|EFU72114.1| rrf2 family protein [Campylobacter upsaliensis JV21]
          Length = 133

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y +  +  P  +  +A    I + FL KILQ L + G++ + +G 
Sbjct: 1   MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
           +GG  L R     T+ +++ + E +   V EC       CP    +C L SVL       
Sbjct: 60  KGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++E +++N 
Sbjct: 117 DNFLDSITLEDIIKNN 132


>gi|284042783|ref|YP_003393123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Conexibacter woesei DSM 14684]
 gi|283947004|gb|ADB49748.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
           DSM 14684]
          Length = 153

 Score =  116 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +TDY +R  +  A +  + P +   IA A  I   FL KIL  L +AGIVE+ RG
Sbjct: 1   MRIGAKTDYALRAALELAANDGERPVKAEAIATAQQIPPRFLEKILNDLRRAGIVESRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  PAD+I + DV++A +           H++         L  +L  A  A  
Sbjct: 61  VEGGHLLASPADEIAVADVIRAIDGPLANVSGKRPHELSYDGAAE-KLPELLVAARAALR 119

Query: 120 DVLTQYSIECLVRNR 134
           DVL + ++  +V  +
Sbjct: 120 DVLDRTTLADVVSGQ 134


>gi|58038586|ref|YP_190550.1| putative transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001000|gb|AAW59894.1| Putative transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 160

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K  DY   +L++   H +     + +A    + E  + K+L+ L  +G+V + RG R
Sbjct: 3   RLSKLADYATVLLVHLGRH-EGLATAAALAVETGVPEPTVAKLLKGLASSGLVLSHRGAR 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL    + +T+  V+ A +    +  C    +  C     CGL+       +A    
Sbjct: 62  GGYRLSSELETVTVATVIAAVDGPIAITACCDGRE--CEHSSLCGLSGQWDVVNDAILKT 119

Query: 122 LTQYSIECLVRNRSSIKK 139
           L   ++  + R+   + +
Sbjct: 120 LNSITLADMGRHAERLPR 137


>gi|116669235|ref|YP_830168.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609344|gb|ABK02068.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
          Length = 149

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R +M  A   D        IA+A       + K +  L + G+++  RG
Sbjct: 1   MKINAFADVSLRAMMVLAAAPDGNLLTTQSIADAVGTPYNHVSKAMARLRELGVIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL     + T+  +++        A+C +    DCPL+  C L   L +A  AF+
Sbjct: 61  RNGGSRLNEAGRRATVGQLLRQLNTRTDPADCHSL-NGDCPLINECRLRGALARAREAFY 119

Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
             L    +  L   R  +  +F A
Sbjct: 120 RELDDIVVSTLPGTR-QMAPVFQA 142


>gi|58617151|ref|YP_196350.1| cysteine desulfurase [Ehrlichia ruminantium str. Gardel]
 gi|58416763|emb|CAI27876.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
           ruminantium str. Gardel]
          Length = 526

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 5   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 65  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNGPGCLSNNNRCVTHKLWDDI 124

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144


>gi|119512675|ref|ZP_01631749.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
 gi|119462690|gb|EAW43653.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
          Length = 129

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 17  CAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
            A H  +  P +I QIA    I + +L ++L  L + GIV++ RG +GG  L R   +IT
Sbjct: 1   MATHYQSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGIVKSQRGSKGGYFLTREPWKIT 60

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + DV++  E    V  C   +      + +  +  + ++A  A   VL  Y+++ L   R
Sbjct: 61  VFDVLECLEG-LDVRTCEEDNNP--KSIDTAVIKEIWQEACQAANLVLQNYTLQELCEKR 117

Query: 135 SSIKKI 140
            S +++
Sbjct: 118 DSRRQL 123


>gi|312138539|ref|YP_004005875.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887878|emb|CBH47190.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 148

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT+ TD G+R++M  A             +AE   +S     K++  L + G+V T R
Sbjct: 1   MQLTQFTDLGLRIVMRLATDPAGSGGPSTRAVAEQLAVSYTHATKVVARLSELGVVTTRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG+ +       ++  + +  E    V  C       CPL   C L S LR A +AF
Sbjct: 61  GRGGGLAITDLGRTASVGWLTRQLEGDGEVVTCEGDK--PCPLRRGCRLRSSLRVAQDAF 118

Query: 119 FDVLTQYSIECLVR 132
           +  L   ++  +  
Sbjct: 119 YTALDAMTVRDIAA 132


>gi|222111232|ref|YP_002553496.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730676|gb|ACM33496.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
           TPSY]
          Length = 187

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT R    +  +   A+ +   P  +  I+    IS  +L  I   L +AG+V ++RG
Sbjct: 1   MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
             GG  L RP  ++++ D+V A+E+    A+       D  +  + G     +     + 
Sbjct: 61  PGGGYTLTRPPQELSVADIVIASEKYMGGAD---DKGTDTGIASAPGEMTAELWANFHSR 117

Query: 118 FFDVLTQYSIECLVRNRSS 136
             + L   ++  L+  R +
Sbjct: 118 VMEYLQSITVADLLTQREA 136


>gi|255321430|ref|ZP_05362590.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
           RM3277]
 gi|255301583|gb|EET80840.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
           RM3277]
          Length = 134

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y A   D P+ +  ++    IS+ FL KILQ L + GI+ + +G 
Sbjct: 1   MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILVSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L +  ++I+I  ++++ E+    V EC  ++        G C +  +     +  
Sbjct: 60  NGGFMLAQKPEEISIKRIIESAEKRKMAVFECSISADSCASSKGGMCQIWPMFSALQSKI 119

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++  +++ 
Sbjct: 120 DDFLDTITLANIIKK 134


>gi|253582245|ref|ZP_04859468.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835784|gb|EES64322.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 136

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+LMY  I+ D      ++I+E   I  LF  +IL+ L KA +V   +G
Sbjct: 1   MRLKNEIEYVFRILMYLTINGDNRIIPSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L + + +IT+ D +++ E S  + +C  S +      G+CG+  +L+   + F 
Sbjct: 61  AKGGYKLKKDSREITLKDAIESIEGSICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120

Query: 120 DVLTQYSIECLVRNR 134
             L   +   L   +
Sbjct: 121 SRLQNVNFRDLADGK 135


>gi|15919268|gb|AAL10759.1|AF338108_1 hypothetical iron-sulfur cofactor synthesis protein 1 [Ehrlichia
           ruminantium]
          Length = 522

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 1   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 61  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140


>gi|78189454|ref|YP_379792.1| hypothetical protein Cag_1493 [Chlorobium chlorochromatii CaD3]
 gi|78171653|gb|ABB28749.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           chlorochromatii CaD3]
          Length = 143

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK+ DY IR L+  A           IAEA  I   FL  +LQ L+   +V +  G
Sbjct: 1   MKILTKKADYAIRALLMLAAKEGGFMSAKAIAEAQDIPYQFLRSLLQELMHHHLVASKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG R+    D I++  +++  +    V+EC    ++ C    SC L   + +      
Sbjct: 61  AHGGFRIETNPDNISVKQLIEIFQGEVQVSECMFRKQV-CRNRSSCVLRHEIMRIEEVVS 119

Query: 120 DVLTQYSIECLVRN 133
               Q +I  L+R 
Sbjct: 120 HEFGQLTIGSLLRK 133


>gi|119491073|ref|ZP_01623231.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
 gi|119453618|gb|EAW34778.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
          Length = 144

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ ++ Y +  L+    H  +  P +I QIA    I E +L ++L  L ++GIV + R
Sbjct: 1   MELSCKSQYAVLALLELTAHYPHGEPRQIRQIARQHHIPERYLEQLLATLKRSGIVRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L +   +IT+ DVV   E S        +       + S  +  V  +A    
Sbjct: 61  GAKGGYLLAKEPWKITLFDVVVCLEGSNS----SPNRNRHHKSLESLIVDEVWEEAHQMA 116

Query: 119 FDVLTQYSIECLVRN 133
             +L +Y+++ L   
Sbjct: 117 NSILQKYTLQDLCEK 131


>gi|319953691|ref|YP_004164958.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola
           DSM 14237]
 gi|319422351|gb|ADV49460.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola
           DSM 14237]
          Length = 136

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L + A   D  P +IS+IA A  IS+ FL  IL  L K G + + +G+ 
Sbjct: 2   LSKKTKYGLKALTFLAQQVDRQPVQISEIANAENISQKFLETILLSLRKTGFLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  V++  E    +  C    F     DCP   +CG+  ++ +  ++
Sbjct: 62  GGYYLIKDPAEIQMASVMRVLEGPISMVPCVSLNFYEKCDDCPDEAACGVHKLMLQVRDS 121

Query: 118 FFDVLTQYSIECLVR 132
             ++    S+  L+ 
Sbjct: 122 NLEIYRNTSLADLIA 136


>gi|225572497|ref|ZP_03781361.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040037|gb|EEG50283.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
           10507]
          Length = 144

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +    ++ I E   I+  F +KIL+ L KA IV   RG 
Sbjct: 1   MLITRECDYAVRVIR--ALSGEERLSVNDICEREEITAPFAYKILKKLQKAKIVRGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNA 117
            GG  L +   +IT+LDV  A +   ++ EC    K  C    L G C +   L +    
Sbjct: 59  HGGYSLKKSVSEITLLDVYLAIDPGMYIIECMNPKKKCCRDEKLDGGCEVHQELLRIQER 118

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
             D+L++ S++ ++      +K+   
Sbjct: 119 LQDMLSERSLQEILGESEKKEKVVGE 144


>gi|94985506|ref|YP_604870.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94555787|gb|ABF45701.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 155

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L +             +I+EA  +   +L +IL  L   GIV++ +G
Sbjct: 1   MRLSATDVYAFQALGFLGSQELTRWVSSEEISEATGVHRPYLVRILAALTAKGIVKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTS-VLRKALNA 117
             GG  L R    I++ +VV+A +       C + +    C     C   + V ++  +A
Sbjct: 61  IGGGYALSRKPRLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEARCHARATVYQRMRDA 120

Query: 118 FFDVLTQYSIECLV 131
              VL ++S+E LV
Sbjct: 121 MLAVLQEFSVEDLV 134


>gi|168700728|ref|ZP_02733005.1| hypothetical protein GobsU_14484 [Gemmata obscuriglobus UQM 2246]
          Length = 154

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R +++ A         +QIAEA  + + +L KILQ L K GIV+T RG  G
Sbjct: 2   FSRTVEYALRAVVHLAHEAPKARTTAQIAEATQVPKDYLSKILQGLAKKGIVDTQRGVGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           GV L +    +TILDVV A E    +  C  +     P +  C L   +  A+    +  
Sbjct: 62  GVSLTKSPHDLTILDVVNAVEPIERITTCPLNLPNHGPNL--CPLHKRMDAAMALVEEAF 119

Query: 123 TQYSIECLVRNRSS 136
              ++  ++ + +S
Sbjct: 120 RGSTLAEVLADPTS 133


>gi|82702897|ref|YP_412463.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82410962|gb|ABB75071.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
           multiformis ATCC 25196]
          Length = 156

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++ T Y I+ L+Y A        +   IAE       +L KILQ L K  ++ + RG
Sbjct: 1   MILSRTTQYAIQALIYMATQPPGVAVLNRTIAECLRSPPTYLAKILQELCKGNLLYSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           ++GG  L   +D+I ++ +V+ TE   F  +C    K+ C    +C + +          
Sbjct: 61  KQGGFCLRESSDKINLMQIVRITEGPGFTEDCVLGLKV-CSDTTACPMHAKWWPIKQEIV 119

Query: 120 DVLTQYSIECLVR 132
            +L   +++ L  
Sbjct: 120 KLLQGQTLDTLAA 132


>gi|57239143|ref|YP_180279.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
 gi|57161222|emb|CAH58138.1| hypothetical protein Erum4140 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 522

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 1   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 61  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140


>gi|58579094|ref|YP_197306.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417720|emb|CAI26924.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 526

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M +T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 5   MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 65  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144


>gi|147677388|ref|YP_001211603.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146273485|dbj|BAF59234.1| predicted transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 123

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE   +SE +         KAG+V +VRG +GG  L R   +IT+ DV++A E      
Sbjct: 1   MAERQNLSEHYWSSYSHA-EKAGLVRSVRGAQGGYILAREPAEITVGDVIRALEGPIAPV 59

Query: 90  ECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
            C +      C     C   +V  +  +    VL   S+  +       ++
Sbjct: 60  SCVSEEAPGKCDEADYCITRTVWARVRDGIARVLDSISLADICLEAEKAQQ 110


>gi|152990870|ref|YP_001356592.1| BadM/Rrf2 family transcriptional regulator [Nitratiruptor sp.
           SB155-2]
 gi|151422731|dbj|BAF70235.1| transcriptional regulator, BadM/Rrf2 family [Nitratiruptor sp.
           SB155-2]
          Length = 133

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ T+Y +  L+  A   + P     ++    IS  FL KILQ L K  I+++ +G 
Sbjct: 1   MLFTRATEYALLALVVIA-KEERPLGTDYLSRRLNISRSFLAKILQALAKQDILKSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG +L RPA+Q++I ++  A E     + +C +S +  CP      C L   L K    
Sbjct: 60  SGGFQLARPANQLSIKEISTAAEGKGVNIFDC-SSDQACCPSNKGDFCTLWPFLNKLQTR 118

Query: 118 FFDVLTQYSIECLVR 132
             D L + +++ L+ 
Sbjct: 119 VDDFLEELTLQDLME 133


>gi|110634404|ref|YP_674612.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285388|gb|ABG63447.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
           BNC1]
          Length = 169

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  I   +  A +  +     S +AE   +S  +L K LQ L  A I+E+V G
Sbjct: 1   MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
             GG RL +  ++I++LD+V A E       C     +    L  S     CG+ + + +
Sbjct: 61  PYGGYRLAKAPERISLLDIVLAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLR 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
           A  A+  VL +  +  +V    +
Sbjct: 121 AERAWRAVLAETKLSEIVDGYKA 143


>gi|255262733|ref|ZP_05342075.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
 gi|255105068|gb|EET47742.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
          Length = 152

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +  Y +  L+  A+   +     + +I++   IS  +L ++   L + G+VE+VR
Sbjct: 1   MKLSTKGRYAMVALVDLALLQSDARLVTLGEISKRQDISLPYLEQLFVKLRREGLVESVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           G  GG RL R +  I ++D++ A +E+       A          +  L++ L + L+A 
Sbjct: 61  GPGGGYRLARASSDIRVVDILGAVDETVSAMHKGAGASGAASGSRAQSLSNRLWEGLSAH 120

Query: 118 FFDVLTQYSIECLVRN 133
            +  L Q  +  +V N
Sbjct: 121 VYVFLHQTRLSDVVSN 136


>gi|220910380|ref|YP_002485691.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7425]
 gi|219866991|gb|ACL47330.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7425]
          Length = 145

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y +  ++  A     + P +I QIA    I + +L ++L  L + G++ + R
Sbjct: 1   MELSCKSEYALLAMLELADAYKRNEPLQIRQIAALHSIPDRYLEQLLATLRRCGLIRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L R   QIT+L+V++  E    +        +    +    +    ++A  A 
Sbjct: 61  GAKGGYLLAREPWQITLLEVMECIEG---LETRPTDKSLSTETIERAVVRESWQEACQAA 117

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
             VL + S++ L   R + +++
Sbjct: 118 HSVLQRCSLKDLCDRRDTKRQL 139


>gi|254471092|ref|ZP_05084495.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
 gi|211960234|gb|EEA95431.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
           JE062]
          Length = 140

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M  A++ +    I +++EA       + K++Q L + G +++ RGR GG+ L      I 
Sbjct: 1   MLMAVNRNDKWTIDRLSEATNSGRPQVAKVVQILNRKGYIKSRRGRLGGLMLAHAPASIN 60

Query: 75  ILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           I  +++  E++F + ECFA S    CPL G C     L+ AL++F + L   ++  ++ N
Sbjct: 61  IGKLIRNVEDNFALVECFACSPSKPCPLEGVCRFRGKLKHALDSFMEELDAINLTQIIEN 120

Query: 134 RSSIK 138
              I+
Sbjct: 121 ADEIR 125


>gi|322419199|ref|YP_004198422.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320125586|gb|ADW13146.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 153

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    I + FL  IL  L  +GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARKYDKGPILIADLARDENIPKKFLEAILLSLKNSGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R    IT    ++  +       C +        +C    SCG+  V++   +A
Sbjct: 62  GGYYLGRNPKDITFGQAIRVMDGPLAPVPCVSESAYAECRECHDEFSCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLV 131
              +L + S+  ++
Sbjct: 122 MASILDRTSLADVL 135


>gi|254437797|ref|ZP_05051291.1| rrf2 family protein (putative transcriptional regulator)
           [Octadecabacter antarcticus 307]
 gi|198253243|gb|EDY77557.1| rrf2 family protein (putative transcriptional regulator)
           [Octadecabacter antarcticus 307]
          Length = 157

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L   A+   +    + +++    +S  +L ++   L +AG+VE+VRG
Sbjct: 1   MKLSTKGRYAMVALADIALQPAETLVSLGELSRRQGLSLPYLEQLFVKLRRAGLVESVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL + A  I +++++ A +E+       A          +  +T+ L + L+A  
Sbjct: 61  PGGGYRLAKGASDIRVVEILAAVDETVSAMHQGAGVSGGSSGSRAQSMTNRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +V N
Sbjct: 121 YVYLHQTRLTDVVSN 135


>gi|190892504|ref|YP_001979046.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190697783|gb|ACE91868.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 162

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL R + +I  LD+V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLARASCEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
           A  A+ + L +  +  LV + S 
Sbjct: 121 ADEAWRETLRRVRLSDLVDSLSQ 143


>gi|224367513|ref|YP_002601676.1| hypothetical protein HRM2_03930 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690229|gb|ACN13512.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 162

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +   +     L Y     ++    I QIAE   I   +L K+   L KAGIV +  G
Sbjct: 1   MQFSIGVENAFHSLFYMVDFPEHKTIGIKQIAELNKIKVTYLSKVFTKLRKAGIVRSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------------IDCPLVGSCGL 107
            +GG  L + A+ I+  D+++A E   +  +C    K             +CP    C +
Sbjct: 61  VKGGYELAKQAENISFWDIIEAIEGPTYFFQCAEIRKKNIFVDDPSVFTAECP----CLI 116

Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
             V+++A   F D L   S+  L
Sbjct: 117 KVVIQEAEELFRDRLRNRSLRWL 139


>gi|313682882|ref|YP_004060620.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155742|gb|ADR34420.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 134

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK ++Y +  L+  A    +P     +++   IS+ FL KILQ L + GI+ + +G 
Sbjct: 1   MLMTKASEYALLSLIVLA-KAGHPLDADTLSKELDISKSFLAKILQSLARQGILNSYKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117
            GG  L R + +IT+L+V++A E  S  V  C  S + DCP     SCGL   L +    
Sbjct: 60  NGGFELARHSREITVLEVMEAAEGKSPAVFSCSPSQE-DCPSNKAMSCGLWPFLNRLQGK 118

Query: 118 FFDVLTQYSIECLVRN 133
               L   ++E ++  
Sbjct: 119 VDAFLGTLTLEAILEE 134


>gi|186683299|ref|YP_001866495.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465751|gb|ACC81552.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 145

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  + +Y +  ++    +  N  P +I QIAE   I   +L ++L  L   G++ ++R
Sbjct: 1   MRLPNKFEYSLLAMLALVDSYQNGDPMQIKQIAELKGIQNRYLEQLLATLRCQGLINSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNA 117
           G +GG  L R   +IT+LDV+ A E      E  A         + S  +  V ++A  A
Sbjct: 61  GAKGGYILARDPRKITVLDVLTAIEG----VEIDAPANNTTIDTMESSIVEEVWQEACQA 116

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
              V  ++S++ L   RS  +++
Sbjct: 117 ANFVFQKHSLQDLWERRSKRQQM 139


>gi|77165193|ref|YP_343718.1| hypothetical protein Noc_1716 [Nitrosococcus oceani ATCC 19707]
 gi|254434008|ref|ZP_05047516.1| rrf2 family protein (putative transcriptional regulator)
           [Nitrosococcus oceani AFC27]
 gi|76883507|gb|ABA58188.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
           ATCC 19707]
 gi|207090341|gb|EDZ67612.1| rrf2 family protein (putative transcriptional regulator)
           [Nitrosococcus oceani AFC27]
          Length = 141

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R  Y I  +M  A+        +  IA+   IS  +L +I   L   G+VE +RG
Sbjct: 1   MRFSNRPRYAISAMMNLALVKQQKSITLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  L R A++ITI +++ A +             +   +           +      
Sbjct: 61  PGGGYHLTRAAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFSM 112

Query: 117 AFFDVLTQYSIECLVRN 133
             +D L Q ++  L R 
Sbjct: 113 RLYDFLNQITLADLARR 129


>gi|168699748|ref|ZP_02732025.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 169

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+++ DY + +L Y    N        IAE   +S  F+  IL+ L ++G V + RG +G
Sbjct: 4   LSRKADYALLILSYL-YQNKSGGTARAIAEQFGLSRSFVANILKELCQSGFVASHRGVKG 62

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAFF 119
           G  L R A  +++ ++++  E+ F +  C    A     C    +C +   +        
Sbjct: 63  GYALSRDAAGVSLAELLETVEDGFRLTVCNTVHADGAEPCSHSSTCTVKGPMAGVYQRLM 122

Query: 120 DVLTQYSIECLVRNRSS 136
            VL   ++  L   +S 
Sbjct: 123 GVLRDVTLAELFDPQSP 139


>gi|238060932|ref|ZP_04605641.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882743|gb|EEP71571.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 166

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 18/152 (11%)

Query: 1   MHLTKRTDYGIRVLM-----------------YCAIHNDYPNRISQIAEACCISELFLFK 43
           M+++ R+DY +R ++                 +         + + +AE+  I   FL  
Sbjct: 1   MYVSARSDYALRAMLAVAVAAADGGGTTGDLGHAPAPGGELVKAAALAESQAIPLSFLQG 60

Query: 44  ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
           IL  L +AG++ + RG  GG  L RPAD+I++ DV++A   S        +       V 
Sbjct: 61  ILLDLRRAGLLLSHRGAEGGYALTRPADEISVGDVLRAVGGSLTSVRGLPAEIAGYHGVA 120

Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           + GL  V      A   V+ + S+  L+  +S
Sbjct: 121 T-GLRDVWLAVDGAIATVVDRTSLADLLAAKS 151


>gi|253999837|ref|YP_003051900.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
           SIP3-4]
 gi|253986516|gb|ACT51373.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           SIP3-4]
          Length = 154

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+R LMY +   +     I+++A+   +    L K++  L K G ++  RG
Sbjct: 5   MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+RL      +++  VV+  E    + +C    +  CPL GSCGL  VL ++L+ F+
Sbjct: 65  PGGGLRLGMDPASLSLGLVVRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121

Query: 120 DVLTQYSIECLVRNRSS 136
             L  Y++  +    +S
Sbjct: 122 RHLDTYTLADVTPKHTS 138


>gi|226356686|ref|YP_002786426.1| Rrf2 family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226318676|gb|ACO46672.1| putative transcriptional regulator, Rrf2 family [Deinococcus
           deserti VCD115]
          Length = 155

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+    Y  + L +     +       +I++A  +   +L +IL  L   G+V++ +G
Sbjct: 1   MRLSATDVYAFQALGFLGTQAEGHWISSEEISDATGVHRPYLVRILAALTAKGVVKSKKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLT-SVLRKALNA 117
             GG  L R    I++ +VV+A +       C + +    C     C    S+ R+  +A
Sbjct: 61  IGGGYALARKPQLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEDRCHARASIYRRMRDA 120

Query: 118 FFDVLTQYSIECLV 131
              VL ++S+  LV
Sbjct: 121 MLGVLQEFSVADLV 134


>gi|172041371|ref|YP_001801085.1| Rrf2 family transcriptional regulator [Corynebacterium urealyticum
           DSM 7109]
 gi|171852675|emb|CAQ05651.1| putative transcriptional regulator (Rrf2 family) [Corynebacterium
           urealyticum DSM 7109]
          Length = 164

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M LT   D G+RVLM           +  P RI  +A+    S   + K++  L   G++
Sbjct: 1   MQLTTFADLGLRVLMVLGATQAVDAADRSPVRIQDLADQLNASRNHVAKVVNMLTSDGLL 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRK 113
           E++RGR GGV +     + ++  +++  E +  V +C     + CPL    C L   L  
Sbjct: 61  ESIRGRYGGVHITEQGMRASVGALLRQLEGNREVVDC--EGALQCPLARHDCALRRRLAA 118

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A  AFF  L   ++  LV     +
Sbjct: 119 AQEAFFATLDGDTVGDLVSATKGL 142


>gi|157737595|ref|YP_001490278.1| hypothetical protein Abu_1353 [Arcobacter butzleri RM4018]
 gi|157699449|gb|ABV67609.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 135

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  + Y I+VL+Y A  N     + ++++   I   +L K++  L K  ++  ++GR
Sbjct: 1   MILSTTSQYAIKVLIYMAEDNSKLYSVKELSKILEIPYKYLSKVMTNLSKKELILAIQGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L +P ++I + D++ A E+     +C     + C     C L     ++      
Sbjct: 61  YGGFKLSKPKEEIKLKDILVALEDE-SFKQCVLGGGV-CNQKNKCELHDTWDESKQTIQK 118

Query: 121 VLTQYSIECL 130
            L + ++  L
Sbjct: 119 SLLEVTLGEL 128


>gi|331092089|ref|ZP_08340920.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402290|gb|EGG81861.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 131

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TDYGIR+++Y  I N+       +AE   I + ++ K+ + L  A IV + +G 
Sbjct: 1   MQLSATTDYGIRIVLYL-IKNNEIISSGVLAEQLEIPKTYVLKVTKKLELANIVTSYQGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ L     QIT+ DV+ A E +  + +C    ++ D      C L  V      A  
Sbjct: 60  NGGIGLAGDPAQITLWDVISAVESTTVINKCMEQENEYDVKAEDYCKLRKVYGLLQQAVE 119

Query: 120 DVLTQYSIECL 130
           D L    +  L
Sbjct: 120 DRLQSIKLIDL 130


>gi|313201811|ref|YP_004040469.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
 gi|312441127|gb|ADQ85233.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
           MP688]
          Length = 154

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK TD G+R LMY +   +     I+++A+   +    L K++  L K G ++  RG
Sbjct: 5   MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG+RL      +++  V++  E    + +C    +  CPL GSCGL  VL ++L+ F+
Sbjct: 65  PGGGLRLGMDPASLSLGLVIRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121

Query: 120 DVLTQYSIECLVRNRSS 136
             L  Y++  +    +S
Sbjct: 122 RHLDTYTLADVTPKHTS 138


>gi|261855901|ref|YP_003263184.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Halothiobacillus neapolitanus c2]
 gi|261836370|gb|ACX96137.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
           neapolitanus c2]
          Length = 150

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT +  + +  L++ A   +      +++I+    +S  +L ++   + +A +V   R
Sbjct: 1   MRLTTKCRHAVTALIHLANRSNEQTTVSLAEISTIQGVSISYLEQLFSKMRQADLVIGTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKA 114
           G  GG RL RP +QIT+  +  A ++      C           CP   +        + 
Sbjct: 61  GPGGGYRLNRPPEQITVAHIADAIDD-----RCREERLEGFNKSCPDKRNFA-QDKWNEF 114

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
               +  L   ++   V N++ I+
Sbjct: 115 SRELYLFLDTITLSRFVENQTPIQ 138


>gi|72161204|ref|YP_288861.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX]
 gi|71914936|gb|AAZ54838.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX]
          Length = 150

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A     P    Q+A A  I   FL  IL  L +AG+V + RG 
Sbjct: 1   MRLSARVDYALRAAAELAAVGGGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA +I++ D+++A +             ++        L  V      +   
Sbjct: 61  VGGYWLARPASEISLADIIRAVDGPLANVRGERPEHLEYDGAAR-SLQQVWIALRASERA 119

Query: 121 VLTQYSIE 128
           +L   ++E
Sbjct: 120 ILESVTLE 127


>gi|153812308|ref|ZP_01964976.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
 gi|149831715|gb|EDM86802.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
          Length = 147

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M   K+T YG+  L+  A      P  +  IAE   IS  FL  I     + GIV++V+G
Sbjct: 1   MKFCKKTRYGLTALVDLAAQPSTTPVALKTIAERNDISLQFLEHIFASFRRTGIVKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L + AD+IT+  VV+  E S+ + +     +     +       V+        
Sbjct: 61  SQGGYNLAKAADEITVASVVEVLEGSYHLEDEDVLAENSYKGISDTIQKLVVDSVNQELD 120

Query: 120 DVLTQYSIECL 130
            +L+  ++  +
Sbjct: 121 QILSNLTLAQM 131


>gi|284040273|ref|YP_003390203.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283819566|gb|ADB41404.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 161

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+  Y I+ L          P  IS I+    I + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKAKYAIKALKVLTEEYGKGPVLISYISAKENIPKKFLEAILLELRNHGILQSQKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
           GG  L     ++ +  V++  +       C + +      DC    +C L  ++ +  +A
Sbjct: 62  GGYLLRVDPGRVNLAQVLRVIDGPIAPTPCVSFNFYVKCDDCNDEVTCALRPIMERVRDA 121

Query: 118 FFDVLTQYSI 127
              V    ++
Sbjct: 122 NLGVYENTTL 131


>gi|149202529|ref|ZP_01879501.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
           sp. TM1035]
 gi|149143811|gb|EDM31845.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
           sp. TM1035]
          Length = 149

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +T +T Y ++ LM  A          RI  IA      + FL  IL  L +AG++ + RG
Sbjct: 2   ITHKTKYALKALMVLADEKAGEGVALRIEDIAARSGAPKRFLEHILLDLKRAGLIGSRRG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           R GG  + +   ++++ +V++  +       C +        DC    +C + +V     
Sbjct: 62  RNGGYEMIKEPRRVSLAEVLRLIDGPMAPLPCLSRKAYQRCEDCTDEQTCRVRAVFGGFY 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
             +  ++   ++  L R+   ++
Sbjct: 122 ATYILMIESLTVADLQRDARPLE 144


>gi|322419855|ref|YP_004199078.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320126242|gb|ADW13802.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 153

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    I + FL  IL  L  +GI+++ +GR 
Sbjct: 2   ISKKTKYGLKALIYLARKYDQGPILIADLAREERIPKKFLENILLSLKNSGILQSRKGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L RP D+IT    V+  E       C +        +C    +CG+  V++   + 
Sbjct: 62  GGYYLGRPPDKITFGQAVRVMEGPLAPVPCVSEMAYAKCTECGDELTCGIRLVMKDVRDE 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++  +++ 
Sbjct: 122 MARILDGTTLADVLKK 137


>gi|169630216|ref|YP_001703865.1| hypothetical protein MAB_3134c [Mycobacterium abscessus ATCC 19977]
 gi|169242183|emb|CAM63211.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 137

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+ TD G+R++M  A+   +       +A   C+S     K++  L + G +E+ RG
Sbjct: 1   MQLTRFTDLGLRIVMRLAVEGPNAQLHTDDLAAQLCVSYTHATKVVARLSEMGAIESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GGVR+ +      +  + +  E S  V +C       CPL  +C L   LR A +AFF
Sbjct: 61  RHGGVRITQDGLGRRVGSLARKLERSGEVIDC--EGDPPCPLRRNCRLREALRSAQDAFF 118

Query: 120 DVLTQYSIECLVR 132
             L Q+++  + R
Sbjct: 119 THLDQWTVAEIAR 131


>gi|253700358|ref|YP_003021547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251775208|gb|ACT17789.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 153

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ L+Y A   D  P  I+ +A    + + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L R   +IT    V+  E       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYYLGRHPSKITFGQAVRVMEGPLAPVPCVSETAYAKCTECENEVTCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRN 133
              +L   ++  ++  
Sbjct: 122 MAVILDGTTLADVLEK 137


>gi|57242644|ref|ZP_00370581.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter upsaliensis RM3195]
 gi|57016573|gb|EAL53357.1| rrf2 family protein (putative transcriptional regulator)
           superfamily [Campylobacter upsaliensis RM3195]
          Length = 133

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y +  +  P  +  +A    I + FL KILQ L + G++ + +G 
Sbjct: 1   MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
           RGG  L R     T+ +++ + E +   V EC       CP    +C L SVL       
Sbjct: 60  RGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGV---CPSQKENCHLLSVLVNLQQKI 116

Query: 119 FDVLTQYSIECLVRNR 134
            + L   ++E ++ N 
Sbjct: 117 DNFLDSITLEDIINNN 132


>gi|325830725|ref|ZP_08164109.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
 gi|325487132|gb|EGC89575.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
          Length = 186

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       D    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGDSYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+ L      +T+L+V++A +    ++ C       C     C    + + A      
Sbjct: 61  RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119

Query: 121 VLTQYSIECLVRNRSS 136
                +++ L+   +S
Sbjct: 120 YFGAITLKDLIEQGAS 135


>gi|74316354|ref|YP_314094.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055849|gb|AAZ96289.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 154

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++ + Y ++ L+Y A   D  P     IA    +   +L KILQ L K  ++ + RG
Sbjct: 1   MILSRTSQYAVQALIYMATQPDATPVLNKDIAAKLGVPAPYLAKILQSLAKGNLLFSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L    ++IT++ +   TE   F   C    K  C    +C L            
Sbjct: 61  RLGGFCLREGGEKITLMQIFLLTEGPAFTQSCLLGLK-KCSDETACPLHFRWVPVKKKII 119

Query: 120 DVLTQYSIECLVR 132
           D+L + +++ L +
Sbjct: 120 DLLHETTLDKLAK 132


>gi|257460500|ref|ZP_05625601.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
           RM3268]
 gi|257441831|gb|EEV16973.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
           RM3268]
          Length = 137

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  ++  A   +    +  I+    IS  FL KILQ L +AG++ + +G 
Sbjct: 1   MLFTKASEYALLSMICIAGKEES-MDVDSISSELGISRSFLAKILQNLARAGLLNSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
           +GG  L R AD+IT+ +++K+ E     V +C A     CP   + C +  +  +     
Sbjct: 60  KGGFVLARNADKITLSEIIKSAERRKATVFDCTAEGIDACPNGRTLCRVNLMFGELQEKV 119

Query: 119 FDVLTQYSIECLVRNRSS 136
            + +   ++  ++     
Sbjct: 120 DEYMDTITLADIIGKERK 137


>gi|83814365|ref|YP_444885.1| rrf2 family protein (putative transcriptional regulator)
           [Salinibacter ruber DSM 13855]
 gi|83755759|gb|ABC43872.1| rrf2 family protein (putative transcriptional regulator)
           [Salinibacter ruber DSM 13855]
          Length = 215

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47
           M L+K  +YG+R ++Y                       I  I++   I   FL K+ Q 
Sbjct: 54  MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 113

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           L  AG++ + RG  GGV L R  D I++ ++V A + +    EC       C     C L
Sbjct: 114 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 172

Query: 108 TSVLRKALNAFFDVLTQYSI 127
                +  +       + ++
Sbjct: 173 HEHWTEERDRMKATFQRTAL 192


>gi|254562344|ref|YP_003069439.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269622|emb|CAX25593.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens DM4]
          Length = 150

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 15  MYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           M+  +           +A+   IS   L KI Q LV+AG+VE  +GR GGVRL R A +I
Sbjct: 1   MHLTLAERRVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREI 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            +  +V   E    V +C    +  CPL+G C L      A  AFF  L + ++  +V  
Sbjct: 61  RLGRLVADLEGVGTVVDC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVVAG 117

Query: 134 R--SSIKKIFNA 143
              ++++ +F  
Sbjct: 118 PTAAALRALFRG 129


>gi|330720575|gb|EGG98846.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC2047]
          Length = 130

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           S I+    IS  +L ++   L +  +V +VRG  GG +L R  +QI + ++V A  ES  
Sbjct: 2   SDISSRQDISLSYLEQLFSKLRRRELVTSVRGPGGGYQLARELEQICVAEIVDAVNESVD 61

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
              C  +   +C    +C   ++           L+  S+  LV  R 
Sbjct: 62  ATLC--NGDNNCQHGHACLTHNLWDDLSKQIHSFLSSISLRDLVDRRE 107


>gi|317132029|ref|YP_004091343.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
 gi|315470008|gb|ADU26612.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
          Length = 135

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +R++   A           ++E   ++  F  KI + L +AGIV + +G 
Sbjct: 1   MRITQEADYAVRIIDCLATAGTR-MDARTVSEKTGVTLRFTLKIFRKLGQAGIVRSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
           +GG  L R  D+I +  V++A +    +  C  +  + C L+     C   +V  +    
Sbjct: 60  QGGYELARDPDEINLRQVIEAVDGPININRCM-TGSLPCALLEDTRLCYYHTVFNELSKT 118

Query: 118 FFDVLTQYS 126
             + L   +
Sbjct: 119 IQEKLESVT 127


>gi|325284485|ref|YP_004257024.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
 gi|324316659|gb|ADY27770.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           proteolyticus MRP]
          Length = 156

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++  ++ +  ++              + A+   + + +L K L+ LV+AG++    G
Sbjct: 1   MKLSQGVEWCLHAVVLLGQLPQGTVLPRTLMAQHHGLPDDYLAKYLKQLVRAGVLMASTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
            RGG RL RPA++IT  +V++A E       C         A+   +C     C +  ++
Sbjct: 61  PRGGYRLARPAERITAWEVIEAIEGGQSFFHCQEIRQCGTGAARPAEC--TEPCAIHQMM 118

Query: 112 RKALNAFFDVLTQYSIECLVRN------RSSIKKIFNA 143
             A   + D L+Q ++  LV+         + + + NA
Sbjct: 119 HSAFLTWKDQLSQTTVADLVQQVPEHVRERNRQGLLNA 156


>gi|332183985|gb|AEE26239.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida 3523]
          Length = 136

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++I+E+  ++   + K+L  L  A IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAQNDSNPYSAAKISESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L     +IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    +
Sbjct: 63  GGYTLVSDPREITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLGL 120

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 121 LSKTSIYDIVNNKDK 135


>gi|218674482|ref|ZP_03524151.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 156

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 7   TDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            ++ +      A +          +AE   + + +L K LQ L +A +VET  G  GG R
Sbjct: 1   VEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYR 60

Query: 66  LCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRKALNAFF 119
           L R   ++  L++V+A E       C        C   G      C +  ++ +A  A+ 
Sbjct: 61  LARAPSEVNFLEIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWR 120

Query: 120 DVLTQYSIECLV 131
           D L +  +  LV
Sbjct: 121 DTLRRVRLSDLV 132


>gi|87306783|ref|ZP_01088930.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Blastopirellula marina DSM 3645]
 gi|87290962|gb|EAQ82849.1| Transcriptional Regulator, BadM/Rrf2 family protein
           [Blastopirellula marina DSM 3645]
          Length = 142

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M+++ +T+Y    ++  A    +  P R+ ++A    I   FL +IL  L  AG+V++ R
Sbjct: 1   MNISAKTEYACVAMIELAALYDSGDPVRVRELAATHSIPAHFLTQILLQLKGAGMVQSTR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG RL R   +I+I D+ +  E       C A  K   P   +  L ++  +A  A 
Sbjct: 61  GATGGYRLARDPSEISIYDIHRVIEGDSD-QPCGALQK---PTPAAAALKALCCEAATAQ 116

Query: 119 FDVLTQYSIECLVRNRSS 136
            ++L+  ++  +     S
Sbjct: 117 REILSAATLADMAEKAGS 134


>gi|254423218|ref|ZP_05036936.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
 gi|196190707|gb|EDX85671.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
          Length = 134

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 13  VLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
            L+  ++H     P RI QIA    I + +L ++L  L + G V++ RG +GG  L R  
Sbjct: 3   ALIELSLHYSKGEPLRICQIAAQQGIPDRYLEQLLATLRRGGFVKSQRGAKGGYLLTREP 62

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
            Q+++LDVV   E      +  A             ++ V ++   +   VL +Y+++ L
Sbjct: 63  WQVSLLDVVSCIEG----FDANAREVKSPQTTEGAVVSEVWQEVWRSAESVLEEYTLQDL 118

Query: 131 VRNRSSIKKI 140
           V  R++ +++
Sbjct: 119 VDKRNTRQQV 128


>gi|154254085|ref|YP_001414909.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154158035|gb|ABS65252.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 149

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+K+T   +  ++  AI+    P +  +I +   I + +L +++Q LV AGI++ VRG 
Sbjct: 3   RLSKKTWLALEAVVDVAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRGP 62

Query: 61  RGGVRLCRPADQITILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGG  L R   +I + +VV+   A E S        S       +G   +  + ++    
Sbjct: 63  RGGYTLARERRRIPVGEVVRVVGAMEASDEPTATAPSE------LGERVIAPLWQEVQRE 116

Query: 118 FFDVLTQYSIECLVRNRSSI 137
               L   +IE + R    +
Sbjct: 117 LMAKLDNITIEDMCRKAEEV 136


>gi|254459294|ref|ZP_05072715.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
 gi|207083907|gb|EDZ61198.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
          Length = 133

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +     P     ++    I + FL KILQ L K GI+++ +G 
Sbjct: 1   MLITRASEYAILSLIVLS-KATSPMDSETLSNQLSIPKSFLAKILQSLAKKGILKSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG  L +    I++L V+ A E     V +C  S K DCP      C +   L K    
Sbjct: 60  NGGFTLLKDPKDISMLSVMSAVEGKAPAVFDCSPSQK-DCPSDRAELCSIWPFLNKLQGK 118

Query: 118 FFDVLTQYSIECLVR 132
             D L + S++ ++ 
Sbjct: 119 IDDFLAELSLDDILE 133


>gi|304436329|ref|ZP_07396306.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370684|gb|EFM24332.1| iron-sulfur cluster assembly transcription regulator IscR
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 175

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A   D   P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 29  MKISAKGRYGIASMVFLARSYDTSSPVTIISISEHLGISKIYLEQVFALLKRSKLVNSIK 88

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAE-----CFASHKIDCPLVGSCGLTSVLRK 113
           G +GG +L RP   IT  D++ A E    + E     C    K+D  L        +   
Sbjct: 89  GSQGGYQLARPPHDITAYDILSAIE--IALIEKTGSSCEKMEKLDLVLA-----RDLFGV 141

Query: 114 ALNAFFDVLTQYSIECLV 131
                 D L   ++E L+
Sbjct: 142 LDQNIHDTLNAVTLEDLL 159


>gi|209547809|ref|YP_002279726.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533565|gb|ACI53500.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 166

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  I  +   A +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMSDGVEQAIHSVAMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
            RGG RL +  ++I++LD++ A E       C        +   D      C +++ + +
Sbjct: 61  PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRLFAKPCNISAAMLR 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + SI  L
Sbjct: 121 AERVYRAELAKTSIADL 137


>gi|325291884|ref|YP_004277748.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
 gi|325059737|gb|ADY63428.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
          Length = 167

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I  +   A +        + +AE   +S  +L K LQ L  AGIV TV G
Sbjct: 1   MKLGDGVEQAIHSVGMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQLLSGAGIVSTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            +GG RL R  D+IT+LD+V A E       C     +   PL G      CG+ + + K
Sbjct: 61  PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A+   L + SI  ++ +
Sbjct: 121 AEKAYRAELAKTSIADILGD 140


>gi|288917460|ref|ZP_06411826.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
 gi|288351163|gb|EFC85374.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 1/137 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R +Y IR ++  A+ +        +A +  IS  +L  IL  L +AG++   RG 
Sbjct: 1   MYISARAEYAIRAMLALAVAHPDRVAAPALAASEEISLAYLQAILLDLRRAGLLFNRRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP D IT+ D+++AT  +          +       + GL+ V      A  +
Sbjct: 61  DGGYSLARPTDSITVGDILRATGGALTSVR-GEPAERATYGGAARGLSRVWLAVDAAIHE 119

Query: 121 VLTQYSIECLVRNRSSI 137
           VL + ++  ++ ++ S+
Sbjct: 120 VLDRATLADVLADKVSV 136


>gi|189183482|ref|YP_001937267.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180253|dbj|BAG40033.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
          Length = 148

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y +  ++  A   +  P ++ +IA+   I+  +L ++   L   GIV++V+G
Sbjct: 1   MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
             GG  L     + TI D++ A EE   +  C  ++   C  L   C    +  +     
Sbjct: 61  PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNVRCTAHYLWEELEYKI 118

Query: 119 FDVLTQYSIECLVRNR 134
               ++ S++ ++  +
Sbjct: 119 KHYFSEISLDDIISGK 134


>gi|167627991|ref|YP_001678491.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597992|gb|ABZ87990.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A +N  P   ++IAE   ++   + K+L  L  + IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L      IT+LDVVKA E+   + EC   HK  C L GSC ++S  +   +   D+
Sbjct: 63  GGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSSYWKVLNSQLLDL 120

Query: 122 LTQYSIECLVRNR 134
           L++ SI  +V N+
Sbjct: 121 LSKTSIYDIVNNK 133


>gi|241668545|ref|ZP_04756123.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877080|ref|ZP_05249790.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843101|gb|EET21515.1| transcriptional regulator [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A +N  P   ++IAE   ++   + K+L  L  + IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L      IT+LDVVKA E+   + EC   HK  C L GSC +++  R   +   D+
Sbjct: 63  GGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHK-KCSL-GSCMVSNYWRVLNSQLLDL 120

Query: 122 LTQYSIECLVRNR 134
           L++ SI  +V N+
Sbjct: 121 LSKTSIYDIVNNK 133


>gi|257469482|ref|ZP_05633574.1| hypothetical protein FulcA4_09098 [Fusobacterium ulcerans ATCC
           49185]
 gi|317063726|ref|ZP_07928211.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689402|gb|EFS26237.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 136

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L+Y  I+ D      ++I+E   I  LF  +IL+ L KA +V   +G
Sbjct: 1   MRLKNEIEYVFRILLYLTINGDNRIISSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L + + +IT+ D +++ E +  + +C  S +      G+CG+  +L+   + F 
Sbjct: 61  AKGGYKLKKDSSEITLKDAIESIEGNICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120

Query: 120 DVLTQYSIECLVRNR 134
             L   +   L   +
Sbjct: 121 SRLQDVNFRDLADGK 135


>gi|85703168|ref|ZP_01034272.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. 217]
 gi|85672096|gb|EAQ26953.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius sp. 217]
          Length = 153

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  L+  A+        +  ++    IS  +L ++   L +A +V +VRG
Sbjct: 1   MKLSTKGRYAMVALVDIALQPAGAVVTLGDVSRRQDISLPYLEQLFVKLRRAELVTSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
             GG RL RPA +I + D++ A +E+       A          +  + + L + L+A  
Sbjct: 61  PGGGYRLMRPASEIRVSDILAAVDETIDALHKGAGASGGASGSRAQSMANRLWEGLSAHV 120

Query: 119 FDVLTQYSIECLVRN 133
           +  L Q  +  +  N
Sbjct: 121 YVFLHQTRLSDVAGN 135


>gi|325003478|ref|ZP_08124590.1| rrf2 family protein, putative transcriptional regulator
           [Pseudonocardia sp. P1]
          Length = 156

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + +  ++ +   +  A     P   S++A    +   +L K +Q LV+AG+ E+V G 
Sbjct: 1   MRMGQGVEWALHCCLNLAW-TGEPVPGSRLAAFYDLPPAYLTKQMQALVRAGVCESVPGP 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
           RGG RL R  +++++LDVV A E       C +               GSC  +  +R+A
Sbjct: 60  RGGFRLVRAPEEVSLLDVVVALEGPEDAFRCTSILGAAPGGDPAADYSGSCAFSLSMRRA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A+   L   S+  +  +
Sbjct: 120 ELAWRRELAARSLADVGDD 138


>gi|229160056|ref|ZP_04288058.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|228623367|gb|EEK80191.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
          Length = 140

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE   +SE FL K+   L KAGIV +V G +GG RL +  + ++  DV++A E    + 
Sbjct: 1   MAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60

Query: 90  EC---------FASHKIDC----PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           +C         +      C    P   SC +  V+ +A     + L + ++  L
Sbjct: 61  QCKNIVQNGLLYRDEDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 114


>gi|332524348|ref|ZP_08400568.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332107677|gb|EGJ08901.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 166

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ RT + +  L+   +     P  ++ I     +S  ++ ++   L + G+VE+ RG
Sbjct: 1   MRMSTRTRFAVNALVDLGLRQQAGPVALAAICGRLQVSLSYMEQVFARLRRQGLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R AD ITI DVV A E+    A      +             +  +      
Sbjct: 61  PGGGYTLGRRADAITIADVVSAVEDRPAPAAEVTPGQA------------LWSELDAVMM 108

Query: 120 DVLTQYSIECLVRNRSS 136
             ++  ++E L+  + +
Sbjct: 109 QHMSGITLESLLEEQRA 125


>gi|325679872|ref|ZP_08159441.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
 gi|324108310|gb|EGC02557.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
          Length = 150

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ + ++GI  L   AI+  N      S I+    IS+ +L +IL  L +AG +   +
Sbjct: 1   MKISTKVEFGIVALADIAIYSVNGETVSSSDISSRQNISQKYLEQILVALRQAGFIRGQK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKAL 115
           G RGG  L RPA +I+  +++   + +       +    D  L     SC    +  K  
Sbjct: 61  GSRGGYTLARPASEISFSEILNGLDNNILADTYVSEDDTDGGLRDKVNSC----IWDKLN 116

Query: 116 NAFFDVLTQYSIECLVR 132
               +   + ++   + 
Sbjct: 117 GYMREFTAKMTLADFIE 133


>gi|317502405|ref|ZP_07960570.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087998|ref|ZP_08336921.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896215|gb|EFV18321.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409309|gb|EGG88758.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 131

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK +DY IRV+   A+ +     I ++ E   I   F +KILQ + K+G++E  RG 
Sbjct: 1   MLFTKESDYAIRVIR--ALQDGGKKTIKELCELEQIPSAFGYKILQKMNKSGLIEIRRGP 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L +   + T+ DVV A E  F V EC     I       C +   L    ++   
Sbjct: 59  KGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAVHRELLGIQHSVEK 118

Query: 121 VLTQYSIECLVRN 133
           +L + ++  +++ 
Sbjct: 119 LLKKKTMADILKK 131


>gi|296106185|ref|YP_003617885.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
 gi|295648086|gb|ADG23933.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 139

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 1/127 (0%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           ++Y A H+        IA    ++   + KIL+ L  AG++ +VRG  GG RL RPA +I
Sbjct: 1   MVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVSGGYRLQRPAAEI 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           ++  ++ A EE     EC +    DC L G C +    R   +A    L   S+E L + 
Sbjct: 61  SVSQIIFALEEHRGFTEC-SMQPNDCFLQGVCTIQGNWRLISHAIETALDSVSLEALAKP 119

Query: 134 RSSIKKI 140
               + +
Sbjct: 120 TLPTRDV 126


>gi|240139920|ref|YP_002964397.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens AM1]
 gi|240009894|gb|ACS41120.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
           extorquens AM1]
          Length = 150

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 15  MYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           M+  +           +A+   IS   L KI Q LV+AG+VE  +GR GGVRL R A +I
Sbjct: 1   MHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREI 60

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            +  +V   E    V +C    +  CPL+G C L      A  AFF  L + ++  +V  
Sbjct: 61  RLGRLVADLEGVGTVVDC---RRDPCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVVAG 117

Query: 134 RS 135
            +
Sbjct: 118 PT 119


>gi|320104168|ref|YP_004179759.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
           43644]
 gi|319751450|gb|ADV63210.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
           ATCC 43644]
          Length = 164

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            T+R +Y +R   Y A  + Y +   ++AEA  +   +L K+LQ L + G++ + RG  G
Sbjct: 2   FTQRVEYALRATAYLASLDGYNSTTEEVAEATKVPRAYLSKVLQELRRGGVIRSRRGVGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ L     ++T+L VV+A E    +  C    K        C L   L  A+       
Sbjct: 62  GIVLAIDPKELTLLRVVQAVEPLQRITTCPLGLKA--HGARLCPLHKRLDDAMAKVEAAF 119

Query: 123 TQYSIECLVRNRS 135
              ++  ++   S
Sbjct: 120 AGVTLAQVLAEPS 132


>gi|294102885|ref|YP_003554743.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
 gi|293617865|gb|ADE58019.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
           colombiense DSM 12261]
          Length = 141

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++        +   AI +       ++AEA  +SE  L K+ Q LV+ G V + RG  G
Sbjct: 7   ISEAASLAFHGMGLLAI-SGKRMSTKEMAEAINVSEAHLAKVFQRLVRCGFVTSSRGPGG 65

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L RPA+ I++LD+ +A E       C   H+ +CP   +C    +L+K      D L
Sbjct: 66  GFELARPAESISLLDIYEAIEGQTDGGYCLL-HQKECPFR-TCIFGDMLKKMTKEIRDFL 123

Query: 123 TQYSIECLVRNR 134
            + ++  L R  
Sbjct: 124 REKNLSELARGE 135


>gi|227549985|ref|ZP_03980034.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227077937|gb|EEI15900.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 162

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L + T++    L+  +   D  P     +AE   I + +L K LQ LV+AGI+ +  G
Sbjct: 1   MKLPRGTEWMAHCLVALSACEDIGPLAKHTLAEMFDIPDAYLSKQLQQLVRAGIIRSSAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
            RGG  L RPA  +T+LDV+K  +    +  C        F +        G CG+   +
Sbjct: 61  NRGGYFLARPASTVTLLDVIKTVQGDAPLFVCEEVRCRGIFTNDADAIRETGPCGIHHAM 120

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            +A N + D L   ++E L + 
Sbjct: 121 VEAENRWRDSLATVTVEALTQQ 142


>gi|331090359|ref|ZP_08339241.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401244|gb|EGG80834.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 141

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TDY +R++ + + + +      +I+EA   S  ++  IL+ L K G+VE +RG 
Sbjct: 1   MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
           +GG RL +  D I++ DV+K  E++  + +C  + + +C L  +  C +           
Sbjct: 60  KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
              L   + E L ++     +IF
Sbjct: 119 ESELKHMTFEMLRKSGGGADRIF 141


>gi|255020290|ref|ZP_05292358.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756]
 gi|254970210|gb|EET27704.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756]
          Length = 162

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K ++Y ++ L+Y A      P     I++   +   +L KILQ L K G++++ +G
Sbjct: 1   MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLRVPAQYLAKILQVLAKRGVLDSYKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG  L   A+Q+ IL+VV+  E + F   C    K  C    +C +    +       
Sbjct: 61  RGGGFVLRPGAEQMNILEVVEMVEGAPFGQGCVLGLKA-CADETACPVHYAWKPLKAQVV 119

Query: 120 DVLTQYSIECLVR 132
           ++L + +I  +  
Sbjct: 120 ELLGKQTIGSMAE 132


>gi|296269083|ref|YP_003651715.1| BadM/Rrf2 family transcriptional regulator [Thermobispora bispora
           DSM 43833]
 gi|296091870|gb|ADG87822.1| transcriptional regulator, BadM/Rrf2 family [Thermobispora bispora
           DSM 43833]
          Length = 154

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A   D P  + ++A+   +   +L  IL  + +AG+V   RG 
Sbjct: 1   MRLSARVDYALRAAAELAAAGDGPTTVGELAQGQDMPPKYLENILLQMRRAGLVRGQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA+QIT+ DV++A +            ++         L  V      +   
Sbjct: 61  EGGYVLARPANQITLADVIRAVDGPLANVRGERPEEVGYTGAAH-ALQRVWIALRASERA 119

Query: 121 VLTQYSIECLVRNR 134
           +L + ++E + +  
Sbjct: 120 ILERVTLEHVAKGE 133


>gi|226362111|ref|YP_002779889.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240596|dbj|BAH50944.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
          Length = 160

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  ++ + V++  A + +D P   + +A +  +   +L K LQ LV+AGI+ +V G
Sbjct: 1   MRMSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112
             GG  L R A  I++LDVV A E +     C         +      L   C ++  +R
Sbjct: 61  AAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMR 120

Query: 113 KALNAFFDVLTQYSIECL 130
           KA  A+   L   S++ +
Sbjct: 121 KADLAWRRELAGQSVDDV 138


>gi|307720334|ref|YP_003891474.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978427|gb|ADN08462.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           autotrophica DSM 16294]
          Length = 137

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K   Y IR+L Y A H D      ++++E   I   FL KI+  +VK+G+V ++RG
Sbjct: 1   MQLSKSAQYAIRILAYMADHKDSKLLNATELSETLLIPYKFLTKIMTEVVKSGLVVSIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG    +P  +I + +++    +S    +C       C  +  C L     +  +   
Sbjct: 61  RDGGYSFAKPPSEIMVSEILDIFHDSIKDEQCVLGIGF-CNGMCKCALHDQWMEPKHLMQ 119

Query: 120 DVLTQYSIECLV 131
            +  + ++E + 
Sbjct: 120 KMFQESTLEEIA 131


>gi|229154646|ref|ZP_04282763.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|228629044|gb|EEK85754.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
          Length = 137

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE   +SE FL K+   L KA IV +V G +GG RL +  + I+  DV++A E    + 
Sbjct: 1   MAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIF 60

Query: 90  EC----------FASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           +C                 C P   SC +  V+ +A     + L + ++  L
Sbjct: 61  QCKNIVQNGLLYRDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 112


>gi|148284617|ref|YP_001248707.1| iron-sulfur cluster assembly transcription regulation factor
           [Orientia tsutsugamushi str. Boryong]
 gi|146740056|emb|CAM80173.1| iron-sulfur cluster assembly transcription regulation factor
           [Orientia tsutsugamushi str. Boryong]
          Length = 148

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT ++ Y +  ++  A   +  P ++ +IA+   I+  +L ++   L   GIV++V+G
Sbjct: 1   MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
             GG  L     + TI D++ A EE   +  C  ++   C  L   C    +  +     
Sbjct: 61  PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNIRCTAHYLWEELEYKI 118

Query: 119 FDVLTQYSIECLVRNR 134
               ++ S++ ++  +
Sbjct: 119 KHYFSEISLDDIISGK 134


>gi|88195436|ref|YP_500240.1| hypothetical protein SAOUHSC_01732 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|87202994|gb|ABD30804.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
          Length = 116

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG+ +++  A         +  IAE   +S+L+L +++ PL  AG++ +VRG
Sbjct: 1  MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
           +GG +L  PA++I+  D+++  E      E   S   
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP 98


>gi|317488261|ref|ZP_07946828.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316912643|gb|EFV34185.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 186

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       +    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+ L      +T+L+V++A +    ++ C       C     C    + + A      
Sbjct: 61  RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119

Query: 121 VLTQYSIECLVRNRSS 136
                +++ L+   +S
Sbjct: 120 YFGAITLKDLIEQGAS 135


>gi|229095595|ref|ZP_04226579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|228687839|gb|EEL41733.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 140

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           +AE   +SE FL K+   L KAGIV +V G +GG RL +  + ++  DV++A E    + 
Sbjct: 1   MAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60

Query: 90  EC------------FASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           +C             A     C P   SC +  V+ +A     + L + ++  L
Sbjct: 61  QCKNIVQNGLLYRDEAEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLAWL 114


>gi|265989282|ref|ZP_06101839.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|262999902|gb|EEZ12641.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 123

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 25  LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DC 99
           GG  L  PA +I I ++++A + +     C +      C
Sbjct: 85  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPC 123


>gi|255522661|ref|ZP_05389898.1| hypothetical protein LmonocFSL_15876 [Listeria monocytogenes FSL
           J1-175]
          Length = 114

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
            +  IA+   +SE +L +++ PL  AGIV+++RG  GG  L    ++IT  D+++  E  
Sbjct: 1   SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGP 60

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
             + E     +             +  +  NA  DVL Q ++  L+++
Sbjct: 61  IVLVESMEDEEA--------AQRELWTRMRNAVRDVLDQTTLADLLKH 100


>gi|291545758|emb|CBL18866.1| rrf2 family protein (putative transcriptional regulator)
           [Ruminococcus sp. SR1/5]
          Length = 137

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY +RV+   A+  +    +S+I E   I+  F +KIL+ L  AG+VE  RG 
Sbjct: 1   MFITRESDYAMRVIR--ALMWEPRLSVSEICERESITAPFAYKILKKLQNAGLVEGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG  L R  +++++ ++  A +    + EC  +    CP  G     C     L++  +
Sbjct: 59  HGGYALKRDPEELSLYEIYSAIDPDMSIIECL-NGTYQCPRNGQDGVPCHAHDELQEIQD 117

Query: 117 AFFDVLTQYSIECL 130
             + +L + S++ L
Sbjct: 118 QLWTMLRRKSMKDL 131


>gi|266625010|ref|ZP_06117945.1| Rrf2 family protein [Clostridium hathewayi DSM 13479]
 gi|288863105|gb|EFC95403.1| Rrf2 family protein [Clostridium hathewayi DSM 13479]
          Length = 131

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RV++  A H  +    + ++AE   IS+ +L  I++ L+K  ++  + GR 
Sbjct: 2   ISTKGRYALRVMIDLAEHGGEGYIPLKEVAERQEISKKYLEIIVKELIKGKMLIGLGGRG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +LCR  ++  + ++++  E S     C +     C     C    +  +      D 
Sbjct: 62  GGYKLCRKPEEYKVGEILELMEGSLATVACLSKDAKPCSRAAICKTLPLWSEFDKMVHDY 121

Query: 122 LTQYSIECLV 131
             + ++  L+
Sbjct: 122 FYEKTLADLL 131


>gi|256393946|ref|YP_003115510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256360172|gb|ACU73669.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 159

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + +  ++G+  L+  A +    P    ++AE   +   +L K LQPLV+AGI+ +  G
Sbjct: 1   MQMGEGVEWGLHCLLALAWLEEHTPVATGRLAEIFELPPEYLKKRLQPLVRAGILASSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-------PLVGSCGLTSVLR 112
            RGG  L R  ++IT++DVV A E       C    K               CG+   +R
Sbjct: 61  ARGGYALARRPEEITLMDVVAAVEGREEAFRCTEIRKQGAGALAEADEFGEPCGIAKAMR 120

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  A+   L   ++  ++
Sbjct: 121 RAEMAWRRELAAQTVADVM 139


>gi|121997026|ref|YP_001001813.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588431|gb|ABM61011.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 158

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ +  Y +  +M  A++ D  P  +++I+    IS  +L ++   + + G+V  VRG
Sbjct: 1   MRLSTKGRYAVTAMMELALNTDKGPVTLAEISHTQGISLSYLEQLFARMRRDGLVVGVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA +I++  ++ A +E     +       D      C    +        +
Sbjct: 61  PGGGYRLARPAGEISVAQIITAVDEGTAQGQGVGEGSSD---DDRCLTHDLWVDLSRQIY 117

Query: 120 DVLTQYSIECLVRN 133
           D L   ++E + R+
Sbjct: 118 DFLNGITLEQMARD 131


>gi|291300389|ref|YP_003511667.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569609|gb|ADD42574.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 162

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +++  ++ I   +  A  N      S++A    +   +L K LQ L +AGI+ +  G 
Sbjct: 5   MKMSEGVEWAIHSCLNLAWANRDAIPASRLAAYHELPPAYLNKQLQALCRAGILTSTTGP 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
           RGG RL RP D I+ +DVV A E       C        +         +C ++  +R A
Sbjct: 65  RGGFRLARPLDDISFMDVVTAIEGGDDAFACTEIRQRGPNGGPAENFPHTCAVSRTMRAA 124

Query: 115 LNAFFDVLTQYSIEC 129
              +   L Q+++  
Sbjct: 125 ELTWRRELAQHTLAD 139


>gi|257791023|ref|YP_003181629.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|257474920|gb|ACV55240.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
          Length = 186

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+R DY  R+L       +    +S IAE   I   F   I   LVK G+++TVRG 
Sbjct: 1   MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+ L      +T+L+V++A +    ++ C       C     C    + + A      
Sbjct: 61  RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119

Query: 121 VLTQYSIECLVRNRSS 136
                +++ L+   +S
Sbjct: 120 YFGAITLKDLIEQGAS 135


>gi|300777967|ref|ZP_07087825.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300503477|gb|EFK34617.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 138

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++KR  Y ++ ++  A + N      S IA+   I   FL +IL  L +A +V + +G+ 
Sbjct: 2   MSKRCKYALKAMVRLARNYNQGFLPTSVIAQDENIPRKFLEQILLELKRAKLVNSKQGKV 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  +++++ D+ +  +    +  C    F     DC     C L   L      
Sbjct: 62  GGYYLLKSPNEVSLADIYRIFDGPIALTPCVSLNFYEACDDCVDEAVCYLRKELMIVREK 121

Query: 118 FFDVLTQYSI 127
               + + ++
Sbjct: 122 TRTSMMEATL 131


>gi|149278443|ref|ZP_01884580.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
           BAL39]
 gi|149230813|gb|EDM36195.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
           BAL39]
          Length = 156

 Score =  113 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T + +YG+R+L+  A        I+ I+E+  +S  ++ K+ + L  AG + +  G 
Sbjct: 1   MKITAQEEYGLRILLRIARQGKEGLSIAAISESEGLSTAYVAKLTRLLRMAGYINSTPGN 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
           +GG  L  PA +I I  V+K    + F       +      C     C + S+ +     
Sbjct: 61  KGGYSLAMPAAEININKVLKVLGGALFSQRFCEEYPGAVKLCTNSIDCSVRSLWQMIQLT 120

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
              +L Q S++ L+        +  +
Sbjct: 121 VDQLLDQVSLKDLLSPEQQSNFLLES 146


>gi|281418212|ref|ZP_06249232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|281409614|gb|EFB39872.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum JW20]
 gi|316941312|gb|ADU75346.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum DSM 1313]
          Length = 148

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  ++  A   +N     +  I+E   IS++FL ++   L KA IV + +
Sbjct: 1   MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
           G +GG +L R   QIT+LDV+ + E    + E       D  P +     +SV       
Sbjct: 61  GAQGGYQLTRTPSQITVLDVLLSVE--VSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 118

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L+  +I  LV      K 
Sbjct: 119 IKQTLSTITIADLVAEAEKHKD 140


>gi|256042842|ref|ZP_05445789.1| RfF2 family protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 100

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTK+  YG++ +++ A + +      S+IAE   I   FL  I   L  AG V + +G+ 
Sbjct: 2   LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DC 99
           GG  L  PA +I I ++++A + +     C +      C
Sbjct: 62  GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPC 100


>gi|153815582|ref|ZP_01968250.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
 gi|317502129|ref|ZP_07960308.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847013|gb|EDK23931.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
 gi|316896474|gb|EFV18566.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 140

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L + TDY +R++ + + + +      +I+EA   S  ++  IL+ L K G+VE +RG 
Sbjct: 1   MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
           +GG RL +  D I++ DV+K  E++  + +C  + + +C L  +  C +           
Sbjct: 60  KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118

Query: 119 FDVLTQYSIECL 130
              L   + E L
Sbjct: 119 ESELKHMTFEML 130


>gi|57239141|ref|YP_180277.1| hypothetical protein Erum4120 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161220|emb|CAH58136.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 156

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M  T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 1   MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 61  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140


>gi|77918499|ref|YP_356314.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544582|gb|ABA88144.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
           carbinolicus DSM 2380]
          Length = 132

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +T+  DY IR +++ +      +P  + +++    I   FL KIL  L+ A +V + RGR
Sbjct: 2   ITREADYCIRTILHLSRPEQRKHPVPVDELSRQMTIPAPFLRKILAKLINADLVHSHRGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG+ +    +QI++L++++  +     + +C  S  + C   G+C +   ++K  N   
Sbjct: 62  NGGLTIKGEPEQISLLEILQVADGKGLLLNQCLESEGV-CTHQGTCTVHDAMKKLQNVME 120

Query: 120 DVLTQYSIECLV 131
           + L   + + L+
Sbjct: 121 NHLKAITFDQLI 132


>gi|294506739|ref|YP_003570797.1| transcriptional regulator [Salinibacter ruber M8]
 gi|294343067|emb|CBH23845.1| Transcriptional regulator [Salinibacter ruber M8]
          Length = 162

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47
           M L+K  +YG+R ++Y                       I  I++   I   FL K+ Q 
Sbjct: 1   MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 60

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           L  AG++ + RG  GGV L R  D I++ ++V A + +    EC       C     C L
Sbjct: 61  LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 119

Query: 108 TSVLRKALNAFFDVLTQYSI 127
                +  +       + ++
Sbjct: 120 HEHWTEERDRMKTTFQRTAL 139


>gi|222054747|ref|YP_002537109.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221564036|gb|ACM20008.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 153

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T YG++ ++Y A +++  P  I+ +A    I + FL  IL  L   G++++ +G+ 
Sbjct: 2   ISKKTKYGLKAMIYLAKVYDQGPVLIADLAREEKIPKKFLELILLTLKNHGVLQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I++  +V+  +       C +        +C    +CG+  V++   +A
Sbjct: 62  GGYYLGKLPKEISLGKLVRILDGPLAPVPCVSETAYAKCDECLDERTCGIRLVMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
             ++L   S+  ++      +++
Sbjct: 122 IAEILDGTSLADVLERSEKAEQL 144


>gi|325107421|ref|YP_004268489.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Planctomyces brasiliensis DSM 5305]
 gi|324967689|gb|ADY58467.1| transcriptional regulator, BadM/Rrf2 family [Planctomyces
           brasiliensis DSM 5305]
          Length = 140

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R ++  A   D P     IA        +L +++Q L  AG+V++  G  G
Sbjct: 2   LSKTAEYALRAVVLLASQPDKPFSADVIAGKTKAPRRYLTRVMQDLAAAGLVQSRPGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  + +  D ++ILDV+ A +    +  C    K    L   C L + L KA  A     
Sbjct: 62  GYEMAKGIDAVSILDVINAVDPVERIRSCPLGLKSHTEL---CPLHAELDKAYAATEKAF 118

Query: 123 TQYSIECLVRNRSSIKKIFN 142
              +++ L+ + + I  + +
Sbjct: 119 RNVTLKQLIESANPIVPLCD 138


>gi|149369729|ref|ZP_01889581.1| transcriptional regulator, rrf2 family protein [unidentified
           eubacterium SCB49]
 gi|149357156|gb|EDM45711.1| transcriptional regulator, rrf2 family protein [unidentified
           eubacterium SCB49]
          Length = 138

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T YGI+ L Y A      P +I+ IA +  IS+ FL  IL  L KAG++ + +G+ 
Sbjct: 2   LSRKTKYGIKALTYLAQQEGNDPTQIAVIAVSENISQKFLESILLTLRKAGVLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L + AD I I  + +  E    +  C    F     DCP   +C + +++ +  ++
Sbjct: 62  GGYYLLKDADSIKISQIYRVLEGPIAMVPCVSLNFYEKCDDCPDEDTCSVHNLMIQVRDS 121

Query: 118 FFDVLTQYSIECLVRNR 134
             ++L   ++  ++  +
Sbjct: 122 TLNILENTTLADIISEQ 138


>gi|58579092|ref|YP_197304.1| hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417718|emb|CAI26922.1| Hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 160

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M  T R  Y I  ++  A       +   P R+S IA    +SE +L +++  L K G++
Sbjct: 5   MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
              +G  GG  L      IT+  ++++  E+  +  C  +          C    +    
Sbjct: 65  NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124

Query: 115 LNAFFDVLTQYSIECLVRNR 134
            N   D L   S+E +V N 
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144


>gi|229098964|ref|ZP_04229899.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|229105131|ref|ZP_04235782.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
 gi|229117993|ref|ZP_04247353.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228665442|gb|EEL20924.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228678312|gb|EEL32538.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
 gi|228684462|gb|EEL38405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 151

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151


>gi|296140570|ref|YP_003647813.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Tsukamurella paurometabola DSM 20162]
 gi|296028704|gb|ADG79474.1| transcriptional regulator, BadM/Rrf2 family [Tsukamurella
           paurometabola DSM 20162]
          Length = 159

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M + +  ++   V +     ++    P   S++AE+  +   +L K LQ L +AGI E++
Sbjct: 1   MRMNEGVEWAAHVCVLLHWLDEGDLTPVPASRLAESYDLPPAYLGKQLQALARAGITESL 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSV 110
            GRRGG+RL R   +IT++DVV A E       C         S          CG+   
Sbjct: 61  PGRRGGIRLARSTAEITLMDVVSAIEGPSDAFACTEIRQRGMNSDNPRSDFTAPCGIAHA 120

Query: 111 LRKALNAFFDVLTQYSIECLVR 132
           +R A  ++   L   SI  L  
Sbjct: 121 MRGAELSWRRELAATSIADLAA 142


>gi|229019725|ref|ZP_04176531.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229025951|ref|ZP_04182341.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228735352|gb|EEL85957.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228741570|gb|EEL91764.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 151

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151


>gi|78187526|ref|YP_375569.1| hypothetical protein Plut_1672 [Chlorobium luteolum DSM 273]
 gi|78167428|gb|ABB24526.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
           DSM 273]
          Length = 177

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  L K TDY +R L+  A           IA    I   FL ++LQ L++  +V +  G
Sbjct: 21  MKVLNKNTDYAVRALLSLAGSQGVYLSAKTIATEQDIPYQFLRRLLQELIRHRLVVSREG 80

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG +L R  D I + ++++  +    V+EC    K+ C     C L   + +      
Sbjct: 81  ASGGFKLDRDPDGIALRELIEIFQGPVQVSECLFRKKL-CGNRARCVLRHQILRIEQVVR 139

Query: 120 DVLTQYSIECLVRN 133
                 +I  L+ +
Sbjct: 140 AEFENITIGSLLGD 153


>gi|206602829|gb|EDZ39310.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
           Group II '5-way CG']
          Length = 141

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R +Y +R L+  A+  D     +QIA    I + FL +IL  LVK GIVE+ RG R
Sbjct: 4   RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G   L +  + I++  ++   E      +                + ++     +    V
Sbjct: 64  GKYCLGQRPEDISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115

Query: 122 LTQYSIECLV----RNRSSIKKIF 141
           L +++++  V    ++RS  + +F
Sbjct: 116 LDRFTLDAFVEAAGKDRSETRPMF 139


>gi|117926693|ref|YP_867310.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610449|gb|ABK45904.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
           MC-1]
          Length = 153

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             +K+  Y I  ++  A +    P +I ++     + + +L +++Q LVKAGI++ +RG 
Sbjct: 3   KFSKKLLYAIEAVVDIAYNSGGEPVQIREVTSRQGVPQRYLEQVMQRLVKAGILKGIRGP 62

Query: 61  RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L +   +I++ D+ + A E          S     P+ G+  +  V  +      
Sbjct: 63  KGGYLLAKERSKISVGDIARVAMELGDEGNNGLPSDVATGPI-GTAVIRPVWGEFQEEIL 121

Query: 120 DVLTQYSIECL 130
            ++ + S+E L
Sbjct: 122 VMMDKVSVEDL 132


>gi|228993237|ref|ZP_04153158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
 gi|228999285|ref|ZP_04158865.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|229006840|ref|ZP_04164473.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228754462|gb|EEM03874.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228760482|gb|EEM09448.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|228766563|gb|EEM15205.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
          Length = 151

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   +++ LV N +S IKK
Sbjct: 128 AMESVLANVTVQQLVTNLQSKIKK 151


>gi|169805235|gb|ACA83733.1| putative transcriptional regulator [Rhodothermus marinus]
          Length = 150

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++      +  +   A  N      + +++     S   L +I+  L  AG+ + +RG  
Sbjct: 8   ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 67

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGVRL RPA +IT+ ++++  +    +  C     + C     C L ++          +
Sbjct: 68  GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 126

Query: 122 LTQYSIECLVR 132
           L + ++  L+ 
Sbjct: 127 LAETTLADLIH 137


>gi|124514277|gb|EAY55791.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
           rubarum]
          Length = 141

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++R +Y +R L+  A+  D     +QIA    I + FL +IL  LVK GIVE+ RG R
Sbjct: 4   RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G   L +  ++I++  ++   E      +                + ++     +    V
Sbjct: 64  GKYCLGQRPEEISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115

Query: 122 LTQYSIECLV----RNRSSIKKIF 141
           L +++++  V    ++R+  + +F
Sbjct: 116 LDRFTLDAFVEAAGKDRNETRPMF 139


>gi|190890245|ref|YP_001976787.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|218507620|ref|ZP_03505498.1| putative transcriptional regulator protein [Rhizobium etli Brasil
           5]
 gi|190695524|gb|ACE89609.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 166

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            +GG RL + A++I++LD++ A E       C     +   P+        C +++ + +
Sbjct: 61  PKGGYRLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + SI  L
Sbjct: 121 AERVYRAELAKTSIADL 137


>gi|238926961|ref|ZP_04658721.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238885195|gb|EEQ48833.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 147

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A       P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGIASMVFLARSYGTSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L RP   IT  +++ A E    + E   S       +       +        
Sbjct: 61  GSQGGYQLARPPHAITAYEILSAIE--IALIERTGSASEKMEKLNFILSRDLFDVLDQNI 118

Query: 119 FDVLTQYSIECLV 131
            + L   ++E L+
Sbjct: 119 HNTLNAVTLEDLL 131


>gi|125974067|ref|YP_001037977.1| BadM/Rrf2 family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|125714292|gb|ABN52784.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           thermocellum ATCC 27405]
          Length = 151

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  Y +  ++  A   +N     +  I+E   IS++FL ++   L KA IV + +
Sbjct: 4   MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 63

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
           G +GG +L R   QIT+LDV+ + E    + E       D  P +     +SV       
Sbjct: 64  GVQGGYQLTRTPSQITVLDVLLSVE--VSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L+  +I  LV      K 
Sbjct: 122 IKQTLSTITIADLVAEAEKHKD 143


>gi|118479660|ref|YP_896811.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|228948230|ref|ZP_04110514.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229032151|ref|ZP_04188127.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|229163495|ref|ZP_04291446.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|229175215|ref|ZP_04302731.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
 gi|229186740|ref|ZP_04313898.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|118418885|gb|ABK87304.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
 gi|228596753|gb|EEK54415.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228608351|gb|EEK65657.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
 gi|228620064|gb|EEK76939.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|228729157|gb|EEL80157.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|228811588|gb|EEM57925.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 151

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  +VL   +++ LV N  S  K
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150


>gi|65321873|ref|ZP_00394832.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|228903025|ref|ZP_04067164.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
 gi|228910330|ref|ZP_04074146.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
 gi|228917145|ref|ZP_04080703.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923250|ref|ZP_04086540.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228929554|ref|ZP_04092573.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935816|ref|ZP_04098628.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228941684|ref|ZP_04104231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228954776|ref|ZP_04116797.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228967601|ref|ZP_04128624.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974611|ref|ZP_04135177.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981206|ref|ZP_04141506.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|228987757|ref|ZP_04147868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229048212|ref|ZP_04193781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
 gi|229072011|ref|ZP_04205221.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|229081759|ref|ZP_04214252.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
 gi|229093603|ref|ZP_04224704.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|229111969|ref|ZP_04241513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
 gi|229124071|ref|ZP_04253263.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
 gi|229129791|ref|ZP_04258758.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229141238|ref|ZP_04269777.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|229147065|ref|ZP_04275425.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229152700|ref|ZP_04280887.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
 gi|229158115|ref|ZP_04286184.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|229180772|ref|ZP_04308110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|229192705|ref|ZP_04319664.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|229198656|ref|ZP_04325357.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
 gi|228584815|gb|EEK42932.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
 gi|228590795|gb|EEK48655.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|228602750|gb|EEK60233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|228625344|gb|EEK82102.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|228630763|gb|EEK87405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
 gi|228636453|gb|EEK92923.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228642279|gb|EEK98571.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228653707|gb|EEL09578.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228659373|gb|EEL15021.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
 gi|228671533|gb|EEL26833.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
 gi|228689812|gb|EEL43618.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228701604|gb|EEL54097.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
 gi|228711170|gb|EEL63135.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|228723199|gb|EEL74575.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
 gi|228772031|gb|EEM20486.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228778406|gb|EEM26673.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|228785014|gb|EEM33027.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228792092|gb|EEM39671.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228804896|gb|EEM51494.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817896|gb|EEM63974.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228823873|gb|EEM69693.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830133|gb|EEM75751.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228836456|gb|EEM81807.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228842563|gb|EEM87653.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228849282|gb|EEM94120.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
 gi|228856618|gb|EEN01139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
          Length = 151

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  +VL   +++ LV N  S  K
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150


>gi|302338626|ref|YP_003803832.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635811|gb|ADK81238.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 126

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T+Y +  ++  A + D    +  +AE   +S  +L KIL  LVK G + +  G 
Sbjct: 1   MKYTKATNYALHTMLIMAKNADKRISVQHLAEKQDLSPTYLSKILTKLVKGGFISSFSGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +  + I+ LD++   E    + EC  + + +C       +  V+  A      
Sbjct: 61  HGGYALPQNWENISFLDIIHCMEGKSSLFECCLNEEEEC------SIKKVMLLAEEKMEA 114

Query: 121 VLTQYSIECLVR 132
            L    I  L+R
Sbjct: 115 DLKGTRISDLIR 126


>gi|223040640|ref|ZP_03610910.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
           RM3267]
 gi|222878098|gb|EEF13209.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
           RM3267]
          Length = 134

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK ++Y +  L+Y A   D P+ +  ++    IS+ FL KILQ L + GI+ + +G 
Sbjct: 1   MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILISFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG  L +    I+I  V+++ E+    V EC  +           C +  +     +  
Sbjct: 60  NGGFMLAQKPGDISIKRVIESAEKRKMAVFECSISQEGCSSSKNRMCQIWPMFSALQSRI 119

Query: 119 FDVLTQYSIECLVRN 133
            D L   ++  +++ 
Sbjct: 120 DDFLDTITLANIMKK 134


>gi|228960772|ref|ZP_04122410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798907|gb|EEM45883.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 151

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGIHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 69  -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  +VL   +++ LV N  S  K
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMK 150


>gi|251798602|ref|YP_003013333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247546228|gb|ACT03247.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 144

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I  D  N    IA +   + + + ++L  L KAG+V+ VR  
Sbjct: 1   MKISSRFSIAVHILSLLEISKDAHNTSEWIAGSVNTNPVIIRRLLGQLKKAGLVQ-VRAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LD+ +A +  E   +         DCP+  S    L  VL+K+ +
Sbjct: 60  TGGSYLTKEMSEITLLDIFRAVDVVEEGQLFHIHEGPNPDCPVGASIQVVLELVLKKSQD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL Q ++E LV +
Sbjct: 120 AMESVLAQITLEELVAD 136


>gi|72160826|ref|YP_288483.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX]
 gi|71914558|gb|AAZ54460.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX]
          Length = 155

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TD  +R++M  A+  +       +A    +      K +  L + G+VE  RGR
Sbjct: 1   MRLTTFTDLSLRIVMRLAVAGEETLTTRSVAGMLAVPYTHAAKAVARLSEMGLVEARRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL       T+  +V+  E S  V  C       CPL  +C L   LR+A  AFF 
Sbjct: 61  GGGLRLTPAGRAATVGSIVRELEGSKDVVAC--EDDPPCPLRAACRLRGELRRAQEAFFA 118

Query: 121 VLTQYSIECLVRNRSS 136
            L + ++E LV + + 
Sbjct: 119 ALDEVTVESLVASPTG 134


>gi|317050737|ref|YP_004111853.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
           S5]
 gi|316945821|gb|ADU65297.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
           S5]
          Length = 147

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           K TDY +R+ +Y A   +   ++S+I +   +++  + K++Q L + G+V +  G+ GG+
Sbjct: 7   KETDYALRIAVYLANKQER-VKVSEICQKLNLTKPVVIKVIQMLKRHGLVASKTGKYGGL 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            L  P ++I++ DV+ +      +  C       C L   C ++         F   L  
Sbjct: 66  SLAHPPEEISVYDVLVSMSADHSINTCLEDASF-CQLQPICRISRFFCDIQRDFNARLKS 124

Query: 125 YSIECLVRNRSSIKKI 140
             +  L  +   ++ +
Sbjct: 125 VKLAGLTFDDEQLEAL 140


>gi|229087063|ref|ZP_04219215.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
 gi|228696256|gb|EEL49089.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
          Length = 143

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 61  -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 119

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A  +VL   +++ LV N  S
Sbjct: 120 AMENVLANVTVQQLVTNLQS 139


>gi|30264575|ref|NP_846952.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42783680|ref|NP_980927.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47530042|ref|YP_021391.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187398|ref|YP_030650.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49481494|ref|YP_038559.1| Rrf2 family protein; transcriptional regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140996|ref|YP_085834.1| Rrf2 family protein; transcriptional regulator [Bacillus cereus
           E33L]
 gi|165871451|ref|ZP_02216098.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167635603|ref|ZP_02393915.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167641682|ref|ZP_02399927.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170688290|ref|ZP_02879500.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170708378|ref|ZP_02898822.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177653127|ref|ZP_02935414.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190566975|ref|ZP_03019891.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034358|ref|ZP_03101767.1| rrf2 family protein [Bacillus cereus W]
 gi|196039250|ref|ZP_03106556.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|196044861|ref|ZP_03112095.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|206969656|ref|ZP_03230610.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206977724|ref|ZP_03238615.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217961991|ref|YP_002340561.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218235575|ref|YP_002369303.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218899663|ref|YP_002448074.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218905732|ref|YP_002453566.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222097974|ref|YP_002532031.1| rrf2 family protein; transcriptional regulator [Bacillus cereus Q1]
 gi|225866481|ref|YP_002751859.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227817288|ref|YP_002817297.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229601070|ref|YP_002868788.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254687004|ref|ZP_05150862.1| RRF2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724567|ref|ZP_05186350.1| RRF2 family protein [Bacillus anthracis str. A1055]
 gi|254736610|ref|ZP_05194316.1| RRF2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741648|ref|ZP_05199335.1| RRF2 family protein [Bacillus anthracis str. Kruger B]
 gi|254754754|ref|ZP_05206789.1| RRF2 family protein [Bacillus anthracis str. Vollum]
 gi|254757586|ref|ZP_05209613.1| RRF2 family protein [Bacillus anthracis str. Australia 94]
 gi|296504983|ref|YP_003666683.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|301056017|ref|YP_003794228.1| Rrf2 family protein; putative transcriptional regulator [Bacillus
           anthracis CI]
 gi|30259233|gb|AAP28438.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|42739609|gb|AAS43535.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|47505190|gb|AAT33866.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181325|gb|AAT56701.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49333050|gb|AAT63696.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974465|gb|AAU16015.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus E33L]
 gi|164712748|gb|EDR18278.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167510389|gb|EDR85790.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167529023|gb|EDR91778.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170126753|gb|EDS95636.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170667796|gb|EDT18549.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172081651|gb|EDT66722.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190561966|gb|EDV15935.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992900|gb|EDX56859.1| rrf2 family protein [Bacillus cereus W]
 gi|196024349|gb|EDX63022.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|196029877|gb|EDX68478.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206735344|gb|EDZ52512.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|206744025|gb|EDZ55441.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|217066878|gb|ACJ81128.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218163532|gb|ACK63524.1| rrf2 family protein [Bacillus cereus B4264]
 gi|218536473|gb|ACK88871.1| rrf2 family protein [Bacillus cereus AH820]
 gi|218544856|gb|ACK97250.1| rrf2 family protein [Bacillus cereus G9842]
 gi|221242032|gb|ACM14742.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus Q1]
 gi|225785815|gb|ACO26032.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|227005099|gb|ACP14842.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229265478|gb|ACQ47115.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|296326035|gb|ADH08963.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|300378186|gb|ADK07090.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
           cereus biovar anthracis str. CI]
 gi|324328400|gb|ADY23660.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942291|gb|AEA18187.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 143

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 61  -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  +VL   +++ LV N  S  K
Sbjct: 120 AMENVLANVTVDQLVTNLKSKMK 142


>gi|148265911|ref|YP_001232617.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146399411|gb|ABQ28044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           uraniireducens Rf4]
          Length = 153

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K+T Y ++ ++Y A +++  P  I+ +A    I + FL  IL  L   GI+++ +G+ 
Sbjct: 2   ISKKTKYALKAIIYLARVYDKGPILIADLARDERIPKKFLELILLTLKNNGILQSRKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I++  V++  E       C +        +C    +CG+  +++   +A
Sbjct: 62  GGYYLGKSPKDISMGTVIRILEGPLAPVPCVSETAYAKCDECVDERTCGIRLMMKDVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
              +L   ++  ++      ++
Sbjct: 122 MAKILDGTTLADVLERTEKAEQ 143


>gi|30022586|ref|NP_834217.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|29898144|gb|AAP11418.1| RRF2 family protein [Bacillus cereus ATCC 14579]
          Length = 145

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 3   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 62

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  ++IT+LDV KA E  E   +     +  I+CP+  +    L  +L +A  
Sbjct: 63  -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 121

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  +VL   +++ LV N  S  K
Sbjct: 122 AMENVLANVTVDQLVTNLKSKMK 144


>gi|146299258|ref|YP_001193849.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146153676|gb|ABQ04530.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 136

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L Y A   N+ P +I++IA++  IS  FL  IL  L  +G +   +G+ 
Sbjct: 2   LSKKTKYGIKALTYLARRENNEPVQIAEIAKSEHISIKFLESILLLLRNSGFLGAKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I++  V +  E    +  C    F     DC    +C    ++ +  + 
Sbjct: 62  GGYYLIKDPKDISMAKVYRILEGPIALLPCASHNFYEKCDDCDDESTCAARRLMTEVRDN 121

Query: 118 FFDVLTQYSIECLV 131
              +L   S+  + 
Sbjct: 122 TLKILESNSLADIA 135


>gi|325971574|ref|YP_004247765.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Spirochaeta sp. Buddy]
 gi|324026812|gb|ADY13571.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy]
          Length = 138

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R  YG+R+L+  A H N+ P  ++ +A+   +SE +L ++   L + G + +V+G
Sbjct: 1   MKISTRGRYGLRLLVDIAEHSNEGPIALTVVAKRQDLSEKYLQQVALLLTRGGFLTSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L R    + I DV+   E +    E     +    +     L  V +K      
Sbjct: 61  SGGGYLLERSPASMMIYDVLDLLEGNICFEEPVQGEENA--IERVIRLH-VYQKLDQEVK 117

Query: 120 DVLTQYSIECLVR 132
            V    ++  + +
Sbjct: 118 KVFEGLTLADVTK 130


>gi|268317560|ref|YP_003291279.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
           DSM 4252]
 gi|262335094|gb|ACY48891.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
           DSM 4252]
          Length = 144

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++      +  +   A  N      + +++     S   L +I+  L  AG+ + +RG  
Sbjct: 2   ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGVRL RPA +IT+ ++++  +    +  C     + C     C L ++          +
Sbjct: 62  GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 120

Query: 122 LTQYSIECLVR 132
           L + ++  L+ 
Sbjct: 121 LAETTLADLIH 131


>gi|307720665|ref|YP_003891805.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978758|gb|ADN08793.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           autotrophica DSM 16294]
          Length = 134

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +   + P     ++    IS+ FL KILQ L KA I+ + +G 
Sbjct: 1   MLITRASEYAILSLILLS-KAESPMDSDTLSRELSISKSFLAKILQSLAKAQILNSYKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
            GG  L +    I +L+V    E     V EC  S + DCP     +C +   L K    
Sbjct: 60  NGGFALKKEPQDINMLEVASCVEGKAPAVFECAPSLE-DCPSEKASTCSIWPFLHKLQGK 118

Query: 118 FFDVLTQYSIECLVRN 133
               L   ++  L+ +
Sbjct: 119 IDLFLANLTLADLLND 134


>gi|313672403|ref|YP_004050514.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939159|gb|ADR18351.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 136

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T ++ Y I  L+Y +  N  P   S+I+ +  I + FL   L  L   GI+++ +G 
Sbjct: 1   MQTTAQSIYAIYALVYISYRN-KPVNPSEISNSSSIPKRFLEITLNKLKHHGILKSKKGP 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +P ++I++ D++ ATE +  + +C         L   C     L        +
Sbjct: 60  NGGFILSKPPEKISLYDILSATESNLSLFDCEK------HLPTGCHFKQFLESINCQHLN 113

Query: 121 VLTQYSIECLVRNRSS 136
           +L   ++E + +  S 
Sbjct: 114 LLKSITLEDIRKQESQ 129


>gi|167462502|ref|ZP_02327591.1| rrf2 family protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 142

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   A++++       +A +   + + + +I+  L KAG+V+ VR  
Sbjct: 1   MKISSRFSVGVHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +  D+IT+LD+ KA +  E   + +       +CP+  +    L  VL +A  
Sbjct: 60  TGGAYLLKSLDEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQE 119

Query: 117 AFFDVLTQYSIECLV 131
           A   VL   +++ LV
Sbjct: 120 AMEQVLKDITMDELV 134


>gi|255658792|ref|ZP_05404201.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
 gi|260849190|gb|EEX69197.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
          Length = 148

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 11/137 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  + Y A +     P  I  I+E   IS+++L ++   L +A +V +++
Sbjct: 1   MKISAKGRYGLAAMTYLARNYAAGTPITIVSISEKLGISKIYLEQVFSLLKRARLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE----ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
           G +GG +L RP  +IT  D++ + E    E    A      ++D   + SC  T +    
Sbjct: 61  GSQGGYQLARPPREITPYDILSSIELSLMEKTAPAAQEKMPELD-RALASCVFTPL---- 115

Query: 115 LNAFFDVLTQYSIECLV 131
             A    L+  S++ ++
Sbjct: 116 DEAIQKALSAISLDDIL 132


>gi|315924880|ref|ZP_07921097.1| Rrf2 family transcriptional regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621779|gb|EFV01743.1| Rrf2 family transcriptional regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 148

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  ++  +      +   ++ +AE   IS+++L +I   L ++G+V +V+
Sbjct: 1   MRISAKGRYGIASMIELSWMSREGHHVPVAILAENLGISKIYLEQIFSLLKRSGLVASVK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L +PA +I++ +++KA E+  F   E     +   P + S     V R     
Sbjct: 61  GAQGGYHLAKPASEISVYEILKALEQILFEPTESSVDERA--PAIESVMQKDVFRPLDAT 118

Query: 118 FFDVLTQYSIECLVRN 133
              +L +  +  L+ +
Sbjct: 119 IETLLAKIRLSDLLED 134


>gi|255035951|ref|YP_003086572.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254948707|gb|ACT93407.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 145

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR + Y A  ++      I +IA      E FL KILQ L K G+V + +G 
Sbjct: 4   FSKTCEYAIRAVFYIAQKSEEGQKVGIREIALHINSPEPFLAKILQKLSKDGLVLSSKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q ++ D+V+A E       C       C     C L +  +K  N    
Sbjct: 64  HGGFYLDPGGLQRSLADIVQAIEGDSIFNGCGMGLSY-CSQANPCPLHNDFKKIRNQIVI 122

Query: 121 VLTQYSI----ECLVRNRSSIKK 139
           +L   SI    E L++ + ++ K
Sbjct: 123 MLRNTSIGKFNEGLIQGQLTLNK 145


>gi|218678083|ref|ZP_03525980.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           894]
          Length = 166

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  I  +   + +        + +A+   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAQFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
            +GG RL +   +I++LD++ A E       C        +   D      C +++ + +
Sbjct: 61  PKGGYRLAKAPAEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFATPCNISAAMLR 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + SI  L
Sbjct: 121 AERVYRAELAKTSIADL 137


>gi|326203774|ref|ZP_08193637.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
 gi|325986214|gb|EGD47047.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           papyrosolvens DSM 2782]
          Length = 148

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  ++  A    N     +  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MRISSKGRYGIASMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVSSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L +  ++IT  D+++A E S F      S       +     + V  K   + 
Sbjct: 61  GSQGGYQLTKSPEKITAYDILQAVEISLFEVT-ERSVSRQAEGIEKSITSLVWSKMDKSI 119

Query: 119 FDVLTQYSIECLVRNRS 135
            +VL   ++  LV    
Sbjct: 120 SEVLKNVTLTDLVDEAE 136


>gi|157693884|ref|YP_001488346.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682642|gb|ABV63786.1| Rrf2 family transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 142

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++          IA +   + + + +I+  L KAG++ T  G+
Sbjct: 1   MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG +L R  D+IT+LDV KA E  +   + +   S   DCP+  +    L  +L +A +
Sbjct: 61  -GGSQLNRSEDEITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119

Query: 117 AFFDVLTQYSIECLVR 132
           A   VL +  +  L +
Sbjct: 120 AMEQVLAEIKLSELTQ 135


>gi|296272138|ref|YP_003654769.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096313|gb|ADG92263.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter
           nitrofigilis DSM 7299]
          Length = 133

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LTK+++Y +  L+  A  +D    + +++    I + FL KI+Q L K  IV + RG 
Sbjct: 1   MLLTKKSEYALLSLISIA-KSDKAKNVDELSRELRIPKSFLAKIMQNLAKNEIVISQRGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG  L +P DQ+TI  +  A EE    V EC  S    CP      C +  +L      
Sbjct: 60  NGGFILAKPYDQLTIFSITAAAEEKIPSVFECAPSMD-SCPSESGSLCSIWPLLNNLQGK 118

Query: 118 FFDVLTQYSIECLVR 132
             + L + +++ + +
Sbjct: 119 INEFLEELTLKDIAQ 133


>gi|86356200|ref|YP_468092.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280302|gb|ABC89365.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|327192636|gb|EGE59577.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 166

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            RGG +L + A++I++LD++ A E       C     +   P+        C +++ + +
Sbjct: 61  PRGGYKLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + SI  L
Sbjct: 121 AERVYRAELAKTSIADL 137


>gi|295401043|ref|ZP_06811017.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112181|ref|YP_003990497.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294976836|gb|EFG52440.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217282|gb|ADP75886.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 146

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   A+  +       IA +   + + + +++  L KAG V+   G 
Sbjct: 1   MKISSRFTVAVHILALLALEKNAHCTSEWIAGSVNTNPVVVRRVIGQLKKAGFVQVRPG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LD+ +A E  E   + +        CP+  +    L  +L +A  
Sbjct: 60  TGGAFLTKDTQEITLLDIYRAVEVVEEGELFQIHEHPNPQCPVGANIQAVLEVILHRAQA 119

Query: 117 AFFDVLTQYSIECLV 131
           A  +VL +  +  +V
Sbjct: 120 AMENVLQEIRLHDIV 134


>gi|213029354|ref|ZP_03343801.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 85

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M LT +  Y +  ++  A++++  P  ++ I+E   IS  +L ++   L K G+V +VRG
Sbjct: 1  MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60

Query: 60 RRGGVRLCRPADQITILDVV 79
            GG  L + A  I + +V+
Sbjct: 61 PGGGYLLGKDAGSIAVGEVI 80


>gi|288961953|ref|YP_003452263.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914233|dbj|BAI75719.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 157

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+K TDY I VL   A H    + ++ +A+   +    + K+++ +  AG+  + RG  
Sbjct: 3   RLSKLTDYAIVVLSEMARHVGTVHTVAHLADRTGVPAPTVAKLMKAMTPAGLTTSQRGAA 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L RPA  I+I +++ A +    +  C       C +   C +     K   A    
Sbjct: 63  GGYALSRPAAAISIAEIITALDGPIALTACVDGADSQCGVEQLCPMRGGWEKVNRAIRGA 122

Query: 122 LTQYSIECLVR 132
           L + ++  ++ 
Sbjct: 123 LEEVTLADMMA 133


>gi|149177719|ref|ZP_01856319.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
 gi|148843369|gb|EDL57732.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
          Length = 157

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R +++ A     P    QIA+A  + + +L K+LQ L ++ +V + RG  G
Sbjct: 2   FSQTVEYALRAIVHLADQAPNPCTTEQIAKATKVPQAYLSKVLQSLRQSSVVHSQRGIGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ L +  +++++L+VV A +    +  C    K        C L   L  A+       
Sbjct: 62  GISLVKTPEELSLLEVVNAVDPICRIKTCPLGLKG--HGANLCPLHRKLDDAMRETETAF 119

Query: 123 TQYSIECLVRNRSSIKKIFNA 143
            + ++  ++ + +S   + N 
Sbjct: 120 AETTLAQILLSSTSSYPLCNE 140


>gi|300813621|ref|ZP_07093949.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512257|gb|EFK39429.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 135

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY  R+  + A H +       IAE C ++E F  +IL+ L  AGI    RG 
Sbjct: 1   MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-----VGSCGLTSVLRKAL 115
           +GG  L RP ++IT+  ++ A E    +  C A H   C       V  C   S L    
Sbjct: 61  KGGYGLKRPKEEITLYQIICAIEGPTVINRCLA-HDQYCNRKTIEGVKHCKFHSKLFHIQ 119

Query: 116 NAFFDVLTQYSIE 128
            +  ++    +I+
Sbjct: 120 KSIINMFNSETID 132


>gi|210621787|ref|ZP_03292816.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
 gi|210154551|gb|EEA85557.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
          Length = 148

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T+ +DY IR++   A+ ++    I  I E   + E F +KI++ L K+ IVE  RG 
Sbjct: 1   MLFTRESDYAIRIVR--ALKDEEKLTIKTICERELLPEAFAYKIIKKLAKSEIVEIKRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +  +++T+ DV+ A +  F V EC  S        G C +   L    N    
Sbjct: 59  NGGYSLKKDLNELTLYDVIIAVDPDFAVMECIHSFCNRNGSNGMCKVHKELIYIQNQVEM 118

Query: 121 VLTQYSIECLVRNRS 135
           +L + S+E ++ +R+
Sbjct: 119 LLKRRSLEEILEDRN 133


>gi|15807906|ref|NP_285565.1| hypothetical protein DR_A0242 [Deinococcus radiodurans R1]
 gi|6460690|gb|AAF12395.1|AE001863_20 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 149

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R  +  A         +++A    +   +LFK++  LV+AG+V   RG+ G
Sbjct: 16  FSQTAEYALRATVMLAEQ-GRALSAAELARLSEVPPPYLFKVMGQLVRAGVVTAQRGKNG 74

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL R A  IT+L+VV A +    +  C             C L   L +        L
Sbjct: 75  GYRLGRAAGDITVLEVVNAVDPLPRIRHCPLGKPE--HERALCPLHRQLDETYAQIEATL 132

Query: 123 TQYSIECL 130
              S+  +
Sbjct: 133 GSRSLAEM 140


>gi|317969579|ref|ZP_07970969.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
           CB0205]
          Length = 142

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M    +T YG+  L+  A         ++S IA+   I E +L +++  L K G++ + R
Sbjct: 1   MPFNAKTRYGLLALIELAGIQAQGGRLQVSVIAQRQGIPERYLEQMMTSLRKGGLLNSSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L RPA  I + + ++  E                  +    L S+  +     
Sbjct: 61  GPKGGYQLARPAADIRLSEALECLEGRSEP------QPPAQQSLEQQVLHSIGTQLQEQR 114

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             +L   ++  L+  R ++ +
Sbjct: 115 LALLESTTLTDLLAQRDALLQ 135


>gi|194015517|ref|ZP_03054133.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012921|gb|EDW22487.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 142

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++          IA +   + + + +I+  L KAG++ T  G+
Sbjct: 1   MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG +L R  D IT+LDV KA E  +   + +   S   DCP+  +    L  +L +A +
Sbjct: 61  -GGSQLNRSEDDITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119

Query: 117 AFFDVLTQYSIECLVR 132
           A   VL +  +  L +
Sbjct: 120 AMEQVLAEIKLSELTQ 135


>gi|76666808|emb|CAJ31186.1| Transcriptional regulator [uncultured sulfate-reducing bacterium]
          Length = 182

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L+ R  Y +R+++  A H   ++    +SQ++    IS  +L +++  L  A ++   
Sbjct: 22  MKLSTRARYALRLMVTLARHTNGDNSVVSLSQVSREAKISRRYLEQLVIGLKNASLIRGR 81

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            G+ GG  L  PADQI I  ++++      + EC    +I C     C    + +     
Sbjct: 82  SGKGGGYCLALPADQIRIRQIIESAIGPINIVECVMQPEI-CLKSDLCECRMLYQLINQR 140

Query: 118 FFDVLTQYSIECLV 131
              VL    +  L 
Sbjct: 141 ITGVLDGLVLSDLA 154


>gi|317132533|ref|YP_004091847.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
 gi|315470512|gb|ADU27116.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
           harbinense YUAN-3]
          Length = 137

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DY +RV+++              I+E   I   FL K+L+ +  A IV + RG
Sbjct: 1   MRVTQESDYALRVIIFLYQRGIGERVEARVISEKENIPLRFLLKLLRKMAAANIVRSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
             GG  + +   +I++ +V++A E   +V +C       C      +C +   L+   + 
Sbjct: 61  SGGGYAIEKQPSEISVREVIEAVEGPIYVNKCLGD-SSQCNLDRTSTCHIHRALQMVQDK 119

Query: 118 FFDVLTQYSIECLVR 132
               L + + E +++
Sbjct: 120 LLANLDELTFEQILK 134


>gi|225018166|ref|ZP_03707358.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
           DSM 5476]
 gi|224949163|gb|EEG30372.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
           DSM 5476]
          Length = 132

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T  +DY +R++ + A   +  +    IAE   ++  F  KIL+ LV AG+V++ +G 
Sbjct: 1   MYITLESDYAVRIMSFLAKRREKLD-AKTIAENTGVTLRFALKILRKLVAAGVVQSFKGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNAF 118
           +GG  + R   +IT+L++++  E  +  + C               C + S+        
Sbjct: 60  QGGYLIARDPSEITLLEIIETVEGRYCFSRCLGEDHECGQWCSGERCKVQSIYSNISALV 119

Query: 119 FDVLTQYSIECLV 131
            + L   + + L+
Sbjct: 120 REQLAGVTFDQLI 132


>gi|258544534|ref|ZP_05704768.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
 gi|258520216|gb|EEV89075.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
          Length = 155

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK ++Y   +L             + +A+   I+     K+L+ L + GI+E++RG  
Sbjct: 3   RITKESEYAFLLLGAILSAEGAARNTATLAKEARIAVPMSGKVLKRLTQQGILESIRGAH 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R A+ +T LDVV+A E    + EC  + + +C L   C  +   ++  +    +
Sbjct: 63  GGYQLARAAESVTALDVVEAIEGGPELVEC-TNGETNCALAEHCQFSPFWQELNDDIRAM 121

Query: 122 LTQYSIECLVR 132
           L   ++  + R
Sbjct: 122 LAAKTLADMQR 132


>gi|210610732|ref|ZP_03288592.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
 gi|210152296|gb|EEA83303.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
          Length = 158

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR++ Y A   +     S++A    I E ++ KI + L +A I+    G 
Sbjct: 19  MQLKITTDYAIRIVYYLACRGE-VITASELAYELKIPESYIPKITKKLKEANIITACEGI 77

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
           +GG  L +  + I++ D++ +TE +  +  C       C       C +  +L      +
Sbjct: 78  KGGYSLVKKTEDISLFDIISSTEVTMKLNRCLEEDGF-CSRNATEHCKVHKILLDVQQTY 136

Query: 119 FDVLTQYSIECLVR 132
            ++L    +  +++
Sbjct: 137 DNLLKGIKVSEIIK 150


>gi|153815370|ref|ZP_01968038.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756]
 gi|317500841|ref|ZP_07959053.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089263|ref|ZP_08338165.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847229|gb|EDK24147.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756]
 gi|316897721|gb|EFV19780.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405815|gb|EGG85344.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 136

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 4/138 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR ++Y           ++I+    I   +L K+L  L KA  +    G 
Sbjct: 1   MQLNVTTDYAIRTVLYLGQCK-KIASATEISNEMGIPRGYLEKVLSKLKKAEYISADLGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
           RGG RL +    IT+ DV++  E +  +  C       C       C +     K     
Sbjct: 60  RGGYRLNKTLKDITLGDVIRLMESTTKINRCLEDDAY-CSRKAVDFCAVRRYYAKVQEKL 118

Query: 119 FDVLTQYSIECLVRNRSS 136
                  S++ ++    +
Sbjct: 119 ETQFFSISLKEILEQEGA 136


>gi|269793340|ref|YP_003318244.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100975|gb|ACZ19962.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 142

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             ++ T   +   +  +          ++A     SE  L K++Q L +AGI+ +  G  
Sbjct: 6   RFSEATSIALHACLLLSAPGAGRMTSGELASRIGASEAHLSKVVQHLTRAGILRSKSGPG 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GGV L     ++ +LDV +A E       C    K  CP  G C    ++ +  +   D 
Sbjct: 66  GGVELAADPSRLKLLDVYEAMEGKSSKGGC-PLGKGLCPFGGRCLFGGLMGRVEDQVLDF 124

Query: 122 LTQYSIECLVRNRSS 136
           L + ++    +    
Sbjct: 125 LARTTLGDFWKGERQ 139


>gi|269215941|ref|ZP_06159795.1| Rrf2 family protein [Slackia exigua ATCC 700122]
 gi|269130200|gb|EEZ61278.1| Rrf2 family protein [Slackia exigua ATCC 700122]
          Length = 138

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +RTDY  R ++  A  ND     ++++AE   I   F   I   LV AG++   RG
Sbjct: 1   MDLNRRTDYACR-MIRAAYKNDGKVISVTKVAEQEGIPYAFARSIQNDLVHAGLLRAERG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG+ L       T+L V++  +    +  C    +  C     C   +V + A +   
Sbjct: 60  ARGGLALACDPSTTTLLHVLECVQGPISMTACTNDERF-CDRRDGCEFHAVWKHAESMLK 118

Query: 120 DVLTQYSIECLVRNRSSIKK 139
                 +++ L R+  + ++
Sbjct: 119 AYYASITLDDLFRHGRNPRR 138


>gi|218672764|ref|ZP_03522433.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 166

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            RGG RL +P ++I++LD++ A E       C     +   P+        C +++ + +
Sbjct: 61  PRGGYRLAKPPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCTISAAMLR 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + SI  L
Sbjct: 121 AERIYRAELAKTSIADL 137


>gi|291278641|ref|YP_003495476.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
           desulfuricans SSM1]
 gi|290753343|dbj|BAI79720.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
           desulfuricans SSM1]
          Length = 139

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T ++ Y I  +   A++ D   +   IA+   I + FL   L  L   GIV + +G 
Sbjct: 1   MNVTSKSIYAIIAVYELALNKDKFIKSDVIAKKYNIPKRFLEITLSELKTNGIVISKKGG 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L +  ++I+I D++  TE    V  C    +       +C   +V          
Sbjct: 61  GGGFALKKLPEEISIFDIITITENDLKVFNCSKFLEK-----STCNTFTVFENLNTEIIS 115

Query: 121 VLTQYSIECLVRNRS 135
           +L   +I+ ++   +
Sbjct: 116 LLKNKTIQDIINENT 130


>gi|290962918|ref|YP_003494100.1| hypothetical protein SCAB_86361 [Streptomyces scabiei 87.22]
 gi|260652444|emb|CBG75577.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 133

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 14  LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +M  A+ +        QIA++  +    + K +  L   G++E  RGR GG+ L      
Sbjct: 1   MMRLAVVDGAELLTTRQIADSMNVPYTHMAKAIAQLQHLGVIEARRGRNGGLTLTDAGRA 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
             + ++V+  E+      C       CPL G+C L   LR+A  AF+  L + ++  LV 
Sbjct: 61  APVGNLVRTLEQDREAVVC--EGDTPCPLSGACRLRRALREAQEAFYSSLDKVTVGDLVA 118

Query: 133 NRSS 136
           + + 
Sbjct: 119 SPTG 122


>gi|94985327|ref|YP_604691.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94555608|gb|ABF45522.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           geothermalis DSM 11300]
          Length = 148

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+ RT   + +L     + D  +    +A +  +  + + ++   L  AG+VET RG+ 
Sbjct: 10  KLSTRTAMAVHILTLVGANPDVAHSSEWLAGSLGVHPVMVRQVTSRLRAAGLVETRRGKA 69

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
           G +RL RPA  +T+LDV +A E+   +    A     CP+       L  V  +A  AF 
Sbjct: 70  G-LRLTRPASAMTLLDVYRAVEDGDALLALHARPNPSCPVGSGIQAVLEDVFEEARTAFE 128

Query: 120 DVLTQYSIECLVRN 133
             L   ++  ++  
Sbjct: 129 RSLAARTVADVMAR 142


>gi|260061024|ref|YP_003194104.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
           HTCC2501]
 gi|88785156|gb|EAR16325.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
           HTCC2501]
          Length = 143

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K   Y I+ ++Y  +H+  P +I    + E   +SE +L KILQ L +  I+ +++GR
Sbjct: 2   ISKTAKYAIKAVIYLGLHSSEPKKILTRDMYEQIHVSESYLAKILQVLSRHNIISSIKGR 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L       T++D+V+  +   +V  C      +C     C L  ++ K    F  
Sbjct: 62  NGGFYLSEENKNHTLMDIVRVVDGGQYVESCVLGIS-NCNSENPCALHDLVGKGKTEFNR 120

Query: 121 VLTQYSIECLVRN 133
           VL + +I+ L+ +
Sbjct: 121 VLEEVTIKKLIAS 133


>gi|310826117|ref|YP_003958474.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308737851|gb|ADO35511.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 148

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  ++  A  +       +  IAE   +S+++L ++   L +AG+V +V+
Sbjct: 1   MRISAKGRYGLAAMIAIAQGDFEGDYVPVIVIAEKLGLSKIYLEQVFSLLKRAGLVNSVK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----- 113
           G +GG RL R  DQI   +++ A E      +    +        S  +   ++K     
Sbjct: 61  GAQGGYRLTREPDQINAHEILTALE------QILFENTETSVEEASPAIEHTMQKCVFTP 114

Query: 114 ALNAFFDVLTQYSIECLVRN 133
              A  + L + +++ LV  
Sbjct: 115 LDRAVQEHLEKITLDELVAE 134


>gi|78776353|ref|YP_392668.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
          denitrificans DSM 1251]
 gi|78496893|gb|ABB43433.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
          denitrificans DSM 1251]
          Length = 134

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +  YG+  +   +   +  P +I +IA    + + +L ++L  L +AG+VE++RG +
Sbjct: 4  ISTKGSYGLAAICELSKRKENSPMQIKEIALNANVPQNYLEQLLGKLRRAGLVESIRGAK 63

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          GG  L RP   I ILD++ A E+   + +    H I
Sbjct: 64 GGYILARPPQDIKILDILMALEDDLKIVDTLVEHPI 99


>gi|186685046|ref|YP_001868242.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467498|gb|ACC83299.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 145

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
                +I +IA    I   +L ++L  L + G+++++RG +GG  L R   +IT+LD   
Sbjct: 23  KGEALQIREIAVLQDIPNRYLEQLLATLRRGGLIKSIRGAKGGYVLARDPGKITVLDAFS 82

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
             E S  V     S      + G   +  V ++A  A   VL +Y+++ L   RS  K+
Sbjct: 83  CMEGSDIVVS--DSEPTPNTVEGE-LIQEVWQEARQAANSVLEKYTLQDLCERRSLRKQ 138


>gi|326799915|ref|YP_004317734.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sphingobacterium sp. 21]
 gi|326550679|gb|ADZ79064.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
           21]
          Length = 145

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R + Y A   H      I +IA+A    E FL KILQ L K G++++V+G 
Sbjct: 4   FSKTAEYAMRAVFYIAQRSHEGQRTGIKEIADAVNSPEAFLAKILQKLSKVGLIQSVKGP 63

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +        + D+V A E       C       C     C L    +K  N    
Sbjct: 64  NGGFYIDTSGFSRPLADIVIAVEGDTIFKGCGMGLSY-CSEEYPCPLHGEFKKVRNQITL 122

Query: 121 VLTQYSI----ECLVRNRSSIKK 139
           +L   +I      L++ + ++ K
Sbjct: 123 MLRNTTIGQFNAELIKGQLTLNK 145


>gi|241202984|ref|YP_002974080.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240856874|gb|ACS54541.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 166

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKIGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
            +GG RL +   +I++LD+V A E S     C        +   D      C + + + K
Sbjct: 61  PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + S+  +
Sbjct: 121 AERVYRAELAKTSLADI 137


>gi|73662780|ref|YP_301561.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495295|dbj|BAE18616.1| putative transcriptional regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 127

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  +K T+Y +  L++   +N       +  +A+A  IS  +L KIL  LVK G++    
Sbjct: 1   MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L      +TI +V+   +    + E   +H   CP      +  ++ +A  A 
Sbjct: 61  GAKGGYQLSLNWQDVTIYEVITTIDGKQSLFEDSFNHGDSCP------INKLMIEAEQAL 114

Query: 119 FDVLTQYSIECLV 131
              L Q  ++ L+
Sbjct: 115 IGSLKQKKLKDLI 127


>gi|83646262|ref|YP_434697.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83634305|gb|ABC30272.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 156

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H     R   IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAEAGMTRSQLGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L RPAD IT+LDV +A EE  +     +     C +   C +TSVL    ++   
Sbjct: 61  GGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCYIG--CNITSVLEDEFQRISA 118

Query: 117 AFFDVLTQYSIECLVRN 133
                L Q +I  + R 
Sbjct: 119 TMDASLAQTTIADVARQ 135


>gi|320533390|ref|ZP_08034080.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134407|gb|EFW26665.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 165

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 10/153 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K  ++    L+   +        + +A    +S  +L K LQ L  AGIV +V G 
Sbjct: 1   MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG RL +PA ++++ DVV A   +  + +C        F   K      G C +   + 
Sbjct: 61  SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFIDQKSQILASGLCSINRAMS 120

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNA 143
           +A +A+   L   SI  L    + ++  ++  A
Sbjct: 121 RAEDAWRASLAGTSIADLAAGLDNATRTRMLQA 153


>gi|271963708|ref|YP_003337904.1| hypothetical protein Sros_2178 [Streptosporangium roseum DSM 43021]
 gi|270506883|gb|ACZ85161.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 149

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ R DY +R     A   + P  + ++A+   +   +L  IL  + +AG+V   RG 
Sbjct: 1   MRLSARVDYALRAAAELAAAGEGPTTVGELAKEQDMPPKYLENILLQMRRAGLVRGQRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RPA +IT+ DV++A +             +D     +  L  V      +   
Sbjct: 61  EGGYVLARPAAEITLADVIRAVDGPLANVRGERPEHVDY-RGPAESLQQVWIALRASERA 119

Query: 121 VLTQYSIECLV 131
           +L + +++ + 
Sbjct: 120 ILEEVTLDSVA 130


>gi|253990072|ref|YP_003041428.1| hypothetical protein PAU_02593 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781522|emb|CAQ84685.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 155

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H+    R   IA +   +   + ++L  L  AG+  +  G+
Sbjct: 1   MPTSTRFAVAIHILTDIALHHGQAVRSEDIARSVNTNPTVVRRLLGALADAGLTYSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L RP +QI++LD+ +A E+  +     +     C +  +  +T VL    N F  
Sbjct: 61  GGGALLARPPEQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHN--ITPVL---ENEFLR 115

Query: 121 V-------LTQYSIECLVRN 133
           +       L + +I  +   
Sbjct: 116 ITCVLETALAETTIADMANR 135


>gi|313205087|ref|YP_004043744.1| transcriptional regulator, badm/rrf2 family [Paludibacter
           propionicigenes WB4]
 gi|312444403|gb|ADQ80759.1| transcriptional regulator, BadM/Rrf2 family [Paludibacter
           propionicigenes WB4]
          Length = 147

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  YG+R ++  A   D    +   IA+   IS  +L  I+  L   G++   +G
Sbjct: 1   MRINTKIRYGLRTMIEIASSTDANGMLQKDIAKNQNISLKYLDPIISSLKLKGLIVNSKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R  G RL R    IT+LD+  A E    V EC  +       +  C   +   +  N F 
Sbjct: 61  RGSGYRLTREPKDITMLDIYTAFE-QIIVIECINNLGYCDRSMHDCKGRNYWNEFKNEFA 119

Query: 120 DVLTQYSIECLVRN 133
           ++L   ++E ++  
Sbjct: 120 EMLRSKNLEQIIEE 133


>gi|256389825|ref|YP_003111389.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256356051|gb|ACU69548.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 155

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   T++ +      A +        +Q+A    +   +L K LQ L +AGI+    G
Sbjct: 1   MKLPTSTEWVLHCAATLAQLRPAETASAAQLAAYYDLPAPYLAKQLQALTRAGILSATTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
            RGG RL R A  IT+L +V+A + +    EC              +C    +C L   +
Sbjct: 61  PRGGFRLARAAKDITMLQIVEAVDGAAAPYECREIRQQGRGGLTPDECQ--ETCPLARTM 118

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            +A  A+   LT  S+  ++  
Sbjct: 119 AEAHTAWRASLTAVSLADILAE 140


>gi|144898449|emb|CAM75313.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 151

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 4   TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +K+  + I  ++  A H    P +  +I     I   +L + LQ LV++G++  VRG +G
Sbjct: 5   SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRSGLLVGVRGPKG 64

Query: 63  GVRLCRPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           G RL R   +I++ +   VV+A E +    +      +    +G+  +  +         
Sbjct: 65  GYRLARERRRISVGEVVRVVRAMETAEDPFQ-----DVPASDLGAKVIRPMWGDLTEEIM 119

Query: 120 DVLTQYSIECLV 131
           D L   + + L 
Sbjct: 120 DRLDAITFDDLC 131


>gi|282882582|ref|ZP_06291201.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
           lacrimalis 315-B]
 gi|281297557|gb|EFA90034.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
           lacrimalis 315-B]
          Length = 135

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY  R+  + A H +       IAE C ++E F  +IL+ L  AGI    RG 
Sbjct: 1   MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-----SCGLTSVLRKAL 115
           +GG  L RP ++IT+  ++ A +    +  C       C          C     L    
Sbjct: 61  KGGYGLKRPKEEITLYQIICAIDGPTVINRCLGYDHY-CNRKAENGVKHCKFHKKLFHIQ 119

Query: 116 NAFFDVLTQYSIE 128
               ++    +I+
Sbjct: 120 KTIINMFDSETID 132


>gi|87302927|ref|ZP_01085731.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
 gi|87282423|gb|EAQ74382.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
          Length = 144

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + +T+YG+  L+  A         +  +IA    I E +L ++L  L ++G+V ++R
Sbjct: 1   MSFSTKTEYGLVALIELAEVYSGGGVLQAGEIARRQGIPERYLEQMLTSLRRSGLVHSLR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG +L R  + IT+ +V+   E       C    +     +    LT++ +K   A 
Sbjct: 61  GPRGGYQLARSPELITVAEVLACLEGK-AGGACPDGKRSTTAFL---VLTALEQKLEQAR 116

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
             VL   +++ L+ +  +  +
Sbjct: 117 ARVLAALTLKQLLEDTRARNQ 137


>gi|229013707|ref|ZP_04170836.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
 gi|229062189|ref|ZP_04199513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|229135339|ref|ZP_04264130.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
 gi|229169232|ref|ZP_04296946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|228614298|gb|EEK71409.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|228648114|gb|EEL04158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
 gi|228717172|gb|EEL68848.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|228747629|gb|EEL97503.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
          Length = 151

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 9   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L ++  
Sbjct: 69  -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 127

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   +++ LV N +S IK+
Sbjct: 128 AMENVLANVTVQQLVTNLKSKIKE 151


>gi|146328986|ref|YP_001209737.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
 gi|146232456|gb|ABQ13434.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
          Length = 141

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +TK ++Y   + +   +  +     + +A+   I+     K+L+ L+K  IV++VRG  
Sbjct: 3   RITKESEYAFLL-LSVLLSEESAQSAAVLAKKTGIAAPMASKVLKRLLKGDIVQSVRGAY 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG RL + A+ IT L+VV   E    + EC   +K +C L  +C ++   ++   A   +
Sbjct: 62  GGYRLAKAAETITALEVVAVIEGMPELVECVDQNK-NCDLSSNCPISPFWQQMNQAIETM 120

Query: 122 LTQYSIECLVRNRS 135
           L   ++  + R+ +
Sbjct: 121 LAAKTLADMQRDEN 134


>gi|319442413|ref|ZP_07991569.1| Rrf2 family transcriptional regulator [Corynebacterium variabile
           DSM 44702]
          Length = 159

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           MHLTK  D G+R LM         A        + ++A         + K++  L   G+
Sbjct: 1   MHLTKFADLGLRSLMILGDTGAAGATDPSQRRTVGELAVQTAAPASHVKKVVARLTGLGV 60

Query: 54  VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLR 112
           + +VRGR GGV L   A    I  +++  E    V +C    +  CPL    C L  +L 
Sbjct: 61  LASVRGRSGGVYLADGARDTDIGRLLRELEGRHEVVDC--EGEAPCPLAARDCSLRHLLA 118

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +A   FF      ++  L+  
Sbjct: 119 QAQENFFATFDGMTLGELIER 139


>gi|302551156|ref|ZP_07303498.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468774|gb|EFL31867.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces viridochromogenes DSM 40736]
          Length = 152

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R ++  A    + P +   +A A  I   FL  IL  L + G+V++ RG
Sbjct: 1   MRISARADYAVRAVVELAARQGEGPVKAEAVATAQDIPHKFLEGILGDLRRGGVVDSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A +IT+ DV++A +             +         L  +         
Sbjct: 61  GGGGYRLAREATEITVADVIRAVDGPIVSVRGERPTGLAYTGTAE-PLLPLWIALRANVR 119

Query: 120 DVLTQYSIECLVR 132
            +L   ++  L  
Sbjct: 120 RILEGVTVADLAA 132


>gi|260588850|ref|ZP_05854763.1| sensory box protein [Blautia hansenii DSM 20583]
 gi|260540629|gb|EEX21198.1| sensory box protein [Blautia hansenii DSM 20583]
          Length = 488

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT  TDY IR++ + A + + P   + IA +  I   ++ KI++ L  A IV +V G 
Sbjct: 1   MQLTSTTDYSIRLVCFLA-YKEEPCSTATIATSANIPNNYIPKIIKKLKIANIVGSVEGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------CPLVGSCGLTSVLRK 113
           +GG  L +  + IT+ D++   E +  + +C    +         C    +C + +V  +
Sbjct: 60  QGGYFLLKKPETITLWDILDTMESTMKINKCLEEKQEGECCVPNYCHNRETCKVRAVFEQ 119

Query: 114 ALNAFFDVLTQYSIECLV 131
                   L + +I  L+
Sbjct: 120 FQMDLERKLEEVTIAELI 137


>gi|222084808|ref|YP_002543337.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722256|gb|ACM25412.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 166

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +  +  I  +   A +        + IAE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKLGEGVEQAIHSVAVLAGLSEGSVLSAAAIAEFHGVSVSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCP---LVGSCGLTSVLRK 113
            +GG RL R    I++LD+V A E       C           P       CG+++ +  
Sbjct: 61  PKGGYRLARLPKDISLLDIVLAVEGPAPAFRCAEIRQRGPNSLPGKYFTKPCGISAAMLA 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A   +   L + +I  ++ +
Sbjct: 121 AERVYRAELAKTAIADILAD 140


>gi|158313027|ref|YP_001505535.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108432|gb|ABW10629.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EAN1pec]
          Length = 151

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V++ RG 
Sbjct: 1   MQISARADYALRALLTLAASDGSLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +LCRPA++ITI  V++AT+                       L  V          
Sbjct: 61  DGGYQLCRPAEEITIATVIRATDGPLASVRGRPPENAQYEGAAK-HLQDVWIAVRVNLRR 119

Query: 121 VLTQYSIECLVRNR 134
           VL   ++  +   +
Sbjct: 120 VLESVTLADVASGK 133


>gi|226197420|ref|ZP_03792997.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|225930799|gb|EEH26809.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 142

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
           + I +I++A  IS+  L K++Q L + G +ETVRGR GG+RL   +  +T+ +VV+ TE 
Sbjct: 2   STIQEISDAYGISKNHLMKVVQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTEN 61

Query: 85  SFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            F +  CFA        C +  +C L  V   A  AFF  L +++I  L +  S +  + 
Sbjct: 62  DFALVGCFAGESESHRSCVIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATLL 121

Query: 142 N 142
            
Sbjct: 122 G 122


>gi|313633680|gb|EFS00431.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
          Length = 143

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    ++ +       IA +   + + + +I+  L KAG++ +  G 
Sbjct: 3   MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
            G   L + A +IT+ D+  A + +  + +   +   +C +  +  +T  +V   A    
Sbjct: 63  SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 121

Query: 119 FDVLTQYSIECLVRN 133
              L Q ++  +  N
Sbjct: 122 EADLKQTNLSQITAN 136


>gi|309774620|ref|ZP_07669645.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917651|gb|EFP63366.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 134

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL   TDY +R+++Y A       +  +++E   I + ++ K+   L +A I+E V G 
Sbjct: 1   MHLKISTDYAVRIVLYLAKKR-QLVQSKELSEQLHIPQGYVLKVASILKEAQILEAVTGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119
            GG RL +    I I DV++A E +  +  C    +      GS C +     K  +   
Sbjct: 60  DGGFRLVKHPRDIPIYDVIRAMETTMQINRCLEKDRYCSRDAGSFCQVRHFYEKIQSYLD 119

Query: 120 DVLTQYSIECLVR 132
            +L   SI+ L+ 
Sbjct: 120 HMLLSTSIQELLE 132


>gi|237736975|ref|ZP_04567456.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420837|gb|EEO35884.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 143

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +Y IR+L+Y   + +      ++I++A  I  LF  +IL+ L KA +V+  +G
Sbjct: 1   MRIKNEIEYVIRILLYLTKYGENRIVSSNEISDAEDIPHLFSLRILKKLEKASLVKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG +L +P+++IT+ D V+  E    + +C    +      G C +          F 
Sbjct: 61  ARGGYQLTKPSEEITLRDAVETIEPVICIKDCVNDPESCSLRKGECAVHRAFNGIQREFI 120

Query: 120 DVLTQYSIECLVRN 133
             L   + + L   
Sbjct: 121 KALESRNFKELAEE 134


>gi|289548069|ref|YP_003473057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Thermocrinis albus DSM 14484]
 gi|289181686|gb|ADC88930.1| transcriptional regulator, BadM/Rrf2 family [Thermocrinis albus DSM
           14484]
          Length = 143

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D   +  ++++   I   FL KI   LV+  I+++ +G  GG     P ++ITILDV+
Sbjct: 20  NRDRLVKSEEVSQVQNIPRPFLSKIFHKLVRERILKSYKGPTGGFTFAIPPEEITILDVI 79

Query: 80  KATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           KA +E + +  C A     C       C +            + LT  +I  L       
Sbjct: 80  KALDEDYKLDYC-ALRPGRCEEWQTSPCNVHDKWVALREHVLEYLTTTTIAELAGVEDKH 138

Query: 138 KK 139
           +K
Sbjct: 139 RK 140


>gi|163792642|ref|ZP_02186619.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
 gi|159182347|gb|EDP66856.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
           proteobacterium BAL199]
          Length = 180

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 7   TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            +Y +  L+  A+           +A+   +   F+ K+L  L KAG+V    G RGG R
Sbjct: 8   VEYALHTLLNLALAPPGTAPSARDLADFQRLPVPFIQKLLTQLEKAGLVTGAEGIRGGWR 67

Query: 66  LCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTSVLRKAL 115
           + R A+ IT+LDV  A +    + +C            +      + G C + +V+  A 
Sbjct: 68  MARAANAITVLDVADAAKGDDALFKCRNIRARCALWDDASPPQAAVSGVCSIHAVMLSAE 127

Query: 116 NAFFDVLTQYSIECLVRN 133
            A    L  +++  +V  
Sbjct: 128 AAMRQELAAHTLADIVDR 145


>gi|226357841|ref|YP_002787581.1| transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115]
 gi|226320084|gb|ACO48077.1| putative transcriptional regulator, Rrf2 family [Deinococcus
           deserti VCD115]
          Length = 138

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L   +++        +IA +  ++ + +  ++  L KAG+++T +G  G  RL RP
Sbjct: 8   AVHILTLISLYPHNARTSDEIAASVGVNPVVVRNVMSLLRKAGLLDTRQGSPG-ARLIRP 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127
            + IT+LDV  A      V +        CP+ G+    LT+VL  A  A  D L   ++
Sbjct: 67  PEAITLLDVYHAVNAPELVFKLHDQPHPQCPVGGNIQAALTTVLGNAQQAMEDHLATVTL 126

Query: 128 ECLVRN 133
             ++ +
Sbjct: 127 ADIMAD 132


>gi|328541946|ref|YP_004302055.1| HTH-type transcriptional regulator NsrR [polymorphum gilvum
           SL003B-26A1]
 gi|326411696|gb|ADZ68759.1| HTH-type transcriptional regulator NsrR [Polymorphum gilvum
           SL003B-26A1]
          Length = 132

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             I  IA+ C      +  ++Q L K G +++V+GR GG+ L R   +I++ ++V   E 
Sbjct: 1   MSIDTIADRCRTGRPQVVHVVQILRKHGYIKSVQGRNGGIWLDRNPAEISLAEIVHLFES 60

Query: 85  SFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
              + ECF   +   C L  +CG    L +AL AF   L   +I  L    +++
Sbjct: 61  DLNLVECFEPKRTCRCTLQAACGFRRTLDRALQAFLAELEATTIADLAGETAAL 114


>gi|116250351|ref|YP_766189.1| Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254999|emb|CAK06073.1| putative Rrf2 transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 166

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
            +GG RL +   +I++LD+V A E S     C        +   D      C + + + K
Sbjct: 61  PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECL 130
           A   +   L + S+  +
Sbjct: 121 AERVYRAELAKTSLADI 137


>gi|325102879|ref|YP_004272533.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324971727|gb|ADY50711.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 145

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 15/147 (10%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R + + A     D    I +IA+     E FL KILQ L + GIV + +G 
Sbjct: 4   FSKTCEYAMRAVFFIAYKTSEDKKVGIKEIAQGINSPEHFLAKILQDLSRKGIVLSAKGP 63

Query: 61  RGGVRLCRPADQITILD----VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            GG  +    D IT+      +V+A +       C       C     C +    +K  N
Sbjct: 64  NGGFYM----DSITLKQPLSNIVEAIDGDKIFVGCGLGLNY-CSESNPCPIHHEFKKIRN 118

Query: 117 AFFDVLTQYSI----ECLVRNRSSIKK 139
               +L   +I    E L+   S++KK
Sbjct: 119 DIIKMLKNTTIEDFNEDLILGNSTLKK 145


>gi|163942239|ref|YP_001647123.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864436|gb|ABY45495.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
          Length = 143

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  D+IT+LDV KA E  E   +     +  I+CP+  +    L  +L ++  
Sbjct: 61  -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 119

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A  +VL   +++ LV N +S IK+
Sbjct: 120 AMENVLANVTVQQLVTNLKSKIKE 143


>gi|229167407|ref|ZP_04295145.1| Transcriptional regulator [Bacillus cereus AH621]
 gi|228615969|gb|EEK73056.1| Transcriptional regulator [Bacillus cereus AH621]
          Length = 120

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 14  LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +++ A    +    + Q+AE   +S  +L KIL  L K G++ +  G +GG  L    + 
Sbjct: 1   MLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSSNWED 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           I+ LD++ A E    + EC       C      C +  V+  A     + L    I  L 
Sbjct: 61  ISFLDIIHAIEGKTSLFEC-------CLHQEPGCLINEVMLAAEEKMEEELRNQKIVDLA 113

Query: 132 RN 133
           + 
Sbjct: 114 KK 115


>gi|289643651|ref|ZP_06475764.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
           Datisca glomerata]
 gi|289506542|gb|EFD27528.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
           Datisca glomerata]
          Length = 151

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  N    +   +A A  +   FL  IL  L ++G+V + RG 
Sbjct: 1   MQISARADYALRALLTLAASNGDLVKGETLATAQDLPLRFLENILTDLRRSGLVRSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RLCRPA++IT+  V++AT+            +          L  V      +   
Sbjct: 61  DGGYRLCRPANEITVAMVIRATDGPLASVRGRRPEEAVYEGAAK-HLQEVWIAVRVSIRR 119

Query: 121 VLTQYSIECLV 131
           VL + ++  + 
Sbjct: 120 VLEEVTLADIA 130


>gi|152976907|ref|YP_001376424.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025659|gb|ABS23429.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 143

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   G+ +L   AI  +       IA +   + + + +I   L +AG+V+   G+
Sbjct: 1   MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L R  D+IT+LDV KA E  E   +     +  ++CP+  +    L  +L +A  
Sbjct: 61  -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNVECPVGANIQSVLEIILIQAQE 119

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   +++ LV + +S I+K
Sbjct: 120 AMEHVLANVTVQQLVTSLQSKIQK 143


>gi|256389588|ref|YP_003111152.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Catenulispora acidiphila DSM 44928]
 gi|256355814|gb|ACU69311.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
           acidiphila DSM 44928]
          Length = 151

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H D       +AEA   +   + K++  L   G+V+  RGR GG+ L       ++  VV
Sbjct: 25  HPDELPTTRGVAEAMGAASTHMAKVVGKLQHLGLVQARRGRGGGLVLTPAGRVASVGAVV 84

Query: 80  KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           +  E S  +A C       CPL  +C L S LR A  AF+  L Q ++E +
Sbjct: 85  RTFEGSGDLAACVDGEDP-CPLNAACRLRSALRAAQEAFYASLDQLTVEDV 134


>gi|56752461|ref|YP_173162.1| hypothetical protein syc2452_d [Synechococcus elongatus PCC 6301]
 gi|81300274|ref|YP_400482.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687420|dbj|BAD80642.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169155|gb|ABB57495.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
           elongatus PCC 7942]
          Length = 151

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+ + +Y +  L+  A    N  P +I Q+A+   I + +L ++L  L + GIV +VRG 
Sbjct: 8   LSGKCEYALLALIELARGHSNGEPQQIKQLADRQNIPDRYLEQLLATLRRGGIVRSVRGA 67

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           RGG  L R   QI++ DVV   +       E      +         L  +  +   A  
Sbjct: 68  RGGYLLAREPWQISMQDVVHCIDGTEMQRTEAIDQQSVTIERQ---ILVDINVELCKAVE 124

Query: 120 DVLTQYSIECLVRNRSS 136
           DVL  YS++ L+  R +
Sbjct: 125 DVLAAYSLQDLLEIREN 141


>gi|237733505|ref|ZP_04563986.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383338|gb|EEO33429.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 134

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL   TDY +R+++Y +          ++++   I + ++FKIL+ L ++ +V +  G 
Sbjct: 1   MHLKMSTDYAVRIIIYLSEKQCR-VSSKELSKKLVIPQNYIFKILKILQESNLVNSYSGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GG  L +    IT+ D+++ATE +  +  C  + +  C      +C       K     
Sbjct: 60  DGGFILKKEPKDITMFDIMQATETTTRINRCLENDEY-CSRHATTNCKARCFYIKMQMYM 118

Query: 119 FDVLTQYSIECLVR 132
            D   + +I+ L+ 
Sbjct: 119 DDTFKRMTIQDLLE 132


>gi|225412244|ref|ZP_03761433.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
           DSM 15981]
 gi|225042209|gb|EEG52455.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DYG+R++   A+ +     I QI E  CI + F +KIL+ L  AG+V+  RG 
Sbjct: 24  MMITRESDYGVRIIR--ALKDGGLMTIGQICERECIPKQFAYKILKKLELAGLVQIKRGF 81

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GG  L R    +T+ DV++AT+E FF+  C  +   DC       C +   L +     
Sbjct: 82  GGGCALARDLADMTLYDVIRATDEEFFLTHCLQAD-FDCEYLAKSPCTIHRELARVQGIL 140

Query: 119 FDVLTQYSIECLV 131
              L   S+  L+
Sbjct: 141 EQELRARSMAELL 153


>gi|297191372|ref|ZP_06908770.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720618|gb|EDY64526.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 160

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++   ++ +   +      + P   +++AE   +S  +L K LQ L +AG+V +V+G+
Sbjct: 1   MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG  L R    IT+LDVV+A +       C         A+    C     C +   + 
Sbjct: 60  AGGYVLTREPASITVLDVVEAVDGPGQAFTCTEIRQRGPLATPAESC--TAPCAIARAMA 117

Query: 113 KALNAFFDVLTQYSIECLVR 132
            A  A+   L   SI  LV+
Sbjct: 118 GADAAWRAALRAVSIADLVQ 137


>gi|297199432|ref|ZP_06916829.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sviceus ATCC 29083]
 gi|197713030|gb|EDY57064.1| iron-sulfur cluster assembly transcription factor IscR
           [Streptomyces sviceus ATCC 29083]
          Length = 152

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R ++  A+     P +   IA    I   FL  IL  L + GIV++ RG
Sbjct: 1   MRISARADYAVRAVLELAVRQGTEPVKAEAIAAVQDIPHKFLEGILGDLRRGGIVDSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL R A  +T+ DV++A +             ++        L  +         
Sbjct: 61  GGGGYRLAREASAVTVADVIRAVDGPIVSVRGERPTGLEYTGSAQ-PLLPLWIALRANVR 119

Query: 120 DVLTQYSIECLVRN 133
            +L   +I  +  +
Sbjct: 120 KILEGVTIADIAGD 133


>gi|306820775|ref|ZP_07454400.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551165|gb|EFM39131.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 131

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L Y +  +      S ++E   I   F  KIL+ L   GI +  RG 
Sbjct: 1   MRITQETDYALRILDYLSATDKEIVGASVLSEDLNIPVRFALKILRKLNLYGITKANRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
            GG  L    + I    VV+A E   ++ +C       C       +C +   LR     
Sbjct: 61  SGGYFLLMKPEDINYKMVVEAIEGEIYINKCLQDRSC-CNRRMKKDTCIINKNLRSIQEV 119

Query: 118 FFDVLTQY 125
               L +Y
Sbjct: 120 LNKELEKY 127


>gi|229085778|ref|ZP_04218006.1| Transcriptional regulator [Bacillus cereus Rock3-44]
 gi|228697577|gb|EEL50334.1| Transcriptional regulator [Bacillus cereus Rock3-44]
          Length = 131

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 14  LMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++Y  +     +  + Q+A+   +S  +L KIL  LVKAG++E+  G  GG  + R +  
Sbjct: 1   MVYLTLTPKGKSTGVEQLAKIQNLSPTYLSKILTKLVKAGLIESNPGVNGGYSIVRRSHN 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           I+ LDV+ A E    +  C   H+        C + +V+  A N   D L +  I  + +
Sbjct: 61  ISFLDVIHAIEGQTTLFSCSLEHEKL-FRNDDCLIENVMIDAENKMKDELNKKYIIDIAK 119

Query: 133 NRSSIKK 139
              S KK
Sbjct: 120 QIQSKKK 126


>gi|160935060|ref|ZP_02082446.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
 gi|156866513|gb|EDO59885.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
          Length = 134

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+T   DY +R++ + A           IAE   +   F  KIL+ LV   I+ + +G 
Sbjct: 1   MHMTLEADYAVRIVEFLAEQ-GCKTDAHTIAEQTRVPLRFALKILRTLVSQDIIVSYKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG +L  PA++IT+  V++A E  + +  C    +  C    +C    V  +      +
Sbjct: 60  KGGYQLAHPAEEITLRQVIEAVEGPYVLNRC-QHDEYTCGHT-ACRFHHVYNEISQLVRE 117

Query: 121 VLTQY 125
            L   
Sbjct: 118 KLESV 122


>gi|157738370|ref|YP_001491054.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
          RM4018]
 gi|315636657|ref|ZP_07891890.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
          JV22]
 gi|157700224|gb|ABV68384.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
          RM4018]
 gi|315479083|gb|EFU69783.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
          JV22]
          Length = 137

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +  YG+  +   + H  D P +I  I+    I + +L ++L  L KA +V ++RG R
Sbjct: 4  ISTKGVYGLSAMYELSKHKADTPMQIKDISANANIPQNYLEQLLSKLRKANLVNSIRGAR 63

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAE 90
          GG  L +  D+I I+D++ A E+   + +
Sbjct: 64 GGYILAKKPDEIKIVDILIALEDDIKIID 92


>gi|186685463|ref|YP_001868659.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467915|gb|ACC83716.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
           73102]
          Length = 156

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+ + +Y +  L+  A H+    P  +S+I     I E +L +IL  L +AG+V++ RG 
Sbjct: 16  LSSKVEYALLALLELASHHGKKLPLTMSEITTKQPIPERYLEQILTNLRRAGVVQSQRGS 75

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R   QIT+L++V   E              + P +    +  V  +A  A  +
Sbjct: 76  KGGFVLAREPWQITLLEIVTLVEGERK-----EKDTSNSPTLEKTLVYEVWEQANAAAIE 130

Query: 121 VLTQYSIECLVRNRSSIKK 139
           VL +Y+++ L   R +  +
Sbjct: 131 VLGRYTLQDLCEERETRAQ 149


>gi|87307172|ref|ZP_01089317.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
           3645]
 gi|87289912|gb|EAQ81801.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
           3645]
          Length = 153

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            ++  +Y +R + + A          +IA    +   +L K+LQ L KAG+V + RG  G
Sbjct: 2   FSQTVEYALRAVCHLAFIAPNSCTTEEIATGTKVPLAYLSKVLQGLAKAGVVRSQRGIGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ L +  D++TIL+VV A +    +  C     +    V  C L   L  AL    +  
Sbjct: 62  GMSLIKRPDELTILEVVNAVDPIQRIRTC--PLGLSTHGVKLCPLHRRLDNALKGVEEAF 119

Query: 123 TQYSIECLVRNRSS 136
              ++  ++   S 
Sbjct: 120 GGTTLAEVIAEPSE 133


>gi|291303191|ref|YP_003514469.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572411|gb|ADD45376.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 160

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L   T++ +      A +   +    +Q+AE   +   +L K LQ LVKAGI+    G 
Sbjct: 5   KLPTSTEWLLHSATTLAQLEPGHSASAAQLAEYYDLPPAYLAKQLQVLVKAGILAATTGA 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
           RGG RL +PA ++T+L +V+A + +    EC         A  + DC    +C L + + 
Sbjct: 65  RGGFRLAKPAAEVTLLAIVEAVDGTASPYECREIRQQGRGALPEKDCRR--TCVLAARMY 122

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A +A+   L   ++  ++ +
Sbjct: 123 DAHDAWRRSLAGVTLADILDS 143


>gi|323485653|ref|ZP_08090991.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
           WAL-14163]
 gi|323691728|ref|ZP_08105988.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
           WAL-14673]
 gi|323401003|gb|EGA93363.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
           WAL-14163]
 gi|323504206|gb|EGB20008.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
           WAL-14673]
          Length = 138

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L   +  +       ++AE   + + F +KIL+ L KAGIV+  RG 
Sbjct: 1   MLITRETDYALRILRTLS--DGKSYTAGELAERESLPQKFAYKILKKLEKAGIVQITRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG RL       T+  +++A E +  +  C       C   G     C + + L K  N
Sbjct: 59  SGGCRLGCDLRTATLYQLIEAVETNARLTSCMTPG-YQCEWRGRYGSPCTIHTQLAKVQN 117

Query: 117 AFFDVLTQYSIECLVRNRSS 136
           A        S+  L+    +
Sbjct: 118 AIDQEFRSRSLYWLLNGEEN 137


>gi|320102385|ref|YP_004177976.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
           43644]
 gi|319749667|gb|ADV61427.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
           ATCC 43644]
          Length = 137

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
            D P  + +IA    I E +L +IL  L  AG+V++VRG  GG RL RP  ++T+ +V++
Sbjct: 24  RDEPIPLREIAAEDGIPERYLVQILLQLKGAGLVQSVRGSTGGYRLARPPHRLTLGEVIR 83

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           A   S                     L  V R    A + +L Q ++  LV    S
Sbjct: 84  AIGGSASPLPQPLGPGGR-------ALAQVWRAIEQAEWSILDQTTLAQLVPPEDS 132


>gi|255532922|ref|YP_003093294.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
           2366]
 gi|255345906|gb|ACU05232.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
           2366]
          Length = 155

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T + +YG+R+L+    H+      I  I+EA  +S  ++ K+ + L  AG + +  G
Sbjct: 1   MKITAQEEYGLRILLRIGRHDHGDGISIPAISEAEGLSGAYVAKLTRILRMAGYINSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
            +GG  L + A QI I  V+K    + +  +    +      C     C + S+ +    
Sbjct: 61  NKGGYVLAQTAGQININQVMKVLGGALYSKKFCEDYPGTLKLCTNSIDCSIRSLWQMIQF 120

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
               +L + +++ L+        +  +
Sbjct: 121 TVDQLLDKVTLQDLISQEQESSLLLES 147


>gi|168182103|ref|ZP_02616767.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|237793605|ref|YP_002861157.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
 gi|182674586|gb|EDT86547.1| rrf2 family protein [Clostridium botulinum Bf]
 gi|229263550|gb|ACQ54583.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
          Length = 143

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L +AG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +  DQIT+LDV +A E  +   + +   S  I+CP+  +    +  VL  A  
Sbjct: 61  GGAYLL-KDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   ++E +V   R  IKK
Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143


>gi|330836544|ref|YP_004411185.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
 gi|329748447|gb|AEC01803.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
           DSM 17374]
          Length = 146

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y +  L++ A+  D         I+E   IS  +L ++  PL +  I++  R
Sbjct: 1   MRISTRGRYSLEALLFIALVQDAESIVSAHLISEKTGISYGYLEQLFIPLKRTRIIKGSR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG R+    D+IT+ D++++ E S   +    S            +     +  +  
Sbjct: 61  GAKGGYRIASDLDKITVGDILRSVENSLKDSSRPDSAVRQDISNPIPKVKETWAELHDTI 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              +   ++  +V +   +  
Sbjct: 121 SGFIDSLTLADVVSSYHKMND 141


>gi|82659477|gb|ABB88853.1| putative transcriptional regulator [Azospirillum brasilense]
          Length = 151

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++K+  + I  ++  A +    P +  +I     I + +L ++LQ LV+ G++  VRG 
Sbjct: 3   RISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVRDGVLAGVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL R   +IT+ ++VK         +          ++G   +  +  +       
Sbjct: 63  RGGYRLARERRRITLGEIVKVVRSMETATDPIEEPAGS--ILGHKVVRPLWNELQEECMK 120

Query: 121 VLTQYSIECLV 131
            L   +IE L 
Sbjct: 121 KLDDITIEDLC 131


>gi|257054249|ref|YP_003132081.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
 gi|256584121|gb|ACU95254.1| rrf2 family protein, putative transcriptional regulator
           [Saccharomonospora viridis DSM 43017]
          Length = 156

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L +  ++ +   +  +   D P   +++A+   +   +L K LQ L +  I+ +V G 
Sbjct: 1   MRLGQAVEWMLHTCLNLSWV-DEPVSTARLADIYRLPSAYLNKQLQALAREKILVSVPGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKA 114
           RGG RL R   +I++LDVV A E       C            D      C ++  +R+A
Sbjct: 60  RGGFRLARDPAEISLLDVVVAVEGKAEAFRCAQILRNGPGGDPDVDYSSYCVVSQSMRRA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A+   L   +I  +  +
Sbjct: 120 ELAWRRELAGRTIADIAAD 138


>gi|159901882|gb|ABX10616.1| transcriptional regulator [uncultured planctomycete 6N14]
          Length = 141

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R  Y    ++  AI ND   P  I +I +   +   FL +IL+ L   G V+++R
Sbjct: 1   MVISARVHYACVAMLELAIQNDEGSPVAIREITDRHGVPGPFLVQILRSLRALGWVQSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG RL      IT+LD+ +A   S     C    K   P+     L      A  A 
Sbjct: 61  GSQGGYRLSVDPATITLLDIAEAI-GSQE-TGCRTEAKGT-PIAAM--LQEQWDDAAEAS 115

Query: 119 FDVLTQYSIECLVRN 133
             VL Q ++  LV  
Sbjct: 116 RRVLGQATLSGLVER 130


>gi|328880478|emb|CCA53717.1| Predicted transcriptional regulator of sulfate adenylyltransferase,
           Rrf2 family [Streptomyces venezuelae ATCC 10712]
          Length = 151

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R DY +R  +  A   D  P +   IAE   IS  FL  IL  + K G+V++ RG
Sbjct: 1   MRISARADYAVRAALQLAAAQDAGPLKAEAIAEDQGISHKFLEGILGDMRKGGLVQSQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAF 118
             GG  L RPA+ I++ +V++  +              D    G    L ++        
Sbjct: 61  GNGGYWLARPAESISVAEVIRCVDGPLVSVR--GERPPDLSYTGPAESLLTLWIALRAGV 118

Query: 119 FDVLTQYSIECLVRNR 134
            +VL   S+  +   R
Sbjct: 119 REVL-GVSLAEVAAAR 133


>gi|331084569|ref|ZP_08333668.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401000|gb|EGG80597.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 141

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR ++Y           ++I+    I   +L K+L  L KA  + +  G 
Sbjct: 1   MQLNVTTDYAIRTVLYLGQCK-KLASATEISNEMKIPRGYLEKVLSKLKKAEYISSDLGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
           RGG RL    ++IT+ DV++  E +  +  C       C    V  C +     K     
Sbjct: 60  RGGYRLNMTLEEITLGDVIRLMENATKINRCLEEDMF-CNRKAVDYCAVRRYYEKVQKKL 118

Query: 119 FDVLTQYSIECLVR 132
            +     S++ ++ 
Sbjct: 119 ENHFFTISLKEILE 132


>gi|81230337|ref|YP_398716.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|215481753|ref|NP_665782.3| ANL44 [Synechococcus elongatus PCC 7942]
 gi|157400503|gb|AAM81169.3|AF441790_40 ANL44 [Synechococcus elongatus PCC 7942]
 gi|81170309|gb|ABB58647.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 144

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++    Y +  L+  A         +I +IA    +   +L +IL  L K G + + R
Sbjct: 1   MAVSSTFRYALIALIEVAKIRETGGVLQIEEIASQQHLPTKYLGQILTLLRKQGFLISQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           GR GG RL R   QI ++D+  + EE+        SH        +  +  +L +   A+
Sbjct: 61  GRHGGYRLAREPWQIRLIDIYYSLEEAQQAGASLPSHAT----SSAMVVDQLLHQIEAAW 116

Query: 119 FDVLTQYSIECLVRNRSSI 137
            + L  Y+++ L      +
Sbjct: 117 REPLEHYTLQDLRDQAEGL 135


>gi|209966309|ref|YP_002299224.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
 gi|209959775|gb|ACJ00412.1| rrf2 family protein (putative transcriptional regulator)
           [Rhodospirillum centenum SW]
          Length = 151

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+K+  + I  ++  A +    P + ++I     I + +L ++LQ LV+AG++  VRG 
Sbjct: 3   RLSKKLVFAIETVLDIAYNAGSAPVQSAEITARQGIPKRYLEQVLQALVRAGVLAGVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL +   +IT+ ++V+         +           +G   +  +  +       
Sbjct: 63  RGGYRLAKERRRITVGEIVRVVRSLEQATDPIEEPAGS--ELGMRVVRPLWAELQEEVMQ 120

Query: 121 VLTQYSIECLV 131
            L + SIE L 
Sbjct: 121 RLDRTSIEDLC 131


>gi|254445085|ref|ZP_05058561.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
 gi|198259393|gb|EDY83701.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
          Length = 137

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ + DY  R L   A    +   +RI ++A+   I   +L +IL  L   G++E+ R
Sbjct: 1   MKLSVKLDYACRALARMASRRPSGELSRIEELADVEAIPANYLVQILGELRNGGLIESRR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G++GG  L R  ++IT+ +V+   +        F S        GS  +    +   + F
Sbjct: 61  GKQGGYLLARAPEEITLREVIALVQGDV-----FGSVANPVGGSGS-TVAKTWKVLQDCF 114

Query: 119 FDVLTQYSIECLVRN 133
               ++ ++  L+ +
Sbjct: 115 EQKASELTVRDLMPD 129


>gi|328883585|emb|CCA56824.1| Predicted transcriptional regulator of 4-carboxymuconolactone
           decarboxylase, Rrf2 family [Streptomyces venezuelae ATCC
           10712]
          Length = 157

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++   ++ +   +  A I +      +++A    +   +L K LQ L +AGIV +V G +
Sbjct: 1   MSDGVEWALHSCLNLAWIGSGQAVTAARLAAYHELPPAYLNKQLQALARAGIVTSVSGPK 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKAL 115
           GG RL R  D+IT++DVV A E       C                   C +   + +A 
Sbjct: 61  GGFRLARALDRITLMDVVAAIEGPDEAFRCTEIRQQGPGAAAPESYAAECAIAGAMSRAE 120

Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
            A+   L   +++  VR R+ ++
Sbjct: 121 LAWRRELMAQTLDD-VRARAELQ 142


>gi|253577980|ref|ZP_04855252.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850298|gb|EES78256.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 135

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +    +S I E   I+  F +KIL+ L KA IV+  RG 
Sbjct: 1   MFITRECDYAVRVVR--ALWGESRLSVSDICEKEAITAPFAYKILKKLQKAEIVKGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG  L R  D++T+ +V  A +   F+ EC    K +C   G     C +   L    +
Sbjct: 59  HGGYSLNRGLDELTLYEVYSAIDPDMFIIECL-DPKYNCVRDGQDGLPCLVHRELLSVQD 117

Query: 117 AFFDVLTQYSIECLVRN 133
               +L + +I+ ++  
Sbjct: 118 ELISLLKRKTIQQIMEE 134


>gi|227538160|ref|ZP_03968209.1| possible transcription regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242003|gb|EEI92018.1| possible transcription regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 149

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R +MY A          I +IAEA    E FL KILQ L K G++ + +G 
Sbjct: 8   FSKTCEYALRAVMYIAQCSQQGEKVGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 67

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     +  + D+V + +       C       C     C L    +K     F 
Sbjct: 68  NGGFYMTPEDTKRPLADIVSSIDGVQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKLFV 126

Query: 121 VLTQYSIE----CLVRNRSSIKK 139
           +L + SI      L++   ++ K
Sbjct: 127 MLQETSIGQFNMDLIKGNFTLSK 149


>gi|291532974|emb|CBL06087.1| Predicted transcriptional regulator [Megamonas hypermegale
          ART12/1]
          Length = 75

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  Y +R+++  A+++   P RI  IAE   IS+ +L +I+  L KAG V+++RG
Sbjct: 1  MKISTKGRYALRLMLDIALNDAKTPVRIKDIAERQQISDKYLEQIVSSLNKAGFVKSLRG 60

Query: 60 RRGGVRLCRPADQI 73
           +GG RL +    I
Sbjct: 61 PQGGYRLTKNQKSI 74


>gi|331092088|ref|ZP_08340919.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402289|gb|EGG81860.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 132

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TDYGIR+++Y  I N+     + ++E   I + ++ K+ + L  A IV   +G 
Sbjct: 1   MQLSVTTDYGIRIVLYL-IKNNEVTSSAILSEKLDIPKTYVLKVTKKLEAANIVACYQGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GGV L    ++I++ DVV ATE +  + +C  +    C      +C +  V      A 
Sbjct: 60  NGGVNLLPRPEEISLWDVVIATETTTAINKCLDTDGC-CNRHAEDTCKVREVYLVLQKAV 118

Query: 119 FDVLTQYSIECLVR 132
            + +    +  L  
Sbjct: 119 EERMQNIKLIDLAE 132


>gi|288957208|ref|YP_003447549.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909516|dbj|BAI71005.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 151

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            ++K+  + I  ++  A +    P +  +I     I + +L ++LQ LV+ G++  VRG 
Sbjct: 3   RISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVREGVLAGVRGP 62

Query: 61  RGGVRLCRPADQITILDV---VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RGG RL R   +IT+ ++   V+A E +    E     +    ++G   +  +  +  + 
Sbjct: 63  RGGYRLARERRRITLGEIVKVVRAMETATDPIE-----EPAGSVLGHQVVRPLWGELQDE 117

Query: 118 FFDVLTQYSIECLV 131
               L   +IE L 
Sbjct: 118 CMAKLDTITIEDLC 131


>gi|310827114|ref|YP_003959471.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
 gi|308738848|gb|ADO36508.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
          Length = 134

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R++   A  +     +SQ+++   I + F +KI++ L +AG+V   RG 
Sbjct: 1   MLITRETDYALRLVRSLA--DGERRSVSQLSDEEQIPKAFAYKIIKKLERAGLVSIARGS 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118
            GG  L +P   I++ D++ A + S  ++ C  S      C   GSC   + L       
Sbjct: 59  EGGCSLNKPTSAISLYDLMCAIDGSCSLSPCMESGYRCEWCEKHGSCCFHNHLMVIQEEL 118

Query: 119 FDVLTQYSIECLVR 132
            D L   S+E +++
Sbjct: 119 NDRLKASSLEEILK 132


>gi|217077940|ref|YP_002335658.1| Rrf2 family protein [Thermosipho africanus TCF52B]
 gi|217037795|gb|ACJ76317.1| Rrf2 family protein [Thermosipho africanus TCF52B]
          Length = 148

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59
           M +T ++DY +R+L+  +I N   +    I++    I   F  KIL  LV +GI+E+ RG
Sbjct: 1   MAVTMKSDYALRLLLLLSIENKRMSTSELISKCKTSIPYEFAQKILSQLVASGILESSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +    IT+ D+V + ++   +  CF            C +  V    +  F 
Sbjct: 61  KFGGYKLVKDPKDITVYDIVTSVDDISSMITCFVPPDKISLAPEICSVNEVWEIVMKRFK 120

Query: 120 DVLTQYSIECL 130
             L   ++E L
Sbjct: 121 QSLKSVTLEDL 131


>gi|220928362|ref|YP_002505271.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Clostridium cellulolyticum H10]
 gi|219998690|gb|ACL75291.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulolyticum H10]
          Length = 148

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  ++  A    N     +  I+E   IS+++L ++   L ++ +V +V+
Sbjct: 1   MRISSKGRYGIAAMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVNSVK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L + +++IT  D+++A E S F   E   S + +        L  V  K   +
Sbjct: 61  GSQGGYHLAKSSERITAYDILQAVELSLFEKTERSVSAQAEGIEKSISSL--VWDKLDES 118

Query: 118 FFDVLTQYSIECLV 131
             +VL   ++  LV
Sbjct: 119 ICEVLKNTTLRDLV 132


>gi|225871965|ref|YP_002753419.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
 gi|225791981|gb|ACO32071.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
          Length = 145

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  R   G+  ++  A   D       IA     + + + ++   L  AG+V++ +G 
Sbjct: 1   MAVNTRFATGVHAMVLLAAEPDTLQTSETIAGRLETNPVVVRRVFSLLHHAGLVDSHKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG +L RPA QIT+ D+ KA +    F    FAS +       +  L  V +    +  
Sbjct: 61  SGGSKLARPAKQITLADIYKALDTGDLFHTAEFASEEAA---HTASALHQVFKNIERSLR 117

Query: 120 DVLTQYSIECL 130
           D L++ ++  +
Sbjct: 118 DELSKTTLSQI 128


>gi|310815934|ref|YP_003963898.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
           vulgare Y25]
 gi|308754669|gb|ADO42598.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
           vulgare Y25]
          Length = 142

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 13  VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L+  A+  +     + +I++   IS  +L ++   L +A +VE+ RG  GG +L RP D
Sbjct: 3   ALVDLALQPESALVNLGEISKRQDISLPYLEQLFVKLRRADLVESARGPGGGYKLARPMD 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           QI++ D+++A +E+       A          +  LT+ L + L+A  +  L Q  +  +
Sbjct: 63  QISVADILEAVDETVSAMHKGAGVSGGLSGSRAQSLTNRLWEGLSAQVYVFLHQTKLSDI 122

Query: 131 VRNR 134
           V+NR
Sbjct: 123 VKNR 126


>gi|327540342|gb|EGF26928.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 139

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 3/141 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R +         P     +AE   +   +L ++LQ L  AG+V +  G  G
Sbjct: 2   LSKTAEYALRAIACMGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  LC P D +TILDVV        + +C    K    L   C L + L +   A  +  
Sbjct: 62  GYELCVPTDTLTILDVVNTVAPVERIRKCPLGLKSHTDL---CPLHAELDRVYAATEEAF 118

Query: 123 TQYSIECLVRNRSSIKKIFNA 143
              +I+ LV + + I  +  +
Sbjct: 119 RGVTIDDLVNSTNPILPLCES 139


>gi|150025901|ref|YP_001296727.1| hypothetical protein FP1858 [Flavobacterium psychrophilum JIP02/86]
 gi|149772442|emb|CAL43924.1| Protein of unknown function YjeB [Flavobacterium psychrophilum
           JIP02/86]
          Length = 139

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   TD+ +R+LMY           + ++++   IS   L K++Q L K   + T RG
Sbjct: 1   MKLNHFTDFSMRILMYLNHQKEGKTTSLDELSDQFKISRNHLIKVVQFLSKNQYIHTKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNA 117
           + GG+ +      I + +++   E ++  +  C       C L    C L  + +    +
Sbjct: 61  KNGGIHISNETKTIPLGNLINILEQDNSPIINC---DSKPCVLAPHNCKLKYIFQLGYQS 117

Query: 118 FFDVLTQYSIECL 130
           F + L Q+++  L
Sbjct: 118 FINTLNQFTLSDL 130


>gi|152993458|ref|YP_001359179.1| BadM/Rrf2 family transcriptional regulator [Sulfurovum sp. NBC37-1]
 gi|151425319|dbj|BAF72822.1| transcriptional regulator, BadM/Rrf2 family [Sulfurovum sp.
           NBC37-1]
          Length = 132

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ T+Y +  L   +   D P    Q+A    I + FL KILQ + K GI+E+ +G 
Sbjct: 1   MLLTRATEYALLSLDSIS-KADKPVGAEQLANELNIPKSFLAKILQNMAKQGILESRKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
            GG  L +  + ITI  ++ A E     V +C +S+   CP    G+C ++  +      
Sbjct: 60  HGGFVLAQTINDITINSIIFAAEGKLPAVFDC-SSYSETCPNGAIGTCVISPFIANFQTK 118

Query: 118 FFDVLTQYSIECLV 131
             + L   ++  ++
Sbjct: 119 INNFLEGLTLGDIL 132


>gi|313669379|ref|YP_004049806.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156576|gb|ADR35253.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 137

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH +K  +Y IRVL Y   H++  + ++ + +   +   +L K++  LVK G+V   RGR
Sbjct: 1   MHFSKTAEYAIRVLSYLYRHHESSHSVNVLHQELVLPYKYLTKMVTDLVKKGLVNASRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
            GG+ L + ADQI + D+++A  E      C    +  C     C L    
Sbjct: 61  EGGISLAKNADQIRLRDILEAIGEPLEHERCILGFE-KCDASNPCALHEQW 110


>gi|302875321|ref|YP_003843954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
 gi|307688174|ref|ZP_07630620.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
          cellulovorans 743B]
 gi|302578178|gb|ADL52190.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          cellulovorans 743B]
          Length = 143

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ +  YG++ ++  A ++ +    I  I E   +SE +L +I   L K GI+   +G
Sbjct: 1  MKISTKGIYGLKAIVDLACYSVNEVVTIKSICERQGLSERYLEQIFSLLRKNGIIVGRKG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESF 86
           +GG  L +   ++T+ +++ A E   
Sbjct: 61 SQGGYTLAKKPKELTVYEILTALEGEL 87


>gi|292670938|ref|ZP_06604364.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
 gi|292647559|gb|EFF65531.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
           noxia ATCC 43541]
          Length = 147

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YG+  ++  A    +  P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGLAAMIVLARSYESSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L R   +IT  +++ + E    + E   +       +       +  +     
Sbjct: 61  GSQGGYQLSRHPREITAYEILSSIE--ISLIEKTGTVSEKMDQLNHVLARELFDQLDKNI 118

Query: 119 FDVLTQYSIECLV 131
           F+ L   ++E L+
Sbjct: 119 FETLNAITLEGLL 131


>gi|148378286|ref|YP_001252827.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
 gi|153933591|ref|YP_001382687.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936117|ref|YP_001386238.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|153937936|ref|YP_001389653.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|168177627|ref|ZP_02612291.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|170754327|ref|YP_001779938.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|226947508|ref|YP_002802599.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|148287770|emb|CAL81836.1| Rrf2-family transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929635|gb|ABS35135.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932031|gb|ABS37530.1| rrf2 family protein [Clostridium botulinum A str. Hall]
 gi|152933832|gb|ABS39330.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
 gi|169119539|gb|ACA43375.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
 gi|182670341|gb|EDT82315.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
 gi|226842307|gb|ACO84973.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
 gi|295317743|gb|ADF98120.1| rrf2 family protein [Clostridium botulinum F str. 230613]
 gi|322804550|emb|CBZ02101.1| rrf2 family transcriptional regulator, group III [Clostridium
           botulinum H04402 065]
          Length = 143

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L +AG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +  DQIT+LDV +A +  +   + +   S  I+CP+  +    +  VL  A  
Sbjct: 61  GGAYLL-KDLDQITLLDVYRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   ++E +V   R  IKK
Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143


>gi|37525899|ref|NP_929243.1| hypothetical protein plu1977 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785328|emb|CAE14270.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 154

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L   A+H+    R   IA++   +   + ++L  L +AG+  +  G+
Sbjct: 1   MPTSTRFAVAIHILTDIALHHGQAVRSEDIAKSVNTNPTVVRRLLGALAEAGLTYSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RP++QI++LD+ +A E+  +     +     C +  +    L     +     
Sbjct: 61  GGGALLARPSNQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNITPVLEDEFSRVTCVL 120

Query: 119 FDVLTQYSIECLVRN 133
              L + ++  +V  
Sbjct: 121 ETALAETTVADIVNR 135


>gi|262196227|ref|YP_003267436.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262079574|gb|ACY15543.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 140

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    + +L         P     IA +   +   + ++L  L KAG+  + RG  G
Sbjct: 1   MNTRFAVAVHILTLLQAQAGEPASSEWIAGSVNTNPALIRRLLSQLAKAGLTRSQRGAGG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           G  L R AD IT+ DV +A  +   V    A+    CP+       L   L+ A  A   
Sbjct: 61  GALLARSADSITLADVYQAVSDDADVIPIHAAPNPKCPVGRHIESALAVHLQAAEQALQV 120

Query: 121 VLTQYSIECLVRN 133
            L + +I  L ++
Sbjct: 121 ELARTTIASLTQD 133


>gi|170760968|ref|YP_001785621.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407957|gb|ACA56368.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 143

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   ++ +        IA +   + + + +++  L KAG+V  + G 
Sbjct: 1   MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKKAGLVSVIAGT 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +  DQIT+LDV +A E  +   + +   S  I+CP+  +    +  +L  A  
Sbjct: 61  GGAYLL-KDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGILLNAQE 119

Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
           A   VL   ++E +V   R  I+K
Sbjct: 120 AMEQVLENVTMEYVVAGIRKKIEK 143


>gi|288923812|ref|ZP_06417900.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
 gi|288344839|gb|EFC79280.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
          Length = 151

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V++ RG 
Sbjct: 1   MQISARADYALRALLTLAASDGNLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +LCRPA+ ITI  V++AT+                       L  V          
Sbjct: 61  DGGYQLCRPAEDITIATVIRATDGPLASVRGRPPETAHYEGAAK-HLQDVWIATRVNLRR 119

Query: 121 VLTQYSIECLVRNR 134
           VL   ++  +   +
Sbjct: 120 VLEAVTLADVASGK 133


>gi|28210311|ref|NP_781255.1| hypothetical protein CTC00575 [Clostridium tetani E88]
 gi|28202747|gb|AAO35192.1| conserved protein (RRF2 family protein) [Clostridium tetani E88]
          Length = 138

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M++T+  DYGIR ++  A   +        IAE   I   FL K+L+ L++AGIV + RG
Sbjct: 4   MNITQEADYGIRAVLILAKEGEGEKLDAKTIAERGNIPLRFLLKLLRKLIQAGIVRSYRG 63

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
             GG  L + ++ I + +V+++ +    V  C       +      C +   LRK  N F
Sbjct: 64  VNGGYALNKHSEDINLKEVIESIDGPIAVNRCITDKDFCNAKKTEICVVHKELRKVQNIF 123

Query: 119 FDVLTQYSIECL 130
              L + +   L
Sbjct: 124 VKELEKITFSKL 135


>gi|300772784|ref|ZP_07082654.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761087|gb|EFK57913.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 145

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 3   LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y +R +MY A          I +IAEA    E FL KILQ L K G++ + +G 
Sbjct: 4   FSKTCEYALRAVMYIAQCSQQGEKAGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 63

Query: 61  RGGVRLCRPADQI--TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            GG       +     + D+V++ + S     C       C     C L    +K     
Sbjct: 64  NGGFY--MDPEDTKRPLADIVRSIDGSQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKL 120

Query: 119 FDVLTQYSIE----CLVRNRSSIKK 139
             +L + SI      L++   ++ K
Sbjct: 121 SVMLQETSIGQFNMDLIQGNFTLSK 145


>gi|56696277|ref|YP_166634.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
 gi|56678014|gb|AAV94680.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
          Length = 164

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 10  GIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            +      A   +        +A    +SE +L K ++ L  AG+ E V G RGG RL R
Sbjct: 11  ALHCAAVLAELPEGKVLSGRDLAALHGVSESYLLKHMRALTAAGVTEAVPGPRGGFRLAR 70

Query: 69  PADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVLRKALNAFFDV 121
              Q+++LDVV+A +       C         +    C     C +   +  A  A+   
Sbjct: 71  APRQVSLLDVVEAVDGPGPAFVCREIRRKGDVTSNDPCAYRKDCFIKRRMLSAEQAWRTA 130

Query: 122 LTQYSIECLVRNRSS 136
           L   ++  L+ +  +
Sbjct: 131 LRGQTLADLMADARA 145


>gi|78776924|ref|YP_393239.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497464|gb|ABB44004.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           denitrificans DSM 1251]
          Length = 133

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ ++Y I  L+  +  +  P     ++    I + FL KILQ + K GI+++ +G 
Sbjct: 1   MLITRASEYAILSLIVLSKAS-APMDSETLSTQLSIPKSFLAKILQAMAKHGILKSFKGV 59

Query: 61  RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG  L      I +L V+ + E     V EC +     CP   +  C L   L K    
Sbjct: 60  NGGFSLLLEPKDIKMLQVIASVEGKAPAVFEC-SPSMYSCPSGKAQLCSLWPFLNKLQGK 118

Query: 118 FFDVLTQYSIECLVR 132
               L   ++  ++ 
Sbjct: 119 IDSFLADLTLADILE 133


>gi|209522489|ref|ZP_03271083.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
 gi|209497074|gb|EDZ97335.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
          Length = 149

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QIT+LDV +A E++             C +  +    L S++ +A  A 
Sbjct: 61  GGGALLARRPEQITLLDVYRAVEDAQLFGVHREEPNPACMVGRNIQGVLRSIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L   ++  
Sbjct: 121 EAALAGRTLAD 131


>gi|289434461|ref|YP_003464333.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170705|emb|CBH27245.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 141

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    ++ +       IA +   + + + +I+  L KAG++ +  G 
Sbjct: 1   MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            G   L + A +IT+ D+  A + +  + +   +   +C +  +    L +V   A    
Sbjct: 61  SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQM 119

Query: 119 FDVLTQYSIECL 130
              L + ++  +
Sbjct: 120 EADLKRTNLSQI 131


>gi|260654665|ref|ZP_05860155.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
 gi|260630681|gb|EEX48875.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
          Length = 133

 Score =  106 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P  +  IA+   +S+ +L +++  L +AG++ + RG  GG  L +   +ITIL++V+A+ 
Sbjct: 14  PVSVMDIAQREELSDTYLEQLVSKLRRAGLLRSYRGANGGYELAKDPSEITILEIVQASG 73

Query: 84  ESFFVAECFASHKIDCPLV----GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           E     EC  + K  C L       C      RK  +A  ++    ++E L+   S 
Sbjct: 74  EKLEFPECAFNEKG-CELARQRGSVCPSAFFWRKLSSAVLELSRSMTLEDLLSQSSK 129


>gi|167772123|ref|ZP_02444176.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
           17241]
 gi|167665921|gb|EDS10051.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
           17241]
          Length = 130

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T   DY +R++   A H         ++ A  ++  F  KIL+ LV  GIV + +G 
Sbjct: 1   MYITLEADYAVRIVDCLAQHQ-MRMDAKSLSAATGVTLRFALKILRKLVAEGIVRSYKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
           +GG  L RPA +I + +V++  E    ++ C       C  V  C 
Sbjct: 60  QGGYELARPAGEIALGEVIEIVEGPIVISRCVGDDTFQCSRVEKCA 105


>gi|58617149|ref|YP_196348.1| hypothetical protein ERGA_CDS_04220 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416761|emb|CAI27874.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 145

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
            P RIS IA    +SE +L +++  L K G++   +G  GG  L      IT+  ++++ 
Sbjct: 18  QPVRISYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESI 77

Query: 83  EESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
            E+  +  C  ++  DC      C    +     N   D L   S+E +V N 
Sbjct: 78  GENIKITRC-ENNSPDCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 129


>gi|260655751|ref|ZP_05861220.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
 gi|260629367|gb|EEX47561.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
          Length = 152

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G+  L+      + P     ++E+   S+  L K+LQ L  AG V  +RG  GG +L   
Sbjct: 4   GLHALVALGREPEQPRTTETLSESIGCSKTHLSKVLQKLCHAGYVTALRGPGGGYQLALR 63

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            ++I +L V +     F    C   H  +      C + +++ +   AF D L   +   
Sbjct: 64  PEKICMLHVFELLGGPFIPTGCTVDHHQN----EPCLIGAMMDELTIAFRDYLATKTFYH 119

Query: 130 LVR 132
           L+R
Sbjct: 120 LLR 122


>gi|329945233|ref|ZP_08293064.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529276|gb|EGF56197.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 165

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K  ++    L+   +        + +A    +S  +L K LQ L  AGIV +V G 
Sbjct: 1   MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
            GG RL +PA ++++ DVV A   +  + +C        F   K      G C +   + 
Sbjct: 61  SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFVDQKSRILASGLCSINRAMS 120

Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIFNA 143
            A +A+   L   SI  L    + ++  ++  A
Sbjct: 121 LAEDAWRASLAGTSIADLAAGLDNATRTRMLQA 153


>gi|86742249|ref|YP_482649.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
 gi|86569111|gb|ABD12920.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
          Length = 151

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  N    +   +A A  +   FL  IL  L +AG+V++ RG 
Sbjct: 1   MQISARADYALRALLTLAASNGRLVKGEALAAAQDLPLRFLENILTDLRRAGLVQSRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L  P ++ITI  V++AT+              +        L  V          
Sbjct: 61  DGGYQLSLPPERITIATVIRATDGPLASVRGRRPEDTNYDGAAK-HLQDVWIAVRVNLRR 119

Query: 121 VLTQYSIECLVRNR 134
           VL   ++  +   +
Sbjct: 120 VLEAVTLADVASGQ 133


>gi|89054908|ref|YP_510359.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864457|gb|ABD55334.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 141

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R      +L   A+  D P     IA+    +   + KI+  L ++GI  +  G 
Sbjct: 1   MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
           +GG  L R  +QIT+LDV +A +     A         CP+    G  L  V  KA  A 
Sbjct: 61  KGGTHLARAPEQITLLDVYRAVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAM 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
              L   SI  +      +
Sbjct: 121 EAELAAVSIAAIADKLKPL 139


>gi|149180394|ref|ZP_01858899.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           sp. SG-1]
 gi|148852586|gb|EDL66731.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           sp. SG-1]
          Length = 141

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++       +  L+Y A   D+      IA+    + + + KI+  L   G V+T  G 
Sbjct: 1   MYVNSEFTIAVHSLVYLAYLPDHMASSQAIAQNVATNPVRVRKIMSCLRDTGFVKTKEGT 60

Query: 61  RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
            GG  L      IT+  V ++    +     C    +  C +  +    +  +  +A   
Sbjct: 61  GGGYTLTAEPGDITLGQVYRSVSYGAIKPTWCKGEREESCLISTNIQEVVNGIFTEADQY 120

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F + L + +IE ++      +
Sbjct: 121 FAEYLDKTTIESVLNQIRQTR 141


>gi|260464287|ref|ZP_05812479.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
 gi|259029911|gb|EEW31195.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
           opportunistum WSM2075]
          Length = 172

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +  +  I      A +  +     + +AE+  +S  +L K L  L  A I+E+V G
Sbjct: 1   MKLGEGVEAAIHCAATLASVEGNSTMPGAALAESFGLSPSYLLKHLNMLTAARILESVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113
             GG RL +PA++IT+LD+V A E       C    +     + +      CG+ + + K
Sbjct: 61  PAGGYRLAKPAERITLLDIVLAVEGREPAFRCGEIRRNGPVKLDASAYVKPCGINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+   L +  +  +V 
Sbjct: 121 AERAYRAALAETRLSDIVA 139


>gi|284034151|ref|YP_003384082.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
           17836]
 gi|283813444|gb|ADB35283.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
           17836]
          Length = 158

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            ++G+   +  +          ++A    +   +L K LQ L +AGI+ +  G +GG +L
Sbjct: 5   VEWGMHTCVNLSWMPGEALPAKKLAAFYELPTAYLNKQLQALTRAGILSSTSGPKGGFQL 64

Query: 67  CRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVG---SCGLTSVLRKALNAFFD 120
            RP D+IT+LD+V A +       C     +     P      +C ++  +R+A   +  
Sbjct: 65  ARPTDRITLLDIVVAIDGPDEAFRCTEILKAGPGADPREDYRTTCLISQAMRQAELVYRR 124

Query: 121 VLTQYSIECLVRN 133
            L   +I  +V +
Sbjct: 125 ELAARTIADIVAD 137


>gi|312194978|ref|YP_004015039.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226314|gb|ADP79169.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
          Length = 151

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R DY +R L+  A  +    +   +A A  +   FL  IL  L ++G+V + RG 
Sbjct: 1   MQISARADYALRALLTLAASDGGLVKGETLASAQDLPLRFLENILTDLRRSGLVASRRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG +L RPA +I +  V++AT+            ++         L  V      +   
Sbjct: 61  EGGYQLARPAAEIDVATVIRATDGPLAGVRGRRPEEVTYEGAAK-NLQDVWIAVRVSLRQ 119

Query: 121 VLTQYSIECLVRNR 134
           VL   ++  +    
Sbjct: 120 VLESVTLADIASGE 133


>gi|153812327|ref|ZP_01964995.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
 gi|149831489|gb|EDM86576.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
          Length = 134

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RVL   A   +    +++I E   I+  F +KIL+ L K+G+V   RG 
Sbjct: 1   MLITRECDYAVRVLRAMA--EEKRVSVNEICEKELITAPFAYKILKKLQKSGMVRGYRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116
            GG  L    DQIT+ DV    +   F+ +C      DC    +    C +   L +   
Sbjct: 59  HGGYSLNCDLDQITLYDVYTTIDPGMFIIDCLEPG-YDCARNSADGQNCSVHCELAEIQE 117

Query: 117 AFFDVLTQYSIECLVR 132
               +L + S++ L+ 
Sbjct: 118 ELCRMLKRKSLKKLIN 133


>gi|15605808|ref|NP_213185.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
 gi|2982976|gb|AAC06590.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
          Length = 156

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D   ++ +IA+   I   FL K++  L K G+V +V+G RGG  L +  D+ITI D++
Sbjct: 32  NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 91

Query: 80  KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132
           +   +++    C            + C +     +  +   D     +I+ L+ 
Sbjct: 92  ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 145


>gi|20140436|sp|O66625|Y268_AQUAE RecName: Full=Putative HTH-type transcriptional regulator aq_268
          Length = 144

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D   ++ +IA+   I   FL K++  L K G+V +V+G RGG  L +  D+ITI D++
Sbjct: 20  NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 79

Query: 80  KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132
           +   +++    C            + C +     +  +   D     +I+ L+ 
Sbjct: 80  ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 133


>gi|313618824|gb|EFR90710.1| Rrf2 family protein [Listeria innocua FSL S4-378]
          Length = 83

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1  MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60 RRGGVRLCRPADQITILDVVKAT 82
            GG  L    ++IT  D+++  
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTL 83


>gi|302875241|ref|YP_003843874.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
 gi|307687906|ref|ZP_07630352.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
           cellulovorans 743B]
 gi|302578098|gb|ADL52110.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           cellulovorans 743B]
          Length = 132

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY +R ++  A           IAE+C I   FL K+L+ L KA +V + RG 
Sbjct: 1   MKITQESDYALRAVVNIAEKYPNKIEAKVIAESCDIPLRFLLKLLRKLTKAHVVRSYRGI 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
            GG  L    + IT+  V++A E    + +C    ++ C     G C ++  LRK   + 
Sbjct: 61  NGGYALATNPEDITMASVIEAIEGPIILNKCIQDKEL-CSNNRKGKCNISMELRKIQESL 119

Query: 119 FDVLTQYSIECLV 131
              L    I  L+
Sbjct: 120 LKELRSRKISDLL 132


>gi|282901029|ref|ZP_06308962.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194120|gb|EFA69084.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 160

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+ + +Y +  L+  AI++       I+ IA    I E +L +IL  L +AG+V++ RG 
Sbjct: 20  LSAKVEYALLALLELAINHGKKVTLTINDIAAKQPIPERYLEQILTQLRRAGVVQSQRGS 79

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +GG  L R   +I++L++V   E              +   +    +  +  +A  A  +
Sbjct: 80  KGGFLLVREPWEISLLEIVSLIEGERN-----EKRNANVLTIEKTLVWEIWERANTASVE 134

Query: 121 VLTQYSIECLVRNRS 135
           VL +Y+++ L + R 
Sbjct: 135 VLGRYTLQDLCQERE 149


>gi|153814508|ref|ZP_01967176.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
 gi|145848002|gb|EDK24920.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
          Length = 95

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 47  PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105
            L KAGIV +VRG  GG  L +  + I++ DV++A E S    +C        C +  SC
Sbjct: 1   MLKKAGIVRSVRGAGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSC 60

Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNR 134
               V +K  ++    + +  ++ LV+  
Sbjct: 61  VTKYVWKKINDSINQTVDEIKLDQLVKEN 89


>gi|330717994|ref|ZP_08312594.1| transcriptional regulator [Leuconostoc fallax KCTC 3537]
          Length = 153

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++  +  + VL+  A+  D  P +   ++    +SE +  K ++ L  AGIV  +  
Sbjct: 1   MKMSQAVEQSLVVLIMLAVQQDNAPVKSHILSSRLEVSESYFKKTMRKLRIAGIVTAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           + GG +L RP  QIT+LDV +A E       S  +A+       +    G+  + +++  
Sbjct: 61  KEGGFKLARPLHQITLLDVYEAIEGEDSFIHSTQLADRIFKGSDELVKSGTKEVLAIIYD 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  AF   L  Y+I  ++ +
Sbjct: 121 AEQAFKQKLADYTIADILSH 140


>gi|312196443|ref|YP_004016504.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227779|gb|ADP80634.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
          Length = 159

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+   +  +   +      + P   +++AE   +S  +L K LQ L +A +V++V+G+
Sbjct: 1   MRLSGGVETALHCCVVLTAAAE-PVPAARLAELHGVSATYLAKQLQALSRARLVQSVQGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
            GG  L RP ++I +LDVV+A + +     C                   C +   +  A
Sbjct: 60  AGGYVLTRPPEEIKVLDVVEAVDGAAPTFVCTEIRQRGPLAAPPEACAAPCAIKRTMIAA 119

Query: 115 LNAFFDVLTQYSIECLVR 132
             A+  VL + S+  L R
Sbjct: 120 DQAWRAVLREVSVADLAR 137


>gi|292669316|ref|ZP_06602742.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
           43541]
 gi|292649157|gb|EFF67129.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
           43541]
          Length = 147

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L+   +++ D P     +A +  +  + + +IL  L +AG++   RG
Sbjct: 1   MQISSRFTIAIHILICVDLYSADAPATSESLAGSIGVHPVVIRRILGQLRRAGLITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
           R GG  + RP  +IT+ D+ +A E   S  +     +    CP+  +    L   L +  
Sbjct: 61  REGGAHIVRPLGEITLADIFRAVESIGSDTLFSFHENPNPACPVGRNIHNVLDGHLAQIQ 120

Query: 116 NAFFDVLTQYSIECLVRN 133
            A    + Q ++  ++  
Sbjct: 121 RAMEHSMEQTTLADVIAE 138


>gi|116872585|ref|YP_849366.1| transcriptional regulator Rrf2 family protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741463|emb|CAK20587.1| transcriptional regulator Rrf2 family protein, putative [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 141

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    ++ +       IA +   + + + +I+  L KAG++++  G 
Sbjct: 1   MAISTRFSVAVHILTLIDMNKERSITSDTIAASVNTNPVVIRRIMSKLKKAGLIQSSPGI 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            G   L + A +IT+ D+ +A E +  + +   +   +C +  +    L +V   A    
Sbjct: 61  SGTYLL-KNATEITLYDIYQAVEVTDNLFDIHKNPNPNCEVGANIQETLDTVFIHAQQKM 119

Query: 119 FDVLTQYSIECLVRN 133
              L + ++  +  +
Sbjct: 120 EADLKRTTLSQITAD 134


>gi|163752875|ref|ZP_02159999.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
           algicida OT-1]
 gi|161326607|gb|EDP97932.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
           algicida OT-1]
          Length = 137

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YG++ L Y A   D  P  IS+IA    IS+ FL  IL  L   G++ + +G+ 
Sbjct: 2   LSKKTKYGLKALTYIARKGDEAPVLISEIATEEKISKKFLEAILLQLKNNGLLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  D+I I  +++  E    +  C    F     DCP    CGL  ++ +  + 
Sbjct: 62  GGYYLIKTPDEIKIASLIRILEGPIAMLPCVSLNFYEKCDDCPDETKCGLHQLMLEVRDN 121

Query: 118 FFDVLTQYSIECL 130
              VL   ++E L
Sbjct: 122 MLAVLDNKTLEDL 134


>gi|313638249|gb|EFS03485.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
          Length = 141

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    ++ +       IA +   + + + +I+  L KA ++ +  G 
Sbjct: 1   MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKARLIHSSPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
            G   L + A +IT+ D+  A + +  + +   +   +C +  +  +T  +V   A    
Sbjct: 61  SGTYLL-KEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 119

Query: 119 FDVLTQYSIECLVRN 133
              L Q ++  +  N
Sbjct: 120 EADLKQTNLSQITAN 134


>gi|307324043|ref|ZP_07603252.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890492|gb|EFN21469.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 152

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ + DY +R  +  A    D   +   IA A  I   FL  IL  L + G+V + RG
Sbjct: 1   MRISAKADYAVRAALELAAAGADTSVKAEVIAGAQGIPHKFLEGILGDLRRGGLVASQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
             GG RL RPAD I+I +V++  +            ++  C    S  L  +        
Sbjct: 61  GNGGYRLARPADTISIAEVIRVVDGPLVSVRGVRPPELSYCGPAES--LLPLWIAVRANV 118

Query: 119 FDVLTQYSIECLVRNR 134
             +L + ++  +   R
Sbjct: 119 RKILGEVTLAEVAAAR 134


>gi|83595124|ref|YP_428876.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
           ATCC 11170]
 gi|83578038|gb|ABC24589.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
           ATCC 11170]
          Length = 151

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+K+  + I  ++  A H    P +  +I     I   +L + LQ LV++G++  VRG 
Sbjct: 3   RLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHLVRSGVLTGVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG RL R   +ITI ++V+   +   + E  A  ++    +G   +  +  +  +    
Sbjct: 63  RGGYRLARERRRITIGEIVRVVRDLEAIDE--AVDELPGSDLGRQVVRPLWNELHDELMV 120

Query: 121 VLTQYSIECLV 131
            L   +++ L 
Sbjct: 121 KLDTLTVDDLC 131


>gi|256026414|ref|ZP_05440248.1| hypothetical protein PrD11_00165 [Fusobacterium sp. D11]
 gi|260494511|ref|ZP_05814641.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
 gi|289764429|ref|ZP_06523807.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|260197673|gb|EEW95190.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
 gi|289715984|gb|EFD79996.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 140

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N + ++
Sbjct: 121 DDFDKINFYDLVENNTGLE 139


>gi|154174055|ref|YP_001408761.1| RRF2 family protein [Campylobacter curvus 525.92]
 gi|112802637|gb|EAT99981.1| RRF2 family protein [Campylobacter curvus 525.92]
          Length = 138

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +    I +L+      D       IA +   + + + K+ Q L KAG++E   G 
Sbjct: 1   MQVGTKFSVSIHILLSAEFFKDEKVTSEFIASSVGTNPVIIRKLTQLLKKAGLLEVRAGV 60

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
            GGV L +  +QIT+LDV +A  +E   + +  A     CPL G  G  L S    A NA
Sbjct: 61  -GGVNLAKKPEQITLLDVYQAVSDEEKNLFKIHAKSPAACPLGGKIGNLLNSHFLSAQNA 119

Query: 118 FFDVLTQYSIECLVRN 133
               L + +++ L+  
Sbjct: 120 MQKELGKVTLQDLLDE 135


>gi|315302753|ref|ZP_07873529.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
 gi|313628876|gb|EFR97233.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
          Length = 140

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ R    + +L    I+ +       IA +   + + + +I+  L KAG++ +  G  G
Sbjct: 2   ISTRFSVAVHILTLIDINQERAITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGVSG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
              L + A +IT+ D+  A + +  + +   +   +C +  +    L +V   A      
Sbjct: 62  TYLL-KAASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQMEA 120

Query: 121 VLTQYSIECLVRN 133
            L + ++  +  N
Sbjct: 121 DLKRTNLSQITAN 133


>gi|157827110|ref|YP_001496174.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii OSU 85-389]
 gi|157802414|gb|ABV79137.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           bellii OSU 85-389]
          Length = 128

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 13  VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            ++  A +  D P  +++I+    IS  +L +I   L KA +V+ +RG  GG  L    +
Sbjct: 2   AILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRGPNGGYILIGKLE 61

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIEC 129
           +I I +++ A  E+F +  C+     +C      C    + +       D     S++ 
Sbjct: 62  EIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHIRDYFENISVKD 120


>gi|320159837|ref|YP_004173061.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
 gi|319993690|dbj|BAJ62461.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
           UNI-1]
          Length = 146

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 2   HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +++R DYG+++++  A    + P   + +AE   I   FL +I + L+++G +    G 
Sbjct: 3   RVSRRIDYGVQLMIALAQTEAERPVPTAVLAEKLHIPLPFLHQIGRSLIQSGYIRATPGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGG+RL +  + I++L +++A E    +      + +            V  +       
Sbjct: 63  RGGLRLKQSPENISLLQIIEALEGPMRIVPESNGNGM--------MTREVWAELQEKVVA 114

Query: 121 VLTQYSIECLVRNRSS 136
            L    +  L +    
Sbjct: 115 ALASIRLSELAKKAPQ 130


>gi|239627234|ref|ZP_04670265.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517380|gb|EEQ57246.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 133

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY +R++   A+ +     I QI +   +   F +KIL+ L KAG+V   RG 
Sbjct: 1   MMITRESDYAVRMIR--ALKDGEQLTIGQICQKEQVPRQFAYKILKKLEKAGLVLIRRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG  L +  D +T+LDV++AT+E FF+  C       C        +C +   L +   
Sbjct: 59  GGGCNLGQSLDVLTLLDVIRATDEEFFLNPCL-REGYRCEYADGSGHNCTVHCELARVQA 117

Query: 117 AFFDVLTQYSIECL 130
                L   ++  L
Sbjct: 118 ILERELKHRTLAEL 131


>gi|157825855|ref|YP_001493575.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           akari str. Hartford]
 gi|157799813|gb|ABV75067.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           akari str. Hartford]
          Length = 128

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 13  VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            ++  A  +   P  +++I+    IS  +L +I   L KA +V+ +RG +GG  L    +
Sbjct: 2   AILEIATKSSAAPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYVLIGNLE 61

Query: 72  QITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           +I I D++ A  E+F +  C+      C P    C    + +       D     SI+ 
Sbjct: 62  EIKISDIMDAVNENFIMTTCYKKSVKTCVPDTVKCNSHKLWKGLGKHIRDYFENISIKD 120


>gi|86608330|ref|YP_477092.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556872|gb|ABD01829.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 146

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y +  L+  A H  +    +I +IA    I + +L ++L  L + G+V + R
Sbjct: 1   MELSCKSEYALLALLELAQHYSDGQVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G +GG  L R   QI++LDV++A E      +    S  +         L    + A  A
Sbjct: 61  GSKGGYFLARAPWQISLLDVIQAIEGEDLSRSRDLPSGDLTPERE---VLLKAWQDAQAA 117

Query: 118 FFDVLTQYSIECLVR 132
              +L + +++ L  
Sbjct: 118 AVAILQKTTLQDLCD 132


>gi|220908247|ref|YP_002483558.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7425]
 gi|219864858|gb|ACL45197.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7425]
          Length = 147

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
            P + + IA    I+  +L +IL  L +AGIV + RG  GG  L R   +IT+ DV    
Sbjct: 27  QPLKANAIAARQEIASRYLEQILSMLRQAGIVASYRGAAGGYTLARDPSEITVWDVFSCL 86

Query: 83  EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
           E      +       +        L  + +++  A  +VL Q +++ L+  R   K+
Sbjct: 87  EGETINKQPAPDGPPNLTKE---ILQEIWQQSTTAAQNVLQQITLQDLLIRRKEYKQ 140


>gi|297620718|ref|YP_003708855.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
           WSU 86-1044]
 gi|297376019|gb|ADI37849.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
           WSU 86-1044]
          Length = 144

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+  ++Y +R+++  A   +    +  ++A+   +SE +  KILQ L +AG+V+  +G  
Sbjct: 2   LSSTSEYALRIMVILAHQKENSFLKGKELAKETKVSEAYSAKILQLLNRAGLVQAQKGLG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118
           GG  L R AD+I++ D++ A +      EC    A HK  CP      L   L      F
Sbjct: 62  GGYLLSRSADEISLFDIINAVDPFTRFDECPLGIAEHKTLCP------LHRKLDNVYADF 115

Query: 119 FDVLTQYSIECLVRNRSS 136
             +    S+    +NR  
Sbjct: 116 QKIFKDCSLSTFSKNREQ 133


>gi|56964902|ref|YP_176633.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911145|dbj|BAD65672.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 169

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  + +L+  A        +   I+    +S  +L KI++ LV + ++ +V G
Sbjct: 1   MKIKSGVEQAVCILVILATQTGQQHVKSDTISARLRVSPSYLKKIMRKLVISKLITSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
             GG  L +  + IT+LD+++A E +    +          +I     GS  L ++  +A
Sbjct: 61  NSGGFALAKSPEAITMLDILEAIEGTSPFFQTEGLIQYVFPEIPAAEAGSKRLEAIFLEA 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
              +   L + ++   +    + +KI
Sbjct: 121 QEQYMASLAKTTLAEAIHQTLNREKI 146


>gi|282897323|ref|ZP_06305325.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
 gi|281197975|gb|EFA72869.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
           D9]
          Length = 160

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             I+ IA    I E +L +IL  L +AGIV++ RG +GG  L R   +I++L++V   E 
Sbjct: 44  LTINDIAAKQPIPERYLEQILTQLRRAGIVQSQRGSKGGFLLVREPWEISLLEIVTLIEG 103

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
                            +    +  +  +A  A  +VL +Y+++ L + R 
Sbjct: 104 ERN-----EKRNAKVLTIEKSLVWEIWERANIASVEVLGRYTLQDLCQERE 149


>gi|160937566|ref|ZP_02084927.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439635|gb|EDP17385.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
           BAA-613]
          Length = 135

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ +DY IR++   A+ +     + QI +   + + F +KIL+ L ++G+V   RG 
Sbjct: 1   MMITRESDYAIRIIR--ALKDGELLPLEQICQRELVPKQFAYKILKKLERSGLVSIRRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
            GG  L R    +T+LD++KA +E FF+  C  S +  C    S   C +   L +    
Sbjct: 59  GGGCILNRSLADLTLLDIIKAADEEFFLNPCLDS-QYQCGYAASFDGCKVHCELARVQRV 117

Query: 118 FFDVLTQYSIECL 130
             + L + S++ L
Sbjct: 118 LEEELKRTSLDRL 130


>gi|256421070|ref|YP_003121723.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
           DSM 2588]
 gi|256035978|gb|ACU59522.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
           DSM 2588]
          Length = 142

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y    L++ A + D  P  IS+IA+   IS  FL  IL  L  AGI+ + +G+ 
Sbjct: 2   LSKKTQYAFHALIHLAENADKGPILISEIAQEKSISIKFLENILLELKNAGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  +++  + +  +  C +        +C     CGL  V+ K  +A
Sbjct: 62  GGYYLLKTPKEIPLAKIIRLLDGAIALLPCVSLNYYEKCENCRDEAVCGLNDVMGKVRDA 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +L   +++ ++    SI
Sbjct: 122 TLKILETKTLKDILTRNVSI 141


>gi|292654129|ref|YP_003534027.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
           volcanii DS2]
 gi|291369713|gb|ADE01941.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
           volcanii DS2]
          Length = 147

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R      VL   A+ +D      ++A +   + + + ++L  L +A +V++ RG 
Sbjct: 1   MSNSSRFVVATHVLTNLAVRSDERLSSDRLAWSVNTNPVVIRQLLCSLREADLVDSKRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L    D IT+ D+ +A E++     CF       +C +       L  +L  A+ 
Sbjct: 61  TGGFTLAHEPDAITLRDIYEAVEDAEPF--CFHTNEPNDECTVGEHIQPVLGELLEPAIQ 118

Query: 117 AFFDVLTQYSIECL 130
           A  D L   ++  +
Sbjct: 119 AMLDELDSVTVADV 132


>gi|157165239|ref|YP_001467135.1| Rrf2 family protein (putative transcriptional regulator)
           [Campylobacter concisus 13826]
 gi|112801375|gb|EAT98719.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter concisus
           13826]
          Length = 134

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+  +     P  +  I+    IS+ FL KILQ L K G++++ +G 
Sbjct: 1   MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKDGVLKSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG  L    + ++I  +++  E+    V EC +S  + CP     SC + S+       
Sbjct: 60  NGGFALNGEPENLSIKKIIECAEKRELSVFECSSS-ALGCPSNKASSCQIWSMFSGLQGK 118

Query: 118 FFDVLTQYSIECLVRN 133
             ++L    +  +V+ 
Sbjct: 119 IDEMLDAIKLSDIVKK 134


>gi|318041035|ref|ZP_07972991.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
           CB0101]
          Length = 142

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 24/146 (16%)

Query: 1   MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + +T YG+  LM  A    +    ++S+IA    I E +L +++  L ++GI+ ++R
Sbjct: 1   MGFSAKTTYGLLALMELADVAGSGERLQVSEIAARQAIPERYLEQMMTSLRRSGILRSIR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG +L + ADQI + +V+   E      +  +                  R+ +NA 
Sbjct: 61  GARGGYQLAKAADQILLSEVILCLEGEPNTVDPSSGSPE--------------RQVINAL 106

Query: 119 FDVLTQ--------YSIECLVRNRSS 136
            D L +         ++  L  +R +
Sbjct: 107 ADELRRQRTTRLAATTLADLQHDRDA 132


>gi|111225126|ref|YP_715920.1| RRF2 family protein [Frankia alni ACN14a]
 gi|111152658|emb|CAJ64399.1| RRF2 family protein [Frankia alni ACN14a]
          Length = 135

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A  +    +   +A A  +   FL  IL  L +AG+V++ RG  GG +L RPADQIT+ 
Sbjct: 1   MAASDGQLVKGESLALAQDLPLRFLENILTDLRRAGLVQSRRGADGGYQLGRPADQITVA 60

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
            V++ T+            +  C    +  L  V          VL   ++  +   R
Sbjct: 61  TVIRVTDGPLASVR-GRRPEDACYEGAAKNLQDVWIAVRVNLRRVLENVTLAEVAGGR 117


>gi|237744648|ref|ZP_04575129.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431877|gb|EEO42089.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 140

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +   
Sbjct: 61  AKGGYILTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N + ++
Sbjct: 121 DDFDKINFYDLVENNTGLE 139


>gi|322389974|ref|ZP_08063513.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
 gi|321143287|gb|EFX38726.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 903]
          Length = 149

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +        +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  L + +D+I++LD+ +A E    +  +     +    CP+  +  + +VL     
Sbjct: 61  -TGGAELAKASDEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
               A    ++Q +++ +V +
Sbjct: 118 DIQTAMEKEMSQTTLKDVVED 138


>gi|85709197|ref|ZP_01040263.1| Rrf2 family protein [Erythrobacter sp. NAP1]
 gi|85690731|gb|EAQ30734.1| Rrf2 family protein [Erythrobacter sp. NAP1]
          Length = 162

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  ++   V    A+  +     +  +AE   +   +L K +Q L +AGI ++VRG
Sbjct: 1   MQLAKGIEWTTHVCTIIALLPEGKGLSVDALAEFFELPAAYLSKQMQALRRAGIAQSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
           + GG RL +  D IT+LD+V A E       C        C L  S     C + +    
Sbjct: 61  KGGGYRLAQSPDAITLLDIVIAIEGPSPAFRCTEIRQNGPCGLERSECKRPCEIAAAFAA 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A+   L   ++  +++ 
Sbjct: 121 AEQAYRSALESKTLASIMQE 140


>gi|319782786|ref|YP_004142262.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168674|gb|ADV12212.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 167

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +  +  I      A +  +     + +AEA  +S  +L K L  L  A ++E+V G
Sbjct: 1   MKLGEGVEAAIHCAATLASVEGNSTMPGAALAEAFGLSPSYLLKHLNMLSAARVLESVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK------IDCPLVGSCGLTSVLRK 113
             GG RL RPA++IT+LD+V A E       C    +           V  CG+ + + K
Sbjct: 61  PAGGYRLARPAERITLLDIVLAVEGREPAFRCGEIRQRGPVKLDASAYVKPCGINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A+   L +  +  +V 
Sbjct: 121 AERAYRAALAETKLSDIVA 139


>gi|300866831|ref|ZP_07111509.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335181|emb|CBN56669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 146

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           +   P +I  IA    I + +L ++L  L + G++ + RG +GG  L R   +IT+L+++
Sbjct: 23  NEGEPLQIRSIASQQNIPDRYLEQLLATLRRGGVIRSQRGAKGGYLLAREPWKITLLEIL 82

Query: 80  KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
              E +       + +      + S  +  V ++A      VL +Y+++ L    ++ ++
Sbjct: 83  NCLEGADMD---RSENNSTTKTLESAVVFEVWQEAREIANSVLQKYTLQDLTERLNARRQ 139

Query: 140 I 140
           +
Sbjct: 140 L 140


>gi|226312193|ref|YP_002772087.1| hypothetical protein BBR47_26060 [Brevibacillus brevis NBRC 100599]
 gi|226095141|dbj|BAH43583.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 146

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   +I ++       IA +   + + + ++L  L KAG+V  VR  
Sbjct: 1   MKISSRFSIAVHILSLLSIDSNSHCTSEWIAGSVNTNPVVIRRVLGLLKKAGLVN-VRAG 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +  DQIT+L++ +A +  E   +         DCP+  +    L  +L +A +
Sbjct: 60  AGGASLAKELDQITLLEIYRAVDVVEEGQLFHIHEQPNPDCPVGANIQFVLELILTRAQH 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A  ++L    +  LV N
Sbjct: 120 AMEEILGGVKMSELVDN 136


>gi|163783457|ref|ZP_02178448.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881221|gb|EDP74734.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 144

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H D   +  +IA+A  I + FL KIL  L +  ++ +V+G +GG  L    +++T+ DVV
Sbjct: 20  HRDRLVKADEIAKAQNIPKPFLSKILHELARRDVLHSVKGPKGGFALKTDPEKLTMWDVV 79

Query: 80  KATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFFDVLTQYSIECLVR-NRSS 136
               E +    C       C +     C +     K      D L   +I  LV      
Sbjct: 80  SLMGEDYRFQACVLMPD-KCEVYETNPCVVHHRWEKLKRKIVDFLKNTTIADLVSVEERH 138

Query: 137 IKKIFN 142
           +  + +
Sbjct: 139 LADLLS 144


>gi|198284817|ref|YP_002221138.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667768|ref|YP_002427503.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249338|gb|ACH84931.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519981|gb|ACK80567.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 146

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K ++Y +R L+Y A      P     I++    S   + K+L+ L K GI+ +V+G
Sbjct: 1   MMLSKASEYALRSLIYLAAQPSGRPVLSRDISDYIGGSAPCVTKVLRCLAKRGILYSVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
           + GG  L   A+ + I+DV++ TE       C   H  DC    + C L        +  
Sbjct: 61  KGGGYMLRPGAESLNIIDVIEITEGRPLEIRCILGH--DCVRNTTLCPLHPQWEAIKSRE 118

Query: 119 FDVLTQYSI 127
              L   ++
Sbjct: 119 MGFLRGQTV 127


>gi|62262806|gb|AAX78104.1| unknown protein [synthetic construct]
          Length = 171

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++IAE   ++   + K+L  L  A IV + RG  
Sbjct: 29  KISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGIE 88

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    +
Sbjct: 89  GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 146

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 147 LSKTSIYDIVNNKDK 161


>gi|168703183|ref|ZP_02735460.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 136

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 14  LMYCAIHND--YPNRISQIAEACCIS-ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           ++  A H     P R++ IA    IS   FL +IL  L K G+V + RG  GG  + R  
Sbjct: 1   MLELAAHYGDPKPVRLTDIANKHGISSPRFLVQILIQLNKDGLVTSTRGAAGGYHIARAP 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD-------VLT 123
             IT+ DV+ A E +        + K   PL  +  L  V  +   A  D       +L 
Sbjct: 61  SAITLADVIAAVEGTEQAGTRTKARKPTSPLAAA--LDDVWDRVRTAHEDFLLKQAAILK 118

Query: 124 QYSIECLVRNRSSIKKIF 141
             ++  LV +   ++ + 
Sbjct: 119 STTLAQLVDSGEPLQYVI 136


>gi|256424752|ref|YP_003125405.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
           DSM 2588]
 gi|256039660|gb|ACU63204.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
           DSM 2588]
          Length = 144

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR +++ A    +     I  IA+     E F+ KILQ L + G+V++++G 
Sbjct: 2   FSKTCEYAIRAMIFIAQKSKDGSKIGIRDIAKGIDSPEYFIAKILQELGRKGVVQSMKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   A + ++  +VKA +     + C    K  C     C L     K      +
Sbjct: 62  TGGFYLDNSARKTSLATIVKAVDGDNIFSGCGLGLK-QCSDKHPCPLHHEFTKIRKDITN 120

Query: 121 VLTQYSIECL 130
           +L +  +  L
Sbjct: 121 MLNKTRVGDL 130


>gi|260430264|ref|ZP_05784238.1| putative transcriptional regulator [Citreicella sp. SE45]
 gi|260418736|gb|EEX11992.1| putative transcriptional regulator [Citreicella sp. SE45]
          Length = 126

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 57/106 (53%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
             + +AE   +S   L KI+Q L +AG+V+T RG  GG  L R   +I + DVV   EE 
Sbjct: 14  STADLAEEFQLSRNHLIKIIQKLSRAGLVQTRRGGGGGATLARHPKEIRLGDVVLVLEEG 73

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
             + ECF  +  DC + G C LT+ LR A  AF + L + ++  + 
Sbjct: 74  QALVECFQPNGGDCTIDGCCRLTTRLRVAEMAFIENLNRSTVADVA 119


>gi|262067675|ref|ZP_06027287.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378399|gb|EFE85917.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 140

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  N   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSATICSTRGANCSIRLALKKIQNELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N + ++
Sbjct: 121 DDFDKINFHDLVENNTGLQ 139


>gi|118497442|ref|YP_898492.1| transcriptional regulator [Francisella tularensis subsp. novicida
           U112]
 gi|195536133|ref|ZP_03079140.1| transcriptional regulator family protein [Francisella tularensis
           subsp. novicida FTE]
 gi|208779236|ref|ZP_03246582.1| transcriptional regulator family protein [Francisella novicida FTG]
 gi|254372803|ref|ZP_04988292.1| transcriptional regulator [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254374263|ref|ZP_04989745.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|118423348|gb|ABK89738.1| transcriptional regulator [Francisella novicida U112]
 gi|151570530|gb|EDN36184.1| transcriptional regulator [Francisella novicida GA99-3549]
 gi|151571983|gb|EDN37637.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|194372610|gb|EDX27321.1| transcriptional regulator family protein [Francisella tularensis
           subsp. novicida FTE]
 gi|208745036|gb|EDZ91334.1| transcriptional regulator family protein [Francisella novicida FTG]
          Length = 136

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    +
Sbjct: 63  GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 121 LSKTSIYDIVNNKDK 135


>gi|328676938|gb|AEB27808.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida Fx1]
          Length = 136

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSRRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    +
Sbjct: 63  GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 121 LSKTSIYDIVNNKDK 135


>gi|257459683|ref|ZP_05624792.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
          gracilis RM3268]
 gi|257443108|gb|EEV18242.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
          gracilis RM3268]
          Length = 137

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+ +  YG+  ++  A  ++  P  I +IAE   +S+ +L +IL  L    +V +++G+ 
Sbjct: 4  LSTKGVYGLAAILQIAKASEVAPISIKEIAERTGVSKNYLEQILNTLRNEKLVCSIKGKN 63

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
          GG  L R A +I+  ++  A E+   +     S   
Sbjct: 64 GGYHLARDASEISFGEIFTALEKDLRMTSIQMSDPG 99


>gi|295676234|ref|YP_003604758.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
 gi|295436077|gb|ADG15247.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1002]
          Length = 149

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   + + + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QIT+LDV +A E++   A         C +  +    L+ ++ +A  A 
Sbjct: 61  GGGALLARRPEQITLLDVYRAVEDAQLFALHREEPNPACMVGRNIQSVLSGIVDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L   ++  
Sbjct: 121 EAALAARTLAD 131


>gi|311029207|ref|ZP_07707297.1| hypothetical protein Bm3-1_01416 [Bacillus sp. m3-13]
          Length = 138

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+  A   D+     +IA+    +   + KI+  L   G V T  G  GG  L R 
Sbjct: 8   AVHSLVLLAHLPDHMASSQKIADNVSTNPARIRKIMSCLRNHGFVRTKEGIGGGYILQRD 67

Query: 70  ADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFFDVLTQYS 126
            D+IT+  + ++    +     C    + +C +  +  L    V  +    F   L + S
Sbjct: 68  PDEITLGQIYRSVSGATIKPNWCSGDPEEECVVASNIQLVMDEVFEETDQYFSAYLDRIS 127

Query: 127 IECLVRN 133
           I  +++ 
Sbjct: 128 IASILKK 134


>gi|304311762|ref|YP_003811360.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
 gi|301797495|emb|CBL45715.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
          Length = 156

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + K TDY + ++   A       R+  +A+   + +  + K++  LV A +V + RG R
Sbjct: 3   RIGKLTDYALILMNCMATRPAQLWRMELLADTTRLPQPTVRKLMGQLVAANLVRSERGAR 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R  + I++ +++ A E    + EC       C  +G+C +        +    +
Sbjct: 63  GGYQLSRLPNLISMAEIIIAIEGPIAITECC-EVVPSCERLGACDMEGRWPAINDLILQL 121

Query: 122 LTQYSIECL 130
           L   ++  +
Sbjct: 122 LRVVTLSDI 130


>gi|39933740|ref|NP_946016.1| putative transcriptional regulator BadM [Rhodopseudomonas palustris
           CGA009]
 gi|6136594|sp|O07465|BADM_RHOPA RecName: Full=Putative HTH-type transcriptional regulator BadM
 gi|2190585|gb|AAC13361.1| unknown [Rhodopseudomonas palustris]
 gi|39647587|emb|CAE26107.1| putative transcriptional regulator, badM [Rhodopseudomonas
           palustris CGA009]
          Length = 156

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 3   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG R      ++T+LD++   E++   + E  +          S  L  VLR       
Sbjct: 63  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDH-----EESRALHKVLRDIDEIAM 117

Query: 120 DVLTQYSIECLVR 132
             L   SI  L++
Sbjct: 118 TTLRSVSITSLLK 130


>gi|316935429|ref|YP_004110411.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris DX-1]
 gi|315603143|gb|ADU45678.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris DX-1]
          Length = 154

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG R      ++T+LD++   E++   + E  +          S  L  VLR       
Sbjct: 61  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDEH-----EESRALHKVLRDIDEIAM 115

Query: 120 DVLTQYSIECLVR 132
             L   SI  L++
Sbjct: 116 TTLRSVSITSLLK 128


>gi|56708063|ref|YP_169959.1| hypothetical protein FTT_0970 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670534|ref|YP_667091.1| hypothetical protein FTF0970 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301877|ref|YP_001121846.1| rrf2 family transcriptional regulator [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187931697|ref|YP_001891681.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457151|ref|ZP_03665624.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370550|ref|ZP_04986555.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874866|ref|ZP_05247576.1| cysteine desulfurase activator complex subunit sufB [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604555|emb|CAG45603.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320867|emb|CAL08986.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049654|gb|ABO46725.1| transcriptional regulator, rrf2 family [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151568793|gb|EDN34447.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712606|gb|ACD30903.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840865|gb|EET19301.1| cysteine desulfurase activator complex subunit sufB [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159259|gb|ADA78650.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 136

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++IAE   ++   + K+L  L  A IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   +  IT+LD+VK  E+   + EC    K  C L G+C ++   +   +    +
Sbjct: 63  GGYTLVSDSRDITVLDIVKCVEKDVNLTECCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 121 LSKTSIYDIVNNKDK 135


>gi|323341526|ref|ZP_08081765.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
           25644]
 gi|323091047|gb|EFZ33680.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
           25644]
          Length = 186

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK  +    ++   A  N   P     I      S+ +L KI++ LV  G++ +  G
Sbjct: 9   MQLTKGFEQAACIMALLATQNRGIPLSSHVIHTRVSSSQTYLKKIMRKLVVGGLITSASG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFF------VAECFASHKIDCPLVGSCGLTSVLRK 113
             GG  L R  + IT+L +V A E          + +   S        G+  + +    
Sbjct: 69  NSGGFSLAREPEDITLLQIVSAVEGEIHTYPNNGLLDLVFSDFKPIATEGNSAINAAFDA 128

Query: 114 ALNAFFDVLTQYSIECLV 131
           A   +   L + +I  L+
Sbjct: 129 ADQLWRQALDKVTIYDLL 146


>gi|148261260|ref|YP_001235387.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
          JF-5]
 gi|146402941|gb|ABQ31468.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
          JF-5]
          Length = 97

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L++ TDY + VL+  A           IA    I E  + K+L+ L ++G+V + RG 
Sbjct: 1  MRLSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGA 59

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
           GG RL RP   I I DV+ A +    +  C       
Sbjct: 60 HGGYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGS 97


>gi|88801410|ref|ZP_01116938.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
           irgensii 23-P]
 gi|88782068|gb|EAR13245.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
           irgensii 23-P]
          Length = 137

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L +     +  P  I+ I+++  IS  FL  IL  L K GI+ + +G+ 
Sbjct: 2   LSKKTKYGIKALTFLGKQENRLPVSIATISKSENISLKFLESILLTLRKNGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +   +I +  +++  E    +  C    F     DCP   +C +  ++    + 
Sbjct: 62  GGYYLLKEPSEIPMASIMRILEGPISMVPCVSLNFYEKCDDCPDENACSVHRLMTLVRDN 121

Query: 118 FFDVLTQYSIECLV 131
              +    ++  L 
Sbjct: 122 TLQIFKNTTLADLC 135


>gi|19704228|ref|NP_603790.1| hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296328864|ref|ZP_06871375.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19714456|gb|AAL95089.1| Hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153985|gb|EFG94792.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 140

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  ++ D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDDLL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N +S++
Sbjct: 121 DDFDKINFYDLVENNASLQ 139


>gi|254460966|ref|ZP_05074382.1| transcriptional regulator, putative [Rhodobacterales bacterium
           HTCC2083]
 gi|206677555|gb|EDZ42042.1| transcriptional regulator, putative [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 110

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 34  CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
             ISE +L KI   L K G V +  GR GG+ L      I+I  V++A +++  VAECF 
Sbjct: 2   YGISENYLVKIATQLSKGGFVVSESGRGGGLTLAVLVVDISIGAVLRALKKNEPVAECFG 61

Query: 94  SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           S    C ++ +C L   L +A  AFF  L  YS+  + + +  +K + 
Sbjct: 62  S-NTSCAILPTCSLRGPLLEAQEAFFAALVGYSLADVAKAKGYLKDLI 108


>gi|192289160|ref|YP_001989765.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris TIE-1]
 gi|192282909|gb|ACE99289.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris TIE-1]
          Length = 156

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A + D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 3   MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG R      ++T+LD++   E++   + E  +          S  L  VLR       
Sbjct: 63  GGGYRFAGNPKRVTLLDIIALFEDTGLDLQEAASDDH-----EESRALHKVLRDIDEIAM 117

Query: 120 DVLTQYSIECLVR 132
             L   SI  L++
Sbjct: 118 TTLRSVSITSLLK 130


>gi|116618835|ref|YP_819206.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097682|gb|ABJ62833.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 139

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+       +QIA++   + + + +I+  L   G + +  GR
Sbjct: 1   MKYSTKLSDAIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
               +L RPAD I++LD+ +A EE     +       +C +      T      +   A 
Sbjct: 61  A-DPKLARPADTISLLDIYRAVEEDTSFLKIDTKTNQNCNVGSHIQTTLDKYYNQVQEAA 119

Query: 119 FDVLTQYSIECLVRN 133
              + +  +  +++ 
Sbjct: 120 EKEMNKIKLADIIKE 134


>gi|34581609|ref|ZP_00143089.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262994|gb|EAA26498.1| unknown [Rickettsia sibirica 246]
          Length = 128

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 13  VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            ++  A  +   P  +++++    IS  +L +I   L KA +V+ +RG +GG  L    +
Sbjct: 2   AILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYILIGNLE 61

Query: 72  QITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
           +I I D++ A  E+F +  C+      C P    C    + +       D     SI+  
Sbjct: 62  EIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHIRDYFENISIKDA 121

Query: 131 VRNRSSI 137
           + +  +I
Sbjct: 122 LNSNLNI 128


>gi|13471616|ref|NP_103182.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022358|dbj|BAB48968.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 174

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L +  +  I      A +  +     + +AE   +S  +L K L  L  A I+E+V G
Sbjct: 1   MKLGEGVEAAIHCTATLASVEGNSTMPGAALAECFGLSASYLLKHLNMLTAASILESVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113
             GG RL R A++IT+LD+V A E       C    +     + +      CG+ + + K
Sbjct: 61  PAGGYRLARAAERITLLDIVLAIEGREPAFRCGEIRRNGPVKIDASAYVKPCGINAAMLK 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
           A  A+   L +  +  +V + ++
Sbjct: 121 AERAYRAALAEVKLSDIVADYAA 143


>gi|329769741|ref|ZP_08261142.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
 gi|328838103|gb|EGF87721.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
          Length = 138

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L++ +   D       +A +   +   + KI+  L K G++E+ +G+ G +
Sbjct: 3   TKFSVALHILIFIS-ETDKIVSSELLANSVNTNSSHIRKIIALLKKGGLIESQQGKTG-M 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
            L +    IT+ DV +    +  +         +CP+  +    L  V  +A +AF++ L
Sbjct: 61  ALAKSTKDITLADVYQIVYPNKHLVNIHEGANKECPVGNNIENLLQPVFNEAQDAFYNKL 120

Query: 123 TQYSIECLVRN 133
              ++E L++ 
Sbjct: 121 ASKTLEQLIKE 131


>gi|114798072|ref|YP_758963.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
 gi|114738246|gb|ABI76371.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
          Length = 163

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + +  ++     +   A+ +      + IA    +   +L K +Q L +AGIV + RG
Sbjct: 1   MRMGEGVEWAAHACLLLSALPDGAGLPAAAIAAFHDVPPAYLAKHMQALARAGIVTSARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL R  ++I +L +  A +       C     +  C         +CG+ +    
Sbjct: 61  ASGGYRLARAPEEINLLQIADAVDGGEPAFRCTEIRQRGPCAAKAEECMKACGIAAAFWA 120

Query: 114 ALNAFFDVLTQYSIEC----LVRNRSS 136
           A   +   L    +      LVR + S
Sbjct: 121 AERIYRQHLEGVRLADIRSALVRKQDS 147


>gi|311745462|ref|ZP_07719247.1| Rrf2 family protein [Algoriphagus sp. PR1]
 gi|126578014|gb|EAZ82234.1| Rrf2 family protein [Algoriphagus sp. PR1]
          Length = 138

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T Y +  L Y   H D     I +IAE   IS  FL  IL  L KAG++ + +G+ 
Sbjct: 2   LSKKTKYALHALTYLGKHKDEKTVLIHEIAEEHGISHKFLENILLELKKAGLLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +    I +  V++  +    +  C +        +C     CG+  VL K  + 
Sbjct: 62  GGYYLIKEPKDIPLSKVIRLLDGPIALLPCVSLNYYEPCDECKNEAQCGINKVLIKVRDE 121

Query: 118 FFDVLTQYSIECLVR 132
              +L   ++E +++
Sbjct: 122 TLKILENKTLEDILK 136


>gi|83309299|ref|YP_419563.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944140|dbj|BAE49004.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 151

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 4   TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +K+  + I  ++  A H    P +  +I     I   +L + LQ LV+AGI+  VRG RG
Sbjct: 5   SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVRGPRG 64

Query: 63  GVRLCRPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           G RL R   +I++ +   VV+A E +    +      +    +G+  +  +         
Sbjct: 65  GYRLARERRRISVGEVVRVVRALETAEDPYQ-----DMPASQLGAQVIRPMWGDLTEEIM 119

Query: 120 DVLTQYSIECLV 131
             L   SI+ L 
Sbjct: 120 SRLDAISIDELC 131


>gi|110597184|ref|ZP_01385473.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341375|gb|EAT59840.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
           13031]
          Length = 140

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK TDY IR L+  A           IA    I   FL ++LQ +++  ++ +  G
Sbjct: 1   MKVLTKNTDYAIRALLALAAEKGSYLSAKAIASGQDIPYQFLRRLLQEMIRHNLIVSKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            RGG  L +  D IT+  +++  +    V+EC    +I C     C L   + +      
Sbjct: 61  ARGGFMLEKDPDAITVTQLIEIFQGKVQVSECMFRKQI-CGNRSRCVLRHEIMRIEQVVQ 119

Query: 120 DVLTQYSIECLVRN 133
               + +I  L+R+
Sbjct: 120 SEFEKVTIGKLLRD 133


>gi|115522626|ref|YP_779537.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris BisA53]
 gi|115516573|gb|ABJ04557.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris BisA53]
          Length = 153

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A H D       IAE   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1   MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG        ++T+LD++   E++    E  AS K +     S  L  VL    +    
Sbjct: 61  GGGYTFSGNPKRVTLLDIIALFEDTSPDPEQAASDKHE----ESRALHKVLHDIDDIAMT 116

Query: 121 VLTQYSIECLVR 132
            L   SI  L++
Sbjct: 117 TLRSVSITSLLK 128


>gi|254467026|ref|ZP_05080437.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
           bacterium Y4I]
 gi|206687934|gb|EDZ48416.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
           bacterium Y4I]
          Length = 142

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 13  VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+        +  I++   IS  +L ++   L ++G+VE+VRG  GG RL +PA 
Sbjct: 3   ALADIALQTQGDLVPLGDISKRQDISLPYLEQLFVKLRRSGLVESVRGPGGGYRLAKPAS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I I+DV+ A +E+       A          +  LT+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRIVDVLSAVDETVDAMHKGAGASGALSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRN 133
           ++N
Sbjct: 123 IKN 125


>gi|228990968|ref|ZP_04150931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
 gi|228997055|ref|ZP_04156686.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|229004710|ref|ZP_04162447.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228756598|gb|EEM05906.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
 gi|228762680|gb|EEM11596.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
 gi|228768748|gb|EEM17348.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
           12442]
          Length = 144

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     ++        IAE+   + + + KI+  L +A  V   RG 
Sbjct: 2   MKISSRFSIAVHILSILKNNSSSICTSEFIAESVNTNPVVIRKIMSDLKRAEFVYVNRGP 61

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +  ++IT+LDV  A    E+  +         DCP+  +    L  VL +A +
Sbjct: 62  -GGAELLKDLNEITLLDVYHAVNVVEADKLFHIHEQPNPDCPIGANIQAVLEVVLVQAQS 120

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++E L
Sbjct: 121 AMEEVLKNITMENL 134


>gi|189499610|ref|YP_001959080.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
 gi|189495051|gb|ACE03599.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
           phaeobacteroides BS1]
          Length = 136

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 14/142 (9%)

Query: 3   LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+  ++  A +      +I QI E   I + +L +I   LVK  +V++VRG +
Sbjct: 4   LSAKAHYGLAAMLDLADNFGKQRLQIRQIVEKRGIPKNYLEQIFNRLVKNALVKSVRGNK 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R    +T+  +++A E    +    + H           +        +   + 
Sbjct: 64  GGYELARSPSSLTVFSILEALEGKLEIV---SDHDTK-------AMRQTFGNLEDLVMEY 113

Query: 122 LTQYSIECLV--RNRSSIKKIF 141
               ++E L+    R S K+I+
Sbjct: 114 F-SMTLEELIVQEKRFSQKQIY 134


>gi|254476324|ref|ZP_05089710.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030567|gb|EEB71402.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 142

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 13  VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+  +     +  I++   IS  +L ++   L +AG+V++VRG  GG RL RPA 
Sbjct: 3   ALADIALQPEGHLVVLGDISKRQDISLPYLEQLFVKLRRAGLVDSVRGPGGGYRLARPAS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I ++DV+ A +E+       A          +  LT+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRVVDVLGAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRN 133
           ++N
Sbjct: 123 IKN 125


>gi|221324215|ref|ZP_03605509.1| hypothetical protein BsubsS_15007 [Bacillus subtilis subsp.
          subtilis str. SMY]
          Length = 97

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 14 LMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          ++  A  H + P  +  IA+   +SE +L +++ PL  AG+V+++RG  GG  L    D 
Sbjct: 1  MIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 60

Query: 73 ITILDVVKATEESFFVAEC 91
          IT  D+++  E    + +C
Sbjct: 61 ITAGDIIRVLEGPISLLKC 79


>gi|229542592|ref|ZP_04431652.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
 gi|229327012|gb|EEN92687.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
           36D1]
          Length = 145

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L    ++ D  +    +AE+   + + + KI+  L ++G++E   G+
Sbjct: 1   MSISSRFAVGIHILALIEMNKDGVSSSEFLAESVNTNPVVIRKIMGMLKRSGLIEVHPGK 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G  RL +    IT+LDV KA    +   +     +    CP+  +    +  +   +  
Sbjct: 61  AG-ARLAKALSDITLLDVYKAVNVVQDKALFSIHRNPNPKCPVGRNIQNTIEPIFEASQM 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL Q ++E +V++
Sbjct: 120 AMEKVLEQVTLEDVVKD 136


>gi|34762328|ref|ZP_00143331.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237741835|ref|ZP_04572316.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845171|ref|ZP_05550629.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
 gi|294785526|ref|ZP_06750814.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
 gi|27887982|gb|EAA25046.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429483|gb|EEO39695.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718730|gb|EEU32285.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
 gi|294487240|gb|EFG34602.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
          Length = 140

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIIYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSTTICSTRGADCTIRHALKKIQDELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N + ++
Sbjct: 121 DDFDKINFYDLVENSTGLQ 139


>gi|294497330|ref|YP_003561030.1| Rrf2 family transcriptional regulator [Bacillus megaterium QM
           B1551]
 gi|294347267|gb|ADE67596.1| transcriptional regulator, Rrf2 family [Bacillus megaterium QM
           B1551]
          Length = 143

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + + +P+    IA +   + + + +++  L KAG+V    G 
Sbjct: 1   MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +  ++IT+LDV +A    E   + +   +  ++CP+  +    L  +L+++ +
Sbjct: 61  GGAYLL-KDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL   +++ LV +
Sbjct: 120 AMEQVLADVTMKELVTD 136


>gi|225570988|ref|ZP_03780011.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
           15053]
 gi|225160450|gb|EEG73069.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
           15053]
          Length = 129

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY IR+L   A+ +   + +  I +   I E F +KI++ L KAGIVE  RG 
Sbjct: 1   MLLTRENDYAIRMLR--AMRDGQKHTMKDICQEEEIPEAFAYKIVRKLQKAGIVEVERGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R+ R   ++T+ DVV A +E   +  C            +C +   L +       
Sbjct: 59  AGGCRMGRSLTELTLYDVVAAVDEEPVIMPCLRKSCSRNTGGNACKVHMELAQIQRVLMR 118

Query: 121 VLTQYSIECL 130
            L   ++  +
Sbjct: 119 ELKARTLSEV 128


>gi|126641870|ref|YP_001084854.1| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
 gi|213157474|ref|YP_002319519.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|215483319|ref|YP_002325530.1| Transcriptional regulator family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239504201|ref|ZP_04663511.1| putative transcriptional regulator [Acinetobacter baumannii AB900]
 gi|213056634|gb|ACJ41536.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
           baumannii AB0057]
 gi|213986810|gb|ACJ57109.1| Transcriptional regulator family protein [Acinetobacter baumannii
           AB307-0294]
          Length = 141

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           F +   D    G C + +V+ +A  A  D L  +++  +   
Sbjct: 61  FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102


>gi|242372556|ref|ZP_04818130.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242349773|gb|EES41374.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 142

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I  +     + IA +   + + + +++  L +AG +ET +G 
Sbjct: 1   MKISSRFTVAVHILSLVHIERNQTLTSAYIAGSVNTNSVVIRRLISKLKQAGFLETHQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG++L +P   IT+LDV +A E  E   + +      I+C +  +    L  VL +A +
Sbjct: 60  SGGIQLLKPLTDITLLDVYRAVEVVEEGELFQMHEDTNINCVVGANIQSVLEIVLLRAQD 119

Query: 117 AFFDVLTQYSIECLV 131
           A   VL   +++ +V
Sbjct: 120 AMETVLANVTMDDIV 134


>gi|328543025|ref|YP_004303134.1| HTH-type transcriptional regulator rrf2-like protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412771|gb|ADZ69834.1| Putative HTH-type transcriptional regulator rrf2-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 142

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
            RI ++AE     + FL  IL  L +AG++ + RGR+GG  L +    ++I ++++  + 
Sbjct: 14  LRIEEVAELSGAPKRFLEHILLDLKRAGLIGSRRGRKGGYELIKEPRHVSIAEILRLIDG 73

Query: 85  SFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
                 C +        DC    SC + +V     +A+  ++   ++  L +    +++
Sbjct: 74  PIAPLPCLSRRAYRPCEDCKDEKSCRVRAVFGGFYSAYILMIESLTLADLQQESQPLER 132


>gi|290968839|ref|ZP_06560376.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781135|gb|EFD93726.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 144

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY IR+L   A+     + I +I++   I   F +KI + L  AG +E +RG 
Sbjct: 1   MIITRETDYAIRILR--ALEGKDVSSIREISDTEYIPLQFAYKIAKKLDHAGCIEIIRGP 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNA 117
            GG RL +    +T+ ++++ T+    V  C  +    C    +   C + + L +  + 
Sbjct: 59  HGGCRLVKDLHAVTLFEIIQITDRENMVTSCM-NEDFYCMYREVNEECIMHTSLCQVQSH 117

Query: 118 FFDVLTQYSIECLV 131
               L   +I  L+
Sbjct: 118 ITKYLKTLTIHDLI 131


>gi|295702703|ref|YP_003595778.1| Rrf2 family transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294800362|gb|ADF37428.1| transcriptional regulator, Rrf2 family [Bacillus megaterium DSM
           319]
          Length = 143

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + + +P+    IA +   + + + +++  L KAG+V    G 
Sbjct: 1   MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +  ++IT+LDV +A    E   + +   +  ++CP+  +    L  +L+++ +
Sbjct: 61  GGAYLL-KDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL   +++ LV +
Sbjct: 120 AMEQVLADVTMKELVTD 136


>gi|254303299|ref|ZP_04970657.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323491|gb|EDK88741.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 140

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  ++ D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEEDIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I       C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCTIRHALKKIQDDLL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV N +S++
Sbjct: 121 DDFDKINFYDLVENNASLQ 139


>gi|296876096|ref|ZP_06900150.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432807|gb|EFH18600.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
           ATCC 15912]
          Length = 149

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +        +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  L + AD+I++LD+ +A E    +  +     +    CP+  +  + +VL     
Sbjct: 61  -TGGAELAKAADKISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
               A    ++Q +++ +V +
Sbjct: 118 DIQIAMEKEMSQTTLKDVVED 138


>gi|223940021|ref|ZP_03631886.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
 gi|223891288|gb|EEF57784.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
          Length = 139

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +    + +L             S +A +   S  F+ +IL  L KA +V T  G+
Sbjct: 1   MAVNTQFSIAVHILAGLGYRCGGNVTSSTLAHSVNTSPSFVRRILAKLSKARLVHTTTGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS----VLRKALN 116
            G   L R    IT+L+V +A +     A    + +  CP+  SC + S    VL K   
Sbjct: 61  TGACCLARDPANITLLEVYQAVDAPKAFAIHKYNAQKPCPV--SCQIKSSLEGVLHKTQQ 118

Query: 117 AFFDVLTQYSIECLVRN 133
           +  + L + ++  ++ +
Sbjct: 119 SLENSLAKITLADVISD 135


>gi|89256550|ref|YP_513912.1| hypothetical protein FTL_1231 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314981|ref|YP_763704.1| transcriptional regulator [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502669|ref|YP_001428734.1| rrf2 family transcriptional regulator [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010975|ref|ZP_02275906.1| transcriptional regulator family protein [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254369464|ref|ZP_04985476.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953094|ref|ZP_06557715.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313700|ref|ZP_06804282.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144381|emb|CAJ79670.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129880|gb|ABI83067.1| probable transcriptional regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253272|gb|ABU61778.1| transcriptional regulator, rrf2 family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122414|gb|EDO66554.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 136

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++K  DYG+ V++  A ++  P   ++IAE+  ++   + K+L  L  A IV + RG  
Sbjct: 3   KISKLLDYGLLVVVTIAQNDSNPYSTAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGIE 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   +  IT+LD+VK  E+   +  C    K  C L G+C ++   +   +    +
Sbjct: 63  GGYTLVSDSRDITVLDIVKCVEKDVNLTGCCDLQK-KCSL-GNCMVSGYWKVLNSQLLSL 120

Query: 122 LTQYSIECLVRNRSS 136
           L++ SI  +V N+  
Sbjct: 121 LSKTSIYDIVNNKDK 135


>gi|32474577|ref|NP_867571.1| hypothetical protein RB6994 [Rhodopirellula baltica SH 1]
 gi|32445116|emb|CAD75118.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
 gi|327541268|gb|EGF27811.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
          Length = 141

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +     Y    +M  A+H  +  P R S+I     I   +L +IL+ L   G V  VR
Sbjct: 1   MVINAAVHYACLAMMDLAMHSNDGQPVRTSEITSRHDIPGPYLVQILRTLKSTGWVRAVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG  L    D IT+LD+ +A        E                L     +A    
Sbjct: 61  GSQGGYVLAVDPDSITLLDIAEAI----GCTESTDRGDQPMSDAQH-ALQRRWNEASEES 115

Query: 119 FDVLTQYSIECLVRN 133
              L +  +  +VR 
Sbjct: 116 RKRLARVRLGDVVRE 130


>gi|118445083|ref|YP_879134.1| rrf2 family protein ( transcriptional regulator) [Clostridium novyi
           NT]
 gi|118135539|gb|ABK62583.1| rrf2 family protein (putative transcriptional regulator)
           [Clostridium novyi NT]
          Length = 139

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +R ++Y              I+E   I   FL KIL+ L  AGIVE+ RG
Sbjct: 1   MKITQEVDYALRTVLYLCKLGYGEKIEAKNISETENIPIRFLLKILRKLKHAGIVESYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
             GG  L +    I+I D+++  +   ++  C    K  C L    +C + + L    N 
Sbjct: 61  VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKY-CNLNRSSTCVIHNALESVQNT 119

Query: 118 FFDVLTQYSIECLVR 132
               L   + E L+ 
Sbjct: 120 LVSNLKAINFENLLN 134


>gi|229160930|ref|ZP_04288919.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
 gi|228622498|gb|EEK79335.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
          Length = 146

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMAYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMAQL 136


>gi|159045131|ref|YP_001533925.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912891|gb|ABV94324.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 156

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     + IAE    + + + ++L  L +AG++ + +G 
Sbjct: 23  MKRNSRLSLALHTLSHMAGEPDRMRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 82

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG RL RP   IT+ DV  A +E        A     C +       ++SVL +   + 
Sbjct: 83  AGGWRLARPPQDITLADVYLALDERMVATG-NAEDVPACSIEHALHRRVSSVLEEIEESL 141

Query: 119 FDVLTQYSIECL 130
              L + SI  +
Sbjct: 142 VQRLRETSISEV 153


>gi|288573879|ref|ZP_06392236.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569620|gb|EFC91177.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 159

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +++     +  +   A+      RI ++A+A   SE  + K+ Q LV+AG+V +VRG  
Sbjct: 6   QVSEAISLALHGMGILALAGKR-MRIREMAKAVEASEAHMAKVFQRLVRAGLVGSVRGPA 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +   +I++  V +A E       C       CP    C       +    F D 
Sbjct: 65  GGFELLKKPSEISLYVVYRAIEGDLRPKSCVLGLS-RCPFRE-CMFGDFPNRVYEEFTDH 122

Query: 122 LTQYSIECLV 131
           L   S+  LV
Sbjct: 123 LKSRSLGELV 132


>gi|251788573|ref|YP_003003294.1| BadM/Rrf2 family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537194|gb|ACT05815.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
          Length = 148

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L   A+ +  P R  +IA +   S + +  +L  L KAG+ ++  G 
Sbjct: 1   MPMSTRFVVAVHILTGFAVSDGKPMRSEEIAYSVNTSAVVIRGLLARLGKAGLTKSQLGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L + A  I++LDV +  E++   +        +C +  +    +  +L +A  A 
Sbjct: 61  GGGTMLAKHAANISLLDVYETVEDTALFSLHRTPPCENCAVGSNILDAIHPILTRAREAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L + +I  +    + + K
Sbjct: 121 EQELAKTTIADVGAELARLGK 141


>gi|168185784|ref|ZP_02620419.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
 gi|169296028|gb|EDS78161.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
          Length = 139

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +R ++Y              I+E+  I   FL KIL+ L  AGIVE+ RG
Sbjct: 1   MKITQEVDYALRTVLYLCKLGYGEKIEAKNISESENIPIRFLLKILRKLKHAGIVESYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
             GG  L +    I+I D+++  +   ++  C    K  C L  S  C + + L    N 
Sbjct: 61  VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKY-CNLNRSSKCVIHNALESVQNT 119

Query: 118 FFDVLTQYSIECLVR 132
               L   + E L+ 
Sbjct: 120 LVSNLKAINFENLLN 134


>gi|294782303|ref|ZP_06747629.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
 gi|294480944|gb|EFG28719.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
          Length = 140

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV   + + 
Sbjct: 121 DDFDKINFHDLVEENTGLY 139


>gi|256026588|ref|ZP_05440422.1| hypothetical protein PrD11_01075 [Fusobacterium sp. D11]
 gi|260494648|ref|ZP_05814778.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289764592|ref|ZP_06523970.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|260197810|gb|EEW95327.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289716147|gb|EFD80159.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 141

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     S+IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDRIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L R    IT+ D V+  E+   + +  C A  +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCSI-----IFEALEKVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F   L + + + L      +K
Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135


>gi|210614867|ref|ZP_03290366.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
 gi|210150509|gb|EEA81518.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
          Length = 136

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK  DY IR++   A+ +     +S I  A  +     +KI + L K G++++ RG 
Sbjct: 4   MLFTKECDYAIRIMR--ALSDGELVSVSNICAAEQLPSAMTYKITRKLEKQGLLKSCRGT 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117
            GG  L R   +I++ D+  A +    + EC       C +      C +     +  + 
Sbjct: 62  NGGYCLNRTLSEISLYDICAAVDPDILLLECMKDG-YHCSMNNQQKPCLVHREFCRLQSM 120

Query: 118 FFDVLTQYSIECL 130
               + Q S+  L
Sbjct: 121 LLQEMRQKSLSEL 133


>gi|331092200|ref|ZP_08341030.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401972|gb|EGG81546.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 133

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK  DY IR++   A+ +     +S I     +S    +KI + L KAG+++++RG 
Sbjct: 1   MLFTKECDYAIRIMR--ALSSGEFINVSTICTMENLSSAMTYKITRKLEKAGLLKSLRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALNA 117
            GG  L R    I++ DV  + E    + EC       C +      C +     +    
Sbjct: 59  NGGYALNRSLKDISLYDVCTSIEPDILLLECM-KKDYQCSMNTQNTPCLVHGEFCRIQRI 117

Query: 118 FFDVLTQYSIECL 130
               L   ++  L
Sbjct: 118 LLQELQHKNLAEL 130


>gi|257468462|ref|ZP_05632556.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062725|ref|ZP_07927210.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688401|gb|EFS25236.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 136

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DY I++++Y + +         +I+EA  +S  F  KIL+ L K  +VE+ RG
Sbjct: 1   MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEQMSMKFALKILRRLCKVKLVESFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L + A+ I++  V++  +   F+     +      +     + S+L        
Sbjct: 61  IKGGYKLKKSANDISLRSVIEVIQGDLFINTSLKNVNSAKKVEAD-PVNSLLYSIQEEVK 119

Query: 120 DVLTQYSIECL 130
             L+  S + L
Sbjct: 120 AKLSNTSFKDL 130


>gi|194335315|ref|YP_002017109.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307792|gb|ACF42492.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 154

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  LTK TDY IR L+  A           IA    I   FL  +LQ +++  ++ +  G
Sbjct: 1   MKVLTKNTDYAIRALLALAARKGSYVSARSIATEHDIPYQFLRGLLQEMIRHDLIVSKEG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  + +  D I++  +++  +    ++EC    +I C     C L   + +      
Sbjct: 61  VQGGFMMKKDPDTISVTQLIEIFQGKVQMSECMFRKQI-CGNRARCVLRHEIMRIEQVVQ 119

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
               + +I  L+R+  +  ++
Sbjct: 120 SEFEKVTIGKLMRDLQAANQV 140


>gi|118477378|ref|YP_894529.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|118416603|gb|ABK85022.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
          Length = 164

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 22  MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 82  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 140

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 141 AMEEVLRNITMGQL 154


>gi|237740621|ref|ZP_04571102.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422638|gb|EEO37685.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 140

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +     Y ++++ Y  +H D      ++I+    I  LF  +I++ L KAG+V+  RG
Sbjct: 1   MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  L R   ++T  D+++  ++   +  C  S  I      +C +   L+K  +   
Sbjct: 61  AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120

Query: 120 DVLTQYSIECLVRNRSSIK 138
           D   + +   LV   + + 
Sbjct: 121 DDFDKINFHDLVEKNTGLY 139


>gi|305665393|ref|YP_003861680.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
 gi|88710148|gb|EAR02380.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
          Length = 143

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +  + Y ++ ++Y A+++   N+I    I+E   + + +L K+LQ L +  IV + RG 
Sbjct: 2   FSNSSKYALKAVLYLAVNSSESNKILAKNISEPINVPQAYLAKLLQELSRYNIVSSTRGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     + T++++V   +    +  C  S + +C     C L             
Sbjct: 62  NGGFYLSGQNKKTTLIEIVNVIDGDNRLNSCLLSLQ-NCDNEKPCPLHEFAAPFRTDLLK 120

Query: 121 VLTQYSIECLV 131
            L   SIE L 
Sbjct: 121 NLENSSIEDLA 131


>gi|294054230|ref|YP_003547888.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613563|gb|ADE53718.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 137

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ + +Y  RVL         D    I  +A+A  I   +L +IL  L  AG++ + R
Sbjct: 1   MKLSHKLEYACRVLAQLGRSYGQDKLAHIDTLADAEKIPANYLVQILNELRTAGLITSKR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G++GG  L R   +I +  +V+A +    + +  +S       V +     +       F
Sbjct: 61  GKQGGYALSREPSKIQLSAIVQAVDAEL-LEQHLSSDGHSGERVAT-----IWGDIAKNF 114

Query: 119 FDVLTQYSIECLV 131
            + + +Y++E ++
Sbjct: 115 EEQVGRYTLEDMI 127


>gi|87309332|ref|ZP_01091468.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM
           3645]
 gi|87287971|gb|EAQ79869.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM
           3645]
          Length = 160

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++   Y ++  +  A   +  P   S++A    + E FL ++L+ LV  GI+ + RG
Sbjct: 1   MKLSRTVAYALQATLQLAETDSSSPVPCSKLAAKGDMPERFLLQVLRNLVTHGILRSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L RPA+QI++L++++A +     +      ++D     +  L   L     A  
Sbjct: 61  VDGGYTLVRPAEQISLLEIIEAIDGPMD-SRLPIESEVDSSFQEN--LKEALANVTTAMR 117

Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
             L    I  LV   ++ + + 
Sbjct: 118 QQLADIKISKLVTKSTNGRPVI 139


>gi|319956225|ref|YP_004167488.1| transcriptional regulator, badm/rrf2 family [Nitratifractor
           salsuginis DSM 16511]
 gi|319418629|gb|ADV45739.1| transcriptional regulator, BadM/Rrf2 family [Nitratifractor
           salsuginis DSM 16511]
          Length = 134

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+ ++Y +  L      ++ P    Q+A   CI + FL KIL  L K  I+E+ RG 
Sbjct: 1   MLLTRASEYALLSLDKI-RKSEQPIGSEQLARELCIPKSFLAKILHNLAKQEILESHRGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
           +GG  +    DQI++ DV+ A E  S  V +C   +  +CP    G C ++  L      
Sbjct: 60  QGGFTIKAGMDQISVYDVILAAEGKSPAVFDC-TQYAENCPNGSIGGCAISPFLATFQGK 118

Query: 118 FFDVLTQYSIECL 130
             D L + +++ L
Sbjct: 119 IDDFLNELTLDQL 131


>gi|182413404|ref|YP_001818470.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840618|gb|ACB74870.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
           PB90-1]
          Length = 151

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
             R    + +L Y           ++IA +   + + + ++L  L KAG+V   +G  GG
Sbjct: 4   NSRFAVSLHILAYLVYRAGAAVPSAEIARSVDTNPVVIRRLLSALAKAGLVTAHKGATGG 63

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDV 121
             +    + IT+LDV +A E +        S    CP+       L  VL +A       
Sbjct: 64  FAIAAAPEAITLLDVYRAVEPAPDQGLRHFSPNPGCPVGARMERILHRVLGEAQAGMEAA 123

Query: 122 LTQYSIECL 130
           L + ++  +
Sbjct: 124 LRRVTLADM 132


>gi|237744867|ref|ZP_04575348.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432096|gb|EEO42308.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 141

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     S+IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDKIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L R    IT+ D V+  E+   + +  C A  +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCSI-----IFEALEKVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F   L + + + L      +K
Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135


>gi|295402097|ref|ZP_06812057.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109802|ref|YP_003988118.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. Y4.1MC1]
 gi|294975879|gb|EFG51497.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214903|gb|ADP73507.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
           Y4.1MC1]
          Length = 136

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  + Y A   +       IA++  +    L KIL  L K  I+ +  G +GG  L  P
Sbjct: 8   AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFTLNDP 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQY 125
            + IT+  + K T E   V +C  S++ +CP+  +  L+++L +    A   F + L   
Sbjct: 68  PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRN--LSNILIRVCHNAEQHFLNYLKGV 124

Query: 126 SIECLVRN 133
           +I+ ++  
Sbjct: 125 TIKDIIDE 132


>gi|283781762|ref|YP_003372517.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
           6068]
 gi|283440215|gb|ADB18657.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
           6068]
          Length = 152

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L++   Y +R  +  A +  + P   S++A A  + E FL +IL+ LV  GI+ + RG
Sbjct: 1   MKLSRTVAYAVRATLQLAQLEAEGPVPCSRLASAGKMPERFLLQILRNLVTHGILRSTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +PA +I++L+V++A E  +              +     L   L    +   
Sbjct: 61  VDGGYSLVKPAGEISLLEVIEAIEGPYDS---SLEMGEGLSIDSQTKLQDALNSVTSTTR 117

Query: 120 DVLTQYSIECLVRNRS 135
           + L    +  L++  +
Sbjct: 118 NQLEAIKLAQLLKAPT 133


>gi|312868528|ref|ZP_07728728.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
           F0405]
 gi|311096273|gb|EFQ54517.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
           F0405]
          Length = 147

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  +        +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  L + AD+I++LD+ +A E    +  +     +    CP+  +  + +VL     
Sbjct: 61  -TGGAELAKAADEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
               A    + Q S+E +V+ 
Sbjct: 118 DIQTAMEKEMAQISLEQVVKE 138


>gi|56416821|ref|YP_153895.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
 gi|56388053|gb|AAV86640.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
          Length = 520

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M +T R  Y +  ++             P R S IA+   +SE +L +++  L   G+V+
Sbjct: 1   MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
           + RG  GG  L  P + IT+  ++ +  +   +  C    +   P  G  C   ++    
Sbjct: 61  STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGNEREGCLPFPGVRCNSHNLWDGI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
                  L   SI  +  N 
Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140


>gi|254995024|ref|ZP_05277214.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Mississippi]
          Length = 520

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M +T R  Y +  ++             P R S IA+   +SE +L +++  L   G+V+
Sbjct: 1   MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
           + RG  GG  L  P + IT+  ++ +  +   +  C +      P  G  C   ++    
Sbjct: 61  STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
                  L   SI  +  N 
Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140


>gi|262068100|ref|ZP_06027712.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378186|gb|EFE85704.1| transcriptional regulator family protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 141

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNA 117
             GG +L +    IT+ D V+  E+   +          C +   SC  + S L +  N 
Sbjct: 61  ANGGYKLNKDPKDITLRDAVETIEDEIII------KDRSCVVGQTSCSVIFSALEEVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F + L + + + L      +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135


>gi|313905671|ref|ZP_07839032.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
 gi|313469495|gb|EFR64836.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
           cellulosolvens 6]
          Length = 146

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        +++      +A +   + + + KIL  L  AG++  +RG
Sbjct: 1   MQISSRFTVALHIFTCVDTFKDEHKVTSDFLAASINTNPVIIRKILTQLKNAGLINVIRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKAL 115
             GG+ L R    IT  DV +A E  E   +     S   +CP+  +  L     L+   
Sbjct: 61  -TGGIELTRDLKDITFYDVYQAIEPLEDGDLFRFHESPNPECPVGRNIHLLLDDKLKNIQ 119

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
            A    + +Y++  L   RS ++++ 
Sbjct: 120 EAMESEMKKYTLNDL---RSGMQELL 142


>gi|159038768|ref|YP_001538021.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917603|gb|ABV99030.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola
           CNS-205]
          Length = 169

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   T++ +      A +        +Q+A    +   +L K LQ LVKAG++    G
Sbjct: 1   MKLPISTEWLLHCAATLAQLDAGSTASAAQLARYYDLPAPYLAKQLQALVKAGVLVATTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
             GG RL +PA +IT+L +V+A   +     C         A    +C  +  C L   +
Sbjct: 61  PTGGFRLAQPASEITLLRIVEAVGGTSPPYVCREIRQQGQGALPADECQNM--CVLAEKM 118

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            +A  A+   L   S+  +V +
Sbjct: 119 TEAHEAWRRSLAGVSLADIVAS 140


>gi|239828144|ref|YP_002950768.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacillus sp. WCH70]
 gi|239808437|gb|ACS25502.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
          Length = 136

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  + Y A           IA++  +    L KIL  L K  I+ +  G +GG  L   
Sbjct: 8   AVHCVAYLAQKQSQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDS 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
            + IT+  + K T E   V +C  S++ +CP+  +    L  V   A   F + L   +I
Sbjct: 68  PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRNLSNILIRVFHNAEEHFLNYLKGVTI 126

Query: 128 ECLVRNRSS 136
           + ++   +S
Sbjct: 127 KDIIDEINS 135


>gi|269958756|ref|YP_003328543.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
 gi|269848585|gb|ACZ49229.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
          Length = 520

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M +T R  Y +  ++             P R S IA+   +SE +L +++  L   G+V+
Sbjct: 1   MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
           + RG  GG  L  P + IT+  ++ +  +   +  C +      P  G  C   ++    
Sbjct: 61  STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
                  L   SI  +  N 
Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140


>gi|213025900|ref|ZP_03340347.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 93

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 14  LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           L+Y A + +     IS++ E   +S   + KI+  L +AG V  VRG+ GG+RL +PA+ 
Sbjct: 1   LIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANT 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
           I I DVV+  E    +  C +     C +  +C 
Sbjct: 61  ICIGDVVRELE-PLSLVNCSSEF---CHITPACR 90


>gi|28377816|ref|NP_784708.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254556000|ref|YP_003062417.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300767801|ref|ZP_07077711.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308179992|ref|YP_003924120.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270649|emb|CAD63555.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254044927|gb|ACT61720.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300494786|gb|EFK29944.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045483|gb|ADN98026.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 174

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +    VL+  A    + P     + E    S  ++ KI++ LV AG+V +  G
Sbjct: 1   MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
             GGV L R  + I+I DVV A E +      +                G+  +  +  +
Sbjct: 61  NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A   + D L Q  +  L++ 
Sbjct: 121 ADQLWLDFLDQQKLATLIKE 140


>gi|229096463|ref|ZP_04227435.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
 gi|229115387|ref|ZP_04244795.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228668107|gb|EEL23541.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
 gi|228687025|gb|EEL40931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
          Length = 145

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 3   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 63  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 121

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   S+E L
Sbjct: 122 AMEEVLKNISMEQL 135


>gi|296110959|ref|YP_003621340.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832490|gb|ADG40371.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 168

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+  A+  D  P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1   MKMSNAVEQSLVVLVMLALQKDELPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCG------ 106
           + GG +L RP  QIT+LDV +A E               F + K +  +           
Sbjct: 61  KEGGFKLARPVSQITLLDVYQAIEGMGSFIHSTQLADRIFLNQKSNKRIEDVQQALAVAT 120

Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133
             + +V  +A   F + L  Y+I  L+++
Sbjct: 121 NDVLTVFNEAEQDFKNRLENYTIAKLLQH 149


>gi|228920651|ref|ZP_04083995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839016|gb|EEM84313.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 164

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 22  MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 82  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 141 AMEEVLRNITMGQL 154


>gi|70725313|ref|YP_252227.1| hypothetical protein SH0312 [Staphylococcus haemolyticus JCSC1435]
 gi|68446037|dbj|BAE03621.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 160

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+   + +++     + +++   +S+ +L KI++ LVK G+V +  G
Sbjct: 1   MKLSIGWEQAVYVLLMLNLLSEHSVMTSTALSDRLNVSDSYLKKIIKALVKEGLVNSSTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GG  L +P +QIT  DV  A E    +            + +      C ++  L   
Sbjct: 61  KNGGFSLNKPLNQITFYDVFLAIEGRDAIFSSQQLLKPFLGENEGQKAEMCVVSHALNTI 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
            +     L+  +++ + +N
Sbjct: 121 QHTLISTLSSITLDEVNQN 139


>gi|56419543|ref|YP_146861.1| hypothetical protein GK1008 [Geobacillus kaustophilus HTA426]
 gi|56379385|dbj|BAD75293.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 136

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  + Y A   +       IA++  +    L KIL  L K  I+ +  G +GG  L  P
Sbjct: 8   AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDP 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQY 125
            + IT+  + K T E   V +C  S++ +CP+  +  L+ +L +    A   F + L   
Sbjct: 68  PEHITLDKIFKITSEETLVPKCPDSNE-NCPIGRN--LSDILIRVCHNAEQHFLNYLKGV 124

Query: 126 SIECLVRNRSS 136
           +I+ ++   +S
Sbjct: 125 TIKDIIDEINS 135


>gi|299770003|ref|YP_003732029.1| putative transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700091|gb|ADI90656.1| putative transcriptional regulator [Acinetobacter sp. DR1]
          Length = 141

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVIAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           F     D    G C + +V+ +A  A  D L  +++  +   
Sbjct: 61  FNHAPPDWATGGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102


>gi|325130469|gb|EGC53229.1| rrf2 transcriptional regulator family protein [Neisseria
           meningitidis OX99.30304]
          Length = 130

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
              ++S I+E   IS  +L ++   L +AG+VE++RG  GG  L  PA +I I  ++ A 
Sbjct: 6   GAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAA 65

Query: 83  EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           E+     +C    K +C     C    +         D L   +++ ++  +++
Sbjct: 66  EDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSIIEQKNN 117


>gi|187780034|ref|ZP_02996507.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
           15579]
 gi|187773659|gb|EDU37461.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
           15579]
          Length = 141

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV++Y +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILYLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120

Query: 119 FDVLTQYSIECLVRNRSSI 137
              L   + + ++  + SI
Sbjct: 121 VSELEAVNFQEILDQKGSI 139


>gi|169350557|ref|ZP_02867495.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552]
 gi|169292877|gb|EDS75010.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552]
          Length = 146

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        +DY      +A +  ++ + + KIL  L  AG+VE  RG
Sbjct: 1   MQISSRFTIAVHIFACIDTFKDDYKITSDFLAASVNVNPVIIRKILSQLKNAGLVEVKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG  + +  +QI   D+  A E  E+  +     +    CP+  +  + ++L     +
Sbjct: 61  -SGGATIAKELEQINFYDIYSAVECIENGELFHFHENPNSQCPVGRN--IHNILDGKLVQ 117

Query: 114 ALNAFFDVLTQYSIECLVRN 133
             NA  + L + ++  ++++
Sbjct: 118 VQNALENELKKITLADVIKD 137


>gi|239616862|ref|YP_002940184.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
 gi|239505693|gb|ACR79180.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
           19.5.1]
          Length = 144

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + K   Y +R+L+  +I N       +I+ +  +   F  KIL  L KAG+V  +RGR
Sbjct: 1   MLIQKTVRYALRILVKLSIEN-RALNSKEISLSENLDHGFTLKILYYLKKAGLVRAIRGR 59

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  L +  + ITI  + +A  +    + +C       C     C +     +  N   
Sbjct: 60  KGGYALAKNPEDITITKIFEAIPDVEERLIDC----DTSCKFHKECYVKDFW-ELTNHII 114

Query: 120 DV-LTQYSIECLVRNR 134
               +  SI  ++ N 
Sbjct: 115 GYTFSNVSIANIINNN 130


>gi|110679145|ref|YP_682152.1| rrf2 family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109455261|gb|ABG31466.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 177

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   +     + IAE    + + + ++L  L KAG++ + +G 
Sbjct: 38  MKRNSRLSLALHTLGHMAGDPERVQTSADIAEHAGTNPVVVRRVLGKLRKAGLLTSEKGH 97

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG RL R   QIT+ DV  A +ES       A     C +       + SVL+    + 
Sbjct: 98  AGGWRLARAPGQITLADVYLALDESLVATG-EAEAIPACSVEHILQRKVASVLKDVEQSL 156

Query: 119 FDVLTQYSIECLVRNRS 135
            + L+  +I  +  +  
Sbjct: 157 VERLSATTIAEVRESND 173


>gi|222475186|ref|YP_002563602.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Florida]
 gi|222419323|gb|ACM49346.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Florida]
          Length = 520

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M +T R  Y +  ++             P R S IA+   +SE +L +++  L   G+V+
Sbjct: 1   MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
           + RG  GG  L  P + IT+  ++ +  +   +  C +      P  G  C   ++    
Sbjct: 61  STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120

Query: 115 LNAFFDVLTQYSIECLVRNR 134
                  L   SI  +  N 
Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140


>gi|220911591|ref|YP_002486900.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Arthrobacter chlorophenolicus A6]
 gi|219858469|gb|ACL38811.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
           chlorophenolicus A6]
          Length = 161

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    D  +R LM  A            IA++       + K +  L   G+++  RG
Sbjct: 1   MKINAFADVSLRALMVLAAAPGNQLLTTQNIADSVGTPYNHVSKAMARLRTMGLIDVERG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL       T+  +++  +     A+C A+   +CPL+  C L + L +A  AF+
Sbjct: 61  RTGGSRLSSAGRTATVGQILRELDTRTDPADCMAA-TGNCPLINECKLRAALARAREAFY 119

Query: 120 DVLTQYSIECL 130
             L    I  L
Sbjct: 120 RELDPVVIANL 130


>gi|89068825|ref|ZP_01156208.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanicola granulosus HTCC2516]
 gi|89045595|gb|EAR51658.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Oceanicola granulosus HTCC2516]
          Length = 143

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 13  VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+        + +++    IS  +L ++   L +AG+VE+VRG  GG RL RPA 
Sbjct: 3   ALADLALLPQGGLASLGEVSRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLARPAS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I + DV+ A +E+       A          +  LT+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRVADVLGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRN 133
           V N
Sbjct: 123 VGN 125


>gi|254423512|ref|ZP_05037230.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7335]
 gi|196191001|gb|EDX85965.1| rrf2 family protein (putative transcriptional regulator)
           [Synechococcus sp. PCC 7335]
          Length = 140

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 14  LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++  ++      + + QIAE   +   +L K+L  L ++ ++ +VRG +GG +L +P+ Q
Sbjct: 1   MLDLSLQPAGSLSSVRQIAERQQLPAPYLEKLLIELRRSRLINSVRGAQGGYQLAKPSSQ 60

Query: 73  ITILDVVKATEE---SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           I++  +++A  E   S       +              + +  +      +     ++E 
Sbjct: 61  ISLGQILEAVGESASSMTAMAVSSPDNSTQVQAEDWVTSMLWNRLNQKIQEAFHSITLED 120

Query: 130 LVRNRSSIKKIFNAG 144
           L  +  S +     G
Sbjct: 121 LYYDARSWQAAQGEG 135


>gi|260888343|ref|ZP_05899606.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
 gi|330838337|ref|YP_004412917.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas
          sputigena ATCC 35185]
 gi|260861879|gb|EEX76379.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
 gi|329746101|gb|AEB99457.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas
          sputigena ATCC 35185]
          Length = 148

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  YG+  + + A     + P  I  I+E   IS+++L ++   L  A +V + +
Sbjct: 1  MKISAKGRYGLAAMAFLARIGQANSPTTILTISENLGISKIYLEQVFSLLKHARLVTSSK 60

Query: 59 GRRGGVRLCRPADQITILDVVKATEESF 86
          G +GG  L R A +IT  DV+ A E   
Sbjct: 61 GSQGGYHLARAAQEITAWDVLAAIELPL 88


>gi|88658169|ref|YP_507438.1| rrf2/aminotransferase, class V family protein [Ehrlichia
           chaffeensis str. Arkansas]
 gi|88599626|gb|ABD45095.1| rrf2/aminotransferase, class V family protein [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 492

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
           S IA +  +SE +L +I+  L K G++ + +G  GG  L +  + IT+  ++++  E+  
Sbjct: 2   SHIANSQSLSEGYLEQIIVKLKKQGLINSTKGPGGGYSLNKSPNSITLNLILESIGENIK 61

Query: 88  VAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +  C  +H I C      C   ++     N     L   S+E ++ N 
Sbjct: 62  ITRC-KNHLIGCLSNNARCITHNLWDNIGNHIKKYLNSISLEDILNNN 108


>gi|30261949|ref|NP_844326.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47527212|ref|YP_018561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184791|ref|YP_028043.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49481167|ref|YP_036090.1| RRF2 family protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143498|ref|YP_083331.1| RRF2 family protein [Bacillus cereus E33L]
 gi|165873201|ref|ZP_02217814.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167633141|ref|ZP_02391467.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167638458|ref|ZP_02396735.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170686336|ref|ZP_02877557.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170706135|ref|ZP_02896597.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177650797|ref|ZP_02933694.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190566252|ref|ZP_03019170.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036748|ref|ZP_03104139.1| rrf2 family protein [Bacillus cereus W]
 gi|196041922|ref|ZP_03109210.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|218903070|ref|YP_002450904.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222095568|ref|YP_002529626.1| hypothetical protein BCQ_1908 [Bacillus cereus Q1]
 gi|227815262|ref|YP_002815271.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229029646|ref|ZP_04185722.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|229600425|ref|YP_002866321.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254684513|ref|ZP_05148373.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721270|ref|ZP_05183060.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254734816|ref|ZP_05192528.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741217|ref|ZP_05198905.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254755471|ref|ZP_05207505.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254760007|ref|ZP_05212031.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|301053482|ref|YP_003791693.1| RRF2 family protein [Bacillus anthracis CI]
 gi|30256575|gb|AAP25812.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47502360|gb|AAT31036.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178718|gb|AAT54094.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|49332723|gb|AAT63369.1| conserved hypothetical protein, possible RRF2 family protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51976967|gb|AAU18517.1| conserved hypothetical protein; possible RRF2 family protein
           [Bacillus cereus E33L]
 gi|164711075|gb|EDR16639.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167513759|gb|EDR89128.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167531953|gb|EDR94618.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170129137|gb|EDS98002.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170669412|gb|EDT20154.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172083258|gb|EDT68319.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190562387|gb|EDV16354.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195990631|gb|EDX54608.1| rrf2 family protein [Bacillus cereus W]
 gi|196027294|gb|EDX65913.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|218539939|gb|ACK92337.1| rrf2 family protein [Bacillus cereus AH820]
 gi|221239626|gb|ACM12336.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|227004632|gb|ACP14375.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|228731650|gb|EEL82556.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
 gi|229264833|gb|ACQ46470.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|300375651|gb|ADK04555.1| conserved hypothetical RRF2 family protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 143

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|304394778|ref|ZP_07376676.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130]
 gi|303293077|gb|EFL87479.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130]
          Length = 129

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    + +  +  L + A     P    Q+A     + + + +IL  L +A +  + RGR
Sbjct: 1   MKTNSQLNVALHTLGHIAASAGEPMTSEQLASCAGTNPVVVRRILGVLRRADLCVSARGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L R   +IT+ D+  A        E   +H   C + G     L   L++A  + 
Sbjct: 61  SGGWTLTRGPAEITLGDIHAAL----APPETEDAHTHTCKIAGRLDDRLDQALKRASRSM 116

Query: 119 FDVLTQYSIECLV 131
              L + ++  LV
Sbjct: 117 RQELDRTTLADLV 129


>gi|91976008|ref|YP_568667.1| hypothetical protein RPD_1529 [Rhodopseudomonas palustris BisB5]
 gi|91682464|gb|ABE38766.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris BisB5]
          Length = 154

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A H D       IA+   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1   MKLQKSTMCGLYAVLELAAHADQQISAGDIAKKYDISLNHLAKVLRTLVRARLIESVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG        ++T+LD++   E++   ++  AS   +     S  L  VL         
Sbjct: 61  GGGYTFSGNPKRVTLLDIIALFEDTAPASDLTASDDHE----ESRALHKVLGDIDEIAIT 116

Query: 121 VLTQYSIECLVR 132
            L   S+  L++
Sbjct: 117 TLRSVSLTSLLK 128


>gi|154684993|ref|YP_001420154.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
 gi|154350844|gb|ABS72923.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
          Length = 147

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R   GI +L    I+ D  +    +A +   +  F+ KI+  L KAG+V+   G 
Sbjct: 1   MSISSRFAVGIHILALIEINEDGISTSEFLAGSVNTNPAFIRKIVGMLKKAGLVKVRPGI 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +   +IT+LDV +A    +   +     +    CP+  +    +  +   A +
Sbjct: 61  AG-AELAKDLTEITLLDVYRAVNVVQDKELFSIHENPNPQCPVGRNIQSTIGPIFEIAQS 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
           A    L   +IE +V++    +K+ N
Sbjct: 120 ALEKALGHITIEDVVKDIIEKEKLTN 145


>gi|323488201|ref|ZP_08093452.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2]
 gi|323398205|gb|EGA91000.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2]
          Length = 168

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK  +  I +++  A      P    +I++   +S  ++ KI + LV  GI  +V G
Sbjct: 1   MQLTKGVEQAICIIVLLATQESSAPLASDEISKRLGVSPSYMKKITRKLVVQGIAVSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE-----CFASHKIDCPLVGSCGLTSVLRKA 114
             GGV L + A  IT+LDV++A E    +         A    +    G   L +V  + 
Sbjct: 61  NNGGVSLAKSATDITMLDVIEAMEGPIKIYPDTGLIRLAFKDGEYAKKGQEILQNVFAQG 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
                + L++ +   L++    +  +
Sbjct: 121 DRLLIEYLSKVTAADLLKEGLGMSNL 146


>gi|299068911|emb|CBJ40152.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
           CMR15]
          Length = 148

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V +  G 
Sbjct: 6   MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 64

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +A E    +A  ++     C +       L  V  +A +A 
Sbjct: 65  SGGSTLARPADRITLLDVFRAVESPVLIALPYSQPNPACEVGREITGVLERVTARAQSAM 124

Query: 119 FDVLTQYSIECLVRN 133
              L   +I  ++  
Sbjct: 125 EAELAAQTIAGMLAE 139


>gi|206970723|ref|ZP_03231675.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|217959425|ref|YP_002337975.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218235411|ref|YP_002366638.1| rrf2 family protein [Bacillus cereus B4264]
 gi|296502541|ref|YP_003664241.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|206734359|gb|EDZ51529.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|217065668|gb|ACJ79918.1| rrf2 family protein [Bacillus cereus AH187]
 gi|218163368|gb|ACK63360.1| rrf2 family protein [Bacillus cereus B4264]
 gi|296323593|gb|ADH06521.1| RRF2 family protein [Bacillus thuringiensis BMB171]
 gi|326939570|gb|AEA15466.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 143

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|256847668|ref|ZP_05553113.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
 gi|256715357|gb|EEU30333.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
          Length = 146

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +L Y  I+ D       IA +   S + + +I+  L KAG+++T  G 
Sbjct: 1   MKVSTRFSDAIHILAYLNIYQDTKLSSENIAASVMTSPVVVRRIMGALQKAGLIQTTHGS 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
                L +    I++LD+  A E +  +     +   +C + G+  +  VL    ++  N
Sbjct: 61  P-NPHLAKQPSAISLLDIYYAVEGNRQLFSVDPTTNPECIVGGN--IQKVLDQTYQEVQN 117

Query: 117 AFFDVLTQYSIECLVRN 133
           A F  L++ ++E ++ +
Sbjct: 118 AAFGRLSRITLEDIIND 134


>gi|17548747|ref|NP_522087.1| hypothetical protein RS00405 [Ralstonia solanacearum GMI1000]
 gi|17430996|emb|CAD17677.1| probable cog1959, predicted transcriptional regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 143

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLASAGE-PVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +A E    +A   +     C +       L  V  +A +A 
Sbjct: 60  SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119

Query: 119 FDVLTQYSIECLV 131
              L   +I  ++
Sbjct: 120 EAELAAQTIAGML 132


>gi|228914539|ref|ZP_04078148.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927012|ref|ZP_04090078.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228945562|ref|ZP_04107912.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229090931|ref|ZP_04222155.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228692332|gb|EEL46067.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
 gi|228814080|gb|EEM60351.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228832747|gb|EEM78318.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844858|gb|EEM89900.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 146

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|75911214|ref|YP_325510.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
 gi|75704939|gb|ABA24615.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
           ATCC 29413]
          Length = 156

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
              P  +S I+    I E +L +IL  L +AG+V++ RG RGG  L R   Q+T+L+VV 
Sbjct: 36  QKTPTTMSDISAKHPIPERYLEQILSSLRRAGVVQSQRGSRGGFVLTREPRQLTLLEVVI 95

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
             +      E  +   ++  LV  C    + ++A  A  ++L+QY+I+ L   R +
Sbjct: 96  MLDGEQKEKESPSEENLEKSLV--C---EIWQQADVAAQNILSQYTIQDLCDQREA 146


>gi|229102555|ref|ZP_04233260.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
 gi|228680877|gb|EEL35049.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
          Length = 145

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 3   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 63  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 121

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 122 AMEEVLRNITMGQL 135


>gi|65319235|ref|ZP_00392194.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
          Length = 147

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 5   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 65  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 123

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 124 AMEEVLRNITMGQL 137


>gi|255262381|ref|ZP_05341723.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
 gi|255104716|gb|EET47390.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
           R2A62]
          Length = 134

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A         + IA     + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGDPSKTRTSADIANHAGTNPVVVRRVLGKLREAGMLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG +L R  + IT+ DV  A +ES    E   +    C +       +T V+R    + 
Sbjct: 61  AGGWKLARAPETITLADVYLALDESLIATE-TDNPVSSCSVENALHHRVTGVMRDIEQSL 119

Query: 119 FDVLTQYSIECL 130
            + L + ++  +
Sbjct: 120 IERLGETTLSDV 131


>gi|229017253|ref|ZP_04174159.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229023426|ref|ZP_04179927.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228737874|gb|EEL88369.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228744043|gb|EEL94139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 143

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHKQPNPDCPIGANIQVVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|229109407|ref|ZP_04239002.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
 gi|229178348|ref|ZP_04305717.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|228605078|gb|EEK62530.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
 gi|228674033|gb|EEL29282.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
          Length = 147

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 5   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 65  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 124 AMEEVLRNITMGQL 137


>gi|30019984|ref|NP_831615.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228939070|ref|ZP_04101667.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228958230|ref|ZP_04119959.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228971948|ref|ZP_04132568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978558|ref|ZP_04138933.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|229127271|ref|ZP_04256267.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229138649|ref|ZP_04267231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|229144560|ref|ZP_04272963.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229190044|ref|ZP_04317051.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|29895529|gb|AAP08816.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228593433|gb|EEK51245.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
 gi|228638973|gb|EEK95400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228644768|gb|EEL01018.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228656104|gb|EEL11946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228781157|gb|EEM29360.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
 gi|228787765|gb|EEM35724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228801439|gb|EEM48327.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228820598|gb|EEM66626.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 146

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|312880753|ref|ZP_07740553.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
 gi|310784044|gb|EFQ24442.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
           DSM 12260]
          Length = 157

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M+LT+        ++Y A      P    +I +    +E  + K LQ L++ G++ + +G
Sbjct: 5   MNLTETLSLAFHSMVYLAERRGPRPCSAREIGDHFGATEPLVTKTLQRLLRTGLIRSCKG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L  P +++++L + +A E       C             C +  ++        
Sbjct: 65  PGGGYSLVVPPEEVSLLSIAEAVEGPLKSQGCALKGCN----RPPCPVKGLVDAVTERVS 120

Query: 120 DVLTQYSIECLVR 132
             L   ++  LV 
Sbjct: 121 QELASKTLAELVE 133


>gi|154503942|ref|ZP_02041002.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149]
 gi|153795369|gb|EDN77789.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149]
          Length = 132

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK  DY IR++   A+ +     +S+I E   +     +KI + L K+G +++ RG 
Sbjct: 1   MLFTKECDYAIRIMR--ALSSGELISVSRICEMEHLPSAMTYKITRKLEKSGFLKSCRGT 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNA 117
            GG  L     +I++ D+  A +    + EC       C +      C +     +  N 
Sbjct: 59  NGGYALNLKLAEISLYDLCAAIDPDILLLECM-KEGYPCSMNSPKNPCLVHHEFCRLQNM 117

Query: 118 FFDVLTQYSIECL 130
               + Q S+  L
Sbjct: 118 LVQEMKQKSLAEL 130


>gi|238926642|ref|ZP_04658402.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
           43531]
 gi|238885588|gb|EEQ49226.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
           43531]
          Length = 156

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +     P     ++ +     + + +IL  L +AG++   RG
Sbjct: 12  MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
           R GG  + +    IT+ D+ +A E      +     +    CP+       L   L    
Sbjct: 72  REGGAHIAKELTDITLADIFRAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131

Query: 116 NAFFDVLTQYSIECLVRN 133
           +A    + + ++  +++ 
Sbjct: 132 HAMEKEMEETTLADVIKE 149


>gi|237740772|ref|ZP_04571253.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229422789|gb|EEO37836.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 138

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L +    IT+ D V+  E+   + +  C A  +  C       +   L    N 
Sbjct: 61  ANGGYKLNKDPKDITLRDAVETIEDEIIIKDRSCVA-GQTSCS-----VIFKALESVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F + L + + + L      +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135


>gi|317489305|ref|ZP_07947819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|316911550|gb|EFV33145.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
          Length = 158

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDYG+R ++Y A           IAE   I   +L ++ Q L  AGI+E   G+
Sbjct: 1   MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG RL +      +L++++A ++    A+     K D    G+    +  V      + 
Sbjct: 60  HGGYRLAKDPADTNVLEIMEALDDD---AKQSTRAKRDARKGGAMVQEIRQVYDLIEESM 116

Query: 119 FDVLTQYSIECLVR 132
              L+  +++ L+ 
Sbjct: 117 DAYLSSLTVQMLLD 130


>gi|325677675|ref|ZP_08157327.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
 gi|324110643|gb|EGC04807.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
          Length = 145

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T   DY +R+        D       +++  C++  F  KIL+ LV AG+V++ +G 
Sbjct: 1   MYITLEADYAVRITAEL-CKADGRLDAKTLSDKTCVTLRFSLKILRKLVSAGLVKSFKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
           +GG  + +    IT+  V++A E ++  + C      DC     G+C             
Sbjct: 60  QGGYMIAKSPKDITLRMVIEAIEGTYCFSRCL-QPDADCSRGASGNCPFQDAFCDITKMV 118

Query: 119 FDVLTQYSIECL 130
            + L  Y+   L
Sbjct: 119 SEKLETYNFAQL 130


>gi|213965359|ref|ZP_03393555.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
           amycolatum SK46]
 gi|213951975|gb|EEB63361.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
           amycolatum SK46]
          Length = 157

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT  +D  +RV+   A+         +++AE+   S   + K++  LV+ G ++ V+G
Sbjct: 1   MQLTLFSDLSLRVITLMAMGEPGRKYTAAEVAESLNASRAHVSKVVSRLVELGFLDAVKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG+ L   A   ++  +++  E +  V +C      DCPL+ +C L   L  A  AFF
Sbjct: 61  RNGGIYLRDSATDKSVGKLLRTLENN-EVVDCVG---TDCPLLPTCLLRGKLAAAQEAFF 116

Query: 120 DVLTQYSIECLV 131
             L    I  L+
Sbjct: 117 AALDPVLIADLI 128


>gi|315150793|gb|EFT94809.1| Rrf2 family protein [Enterococcus faecalis TX0012]
          Length = 158

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    I +L               IA +   + + + +++  L KAG++ ++RG 
Sbjct: 1   MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116
                L +  ++I++ ++  A E    +     +   +C +  +  + SVL     K   
Sbjct: 61  N-KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117

Query: 117 AFFDVLTQYSIECLVRN 133
              + L   ++  ++  
Sbjct: 118 KMEEELKSITLADVIHE 134


>gi|300693471|ref|YP_003749444.1| transcriptional regulator, rrf2 [Ralstonia solanacearum PSI07]
 gi|299075508|emb|CBJ34801.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
           PSI07]
          Length = 143

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +A E    +A   +     C +       L  V  +A +A 
Sbjct: 60  SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119

Query: 119 FDVLTQYSIECLVRN 133
              L   +I  ++  
Sbjct: 120 EAELAAQTIAGMLAE 134


>gi|75763691|ref|ZP_00743371.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74488818|gb|EAO52354.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 164

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 22  MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 82  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 141 AMEEVLRNITMGQL 154


>gi|257789851|ref|YP_003180457.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|325832443|ref|ZP_08165396.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
 gi|257473748|gb|ACV54068.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|325486004|gb|EGC88460.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
          Length = 158

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDYG+R ++Y A           IAE   I   +L ++ Q L  AGI+E   G+
Sbjct: 1   MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG RL +      +L++++A ++    A+     K D    G+    +  V      + 
Sbjct: 60  HGGYRLAKDPADTNVLEIMEALDDD---AKQSTRAKRDARKGGAMVQEIKQVYDLIEESM 116

Query: 119 FDVLTQYSIECLVR 132
              L+  +++ L+ 
Sbjct: 117 DAYLSSLTVQMLLD 130


>gi|322508566|gb|ADX04020.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 141

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
           + KI   L KAG+V    G RGG  L R A +I+ LD+V A E    + EC         
Sbjct: 1   MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAV 60

Query: 92  FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           F +   D    G C + +V+ +A  A  D L  +++  +   
Sbjct: 61  FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102


>gi|259416991|ref|ZP_05740911.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
           TrichCH4B]
 gi|259348430|gb|EEW60207.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
           TrichCH4B]
          Length = 142

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 13  VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+   +    ++ I++   IS  +L ++   L + G+V +VRG  GG RL RPA 
Sbjct: 3   ALADIALQPSEGLVVLADISKRQDISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARPAS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I +++++ A +E+       A          +  LT+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRNR 134
           + N 
Sbjct: 123 IANE 126


>gi|313894737|ref|ZP_07828298.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976646|gb|EFR42100.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 149

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 10/151 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +  D     S+ ++ +     + + +IL  L +AG++  +RG
Sbjct: 1   MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRVMRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
           R GG  L RP  +IT+ DV  A E      +     +    CP+  S  +  VL      
Sbjct: 61  REGGAYLVRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAG 118

Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKKIFNA 143
              A    +   ++  +  + R  IK+   A
Sbjct: 119 IQRAMERTMEGMTLADIAEDARQEIKRTAQA 149


>gi|257065288|ref|YP_003144960.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256792941|gb|ACV23611.1| transcriptional regulator, BadM/Rrf2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 146

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R      +L+  A+   ++    + +A +  ++ + +  +L  L  AGIV    G
Sbjct: 1   MRFSSRLPVATHILLCIALLGHEHKTTSTFLAGSVGVNPVIVRNVLGQLKAAGIVTVEPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117
             GG  L R  ++IT+ DV++A E+   V         +CP+       L + L  A  A
Sbjct: 61  V-GGASLARAPEEITLRDVLEAVEDDAGVFRMHEHPSPECPVGRNVHAVLGAELDAAERA 119

Query: 118 FFDVLTQYSIECLVRNRSSI 137
             D L   ++  L      +
Sbjct: 120 MMDRLASATLADLADETRGL 139


>gi|229547399|ref|ZP_04436124.1| Rrf2 family transcriptional regulator protein [Enterococcus
           faecalis TX1322]
 gi|256854843|ref|ZP_05560207.1| rrf2 family protein [Enterococcus faecalis T8]
 gi|229307431|gb|EEN73418.1| Rrf2 family transcriptional regulator protein [Enterococcus
           faecalis TX1322]
 gi|256710403|gb|EEU25447.1| rrf2 family protein [Enterococcus faecalis T8]
 gi|315028301|gb|EFT40233.1| Rrf2 family protein [Enterococcus faecalis TX4000]
          Length = 141

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    I +L               IA +   + + + +++  L KAG++ ++RG 
Sbjct: 1   MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116
                L +  ++I++ ++  A E    +     +   +C +  +  + SVL     K   
Sbjct: 61  N-KNTLLKKPEEISLYEIYTAVELERDIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117

Query: 117 AFFDVLTQYSIECLVRN 133
              + L   ++  ++  
Sbjct: 118 KMEEELKSITLADVIHE 134


>gi|253581432|ref|ZP_04858657.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836502|gb|EES65037.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 140

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ +DY I++++Y + +         +I+EA  +S  F  KIL+ L K  +VE+ RG
Sbjct: 5   MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEKMSMKFALKILRRLCKVKLVESFRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L + AD I++  V++  +   F+     +      +     + S+L        
Sbjct: 65  IKGGYKLKKSADDISLRSVIEVIQGDLFINTSLKNINSAKKVETD-PVNSLLYSIQEDVK 123

Query: 120 DVLTQYSIECL 130
             L+  S + L
Sbjct: 124 RKLSNTSFKDL 134


>gi|293396060|ref|ZP_06640341.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
 gi|291421558|gb|EFE94806.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
          Length = 157

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L    +      R   IA +   +   + +IL  L  AG+  +  G+
Sbjct: 1   MSTSTRFAVAIHILTNITLFRGQAVRSEDIARSVNTNPTVVRRILGALADAGLTHSQMGQ 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L +PA +IT+ D+  A E+  +     +    +C +  +    L     +     
Sbjct: 61  GGGALLAKPASEITLRDIYHAVEDQPYFPLHRSKPNDECYIGHAIIPVLEGEFARISRHM 120

Query: 119 FDVLTQYSIECLV 131
              L Q S+  +V
Sbjct: 121 EASLAQTSLADIV 133


>gi|229011247|ref|ZP_04168440.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
 gi|228750130|gb|EEL99962.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
          Length = 143

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L ++G V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L + + +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDSHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|218896888|ref|YP_002445299.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218543446|gb|ACK95840.1| rrf2 family protein [Bacillus cereus G9842]
          Length = 143

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLGNITMGQL 133


>gi|154148775|ref|YP_001406452.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153804784|gb|ABS51791.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis
           ATCC BAA-381]
          Length = 137

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 10/122 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LTKR  Y   +++  +  +   P  I  IA+    S+ +L + +  L KAG+++ +RG  
Sbjct: 4   LTKRGVYAAIIMLEISKGDKTAPVSIKSIADTLGKSKNYLEQAINALRKAGLIKALRGPN 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +  ++IT  D+  ATE    +      ++          L        N     
Sbjct: 64  GGYFLLKKPNEITFGDIFNATEGELVMTNLDIKNEN---------LKRFFDDLNNKIKKT 114

Query: 122 LT 123
           L 
Sbjct: 115 LE 116


>gi|296115596|ref|ZP_06834223.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
 gi|295977845|gb|EFG84596.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
          Length = 106

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCP 100
           +  L +AG+V + RG  GG RL RPAD+I   D+++ T+    +  C    F     DC 
Sbjct: 1   MSDLRRAGLVTSQRGSGGGYRLARPADRIMFADIIRVTDGPISMLPCVSRNFYEQCEDCS 60

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
               C L  +  +   A  D+L   S+  
Sbjct: 61  NEEICALRKIFAEVRTAVADILDHRSLAD 89


>gi|229059615|ref|ZP_04196993.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
 gi|228719628|gb|EEL71227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
          Length = 143

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L ++G V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
           A  +VL   ++  L     S+++  NA
Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143


>gi|325676084|ref|ZP_08155766.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325553124|gb|EGD22804.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 152

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH++ R D  +R L+  A  +     +   ++ +  ++  FL  +L  L + G+V++ RG
Sbjct: 1   MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  +TI DV++  E             +         L  V         
Sbjct: 61  PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119

Query: 120 DVLTQYSIECLVR 132
            VL   +I  +  
Sbjct: 120 TVLEGVTIADVAA 132


>gi|284045053|ref|YP_003395393.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Conexibacter woesei DSM 14684]
 gi|283949274|gb|ADB52018.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
          DSM 14684]
          Length = 130

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +T ++ Y +R L          P  I+++A    I   FL ++   L +AG++++ RG +
Sbjct: 4  ITTKSPYALRALTELGRLGGSGPVPIAELARRREIPVQFLEQLFAVLRRAGVLKSQRGVK 63

Query: 62 GGVRLCRPADQITILDVVKATEESF 86
          GG    R   +IT+L++V+  + +F
Sbjct: 64 GGYSFAREPGEITVLEIVELLDGAF 88


>gi|165937166|ref|ZP_02225731.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165915029|gb|EDR33641.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar
           Orientalis str. IP275]
          Length = 118

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 46  QPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
             L K G+V +VRG  GG  L + A  I +  V+ A +ES     C    K  C     C
Sbjct: 1   SRLRKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRC 58

Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
              ++ R         L   ++  LV N+  ++
Sbjct: 59  LTHTLWRDLSERISSFLNNITLAELVNNQDILE 91


>gi|121606333|ref|YP_983662.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595302|gb|ABM38741.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
           naphthalenivorans CJ2]
          Length = 179

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 11/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ ++ + +  ++  A+  +  P  ++ I     IS  +L ++   L ++G+VE+ RG
Sbjct: 1   MRLSTKSRFAVTAMIDIALQGNAGPISLADIGMRHKISVSYLEQLFSRLRQSGLVESTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKAL 115
             GG  L R ++ I++ D++ A E         A  K +    G  G    +T  L  AL
Sbjct: 61  PGGGYSLSRSSESISVADIIGAIE-----VHPHAPGKGEKAFPGQAGSGEWMTQELWAAL 115

Query: 116 NA-FFDVLTQYSIECLVRNRSS 136
           NA   + +   S+  L   + +
Sbjct: 116 NAKMVEHMQSISLRHLASEQRA 137


>gi|312137813|ref|YP_004005149.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887152|emb|CBH46461.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 152

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH++ R D  +R L+  A  +     +   ++ +  ++  FL  +L  L + G+V++ RG
Sbjct: 1   MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG RL RPA  +TI DV++  E             +         L  V         
Sbjct: 61  PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119

Query: 120 DVLTQYSIECLVR 132
            VL   +I  +  
Sbjct: 120 TVLEGVTIADVAA 132


>gi|34763033|ref|ZP_00144008.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237742023|ref|ZP_04572504.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256845364|ref|ZP_05550822.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294785339|ref|ZP_06750627.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
 gi|27887293|gb|EAA24389.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229429671|gb|EEO39883.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256718923|gb|EEU32478.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294487053|gb|EFG34415.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
          Length = 141

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L R    IT+ D V+  E+   + +  C A  +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCIAG-QTSCSI-----IFGALEKVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F   L + + + L      ++
Sbjct: 115 FLKNLEKVNFKELTCPHVPLE 135


>gi|29377625|ref|NP_816779.1| rrf2 family protein [Enterococcus faecalis V583]
 gi|227517217|ref|ZP_03947266.1| Rrf2 family transcriptional regulator [Enterococcus faecalis
           TX0104]
 gi|227554593|ref|ZP_03984640.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229547972|ref|ZP_04436697.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|293385289|ref|ZP_06631105.1| Rrf2 family protein [Enterococcus faecalis R712]
 gi|293389698|ref|ZP_06634142.1| Rrf2 family protein [Enterococcus faecalis S613]
 gi|294779157|ref|ZP_06744567.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
           PC1.1]
 gi|300861490|ref|ZP_07107574.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270509|ref|ZP_07551807.1| Rrf2 family protein [Enterococcus faecalis TX4248]
 gi|307273674|ref|ZP_07554902.1| Rrf2 family protein [Enterococcus faecalis TX0855]
 gi|307276598|ref|ZP_07557716.1| Rrf2 family protein [Enterococcus faecalis TX2134]
 gi|307284797|ref|ZP_07564953.1| Rrf2 family protein [Enterococcus faecalis TX0860]
 gi|307288388|ref|ZP_07568380.1| Rrf2 family protein [Enterococcus faecalis TX0109]
 gi|307292194|ref|ZP_07572058.1| Rrf2 family protein [Enterococcus faecalis TX0411]
 gi|312902009|ref|ZP_07761271.1| Rrf2 family protein [Enterococcus faecalis TX0470]
 gi|312905479|ref|ZP_07764593.1| Rrf2 family protein [Enterococcus faecalis TX0635]
 gi|312906640|ref|ZP_07765640.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512]
 gi|312910899|ref|ZP_07769734.1| Rrf2 family protein (putative transcriptional regulator)
           [Enterococcus faecalis DAPTO 516]
 gi|312953278|ref|ZP_07772122.1| Rrf2 family protein [Enterococcus faecalis TX0102]
 gi|29345093|gb|AAO82849.1| rrf2 family protein [Enterococcus faecalis V583]
 gi|227075314|gb|EEI13277.1| Rrf2 family transcriptional regulator [Enterococcus faecalis
           TX0104]
 gi|227176270|gb|EEI57242.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22]
 gi|229306848|gb|EEN72844.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC
           29200]
 gi|291077489|gb|EFE14853.1| Rrf2 family protein [Enterococcus faecalis R712]
 gi|291080945|gb|EFE17908.1| Rrf2 family protein [Enterococcus faecalis S613]
 gi|294453790|gb|EFG22182.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
           PC1.1]
 gi|295114481|emb|CBL33118.1| transcriptional regulator, BadM/Rrf2 family [Enterococcus sp. 7L76]
 gi|300848951|gb|EFK76704.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD
           Ef11]
 gi|306496700|gb|EFM66253.1| Rrf2 family protein [Enterococcus faecalis TX0411]
 gi|306500688|gb|EFM70013.1| Rrf2 family protein [Enterococcus faecalis TX0109]
 gi|306503056|gb|EFM72313.1| Rrf2 family protein [Enterococcus faecalis TX0860]
 gi|306506708|gb|EFM75860.1| Rrf2 family protein [Enterococcus faecalis TX2134]
 gi|306509687|gb|EFM78729.1| Rrf2 family protein [Enterococcus faecalis TX0855]
 gi|306513090|gb|EFM81724.1| Rrf2 family protein [Enterococcus faecalis TX4248]
 gi|310627288|gb|EFQ10571.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512]
 gi|310628783|gb|EFQ12066.1| Rrf2 family protein [Enterococcus faecalis TX0102]
 gi|310631208|gb|EFQ14491.1| Rrf2 family protein [Enterococcus faecalis TX0635]
 gi|311288767|gb|EFQ67323.1| Rrf2 family protein (putative transcriptional regulator)
           [Enterococcus faecalis DAPTO 516]
 gi|311290945|gb|EFQ69501.1| Rrf2 family protein [Enterococcus faecalis TX0470]
 gi|315026525|gb|EFT38457.1| Rrf2 family protein [Enterococcus faecalis TX2137]
 gi|315031868|gb|EFT43800.1| Rrf2 family protein [Enterococcus faecalis TX0017]
 gi|315034782|gb|EFT46714.1| Rrf2 family protein [Enterococcus faecalis TX0027]
 gi|315144200|gb|EFT88216.1| Rrf2 family protein [Enterococcus faecalis TX2141]
 gi|315146528|gb|EFT90544.1| Rrf2 family protein [Enterococcus faecalis TX4244]
 gi|315152847|gb|EFT96863.1| Rrf2 family protein [Enterococcus faecalis TX0031]
 gi|315154594|gb|EFT98610.1| Rrf2 family protein [Enterococcus faecalis TX0043]
 gi|315159542|gb|EFU03559.1| Rrf2 family protein [Enterococcus faecalis TX0312]
 gi|315161290|gb|EFU05307.1| Rrf2 family protein [Enterococcus faecalis TX0645]
 gi|315164374|gb|EFU08391.1| Rrf2 family protein [Enterococcus faecalis TX1302]
 gi|315167047|gb|EFU11064.1| Rrf2 family protein [Enterococcus faecalis TX1341]
 gi|315171134|gb|EFU15151.1| Rrf2 family protein [Enterococcus faecalis TX1342]
 gi|315172883|gb|EFU16900.1| Rrf2 family protein [Enterococcus faecalis TX1346]
 gi|315573196|gb|EFU85387.1| Rrf2 family protein [Enterococcus faecalis TX0309B]
 gi|315577066|gb|EFU89257.1| Rrf2 family protein [Enterococcus faecalis TX0630]
 gi|315581302|gb|EFU93493.1| Rrf2 family protein [Enterococcus faecalis TX0309A]
 gi|323479104|gb|ADX78543.1| transcriptional regulator family protein [Enterococcus faecalis 62]
 gi|327536296|gb|AEA95130.1| Rrf2 family transcriptional regulator [Enterococcus faecalis OG1RF]
 gi|329577825|gb|EGG59248.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
           TX1467]
          Length = 141

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    I +L               IA +   + + + +++  L KAG++ ++RG 
Sbjct: 1   MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116
                L +  ++I++ ++  A E    +     +   +C +  +  + SVL     K   
Sbjct: 61  N-KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQ 117

Query: 117 AFFDVLTQYSIECLVRN 133
              + L   ++  ++  
Sbjct: 118 KMEEELKSITLADVIHE 134


>gi|332878892|ref|ZP_08446607.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683243|gb|EGJ56125.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 148

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y A ++    RI   ++A+A  I   FL KILQ LV+  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAANSSESKRIGVKEVADALHIPLPFLAKILQALVRKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     +  ++ VV+   E+    +C  S +  C     C L + ++   + F  
Sbjct: 62  GGGFWLTDDEKEQPLMRVVEQIGEADKFIKCAMSLRP-CSDEKPCPLHTSVQPFRDNFRK 120

Query: 121 VLTQYSIECLVRN 133
            LT+ SI      
Sbjct: 121 ELTENSIADFAEK 133


>gi|90422537|ref|YP_530907.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris BisB18]
 gi|90104551|gb|ABD86588.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris BisB18]
          Length = 154

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T  G+  ++  A H D       IAE   IS   L K+L+ LV+A ++E+VRG 
Sbjct: 1   MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVRARLIESVRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      ++T+LD++   E++    E  AS   +     S  L  +LR        
Sbjct: 61  GGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAASDDHE----ESRALHKMLRDIDGIAMT 116

Query: 121 VLTQYSIECLVR 132
            L   SI  L++
Sbjct: 117 TLRSISITSLLK 128


>gi|320332910|ref|YP_004169621.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754199|gb|ADV65956.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
           maricopensis DSM 21211]
          Length = 138

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL   ++H D+      IA +   + + +  I+  L +AG++ T RG  G   L R 
Sbjct: 8   AVHVLALISMHPDHARTSEAIAGSVGTNPVVVRNIIGLLRRAGLLRTQRGVAG-AVLTRT 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
            D +T+LDV +A      +          CP+       L  V   A  A  + L Q ++
Sbjct: 67  PDAVTLLDVYRAVNPPEHLFRLHEQPNPQCPVGSHIQDTLEVVFGTAQRALEERLGQVTL 126

Query: 128 ECLVRN 133
             ++ +
Sbjct: 127 VDVMAD 132


>gi|241890090|ref|ZP_04777388.1| transcriptional regulator [Gemella haemolysans ATCC 10379]
 gi|241863712|gb|EER68096.1| transcriptional regulator [Gemella haemolysans ATCC 10379]
          Length = 138

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L+Y +   D       +A++   +   + KIL  L K  ++E+ +G+ G +
Sbjct: 3   TKFSVALHILIYIS-ETDKVVSSEILAKSVNTNSSHIRKILVVLKKGELIESQQGKTG-I 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
            L +    IT+ ++ +      ++         +CP+  +    L  V  +A  AF+  L
Sbjct: 61  TLAKEPKDITLSEIYQIIYPDKYLVNIHEGANKECPVGLNIENLLQPVFNEAQEAFYKKL 120

Query: 123 TQYSIECLVRN 133
              ++E L++ 
Sbjct: 121 EGKTLEKLIKE 131


>gi|84686886|ref|ZP_01014770.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665083|gb|EAQ11563.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 143

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 13  VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+  +     ++ ++E   IS  +L ++   L +A +VE+VRG  GG  L RP+ 
Sbjct: 3   ALAELALQPEGTRMSLTDLSERQKISLPYLEQLFVKLRRAELVESVRGPGGGYMLARPSS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I + +++ A +E+       A          +  +T+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRVAEILAAVDETVSAMHTGAGASGGKSGTRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRNR 134
           V N 
Sbjct: 123 VHNE 126


>gi|294053610|ref|YP_003547268.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293612943|gb|ADE53098.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 150

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            I  + Y A      +      +IAE   + +  + K+L  L +AG+V+  RG  GG  L
Sbjct: 11  AISAMSYLAKVYDGGETKISSKEIAEERQLPQTLVAKLLVTLSQAGLVDGARGPNGGYWL 70

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            +    I + D+V+  E+    A C       C     C L   L +        L + S
Sbjct: 71  AKAPKDIVLYDIVRLFEKGGSGAMCPFGPDW-CGNGEPCPLHDQLVELDGNLMSFLERTS 129

Query: 127 IE 128
           + 
Sbjct: 130 LA 131


>gi|262366531|gb|ACY63088.1| hypothetical protein YPD8_2413 [Yersinia pestis D182038]
          Length = 149

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
               VK G+V +VRG  GG  L + A  I +  V+ A +ES     C    K  C     
Sbjct: 31  FHAYVKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNR 88

Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
           C   ++ R         L   ++  LV N+  ++
Sbjct: 89  CLTHTLWRDLSERISSFLNNITLAELVNNQDILE 122


>gi|83312490|ref|YP_422754.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82947331|dbj|BAE52195.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 136

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T   +  ++  A   D     ++IAE   IS   L K+L+ L + G+VE VRG 
Sbjct: 1   MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      + T+LD+++  E +            D    G  GL  VL +  +    
Sbjct: 61  GGGYRFSGNRRRTTLLDIIQLFE-TIDPIRHGEREDGDDTAEGK-GLCQVLMEIEDTARA 118

Query: 121 VLTQYSIECLVR 132
                +++ +++
Sbjct: 119 TFASITLDTMIK 130


>gi|46201310|ref|ZP_00055264.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 144

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 9   YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + I  ++  A H    P +  +I     I   +L + LQ +V+AGI+  VRG RGG RL 
Sbjct: 3   FAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQMVRAGILVGVRGPRGGYRLA 62

Query: 68  RPADQITILD---VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           R   +I++ +   VV+A E +    +   + ++     G   +  +           L  
Sbjct: 63  RERRRISVGEVVRVVRALETAEDPYQDMPASEL-----GKQVIRPMWGDLTEEIMARLDA 117

Query: 125 YSIECLV 131
            SI+ L 
Sbjct: 118 ISIDELC 124


>gi|228900538|ref|ZP_04064761.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
 gi|228968842|ref|ZP_04129804.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790905|gb|EEM38544.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859089|gb|EEN03526.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           4222]
          Length = 146

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|218680758|ref|ZP_03528655.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           894]
          Length = 122

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G
Sbjct: 1   MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
             GG RL R + +I  LD+V+A E       C        C   G      C +  ++ +
Sbjct: 61  PSGGYRLARSSSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120

Query: 114 A 114
           A
Sbjct: 121 A 121


>gi|19704428|ref|NP_603990.1| hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714688|gb|AAL95289.1| Hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 142

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + +     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L +    IT+ D V+  E+   + +  C    +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVVG-QTSCSI-----IFEALEKVENN 114

Query: 118 FFDVLTQYSIECL 130
           F + L + + + L
Sbjct: 115 FLNNLEKVNFQEL 127


>gi|296328218|ref|ZP_06870749.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154730|gb|EFG95516.1| transcriptional regulator superfamily protein [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 142

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + +     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L +    IT+ D V+  E+   + +  C    +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNKEPKDITLRDAVETIEDEIIIKDKSCVV-GQTSCSI-----IFEALEKVENN 114

Query: 118 FFDVLTQYSIECL 130
           F + L + + + L
Sbjct: 115 FLNNLEKVNFQEL 127


>gi|228907665|ref|ZP_04071522.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
 gi|228852157|gb|EEM96954.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
           200]
          Length = 146

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGHL 136


>gi|228952322|ref|ZP_04114410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807318|gb|EEM53849.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 147

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 5   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 65  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 123

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 124 AMEEVLRNITMGQL 137


>gi|229155529|ref|ZP_04283637.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
 gi|228627847|gb|EEK84566.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
          Length = 146

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKLMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|220925187|ref|YP_002500489.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           nodulans ORS 2060]
 gi|219949794|gb|ACL60186.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           nodulans ORS 2060]
          Length = 167

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 10  GIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            +  ++  A+H    P     +A    +    L  +LQ LV+ G+++ +RG  GG  L R
Sbjct: 32  AVAAVIDIALHARPQPVSAKALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELAR 91

Query: 69  PADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
              +I+  DV +A    E            + D P V +  +  +L  A  AF   L   
Sbjct: 92  ERRRISAGDVARAVLSLEGP----------EPDKPAVAAALVDPLLAAAGQAFLATLDAV 141

Query: 126 SIECLVRNRSSIK 138
           ++E L R   + +
Sbjct: 142 TVEDLCRQAEAAR 154


>gi|317501323|ref|ZP_07959526.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088357|ref|ZP_08337276.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897287|gb|EFV19355.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408601|gb|EGG88067.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 144

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +       +D       +A +   + + + KILQ L  AG++E  RG 
Sbjct: 1   MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
            GGV + RP +QIT LDV KA E      +     +    CP+  +  +  VL     + 
Sbjct: 60  TGGVTITRPLEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  + L++ ++  + ++
Sbjct: 118 QKAMEEKLSEMTLADVKKD 136


>gi|317056183|ref|YP_004104650.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315448452|gb|ADU22016.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 143

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M++T   DY +R+        +       I++  C++  F  KIL+ LV AG+V++ +G 
Sbjct: 1   MYITLEADYAVRITAAL-CRAEGKLDAKTISDQTCVTLRFSLKILRKLVSAGLVQSFKGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
           +GG  +      IT+  V++A E  +  + C      +C    S  C             
Sbjct: 60  QGGYMIAMEPKDITLRMVIEAIEGKYCFSRCL-QEDAECSRGASGKCPFQDAFCDITKMV 118

Query: 119 FDVLTQYSIECL 130
            + L  ++   L
Sbjct: 119 SEKLDSHNFAEL 130


>gi|326693155|ref|ZP_08230160.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773]
          Length = 165

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+   +  D+ P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1   MKMSSAVEQSLVVLVMLELQKDHAPVKSYLLSDRLQVSESYLKKTMRKLVVAGIVDAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCGLTSV-- 110
           + GG +L RP   IT+LDV +A E               F + K D P+     + +V  
Sbjct: 61  KEGGFKLARPIANITLLDVYQAIEGDGSFIHSTQLADRIFLNQKSDKPVEDVQEVLNVTI 120

Query: 111 ------LRKALNAFFDVLTQYSIECLVRN 133
                   +A   F   L  Y+I  L+++
Sbjct: 121 TDVLTIFSEAEQDFKKRLKSYTIANLLQH 149


>gi|149179559|ref|ZP_01858095.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
 gi|148841602|gb|EDL56029.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
          Length = 141

 Score = 99.6 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+K  +Y +R +   A     P     +AE   +   +L ++LQ L  +GIV +  G +G
Sbjct: 2   LSKTHEYALRAVACLAGQPGKPASADFLAERTKVPRRYLTRVLQDLAASGIVSSKSGPKG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L   + ++TILD+V A      +  C    K    L   C L + L +         
Sbjct: 62  GYELIAESGELTILDIVNAIAPLERIKACPLGLKSHTSL---CPLHAELDRVYAETEAAF 118

Query: 123 TQYSIECLVRNRSSIKKIFN 142
            + +I+ L+ + S+I  + +
Sbjct: 119 ARVTIKQLLESTSTIIPLCD 138


>gi|300117525|ref|ZP_07055312.1| rrf2 family protein [Bacillus cereus SJ1]
 gi|298725060|gb|EFI65715.1| rrf2 family protein [Bacillus cereus SJ1]
          Length = 143

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   +++ L
Sbjct: 120 AMEEVLRNITMDQL 133


>gi|330684769|gb|EGG96463.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis
           VCU121]
          Length = 142

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    I ++       IA +   + + + +I+  L +A +V+  RG 
Sbjct: 1   MKISSRFTVAVHILSLIQIESNQELSSKYIAGSVNTNPVVIRRIIGYLKRAQLVDMYRG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG+ L +P   IT+LDV  A +  E   + +      ++C +  +    L  +L +A +
Sbjct: 60  NGGLYLLKPLSDITLLDVYHAVDVVEEGQLFQIHEDTNVNCVVGANIQGVLEIILMQAQD 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A   VL + ++  +V  
Sbjct: 120 AMEGVLAKVTMNDIVNQ 136


>gi|315225080|ref|ZP_07866897.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944763|gb|EFS96795.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 145

 Score = 99.3 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AIH+   +RI    +AEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q  ++ VV+   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120

Query: 121 VLTQYSIECLVRN 133
            LT+ SI    + 
Sbjct: 121 ELTENSIASFAQK 133


>gi|42781070|ref|NP_978317.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|42736991|gb|AAS40925.1| rrf2 family protein [Bacillus cereus ATCC 10987]
          Length = 143

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 ALEEVLRNITMGQL 133


>gi|227431453|ref|ZP_03913502.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352819|gb|EEJ42996.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 150

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+  A+  D  P +   ++E   +SE +L K ++ LV A +++ +  
Sbjct: 1   MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLGVSESYLKKTMRKLVVANLIKAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           + GG +L R  + IT+LDV +A E       S  +A+     K    + G+  + S++ +
Sbjct: 61  KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTA-VVEGTKEVLSIVYE 119

Query: 114 ALNAFFDVLTQYSIECLV 131
           A   F   L + SI  L+
Sbjct: 120 AEKDFKKRLKRTSIADLL 137


>gi|144901312|emb|CAM78176.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 140

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +       + +  P     IA +   + + + ++L  L KAG+V ++RG  GG  L + 
Sbjct: 10  AVHTCTLLGMSDGQPLTSDWIAGSVNTNPVVIRRLLSSLAKAGLVTSIRGSNGGSVLAQL 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
            + IT+LD+ +A +E    A         CP+       L  V+ +A  A   VL+   +
Sbjct: 70  PEAITLLDIQRAVDEDTEPALHNQPPNQKCPVGRGIQPVLRRVIDRAEAAREAVLSTTLL 129

Query: 128 ECLV 131
             ++
Sbjct: 130 AEVI 133


>gi|254442216|ref|ZP_05055692.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
 gi|198256524|gb|EDY80832.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
          Length = 139

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            I  L Y A    +    +    IA    + +  + K+L  L +AG+V    G +GG  L
Sbjct: 11  AIMALCYLAEGFDNGVTRHTSRDIATNRNLPQPIVAKLLVLLSQAGLVLGTPGPKGGYWL 70

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            R    IT+ D+V   E       C       C     C L   L    +   D L + +
Sbjct: 71  ARDPQDITLYDIVSHFERDGERISC-PKGIGKCDESNPCALHQKLIDLDHQLVDFLHENT 129

Query: 127 IECLVR 132
           +E  V 
Sbjct: 130 LEAFVE 135


>gi|23014795|ref|ZP_00054594.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 136

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T   +  ++  A   D     ++IAE   IS   L K+L+ L + G+VE VRG 
Sbjct: 1   MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      + T+LD+++  E +            D    G  GL  VL +  +    
Sbjct: 61  GGGYRFSGNRRRTTLLDIIQLFE-TIDPIRNGEREDGDDTAEGK-GLCQVLMEIEDTARA 118

Query: 121 VLTQYSIECLVR 132
                +++ +++
Sbjct: 119 TFASITLDTMIK 130


>gi|196047005|ref|ZP_03114224.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225863879|ref|YP_002749257.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|196022109|gb|EDX60797.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225789070|gb|ACO29287.1| rrf2 family protein [Bacillus cereus 03BB102]
          Length = 143

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +    IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|251799818|ref|YP_003014549.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247547444|gb|ACT04463.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 141

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y A   +       IA+        + K++  L K+G V+T  G  GG RL   
Sbjct: 8   AVHSLVYLAYLPERMASSEMIADNVGTHSARVRKVMSGLRKSGFVDTREGAGGGYRLTID 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            D +T+ DV +   + SF  + C     +DC +  +    +  +   A        +  +
Sbjct: 68  PDVVTLGDVYRVMAQGSFIPSWCSGDPGMDCVVGSNMNQVMFGIFCTAEKQLEGYFSGIT 127

Query: 127 IECLVRN 133
           I  +++ 
Sbjct: 128 ISDVLKQ 134


>gi|328955220|ref|YP_004372553.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
 gi|328455544|gb|AEB06738.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
           glomerans PW2]
          Length = 164

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +  + +R L+  A H       + QIA+   ISE +L  IL  LV+ G++   RG
Sbjct: 1   MLVSTKGRHALRALVDLAEHQAAGYIPLKQIADRQSISEKYLESILSSLVQHGLLLGRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           R GG RL R A + T++ V+  TE S     C       C     C   ++     +   
Sbjct: 61  RGGGYRLARNARRCTVMSVLTLTEGSISAVPCLEGRSTGCHRASRCRTLAMWEGLDSLVR 120

Query: 120 DVLTQYSIECLVRNRS 135
             L   +I  L+R+  
Sbjct: 121 TYLEGVTIADLMRSPK 136


>gi|324998176|ref|ZP_08119288.1| transcriptional regulator [Pseudonocardia sp. P1]
          Length = 258

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ R D+ +  L      +        ++ A  +    L  ++  L +AG+V + RG  G
Sbjct: 138 VSARLDHALAALAELVDADGDTVTCDAMSRARGVPLNSLVNVMLQLRRAGLVTSRRGCEG 197

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL R AD+IT+ DVV+ATE +  V        +            +         + L
Sbjct: 198 GYRLARRADEITVADVVRATEGAVAVLRGTGPASV------------LWADLERTVAEFL 245

Query: 123 TQYSIECL 130
           T  ++  L
Sbjct: 246 TSRTLTDL 253


>gi|83644269|ref|YP_432704.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632312|gb|ABC28279.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 159

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L +  DYG+ +            ++ Q+A+   +    + KI++ LV  G+V + RG +
Sbjct: 3   RLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLVDGGVVHSERGVK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L   A  I+I  +++A E    + +C A  ++ C ++ +C + S          ++
Sbjct: 63  GGYCLSDAAYNISIARILRAVEGGVALTDCCAEERV-CDVMHACTVHSNWSVINQTVSEI 121

Query: 122 LTQYSIECLVRN 133
             + ++  + R 
Sbjct: 122 FERLTLRDMSRR 133


>gi|229069492|ref|ZP_04202781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|228713631|gb|EEL65517.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
          Length = 147

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 5   MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 65  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 124 AMEEVLRNITMGQL 137


>gi|256819570|ref|YP_003140849.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
           ochracea DSM 7271]
 gi|256581153|gb|ACU92288.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
           ochracea DSM 7271]
          Length = 145

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AIH+   +RI    +AEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     Q  ++ VV+   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120

Query: 121 VLTQYSIECLVRN 133
            L++ SI    + 
Sbjct: 121 ELSENSIASFAQK 133


>gi|210617663|ref|ZP_03291694.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
 gi|210149210|gb|EEA80219.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
          Length = 147

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +         ++      +A +  ++ + + KIL  L  AG+V+  RG
Sbjct: 1   MQISSRFTIAVHIFACIDTFKEEFKLTSEFLAASINVNPVIIRKILSQLKAAGLVKVQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG  + +P D+IT  D+ +A E  E   +     +    CP+  +  + +VL     +
Sbjct: 61  -SGGASIAKPLDEITFFDIYQAVECVEHGELFHFHENPNQKCPVGRN--IHNVLDGKLIQ 117

Query: 114 ALNAFFDVLTQYSIECLVRN 133
             +A  + L + ++E ++++
Sbjct: 118 IQDALENELGKITLEDVMKD 137


>gi|291010047|ref|ZP_06568020.1| transcriptional regulator Rrf2 family protein, putative
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 147

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ R+   I  L   A   +     ++IA++   + + + +IL  L  A +V +  GR G
Sbjct: 4   LSSRSAVAIHALAMLAHRREGSLTSAEIADSLGSNPVLVRRILGRLRNAELVWSTEGRGG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G  L R    IT+ D   A EE    +         C +  + G  L    + A  A  +
Sbjct: 64  GWSLARAPRDITLYDAYAAVEEGQIFSRHTHPPSGVCEVGRNIGELLDIEFQSAERALEE 123

Query: 121 VLTQYSIECLVRN 133
            L + +I  L++ 
Sbjct: 124 QLGRTTIAGLLQQ 136


>gi|229184155|ref|ZP_04311364.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228599270|gb|EEK56881.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
          Length = 146

 Score = 99.3 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +    IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|229079125|ref|ZP_04211674.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
 gi|228704142|gb|EEL56579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
          Length = 146

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|300697092|ref|YP_003747753.1| Rrf2 family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299073816|emb|CBJ53337.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
           CFBP2957]
          Length = 143

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +  E    +A   +     C +       L  V  +A +A 
Sbjct: 60  SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119

Query: 119 FDVLTQYSIECLVRN 133
              L   +I  ++  
Sbjct: 120 EAELAAQTIAGMLAE 134


>gi|83952084|ref|ZP_00960816.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius nubinhibens ISM]
 gi|83837090|gb|EAP76387.1| iron-sulfur cluster assembly transcription factor IscR, putative
           [Roseovarius nubinhibens ISM]
          Length = 143

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 13  VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+   +    +  ++    IS  +L ++   L +A +V +VRG  GG RL RP  
Sbjct: 3   ALADIAMQEANGLVTLGDVSRRQDISLPYLEQLFVKLRRAELVASVRGPGGGYRLARPPS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
           +I + +++ A +E+       A          +  +T+ L + L+A  +  L Q  +  +
Sbjct: 63  EIRVAEILAAVDETVDALHKGAGASGAASGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRNR 134
           + N 
Sbjct: 123 IENE 126


>gi|312112835|ref|YP_004010431.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311217964|gb|ADP69332.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 149

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   T + I  ++  A           IAE   IS   L K+L+ L + GIV+  RG 
Sbjct: 1   MRLQVATRHAIFSVLELAAQPHRQMSAVDIAEKYAISPNHLAKVLRTLGREGIVDASRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      ++T+ D++   E        F +            L  V+ +  +    
Sbjct: 61  GGGYRFVGNPKRLTLFDIIAIFEPIGPTTGGFEAGDDTSEGQA---LRLVMNEIEDTARA 117

Query: 121 VLTQYSIECLVR 132
            L+  +I+ +++
Sbjct: 118 TLSSITIDTMLK 129


>gi|218662716|ref|ZP_03518646.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli
           IE4771]
          Length = 128

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  I  +   + +        + +AE   +S  +L K LQ L  AGI++TV G
Sbjct: 1   MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRK 113
            RGG RL +  ++I++LD++ A E       C     +   P+        C +++ + +
Sbjct: 61  PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120

Query: 114 ALNAFFDV 121
           A   +   
Sbjct: 121 AERVYRAE 128


>gi|331082894|ref|ZP_08332015.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400035|gb|EGG79688.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 311

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           + +I+  L K   VE V+G+ GG RL +      I D+++ TE       C   +   C 
Sbjct: 211 IERIMPVLSKNHYVEGVQGKGGGYRLTKEPKDYRIGDILRLTEGQLVPVACLECNAETCK 270

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
               C    + ++  +   +     ++  L++
Sbjct: 271 RANICKTLPMWKEFHHMVNNYFDNITLSDLMK 302


>gi|271970217|ref|YP_003344413.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270513392|gb|ACZ91670.1| putative transcriptional regulator [Streptosporangium roseum DSM
           43021]
          Length = 157

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L   T++ +      A +        +Q+A+   +   +L K L+ LV+AG++    G
Sbjct: 1   MKLPVSTEWVLHCATTLAQLDPGASASAAQLAQYYDLPAAYLTKQLKSLVRAGLLAATTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
            RGG RL RPA +IT+L +V+A + +    EC         A    +C    +C L   +
Sbjct: 61  PRGGFRLARPASEITLLQIVEAVDGTSPPYECREIRQQGRGALAPEECRR--TCILAEKM 118

Query: 112 RKALNAFFDVLTQYSIECLVR 132
             A  A+   L + ++  ++ 
Sbjct: 119 ADAHEAWRRTLAEVTLAGILA 139


>gi|324325977|gb|ADY21237.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 143

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGHL 133


>gi|148379309|ref|YP_001253850.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932711|ref|YP_001383685.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936293|ref|YP_001387233.1| putative transcriptional regulator [Clostridium botulinum A str.
           Hall]
 gi|153940905|ref|YP_001390690.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|168179993|ref|ZP_02614657.1| putative transcriptional regulator [Clostridium botulinum NCTC
           2916]
 gi|148288793|emb|CAL82877.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928755|gb|ABS34255.1| putative transcriptional regulator [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932207|gb|ABS37706.1| putative transcriptional regulator [Clostridium botulinum A str.
           Hall]
 gi|152936801|gb|ABS42299.1| putative transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|182669084|gb|EDT81060.1| putative transcriptional regulator [Clostridium botulinum NCTC
           2916]
 gi|295318764|gb|ADF99141.1| putative transcriptional regulator [Clostridium botulinum F str.
           230613]
 gi|322805649|emb|CBZ03214.1| rrf2 family transcriptional regulator [Clostridium botulinum H04402
           065]
          Length = 137

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + + ++  
Sbjct: 121 VSELEAVNFQEILDK 135


>gi|322383829|ref|ZP_08057576.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151645|gb|EFX44718.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 132

 Score = 98.9 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L   A++++       +A +   + + + +I+  L KAG+V+ VR   GG  L +  
Sbjct: 1   MHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQ-VRSGTGGAYLLKSL 59

Query: 71  DQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
           D+IT+LD+ KA +  E   + +       +CP+  +    L  VL +A  A   VL   +
Sbjct: 60  DEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQEAMEQVLKDIT 119

Query: 127 IECLV 131
           ++ LV
Sbjct: 120 MDELV 124


>gi|313205515|ref|YP_004044692.1| transcriptional regulator, badm/rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|312444831|gb|ADQ81186.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|315023387|gb|EFT36397.1| rrf2 family protein (putative transcriptional regulator)
           [Riemerella anatipestifer RA-YM]
 gi|325335053|gb|ADZ11327.1| Predicted transcriptional regulator [Riemerella anatipestifer
           RA-GD]
          Length = 144

 Score = 98.5 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR  +  A    N+    + +I+ +      F+ KILQ L KA I+E+VRG 
Sbjct: 2   FSKACEYAIRSAICIAQKRLNNQRVNVKEISASIDAPVAFIAKILQQLCKANIIESVRGH 61

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  +      +I I D++ A + S    +C    K +C  V  C + +  R+      
Sbjct: 62  QGGFSIDIEQLKEIKIYDIIVAIDGSGLFTKCGLGLK-ECSSVNPCPVHNDFREIKAKLE 120

Query: 120 DVLTQYSIECLV 131
           ++   YS+  L 
Sbjct: 121 NITKSYSLYDLA 132


>gi|329922262|ref|ZP_08277964.1| transcriptional regulator [Paenibacillus sp. HGF5]
 gi|328942299|gb|EGG38569.1| transcriptional regulator [Paenibacillus sp. HGF5]
          Length = 147

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE   G 
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLT--SVLRKA 114
            G  +L +P   IT+LD+  A     E S  +     +    CP+          V   A
Sbjct: 61  AG-AKLAKPPSGITLLDIYHAVHVVQEGS--LFGIHENSDTKCPVGKHIQTAIVPVFSAA 117

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  D L + ++E +VR 
Sbjct: 118 QKAMEDTLHEVNLEQIVRE 136


>gi|152981839|ref|YP_001353596.1| transcriptional regulator [Janthinobacterium sp. Marseille]
 gi|151281916|gb|ABR90326.1| transcriptional regulator [Janthinobacterium sp. Marseille]
          Length = 148

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    +    +  LM+ A H   P     +A     + + + + +  L   G+V + RG 
Sbjct: 1   MKKNSKLSASLHALMHMA-HQQEPLTSETLAVCMHTNPVVVRRTMAGLRDNGLVTSGRGH 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG  L RP  +IT+ DV  A  E   +          C L    S  L     +A + F
Sbjct: 60  GGGWALARPVAEITLRDVYTALNEPVPLQ--LEEDAPVCQLEHAVSTALNHAYAEAESLF 117

Query: 119 FDVLTQYSIECL 130
              L   ++  L
Sbjct: 118 ARSLANITLADL 129


>gi|313895665|ref|ZP_07829221.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320528904|ref|ZP_08029996.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|312975791|gb|EFR41250.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|320138534|gb|EFW30424.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 147

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ +  YGI  +++ A + D   P  I  I+E   IS+++L ++   L ++ +V +++
Sbjct: 1   MKISAKGRYGIAAMVFLARNYDASSPITIISISEHLGISKIYLEQVFSLLKRSRLVNSIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G +GG +L R   +I   DV+ + E    + E           +       V  +   + 
Sbjct: 61  GSQGGYQLSRHPREINAYDVLSSIE--ISLIEKAGPATDKMDALNRMLSRCVFDELDRSI 118

Query: 119 FDVLTQYSIECLV 131
            + L   S+E L+
Sbjct: 119 LETLRGISLEDLL 131


>gi|213962009|ref|ZP_03390274.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
 gi|213955362|gb|EEB66679.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
          Length = 145

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y A+H     R+    IAEA  I   FL KILQ L +  ++ + +G 
Sbjct: 2   LSNSSKYAINAVIYLALHASPTKRLAPKDIAEALHIPTSFLAKILQTLARKKVISSNKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L        +++VVK   E+     C    K +C     C L + ++   + F  
Sbjct: 62  GGGFWLTDEEKAAPLMNVVKQIGEAEKFTSCAMGFK-ECSSEKPCPLHTSVQPFRDNFMR 120

Query: 121 VLTQYSIECLVRN 133
            LT  SI    + 
Sbjct: 121 ELTNNSIASFAQK 133


>gi|315612720|ref|ZP_07887631.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
           49296]
 gi|315314830|gb|EFU62871.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
           49296]
          Length = 145

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +++  A+ + D       +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIATHMMIIIALQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++LDV +A E   +S  +     +   +CP+  +  + +VL     
Sbjct: 61  -TGGTEIIKDLKDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
               A  + L Q S+  +V +  +
Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141


>gi|315649061|ref|ZP_07902154.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315275496|gb|EFU38851.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 148

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE   G 
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGISTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
            G  +L +   +IT+LD+  A    +   +     +    CP+          V   A  
Sbjct: 61  AG-AKLAKHPAEITLLDIYHAVHVVQEDSLFSIHENSDTKCPVGKHIQTAIVPVFSAAQK 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A  + L + S+E ++RN
Sbjct: 120 AMENTLHEVSLEEIIRN 136


>gi|206977492|ref|ZP_03238387.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|206744342|gb|EDZ55754.1| rrf2 family protein [Bacillus cereus H3081.97]
          Length = 143

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|260881170|ref|ZP_05403779.2| Rrf2 family protein [Mitsuokella multacida DSM 20544]
 gi|260849700|gb|EEX69707.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
          Length = 159

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +     A  + +      +A +  ++ + + K +  L KAG+++  RG
Sbjct: 8   MQISSRFTIAVHIFACIEAFGDQHKLTSDFLAGSVNVNPVIIRKTMSQLQKAGLIKVARG 67

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             GG+++ RP D+IT+ DV +A E  +   +     +    CP+  +    L   L  A 
Sbjct: 68  -TGGIKITRPLDEITLFDVFQAVEALDHKQLFHFHDNPNPSCPVGRNIHNILDGHLHDAQ 126

Query: 116 NAFFDVLTQYSIECLVRN 133
            A    L + ++  + + 
Sbjct: 127 RALEQELAKTTLADIQKE 144


>gi|167748622|ref|ZP_02420749.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
 gi|167651936|gb|EDR96065.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
          Length = 145

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  + +L+  A    + P +   ++E   +S+ +L KI++ LV AG+V++  G
Sbjct: 1   MKIKGSLEQAVCILLVIAHTKGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           ++GG  L R    I++LDV +A E       +  + +     +          + SV  +
Sbjct: 61  KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A+   L+Q++++ +V  
Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140


>gi|116619016|ref|YP_819387.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097863|gb|ABJ63014.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 150

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+  A+  D  P +   ++E   +SE +L K ++ LV A +++ +  
Sbjct: 1   MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLEVSESYLKKTMRKLVVANLIKAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLR---KA 114
           + GG +L R  + IT+LDV +A E           A          + G   VL    +A
Sbjct: 61  KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTAVAEGTKEVLSIVYEA 120

Query: 115 LNAFFDVLTQYSIECLV 131
              F   L + SI  L+
Sbjct: 121 EKDFKKRLKRTSIADLL 137


>gi|150021434|ref|YP_001306788.1| BadM/Rrf2 family transcriptional regulator [Thermosipho
           melanesiensis BI429]
 gi|149793955|gb|ABR31403.1| transcriptional regulator, BadM/Rrf2 family [Thermosipho
           melanesiensis BI429]
          Length = 148

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +++Y +R+L+  ++     +    I++    I   F  KIL  LV +GI+ + RG
Sbjct: 1   MAVTMKSEYALRLLLLLSLDEKLVSTRELISKCKADIPYEFAQKILSRLVSSGILSSSRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG +L +   +ITI D+V A ++   V  CF            C +  + +  +  F 
Sbjct: 61  KFGGYKLTKKPSEITIYDIVSAVDDISTVITCFVEPGKMKLEPEICTVNEIWQIVMEKFS 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             L   ++E L   +S +KK
Sbjct: 121 KSLMSVTLEDL--KKSYLKK 138


>gi|300777499|ref|ZP_07087357.1| possible transcription regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300503009|gb|EFK34149.1| possible transcription regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 143

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR L++ A    +     I  I+      E F+ KILQ L + G V++ +G 
Sbjct: 2   FSKTCEYAIRALIFIAQKSKDGSRIGIKDISSGIDSPEYFIAKILQDLSRKGFVQSAKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     + ++ D+V+  +     + C    K +C     C + +  +        
Sbjct: 62  NGGFYMDDANLEQSVADIVREIDGDKLFSGCGLGLK-ECSEDHPCPIHNDFKHIRQEIKT 120

Query: 121 VLTQYSIECLVRN 133
           +L +  I+  V N
Sbjct: 121 MLEESRIQLFVEN 133


>gi|73541761|ref|YP_296281.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
           JMP134]
 gi|72119174|gb|AAZ61437.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
           JMP134]
          Length = 144

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A  ++ P   S IA +   +   + +++  L +AG+V ++ G 
Sbjct: 1   MTTSSRFAVAVHILTLLASASE-PLPSSLIAGSVGTNPALIRRLIGQLAEAGLVTSIMGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA++IT+LDV +A E +  +    ++    C +       L  V  +A +A 
Sbjct: 60  TGGSTLSRPAERITLLDVFRAVETTALITLHQSAPNPACMVGREITGALRQVADRAQSAM 119

Query: 119 FDVLTQYSIECLVRN 133
            + L + +I  ++ +
Sbjct: 120 DNALAEITIASMLAD 134


>gi|293364946|ref|ZP_06611663.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
           35037]
 gi|307703197|ref|ZP_07640143.1| transcriptional regulator family protein [Streptococcus oralis ATCC
           35037]
 gi|291316396|gb|EFE56832.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
           35037]
 gi|307623272|gb|EFO02263.1| transcriptional regulator family protein [Streptococcus oralis ATCC
           35037]
          Length = 145

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +++  A+ + D       +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIATHMMIIIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +   +I++LDV +A E   +S  +     +   +CP+  +  +  VL     
Sbjct: 61  -TGGTEIIKDLQEISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
               A  + L Q S+  +V +  +
Sbjct: 118 DVQAAMENQLHQTSLAQVVADAQN 141


>gi|325473526|gb|EGC76719.1| hypothetical protein HMPREF9353_02145 [Treponema denticola F0402]
          Length = 139

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    +  L+       D       I+ +  ++ + + KIL  L KAG+VET  G
Sbjct: 1   MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
             GG  L + AD+IT+LDV  A    EE   +          CP+       L + L  A
Sbjct: 61  V-GGSHLAQAADKITLLDVYNAINEGEEERDIFNFHPKPNSKCPVGSKIHLVLDTKLDDA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  D L + +I  L ++
Sbjct: 120 QKAMKDSLNKTTIADLSKD 138


>gi|228985043|ref|ZP_04145211.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774731|gb|EEM23129.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 147

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 5   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 64

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 65  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 124 AMEEVLRNITMGQL 137


>gi|86131704|ref|ZP_01050301.1| transcriptional regulator [Dokdonia donghaensis MED134]
 gi|85817526|gb|EAQ38700.1| transcriptional regulator [Dokdonia donghaensis MED134]
          Length = 135

 Score = 98.5 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+++T YG++ L + A   +     I +IA++  IS+ FL  IL  + KAG + + +G+ 
Sbjct: 2   LSRKTKYGLKALTFLAKKPENTTVLIQEIADSENISKKFLESILLSMRKAGYLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + I I  V++  E    +  C    F  H  DCP    C L  ++ +  + 
Sbjct: 62  GGYYLIKSPEDIKISSVIRTLEGPIALLPCVSLNFYEHCDDCPKEEECSLHILMIEVRDQ 121

Query: 118 FFDVLTQYSIECLV 131
              VL   S+  L+
Sbjct: 122 TLKVLENKSLIDLI 135


>gi|229196161|ref|ZP_04322911.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
 gi|228587319|gb|EEK45387.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
          Length = 146

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + K++  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 123 AMEEVLRNITMGQL 136


>gi|144900811|emb|CAM77675.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 136

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K T   +  ++  A          +IA+   IS   L K+L+ L +AG++E VRG 
Sbjct: 1   MKLQKATRCALFAILELAGDPGRQMSAHEIADKYGISTNHLAKVLRSLGRAGLLEAVRGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      + T+LDV++  E    +A          P  G+  L  VL +  +    
Sbjct: 61  GGGYRFSGSVKRTTLLDVIQLFETIDPLARGEREDGDGTPGGGA--LCEVLTEIEDIARA 118

Query: 121 VLTQYSIECLVR 132
                S+E +++
Sbjct: 119 TFASISLETMLK 130


>gi|320531098|ref|ZP_08032127.1| Rrf2 family protein [Selenomonas artemidis F0399]
 gi|320136680|gb|EFW28633.1| Rrf2 family protein [Selenomonas artemidis F0399]
          Length = 160

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 10/151 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +  D     S+ ++ +     + + +IL  L +AG++  +RG
Sbjct: 12  MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRIMRG 71

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113
           R GG  L RP  +IT+ DV  A E      +     +    CP+  S  +  V    L  
Sbjct: 72  REGGAYLMRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAD 129

Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKKIFNA 143
              A    +   ++  +  + R  IK+   A
Sbjct: 130 IQRAMERAMEGMTLANIAEDARQEIKRTAQA 160


>gi|296124045|ref|YP_003631823.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
           3776]
 gi|296016385|gb|ADG69624.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
           DSM 3776]
          Length = 147

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++K  +Y +R +   A   +      ++A    +   +L  +LQ L +AGIV++  G  G
Sbjct: 2   ISKTAEYALRTVACLASAREGIVLADELATRTQVPRRYLNTVLQDLGRAGIVKSKSGPGG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L     +++ILDV+ A      + +C         L   C L + L KA        
Sbjct: 62  GHSLLVDPKELSILDVINAVSPLERIRQCPLGLPSHTEL---CPLHAELDKAYAHTEKAF 118

Query: 123 TQYSIECLVRNRSSIKKIFN 142
              ++  ++ +   +  + +
Sbjct: 119 AGVTLGQVLASTKGVIPLCD 138


>gi|126734658|ref|ZP_01750404.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
 gi|126715213|gb|EBA12078.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
          Length = 125

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A+  D P     IA+    +   + KI+  L +AGI  +  G +GG  L R  +QIT+L
Sbjct: 1   MAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRAGITTSQPGAKGGTHLARSPEQITLL 60

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQYSIECLVR 132
           DV +A +     A         CP+     +  VL +    A  A    L   SI  +  
Sbjct: 61  DVYRAVDTQEIFANPNCPPDASCPIGS--RIGPVLDEIKANATQAMEAELAAVSIAGIAG 118

Query: 133 NRSSI 137
               +
Sbjct: 119 KLKPL 123


>gi|83749686|ref|ZP_00946666.1| Rrf2 family protein [Ralstonia solanacearum UW551]
 gi|207739012|ref|YP_002257405.1| cog1959, predicted transcriptional regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|83723648|gb|EAP70846.1| Rrf2 family protein [Ralstonia solanacearum UW551]
 gi|206592383|emb|CAQ59289.1| cog1959, predicted transcriptional regulator protein [Ralstonia
           solanacearum IPO1609]
          Length = 143

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +  E    +A   +     C +       L  V  +A +A 
Sbjct: 60  SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119

Query: 119 FDVLTQYSIECLVRN 133
              L   +I  ++  
Sbjct: 120 ETELAAQTIAGMLAE 134


>gi|254303065|ref|ZP_04970423.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323257|gb|EDK88507.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 142

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + +     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDRNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
             GG +L +    IT+ D V+  E+   + +  C    +  C +     +   L K  N 
Sbjct: 61  ANGGYKLNKEPKDITLRDAVETIEDEIIIKDRSCVV-GQTSCSI-----IFKALEKVENN 114

Query: 118 FFDVLTQYSIECL 130
           F   L + + + L
Sbjct: 115 FLSNLEKVNFQEL 127


>gi|207724271|ref|YP_002254668.1| cog1959, predicted transcriptional regulator protein [Ralstonia
           solanacearum MolK2]
 gi|206589487|emb|CAQ36448.1| cog1959, predicted transcriptional regulator protein [Ralstonia
           solanacearum MolK2]
          Length = 143

 Score = 98.1 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPAD+IT+LDV +  E    +A   +     C +       L  V  +A +A 
Sbjct: 60  SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACDVGREITGVLERVTARAQSAM 119

Query: 119 FDVLTQYSIECLVRN 133
              L   +I  ++  
Sbjct: 120 ETELAAQTIAGMLAE 134


>gi|313682502|ref|YP_004060240.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155362|gb|ADR34040.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 141

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 11  IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           IR  ++ +        RI +I+E+  +   FL K LQ LV AGI+ ++RG  GGV L +P
Sbjct: 10  IRAAVWLSTKEIGKFYRIQEISESLELPYHFLSKSLQKLVHAGILVSLRGASGGVSLSKP 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A +IT+L ++ A + S F   C      DC     C L +          ++ +   +  
Sbjct: 70  ASEITLLSIIDAVDGSVFFDTCVLGIG-DCEAEKPCALHAQWDVWRQEMLEMYSAMRLSE 128

Query: 130 LVRN 133
           +  +
Sbjct: 129 ITDD 132


>gi|37520366|ref|NP_923743.1| hypothetical protein glr0797 [Gloeobacter violaceus PCC 7421]
 gi|35211359|dbj|BAC88738.1| glr0797 [Gloeobacter violaceus PCC 7421]
          Length = 140

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L+ +++Y +  ++          P +I +IA+   I + +L ++L  L + G+V++ R
Sbjct: 1   MELSAKSEYALLAMLQLALGHGKGEPMQIKEIAQCQSIPDRYLEQLLADLRRHGLVKSQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G RGG  L R    I +L++V+  E          +      L  S  +     ++  A 
Sbjct: 61  GARGGYLLAREPFAIHLLEIVQCIEGQD------ETETPPNTLEAS-IVREAWDESRRAA 113

Query: 119 FDVLTQYSIECLVR 132
             VL  ++++ L  
Sbjct: 114 EQVLKGHTLQKLCE 127


>gi|304407788|ref|ZP_07389439.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343271|gb|EFM09114.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 142

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y A   +       +A+        + K++  L K+G V T  G  GG RL   
Sbjct: 8   AVHSLVYLAYVPERMASSEALADNVGTHPARIRKVMSVLRKSGYVATREGAGGGYRLTAE 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQ 124
            +++++ D+ +   + S   + C    ++DC +  +  +  V+      A          
Sbjct: 68  PNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSN--MKQVMFGIFCTAEKRLETHFNA 125

Query: 125 YSIECLV 131
            +I  ++
Sbjct: 126 ITIRDVL 132


>gi|317470881|ref|ZP_07930261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|316901625|gb|EFV23559.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 145

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  + +L+  A    + P +   ++E   +S+ +L KI++ LV AG+V++  G
Sbjct: 1   MKIKGSLEQAVCILLVIAHTRGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
           ++GG  L R    I++LDV +A E       +  + +     +          + SV  +
Sbjct: 61  KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A+   L+Q++++ +V  
Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140


>gi|188585903|ref|YP_001917448.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350590|gb|ACB84860.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 144

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R+ + +   +Y A++ +     +  +++A  ISE +L ++  PL KA I+ + RG
Sbjct: 1   MKVSTRSKWALACSLYYAVNYSKEVIPLKTVSKALGISEKYLEQLSIPLKKADILASTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG +L    ++IT+  V+ + E      E  +    +  L+     +    +      
Sbjct: 61  TQGGYKLKYHPEKITVYQVLSSIE-PIHFGEDASDQAGEKELLSV--TSEFWDELSQDLI 117

Query: 120 DVLTQYSIECL 130
             L Q +++ L
Sbjct: 118 KQLNQITLDDL 128


>gi|194014249|ref|ZP_03052866.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
 gi|194013275|gb|EDW22840.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
          Length = 137

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L + A         + IAE+   +   + K++  L +AG++E  RG  
Sbjct: 3   QISNRYPIAVHILSFIAGVQKE-CTGNFIAESVNSNPAIVRKMMAMLKRAGLIEIRRGVG 61

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
           G   L RPA++IT+LDV +A +  E   +   F    I CP+  +    L S L++A +A
Sbjct: 62  GAY-LKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQSA 119

Query: 118 FFDVLTQYSIECLVRNRS 135
             + L Q +I+ L+    
Sbjct: 120 LENHLKQVTIQQLLTEAE 137


>gi|47568316|ref|ZP_00239018.1| rrf2 family protein [Bacillus cereus G9241]
 gi|47555009|gb|EAL13358.1| rrf2 family protein [Bacillus cereus G9241]
          Length = 143

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     ++        +AE+   + + + K++  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNSSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  +VL   ++  L
Sbjct: 120 AMEEVLRNITMGQL 133


>gi|226948610|ref|YP_002803701.1| putative transcriptional regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843148|gb|ACO85814.1| putative transcriptional regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 137

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+ IV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSRIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K    F
Sbjct: 61  VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKF 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + + ++  
Sbjct: 121 VSELEAVNFQEILDK 135


>gi|261408945|ref|YP_003245186.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261285408|gb|ACX67379.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 150

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+++ R    I +L    ++    +    IAE+   + + + +I+  L KAG+VE   G 
Sbjct: 1   MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLT--SVLRKA 114
            G  +L +P   IT+LD+  A     E S  +     +    CP+          V   A
Sbjct: 61  AG-AKLAKPPSGITLLDIYHAVHVVQEGS--LFGIHENSDAKCPVGKHIQTAIVPVFSAA 117

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  D L + ++E +VR 
Sbjct: 118 QKAMEDTLHEVNLEQIVRK 136


>gi|300312800|ref|YP_003776892.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300075585|gb|ADJ64984.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 147

 Score = 98.1 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L++     D P    +IA     + + + +    L +AGIV + +G 
Sbjct: 1   MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
            GG  L RP ++I++L V +A      V          C   +  +  L  V+ +A    
Sbjct: 61  GGGWSLARPMEEISLLQVQQAL-GERLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  L ++
Sbjct: 120 DQRLAGITLAALAQD 134


>gi|228933254|ref|ZP_04096110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826415|gb|EEM72192.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 146

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG 
Sbjct: 4   MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 64  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122

Query: 117 AFFDVLTQYSIECL 130
           A  +VL    +  L
Sbjct: 123 AMEEVLRNIKMGQL 136


>gi|291523912|emb|CBK89499.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           DSM 17629]
 gi|291528627|emb|CBK94213.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
           M104/1]
          Length = 141

 Score = 97.7 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +       +D       +A +   + + + KILQ L  AG++E  RG 
Sbjct: 1   MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIIRKILQQLKAAGLIEVARG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
            GGV + RP +QIT LDV KA E      +     +    CP+  +  +  VL     + 
Sbjct: 60  TGGVTITRPLEQITFLDVYKAVECAPDEQLFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117

Query: 115 LNAFFDVLTQYSIECL 130
             A  + L++ ++  +
Sbjct: 118 QRAMEEKLSEMTLADV 133


>gi|226357828|ref|YP_002787568.1| transcriptional regulator,Rrf2 family [Deinococcus deserti VCD115]
 gi|226320071|gb|ACO48064.1| putative transcriptional regulator,Rrf2 family [Deinococcus deserti
           VCD115]
          Length = 138

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL    ++ D       IA +   + + +  ++  L +AG+++T +G  G   L R 
Sbjct: 8   AVHVLALINMYPDSARTSEDIAASIGTNPVVVRNVIGHLRRAGLLDTRQGVAG-AHLTRA 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
              IT+LDV +A      V +        CP+       LT V  +A  A    L   ++
Sbjct: 67  PRDITLLDVYRAVNAPASVFKLHEQPNPRCPVGSRIQGSLTQVFGEAQGALEAHLASLTL 126

Query: 128 ECLVRN 133
           E +  +
Sbjct: 127 EDVTGD 132


>gi|168184147|ref|ZP_02618811.1| putative transcriptional regulator [Clostridium botulinum Bf]
 gi|182672686|gb|EDT84647.1| putative transcriptional regulator [Clostridium botulinum Bf]
          Length = 137

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + + ++  
Sbjct: 121 VSELEAVNFQEILDE 135


>gi|331266849|ref|YP_004326479.1| Rrf2 family protein; transcriptional regulator,putative
           [Streptococcus oralis Uo5]
 gi|326683521|emb|CBZ01139.1| Rrf2 family protein; transcriptional regulator,putative
           [Streptococcus oralis Uo5]
          Length = 145

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +++  A+ + +       +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIATHMMIIIAMQDTESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++LDV +A E   +S  +     +   +CP+  +  +  VL     
Sbjct: 61  -TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
               A  + L Q S+  +V +  +
Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141


>gi|268679955|ref|YP_003304386.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
          deleyianum DSM 6946]
 gi|268617986|gb|ACZ12351.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
          deleyianum DSM 6946]
          Length = 137

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 3  LTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L+ +  YG+  +  ++ A  +  P +I +I+    I + +L ++L  L +AG+V +VRG 
Sbjct: 4  LSTKGMYGLSAMYQLFLA-KSSKPLQIKEISTRAEIPQNYLEQLLILLRQAGLVNSVRGA 62

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAE 90
           GG  L + A+ I I D++ A E +  V +
Sbjct: 63 YGGYLLAKAAENILIKDILIALEGNLLVID 92


>gi|52081678|ref|YP_080469.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
 gi|52787064|ref|YP_092893.1| hypothetical protein BLi03369 [Bacillus licheniformis ATCC 14580]
 gi|319647593|ref|ZP_08001812.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
 gi|52004889|gb|AAU24831.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
 gi|52349566|gb|AAU42200.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
 gi|317390319|gb|EFV71127.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
          Length = 144

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L    + +D+     QIA++   + + + +I + L KAG++E  RG 
Sbjct: 1   MKISSRFTIAVHMLSLMHVRSDH-LTSEQIADSVNTNPVIIRQISRLLKKAGLIEVKRG- 58

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
            GG  L R A  I++ DV KA E      +     +   DC +  +    L  VL KA  
Sbjct: 59  TGGAHLLRDAGAISLYDVYKAVEVVGEGELFHTHENPNPDCWVGANIHQVLELVLLKAQT 118

Query: 117 AFFDVLTQYSIECL 130
           A  ++L + SI+ L
Sbjct: 119 AMENILKEMSIKEL 132


>gi|300172524|ref|YP_003771689.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
 gi|299886902|emb|CBL90870.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
          Length = 168

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+  A+  D  P +   +++   +SE +L K ++ LV AGIV+ +  
Sbjct: 1   MKMSHAVEQSLVVLVMLALQKDDLPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-------SFFVAECFASHKIDCPLVGSCG------ 106
           + GG RL RP  +IT+LDV +A E        +      F S + +  +           
Sbjct: 61  KEGGFRLARPISKITLLDVYQAIEGIGSFIHSTQLADRIFLSQQSNKRIEDVQQALEVAT 120

Query: 107 --LTSVLRKALNAFFDVLTQYSIECLV 131
             + +V  +A   F + L  Y+I  L+
Sbjct: 121 NDVLTVFNEAEQDFKNRLQNYTIAKLL 147


>gi|254459171|ref|ZP_05072593.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
 gi|207084064|gb|EDZ61354.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
           bacterium GD 1]
          Length = 137

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  YG+  ++  A  ++    +I  IA    I + +L +IL  L K+G+VE+VRG  
Sbjct: 4   ISTKGAYGLTAIIILAKEDNAKLLQIKDIAAKGDIPQNYLEQILVLLKKSGLVESVRGAN 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R  + I++ +V+ + E      +  ++  +         L +          ++
Sbjct: 64  GGYKLSRDKNNISVYEVLNSLECCMAQTDNKSNDNM---------LQAFWEDTQEKVKEI 114

Query: 122 LTQYSIECL 130
             Q SI+ L
Sbjct: 115 F-QLSIKEL 122


>gi|42526191|ref|NP_971289.1| hypothetical protein TDE0676 [Treponema denticola ATCC 35405]
 gi|41816303|gb|AAS11170.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 139

 Score = 97.7 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    +  L+       D       I+ +  ++ + + KIL  L KAG+VET  G
Sbjct: 1   MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
             GG  L + AD+IT+LDV  A    +E   +          CP+       L   L  A
Sbjct: 61  V-GGSHLAQTADKITLLDVYNAINEGDEERDIFNFHPKPNPKCPVGRKIHLVLDDKLDDA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
            NA  D L++ +I  L ++
Sbjct: 120 QNAMKDSLSKTTIADLSKD 138


>gi|255970632|ref|ZP_05421218.1| rrf2 family protein [Enterococcus faecalis T1]
 gi|255974212|ref|ZP_05424798.1| rrf2 family protein [Enterococcus faecalis T2]
 gi|256618068|ref|ZP_05474914.1| YwnA [Enterococcus faecalis ATCC 4200]
 gi|256761007|ref|ZP_05501587.1| rrf2 family protein [Enterococcus faecalis T3]
 gi|256958450|ref|ZP_05562621.1| YwnA [Enterococcus faecalis DS5]
 gi|256960515|ref|ZP_05564686.1| YwnA [Enterococcus faecalis Merz96]
 gi|256963008|ref|ZP_05567179.1| YwnA [Enterococcus faecalis HIP11704]
 gi|257078238|ref|ZP_05572599.1| YwnA [Enterococcus faecalis JH1]
 gi|257080433|ref|ZP_05574794.1| rrf2 family protein [Enterococcus faecalis E1Sol]
 gi|257083155|ref|ZP_05577516.1| rrf2 family protein [Enterococcus faecalis Fly1]
 gi|257088279|ref|ZP_05582640.1| YwnA [Enterococcus faecalis D6]
 gi|257091410|ref|ZP_05585771.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257418014|ref|ZP_05595008.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11]
 gi|257420384|ref|ZP_05597374.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|255961650|gb|EET94126.1| rrf2 family protein [Enterococcus faecalis T1]
 gi|255967084|gb|EET97706.1| rrf2 family protein [Enterococcus faecalis T2]
 gi|256597595|gb|EEU16771.1| YwnA [Enterococcus faecalis ATCC 4200]
 gi|256682258|gb|EEU21953.1| rrf2 family protein [Enterococcus faecalis T3]
 gi|256948946|gb|EEU65578.1| YwnA [Enterococcus faecalis DS5]
 gi|256951011|gb|EEU67643.1| YwnA [Enterococcus faecalis Merz96]
 gi|256953504|gb|EEU70136.1| YwnA [Enterococcus faecalis HIP11704]
 gi|256986268|gb|EEU73570.1| YwnA [Enterococcus faecalis JH1]
 gi|256988463|gb|EEU75765.1| rrf2 family protein [Enterococcus faecalis E1Sol]
 gi|256991185|gb|EEU78487.1| rrf2 family protein [Enterococcus faecalis Fly1]
 gi|256996309|gb|EEU83611.1| YwnA [Enterococcus faecalis D6]
 gi|257000222|gb|EEU86742.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257159842|gb|EEU89802.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11]
 gi|257162208|gb|EEU92168.1| conserved hypothetical protein [Enterococcus faecalis X98]
          Length = 139

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ +    I +L               IA +   + + + +++  L KAG++ ++RG   
Sbjct: 1   MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGAN- 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAF 118
              L +  ++I++ ++  A E    +     +   +C +  +  + SVL     K     
Sbjct: 60  KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQKM 117

Query: 119 FDVLTQYSIECLVRN 133
            + L   ++  ++  
Sbjct: 118 EEELKSITLADVIHE 132


>gi|260587111|ref|ZP_05853024.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583]
 gi|260542601|gb|EEX23170.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583]
          Length = 223

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
           + +I+  L K   VE V+G+ GG  L +      I D+++ TE       C   +   C 
Sbjct: 123 IERIMPVLSKNHYVEGVQGKGGGYCLAKEPKDYRIGDILRLTEGQLVPVACLECNAETCK 182

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
               C    + ++  +   +     ++  L++
Sbjct: 183 RANICKTFPMWKEFHHMVNNYFDNITLSDLMK 214


>gi|254509783|ref|ZP_05121850.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533494|gb|EEE36482.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium KLH11]
          Length = 134

 Score = 97.3 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     S IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGKLREAGLLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
            GG RL RP   I++ DV  A +E    ++   S    C +  +    ++ VL +   + 
Sbjct: 61  AGGWRLARPPQNISLADVYLALDERLVASD-EISEAPACSVEHALQKRVSGVLEEIEQSL 119

Query: 119 FDVLTQYSIECL 130
              L + SI  +
Sbjct: 120 VQKLGETSISEV 131


>gi|229172640|ref|ZP_04300199.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
 gi|228611111|gb|EEK68374.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
          Length = 143

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         IAE+   + + + K++  L +AG V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSLCTSDYIAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHMHEQPNPDCPIGANIQAVLEVILIQAQS 119

Query: 117 AFFDVLTQYSIECL 130
           A  ++L   ++  L
Sbjct: 120 AMEEILRNITMGHL 133


>gi|146320050|ref|YP_001199761.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|253751100|ref|YP_003024241.1| transcriptional regulator [Streptococcus suis SC84]
 gi|253753001|ref|YP_003026141.1| transcriptional regulator [Streptococcus suis P1/7]
 gi|145690856|gb|ABP91361.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|251815389|emb|CAZ50962.1| putative transcriptional regulator protein [Streptococcus suis
           SC84]
 gi|251819246|emb|CAR44507.1| putative transcriptional regulator protein [Streptococcus suis
           P1/7]
 gi|292557653|gb|ADE30654.1| Transcriptional regulator, Rrf2 [Streptococcus suis GZ1]
 gi|319757362|gb|ADV69304.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 139

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +      + IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             GG RL +  DQIT+L V +A E   E   +          C +  +    L S L  A
Sbjct: 61  I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
            +A  + L +  +  L+  
Sbjct: 120 QSALENELAKTRLADLLAE 138


>gi|253701416|ref|YP_003022605.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Geobacter sp. M21]
 gi|251776266|gb|ACT18847.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
          Length = 154

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A   +     S IA+   IS   L K+++ LV  G+V+ +RG 
Sbjct: 1   MKLNKASLFALISVLELASDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R     ++ T+LD+++  E      +    +K   P++    L SV  +       
Sbjct: 61  GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVISE--LHSVTSEIDTVTRA 118

Query: 121 VLTQYSIECLVRN 133
           +L   ++  L++N
Sbjct: 119 ILDTITLSTLLKN 131


>gi|253576663|ref|ZP_04853990.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843873|gb|EES71894.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 145

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +L    I  D       IA +   + + + +I+  L KAG+VE   G 
Sbjct: 1   MTISSRFSVAIHILSLLEISKDEICTSEYIAGSVNTNPVVIRRIMGMLSKAGLVEVRTGV 60

Query: 61  RGGVRLCRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGS--CGLTSVLRKA 114
            G  +L R  DQIT+LDV +A     E+  F          DC +  +    +  +  KA
Sbjct: 61  AG-AKLSRQLDQITLLDVYRAVHVVEEDGLFAV--HDQTNPDCLVGKNIQAAIEPIFSKA 117

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  + L   +++ +V  
Sbjct: 118 QKAMENTLAAVTLQDVVNE 136


>gi|223932766|ref|ZP_03624764.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|330832047|ref|YP_004400872.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3]
 gi|223898599|gb|EEF64962.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|329306270|gb|AEB80686.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           ST3]
          Length = 139

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +      + IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             GG RL +  DQIT+L V +A E   E   +          C +  +    L S L  A
Sbjct: 61  V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
            +A  + L +  +  L+  
Sbjct: 120 QSALENELAKTRLADLLAE 138


>gi|197117827|ref|YP_002138254.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
 gi|197087187|gb|ACH38458.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
          Length = 154

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A   +     S IA+   IS   L K+++ LV  G+V+ +RG 
Sbjct: 1   MKLNKASLFALISVLELARDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R     ++ T+LD+++  E      +    +K   P+V    L SV  +       
Sbjct: 61  GGGYRFAGNVNRTTLLDIIQLFETLESELDLPHWNKAAEPVVSE--LHSVTSEIDTVTRA 118

Query: 121 VLTQYSIECLVRN 133
           +L   ++  +++N
Sbjct: 119 ILDTVTLATVLKN 131


>gi|163939768|ref|YP_001644652.1| BadM/Rrf2 family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132791|ref|ZP_04261636.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
 gi|229166820|ref|ZP_04294568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|163861965|gb|ABY43024.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
           weihenstephanensis KBAB4]
 gi|228616623|gb|EEK73700.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
 gi|228650618|gb|EEL06608.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
          Length = 143

 Score = 97.3 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +L     +         +AE+   + + + KI   L +A  V   RG 
Sbjct: 1   MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKITSYLKQAEFVYVKRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +
Sbjct: 61  -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
           A  +VL   ++  L     S+++  NA
Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143


>gi|269122202|ref|YP_003310379.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Sebaldella termitidis ATCC 33386]
 gi|268616080|gb|ACZ10448.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
           ATCC 33386]
          Length = 137

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +L+      D       IA +   + + + +I+  L +AG+++   G 
Sbjct: 1   MKISSRFSVAIHILVLLECGKDKIFTSEFIAGSVNTNPVVIRRIMGKLKEAGLIDVKSG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG  L +  ++I++ DV KA E   +  +         DCP+       L   L KA  
Sbjct: 60  TGGAHLLKAPEEISLYDVYKAGEVVSAGELFSIHEHPNTDCPVGAKIQGVLEIFLLKAQE 119

Query: 117 AFFDVLTQYSIECLVR 132
           A   VL   SI+ ++ 
Sbjct: 120 AMEQVLKDTSIKDILE 135


>gi|332667399|ref|YP_004450187.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336213|gb|AEE53314.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 138

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K   Y IR ++Y A H        + +I EA  +   FL K+LQ L +  ++ + +G 
Sbjct: 2   FSKSCQYAIRAVLYLAEHGKEGQCVGVKEITEALEVPGPFLAKLLQQLSRNQLIGSTKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     +  ++ V++  +       C       C     C L             
Sbjct: 62  HGGFCMSPKHLEAPLIMVIECIDGPEVFTSCVLGLPA-CNAANPCYLHHQSLAYKQGMLK 120

Query: 121 VLTQYSIECLVRNRSSIK 138
           +L   +I  + R    ++
Sbjct: 121 ILKDKTIAEVARQVPELR 138


>gi|237794684|ref|YP_002862236.1| putative transcriptional regulator [Clostridium botulinum Ba4 str.
           657]
 gi|229261414|gb|ACQ52447.1| putative transcriptional regulator [Clostridium botulinum Ba4 str.
           657]
          Length = 137

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHMTLCKIQRKL 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + + ++  
Sbjct: 121 VSELEAVNFQEILDE 135


>gi|170016479|ref|YP_001727398.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803336|gb|ACA81954.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 166

 Score = 96.9 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++   +  + VL+  A+  D  P +   ++    +SE +L K ++ LV AGIV+ +  
Sbjct: 1   MKMSNAVEQSLVVLVMLALQKDELPIKSYLLSNRLEVSESYLKKTMRKLVVAGIVQAIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCG------ 106
           + GG +L R    IT+LDV +A E               F +   + P+           
Sbjct: 61  KEGGFKLARSIADITLLDVYEAIEGDGSFIHSTQLADRIFLNQASNKPVEDVQQALEVAV 120

Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133
             + +V   A   F   L  Y+I  L+++
Sbjct: 121 DDVLTVFNDAEADFKKRLQNYTIAKLLQH 149


>gi|307721561|ref|YP_003892701.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979654|gb|ADN09689.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
           autotrophica DSM 16294]
          Length = 134

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 3   LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ ++ YG+  +        +   +I +IA    IS  +L +IL  L K G V +VRG  
Sbjct: 4   VSTKSLYGVAAMHALYNSPRNKLMQIKEIAAVTQISHGYLEQILSTLKKHGFVISVRGAN 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L   A +I +LDVV+A E   F         +         L S  +        V
Sbjct: 64  GGYKLASDASKIIVLDVVEALEGELFTVSQNVGASV--------VLDSFWKDIQEKVRAV 115

Query: 122 LTQYSIECL 130
                +  L
Sbjct: 116 F-NIKLSEL 123


>gi|229121497|ref|ZP_04250724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
 gi|228661961|gb|EEL17574.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
          Length = 147

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG  
Sbjct: 6   KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP- 64

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
           GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +A
Sbjct: 65  GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQSA 124

Query: 118 FFDVLTQYSIECL 130
             +VL   ++  L
Sbjct: 125 MEEVLRNITMGQL 137


>gi|134099141|ref|YP_001104802.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291009886|ref|ZP_06567859.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133911764|emb|CAM01877.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 163

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +H           +IA +   + + + ++L  +  AG+V + RG   G  L
Sbjct: 10  AAHALTWIELHHRREGGTATSERIAGSVNTNPVVIRRLLGRMRDAGLVHSRRGAEAGWVL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVL 122
            RP +++T+ DV +A E +   A   +   +DCP+    G+  V+R    +   A    L
Sbjct: 70  ARPLEEMTLRDVYEAIEPAPLFAVHRSEPNLDCPIGS--GIRPVMRLAYARVEQAVRAEL 127

Query: 123 TQYSIECLVRN 133
              ++  ++R+
Sbjct: 128 ECITLADVLRD 138


>gi|257417296|ref|ZP_05594290.1| YwnA [Enterococcus faecalis AR01/DG]
 gi|257159124|gb|EEU89084.1| YwnA [Enterococcus faecalis ARO1/DG]
          Length = 139

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ +    I +L               IA +   + + + +++  L KAG++ ++RG   
Sbjct: 1   MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGAN- 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAF 118
              L +  ++I++ ++  A E    +     +   +C +  +  + SVL     K     
Sbjct: 60  KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGAN--IQSVLETEFTKVQQKM 117

Query: 119 FDVLTQYSIECLVRN 133
            + L   ++  ++  
Sbjct: 118 AEELKSITLADVIHE 132


>gi|304437884|ref|ZP_07397831.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369106|gb|EFM22784.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 156

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 5/141 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+   +     P     ++ +     + + +IL  L +AG++   RG
Sbjct: 12  MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
           R GG  + +    IT+ D+  A E      +     +    CP+       L   L    
Sbjct: 72  REGGAHIAKELTDITLADIFCAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
           +A    + + ++  +++    
Sbjct: 132 HAMEKKMEETTLADIIKEARE 152


>gi|306829070|ref|ZP_07462260.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|322374754|ref|ZP_08049268.1| Rrf2 family protein [Streptococcus sp. C300]
 gi|304428156|gb|EFM31246.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
           6249]
 gi|321280254|gb|EFX57293.1| Rrf2 family protein [Streptococcus sp. C300]
          Length = 145

 Score = 96.9 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +++  A+ + D       +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIATHMMISIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++LDV +A E   +S  +     +   +CP+  +  + +VL     
Sbjct: 61  -TGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117

Query: 113 KALNAFFDVLTQYSIECLVRN 133
               A  + L Q S+  +V  
Sbjct: 118 DVQAAMENQLRQTSLAQVVAE 138


>gi|229552795|ref|ZP_04441520.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258540586|ref|YP_003175085.1| transcriptional regulator Rrf2 family [Lactobacillus rhamnosus Lc
           705]
 gi|229313777|gb|EEN79750.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257152262|emb|CAR91234.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus Lc
           705]
          Length = 146

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M  +      + +  Y      A H DY   I +I+E   I    + KI   L K+GI+ 
Sbjct: 1   MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKISSTLKKSGILT 59

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
           +  G  GG+RL +    IT+ +++ A E +  + +          + G          T+
Sbjct: 60  SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLTASTN 119

Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
           VL +A +A   VL Q SI  L     +
Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146


>gi|170760233|ref|YP_001786721.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407222|gb|ACA55633.1| putative transcriptional regulator [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 137

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLRDVIEAIDGPICINRCTYDPRYCNAGKNGNCEIHRSLCKIQRKL 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + E ++  
Sbjct: 121 VSELEAVNFEEILDK 135


>gi|168705374|ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 140

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R      VL   A  +D       IA +   + + + +IL  L +AG+V T  G 
Sbjct: 1   MTRSSRFVVAAHVLTLLA-RSDGALTSEYIAGSVNTNPVVIRRILAVLARAGLVATQEGT 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG RL +PA +IT+  V +A E     A         CP+ G     L   LR A  A 
Sbjct: 60  GGGGRLAKPAAEITLRAVYEAVEPDALFALHPRDPNPLCPVGGGIQSALEPTLRAAETAL 119

Query: 119 FDVLTQYSIECLV 131
              L   S+  LV
Sbjct: 120 LGSLAGTSVADLV 132


>gi|229150178|ref|ZP_04278400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
 gi|228633297|gb|EEK89904.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
          Length = 146

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L     +         +AE+   + + + KI+  L +AG V   RG  
Sbjct: 5   KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP- 63

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
           GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +A
Sbjct: 64  GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSA 123

Query: 118 FFDVLTQYSIECL 130
             +VL   ++  L
Sbjct: 124 MEEVLRNITMGQL 136


>gi|117164456|emb|CAJ88001.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 145

 Score = 96.9 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M    R    + VL + A+ +          QIA +   + + + + L  L KAG+V   
Sbjct: 1   MSANSRMTIAVHVLTWIALVHGRGRDVVTSDQIATSVATNPVVIRRSLADLRKAGLVTVR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
           +G   G  L R  + I +LDV +A  +    A   +     CP+       L  V   A 
Sbjct: 61  QGAGAGYTLARAPESIALLDVFQAVHDEPLFALHRSEPNQVCPVGRGIQPALRHVYTDAE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
            AF   L   SI  ++R+
Sbjct: 121 EAFRRELAGVSIADVLRD 138


>gi|281491024|ref|YP_003353004.1| Rrf2 family transcriptional regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374782|gb|ADA64302.1| Transcriptional regulator, Rrf2 family [Lactococcus lactis subsp.
           lactis KF147]
          Length = 156

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  A +  +       +A    +S  +L KI++ LV  G++ +  G
Sbjct: 1   MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L +    I+  DV  A E    + +     +     +      C +TS L +  
Sbjct: 61  KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKATRCAITSALDEIE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N     L+  S+  +   
Sbjct: 121 NTLVRTLSNVSLAQVADE 138


>gi|253580214|ref|ZP_04857481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848733|gb|EES76696.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 145

 Score = 96.6 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L++ A+ ++     ++IAE+   +  ++ +++  L  AGIV   +G 
Sbjct: 1   MKYSTKLSDTIHILIFIALGDEEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L +PAD+I + D+ +A E    +         DC +  +    +     +  N  
Sbjct: 60  HANAALAKPADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119

Query: 119 FDVLTQYSIECLVRN 133
            + +   +++ ++  
Sbjct: 120 DEKMKSITLQDIIDR 134


>gi|291551332|emb|CBL27594.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
          Length = 158

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT  TDY IR++ Y A         S++++   +   ++ KI + L +AGI++   G 
Sbjct: 1  MQLTSTTDYAIRIVCYLAAQR-QMISTSELSQELSVPSNYIPKITKKLKQAGIIKACEGT 59

Query: 61 RGGVRLCRPADQITILDVV 79
           GG  L +  + I++++++
Sbjct: 60 NGGYMLAKQPENISLMEII 78


>gi|257457624|ref|ZP_05622791.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
 gi|257445010|gb|EEV20086.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
          Length = 141

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    +  L+       DY      IAE+  ++ + + KIL  L KAG+VET  G
Sbjct: 1   MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVETAAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESF---FVAECFASHKIDCPLVGSCG--LTSVLRKA 114
             GG  L +  ++I +L + KA  E      V     S    CPL  +    L  VL  A
Sbjct: 61  V-GGSHLVKKPEEINLLSIYKAVNEDNVHRTVFSFHPSPNSQCPLGKNIHRILDPVLDNA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A    L + ++  ++  
Sbjct: 120 QKALEVELQKTTLADMLSQ 138


>gi|325261733|ref|ZP_08128471.1| Rrf2 family protein [Clostridium sp. D5]
 gi|324033187|gb|EGB94464.1| Rrf2 family protein [Clostridium sp. D5]
          Length = 128

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M LT+  DY IR+L      +   + +  I +A  + E F +KI++ L KAG V   RG 
Sbjct: 1   MLLTRENDYAIRILRSL--KDKEKHTVKDICQAEEVPEAFAYKIIRKLQKAGFVAVERGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
            GG RL      +T+ DVV A +    +  C       C      +C + + L K     
Sbjct: 59  AGGCRLGTDLKSLTLYDVVTAVDAEPLIMPCMRQ---TCSRNAGDACKVHAELMKIQKVL 115

Query: 119 FDVLTQYSIECL 130
            + L    +  L
Sbjct: 116 IEELKSRRLFDL 127


>gi|255322125|ref|ZP_05363272.1| RRF2 family protein [Campylobacter showae RM3277]
 gi|255300823|gb|EET80093.1| RRF2 family protein [Campylobacter showae RM3277]
          Length = 151

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + ++    I +L+ C    D  N    +A     + + +  I++ L  A ++    G 
Sbjct: 12  MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTIGTNPVIVRNIIRLLKSANLINVSAG- 70

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG  L +  +QIT+ D+  A  E    + +   +    CPL G     LT     A  A
Sbjct: 71  TGGASLAKKPEQITLFDIFSAVNEGENDIFKIHKNSPPPCPLGGRIEALLTPKFGSAQQA 130

Query: 118 FFDVLTQYSIECLVRN 133
            FD L   +++ L+  
Sbjct: 131 MFDSLAGVNLQNLLDE 146


>gi|88856365|ref|ZP_01131024.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
 gi|88814449|gb|EAR24312.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
          Length = 141

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 11  IRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +R++M   A+      +   IA+        + K +  L + G++E VRGR GGVR+   
Sbjct: 3   LRIIMLLSAMPVFELEKTKVIAQKIDTPYNHVSKAIVRLRELGMIEAVRGRSGGVRISDA 62

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
             Q T+  V++  +    +A+C     + CPL+  CGL   LR A  AF+  L    I  
Sbjct: 63  GRQATVGWVLRQLDTRTDLADCETPDGL-CPLIDGCGLRGALRLAREAFYAALDDVVISS 121

Query: 130 LVRNRSS 136
           L + RS 
Sbjct: 122 LRQPRSD 128


>gi|228477644|ref|ZP_04062273.1| Rrf2 family protein [Streptococcus salivarius SK126]
 gi|228250533|gb|EEK09744.1| Rrf2 family protein [Streptococcus salivarius SK126]
          Length = 149

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDFMAGSVGVNPVIIRKTLSQLRKADLISVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  GG  L +  ++I +L V +A +    S  +     +    CP+  +  +  +L ++L
Sbjct: 61  G-TGGASLLKDPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117

Query: 116 N----AFFDVLTQYSIECLVRNRSS 136
                A    L + ++  ++++  +
Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142


>gi|322392211|ref|ZP_08065672.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
           700780]
 gi|321144746|gb|EFX40146.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
           700780]
          Length = 158

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHL+   +  I VL+    +          ++E   +S+ +L KI++ L   G+V++VRG
Sbjct: 1   MHLSSGWEQSIYVLLMLDQLPEGEYINSIFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GG+ L RP  QI+  DV  A E    + E          + +      C +T+ L   
Sbjct: 61  KNGGIALSRPLSQISFYDVFVAIEGKNRIFESQNLLKRFLGEEEGKKAKRCVVTNSLDMI 120

Query: 115 LNAFFDVLTQYSIECLV 131
            N     LT  ++  + 
Sbjct: 121 ENTLVSTLTSITLSQVA 137


>gi|302023274|ref|ZP_07248485.1| transcriptional regulator protein [Streptococcus suis 05HAS68]
          Length = 139

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +      + IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             GG RL +  DQIT+L V +A E   E   +          C +  +    + S +  A
Sbjct: 61  V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLIDSRMEHA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
            +A  + L +  +  L+  
Sbjct: 120 QSALENELAKTRLADLLAE 138


>gi|322376528|ref|ZP_08051021.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
           M334]
 gi|321282335|gb|EFX59342.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
           M334]
          Length = 158

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+      +        ++E   +S+ +L KI++ L   G+V++VRG
Sbjct: 1   MRLSSGWEQSVYVLLMLNQLPEGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GGV L +P  QIT  DV  A E    + E            +      C +T+ L   
Sbjct: 61  KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNKESKKAKRCVVTNSLDII 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
            N     LT  ++  +   
Sbjct: 121 ENTLVATLTSITLSQVAHQ 139


>gi|326406059|gb|ADZ63130.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
           subsp. lactis CV56]
          Length = 156

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  A +  +       +A    +S  +L KI++ LV  G++ +  G
Sbjct: 1   MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L +    I+  DV  A E    + +     +     +      C +TS L +  
Sbjct: 61  KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N     L+  S+  +   
Sbjct: 121 NTLVRTLSNVSLAQVADE 138


>gi|89894263|ref|YP_517750.1| hypothetical protein DSY1517 [Desulfitobacterium hafniense Y51]
 gi|219668676|ref|YP_002459111.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Desulfitobacterium hafniense DCB-2]
 gi|89333711|dbj|BAE83306.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538936|gb|ACL20675.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 151

 Score = 96.6 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+ R    +++L+  A    D       +A +   + + + +I+  L KAG++    G
Sbjct: 1   MQLSSRFPVAVQILIIIAWCPEDVKVTSEALAVSVNTNPVLIRRIMGYLKKAGLIAISSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG +L R  ++IT+L V +A E  +   +    A     CP+   C +  VLR    +
Sbjct: 61  -TGGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCPIG--CRINDVLRPPLEE 117

Query: 114 ALNAFFDVLTQYSIECLV 131
           A NA    L + +I+ L+
Sbjct: 118 ARNALEGSLAKVTIQELL 135


>gi|163731797|ref|ZP_02139244.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
 gi|161395251|gb|EDQ19573.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
          Length = 147

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 13  VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+   D    +  IA    IS  +L ++   L +A +V +VRG  GG RL R   
Sbjct: 3   ALADIAMQPGDKLVSLGDIATRQAISLAYLEQLFVKLRRADLVTSVRGPGGGYRLKRSPS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
            I +++++ A +E+       A          +  LT+ L ++L+A  +  L Q  +  +
Sbjct: 63  DIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHVYVFLHQTRLSDV 122

Query: 131 VRNR 134
           + N 
Sbjct: 123 IANE 126


>gi|298246777|ref|ZP_06970582.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297549436|gb|EFH83302.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 154

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 10  GIRVLMYCAIH----NDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +  L + A       D    +   +IAE+   + + L ++L  + K  +V   RG   G
Sbjct: 10  AVHTLTWMARRMANYGDQYDFSTSREIAESVNTNPVILRELLGMMEKQHLVRVQRGSNAG 69

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFF 119
            +L R  ++IT+L+V +  +               CP+   CG+ S L+       +A  
Sbjct: 70  WKLARKPEEITLLEVYQVVKPHTMFTLHHTPPNPQCPIG--CGIGSALQGIYANVQDAME 127

Query: 120 DVLTQYSIECLVRN 133
             L + +I  ++R+
Sbjct: 128 QELARTTIADVLRD 141


>gi|322516487|ref|ZP_08069406.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
 gi|322125006|gb|EFX96418.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
          Length = 149

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 12/152 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLISVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112
           G  GG  L +  ++I +L V +A +    S  +     +    CP+  +  +  +L    
Sbjct: 61  G-SGGATLAKTPEEINLLQVYRAVDSIGPSGKLFSFHDNPNPACPVGRN--IHGILDQSL 117

Query: 113 -KALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
                A    L + ++  ++++  +  K   A
Sbjct: 118 VDVQMAMEKELEKKTLAGILKDAKANWKEVGA 149


>gi|154497763|ref|ZP_02036141.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC
           29799]
 gi|150273261|gb|EDN00406.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC
           29799]
          Length = 152

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L + ++        ++IAE+   +  ++ +++  L  AG++ + +G 
Sbjct: 1   MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAKLKSAGMITSSQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
           +    L R  D+IT+LDV +A E +  +         +C   +     +    ++   A 
Sbjct: 60  QANAELTRRPDEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQKAA 119

Query: 119 FDVLTQYSIECLVRN 133
              +   +++ ++  
Sbjct: 120 EQKMQTITLQDIIDR 134


>gi|56965547|ref|YP_177281.1| hypothetical protein ABC3789 [Bacillus clausii KSM-K16]
 gi|56911793|dbj|BAD66320.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 142

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    + +    A           +A +   + + + +I   L KAGI+E   G 
Sbjct: 1   MKISSRFSVAVHIGALLATERTAVLTSEWMAASVNTNPVVIRRISAQLKKAGIIEGRSG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG +L +  D++T+LD  +A +      +    +    +C +  +    L  +L KA  
Sbjct: 60  TGGAKLAKDPDELTLLDFYQAVQVVADNELFHIHSEPNPNCYVGANIQGVLEVMLGKAQR 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A  +VL   ++  ++ +
Sbjct: 120 AMEEVLASMTLADVLAS 136


>gi|289167875|ref|YP_003446144.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907442|emb|CBJ22279.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 158

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  I VL+    +          ++E   +S+ +L KI++ L   G+V++VRG
Sbjct: 1   MRLSSGWEQSIYVLLMLDQLAKGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GGV L +P  QIT  DV  A E    + E            +      C +T+ L   
Sbjct: 61  KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNEESKKAKRCVVTNSLDII 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
            N     LT  ++  +   
Sbjct: 121 ENTLVATLTSITLSQVAHQ 139


>gi|254460865|ref|ZP_05074281.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
           bacterium HTCC2083]
 gi|206677454|gb|EDZ41941.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 142

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   +     + IAE    + + + ++L  L +AG++ +V+G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGDPERKRTSADIAEHAGTNPVVVRRVLGKLREAGLLASVKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
            GG  L +PA+ IT+ DV  A +E         +  + C +          VL +     
Sbjct: 61  AGGWSLAKPANSITLADVYIALDERLVSGGEQDAEAMYCSIERDLQTRVADVLGEIEENL 120

Query: 119 FDVLTQYSIECL 130
              L++ SI  +
Sbjct: 121 VQRLSETSITDV 132


>gi|199598905|ref|ZP_03212315.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
 gi|199590213|gb|EDY98309.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
          Length = 146

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 12/147 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M  +      + +  Y      A H DY   I +I+E   I    + KI   L K+GI+ 
Sbjct: 1   MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKISSTLKKSGILT 59

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
           +  G  GG+RL +    IT+ +++ A E +  + +          + G          T+
Sbjct: 60  SKTGLNGGLRLAKTPQTITVYEILAAIEGTAPLFKLHQEIDPAAFVNGERVTSWLVASTN 119

Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
           VL +A +A   VL Q SI  L     +
Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146


>gi|154174545|ref|YP_001408025.1| BadM/Rrf2 family transcriptional regulator [Campylobacter curvus
           525.92]
 gi|112803332|gb|EAU00676.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter curvus
           525.92]
          Length = 134

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +  L+  +     P  +  I+    IS+ FL KILQ L K  I+++ +  
Sbjct: 1   MLFTKASEYALLSLILIS-QKSSPVDVDTISNELKISKSFLAKILQNLAKEQILKSYKVA 59

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG  L      I+I  +++  E+    V EC  S    CP     SC +  +     N 
Sbjct: 60  NGGFALQADPQNISIKTIIECAEKREVSVFECSTSADG-CPSAKASSCQIWLMFTGLQNK 118

Query: 118 FFDVLTQYSIECLVRN 133
             ++L    +  +++ 
Sbjct: 119 VDEMLDAIKLSDIIKK 134


>gi|56418891|ref|YP_146209.1| hypothetical protein GK0356 [Geobacillus kaustophilus HTA426]
 gi|56378733|dbj|BAD74641.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 138

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L   A           IA++   + + + +I+  L KAG+V+   G  
Sbjct: 3   QISTRFSMAVHILCLLATSPAD-CTGDFIAQSVNTNPVIIRRIMGMLKKAGLVDVRPGV- 60

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
           GG  L +P DQIT+LDV +A    E+  +        I CP+  +    L + L+ A  A
Sbjct: 61  GGASLRKPPDQITLLDVYRAVGVVETDQLFRIHEHPNIQCPVGRNIEAVLQAELKAAQAA 120

Query: 118 FFDVLTQYSIECLVRN 133
             + L+Q +I  L+  
Sbjct: 121 MEERLSQTTISRLIAQ 136


>gi|213612431|ref|ZP_03370257.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 87

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG+RL +PA+ I I DVV+  E    +  C +     C +  +C L   L KA+ +F
Sbjct: 6   GENGGIRLGKPANTICIGDVVRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSF 61

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
              L  Y++  LV     + K+ 
Sbjct: 62  LKELDNYTLADLVEENQPLYKLL 84


>gi|291522993|emb|CBK81286.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
           GD/7]
          Length = 145

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGIV   +G 
Sbjct: 1   MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L + AD+I + D+ +A E    +         +C +  +    +     +  N  
Sbjct: 60  HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPNCGIGINIQFAIGDFYHEIQNMI 119

Query: 119 FDVLTQYSIECLVRN 133
            + +   +++ ++  
Sbjct: 120 DEKMKSITLQDIIDR 134


>gi|15672540|ref|NP_266714.1| hypothetical protein L153086 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13432280|sp|Q48660|YFFB_LACLA RecName: Full=Putative HTH-type transcriptional regulator yffB
 gi|12723445|gb|AAK04656.1|AE006290_1 hypothetical protein L153086 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 156

 Score = 96.2 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  A +  +       +A    +S  +L KI++ LV  G++ +  G
Sbjct: 1   MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L +    I+  DV  A E    + +     +     +      C +TS L +  
Sbjct: 61  KNGGFSLNKELHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N     L+  S+  +   
Sbjct: 121 NTLVRTLSNVSLAQVADE 138


>gi|118475517|ref|YP_892257.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414743|gb|ABK83163.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 134

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK ++Y +   +     ++ P  +  ++    IS+ FL KILQ L K GI+ + +G 
Sbjct: 1   MLFTKASEYALLS-LILLSQSNSPKDVDTMSTELGISKSFLAKILQNLAKEGILNSFKGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
            GG  L      I+I  ++++ E+    V EC ++ + DCP      C +  +       
Sbjct: 60  NGGFILANKPANISIKKILESAEKRKASVFEC-SNARSDCPSNKGDICKMWPMFNSLQLK 118

Query: 118 FFDVLTQYSIECLVRN 133
             D L   S+  +++ 
Sbjct: 119 VDDFLDNISLADIIKK 134


>gi|295109399|emb|CBL23352.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
           A2-162]
          Length = 149

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + V++  AI+ +     + IAE+   +  F+ +++  L KAG++ +V G 
Sbjct: 1   MKYSTKLSDTVHVMVLIAINKEKSLSSASIAESVHTNPGFVRQLMLKLKKAGLMTSVAG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PADQIT+LD+ KA E    +         +C +  +    L     +     
Sbjct: 60  HARPSLSKPADQITLLDIYKAVEGDKPLLHLDTHTNPECGVGINIQLSLQGFYNEIQKTA 119

Query: 119 FDVLTQYSIECLVR---NRSSIKKIFNA 143
            + +   +++ ++     R SI+    +
Sbjct: 120 EEKMNTITLQDIIDIYYQRISIENNLQS 147


>gi|113868325|ref|YP_726814.1| putative transcriptional regulator [Ralstonia eutropha H16]
 gi|113527101|emb|CAJ93446.1| Putative Transcriptional regulator [Ralstonia eutropha H16]
          Length = 136

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L   A   + P   S IA +   +   + +++  L +AG+V T  G  GG  L RP
Sbjct: 2   AVHILTLLASSAE-PVPSSLIAASVGTNPALIRRLVGQLAEAGLVATTMGSTGGATLARP 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
           A  IT+LDV +  E +  +    ++    CP+       L  V  +A  A  D L   +I
Sbjct: 61  AASITLLDVFRVVETTALITLHQSAPNPACPVGREITGALRKVADRAQAAMDDTLAGATI 120

Query: 128 ECLVRN 133
             ++ +
Sbjct: 121 ASMLAD 126


>gi|125623396|ref|YP_001031879.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|806485|gb|AAC41452.1| ORF156 [Lactococcus lactis subsp. cremoris]
 gi|124492204|emb|CAL97133.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070144|gb|ADJ59544.1| putative transcriptional regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 156

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  A +  +       +A    +S  +L KI++ LV  G++ +  G
Sbjct: 1   MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L +    I+  DV  A E    + +     +     +      C +T+ L +  
Sbjct: 61  KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N     L+  S+  +   
Sbjct: 121 NTLVRTLSNVSLAQVADE 138


>gi|78223304|ref|YP_385051.1| BadM/Rrf2 family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194559|gb|ABB32326.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
           metallireducens GS-15]
          Length = 143

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A   +      +IA    +S   L KI++ LV  G+V+ VRG 
Sbjct: 1   MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R      + T+LD+++  E      +      +D P++    L S+  +  +    
Sbjct: 61  GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPILEE--LKSIANEIDDLTKA 118

Query: 121 VLTQYSIE 128
           VL   ++E
Sbjct: 119 VLDTITLE 126


>gi|237748113|ref|ZP_04578593.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379475|gb|EEO29566.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 146

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +  Y +++++  A+ + D    I+ I+    IS   L  + + L  AG++ET  G
Sbjct: 6   MRIATKERYALKLMVDLALQDKDEYISINSISTRQGISIASLRAVARALTAAGLIETNTG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
                RL R A QI I ++++AT+  F    C       C     C           + F
Sbjct: 66  HLYHYRLNRDAAQIPIPEILRATDGKFACTACSEIEPEKCTRHRVCANVLFWEGMQESEF 125

Query: 119 FDVLTQYSIECL 130
               +  ++  L
Sbjct: 126 IGTKSGQTLCDL 137


>gi|162454023|ref|YP_001616390.1| rrf2 family protein [Sorangium cellulosum 'So ce 56']
 gi|161164605|emb|CAN95910.1| rrf2 family protein [Sorangium cellulosum 'So ce 56']
          Length = 148

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
               L   A   D       ++ +   +  FL +IL  L +AG++E   GR GG RL RP
Sbjct: 9   ATHALALLA-QADESCASDALSASINTNPAFLRRILARLSQAGLIEAREGRSGGYRLARP 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLTQY 125
           A +I + +V  A E    +A         CP+    G+     +   A        L Q 
Sbjct: 68  AKKIRLSEVYAAVEPEGAIAPSPCEPNARCPIGS--GIQRAFDEVAEAANAGLLRGLAQK 125

Query: 126 SIECLV 131
           ++  + 
Sbjct: 126 TVADIA 131


>gi|89054747|ref|YP_510198.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864296|gb|ABD55173.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
          Length = 136

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     + IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLGHMAGAPDKLRTSADIADHAGTNPVVVRRVLGRLREAGLLISEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG RL R    IT+ DV  A +ES  VA   +     C +       ++SV++    + 
Sbjct: 61  AGGWRLARAPQSITLADVYLALDESL-VASVESDDVPSCSVEHALHRRVSSVMKDIEQSL 119

Query: 119 FDVLTQYSIECL 130
            + L + +I  +
Sbjct: 120 IERLGETTISEV 131


>gi|167748199|ref|ZP_02420326.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
 gi|167652191|gb|EDR96320.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
          Length = 184

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    +  L+  A   D       +AE+   + + +  I   L KAGI+   RG 
Sbjct: 13  MRVSTQFTIAVHALIMIAYFPDIRVTSEMVAESVGNNPVIIRNIYGKLKKAGILSIQRG- 71

Query: 61  RGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L + A++IT+ DV +A E      + +   +    CP+  S    L   L++A+N
Sbjct: 72  TGATSLTKTANEITLWDVYQAVETDAVDEIFKFSDTLSGACPVGSSIKELLFIHLQEAVN 131

Query: 117 AFFDVLTQYSIECL 130
           +  D L++ +IE L
Sbjct: 132 SLKDSLSKTTIEEL 145


>gi|170754322|ref|YP_001780964.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
 gi|169119534|gb|ACA43370.1| putative transcriptional regulator [Clostridium botulinum B1 str.
           Okra]
          Length = 137

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV+++ +            I+E   +   FL K+L+ L K+GIV + RG
Sbjct: 1   MKITQEADYALRVILHLSKLGYGERVEARIISEQEVLPLRFLLKLLRKLTKSGIVVSFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + DV++A +    +  C    +  +    G+C +   L K     
Sbjct: 61  VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120

Query: 119 FDVLTQYSIECLVRN 133
              L   + + ++  
Sbjct: 121 VSELEAVNFQEILDK 135


>gi|268610344|ref|ZP_06144071.1| hypothetical protein RflaF_12696 [Ruminococcus flavefaciens FD-1]
          Length = 145

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +    + +L    I           ++ +  ++ + +  +L  L   GIVET +G
Sbjct: 1   MQITSKFTVAVHILTCIDIFGGQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             GG  L +  D+IT+ D+ KA +  +   +     +   DCP+  +  +   +      
Sbjct: 61  -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDDRLEA 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A  A  + L   ++  +V +   I
Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141


>gi|254476371|ref|ZP_05089757.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
 gi|214030614|gb|EEB71449.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
          Length = 134

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A   D     S IA+    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGRLREAGLLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL R    I+  DV  A +E    ++  +          +C +   L+K ++   +
Sbjct: 61  AGGWRLARSPQDISFADVYLALDERLVASDEISE-------APACSVEHALQKRVSGVLE 113

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + Q  I+ L    +SI ++  A
Sbjct: 114 EIEQTLIQKL--GEASISEVRGA 134


>gi|315641499|ref|ZP_07896571.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
           15952]
 gi|315482787|gb|EFU73311.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
           15952]
          Length = 157

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LTK  + G+ V+          P   + I +    S  +  KI++ LV +G+  +V G
Sbjct: 1   MQLTKAFEQGVCVMAMLTTQMPSIPVASATIHQRLGTSPTYTQKIVRKLVVSGLATSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAE----CFASHKIDCPL----VGSCGLTSVL 111
           + GG  L R +  I+ LDVV+A E              +      L      +  +    
Sbjct: 61  QGGGFCLARASKDISCLDVVEAIEGKVVTFPDSQLLHHTFANSSRLVNLATANSIVYQAF 120

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            KA + + + L   SI  ++ +
Sbjct: 121 AKADDQWRNALANVSIADIIHD 142


>gi|284989652|ref|YP_003408206.1| BadM/Rrf2 family transcriptional regulator [Geodermatophilus
           obscurus DSM 43160]
 gi|284062897|gb|ADB73835.1| transcriptional regulator, BadM/Rrf2 family [Geodermatophilus
           obscurus DSM 43160]
          Length = 165

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T R DY +R  +  A          +IA A  I   FL  IL  L  A +V + RGR 
Sbjct: 6   RITARVDYAVRAAVELAAAAPGALTCDRIAAAQGIPSRFLQSILSDLQHARLVTSQRGRE 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAFFD 120
           GG RL  P  +++I  V++   E  F+AE       D    G+   L SV   A  A+  
Sbjct: 66  GGYRLALPPAEVSIARVMRV--EQGFLAEVHGQRPEDVEYSGTAVPLASVWVAAREAYRR 123

Query: 121 VLTQYSIECLVRNR 134
           VL Q ++  +V   
Sbjct: 124 VLEQVTLADVVAGE 137


>gi|253754824|ref|YP_003027964.1| transcriptional regulator [Streptococcus suis BM407]
 gi|251817288|emb|CAZ55018.1| putative transcriptional regulator protein [Streptococcus suis
           BM407]
          Length = 139

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+  +      + IA +  ++ + +  IL  L +AG+VE  RG
Sbjct: 1   MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             GG RL +  DQIT+L V +A E   E   +        + C +  +    L S L  A
Sbjct: 61  I-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNLSCQVGRNIHPLLDSRLENA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
            +A  + L +  +  L+  
Sbjct: 120 QSALENELAKTRLADLLAE 138


>gi|225027880|ref|ZP_03717072.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
 gi|224954827|gb|EEG36036.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
          Length = 145

 Score = 95.8 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGIV   +G 
Sbjct: 1   MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L + AD+I + D+ +A E    +         DC +  +    +     +  N  
Sbjct: 60  HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119

Query: 119 FDVLTQYSIECLVRN 133
            + +   +++ ++  
Sbjct: 120 NEKMKSITLQDIIDR 134


>gi|159898645|ref|YP_001544892.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891684|gb|ABX04764.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 148

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L     + +     S IA +   + + + +IL  L +AG+V T  G 
Sbjct: 1   MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG RL R AD+IT+ D+  ATE    +    +S   DC    +    L+++   A  A 
Sbjct: 61  DGGTRLARSADEITLNDIYHATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAM 120

Query: 119 FDVLTQYSIECLVRN 133
             VL   S+  +V  
Sbjct: 121 QQVLANKSLAEVVNE 135


>gi|30795085|ref|NP_851535.1| hypothetical protein pSLA2-L_p113 [Streptomyces rochei]
 gi|30698458|dbj|BAC76571.1| hypothetical protein [Streptomyces rochei]
          Length = 143

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +H    D       +A +   + + + ++L  +  AG+V + RG   G  L
Sbjct: 10  AAHALAWIELHRRIGDGTATSEGVAGSVNTNPVVIRRLLGRMRDAGLVHSRRGADAGWVL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
            RP + IT+ DV +A E S   A   +   + CP+       +  V  +   A    L +
Sbjct: 70  ARPLEDITLRDVYEAIEPSPLFAMHRSDPNLGCPVGSGIQPAMRPVYARVEEAVRAELAR 129

Query: 125 YSIECLVRN 133
            ++  ++R+
Sbjct: 130 VTLAEVLRD 138


>gi|157692447|ref|YP_001486909.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157681205|gb|ABV62349.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 137

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 7/138 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + ++ + A           IAE+   +   + K++  L +A ++E  RG  
Sbjct: 3   QISSRYPIAVHIMSFIAGVPKE-CTGDFIAESVNSNPAIVRKMMAMLKRADLIEIRRGVG 61

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
           G   L RPA++IT+LDV +A +  E   +   F    I CP+  +    L S L++A  A
Sbjct: 62  GAY-LKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQAA 119

Query: 118 FFDVLTQYSIECLVRNRS 135
             + L Q +I+ L+    
Sbjct: 120 LENHLKQVTIQQLLTEAE 137


>gi|315651088|ref|ZP_07904122.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
           3986]
 gi|315486678|gb|EFU77026.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
           3986]
          Length = 144

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +    + +        N+Y      +A +   + + + KIL  L  AG++   RG
Sbjct: 1   MQISSKFTVALHIFTCVDTFGNEYKITSDFLAGSINTNPVIIRKILSQLKNAGLIMVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
             GGV + RP ++IT  DV +A +  E+  +    A     CP+  +    L   L+   
Sbjct: 61  -TGGVEITRPLNEITFYDVYEAIDPVENGDLFSFHAGPNPQCPVGRNIHVLLDDKLKAVQ 119

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
            A  + + +Y+++ L   +S +K++ 
Sbjct: 120 LAMENEMKKYTLDDL---KSEMKELL 142


>gi|254454314|ref|ZP_05067751.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
           antarcticus 238]
 gi|198268720|gb|EDY92990.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
           antarcticus 238]
          Length = 142

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 13  VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            L   A+        + +++    +S  +L ++   L +AG+VE+VRG  GG RL R   
Sbjct: 3   ALADIALQPVGTLVSLGELSRRQDVSLPYLEQLFVKLRRAGLVESVRGPGGGYRLARRTS 62

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-FFDVLTQYSIECL 130
            I +++++ A +E+       A          +  +T+ L + L+A  +  L Q  +  +
Sbjct: 63  DIRVVEILSAVDETVSAMHQGAGASGGSSGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122

Query: 131 VRN 133
           V N
Sbjct: 123 VDN 125


>gi|295705225|ref|YP_003598300.1| probably rrf2 family transcriptional regulator [Bacillus megaterium
           DSM 319]
 gi|294802884|gb|ADF39950.1| Transcriptional regulator, probably rrf2 family [Bacillus
           megaterium DSM 319]
          Length = 139

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++ A   D+      IA   C +   + KI+  L K  +V T  G  GG  L   
Sbjct: 8   AVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGGGYTLGCS 67

Query: 70  ADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124
             +I++  + +     +     C      DC +  +  + +V+         +    L Q
Sbjct: 68  PAEISLGVIYRVISTGTLKPHWCSGDPDADCIVKSN--IQTVMDDIFTESEQSVIRHLDQ 125

Query: 125 YSIECLVRN 133
            +IE +++ 
Sbjct: 126 ITIEDVLKK 134


>gi|327398553|ref|YP_004339422.1| BadM/Rrf2 family transcriptional regulator [Hippea maritima DSM
           10411]
 gi|327181182|gb|AEA33363.1| transcriptional regulator, BadM/Rrf2 family [Hippea maritima DSM
           10411]
          Length = 143

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    +  Y +R+L+    +++ P  + +++E   ISE +L ++   L K  +++  +G 
Sbjct: 18  MKFPTKVRYSLRLLIEI-KNSNKPITLREVSEKTHISENYLKQLAAKLEKEKVIKGKKGP 76

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +  P    T+ +++        +A C       C L+  C    +  +       
Sbjct: 77  NGGYTILNP--DFTLKELIDIFTGGVKLAPCMDDD-YRCELMDICKARDIWSQLNKDIDK 133

Query: 121 VLTQYSIEC 129
           +     ++ 
Sbjct: 134 LFLSVKLKD 142


>gi|323341640|ref|ZP_08081873.1| iron-sulfur cluster assembly transcription regulator IscR
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464065|gb|EFY09258.1| iron-sulfur cluster assembly transcription regulator IscR
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 141

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ RT YGI  + Y  I++     +  IAE   IS+++L ++   L +A +V+ V+G 
Sbjct: 1   MKLSARTRYGIAAMTYMHINDQELTTLVNIAEHLNISKIYLEQVFSSLKQANLVDAVKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L   + +  + +++ A E S F          D  ++ +   T +      A  +
Sbjct: 61  AGGYYL--KSKECNMFNILNALEPSLFE---KTPASTDDSIINAALCTHLYTPIDAALRE 115

Query: 121 VLTQYSI---ECLVRNRSS 136
            L    +     L++N S 
Sbjct: 116 TLKGIKLKEIAELIKNESG 134


>gi|116628074|ref|YP_820693.1| Rrf2 family protein [Streptococcus thermophilus LMD-9]
 gi|116101351|gb|ABJ66497.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
           thermophilus LMD-9]
          Length = 149

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMARSVGVNPVIIRKTLSQLKKADLIFVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  GG  L    ++I +L V +A +    S  +     +    CP+  +  +  +L ++L
Sbjct: 61  G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117

Query: 116 N----AFFDVLTQYSIECLVRNRSS 136
                A    L + ++  ++++  +
Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142


>gi|163734987|ref|ZP_02142424.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           litoralis Och 149]
 gi|161391769|gb|EDQ16101.1| transcriptional regulator, rrf2 family, putative [Roseobacter
           litoralis Och 149]
          Length = 140

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    +  L + A         + IAE    + + + ++L  L +AG++ + +G 
Sbjct: 1   MKRNSRLSLALHTLGHMAGDPAGVRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG RL R   +IT+ DV  A +ES             C +       + SVL     + 
Sbjct: 61  AGGWRLAREPHEITLADVYLALDESLVATG-EQEVASSCSVENILQRKVASVLEDVERSL 119

Query: 119 FDVLTQYSIECL 130
            + L   +I  +
Sbjct: 120 VERLAATTIAEV 131


>gi|332367121|gb|EGJ44857.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1059]
          Length = 170

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 81  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157


>gi|55821356|ref|YP_139798.1| Rrf2 family protein [Streptococcus thermophilus LMG 18311]
 gi|55823278|ref|YP_141719.1| Rrf2 family protein [Streptococcus thermophilus CNRZ1066]
 gi|55737341|gb|AAV60983.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus
           thermophilus LMG 18311]
 gi|55739263|gb|AAV62904.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus
           thermophilus CNRZ1066]
 gi|312278675|gb|ADQ63332.1| Transcriptional regulator, BadM/Rrf2 family [Streptococcus
           thermophilus ND03]
          Length = 149

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  GG  L    ++I +L V +A +    S  +     +    CP+  +  +  +L ++L
Sbjct: 61  G-SGGSTLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117

Query: 116 N----AFFDVLTQYSIECLVRNRSS 136
                A    L + ++  ++++  +
Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKA 142


>gi|172057569|ref|YP_001814029.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171990090|gb|ACB61012.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 138

 Score = 95.4 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    + +L   A H D       IA +   + + + +++  L +AG++ TV G+ G
Sbjct: 2   INSRLAVSVHILALIATHPDQALSSDYIAGSVNTNPVVIRRLIGSLRQAGLLSTVAGKSG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
              L +    IT+L + +A E    +          CP+       L     +A  A   
Sbjct: 62  -ATLTKDPQDITLLMIYRAVEPKETLFSMHEQPNPACPVGRDIQSTLNQSFTRAQQALEA 120

Query: 121 VLTQYSIECLVRN 133
            L   ++  ++  
Sbjct: 121 ELGTETLADILHR 133


>gi|90021696|ref|YP_527523.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89951296|gb|ABD81311.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
           degradans 2-40]
          Length = 138

 Score = 95.4 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L + A  +D P   +QIA+    + + + + +  L + G VE+ +GR GG  + RP 
Sbjct: 11  LHILAHLAT-SDEPVTSTQIAKFQSTNPVVVRRTMGLLREHGYVESTKGRNGGWAISRPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
             IT+LD+ +A  ES             CP+  S    L +V+ +          + +++
Sbjct: 70  SDITLLDIHRAFGESSLFTIGLTDEHAHCPIEKSINESLAAVMNETEALLLKRFGEITLD 129

Query: 129 CLVRN 133
            L + 
Sbjct: 130 ALYKQ 134


>gi|327460982|gb|EGF07315.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1057]
          Length = 170

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 81  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157


>gi|257460830|ref|ZP_05625931.1| transcriptional regulator family protein [Campylobacter gracilis
           RM3268]
 gi|257442161|gb|EEV17303.1| transcriptional regulator family protein [Campylobacter gracilis
           RM3268]
          Length = 136

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +    + +++  A   +       +A +  I+     K++  L  A +V T  G 
Sbjct: 1   MQVGIKFSLAVHIMLCVAYFREEKVTGDFVAASSGINPAIARKLISQLKNAALVLTTAGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
            GG+ L R A  IT+LD+ +A  E   +          CP+ G     L     +  N F
Sbjct: 61  -GGITLARDARLITLLDIYEAVSEEDAMFRLHKGSPSACPVGGKIEAVLAPRFARIQNDF 119

Query: 119 FDVLTQYSIECLVRN 133
              L+  S+  L+ +
Sbjct: 120 KKSLSSVSLADLLSD 134


>gi|262066052|ref|ZP_06025664.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291380302|gb|EFE87820.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 144

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        NDY      +A +   + + + KIL  L  AG++   RG
Sbjct: 1   MQISSRFTIALHIFTCVETFKNDYKITSDFLARSINTNPVIIRKILTQLKNAGLITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             GG+   RP  +I+  DV +A E  E+  +    ++    CP+  +  + ++L      
Sbjct: 61  -TGGISPTRPLKEISFYDVYQAIEPVENGDLFNFHSNPNPQCPVGKN--IHALLDDKLKT 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIF 141
              A  + + +Y+++ L   R  ++++ 
Sbjct: 118 IQLAMENEMKKYTLDDL---RIGMQELL 142


>gi|325690774|gb|EGD32775.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK115]
 gi|332358975|gb|EGJ36796.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK49]
          Length = 169

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 81  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157


>gi|86605908|ref|YP_474671.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554450|gb|ABC99408.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
          Length = 146

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H+    +I +IA    I + +L ++L  L + G+V + RG +GG  L RP  QI++LD++
Sbjct: 22  HDGRVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGAKGGYSLARPPWQISLLDII 81

Query: 80  KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           +A E    +         D        L    + A  A   +L + +++ L  
Sbjct: 82  QAIEGE-DLTRPRDLPSGDLSPERQ-VLWQAWQDAQAAAVGILQKTTLQDLCD 132


>gi|227893626|ref|ZP_04011431.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864486|gb|EEJ71907.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
          Length = 154

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+    P     IA +   S + + K++  L KAG++ET  G
Sbjct: 1   MKVSTRFSDAIHLLAFIHIYKGQIPLSSENIAGSIETSPVMVRKLMSELRKAGLIETKHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                +L +P DQI++LDV  A E+   + E        C + G+    L     +A  A
Sbjct: 61  TP-DPKLAKPTDQISLLDVYLAVEKDKPLFEIDHKTNPQCIVGGNIQATLKEYYHQAEVA 119

Query: 118 FFDVLTQYSIECLVR 132
               L    +  +V 
Sbjct: 120 AKAKLNNIKLSDVVD 134


>gi|26553766|ref|NP_757700.1| hypothetical protein MYPE3120 [Mycoplasma penetrans HF-2]
 gi|26453773|dbj|BAC44104.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 143

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I + +       D+      +A +  ++ + + KIL  L  +G++E  RG
Sbjct: 1   MQISSRFTIAIHIFVCIKTFEEDHKITSEFLASSTNVNPVIIRKILLQLKSSGLIEVQRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             GG  + +P DQI+ LD+ KA E  E   +     +   +CP+  +  + ++L      
Sbjct: 61  -SGGSSIAKPLDQISFLDIYKAVECIEKGKLFHFHENPNQECPVGKN--IHNILDDKLEQ 117

Query: 114 ALNAFFDVLTQYSIECLVRN 133
              A  D L + +++ ++ +
Sbjct: 118 VQKALEDELKKITLDQVIND 137


>gi|153812075|ref|ZP_01964743.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
 gi|149831730|gb|EDM86816.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
          Length = 149

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + V++  AI+ +     + IAE+   +  F+ +++  L KA ++ +V G 
Sbjct: 1   MKYSTKLSDTVHVMVLIAINQEKSLSSASIAESVHTNPGFVRQLMLKLKKAELMTSVAG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PA+QIT+LD+ KA E    +         DC +  +    L     +     
Sbjct: 60  HARPSLSKPAEQITLLDIYKAVEGDKPLLHLDTHTNPDCGVGINIQLSLQGFYNEIQKDA 119

Query: 119 FDVLTQYSIECLVR---NRSSIKKIFN 142
            + +   +++ ++     R+SI+    
Sbjct: 120 EEKMNTITLQDIIDTYYQRTSIENNLQ 146


>gi|167464005|ref|ZP_02329094.1| transcriptional regulator [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 76

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 38/66 (57%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
            +  IAE   +SE +L +++ PL  AG+V+++RG  GG  L RPA+QIT   +++  E 
Sbjct: 5  TSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTGQIIRVLEG 64

Query: 85 SFFVAE 90
               +
Sbjct: 65 PISPVD 70


>gi|223040323|ref|ZP_03610599.1| RRF2 family protein [Campylobacter rectus RM3267]
 gi|222878392|gb|EEF13497.1| RRF2 family protein [Campylobacter rectus RM3267]
          Length = 138

 Score = 95.0 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + ++    I +L+ C    D  N    +A     + + +  I++ L  A ++    G 
Sbjct: 1   MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTVGTNPVIVRNIIRLLKSANLINVSAG- 59

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
            GG  L +  DQIT+ D+  A  E    + +   +    CPL G     LT     A  A
Sbjct: 60  TGGASLAKKPDQITLFDIFSAVNEGENGIFKIHKNSPPPCPLGGRIEALLTPKFASAQRA 119

Query: 118 FFDVLTQYSIECLVRN 133
            FD L   +++ L+  
Sbjct: 120 MFDSLAGVNLQNLLDE 135


>gi|300811188|ref|ZP_07091698.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497832|gb|EFK32844.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 148

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T   I +L+  A           +A +   +  ++ K++  L   GI+ + RG+
Sbjct: 1   MRDTKYT-VAIHILVMLATSP-RDLNSDDLARSVGTNASYIRKVMALLKDHGIIASQRGK 58

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
            G  RL +  + +++L++ +A       + +   +    CP+  +    +   L +A   
Sbjct: 59  SG-TRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
             + L + S+  ++       +  +AG
Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144


>gi|294499841|ref|YP_003563541.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294349778|gb|ADE70107.1| Transcriptional regulator, probably rrf2 family [Bacillus
           megaterium QM B1551]
          Length = 139

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++ A   D+      IA   C +   + KI+  L K  +V T  G  GG  L   
Sbjct: 8   AVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGGGYTLGCS 67

Query: 70  ADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124
             +I++  + +     +     C      DC +  +  + +V+         +    L Q
Sbjct: 68  PAEISLGLIYRVISTGTLKPHWCSGDPDADCIVKSN--IQTVMDDIFTESEQSVIRHLDQ 125

Query: 125 YSIECLVRN 133
            +IE +++ 
Sbjct: 126 ITIEDVLKK 134


>gi|296125727|ref|YP_003632979.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
           DSM 12563]
 gi|296017543|gb|ADG70780.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
           DSM 12563]
          Length = 140

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    +  L+      D     + I+E+  ++ + +  IL  L KA I+   RG 
Sbjct: 1   MKISSRFTIAVHTLLCILEFKDEKITSNFISESVQVNPVIIRNILIQLQKADIITVKRG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            GG+ L +  + IT+LD+  A E  +   +     +    CP+ G+    L   L     
Sbjct: 60  TGGISLNKKTENITLLDIFNAVESLDEGKLFSFHENPNKKCPVGGNINKILQPKLDSVQY 119

Query: 117 AFFDVLTQYSIECL 130
           A    L + +++ +
Sbjct: 120 AMEKELKKTTLKDI 133


>gi|323351192|ref|ZP_08086848.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           VMC66]
 gi|322122416|gb|EFX94127.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           VMC66]
          Length = 169

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 21  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 80

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 81  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157


>gi|298248776|ref|ZP_06972581.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551435|gb|EFH85301.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
           racemifer DSM 44963]
          Length = 164

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 1   MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M         + +L  M  A          QIA +   + +F+ +IL  L KA +V    
Sbjct: 1   MRANTHFTVALHILTWMALASQQQEIMTSDQIAGSVNTNPVFIRRILGRLHKAHLVNVHH 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G   G  L +P ++I++L+V +A E+              C +       L      A  
Sbjct: 61  GTSAGWTLAQPPEKISLLEVYQAVEQEPLFELHHTPPNQGCVVGKGIQPALKRFYSDAEA 120

Query: 117 AFFDVLTQYSIECLVRN 133
           A      Q S+  ++  
Sbjct: 121 AMQQQFAQVSVADVLDE 137


>gi|171778450|ref|ZP_02919608.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282851|gb|EDT48275.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 149

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112
           G  GG  L    ++I +L V +A +    S  +     +    CP+  +  +  +L    
Sbjct: 61  G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117

Query: 113 -KALNAFFDVLTQYSIECLVRN 133
                A    L + ++  ++++
Sbjct: 118 GDVQMAMEKELEKKTLAGILKD 139


>gi|296126632|ref|YP_003633884.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
           DSM 12563]
 gi|296018448|gb|ADG71685.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
           DSM 12563]
          Length = 149

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++ +   +   +Y +I       +  IAE   +S   L K+LQ LVKAG + + +G  G
Sbjct: 4   ISEASAIALHSAVYISIK--EFASLKDIAERFDVSSNHLSKVLQALVKAGYLTSSKGPAG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G ++    +  + L++ +  E   +   C    K D     +C +  ++      F + +
Sbjct: 62  GFKIAEGKENTSFLEIYETIEGKNWQRSCLFHSKCD-KYCSNCIMGDLVNDINRKFKNYM 120

Query: 123 TQYSIEC 129
             ++I+ 
Sbjct: 121 ESHTIKD 127


>gi|154484942|ref|ZP_02027390.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
           27560]
 gi|149733895|gb|EDM50014.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
           27560]
          Length = 143

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        NDY      +A +  ++ + + KIL  L  A ++E  RG
Sbjct: 1   MQISSRFTVAVHIFACIKTFENDYKITSDFLAGSTNVNPVIIRKILGQLKGADLIEVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG ++ RP ++IT+LDV KA E  E   +     +    CP+  S  + +VL     +
Sbjct: 61  -TGGAKITRPLNEITLLDVYKAVECVEGGELFHFHENPNPQCPVGRS--IHTVLDGKLEQ 117

Query: 114 ALNAFFDVLTQYSIECL 130
              A    L   ++E +
Sbjct: 118 VQKAMEKELNSITLEDV 134


>gi|324991473|gb|EGC23406.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK353]
          Length = 164

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 15  MQISSRFTIATHMLIVLALEGKKQKLTSDILASSVGVNPVIIRKTLSQLKNAGMITVARG 74

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 75  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 131

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 132 AIQAAMEAELAQTSLDEVVA 151


>gi|306833586|ref|ZP_07466713.1| transcriptional regulator superfamily protein [Streptococcus bovis
           ATCC 700338]
 gi|304424356|gb|EFM27495.1| transcriptional regulator superfamily protein [Streptococcus bovis
           ATCC 700338]
          Length = 159

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +  + VL   A+  ++ P +   +++   +S+ +L KIL  L +AG++++   
Sbjct: 1   MKLNKSFEQAVYVLTMLALQENHTPVKSRVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
           + GG +L +    IT+ DV  A +    V E    H        +  +  V  K      
Sbjct: 61  KVGGYQLAQSVTTITLKDVFFALDLQANVIE--FKHMAHHIYDDTSHVKQVENKVQQTLE 118

Query: 117 ----AFFDVLTQYSIECLVRNRS 135
               AF+  L   +I  L++  +
Sbjct: 119 KGLFAFYHELDTLTIADLLQEEA 141


>gi|222053320|ref|YP_002535682.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
 gi|221562609|gb|ACM18581.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
          Length = 146

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K +  G+  ++  A   +     + IAE   IS   L K+++ LV  G+V+ +RG 
Sbjct: 1   MKLNKASLLGLIAVLELADDPEQQLSTTDIAEKYDISTHHLAKVMRNLVHKGVVQAMRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG R     ++ T+LD+++  E      +     K   P++    L S+  +  +    
Sbjct: 61  GGGYRFAGNPNRTTLLDIIQLFETMESELDLPHWSKAADPIISE--LQSITNEIDDVTKA 118

Query: 121 VLTQYSIECLVRN 133
           +L   ++   ++N
Sbjct: 119 ILETITLSAALKN 131


>gi|116511357|ref|YP_808573.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116107011|gb|ABJ72151.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 156

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  A +  +       +A    +S  +L KI++ LV  G++ +  G
Sbjct: 1   MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
           + GG  L +    I+  DV  A E    + +     +     +      C +T+ L +  
Sbjct: 61  KNGGFSLNKDLLDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N     L+  S+  +   
Sbjct: 121 NTLVRTLSNVSLAQVADE 138


>gi|315222502|ref|ZP_07864391.1| Rrf2 family protein [Streptococcus anginosus F0211]
 gi|315188188|gb|EFU21914.1| Rrf2 family protein [Streptococcus anginosus F0211]
          Length = 149

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L   A+   ++      +A++  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLTVIALECQEHKVTSDFLADSVGVNPVIIRKTLSQLKSAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             GG  + +    IT+LDV +A E   +S  +          CP+  +    L   L + 
Sbjct: 61  -TGGAVIMKDLKDITLLDVYQAVECLGKSGQLFSFHEHPNPSCPIGRNIHLVLDDKLAEI 119

Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
             A    L++ S+  +V + +  I+K
Sbjct: 120 QAAMEKELSKTSLADVVASAQEEIQK 145


>gi|319946559|ref|ZP_08020794.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
           700641]
 gi|319747305|gb|EFV99563.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
           700641]
          Length = 149

 Score = 94.6 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R   G  VL+  A+  D        IA +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIGTHVLVMIALKGDCTKVTSDMIAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +  + I++LD+ +A E   ++  +          CP+  S  +  VL     
Sbjct: 61  -TGGAEMAKELEDISLLDIYQAVECLGKTGQLFGFHEHPNPACPIGNS--IHGVLDGKLE 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKI 140
           K   A    + Q S++ +V       ++
Sbjct: 118 KIQLAMEKEMAQTSLKEVVEQTKKQMEL 145


>gi|322374098|ref|ZP_08048632.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
           C150]
 gi|321277064|gb|EFX54135.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
           C150]
          Length = 159

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  I VL+      +        ++E   +S+ +L KI++ L   G+V++VRG
Sbjct: 1   MRLSSGWEQSIYVLLMLDQLPEGKYINSVFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GG+ L +P  +I+  DV  A E    + E            +      C +T+ L   
Sbjct: 61  KNGGIALSKPLSKISFYDVFVAIEGKNRIFESQNLLKKFLGDEEGSRAKKCVVTNSLDVI 120

Query: 115 LNAFFDVLTQYSIECLV 131
            N     L   ++  + 
Sbjct: 121 ENTLVSTLISITLSQVA 137


>gi|322388749|ref|ZP_08062346.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
 gi|321140368|gb|EFX35876.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
          Length = 143

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +AE+   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 3   TKFSVSLHILTMISESKET-LSSQALAESVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120
           +L +   ++T+L++  AT+E     +     +   DCP+       ++ +   A      
Sbjct: 61  QLSKSPKEVTLLEIYFATQEVSHISLFPVHQNSNPDCPVGKHIQAAVSPLFASAEAQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L Q ++E ++ N
Sbjct: 121 ELAQQTLEDVINN 133


>gi|116669822|ref|YP_830755.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609931|gb|ABK02655.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
          Length = 136

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
              +++AE   +   +L K LQ LV+AGI+ +V G RGG +L R A+ IT+LDVV A E 
Sbjct: 1   MNSARLAELYQLPAAYLNKQLQALVRAGILYSVSGPRGGFQLARGAETITVLDVVLAIEG 60

Query: 85  SFFVAEC---FASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                 C    A+     P      SC ++  +R+A  A+   L++ +I  +  +
Sbjct: 61  PDPAFRCESILANAPGADPGEDYLRSCLVSQTMRQAELAWRQTLSRQTIAGIAAS 115


>gi|300932585|ref|ZP_07147841.1| transcriptional regulator, BadM/Rrf2 family protein
           [Corynebacterium resistens DSM 45100]
          Length = 133

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
           +  S IA      +  + K++  L + G+V + RGR GG+ L   A    +  +++  E 
Sbjct: 20  HTSSSIAHNIGAPQTHVAKVVSKLAELGMVNSTRGRTGGIVLTPEARTKKLGTLMQELEG 79

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
                         CP    C L  VL+ A   FFD L + +I  +V    +  K+
Sbjct: 80  PRLSN---YRVHDPCPFDPECQLHGVLQLAAQQFFDHLDKTTINDIVPEFPAKAKL 132


>gi|24215428|ref|NP_712909.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45657165|ref|YP_001251.1| hypothetical protein LIC11283 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196551|gb|AAN49927.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|45600403|gb|AAS69888.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 139

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 1/132 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T R    I +L   ++         ++AE+   + + + KIL  L   GIV    G  G
Sbjct: 1   MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNQGIVRNQMGPNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G  L +    I + ++ +A +E  F +     + K  C       L+ V  KA     + 
Sbjct: 61  GYVLAKTPASINLKEIYEAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEEE 120

Query: 122 LTQYSIECLVRN 133
           L    ++ + + 
Sbjct: 121 LGSTDLDSITKE 132


>gi|319938822|ref|ZP_08013186.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
 gi|319811872|gb|EFW08138.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
          Length = 145

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L   A+    +      +A++  ++ + + KIL  L  A ++   RG
Sbjct: 1   MQISSRFTIATHMLTVIALECQKHKVTSDFLADSVGVNPVIIRKILSQLKSADLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
           R GG  + +    IT+LDV +A E   +S  +          CP+  +    L   L + 
Sbjct: 61  R-GGAIIRKDLKDITLLDVYQAVESLGKSGQLFSFHEHPNPSCPIGRNIHFVLDDKLAEI 119

Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
             A    L++ S+  +V + +  IKK
Sbjct: 120 QAAMEKELSKTSLADVVASAQEKIKK 145


>gi|152990511|ref|YP_001356233.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
 gi|151422372|dbj|BAF69876.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
          Length = 138

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 1   MHL-TKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M L + +  Y I  +     H   + P +   IA+   I + FL +IL  L K+GIV+++
Sbjct: 1   MALVSAKGSYAIAAIFVLYEHYNENKPLKTELIAKLGSIPKNFLEQILLDLKKSGIVKSI 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG +GG  L +P  +I ++D++ + E       C   + +         L ++       
Sbjct: 61  RGAKGGYILAKPPKEILLIDIINSVEPECCTGICRTQNPV---------LEALWSDFNKT 111

Query: 118 FFDVLTQ-YSIEC 129
             + L++  +I  
Sbjct: 112 IQNFLSRPITIFD 124


>gi|306819699|ref|ZP_07453360.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552265|gb|EFM40195.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 146

 Score = 94.2 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        +DY      +A +   + + + KIL  L  AG++   RG
Sbjct: 1   MQISSRFTVALHIFTCVDTFKDDYKITSDFLAGSINTNPVIIRKILTQLKNAGLITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN- 116
             GG+   R   +I+  DV +A E  E+  +     S   +CP+  +  + ++L   L  
Sbjct: 61  -TGGITPTRDLKEISFYDVYQAIEPVENGDLFNFHNSPNPNCPVGRN--IHALLDDKLKA 117

Query: 117 ---AFFDVLTQYSIECLVRNRSSIKKIF 141
              A  D + +YSI+ L   RS ++++ 
Sbjct: 118 IQVAMEDEMKKYSIDDL---RSGMQELL 142


>gi|260062075|ref|YP_003195155.1| rrf2 family protein [Robiginitalea biformata HTCC2501]
 gi|88783637|gb|EAR14808.1| rrf2 family protein (putative transcriptional regulator)
           [Robiginitalea biformata HTCC2501]
          Length = 144

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR ++Y A  +       + +IA+A      F  KILQ L + G+V++V+G 
Sbjct: 2   FSKACEYGIRAVVYIAHKSLEGQRVSLKEIADAIDSPVAFTAKILQQLSRNGLVDSVKGA 61

Query: 61  RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +      ++ + D+V   + +     C    K  C     C +     +  +   
Sbjct: 62  SGGFEMSEGRIREVRLADIVSVVDGNRVYEGCGLGLK-KCNEHKPCPVHWEFVEVRDRLK 120

Query: 120 DVLTQYSIECL 130
            +L   SI  +
Sbjct: 121 ALLETTSIHDM 131


>gi|332358706|gb|EGJ36529.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK355]
          Length = 150

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|322382580|ref|ZP_08056458.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153435|gb|EFX45842.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 148

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L       +  L+  +          +IA   C     + KI+  L KAG V+T  G  G
Sbjct: 6   LNSEFTIAVHSLVLLSHLPGQMATSGEIAANVCTHAARIRKIMGMLRKAGYVKTKEGFGG 65

Query: 63  GVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
           G  L    D +T+ D+ + T   S     C       CP+  +    +  +   A     
Sbjct: 66  GFLLNCDPDAVTLADIYRVTSAGSLKPYWCTGDKSQSCPVSSNMQDVMNRLFCDAEKHME 125

Query: 120 DVLTQYSIECLVRN 133
             L   ++  ++  
Sbjct: 126 QYLAGRTLGDVLHE 139


>gi|309799014|ref|ZP_07693270.1| Rrf2 family protein [Streptococcus infantis SK1302]
 gi|308117364|gb|EFO54784.1| Rrf2 family protein [Streptococcus infantis SK1302]
          Length = 145

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQISSRFTIATHMLIIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +  + I++LDV +A E   ++  +     +    CP+  +  +  VL + L 
Sbjct: 61  -TGGAEIIKDLEDISLLDVYQAVECLGKTGQLFSFHDNPNPACPVGSN--IHGVLDEKLQ 117

Query: 117 ----AFFDVLTQYSIECLVRNRSS 136
               A    L+Q S+  +V +  S
Sbjct: 118 KIQLAMEQELSQTSLAQVVADAES 141


>gi|225018040|ref|ZP_03707232.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
           DSM 5476]
 gi|224949186|gb|EEG30395.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
           DSM 5476]
          Length = 153

 Score = 93.9 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    +  L++ +  +D      ++A +   + + + K+L  L KAG++E   G 
Sbjct: 1   MKISSRFTVAVHCLLFISC-SDEKITSEKLAASVNTNPVVIRKVLGKLKKAGLIEVYSG- 58

Query: 61  RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
            GG  L +PA  IT+LD+  A +  +   +        ++C +       L++ L+ A  
Sbjct: 59  TGGAALLKPASSITLLDIFHAADVVDDNQLFS-LHDPNLECAVGKEVLPLLSNPLKTAQQ 117

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L + ++  L+  
Sbjct: 118 ALESSLEKTTLADLLDQ 134


>gi|325694827|gb|EGD36732.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK150]
          Length = 160

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 71  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147


>gi|291519431|emb|CBK74652.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
           fibrisolvens 16/4]
          Length = 144

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + VL+      ND       +A +  ++   + ++LQ L KA IV   RG
Sbjct: 1   MQISSRFTIAVHVLIAIETFKNDNKITSEFLASSANVNPTVIRRLLQQLKKAEIVTVKRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG  + +   +IT+LDV  A E  E+  +     +    CP+  +  +  ++     +
Sbjct: 61  -SGGADIEKSLTEITLLDVYNAVEPVENGQLFHFHENPNELCPVGRN--IHRIMDHRLEE 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
             NA  D + + +I  ++ + + +
Sbjct: 118 IQNAMEDKMRRITIADVMADANKL 141


>gi|226324094|ref|ZP_03799612.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758]
 gi|225207643|gb|EEG89997.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758]
          Length = 135

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ +  Y +RV++  A H D     +++IA    ISE +L  +L+ LVK  +++  RG+ 
Sbjct: 2   ISTKGRYALRVMIDLAQHKDEEYVPLNEIAIRQEISEKYLEIVLKILVKKKLLKGRRGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R + + TI ++++  E +     C       C     C    + +K      D 
Sbjct: 62  GGYQLTRESSEYTIGEILELAEGNLATVACLVPGAEVCSREEQCITLPLWKKFDGMVHDF 121

Query: 122 LTQYSIECLVRNR 134
             + ++E ++   
Sbjct: 122 FYEITLEDVLNGN 134


>gi|56963162|ref|YP_174890.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909402|dbj|BAD63929.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 148

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 2/127 (1%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y ++ L++ +         ++IAE  C       ++L  LVKAGIVE   GR GG  L R
Sbjct: 17  YALQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRR 76

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
             + I+  DV +A +    +           P         T+V+ ++      VL +++
Sbjct: 77  KPEDISFADVYRAIQVVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVLERHT 136

Query: 127 IECLVRN 133
           I  L++ 
Sbjct: 137 IADLIKK 143


>gi|52082199|ref|YP_080990.1| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787590|ref|YP_093419.1| YwnA [Bacillus licheniformis ATCC 14580]
 gi|319648073|ref|ZP_08002290.1| YwnA protein [Bacillus sp. BT1B_CT2]
 gi|52005410|gb|AAU25352.1| putative transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|52350092|gb|AAU42726.1| YwnA [Bacillus licheniformis ATCC 14580]
 gi|317389708|gb|EFV70518.1| YwnA protein [Bacillus sp. BT1B_CT2]
          Length = 133

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I +L   A +         IA +   + + + +++  L KAGI+ +  G  G   L R 
Sbjct: 9   AIHILSLIAANPRE--SSEMIAGSVNTNPVVIRRMISQLKKAGILTSRPGVAG-ASLKRD 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127
            + I++LD+ +A +    +         +CP+      T          A  + L   S+
Sbjct: 66  PEDISLLDIYRAVQPHEELFAIHDKPNPNCPVGRQIQTTLDQTFHSVQQAMENELASKSL 125

Query: 128 ECLV 131
           + ++
Sbjct: 126 KDVL 129


>gi|295835500|ref|ZP_06822433.1| Rrf2 family protein [Streptomyces sp. SPB74]
 gi|197698596|gb|EDY45529.1| Rrf2 family protein [Streptomyces sp. SPB74]
          Length = 156

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L++  +H           QIA +   + + + ++L  + +AG+V + RG   G RL
Sbjct: 10  AAHALVWIELHCRAGHEVATSEQIAGSVNTNPVVIRRLLGRMREAGLVCSRRGSDAGWRL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVL 122
            RP + +T+ DV +A E S       A    +CP+   CG+   +R    +A  A    L
Sbjct: 70  LRPLESMTLRDVYEAIEPSPLFELHRAEPNPECPVG--CGIKPAMRTVYDRAEEAVRAEL 127

Query: 123 TQYSIECLVRN 133
            + +++ ++R+
Sbjct: 128 GRVTLDEVLRD 138


>gi|325696155|gb|EGD38046.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK160]
          Length = 149

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|268609517|ref|ZP_06143244.1| hypothetical protein RflaF_08475 [Ruminococcus flavefaciens FD-1]
          Length = 145

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +    + +L    I           ++ +  ++ + +  +L  L   GIVET +G
Sbjct: 1   MQITSKFTVAVHILTCIDIFGSQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             GG  L +  D+IT+ D+ KA +  +   +     +   +CP+  +  +   +      
Sbjct: 61  -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNAECPVGRN--IHKAMDDRLEA 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A  A  + L   ++  +V +   I
Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141


>gi|288905395|ref|YP_003430617.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306831475|ref|ZP_07464633.1| transcriptional regulator superfamily protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978384|ref|YP_004288100.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732121|emb|CBI13686.1| putative transcriptional regulator [Streptococcus gallolyticus
           UCN34]
 gi|304426260|gb|EFM29374.1| transcriptional regulator superfamily protein [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178312|emb|CBZ48356.1| transcriptional regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 159

 Score = 93.9 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K  +  + VL   A+  ++ P +   +++   +S+ +L KIL  L +AG++++   
Sbjct: 1   MKLNKSFEQAVYVLTMLALQENHTPVKSHVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
           + GG +L +    IT+ DV  A +    V E    H        +  +  V  K      
Sbjct: 61  KVGGYQLAQSVTTITLKDVFFALDLQANVIE--FKHMAHHIYDDTSHVKQVENKVQQTLE 118

Query: 117 ----AFFDVLTQYSIECLVRNRS 135
               AF+  L   +I  L++  +
Sbjct: 119 KGLFAFYHELDTLTIADLLQEEA 141


>gi|324993824|gb|EGC25743.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK405]
 gi|324994855|gb|EGC26768.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK678]
 gi|327474699|gb|EGF20104.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK408]
 gi|328946722|gb|EGG40860.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1087]
          Length = 159

 Score = 93.9 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 71  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147


>gi|332653243|ref|ZP_08418988.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
 gi|332518389|gb|EGJ47992.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
          Length = 147

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L + ++        ++IAE+   +  ++ +++  L  AGI+ + +G 
Sbjct: 1   MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAALKSAGIITSSQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
           +    L R   +IT+LDV +A E +  +         +C   +     +    ++   A 
Sbjct: 60  QANAELTRQPGEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQRAA 119

Query: 119 FDVLTQYSIECLVRN 133
              +   +++ ++  
Sbjct: 120 EQKMQTITLQDIIDR 134


>gi|291545297|emb|CBL18406.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
           18P13]
          Length = 147

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +L+      D        +A +  +  + + K+L  L  AG+VE  RG
Sbjct: 1   MQISSRFTLAVHILLCLDTFRDQYKVTSEFLAGSTNVHPVMIRKLLGQLKTAGLVEVTRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113
             GG  + +P +QIT+LDV +A +  ++  +          CP+  +  +  V    L +
Sbjct: 61  -SGGASIAKPLEQITLLDVYRAVDSVDADSLFHFHEKPNQLCPVGRN--VHGVLDPCLAR 117

Query: 114 ALNAFFDVLTQYSIECL 130
           A +A    L   ++  +
Sbjct: 118 AQHAMERELQSVTMAQV 134


>gi|153811085|ref|ZP_01963753.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
 gi|149832973|gb|EDM88056.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
          Length = 145

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L++ A+ +D     ++IAE+   +  ++ +++  L  AGI+   +G 
Sbjct: 1   MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIIVNTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L + AD+I + D+ +A E    +         DC +  +    +     +  N  
Sbjct: 60  HANAALAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119

Query: 119 FDVLTQYSIECLVRNRS-SIKKIFN 142
              +   +++ ++      I+K+ N
Sbjct: 120 DKKMKSITLQDIIDRYYFKIRKVKN 144


>gi|146300166|ref|YP_001194757.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154584|gb|ABQ05438.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 149

 Score = 93.5 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNR--ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  ++ A  +    R  I  +A+     E F  KI+Q L K GI+ + +G 
Sbjct: 2   FSKACEYGIRASIFIATKSSKGIRVGIKDVAKEIDSPEPFTAKIMQILTKNGIIHSAKGV 61

Query: 61  RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + + A   I ++ +V A +       C    K +C     C +    +K      
Sbjct: 62  GGGFEVSKEALKSIKLIQIVDAIDGDKIYRGCGIGLK-ECSEEHPCPVHFEFKKIRGLLL 120

Query: 120 DVLTQYSIECLV 131
            +L+  ++E L 
Sbjct: 121 QMLSTTTLEQLA 132


>gi|257870322|ref|ZP_05649975.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804486|gb|EEV33308.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 141

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  +         +IA++   +  ++ +I+  L  AG++E+ RG+
Sbjct: 1   MKYSTKYSDAIHILAYIEMLKGTDLSSDRIAQSVETNPAYVRRIMSDLRTAGLIESQRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALN 116
               +L +  ++IT+LD+  + E+   +         +C + GS  +  VL +       
Sbjct: 61  A-EPKLLKKPEEITLLDIYSSVEKDQRLLHIDKKTNPNCLIGGS--IQEVLDETYERLQK 117

Query: 117 AFFDVLTQYSIECLVRN 133
                + Q ++  ++  
Sbjct: 118 KIELEMQQITLADIIDK 134


>gi|194289994|ref|YP_002005901.1| transcriptional regulator hth rrf2-type DNA-binding domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193223829|emb|CAQ69836.1| putative transcriptional regulator, HTH rrf2-type DNA-binding
           domain [Cupriavidus taiwanensis LMG 19424]
          Length = 144

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L +AG+V T  G 
Sbjct: 1   MSTSSRFAVAVHILTLLASSAE-PLPSSLIAGSVGTNPALIRRLVGQLAEAGLVATTMGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA  IT+L+V +  E +  +A   ++    C +       L  V  +A  A 
Sbjct: 60  TGGATLARPAASITLLEVFRVVETTALIALHQSAPNPACLVGREITGALRKVADRAQAAM 119

Query: 119 FDVLTQYSIECLVRN 133
            + L   +I  ++ +
Sbjct: 120 DETLAGITIASMLAD 134


>gi|322387140|ref|ZP_08060750.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
 gi|321141669|gb|EFX37164.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
           700779]
          Length = 143

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQISSRFTIATHMLVIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKADLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +  + I++LD+ +A E   ++  +     +   DCP+  +  +  VL +   
Sbjct: 61  -TGGAEIIKELEDISLLDIYQAVECLGKTGQLFSFHDNPNPDCPVGAN--IHGVLDEKLD 117

Query: 114 -ALNAFFDVLTQYSIECLVRNRSS 136
               A  + L+Q S+  +V +  +
Sbjct: 118 KIQEAMEEELSQTSLARVVADAEA 141


>gi|290579608|ref|YP_003484000.1| hypothetical protein SmuNN2025_0082 [Streptococcus mutans NN2025]
 gi|254996507|dbj|BAH87108.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 157

 Score = 93.5 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  + VL+  +   D        ++     S  +L KI++ LV  G++ ++ G
Sbjct: 1   MKLSSGWEQSVYVLLILSQLPDSKTINSQSLSLRLGTSHSYLKKIIKLLVNEGLITSIPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GG  L +  + IT  DV  A E    +            + +      C +T  L   
Sbjct: 61  KYGGFSLAKSLEDITFYDVFIAVEGRGKIFASQQLLKKFLGENEGKKAQKCAVTDSLDII 120

Query: 115 LNAFFDVLTQYSIECL 130
            N     L+  S+  +
Sbjct: 121 ENTLVTTLSSISLAQV 136


>gi|323137246|ref|ZP_08072325.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
 gi|322397604|gb|EFY00127.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
           49242]
          Length = 147

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 1   MHL-TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L  +   + +   +  A+H    P    ++A    +    L  +LQ LV+AGI+++VR
Sbjct: 1   MRLLPRSARFALMAALDVALHARGRPVPSKELAARHDLPPRRLETLLQALVRAGILKSVR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           G  GG  L R   ++ + ++V+               +   P + +  L  V+ +A  + 
Sbjct: 61  GPAGGYELARERRRLCVGEIVRV------ALRAEEEDENQSPALLAAVLEPVIAQAEESA 114

Query: 119 FDVLTQYSIECL 130
              L + ++E L
Sbjct: 115 LARLDEITLEDL 126


>gi|225374493|ref|ZP_03751714.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
           16841]
 gi|225213731|gb|EEG96085.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
           16841]
          Length = 139

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+ TDY +R+L   A+ + + + +  I E   + + F +KI+  L K G+V++VRG 
Sbjct: 1   MIITRETDYALRILR--ALSDGHRHTMKNICEEAVVPQQFAYKIIAKLAKGGVVDSVRGS 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKALN 116
            GG  L     ++++  +++   +   +  C AS   +C     C     +   L +   
Sbjct: 59  GGGCLLDCDLRELSLYRLLEIMGDDDRINACMASE-YECSWEKKCRKHCEIRRKLCRIQM 117

Query: 117 AFFDVLTQYSI 127
                L Q+S+
Sbjct: 118 QLQKELDQHSV 128


>gi|317056951|ref|YP_004105418.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
 gi|315449220|gb|ADU22784.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
          Length = 145

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +    + +L    + +         ++ +  ++ + +  +L  L  AGIVET +G
Sbjct: 1   MQITSKFTAAVHILTCIDVFDGQMRVTSDFLSGSTGVNAVIVRNVLGQLRTAGIVETRQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             GG  L +  D+IT+ D+ KA +  +   +     +   DCP+  +  +   + +    
Sbjct: 61  -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDERLEA 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A  A  + L   ++  +V +   +
Sbjct: 118 AQAALENELKSTTLAQVVSDTRKL 141


>gi|28377198|ref|NP_784090.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254555410|ref|YP_003061827.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300766930|ref|ZP_07076843.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308179412|ref|YP_003923540.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270029|emb|CAD62929.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254044337|gb|ACT61130.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300495468|gb|EFK30623.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308044903|gb|ADN97446.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 146

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ R    I +L Y  I+ D       IA +   S + + +++  L +AG++ T  G 
Sbjct: 1   MRVSTRFSDSIHLLAYIKIYADTKLTSDAIARSIETSPVVVRRLMSKLRQAGLITTTPG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +P  QI++L V  A E    +         DC + G+    L    + A  A 
Sbjct: 60  TAQPALAKPLSQISLLSVFYAIEGDKPLLAVDPKTNPDCIVGGNIQTVLKQYYQDAQTAA 119

Query: 119 FDVLTQYSIECLVRN 133
              L + S++ +V N
Sbjct: 120 EARLAKTSLQDVVDN 134


>gi|291279997|ref|YP_003496832.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
           SSM1]
 gi|290754699|dbj|BAI81076.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
           SSM1]
          Length = 140

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T+  DY IR++ Y A  ++   +I +I +   +   F+ KI+  L K  I++T  G+ G
Sbjct: 5   ITREVDYAIRIVAYLAGKDER-IKIDEICKKLYLKRPFVIKIIHKLNKCHILKTYTGKNG 63

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G+ L     ++++ D+ +       +  C       C L   C +T+       +  + L
Sbjct: 64  GILLAMDVSELSLYDIFQCLGFKTTINIC-TEKPEHCELNPICNITTFFAGIEKSLVNKL 122

Query: 123 TQYSIECLVRNRSSIKKI 140
               I+  + N   + K+
Sbjct: 123 KNAKIKDFIFNDEDLNKM 140


>gi|315651167|ref|ZP_07904198.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
 gi|315486565|gb|EFU76916.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
          Length = 130

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +RV+   A+  +     ++IA+   + +   +K+L  L+K+ +V ++RG 
Sbjct: 1   MLITREMDYAVRVVR--ALKGNTKISATEIAKKEHLPQAITYKVLNSLLKSKLVGSMRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
            GG  L       T+ D+  A  E   + EC      DC     G C L     +  N+ 
Sbjct: 59  NGGYYLKCDLTCTTLYDICVALGEDMSITECI-RDGYDCVNNRCGECTLNREFNRIQNSL 117

Query: 119 FDVLTQYSIECLV 131
              L   +++ L+
Sbjct: 118 NRELQLTTLDKLL 130


>gi|81429434|ref|YP_396435.1| hypothetical protein LSA1822 [Lactobacillus sakei subsp. sakei 23K]
 gi|78611077|emb|CAI56130.1| Hypothetical protein LCA_1822 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 171

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M LT+  +    +++  A    ++      I      S+ +L KI++ LV AG+V++V G
Sbjct: 1   MQLTRAFEQATCIIVLLATQDPEHTISSEVIHHRLGGSQTYLRKIIRKLVVAGLVKSVSG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFV------AECFASHKIDCPLVGSCGLTSVLRK 113
             GG  L RPA +++I DVV ATE            +   +        G+  + +   K
Sbjct: 61  NSGGFTLARPASEVSIYDVVLATEGQIKSYPDTGKLDTVFNDFQPVAKQGTLIINAAFHK 120

Query: 114 ALNAFFDVLTQYSIECLV 131
           A   + + L + ++  L+
Sbjct: 121 ADMLWANELKKQTVSGLI 138


>gi|86134276|ref|ZP_01052858.1| transcriptional regulator [Polaribacter sp. MED152]
 gi|85821139|gb|EAQ42286.1| transcriptional regulator [Polaribacter sp. MED152]
          Length = 142

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+K+T YGI+ L Y A      P  I+ I+++  IS  FL  IL  L K G++ + +G+ 
Sbjct: 2   LSKKTKYGIKALTYLAKQEHKMPIAIATISKSENISLKFLESILLTLRKNGLLGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  D+I +  +++  E    +  C    F     DCP   +C +  ++ +  + 
Sbjct: 62  GGYYLLKKPDEILMTTIMRILEGPISMVPCVSLNFYEKCDDCPDENACAVHKLMIQVRDN 121

Query: 118 FFDVLTQYSIECLVRNRSS 136
              +    ++  L  N S+
Sbjct: 122 TLQIFRNTTLADLTINASN 140


>gi|325687289|gb|EGD29311.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK72]
          Length = 160

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 11  MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 70

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 71  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S+  +V 
Sbjct: 128 AIQAAMEAELAQTSLNEVVA 147


>gi|125718392|ref|YP_001035525.1| hypothetical protein SSA_1586 [Streptococcus sanguinis SK36]
 gi|125498309|gb|ABN44975.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 150

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGRKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|315304491|ref|ZP_07874765.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
 gi|313627139|gb|EFR95998.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
          Length = 156

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
           M L+K  D    ++        D P     I       S  ++ KIL+ LV +G++ +V 
Sbjct: 1   MKLSKSMDQVFCIMTMLYTQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112
           G  GG  L +  ++I +LD+V+A E          +     S   +    G   +TS  R
Sbjct: 61  GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A   + + L    +  LV  
Sbjct: 121 NADKEYANYLYSQKLAVLVEQ 141


>gi|84686207|ref|ZP_01014102.1| hypothetical protein 1099457000256_RB2654_08387 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665734|gb|EAQ12209.1| hypothetical protein RB2654_08387 [Rhodobacterales bacterium
           HTCC2654]
          Length = 144

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++   H D P    +I      +   + + +  L  AGIV +V+G  GG  L RP 
Sbjct: 11  LHALLHLERH-DGPATSDEIGRMLNTNATVVRRTMGGLRDAGIVGSVKGHGGGWTLARPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
           DQIT+L +  A  E    A   A     C L  +    L   L  A   F   L + ++ 
Sbjct: 70  DQITMLTIYDALGEPSLFALGQAQDAPGCRLEQAANTALGKALDGARRRFRKELERVTVA 129

Query: 129 CL 130
            L
Sbjct: 130 DL 131


>gi|312863871|ref|ZP_07724109.1| transcriptional regulator [Streptococcus vestibularis F0396]
 gi|311101407|gb|EFQ59612.1| transcriptional regulator [Streptococcus vestibularis F0396]
          Length = 149

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + +L   A +  N+       +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLISVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  GG  L +  ++I +L V +A +    S  +     +    CP+  +  +  +L ++L
Sbjct: 61  G-SGGATLVKIPEEINLLQVYRAVDSIGPSGKLFSFHENPNPACPVGRN--IHGILDQSL 117

Query: 116 N----AFFDVLTQYSIECLVRNRSSIKKIFNA 143
                A    L + ++  ++++  +  K   A
Sbjct: 118 EDVQMAMEKELEKKTLAGILKDAKANWKEVGA 149


>gi|169351211|ref|ZP_02868149.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552]
 gi|169292273|gb|EDS74406.1| hypothetical protein CLOSPI_01990 [Clostridium spiroforme DSM 1552]
          Length = 147

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I +L+  A  ++  P +   I+++  +S+ +L KI++ LV AG++ +  G
Sbjct: 1   MKLKNSVEQAICLLIMIAHSDEKTPLKSYNISKSLGVSDSYLKKIIRQLVVAGLITSEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112
           ++GGV L +  D+IT+LD+ +A E     A         F +   +        +     
Sbjct: 61  KKGGVSLKKSPDKITLLDIFEAIEGKEPFARATGLVERVFLNELKEVKEQKQAMILEAFN 120

Query: 113 KALNAFFDVLTQYSIE 128
           +A  ++ + L + +++
Sbjct: 121 QAEKSYKEKLKKITLQ 136


>gi|194467571|ref|ZP_03073558.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
           100-23]
 gi|194454607|gb|EDX43504.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
           100-23]
          Length = 151

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+    P   + IA +   S + + +++  L KAG++ TV G
Sbjct: 1   MKISTRFSDSIHILAFINIYQGTIPLTSNNIASSIETSPVVVRRLMSALNKAGLINTVHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L +  + I++ D+  A E    +          C + G+    L    ++A  A
Sbjct: 61  AA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGNIQETLNGFYQQAETA 119

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
               L + S++ ++      + I +A
Sbjct: 120 AKAKLARTSLQDVIDTIRVKQAIKDA 145


>gi|157150627|ref|YP_001450032.1| RRF2 family protein [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075421|gb|ABV10104.1| RRF2 family protein [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 149

 Score = 93.1 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|262282684|ref|ZP_06060452.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA]
 gi|262261975|gb|EEY80673.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA]
          Length = 149

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKRKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|258509392|ref|YP_003172143.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257149319|emb|CAR88292.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG]
 gi|259650674|dbj|BAI42836.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 146

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 1   MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           M  +      + +  Y      A H DY   I +I+E   I    + K    L K+GI+ 
Sbjct: 1   MAFSVAFSQALEITAYVNAKSQAQHEDY-LSIQKISEMLNIPVPSIKKNSSTLKKSGILT 59

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
           +  G  GG+RL +    IT+ +++ A E +  + +          + G          T+
Sbjct: 60  SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLAASTN 119

Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
           VL +A +A   VL Q SI  L     +
Sbjct: 120 VLNQAEDAMVQVLKQTSIADLAEAAEA 146


>gi|46201015|ref|ZP_00207932.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score = 92.7 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +    A  +        IA +   + + + ++L  L KAG+V + RG  GG  L   
Sbjct: 10  AVHIASLLASMDGKACTSEWIAGSVNTNPVVVRRLLSALAKAGLVHSTRGSAGGSVLALG 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
            ++I++LD+ +A +E    A        DCP+  +    L  V+ +A  A   VL+   +
Sbjct: 70  PERISLLDIHRAVDEEEEPALHNQPPNPDCPVGRNIQSVLVRVIERADAARDGVLSATLL 129

Query: 128 ECLV 131
             +V
Sbjct: 130 SDVV 133


>gi|322385029|ref|ZP_08058679.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
 gi|321270939|gb|EFX53849.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
           51100]
          Length = 149

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEITKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|284036740|ref|YP_003386670.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283816033|gb|ADB37871.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 153

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++K + Y IR L Y A+ +   N+I   ++A    + + FL KI+Q LV+  I+ + +G 
Sbjct: 2   ISKTSGYAIRGLAYLALKSTAVNKIGVHELAAELNVPQPFLGKIMQGLVRRDIISSTKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG           I+DVV A +       CF     +C     C L   +    ++   
Sbjct: 62  NGGFFTNERTLTTPIIDVVDAIDGLGMFRRCFLGL-PECNSEKPCPLHQHVIGFRDSLQH 120

Query: 121 VLTQYSIECLVRN 133
            L   ++  +VR+
Sbjct: 121 SLETLTVHDMVRD 133


>gi|148242252|ref|YP_001227409.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147850562|emb|CAK28056.1| Predicted transcriptional regulator [Synechococcus sp. RCC307]
          Length = 149

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LT+     +R L+  A          ++A+   + E  L +IL  L +A +VE  RGR G
Sbjct: 2   LTRAGTIALRALVELARSPHSVISGPELAKRQELPEARLEQILLQLRQAQLVEARRGRSG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL R AD +++ DV+ A      +     S +      G      + ++   A    L
Sbjct: 62  GYRLSRRADDLSVQDVLDAVGGRRQLNLEIESAEGAIGQAGQRLEQQLQQRLQRAMEREL 121

Query: 123 TQYSIECLVRNRSSIKKIFN 142
           +Q ++  L+ ++ S +   +
Sbjct: 122 SQLTVAELLYDQRSWEASLD 141


>gi|255264484|ref|ZP_05343826.1| transcriptional regulator [Thalassiobium sp. R2A62]
 gi|255106819|gb|EET49493.1| transcriptional regulator [Thalassiobium sp. R2A62]
          Length = 143

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L + A   D     ++IA+    + + + ++L  L  AG++ + RG  GG RL R 
Sbjct: 10  ALHALSHMAYDTDDAQTSAEIADHAGTNPVVVRRVLGKLRAAGLLTSERGHSGGWRLGRE 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
              IT+ DV  A  E+  V          C +  +    +  +L++   +  + L Q +I
Sbjct: 70  TKHITLADVYAALGENL-VVSGQRIKTDTCAVERALDVRVQQILKEIEQSLVERLGQTTI 128

Query: 128 ECL 130
             +
Sbjct: 129 ADV 131


>gi|257867558|ref|ZP_05647211.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873887|ref|ZP_05653540.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801614|gb|EEV30544.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808051|gb|EEV36873.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 141

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  +         +IA++   +  ++ +I+  L  AG++E+ RG+
Sbjct: 1   MKYSTKYSDAIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALN 116
               +L +   +I++LD+  + E+   +         +C + G+  + +VL +       
Sbjct: 61  P-NPKLTKEPYEISLLDIYASVEKDQHLLHADKKTNPNCLIGGN--IQTVLEETYDVLQK 117

Query: 117 AFFDVLTQYSIECLVR 132
                ++  S++ ++ 
Sbjct: 118 KIEQEMSAISLQSIID 133


>gi|15893411|ref|NP_346760.1| hypothetical protein CA_C0115 [Clostridium acetobutylicum ATCC 824]
 gi|15022941|gb|AAK78100.1|AE007524_5 Uncharacterized protein, Yje/RRF2 family [Clostridium
           acetobutylicum ATCC 824]
 gi|325507523|gb|ADZ19159.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 137

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+  DY +RV++Y +    +     + IAE   +   FL K+L+ L+K+GIV++ RG
Sbjct: 1   MRITQEADYSMRVVLYLSKLGYEQKIDAATIAEHEKLPLRFLLKLLRKLIKSGIVKSYRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
            +GG  L +    I + +V++A +    V  C       +    G C + + L    +  
Sbjct: 61  VKGGYALNKYPKDINLREVIEAIDGPICVNRCLTDSSYCNAKRTGICEIHNALSLVRSDL 120

Query: 119 FDVLTQYSIECL 130
              L + + E L
Sbjct: 121 IKNLEKINFEDL 132


>gi|94311031|ref|YP_584241.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93354883|gb|ABF08972.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
           metallidurans CH34]
          Length = 144

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L +AG V T  G 
Sbjct: 1   MSTSSRFAVAVHILTLLA-QAEGPVPSSMIAGSVGTNPALIRRMIGALTEAGFVTTTMGS 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA QIT+L+V +ATE +  +    ++    C +       L  V  +A  A 
Sbjct: 60  TGGAMLTRPASQITLLEVFQATETTALITLHQSAPNPACLVGREITGTLQVVADRAQAAM 119

Query: 119 FDVLTQYSIECLV 131
              L + +I  ++
Sbjct: 120 DATLAEITIASML 132


>gi|184154498|ref|YP_001842838.1| hypothetical protein LAF_0022 [Lactobacillus fermentum IFO 3956]
 gi|260662559|ref|ZP_05863454.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|183225842|dbj|BAG26358.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|260553250|gb|EEX26193.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 141

 Score = 92.7 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R   G+ VL Y  +H D     +++A +   +   + +++  L KAG++ T  G 
Sbjct: 1   MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +  ++IT+LDV +A E+ + +         DCP+  +    LT    K   A 
Sbjct: 60  TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 119

Query: 119 FDVLTQYSIECLVRN 133
              + + ++  +  N
Sbjct: 120 EAAMQEITLAEITAN 134


>gi|319955408|ref|YP_004166675.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola
           DSM 14237]
 gi|319424068|gb|ADV51177.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola
           DSM 14237]
          Length = 143

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YG+R +++ A  +D      +S I+E     + F  KILQ L K  IV +++G 
Sbjct: 2   FSKSCEYGLRAVLFIAQQSDKDTKVSMSTISEEINSPQAFTAKILQKLTKTQIVHSLKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +        + ++V   +       C    K  C     C L     +  +   +
Sbjct: 62  YGGFSILPEKMDTKLSEIVTILDGDSIYKGCALGLK-QCDANSPCPLHFKFVEIRDNLQE 120

Query: 121 VLTQYSIECLVRN 133
           +L   SI+ +V +
Sbjct: 121 MLETTSIKSVVND 133


>gi|229823777|ref|ZP_04449846.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
 gi|229786816|gb|EEP22930.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
          Length = 150

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 12/141 (8%)

Query: 1   MHLTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M ++ R    I    ++Y    +      + ++E+  ++ + +  +L  L  AGI+E+ +
Sbjct: 1   MQISSRFTIAIHSLAVIYL-RQDHQRVTSNFLSESIQVNPVVVRSVLSGLKAAGIIESRQ 59

Query: 59  GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LR 112
           G  GG RL +P D IT  D+    +  +   +     +   DCP+  +  +       L 
Sbjct: 60  G-SGGSRLAKPLDAITFYDIYVTVDSVDKEGLFNFHPNPHQDCPVGRN--IHQAVDGKLI 116

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +   A  + L + +++ +V +
Sbjct: 117 QIQAAMENELKRITMQDVVDD 137


>gi|323489199|ref|ZP_08094431.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
           donghaensis MPA1U2]
 gi|323397086|gb|EGA89900.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
           donghaensis MPA1U2]
          Length = 160

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+    +  +  ++   +  +        I++    S  +  K+L+ LV AG++ +V G
Sbjct: 1   MHMKPGVEQSVYAVLLLNMLPEKAVLPGEAISQQLGTSPTYFQKLLRKLVSAGLITSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
            +GG +L +  + I + D+  A E    +                  C     C LT ++
Sbjct: 61  VKGGFKLNKKPEDINVFDIYVAIEGQQSLYSPSGVLSDLLELEEPERC-----CLLTELM 115

Query: 112 RKALNAFFDVLTQYSIECLVRNRSSIK 138
            +A +A+   + Q +IE L R     +
Sbjct: 116 VEAESAWRSRMEQETIESLSRKMKEQR 142


>gi|187251464|ref|YP_001875946.1| rrf2 family protein [Elusimicrobium minutum Pei191]
 gi|186971624|gb|ACC98609.1| Rrf2 family protein (putative transcriptional regulator)
           [Elusimicrobium minutum Pei191]
          Length = 150

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    + +L   A++    N  + +A++   + + + +IL  L KA IV++  G 
Sbjct: 1   MKTNTRFTTAVHILALLALNKKEANTSALLAKSVNTNPVVVRRILSMLKKANIVDSKPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
           +G V L R    I++L++  A +           +   +C +  +    L   L++A  A
Sbjct: 61  KG-VTLKRGPLTISLLEIYDAVKSPSDTFFPLHKNPSKECFIGANIHSALYDPLKEASQA 119

Query: 118 FFDVLTQYSIECLVR 132
              +L++YS++ + R
Sbjct: 120 AEKILSKYSLKDITR 134


>gi|157163963|ref|YP_001466494.1| transcriptional regulator superfamily [Campylobacter concisus
           13826]
 gi|112800651|gb|EAT97995.1| Rrf2 family protein [Campylobacter concisus 13826]
          Length = 137

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +    I  L+      +       IA +   + + + ++L  L  AG+V    G 
Sbjct: 1   MQVGIKFSTAIHALLCAKFFENEKVTSEFIAGSINTNPVIIRRLLGTLKAAGLVNVAAGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GGV L +    I +L++  A  E   + +  +     CP+ G     L+    +A  A 
Sbjct: 61  -GGVSLAKEPKDINLLEIFNAVNEKEKLFKIHSDSPKACPVGGRIEELLSGHFLRAQTAL 119

Query: 119 FDVLTQYSIECLVRN 133
            + L   +++ L+  
Sbjct: 120 ENELKNVTLQDLLDE 134


>gi|322373240|ref|ZP_08047776.1| Rrf2 family protein [Streptococcus sp. C150]
 gi|321278282|gb|EFX55351.1| Rrf2 family protein [Streptococcus sp. C150]
          Length = 149

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +  R    + VL   A++ D         +A +  ++ + + K L  L KA ++   R
Sbjct: 1   MQIPSRFTIAVHVLTLIALNKDNETKLTSDFMAGSVGVNPVIIRKTLSQLKKADLISVQR 60

Query: 59  GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           G  GG  L +  ++I +L V  A +    S  +          CP+  +  +  +L ++L
Sbjct: 61  G-TGGAALVKSPEEINLLQVYHAVDSIGPSGKLFSFHDHPNPACPVGRN--IHGILDQSL 117

Query: 116 N----AFFDVLTQYSIECLVRNRSS 136
                A    L   ++  ++++  +
Sbjct: 118 EDVQMAMEKELETKTLAGILKDAKA 142


>gi|239636705|ref|ZP_04677707.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri
           L37603]
 gi|239598060|gb|EEQ80555.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri
           L37603]
          Length = 158

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++K  + GI VL+  A   N    +   ++E   +S+  L KIL+ LV A ++ +   
Sbjct: 1   MKISKHFEQGIYVLLILATQENQGAVKSQTLSEKLEVSDSSLKKILRKLVVANLITSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKAT-EESFFVAECFASHK----IDCPLVGS-CGLTSVLRK 113
           + GG +L +  + IT+ DV++A         E     +     D  +  S   +   L  
Sbjct: 61  KDGGFQLNQSIEDITLKDVIEAISNGDVIEFEISHLSRRIFFNDQHIKDSEIKVKQQLND 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           A+ AF + L + S+  L+ +     K+ +
Sbjct: 121 AIQAFNEKLDELSLVELLEDEYFKHKLVD 149


>gi|227514141|ref|ZP_03944190.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087512|gb|EEI22824.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 143

 Score = 92.3 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R   G+ VL Y  +H D     +++A +   +   + +++  L KAG++ T  G 
Sbjct: 3   MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPG- 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +  ++IT+LDV +A E+ + +         DCP+  +    LT    K   A 
Sbjct: 62  TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 121

Query: 119 FDVLTQYSIECLVRN 133
              + + ++  +  N
Sbjct: 122 EAAMQEITLAEITAN 136


>gi|261368478|ref|ZP_05981361.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282569467|gb|EFB75002.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 146

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L + ++        ++IAE+   +  ++ +++  L KAG++   +G 
Sbjct: 1   MKYSTKLSDALHILAFLSMGASQRITSAKIAESVKTNPAYIRQLMSALKKAGLLTNTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
           +    L R   +IT+LDV +A E +  +         DC   +     +  + ++   A 
Sbjct: 60  QANAELTRNPCEITVLDVYRAIEGTKPLLHWDIDTNPDCGVGIYVQLSIADMYQEIQQAA 119

Query: 119 FDVLTQYSIECLVR 132
              +   +++ ++ 
Sbjct: 120 EQKMQVITLQDILD 133


>gi|320095699|ref|ZP_08027354.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977374|gb|EFW09062.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 138

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L+  +   + P   + IA +   +  ++ K+   L KAG + + R   GG  L  P
Sbjct: 8   AIHALILIS-EAERPINSTAIAASVGTNASYIRKLTTRLAKAGFIASSR-AAGGFTLTVP 65

Query: 70  ADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125
           A QI++ D+  A  ++    + +   +   +C +       LT V  +   A    LT  
Sbjct: 66  AQQISLRDIYCAVTDTDRIQLFDIHGNPNDECVVGAHIRPTLTDVFARQQEALERELTTT 125

Query: 126 SIEC 129
           ++  
Sbjct: 126 TLAD 129


>gi|294782082|ref|ZP_06747408.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
 gi|294480723|gb|EFG28498.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
          Length = 141

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +Y  R+L Y ++ + D     ++IAE   I  LF  ++L+ + K G+++  +G
Sbjct: 1   MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNA 117
             GG +L +    IT+ D V        + E        C +   SC  +   L +  N 
Sbjct: 61  ANGGYKLNKDPKDITLRDAV------ETIEEEIIIKDRSCVVGQTSCSVIFKALEEVENN 114

Query: 118 FFDVLTQYSIECLVRNRSSIK 138
           F + L + + + L      +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135


>gi|331004367|ref|ZP_08327840.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411097|gb|EGG90516.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 130

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DY +R++   A+        +++A+   + +   +K+L  L+K+ ++ ++RG 
Sbjct: 1   MLITREMDYAVRIIR--ALKEGTKVSATEVAKKEHLPQAITYKVLNSLLKSKLIGSMRGV 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
            GG  L       T+ D+  A  E   + EC      DC     G C L     +  ++ 
Sbjct: 59  NGGYYLKCDLSNTTLYDICTALGEDMSITECI-RDGYDCINNRCGECILNKEFGRIQSSL 117

Query: 119 FDVLTQYSIECLV 131
              L + +++ L+
Sbjct: 118 NIELQKTTLDKLL 130


>gi|222102654|ref|YP_002539693.1| hypothetical protein Avi_7313 [Agrobacterium vitis S4]
 gi|221739255|gb|ACM39988.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 172

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L ++++  I +L  CA           +A+    +    ++++  LV+ G + + RG 
Sbjct: 1   MRLKRQSEIAIGILTVCAKSPSTKYPAQHLAQEVGATRDHAYQVVALLVRNGFLNSDRGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG+RL R A  I + DV++ T+      +  A       L G   L  ++  A +    
Sbjct: 61  GGGLRLARDAKDIKLADVLRITQPEL---DGNAEEPEPGTLKGQPLLDGIVAAASSFLVS 117

Query: 121 VLTQYSIECLVRNRSS 136
           +L ++++  LV +  S
Sbjct: 118 LLDRFTVADLVASPDS 133


>gi|32475221|ref|NP_868215.1| a transcriptional regulator [Rhodopirellula baltica SH 1]
 gi|32445762|emb|CAD78493.1| conserved hypothetical protein-putative a transcriptional regulator
           [Rhodopirellula baltica SH 1]
          Length = 124

 Score = 91.9 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
                  P     +AE   +   +L ++LQ L  AG+V +  G  GG  LC P D +TIL
Sbjct: 1   MGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGGGYELCVPTDTLTIL 60

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           DVV        + +C    K    L   C L + L +   A  +     +I+ LV + + 
Sbjct: 61  DVVNTVAPVERIRKCPLGLKSHTDL---CPLHTELDRVYAATEEAFRGVTIDDLVNSTNP 117

Query: 137 IKKIFNA 143
           I  +  +
Sbjct: 118 ILPLCES 124


>gi|307705360|ref|ZP_07642222.1| transcriptional regulator family protein [Streptococcus mitis
           SK597]
 gi|307621147|gb|EFO00222.1| transcriptional regulator family protein [Streptococcus mitis
           SK597]
          Length = 145

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALKGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL     
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
           +   A    L Q S+E +V +  S  K
Sbjct: 118 RIQQAMEAELGQTSLEQVVADAESQMK 144


>gi|88607096|ref|YP_505255.1| rrf2 family protein /cysteine desulfurase [Anaplasma
           phagocytophilum HZ]
 gi|88598159|gb|ABD43629.1| rrf2 family protein /cysteine desulfurase [Anaplasma
           phagocytophilum HZ]
          Length = 486

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA++  +SE +L +++  L   G+V+  RG  GG  L    D+IT+  ++ +  +   + 
Sbjct: 2   IADSQSLSEGYLERVISHLKSRGLVKPTRGPGGGYSLGMSPDRITLDMLLDSVGDKVKMV 61

Query: 90  ECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
            C A     C     G C    +               +I  +  + +++K++   G
Sbjct: 62  RCDADGNTGCISSYAGKCNSHDLWESMEKYMMHYFANTTILDV--SNNTLKELGGGG 116


>gi|116328585|ref|YP_798305.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331314|ref|YP_801032.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121329|gb|ABJ79372.1| Transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125003|gb|ABJ76274.1| Transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 139

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T R    I +L   ++         ++AE+   + + + KIL  L   GIV    G  G
Sbjct: 1   MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNRGIVRNQMGPNG 60

Query: 63  GVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           G  L +    I + ++  A +E  F +     + K  C       L+ V  KA     D 
Sbjct: 61  GYVLAKTPSAINLKEIYVAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEDE 120

Query: 122 LTQYSIECLVRNR 134
           L   ++  L+   
Sbjct: 121 LGSTNL-DLIARE 132


>gi|315647519|ref|ZP_07900621.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315276958|gb|EFU40299.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 160

 Score = 91.9 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 14/139 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+    +  +  L+   +  D        I++    S  +  K+L+ LV A I+ +V G
Sbjct: 1   MHMKTGVEQSVYALVLLNMLPDKAVLPGEAISQQLGASATYFQKLLRKLVTADIITSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
            +GG RL +  + I + DV  A E    +               +  C     C LT+++
Sbjct: 61  IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLEKEESC-----CLLTNLM 115

Query: 112 RKALNAFFDVLTQYSIECL 130
            +A +++  VL + +I  L
Sbjct: 116 EEAESSWKAVLKRETIASL 134


>gi|83313117|ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82947958|dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 121

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           +        IA +   + + + ++L  L KAG+V + RG  GG  L RPAD+I++LD+ +
Sbjct: 2   DGQACTSEWIAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHR 61

Query: 81  ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
           A +E    A         CP+  +    L  V+ +A  A   VL+   +  +V
Sbjct: 62  AVDEEEEPALHNQPPNPACPVGRNIQSVLVRVMERADAARDAVLSTTKLSEVV 114


>gi|329926661|ref|ZP_08281072.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
 gi|328939070|gb|EGG35435.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
          Length = 160

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+    +  +  L+   +  D        I++    S  +  K+L+ LV A ++ +V G
Sbjct: 1   MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
            +GG RL +  + I + DV  A E    +               +  C     C L+ ++
Sbjct: 61  IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESC-----CLLSDLM 115

Query: 112 RKALNAFFDVLTQYSIECL 130
            +A +++  VL + +I  L
Sbjct: 116 EEAESSWKAVLKRETIASL 134


>gi|327470615|gb|EGF16071.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 149

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIVKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137


>gi|313207165|ref|YP_004046342.1| transcriptional regulator, badm/rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|312446481|gb|ADQ82836.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
           anatipestifer DSM 15868]
 gi|315022434|gb|EFT35461.1| rrf2 family protein [Riemerella anatipestifer RA-YM]
 gi|325335395|gb|ADZ11669.1| transcriptional regulator, BadM/Rrf2 family protein [Riemerella
           anatipestifer RA-GD]
          Length = 145

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 3   LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR   Y  I    +   +++ +A+     E F  KIL  L K  IV +++G 
Sbjct: 2   FSKACEYGIRACAYITIESMQNRKVKVADVAKKVGTPEAFTAKILSALTKHNIVNSIKGP 61

Query: 61  RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +  + A  I I D+V A +    ++ C       C     C L        N   
Sbjct: 62  YGGFEIGEQRAKSIKIKDIVIAIDGHSILSSCSLGFS-SCDESNPCPLHFKYVSVRNELC 120

Query: 120 DVLTQYSIECL---VRNRSS 136
            +L   ++  +   V+N+ S
Sbjct: 121 KMLDTTTLFEMAIDVKNKKS 140


>gi|89096273|ref|ZP_01169166.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
 gi|89089127|gb|EAR68235.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
          Length = 138

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +    I+++  +  + + K+L  L + G +++  G  GG    R 
Sbjct: 8   AIHSLAYLALQLDRMSTSEAISKSAGVHPVRIRKVLSLLKRNGFIKSKEGTGGGFIFARE 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            D++++ D+ K T E +    +C  S++  C +  +    L S+   A     + L  Y+
Sbjct: 68  LDEVSLWDIYKITSEGALQP-KCPESNE-QCIVGANMRNVLFSIFIGAEEHLGEYLKDYT 125

Query: 127 IECLVR 132
           I+ +V 
Sbjct: 126 IKDIVE 131


>gi|229020328|ref|ZP_04177094.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
 gi|229026559|ref|ZP_04182908.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228734736|gb|EEL85381.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
 gi|228740964|gb|EEL91196.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
          Length = 157

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           Y + +L               +++   +S  +L K+++ LV+AG+V +V G +GG RL  
Sbjct: 10  YALLLLNRL--PKQTMLSGESLSQQLHVSPTYLQKLMRKLVRAGLVSSVPGVKGGFRLQA 67

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFFDVLTQYS 126
             ++I I DV  A E    +            L    +C L+ V+ +A  A+  +L + +
Sbjct: 68  VPEKIRIYDVYIAVEGLESLYRSNGIFHTMFQLKENTTCLLSDVMEEAEYAWKSILKRTT 127

Query: 127 IECL 130
           I  L
Sbjct: 128 IASL 131


>gi|302532311|ref|ZP_07284653.1| rrf2 family protein [Streptomyces sp. C]
 gi|302441206|gb|EFL13022.1| rrf2 family protein [Streptomyces sp. C]
          Length = 144

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  + R       L + A              QIA +   + + + + L  L  AG+VE+
Sbjct: 1   MSASSRMTVATHTLTWMARVCPRRPGGIVTSEQIAASVNTNPVVIRRTLGSLRDAGLVES 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
            RG+  G RL R  + IT+ DV  A E    +    +     CP+       L  V  +A
Sbjct: 61  RRGQGAGWRLARTPESITLRDVHLAVEPEPLIPLHSSPPNRKCPVAQGIPAVLREVYDRA 120

Query: 115 LNAFFDVL 122
             A    L
Sbjct: 121 EEAMKAEL 128


>gi|313122793|ref|YP_004033052.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279356|gb|ADQ60075.1| Predicted transcriptional regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 148

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 6/147 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK T   I +L+  A           +A +   +  ++ K++  L    I+ + RG+
Sbjct: 1   MRDTKYT-VAIHILVMLATSP-RDLNSDDLAASVGTNASYIRKVMALLKDHEIIASQRGK 58

Query: 61  RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
            G  RL +  + +++L++ +A       + +   +    CP+  +    +   L +A   
Sbjct: 59  SG-TRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
             + L + S+  ++       +  +AG
Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144


>gi|331265868|ref|YP_004325498.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
 gi|326682540|emb|CBZ00157.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
          Length = 143

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   D       +AE+   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 3   TKFSVALHILTMISESKDT-LSSQALAESVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++T+L++  AT+E     +     +   DCP+       ++ +   + +    
Sbjct: 61  QLSKSPKKMTLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASSESQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 KLANQTLEDVIDN 133


>gi|329939769|ref|ZP_08289070.1| Rrf2 family transcriptional regulator, group III [Streptomyces
           griseoaurantiacus M045]
 gi|329301339|gb|EGG45234.1| Rrf2 family transcriptional regulator, group III [Streptomyces
           griseoaurantiacus M045]
          Length = 136

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L   A         ++IAE+   + + + ++L  L  A +V +  GR GG  L R  
Sbjct: 1   MHALAMLANRRGGSLTSAEIAESLDSNPVLVRRVLGRLRDARLVWSTEGRGGGWSLARAP 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128
             IT+ D   A E+    +         C +  + G  L +  R A  A  + L   +I 
Sbjct: 61  RDITLYDAYAAVEDGQVFSRHAHPPNGTCAIGRNIGDLLDAEFRSAERALEEQLRGTTIA 120

Query: 129 CLVRNRSSIKKIFNA 143
            L      ++++ +A
Sbjct: 121 GL------LRQVLDA 129


>gi|255004297|ref|ZP_05279098.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
           marginale str. Virginia]
          Length = 506

 Score = 91.6 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
            P R S IA+   +SE +L +++  L   G+V++ RG  GG  L  P + IT+  ++ + 
Sbjct: 15  QPKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSV 74

Query: 83  EESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
            +   +  C +      P  G  C   ++           L   SI  +  N 
Sbjct: 75  GDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGIERYVMHYLKNTSILDVFNNN 127


>gi|326334008|ref|ZP_08200237.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
 gi|325948157|gb|EGD40268.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
          Length = 153

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 4   TKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
             R    + VL Y A         P    ++A +  ++ + + K+L PL  AG+V +  G
Sbjct: 6   NTRFAVAVHVLTYLASCAAAGRTTPVSSDELAASTAVNPVHVRKVLGPLRTAGLVRSRPG 65

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKAL 115
             GG  L      + +  V +  +    V          CP+  S  +  VL    R+  
Sbjct: 66  AHGGWELAADPGVVNLAQVWQLLQGDDPVLGIHG-PNPACPVGAS--IQGVLTDLDRRVA 122

Query: 116 NAFFDVLTQYSIECLVRN 133
            A    L   ++  ++ +
Sbjct: 123 KAVLAELEGITLNDVLDD 140


>gi|149196442|ref|ZP_01873497.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
 gi|149140703|gb|EDM29101.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
          Length = 147

 Score = 91.6 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 2/140 (1%)

Query: 2   HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L K+ +Y I  L +   ++    + + +I E          + +Q +  AGI+++++G 
Sbjct: 3   KLNKKVEYAIIALQHMKNVNEGEMSTVKEICELYGAPFDVTSRAMQKMASAGILKSIKGA 62

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     ++ +LD++++      +A C       C ++ +C +   + +       
Sbjct: 63  HGGYLIQENLGELKLLDLIESISGDISLANCVID-ACKCDMISTCNIVDPITRLNELLRK 121

Query: 121 VLTQYSIECLVRNRSSIKKI 140
              + ++  L++ R S  ++
Sbjct: 122 FFAEMTVLDLLQGRESQPQM 141


>gi|167745831|ref|ZP_02417958.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
 gi|317470556|ref|ZP_07929944.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|167654695|gb|EDR98824.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
 gi|316902071|gb|EFV23997.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 137

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +++ TDY +R+L   A+ +     I +I       + F ++I++ L  AG +   RG 
Sbjct: 1   MLISRETDYALRILR--ALSDGKKRSIEEICSLEATPKQFAYRIIKKLETAGWIIITRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
            GG RL      I++  +++     F +  CF     +C         C +   L +   
Sbjct: 59  EGGCRLTADLHDISLFQLMQGLGSGFGINACF-EEGYECTRTPLCDEPCHIKEGLLQLEA 117

Query: 117 AFFDVLTQYSIECLV 131
           A    L + S+  L+
Sbjct: 118 AIEKELKEASLYSLI 132


>gi|325571307|ref|ZP_08146807.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
 gi|325155783|gb|EGC67979.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
          Length = 156

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           TK +D  I +L Y  +         +IA++   +  ++ +I+  L  AG++E+ RG+   
Sbjct: 20  TKYSD-AIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRVAGLIESQRGKP-N 77

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119
            +L +  ++I++LD+  + E+   +         +C + G+  +  VL +          
Sbjct: 78  PKLTKEPNEISLLDIYASVEKDHHLLHADKKTNPNCLIGGN--IQGVLEETYDVLQKKIE 135

Query: 120 DVLTQYSIECLVR 132
             ++  S++ ++ 
Sbjct: 136 QEMSAISLQSIIE 148


>gi|313676812|ref|YP_004054808.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
           DSM 4126]
 gi|312943510|gb|ADR22700.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
           DSM 4126]
          Length = 144

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR ++Y A  +      +I  IAE       F  KIL  LVK  IV ++ G 
Sbjct: 2   FSKSCEYGIRAVIYIATQSKKTDRVKIGDIAEKINSPVAFTAKILGLLVKNKIVSSITGP 61

Query: 61  RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  + +   D++ + D+V+  + +     C      +C     C +     K      
Sbjct: 62  KGGFYIEQNRLDKVFLKDIVEVIDGNKIYKGC-GLGLNECSASQPCPVHHKFAKVRAEID 120

Query: 120 DVLTQYSIECLVR 132
            +L+  +++ L  
Sbjct: 121 YMLSTTTLKELTE 133


>gi|322391381|ref|ZP_08064851.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC
           700780]
 gi|321145807|gb|EFX41198.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC
           700780]
          Length = 145

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQISSRFTIATHMLVIIALEGKENKVTSDFLASSVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +  + I++LD+ +A E   ++  +     +   +CP+  +  +  VL +   
Sbjct: 61  -TGGAEIIKNLEDISLLDIYQAVECLGKTGQLFSFHDNPNPNCPVGAN--IHVVLDEKLL 117

Query: 114 -ALNAFFDVLTQYSIECLVRNRSS 136
               A    L+  S+  LV +  +
Sbjct: 118 KIQQAMEKELSLTSLAQLVTDTEA 141


>gi|228475630|ref|ZP_04060348.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis
           SK119]
 gi|228270412|gb|EEK11847.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis
           SK119]
          Length = 160

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+   +  I VL+    +        + +++   +S+ +L KI++ LVK  +V +  G
Sbjct: 1   MKLSTGWEQAIYVLLILNQLPRQSVMTSTALSKRLKVSDSYLKKIVKALVKENLVYSTTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
           + GG  L +    IT  DV  A E    +            + +      C ++  L   
Sbjct: 61  KNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNISIALNHI 120

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
            +     L+  +++ + ++   +  +
Sbjct: 121 EHTLISTLSNINLDDIYQDIIKLYNL 146


>gi|332637437|ref|ZP_08416300.1| transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 162

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K     + +++  A +  D   +  +++    +S  +L KI + L  AG++ +   
Sbjct: 1   MKLSKAFFQTVGIVVMLAQLPEDETLKSQEMSARMQVSHSYLLKIAKKLKDAGVITSSAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGSCGLTSVLR 112
           + GG  L +  ++I+ LD+  A E      E F                  S  L  +L 
Sbjct: 61  KNGGYSLAKKPEEISFLDLFDAVESGEAFHENFDVEIAQGIFITPTLIEEKSNRLIDLLN 120

Query: 113 KALNAFFDVLTQYSIECLV 131
           +A  A+ + L  + +  ++
Sbjct: 121 EAEQAYRERLANHKLSDIL 139


>gi|328958167|ref|YP_004375553.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
 gi|328674491|gb|AEB30537.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
          Length = 156

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK  +  I +L   +  ++Y P     + +     S  ++ KI++ LV +G+  ++ 
Sbjct: 1   MKLTKGLEQAICILAMLSTQDNYIPITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111
           G  GG  L +  ++I +L++V+A E           + + F+             L +  
Sbjct: 61  GSNGGFILAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDVGEPASNGEK-TLVTTF 119

Query: 112 RKALNAFFDVLTQYSIECLV 131
            +A   + + L + +++ L+
Sbjct: 120 EEADKQYTNFLKRQTLDQLI 139


>gi|284802803|ref|YP_003414668.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
 gi|284995945|ref|YP_003417713.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
 gi|315283437|ref|ZP_07871629.1| Rrf2 family protein [Listeria marthii FSL S4-120]
 gi|284058365|gb|ADB69306.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
 gi|284061412|gb|ADB72351.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
 gi|313612915|gb|EFR86865.1| Rrf2 family protein [Listeria marthii FSL S4-120]
          Length = 157

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
           M L+K  D    ++        D P     I       S  ++ KIL+ LV +G++ +V 
Sbjct: 2   MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 61

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112
           G  GG  L +  ++I +LD+V+A E          +     S   +    G   +TS  R
Sbjct: 62  GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 121

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A   + + L    +  LV  
Sbjct: 122 NADKEYANYLYSQKLSVLVEQ 142


>gi|16801523|ref|NP_471791.1| hypothetical protein lin2461 [Listeria innocua Clip11262]
 gi|16804399|ref|NP_465884.1| hypothetical protein lmo2361 [Listeria monocytogenes EGD-e]
 gi|46908531|ref|YP_014920.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092459|ref|ZP_00230249.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|47097339|ref|ZP_00234894.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|217963540|ref|YP_002349218.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|224499040|ref|ZP_03667389.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
 gi|224503509|ref|ZP_03671816.1| Rrf2 family protein [Listeria monocytogenes FSL R2-561]
 gi|226224912|ref|YP_002759019.1| hypothetical protein Lm4b_02331 [Listeria monocytogenes Clip81459]
 gi|254825058|ref|ZP_05230059.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|254826814|ref|ZP_05231501.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|254831214|ref|ZP_05235869.1| hypothetical protein Lmon1_07647 [Listeria monocytogenes 10403S]
 gi|254854313|ref|ZP_05243661.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|254901113|ref|ZP_05261037.1| hypothetical protein LmonJ_14903 [Listeria monocytogenes J0161]
 gi|254914037|ref|ZP_05264049.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254933311|ref|ZP_05266670.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|254938352|ref|ZP_05270049.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|254992735|ref|ZP_05274925.1| hypothetical protein LmonocytoFSL_06501 [Listeria monocytogenes FSL
           J2-064]
 gi|255017809|ref|ZP_05289935.1| hypothetical protein LmonF_08865 [Listeria monocytogenes FSL
           F2-515]
 gi|255027001|ref|ZP_05298987.1| hypothetical protein LmonocytFSL_12903 [Listeria monocytogenes FSL
           J2-003]
 gi|255521538|ref|ZP_05388775.1| hypothetical protein LmonocFSL_10010 [Listeria monocytogenes FSL
           J1-175]
 gi|290893648|ref|ZP_06556630.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|300763892|ref|ZP_07073888.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|16411849|emb|CAD00439.1| lmo2361 [Listeria monocytogenes EGD-e]
 gi|16414983|emb|CAC97688.1| lin2461 [Listeria innocua Clip11262]
 gi|46881803|gb|AAT05097.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47014290|gb|EAL05268.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47019236|gb|EAL09979.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
 gi|217332810|gb|ACK38604.1| Rrf2 family protein [Listeria monocytogenes HCC23]
 gi|225877374|emb|CAS06088.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258599191|gb|EEW12516.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
 gi|258607706|gb|EEW20314.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
 gi|258610965|gb|EEW23573.1| Rrf2 family protein [Listeria monocytogenes F6900]
 gi|290556850|gb|EFD90382.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
 gi|293584871|gb|EFF96903.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
 gi|293592056|gb|EFG00391.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594300|gb|EFG02061.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
 gi|300515233|gb|EFK42284.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
 gi|307571883|emb|CAR85062.1| HTH rrf2-type DNA-binding domain protein [Listeria monocytogenes
           L99]
 gi|313607154|gb|EFR83645.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
 gi|313617478|gb|EFR89842.1| Rrf2 family protein [Listeria innocua FSL S4-378]
 gi|313622624|gb|EFR93003.1| Rrf2 family protein [Listeria innocua FSL J1-023]
 gi|328465394|gb|EGF36641.1| hypothetical protein LM1816_13597 [Listeria monocytogenes 1816]
 gi|328471579|gb|EGF42459.1| hypothetical protein LM220_03882 [Listeria monocytogenes 220]
          Length = 156

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
           M L+K  D    ++        D P     I       S  ++ KIL+ LV +G++ +V 
Sbjct: 1   MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112
           G  GG  L +  ++I +LD+V+A E          +     S   +    G   +TS  R
Sbjct: 61  GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A   + + L    +  LV  
Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141


>gi|254509346|ref|ZP_05121435.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           16]
 gi|219547742|gb|EED24778.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
           16]
          Length = 115

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           +V +VRG  GG RL   A  I+I  V+ A +ES    +C  + K DC     C   ++ R
Sbjct: 1   MVASVRGPGGGYRLGEDAQSISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWR 58

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138
              +   D L   ++  L+ +   ++
Sbjct: 59  DLSSRISDFLNNITLGELMHDNEVLE 84


>gi|56460707|ref|YP_155988.1| rf2 family transcriptional regulator [Idiomarina loihiensis L2TR]
 gi|56179717|gb|AAV82439.1| Predicted transcriptional regulator, rrf2 family [Idiomarina
           loihiensis L2TR]
          Length = 138

 Score = 91.2 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + +L++      +P     I++    + + + +++  L + G V +V+G  
Sbjct: 6   QLSR----ALHILIHLGQKP-HPVTSETISKMLKTNPVVVRRMMGRLRENGYVTSVKGHN 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
           GG  L R   +IT+LD+ KA  +       F      C +  +    L   ++ A     
Sbjct: 61  GGWSLSRSLREITLLDIHKALGDKNLFTIGFTEPDSKCLIEKAVNTQLEQTMKDAEAVLL 120

Query: 120 DVLTQYSIECL 130
           D   + ++  L
Sbjct: 121 DKFAKVTLNDL 131


>gi|332830471|gb|EGK03099.1| hypothetical protein HMPREF9455_01349 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 136

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           ++    + +L+  A   D       +A +  I+ + + K L  L + GIV +  G+ GG 
Sbjct: 4   RKFSISMHILVLLATSLDEWISSDYLAGSMNINPVLVRKELSNLRRHGIVVSKEGKNGGS 63

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
            L +PAD+I + D+ +       +    AS    CP+       L  +  +A +     L
Sbjct: 64  MLAKPADKILLSDIYRIVSSQTALGNSLASPNPKCPVGKQINEHLHDLNMEAEDFIIAKL 123

Query: 123 TQYSIEC 129
           +  ++  
Sbjct: 124 SDQTLAD 130


>gi|220904116|ref|YP_002479428.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868415|gb|ACL48750.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 181

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P   S++A    ISE F+ KI++ L   GI+++VRG  GG  L R  + IT+ D++ A E
Sbjct: 25  PASASELAACTGISEKFVQKIMRLLQAEGIIKSVRGIAGGHMLARNPEAITLADIICAVE 84

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
               +         + P   +     V  KA  A  + L   ++   VR  + + +
Sbjct: 85  GGITL----PGVNSEAPAGKAAL--DVWDKAATALRNSLDAVTLCS-VRQNAGLSQ 133


>gi|307710681|ref|ZP_07647110.1| transcriptional regulator family protein [Streptococcus mitis
           SK321]
 gi|307617452|gb|EFN96623.1| transcriptional regulator family protein [Streptococcus mitis
           SK321]
          Length = 143

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 3   TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNAGLITSHQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++T+L++  AT+E     +     +   DCP+       ++ +   A +    
Sbjct: 61  QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 ELANQTLEDVIDN 133


>gi|60594413|pdb|1YLF|A Chain A, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
           Cereus, A Member Of The Rrf2 Family Of Putative
           Transcription Regulators.
 gi|60594414|pdb|1YLF|B Chain B, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
           Cereus, A Member Of The Rrf2 Family Of Putative
           Transcription Regulators.
 gi|60594415|pdb|1YLF|C Chain C, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
           Cereus, A Member Of The Rrf2 Family Of Putative
           Transcription Regulators
          Length = 149

 Score = 91.2 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L     +          AE+   + + + KI   L +AG V   RG  
Sbjct: 8   KISSRFSIAVHILSILKNNPSSLCTSDYXAESVNTNPVVIRKIXSYLKQAGFVYVNRGP- 66

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
           GG  L +   +IT+LDV  A    E   +         DCP+  +    L  +L +A +A
Sbjct: 67  GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSA 126

Query: 118 FFDVLTQYSIECL 130
             +VL   +   L
Sbjct: 127 XEEVLRNITXGQL 139


>gi|332975394|gb|EGK12288.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437]
          Length = 86

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
           +V++VRG  GG +L R  ++IT  DV++  E      E               G   + R
Sbjct: 1   MVKSVRGAYGGYKLSRSPEEITAGDVIRVLEGPISPVEFNEEEDP--------GRRELWR 52

Query: 113 KALNAFFDVLTQYSIECL 130
           +  +A  +VL   ++  L
Sbjct: 53  RIRDAIAEVLDNTTLADL 70


>gi|261406785|ref|YP_003243026.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261283248|gb|ACX65219.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 160

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH+    +  +  L+   +  D        I++    S  +  K+L+ LV A ++ +V G
Sbjct: 1   MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
            +GG RL +  + I + DV  A E    +               +  C     C L+ ++
Sbjct: 61  IKGGFRLRKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESC-----CLLSDLM 115

Query: 112 RKALNAFFDVLTQYSIECL 130
            +A  ++  VL + +I  L
Sbjct: 116 EEAETSWKAVLKRETIASL 134


>gi|327490256|gb|EGF22044.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1058]
          Length = 149

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+        S I A +  ++ + + K L  L  AG++   RG
Sbjct: 1   MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
             GG  + +    I++LDV  A E   +S  +         DCP+  +  + +VL     
Sbjct: 61  -TGGAEIAKDLKGISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117

Query: 114 -ALNAFFDVLTQYSIECLVR 132
               A    L Q S++ +V 
Sbjct: 118 AIQAAMESELAQTSLDEVVA 137


>gi|289435629|ref|YP_003465501.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171873|emb|CBH28419.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313632170|gb|EFR99244.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
 gi|313636561|gb|EFS02277.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
          Length = 156

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
           M L+K  D    ++        D P     I       S  ++ KIL+ LV +G++ +V 
Sbjct: 1   MKLSKSMDQVFCIMTMLYTQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112
           G  GG  L +  ++I +LD+V+A E          +     S   +    G   +TS  R
Sbjct: 61  GNNGGFTLAKNPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A   + + L    +  LV  
Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141


>gi|257877644|ref|ZP_05657297.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811810|gb|EEV40630.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 156

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           TK +D  I +L Y  +         +IA++   +  ++ +I+  L  AG++E+ RG+   
Sbjct: 20  TKYSD-AIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGKP-N 77

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119
            +L +  ++I++LD+  + E+   +         +C + G+  + +VL +          
Sbjct: 78  PKLTKEPNEISLLDIYASVEKDQHLLHADKKTNPNCLIGGN--IQTVLEETYDVLQKKIE 135

Query: 120 DVLTQYSIECLVR 132
             ++  S++ ++ 
Sbjct: 136 QEMSAISLQSIID 148


>gi|306825709|ref|ZP_07459048.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432070|gb|EFM35047.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 145

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  AI   +       +A +  ++ + + K L  L KAG++   RG
Sbjct: 1   MQISSRFTIATHMLIIIAIKGRESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++ DV +A E   +S  +     +   +CP+  +  +  VL     
Sbjct: 61  -TGGTEIIKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHKVLDQKLL 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
               A  + L Q S+  +V +  +
Sbjct: 118 DIQVAMENQLRQMSLAQVVADAEA 141


>gi|313672780|ref|YP_004050891.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939536|gb|ADR18728.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 144

 Score = 90.8 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 3/141 (2%)

Query: 1   MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L K+  DY IR++ Y  +  D   ++ +I+E   IS+    KIL  L K GI++T  G
Sbjct: 1   MSLVKKEVDYAIRIIAYL-LGKDNLVKMEEISEKLFISQPNTIKILHKLSKCGIIKTKTG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           + GG+ L +    ++I D++        +  C  +    C L   C +T    +      
Sbjct: 60  KNGGIILKKEVIDLSIYDILTCMGFEAEINVCV-NIPESCKLNPICSITHFFAEIQYDVI 118

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           + L    I+  + +  ++ KI
Sbjct: 119 ERLKNAKIKDFIFDDKALSKI 139


>gi|114328438|ref|YP_745595.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316612|gb|ABI62672.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 143

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H + P     +A     + + + + +  L  AG V + +G  
Sbjct: 6   RLSRM----LHVLLHMARH-EGPMTSEALARMLGTNPVVVRRTMAGLRDAGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
           GG  + +P   +++LDV +A       A    +   DC +  +    L  VLR A     
Sbjct: 61  GGWVIAQPLKNVSLLDVHRAVGGPRLFAIGHENANADCAVEKAVNTALEGVLRDAEALLV 120

Query: 120 DVLTQYSIECLVRN 133
             L   S+  L R+
Sbjct: 121 ARLDSVSLAELARD 134


>gi|228472954|ref|ZP_04057711.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275536|gb|EEK14313.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 143

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AI++  D    + +I+E   I   FL K+LQ L K   + + +G 
Sbjct: 2   LSNSSKYAINAVLYLAINSSVDRKKGVKEISEVLHIPTAFLAKLLQILAKKKAICSAKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  +     +  + D+V+  +     + C    +  C     C +   ++   + F  
Sbjct: 62  GGGFYITPENLKAPLADIVRYIDGGDKFSICLLGIR-SCSEETPCPMHYAVKPFRDEFLQ 120

Query: 121 VLTQYSIE 128
            L +++IE
Sbjct: 121 ELERHNIE 128


>gi|42522704|ref|NP_968084.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
 gi|39573900|emb|CAE79077.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
          Length = 137

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +R    + ++   A H        ++  +   +   + +++  LV AG++ + +G+ GGV
Sbjct: 4   QRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGV 63

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF----FD 120
           +L +   +I++ DV  A  +   +A        +C +  SC +  ++ + ++       D
Sbjct: 64  KLAKAPKEISLRDVYVAITDKKLIATPDKEPFKNCVV--SCSMKKLMCELVDGIENNSMD 121

Query: 121 VLTQYSIECL 130
            L    +  L
Sbjct: 122 YLGGIRLSDL 131


>gi|301166453|emb|CBW26029.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 139

 Score = 90.4 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    RT   I  +++ ++  D P    ++ +    + + + +IL  L KA IV++ +G 
Sbjct: 1   MKKNSRTSVAIHSVLHLSMM-DRPVTSEELGQCQNTNPVMIRRILGDLKKAEIVDSEKGH 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTS-VLRKALNAF 118
            GG  L +    IT  D+  A  +S   +        +C ++   C      L +A    
Sbjct: 60  GGGWILLKSPKAITFQDIFMALNDSLLPSPIELDEGENCLIMKEICSTMDEFLDEAEILL 119

Query: 119 FDVLTQYSIECLVRN 133
              L++ +I+ L+  
Sbjct: 120 AKKLSKITIQSLINQ 134


>gi|83645081|ref|YP_433516.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83633124|gb|ABC29091.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
          Length = 135

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A  +D P    QIAE    + + + + +  L   G V++ +G  GG  L +P 
Sbjct: 11  LHVLIHLAA-SDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQGYVDSAKGHSGGWTLIKPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
           ++IT+LDV  A                +C +  +    L + +  A         + ++ 
Sbjct: 70  NEITLLDVHNALGGPTLFTLGLTDEHSNCFIERAINEALKTAMDDAEKKLLSRFGEITL- 128

Query: 129 CLVRNRS 135
            ++  RS
Sbjct: 129 DILAKRS 135


>gi|304407124|ref|ZP_07388778.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344111|gb|EFM09951.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 139

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ R    I +L    + ++     + IA +   + + + +I+  L KAG++E+  G  G
Sbjct: 2   ISSRFTVAIHILALIEM-SEGSITSAYIAGSVNTNPVVIRRIMSLLSKAGLIESRPGVTG 60

Query: 63  GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            ++L RP + IT LDV +A E  E+  +     +    C +  +    L   L +A    
Sbjct: 61  -MKLVRPLESITFLDVYRAVEVPENDVLFAIHQNSNPQCVVGRNVQNALEEPLLEAQRQM 119

Query: 119 FDVLTQYSIECLVRNRSSIK 138
              L   ++  +VR   S +
Sbjct: 120 ELSLANTTVAQVVRQMESKQ 139


>gi|307709675|ref|ZP_07646127.1| transcriptional regulator family protein [Streptococcus mitis
           SK564]
 gi|307619573|gb|EFN98697.1| transcriptional regulator family protein [Streptococcus mitis
           SK564]
          Length = 136

 Score = 90.4 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  A ++ + +G+ G  
Sbjct: 3   TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNADLIHSQQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   +IT+L++  AT+E     +     +   DCP+       ++ +   A +    
Sbjct: 61  QLSKSPKKITLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 ELANQTLEDVIDN 133


>gi|229084913|ref|ZP_04217166.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
 gi|228698386|gb|EEL51118.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
          Length = 146

 Score = 90.0 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++ R    + +L     +         +AE+   + + + KI+  L +A  V   RG  
Sbjct: 5   KISSRFSIAVHILSILKNNPSSICTSEFMAESVNTNPVVIRKIMFYLKQAKFVYVNRGP- 63

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
           GG  L +  ++IT+LDV  A    E   +         DCP+  +    L  +L +A +A
Sbjct: 64  GGAGLLKGLNEITLLDVYHAVNVVEEDKLFYIHEQPNPDCPIGANIQAVLEVILVQAQSA 123

Query: 118 FFDVLTQYSIECL 130
             +VL   ++E L
Sbjct: 124 MEEVLKNITMEHL 136


>gi|170743141|ref|YP_001771796.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168197415|gb|ACA19362.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
           4-46]
          Length = 162

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 13  VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            ++  A+H          +A    +    L  +LQ LV+ G+++ +RG  GG  L R   
Sbjct: 30  AVIDIALHARPQAVSARALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELARERR 89

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           +I + D+ +A      +       +   P   +  +  +L  A  AF   L   ++E L 
Sbjct: 90  RIRVGDIARAV---LAL----GDGEAGRPAPAAGLIDPLLAAAGQAFLATLDAVTVEELC 142

Query: 132 RNRSSIK 138
           R   + +
Sbjct: 143 RRAEAAR 149


>gi|300902070|ref|ZP_07120084.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|301307042|ref|ZP_07213079.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|300405815|gb|EFJ89353.1| Rrf2 family protein [Escherichia coli MS 84-1]
 gi|300837728|gb|EFK65488.1| Rrf2 family protein [Escherichia coli MS 124-1]
 gi|315252301|gb|EFU32269.1| Rrf2 family protein [Escherichia coli MS 85-1]
          Length = 148

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            TK  +YGIR  ++ A+++       + +IA++    E F  KILQ L K  I+ +V+G 
Sbjct: 2   FTKACEYGIRACIFVALNSMEKRRVSLKEIAQSIDSPEYFTAKILQKLAKGKIIYSVQGA 61

Query: 61  RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG  +       I+I D+V   +       C    K  C  V  C +    +       
Sbjct: 62  QGGFEMEEAKIRTISIEDIVLVIDGEVAFTMCVLGLK-KCSEVNPCPVHHKYKNIKADLK 120

Query: 120 DVLTQYSIECLVRN 133
           +++   ++  +V  
Sbjct: 121 EMIKTTTVFDMVDQ 134


>gi|153811519|ref|ZP_01964187.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
 gi|149832260|gb|EDM87345.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
          Length = 136

 Score = 90.0 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I +     I +D       +A +   + + + KILQ L  AG++E  RG  GGV + RP
Sbjct: 2   AIHMFACIDIFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60

Query: 70  ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123
            +QIT LDV KA E      +     +    CP+  +  +  VL     +   A  + L+
Sbjct: 61  LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118

Query: 124 QYSIECLVRN 133
           + ++  + ++
Sbjct: 119 EMTLADVKKD 128


>gi|149178219|ref|ZP_01856813.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
 gi|148843001|gb|EDL57370.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
          Length = 149

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++   Y +R +   A          Q+++A  +   +L KI+  L + G++ + RG+ G
Sbjct: 10  ISQTEAYALRAMTCLAFRFPDYMTRDQLSQAAEVPHAYLPKIMLELNRTGLIRSQRGQNG 69

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G  L     +I++LDV+K+ +  F      + H+ D        L   L    +     L
Sbjct: 70  GYALIPSPQEISLLDVIKSVKAGFQ--RELSQHRPDTSNE-VRQLDEHLNHTFSLLETSL 126

Query: 123 TQYSIECL 130
            Q S+  +
Sbjct: 127 EQTSLADI 134


>gi|312131867|ref|YP_003999207.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
           byssophila DSM 17132]
 gi|311908413|gb|ADQ18854.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
           byssophila DSM 17132]
          Length = 136

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL   A + +       IA + CI+ + + + L  L +AG++ + +G+ GG +L + 
Sbjct: 9   ALHVLTLLAKNQEDWVSSDYIAGSICINPVMVRRELSSLNEAGLIYSRKGKDGGSKLSKK 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
            ++I++ +V  A + S  + +       +CP+       L  +  +A +     L + S+
Sbjct: 69  PEEISLGEVYLAVKNSEILGKKNKDTNSNCPVGSRINQKLEELSHEADSLLRQYLDKKSL 128

Query: 128 ECLVR 132
               +
Sbjct: 129 AEFAK 133


>gi|15612869|ref|NP_241172.1| hypothetical protein BH0306 [Bacillus halodurans C-125]
 gi|10172919|dbj|BAB04025.1| BH0306 [Bacillus halodurans C-125]
          Length = 143

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ R    + +L + A   +       IA +   + + +  I+  L KA ++    G
Sbjct: 1   MKQISSRFSIAVHILTFIASVREG-CTGDFIAGSVNSNPVIVRNIMGMLKKADLIGVRPG 59

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
             G   L + AD+IT+LDV +A +      +   F + KI+C +       L   L++A 
Sbjct: 60  VGGAY-LKKDADEITLLDVYRAVDVIGDDQLFG-FHNPKIECEVGRIIENTLREELKQAQ 117

Query: 116 NAFFDVLTQYSIECLVRNRS 135
            A    L   +I+ L+    
Sbjct: 118 EAMEQRLQLVTIQQLLDQPE 137


>gi|254489600|ref|ZP_05102802.1| DNA-binding protein [Roseobacter sp. GAI101]
 gi|214041770|gb|EEB82411.1| DNA-binding protein [Roseobacter sp. GAI101]
          Length = 149

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T+ +D  + VL++     D P    ++A++   +     + +  L  AG V++ RG  GG
Sbjct: 5   TRLSDV-LHVLLHL-NQVDEPVTSDRLAKSMGTNPAVFRRTMAGLRNAGYVQSGRGHGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDV 121
             L RP  +IT+LD+  A  +    A    S+  DC      +  L   + ++   F + 
Sbjct: 63  WSLVRPLSEITLLDIYTALGQPALFAIGMRSNNTDCLVERNVNAALKDTMAQSEALFLER 122

Query: 122 LTQYSIECLV 131
               ++E L+
Sbjct: 123 FGAITLESLL 132


>gi|153814767|ref|ZP_01967435.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756]
 gi|145847798|gb|EDK24716.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756]
          Length = 136

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I +       +D       +A +   + + + KILQ L  AG++E  RG  GGV + RP
Sbjct: 2   AIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60

Query: 70  ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123
            +QIT LDV KA E      +     +    CP+  +  +  VL     +   A  + L+
Sbjct: 61  LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118

Query: 124 QYSIECLVRN 133
           + ++  + ++
Sbjct: 119 EMTLADVKKD 128


>gi|167950664|ref|ZP_02537738.1| Iron-sulphur cluster assembly transcription factor IscR [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 108

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           RG  GG  L R A +I I +V+ A +ES     C  +H  +C     C    +       
Sbjct: 2   RGPGGGYSLGREAAEIFIGEVITAVDESMDTTRCHGAH--NCQNNDRCLTHDLWADLSEQ 59

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
            +  L + S++ L+ +R ++K++
Sbjct: 60  IYHYLNRISLQDLM-DRKAVKEV 81


>gi|326335576|ref|ZP_08201763.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692342|gb|EGD34294.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 143

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+  + Y I  ++Y AI++  +    + +IAE   I   FL KILQ L K   + + +G 
Sbjct: 2   LSNSSKYAINAVLYLAINSSVNNKKGVKEIAETLQIPTAFLAKILQVLAKKEAICSTKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG  L     +  +  +V   + S   A C    +  C     C +   ++     F +
Sbjct: 62  GGGFYLTEEKAKAPLASIVHYIDGSDKFAVCLLGIR-SCSEEIPCPMHYAVKPFKVRFLE 120

Query: 121 VLTQYSIE 128
            L ++SIE
Sbjct: 121 ELEKHSIE 128


>gi|313676819|ref|YP_004054815.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
           DSM 4126]
 gi|312943517|gb|ADR22707.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
           DSM 4126]
          Length = 144

 Score = 90.0 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +Y IR  +Y A          +  IA+     E F  KILQ LVK  +V +++G 
Sbjct: 2   FSKTCEYAIRATIYIANKSKEGTNVGLKDIAKNIDSPEAFTAKILQKLVKDDLVSSIKGP 61

Query: 61  RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  L      ++ ++DVV+  + S     C       C     C +    ++      
Sbjct: 62  NGGFSLSATQQKEVYLIDVVRCIDGSQTYDGC-GLGLSQCSEEKPCPIHFQFKEVRTKLK 120

Query: 120 DVLTQY 125
            +L   
Sbjct: 121 RMLENT 126


>gi|206969275|ref|ZP_03230230.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218235528|ref|YP_002368113.1| rrf2 family protein [Bacillus cereus B4264]
 gi|206736316|gb|EDZ53474.1| rrf2 family protein [Bacillus cereus AH1134]
 gi|218163485|gb|ACK63477.1| rrf2 family protein [Bacillus cereus B4264]
 gi|326941103|gb|AEA16999.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 137

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120
            D+I +  + + T E +    +C  S+         C + S +RK L A F        +
Sbjct: 68  LDEINLWHIYQITSEGALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGE 119

Query: 121 VLTQYSIECLVR 132
            L  Y+++ +V 
Sbjct: 120 YLKNYTMKEVVD 131


>gi|332687403|ref|YP_004457176.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
           35311]
 gi|332371412|dbj|BAK22367.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
           35311]
          Length = 141

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M         I ++M  A + +D   +  +I++   +S  +L KI + L  A ++ ++  
Sbjct: 1   MKFNNSFIQSIGIIMILAKLPDDGALKSQEISQRMNVSHSYLLKIAKKLKDAELINSIAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-------CGLTSVLR 112
           + GG  L +  D+I+ LD++ ATE      E    H ID  +  +         + ++  
Sbjct: 61  KTGGYVLNKSVDKISFLDILHATEGKNSFIEGIDFHPIDSIVSSNETVEEKRIVIRNIFS 120

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +A   + D+L  + I  ++  
Sbjct: 121 EAEKNYKDILNNHYISEIISQ 141


>gi|256839901|ref|ZP_05545410.1| predicted protein [Parabacteroides sp. D13]
 gi|256738831|gb|EEU52156.1| predicted protein [Parabacteroides sp. D13]
          Length = 152

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 3   LTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RG 59
           L+  T YG+    Y     HN+      +IAE   I+   L   L+ LV AGI+ +   G
Sbjct: 2   LSNPTRYGLIACRYLVWGWHNNVWLNAPEIAERYRINVRALSPALRRLVMAGILRSQCGG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALN 116
            R G  L R  +++T+L+VV+A E +F +  C       +  C    SC +  V R  L+
Sbjct: 62  TRPGFMLSRAPEEVTMLEVVRALEGNFRMDCCRTVLPCVQCSCE-TDSCRVCGVFRDMLD 120

Query: 117 AFFDVLTQYSIEC 129
                L+  S+E 
Sbjct: 121 ELRSRLSSVSLED 133


>gi|251799050|ref|YP_003013781.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247546676|gb|ACT03695.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 141

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++ R    + +L    I+N        IA +   +   + +I+  L KAG++ +  G  G
Sbjct: 2   ISSRFTVAVHILALVHINNGN-VTSEYIASSVNTNPAVIRRIMSMLSKAGLISSQPGVIG 60

Query: 63  GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            ++L  P   I++LDV KA E  E   +     +    C +       L+  LR A    
Sbjct: 61  -IKLQHPIADISLLDVYKAVELPEKKELFTLHQNTNEHCVVGKGIQQALSDPLRDAQQQM 119

Query: 119 FDVLTQYSIECLVRN 133
              L++ +IE +V+ 
Sbjct: 120 EQSLSRTTIEQIVKK 134


>gi|149370370|ref|ZP_01890059.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
           eubacterium SCB49]
 gi|149355921|gb|EDM44478.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
           eubacterium SCB49]
          Length = 144

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K   YGI+  +Y A  +       + +IAEA      F  K+LQ L KA I+   +G 
Sbjct: 2   FSKTCRYGIKATIYIAQQSQEGKRASLKEIAEAIDSPVAFTAKVLQFLSKAAIINATKGF 61

Query: 61  RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + +   ++IT+  +VKA +      EC     I C     C +            
Sbjct: 62  NGGYSIEKELLEKITLKQIVKAIDGDQLFEECALGLSI-CNANEPCPMHDQFVNIRAQLN 120

Query: 120 DVLTQYSIECLVRN 133
           + L   ++  +V+ 
Sbjct: 121 NTLAASNLLSVVKE 134


>gi|16080810|ref|NP_391638.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311722|ref|ZP_03593569.1| hypothetical protein Bsubs1_20306 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316048|ref|ZP_03597853.1| hypothetical protein BsubsN3_20217 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320959|ref|ZP_03602253.1| hypothetical protein BsubsJ_20160 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325244|ref|ZP_03606538.1| hypothetical protein BsubsS_20326 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|6137293|sp|P71047|YWGB_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywgB
 gi|1561569|emb|CAB02493.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636294|emb|CAB15785.1| putative transcriptional regulator [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291486345|dbj|BAI87420.1| hypothetical protein BSNT_05747 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 156

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 57/116 (49%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
                I++   +S  +L K+++ LV+AG+ E++ G +GG  L +P   IT+ DV +A E 
Sbjct: 26  LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
              + +     +        C L +V+ +  + + +++ + S++ ++     +  +
Sbjct: 86  RGSMYQGKGLLQSVFEGESHCVLETVMAEIEDKWSNLMREESLQHVMDRVGELYDL 141


>gi|311745248|ref|ZP_07719033.1| Rrf2 family protein [Algoriphagus sp. PR1]
 gi|126577775|gb|EAZ81995.1| Rrf2 family protein [Algoriphagus sp. PR1]
          Length = 136

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I +L   A   +       IA +  I+ + + K +  L KAG+VE+ +G+ GG +L + 
Sbjct: 9   AIHILTLLADSEEEWMSSDWIAGSININPVMVRKEIGVLTKAGLVESRKGKVGGSKLAKR 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
           +  I + ++  A + S  + +      + CP+  +    L S+  +  N+  D L   ++
Sbjct: 69  SSDIRLDEIYLAVKNSDVLGKKNLKPNVLCPIGKNINQKLGSLFSEIDNSVIDELHGKTL 128

Query: 128 ECLVRN 133
           E  V+ 
Sbjct: 129 ENFVKK 134


>gi|307702099|ref|ZP_07639106.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
 gi|307707432|ref|ZP_07643914.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
 gi|322377393|ref|ZP_08051884.1| Rrf2 family protein [Streptococcus sp. M334]
 gi|307616384|gb|EFN95575.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
 gi|307616586|gb|EFN95776.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
 gi|321281593|gb|EFX58602.1| Rrf2 family protein [Streptococcus sp. M334]
          Length = 145

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139
               A    L Q S+E +V +  S  K
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAESQMK 144


>gi|295690375|ref|YP_003594068.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295432278|gb|ADG11450.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 139

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T+ +D  + VL++ A   D P     +A++   +     + +  L +AG V + +G  GG
Sbjct: 5   TRLSDV-LHVLLHMA-QVDQPLTSEVLAKSMGTNPAVFRRTMAGLREAGYVRSGKGHGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121
            RL RP DQIT+L + +A       A  + S   DC +    +  L+  + +A   F + 
Sbjct: 63  WRLGRPLDQITLLAIYEALNRPRLFAIGYRSDHPDCLIEQNVNAALSETMAQAEALFIER 122

Query: 122 LTQYSIECL 130
             Q +++ L
Sbjct: 123 FGQVTLDQL 131


>gi|114327571|ref|YP_744728.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
 gi|114315745|gb|ABI61805.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
          Length = 149

 Score = 89.6 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            I V++    H         + IAE   ++   +  +LQ L +AG++E+VRG RGG RL 
Sbjct: 11  AISVMLDVGFHGSRTNTVSAADIAERIGLARRGMEPLLQSLSRAGLLESVRGPRGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   I + D+V     +  VA+    H+     +    +  +  +        L   ++
Sbjct: 71  RPKRDIRVSDIV-----AVAVADDGEGHEGPTGRLQVAVVDRLWTELEETVRAQLAAITL 125

Query: 128 ECLVRNRSS 136
           + L++  ++
Sbjct: 126 DDLLKRAAA 134


>gi|163789536|ref|ZP_02183974.1| Rrf2 family protein [Carnobacterium sp. AT7]
 gi|159875068|gb|EDP69134.1| Rrf2 family protein [Carnobacterium sp. AT7]
          Length = 156

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVR 58
           M LTK  +  + +L   +  +++    S +  +     S  ++ KI++ LV +G+  ++ 
Sbjct: 1   MKLTKGLEQAVCILAMLSTQDNHILITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111
           G  GG  L +  ++I +L++V+A E           + + F+             LT+  
Sbjct: 61  GSNGGFMLAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDIGEPASNGEK-MLTTTF 119

Query: 112 RKALNAFFDVLTQYSIECLV 131
            +A   +   L Q ++  L+
Sbjct: 120 GEADKRYTSFLEQQTLNQLI 139


>gi|42521817|ref|NP_967197.1| hypothetical protein Bd0184 [Bdellovibrio bacteriovorus HD100]
 gi|39574347|emb|CAE77851.1| hypothetical protein with transcriptional regulator domain
           [Bdellovibrio bacteriovorus HD100]
          Length = 151

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLV-KAGIVETVRG 59
            + ++ +Y +  L Y +           +++++         +++Q +  K GI+    G
Sbjct: 3   KINRKLEYALMALKYMSQKIPGELTTAKEVSDSFHTPFDATARVMQQMAQKGGILRAEYG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG ++ +   +++I D+V+  E    + +C    +  C + G+C + S +    +   
Sbjct: 63  ANGGYQITKDLAKVSIHDLVEVIEGPTALVKCLH-KEAPCEIQGTCNIVSPITALNDRLT 121

Query: 120 DVLTQYSIECLVRNRSSI 137
           D     S++ L+  R ++
Sbjct: 122 DFYKSLSLKELLVERMAM 139


>gi|116873720|ref|YP_850501.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742598|emb|CAK21722.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 156

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
           M L+K  D    ++        D P     I       S  ++ KIL+ LV +G++ +V 
Sbjct: 1   MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSSSYISKILRKLVVSGLINSVS 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESF------FVAECFASHKIDCPLVGSCGLTSVLR 112
           G  GG  L +  ++I +LD+V+A E          +     S   +    G   +TS  R
Sbjct: 61  GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120

Query: 113 KALNAFFDVLTQYSIECLVRN 133
            A   + + L    +  LV  
Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141


>gi|188997194|ref|YP_001931445.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932261|gb|ACD66891.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 142

 Score = 89.2 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           IR L+Y AI+ +     + +IAE   +   +L K +Q LVK+GI+E+ RG +GG+   +P
Sbjct: 10  IRALIYLAINQEKNYVSVKEIAEKLNLPFHYLAKNVQKLVKSGILESYRGPKGGIVFKQP 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            + I I+D++K+ ++      C    + +C     C + +      N  ++ L   S++ 
Sbjct: 70  IESIKIIDIIKSLDDDRLFKSCILGFE-ECSDENPCAIHNRWVVERNHLYN-LFNTSLKD 127

Query: 130 LVRN 133
           +V +
Sbjct: 128 IVED 131


>gi|226311119|ref|YP_002771013.1| hypothetical protein BBR47_15320 [Brevibacillus brevis NBRC 100599]
 gi|226094067|dbj|BAH42509.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 145

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L   A   ++      IA+  C +   + KI+  L K   V+T  G  GG  L   
Sbjct: 8   AVHSLALLAHIPEHMASSELIAKNVCTNPARIRKIMSILRKNEFVKTKEGIGGGYILACD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLTQ 124
            +++T+ ++ ++    +     C    +  C +  +  +  V+     +A   F   L Q
Sbjct: 68  PNEVTLAEIYRSISNGTLKPHWCSGDPQEACQVSAN--MHGVMDQIFTEAEMYFTKYLEQ 125

Query: 125 YSIECLVRN 133
            +I+ ++  
Sbjct: 126 ITIQTVLDK 134


>gi|270283926|ref|ZP_06193753.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277715|gb|EFA23569.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093]
          Length = 156

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + V++   +++ D+    + +A++   + + + +++Q L    ++   RG
Sbjct: 15  MQISSRFTMAVHVMVAIDVYSSDHKVTSTFLAKSVNANPVIIRRLIQQLKNDDLITVTRG 74

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113
             GG  L R    IT+LD+  A E  +   +     +     P+     +  V    L +
Sbjct: 75  A-GGAVLARDPQDITLLDIFDAVEAVDDAGLFNFHDNPGRSEPVGRH--IHDVLDVRLDR 131

Query: 114 ALNAFFDVLTQYSIECLVRN 133
              A    L   ++  L ++
Sbjct: 132 VHAAMERELQSMTVADLAQH 151


>gi|322516853|ref|ZP_08069753.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
 gi|322124613|gb|EFX96086.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
           ATCC 49124]
          Length = 143

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +AE+   +  ++ K++  L  AG++++ +G+ G  
Sbjct: 3   TKFSVALHILTMISESKET-LSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120
           +  +    IT+L++  AT+E     +     +  +DCP+       ++ +   A      
Sbjct: 61  QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFASAEAQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 ELAHQTLEDVIDN 133


>gi|320450833|ref|YP_004202929.1| BadM/Rrf2 family transcriptional regulator [Thermus scotoductus
           SA-01]
 gi|320151002|gb|ADW22380.1| transcriptional regulator, BadM/Rrf2 family [Thermus scotoductus
           SA-01]
          Length = 139

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
            +     ++IA        F+ K+L  L KAG+VE+  GR GGV L  P + IT+L V++
Sbjct: 21  EEPGLSAAEIAAKLKAPPAFMAKVLSKLAKAGLVESRMGRAGGVWLKAPPEGITLLKVME 80

Query: 81  ATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           +      +  C    +  CP     G C L   L +        L   +++ L+   S 
Sbjct: 81  SLSGPVALDLCATLKR--CPTEERRGFCYLKPNLVRMNQEIRKALEGLTLKDLLPEASK 137


>gi|309779547|ref|ZP_07674308.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921788|gb|EFP67424.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
          Length = 145

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L   A   + P   S IA +   +   + +++  L  AG V +  G 
Sbjct: 1   MSTSSRFAVAVHILTLLAS-AEGPVPSSLIAGSVGTNPALIRRLVAQLADAGFVTSQMGA 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
            GG  L RPAD+IT+LDV +  E    +A    +    C +     +T VL +   
Sbjct: 60  TGGATLARPADRITLLDVFRVVEAPVLIALPPNAPNPACEVGRE--ITGVLERVTE 113


>gi|319653880|ref|ZP_08007974.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
 gi|317394416|gb|EFV75160.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
          Length = 137

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +    I+E+  +  + + K+L  L K G +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQLDRMSTSDAISESAGVHPVRIRKVLSLLKKHGFIKSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYS 126
             ++ + D+ K T E +    +C  S++  C +  +    L ++   A     + L  Y+
Sbjct: 68  LSEVNLWDIYKITSEGALQP-KCPDSNEA-CVVGANMQRVLINIFLGAEEHLGEYLKHYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 LKNIVD 131


>gi|322417915|ref|YP_004197138.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
 gi|320124302|gb|ADW11862.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
          Length = 149

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L K + + +  ++  A           IA+   IS   L KI++ LV  G+V+ VRG 
Sbjct: 1   MKLNKASLFALIAVLELASDPKQQKSTLDIADKYGISTHHLAKIMRNLVHHGLVQAVRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG      A + T+LDVV   E    V +       DC +     + + L+   N   +
Sbjct: 61  GGGYTFSGNAKRTTLLDVVMMFETLESVLDI----PNDC-ITEERPIVAELQAITNEIDN 115

Query: 121 ----VLTQYSIE 128
               VL   ++E
Sbjct: 116 LTKVVLETITLE 127


>gi|321313316|ref|YP_004205603.1| putative transcriptional regulator [Bacillus subtilis BSn5]
 gi|320019590|gb|ADV94576.1| putative transcriptional regulator [Bacillus subtilis BSn5]
          Length = 156

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 57/116 (49%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
                I++   +S  +L K+++ LV+AG+ E++ G +GG  L +P   IT+ DV +A E 
Sbjct: 26  LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
              + +     +        C L +V+ +  + + +++ + S++ ++     +  +
Sbjct: 86  RGSMYQGKGLLQSVFEGESQCVLETVMAEIEDKWANLMREESLQHVMDRVGELYDL 141


>gi|289167495|ref|YP_003445764.1| hypothetical protein smi_0647 [Streptococcus mitis B6]
 gi|288907062|emb|CBJ21896.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 145

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGRENKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139
               A    L Q S+E +V +  S  K
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAESQMK 144


>gi|307323805|ref|ZP_07603014.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890254|gb|EFN21231.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 143

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  ++    +      QIA +   + + + ++L  L + G+V++ RG   G  L
Sbjct: 10  AAHALTWIGLYQRRGHDVATSEQIATSVNTNPVVIRRLLSELRRTGLVDSRRGAGAGWTL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            R    IT+LDV +A E     A   ++   +C +    G  LT+V  +        L +
Sbjct: 70  SRDLAAITLLDVYEAVEPGPVFALHRSAPDPECVVGHGIGPALTAVYGEIEATLRRELAR 129

Query: 125 YSIECLVRN 133
            ++E ++R+
Sbjct: 130 TTLEDVLRD 138


>gi|299822833|ref|ZP_07054719.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816362|gb|EFI83600.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 188

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L    +  I +L+     +   P +   I+E   IS+ +L K+++ LV AG+V +  G
Sbjct: 32  MKLKNGIEQTICILIMLETQDKAKPLKSYTISERLGISDSYLKKVMRQLVVAGLVTSEAG 91

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-----IDCPLVGSCGLTSVLRKA 114
           + GG  L + A+  T+LD+ +A E                   D        + +V  +A
Sbjct: 92  KDGGFILAKKAEDFTMLDIYEAIEGKESFIHSTNLAAKVFLYEDIIEAKESEILNVFFEA 151

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
              F   L QY    L+ N   I K
Sbjct: 152 EELFKIRLGQYKFSQLLMNTEQINK 176


>gi|116052211|ref|YP_788945.1| hypothetical protein PA14_09960 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387274|ref|ZP_06876773.1| hypothetical protein PaerPAb_04052 [Pseudomonas aeruginosa PAb1]
 gi|115587432|gb|ABJ13447.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 142

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H + P     IA+    + + + + +  L   G V + +G R
Sbjct: 6   RLSRM----LHVLIHMARH-EGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117
           GG RL +P   IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A    
Sbjct: 61  GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118

Query: 118 FFDVLTQYSIECLVRN 133
             + L   ++E L   
Sbjct: 119 LLERLGSVTLEQLASE 134


>gi|30021504|ref|NP_833135.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228973382|ref|ZP_04133970.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
 gi|29897059|gb|AAP10336.1| RRF2 family protein [Bacillus cereus ATCC 14579]
 gi|228786362|gb|EEM34353.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
          Length = 131

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 2   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 61

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120
            D+I +  + + T E +    +C  S+         C + S +RK L A F        +
Sbjct: 62  LDEINLWHIYQITSEGALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGE 113

Query: 121 VLTQYSIECLVR 132
            L  Y+++ +V 
Sbjct: 114 YLKNYTMKEVVD 125


>gi|225861464|ref|YP_002742973.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229231|ref|ZP_06962912.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254514|ref|ZP_06978100.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503378|ref|YP_003725318.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727494|gb|ACO23345.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238973|gb|ADI70104.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389821|gb|EGE88166.1| RRF2 family protein [Streptococcus pneumoniae GA04375]
          Length = 145

 Score = 89.2 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + KIL  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139
                    L Q S+E +V +  S  K
Sbjct: 118 RIQLTMEAELGQISLEKVVADAESQMK 144


>gi|184155425|ref|YP_001843765.1| transcription regulator [Lactobacillus fermentum IFO 3956]
 gi|183226769|dbj|BAG27285.1| transcription regulator [Lactobacillus fermentum IFO 3956]
          Length = 149

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R   GI +L +  ++ +       ++ +  IS + + +++  L +AG+V+T +G 
Sbjct: 1   MRASTRFSDGIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
               RL R   +IT+ DV  A E       +          C + G     L  V ++A 
Sbjct: 60  TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGHIQPILAEVYQEAQ 119

Query: 116 NAFFDVLTQYSIECLVRN 133
            A        ++  +V  
Sbjct: 120 AAAMIRFNNVTVADIVDQ 137


>gi|15901472|ref|NP_346076.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4]
 gi|15903520|ref|NP_359070.1| Rrf2 family protein [Streptococcus pneumoniae R6]
 gi|111657543|ref|ZP_01408284.1| hypothetical protein SpneT_02001265 [Streptococcus pneumoniae
           TIGR4]
 gi|116515825|ref|YP_816905.1| Rrf2 family protein [Streptococcus pneumoniae D39]
 gi|148984068|ref|ZP_01817363.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|148988679|ref|ZP_01820112.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|148997684|ref|ZP_01825248.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|149001909|ref|ZP_01826863.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|149006703|ref|ZP_01830389.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|149011509|ref|ZP_01832756.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|149021274|ref|ZP_01835520.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|168483494|ref|ZP_02708446.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|168487275|ref|ZP_02711783.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00]
 gi|168491484|ref|ZP_02715627.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04]
 gi|168493534|ref|ZP_02717677.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06]
 gi|168575177|ref|ZP_02721140.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|169832589|ref|YP_001695027.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6]
 gi|182684580|ref|YP_001836327.1| rrf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|194396960|ref|YP_002038252.1| RRF2 family protein [Streptococcus pneumoniae G54]
 gi|221232378|ref|YP_002511531.1| transcriptional regulator protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225857253|ref|YP_002738764.1| Rrf2 family protein [Streptococcus pneumoniae P1031]
 gi|225859392|ref|YP_002740902.1| Rrf2 family protein [Streptococcus pneumoniae 70585]
 gi|237649186|ref|ZP_04523438.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974]
 gi|237822263|ref|ZP_04598108.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|303253989|ref|ZP_07340109.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae BS455]
 gi|303258562|ref|ZP_07344542.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262652|ref|ZP_07348592.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263591|ref|ZP_07349513.1| rrf2 family protein [Streptococcus pneumoniae BS397]
 gi|303266965|ref|ZP_07352840.1| rrf2 family protein [Streptococcus pneumoniae BS457]
 gi|303269871|ref|ZP_07355615.1| rrf2 family protein [Streptococcus pneumoniae BS458]
 gi|307068264|ref|YP_003877230.1| putative transcriptional regulator [Streptococcus pneumoniae AP200]
 gi|307127846|ref|YP_003879877.1| RRF2 family protein [Streptococcus pneumoniae 670-6B]
 gi|14973126|gb|AAK75716.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4]
 gi|15459135|gb|AAL00281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076401|gb|ABJ54121.1| Rrf2 family protein [Streptococcus pneumoniae D39]
 gi|147756183|gb|EDK63225.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|147759718|gb|EDK66708.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147761618|gb|EDK68582.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147764499|gb|EDK71430.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|147923357|gb|EDK74470.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147925880|gb|EDK76955.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147930375|gb|EDK81359.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|168995091|gb|ACA35703.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172043161|gb|EDT51207.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|182629914|gb|ACB90862.1| rrf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|183569828|gb|EDT90356.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00]
 gi|183574285|gb|EDT94813.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04]
 gi|183576253|gb|EDT96781.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06]
 gi|183578739|gb|EDT99267.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|194356627|gb|ACF55075.1| RRF2 family protein [Streptococcus pneumoniae G54]
 gi|220674839|emb|CAR69413.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225722037|gb|ACO17891.1| Rrf2 family protein [Streptococcus pneumoniae 70585]
 gi|225725981|gb|ACO21833.1| Rrf2 family protein [Streptococcus pneumoniae P1031]
 gi|301800456|emb|CBW33090.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae OXC141]
 gi|301802339|emb|CBW35093.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae INV200]
 gi|302599077|gb|EFL66103.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae BS455]
 gi|302636208|gb|EFL66703.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302640063|gb|EFL70518.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302640606|gb|EFL71009.1| rrf2 family protein [Streptococcus pneumoniae BS458]
 gi|302643482|gb|EFL73754.1| rrf2 family protein [Streptococcus pneumoniae BS457]
 gi|302646629|gb|EFL76854.1| rrf2 family protein [Streptococcus pneumoniae BS397]
 gi|306409801|gb|ADM85228.1| Predicted transcriptional regulator [Streptococcus pneumoniae
           AP200]
 gi|306484908|gb|ADM91777.1| RRF2 family protein [Streptococcus pneumoniae 670-6B]
 gi|332072803|gb|EGI83284.1| RRF2 family protein [Streptococcus pneumoniae GA17545]
 gi|332073970|gb|EGI84448.1| RRF2 family protein [Streptococcus pneumoniae GA41301]
 gi|332199666|gb|EGJ13741.1| RRF2 family protein [Streptococcus pneumoniae GA41317]
 gi|332200197|gb|EGJ14270.1| RRF2 family protein [Streptococcus pneumoniae GA47368]
 gi|332201063|gb|EGJ15134.1| RRF2 family protein [Streptococcus pneumoniae GA47901]
          Length = 145

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + KIL  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139
                    L Q S+E +V +  S  K
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144


>gi|226227480|ref|YP_002761586.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226090671|dbj|BAH39116.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 146

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+   ++ +R ++  A H +        +A+       +L K L  L KAG+V + RG  
Sbjct: 2   LSATAEHAMRAVLLLARHGNATALSADAMADQLGAPRNYLAKTLNALAKAGVVHSARGAA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L  P D +T+  ++   ++   V  C   +   C  +  C L       +      
Sbjct: 62  GGFTLAVPPDVLTVQRIIAPFDDHSRVPACLLRNHA-CDSLNPCALHDRWNAIVGYAGRQ 120

Query: 122 LTQYSIECLVRN 133
               ++  L+ +
Sbjct: 121 FAVTTVADLLSD 132


>gi|167621776|ref|YP_001676561.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167351517|gb|ABZ74247.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 141

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G+ ++    +H D     S I E+       +  +L  L KAG+V T RGR G   L R 
Sbjct: 11  GVHIMQVLHVHADRKITSSFITESVNTDAGSVRLVLSKLAKAGLVTTTRGRGGSSALARA 70

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
           AD IT+LD+ +AT      A      +  C +       ++ VL     AF   L +  +
Sbjct: 71  ADTITMLDIYRATAAPAVFAVHGHPVEKTCVVSTHHKKTMSRVLEDCQGAFEASLARTRL 130

Query: 128 ECLVR 132
             +V 
Sbjct: 131 SDVVE 135


>gi|270293196|ref|ZP_06199407.1| Rrf2 family protein [Streptococcus sp. M143]
 gi|270279175|gb|EFA25021.1| Rrf2 family protein [Streptococcus sp. M143]
          Length = 145

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R      +L+  A+           +A +  ++ + + K L  L  A ++   RG
Sbjct: 1   MQISSRFTIATHMLIIIALEGKKTKVTSDFLAASVGVNPVIIRKTLSQLKNAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
             GG  + +    I++ DV +A E   +S  +     +   +CP+  +  +  VL     
Sbjct: 61  -TGGTEILKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHEVLDQKLL 117

Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
               A  + L Q S+  +V +  +
Sbjct: 118 DIQEAMENQLRQTSLAQVVADAEA 141


>gi|307709575|ref|ZP_07646029.1| transcriptional regulator family protein [Streptococcus mitis
           SK564]
 gi|307619706|gb|EFN98828.1| transcriptional regulator family protein [Streptococcus mitis
           SK564]
          Length = 145

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117

Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139
               A    L Q S+E +V +  S  K
Sbjct: 118 RIQLAMETELGQTSLEQVVADAESQMK 144


>gi|170697290|ref|ZP_02888384.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|170137910|gb|EDT06144.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
          Length = 146

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L  +G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++  +    +C +  +    L++ L++A     
Sbjct: 61  GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFDEVTLGMLSRD 134


>gi|115360049|ref|YP_777187.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285337|gb|ABI90853.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
          Length = 146

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA     + + + ++L  L  +G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDSGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++  +    +C +  +    L++ L++A     
Sbjct: 61  GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFGEVTLGMLSRD 134


>gi|284048055|ref|YP_003398394.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
 gi|283952276|gb|ADB47079.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
          Length = 144

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +    I +L   +    D+      +A +   + + +  ++  L KAG++   RG
Sbjct: 1   MQVSTKFTIAIHILAAASYFGKDHKVTSEFLAGSIGCNPVIVRNLMMDLKKAGLISVRRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALN 116
             GGV + RP DQIT  DV  A E     +     +    CP+  +    L   L     
Sbjct: 61  P-GGVEVTRPLDQITFRDVYDAVETRKDRLFNFHENPNPLCPVGRNIHQALDGKLLDIQK 119

Query: 117 AFFDVLTQYSIECLVRN 133
            F + L  +++  +V +
Sbjct: 120 QFQEDLRGHTLAEVVGD 136


>gi|187777108|ref|ZP_02993581.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
           15579]
 gi|187774036|gb|EDU37838.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
           15579]
          Length = 125

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           + +        IA +   + + + +++  L +AG+V  + G  G   L +  DQIT+LDV
Sbjct: 1   MEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAGTGGAYLL-KDLDQITLLDV 59

Query: 79  VKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN- 133
            +A +  +   + +   S  I+CP+  +    +  VL  A  A   VL   ++E +V   
Sbjct: 60  YRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQEAMEQVLENVTMEYIVTGI 119

Query: 134 RSSIKK 139
           R  IKK
Sbjct: 120 RKKIKK 125


>gi|307707011|ref|ZP_07643808.1| transcriptional regulator family protein [Streptococcus mitis
           SK321]
 gi|307617537|gb|EFN96707.1| transcriptional regulator family protein [Streptococcus mitis
           SK321]
          Length = 145

 Score = 88.9 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + + K L  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 ----AFFDVLTQYSIECLVRNRSSIKK 139
               A    L Q S+E +V +  +  K
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAETQMK 144


>gi|260662062|ref|ZP_05862958.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260553445|gb|EEX26337.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 149

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L +  ++ +       ++ +  IS + + +++  L +AG+V+T +G 
Sbjct: 1   MRASTRFSDAIHILCFLQVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
               RL R   +IT+ DV  A E       +          C + G     L  V ++A 
Sbjct: 60  TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPRCKVGGHIQPILAEVYQEAQ 119

Query: 116 NAFFDVLTQYSIECLVRN 133
            A        ++  +V  
Sbjct: 120 AAAMIRFNNVTVADIVDQ 137


>gi|167755758|ref|ZP_02427885.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
 gi|237734725|ref|ZP_04565206.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|167704697|gb|EDS19276.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
 gi|229382053|gb|EEO32144.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 146

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 1  MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +    +  I +L+  A  +++ P +   I+++  +S+ +L KI++ LV AG++ +  G
Sbjct: 1  MKVKNSVEQAICLLIIIAHSNDEKPLKSYNISDSLGVSDSYLKKIIRQLVVAGLITSEAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEE 84
          ++GGV L R  D+IT+LD+ +A E 
Sbjct: 61 KKGGVCLSRKPDKITLLDIFEAIEG 85


>gi|332653231|ref|ZP_08418976.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
 gi|332518377|gb|EGJ47980.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
          Length = 152

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +    +  L++              ++E+   + + +  IL  L KAG++   RG
Sbjct: 1   MQISMKCSIAVHCLIFIHEAKGIAKVTSGLLSESTGSNPVVIRNILSALKKAGLITVPRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCGLTSVL----RK 113
             GG  LC    QIT+  +  A E +    +       +  CP+  +  +  VL    +K
Sbjct: 61  -TGGAELCADPSQITLYQIYTALEPNGLSSLIGIHPCQQRPCPVAQN--IRRVLQTPYQK 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKK 139
             ++    +   +++ ++     + +
Sbjct: 118 IEDSIKQAMEGITLQSMIDEFEHLAR 143


>gi|227544764|ref|ZP_03974813.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908989|ref|ZP_07126452.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
           SD2112]
 gi|227185250|gb|EEI65321.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894396|gb|EFK87754.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
           SD2112]
          Length = 151

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 4/146 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I     P   + IA     S + + +++  L KAG++ TV G
Sbjct: 1   MKISTRFSDSIHILAFINICQGIIPLTSNNIASTIETSPVVVRRLMSALNKAGLINTVHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L +  + I++ DV  A E    +          C + G+    L    ++A  A
Sbjct: 61  AA-DPALAKSPENISLYDVFLAIEGDAHLFTIDERTNPQCIVGGNIQETLDGFYQQAETA 119

Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
               L + S++ ++      + + +A
Sbjct: 120 AKAKLARISLQDVIDTIRVKQALKDA 145


>gi|296535176|ref|ZP_06897398.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas
           cervicalis ATCC 49957]
 gi|296264504|gb|EFH10907.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas
           cervicalis ATCC 49957]
          Length = 154

 Score = 88.5 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 10  GIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            + +++  A H    + +    IA+    +   +  +LQ L +AGI+ + RG +GG RL 
Sbjct: 11  AVAIVLDVAFHAGRGSTVPAGDIADRLGEARRGIEPVLQALSRAGILGSTRGPKGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           R A  IT+ ++  A        +   +       +    L  + ++   A    L + +I
Sbjct: 71  RAARDITLAELAAAITGPDAPRDGDEADPAAPSPLQEKVLRPLWQELEAALLAQLGELTI 130

Query: 128 ECLVRN 133
             L+R 
Sbjct: 131 AELLRR 136


>gi|312862875|ref|ZP_07723115.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis
           F0396]
 gi|311101735|gb|EFQ59938.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis
           F0396]
          Length = 143

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +AE+   +  ++ K++  L  AG++++ +G+ G  
Sbjct: 3   TKFSVALHILTMISESKET-LSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120
           +  +    IT+L++  AT+E     +     +  +DCP+       ++ +   A      
Sbjct: 61  QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFVSAEAQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 ELAHQTLEDVIDN 133


>gi|329923736|ref|ZP_08279131.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
 gi|328941102|gb|EGG37404.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
          Length = 120

 Score = 88.1 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF-------- 92
           + KI+  L + GIV  V G  GG  L +PA QIT L+V++  E    + EC         
Sbjct: 1   MSKIMSKLRQDGIVRAVPGVNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLNSQQHR 60

Query: 93  -------ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
                  +    D P    C +  V+  A       L + +I+ ++ 
Sbjct: 61  LLTEEKPSDRNEDKPGACVCLVKQVMDGAERQLNQYLEEQTIQSVLD 107


>gi|325289388|ref|YP_004265569.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964789|gb|ADY55568.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 155

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    + +LM   A  + Y    S ++++  ++ + +  I   L KA I++   G
Sbjct: 1   MRASTRFAIAVHILMLTAAFQDKYKITSSMLSDSTGVNAVIIRNIFSKLKKAKIIQVSPG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
             G ++L +  +QI++ D+      EE   V     +   DCP+  S  +T +L K    
Sbjct: 61  TSG-IKLIKKPEQISLFDIYATVEIEEPINVLSIHQNIPCDCPIGIS--VTDILMKHFIT 117

Query: 114 ALNAFFDVLTQYSIECLVRN 133
           A  A  + L++ S+  L+  
Sbjct: 118 AATAMENELSKVSLLDLLNE 137


>gi|254254969|ref|ZP_04948286.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
 gi|124899614|gb|EAY71457.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
          Length = 146

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA     + + + ++L  L   G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSETIATMLGTNAVVVRRLLGGLRDCGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++  +    +C +  +    L++VL+ A  A  
Sbjct: 61  GGWALGVALDDITLLDVYRAVGEPPLFSDLVSEDTPECLVEQAVNAHLSAVLKDAEAALL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R 
Sbjct: 121 ARFGEVTLGMLSRE 134


>gi|255657056|ref|ZP_05402465.1| hypothetical protein CdifQCD-2_15486 [Clostridium difficile
           QCD-23m63]
 gi|296452113|ref|ZP_06893824.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296877469|ref|ZP_06901502.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
 gi|296259063|gb|EFH05947.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
 gi|296431481|gb|EFH17295.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
          Length = 145

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    +++L+   + +D       I+++   + + + ++   L +AGI+    GR
Sbjct: 1   MRMSTQFTVSVQMLLLIMVLDDRKVTSEMISKSTGGNPVMVRQLFGKLKEAGILNVSAGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L +   +I++ D+  A EE  S  + +        C +       L + L +A++
Sbjct: 61  -GATVLAKKPSEISLWDIYMAVEEYSSSELFKFHPKISEGCNIGRFFKEILGNHLDEAIH 119

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
           A  D +++ S+  L+    S+ K
Sbjct: 120 AMADKMSKVSLAQLLEEWESVNK 142


>gi|304385691|ref|ZP_07368035.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM
           20284]
 gi|304328195|gb|EFL95417.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM
           20284]
          Length = 160

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 17/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    I VL Y A +H+  P     IA +   +   + +I+  L KAG+++T  G
Sbjct: 3   MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 62

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           +     L R  +QI++LD+  + +E    + +       DC + G+      ++ ALNA 
Sbjct: 63  KP-QPALTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGN------IQDALNAQ 115

Query: 118 -------FFDVLTQYSIECLVRN 133
                    D + + ++  ++++
Sbjct: 116 YAHFQKVVQDEMAKTTLADVIQD 138


>gi|297561597|ref|YP_003680571.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846045|gb|ADH68065.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 150

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  ++    +      QIA +   + + + ++L  L KAG+ ++ RG   G  L
Sbjct: 17  AAHALTWIGLYQRRGHEVATSEQIATSVNTNPVVIRRLLAKLNKAGLADSRRGAGAGWML 76

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            R    IT+LDV +A E     A   A+   +C +    G  +T+V      A    L +
Sbjct: 77  ARDLAAITLLDVYQAIEPGPVFALHRATPDPECVVGHGIGPAMTAVYDGVEAALRGELAK 136

Query: 125 YSIECLVRN 133
            ++E ++R+
Sbjct: 137 TTLEDVLRD 145


>gi|171317789|ref|ZP_02906970.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171097073|gb|EDT41928.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 146

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA     + + + ++L  L   G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDCGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++  +    +C +  +    L++ L++A     
Sbjct: 61  GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFGEVTLGMLSRD 134


>gi|118588622|ref|ZP_01546030.1| Transcriptional regulator family protein [Stappia aggregata IAM
           12614]
 gi|118438608|gb|EAV45241.1| Transcriptional regulator family protein [Stappia aggregata IAM
           12614]
          Length = 137

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++     D P    QI +    +   + + +  L +AG V   +G  GG  L +  
Sbjct: 2   LHVLLHLDQTQD-PVTSDQIGKMLNTNPSLVRRTMAGLREAGFVGATKGHGGGWVLAKNL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIE 128
           D I++ +V  A       A   ++    C L    +   ++ L  A   F + L Q ++ 
Sbjct: 61  DSISLAEVYAALGSPQLFAVGKSADAPTCLLEQAANRATSAALEAARETFQEKLGQVTVA 120

Query: 129 CLVRNRSS 136
            LVR  + 
Sbjct: 121 DLVRPHAQ 128


>gi|325000811|ref|ZP_08121923.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 158

 Score = 88.1 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 10  GIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            ++ ++Y AI  +        +Q+AEA   +   + K+L PL   G++ + +GR GG RL
Sbjct: 19  ALQAMLYLAIAAERDEPTTSSAQLAEALGTNPSLVRKLLVPLGAGGLIVSTKGRTGGTRL 78

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            RPA++IT+ ++ +       +  C    +  C   G+       +  +   A  + L  
Sbjct: 79  SRPAERITLAEIYRCAVGEKPLWACRPESEHVCLDTGNAARYFAELTAETERAVLESLEH 138

Query: 125 YSIECLVRNRSSIKK 139
            ++   V     + +
Sbjct: 139 RTLAGAVAEMRRLDR 153


>gi|315497324|ref|YP_004086128.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315415336|gb|ADU11977.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 163

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D      ++A+    + + + +++  L   G+V++ +G  GG RL RP 
Sbjct: 11  LHVLLHLA-DTDKAVTSERLAQMMSTNPVVIRRVMAGLRAQGLVQSEKGHGGGWRLGRPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            ++T+ +V +A  E    A    +   +C +  +    + + L +A         + ++ 
Sbjct: 70  KEVTLAEVYRAVGEPELFAMGNRTENPECLVEQAVNAAIDNALSEAEALLMQRFGEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 MLAAD 134


>gi|312960535|ref|ZP_07775041.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311285061|gb|EFQ63636.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 145

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + + L  L + G V + +G +
Sbjct: 6   RLSRM----LHVLIHMGRHEER-ATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L +P  +IT+LD+  A       A   ++    C +  +    LT    +A     
Sbjct: 61  GGWSLGKPLSEITLLDIHNALGTPSIFAIGLSTDHPQCLVEQAVNAALTDAFEQAQALLL 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L + ++  L  N     ++
Sbjct: 121 KRLGKVTLAQLAENFDERYRV 141


>gi|15891276|ref|NP_356948.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
           C58]
 gi|15159651|gb|AAK89733.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
           C58]
          Length = 173

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHL ++T+    +L  CA        + ++A+    ++   ++++  L + G++++ RG 
Sbjct: 1   MHLKRQTEIAFGILAVCARQEGEIISVQKVAQEIGATKDHTYQVVALLARNGLLQSERGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117
            GG++L R    + + +V++  +              D          + L + ++    
Sbjct: 61  GGGLKLARDPRSVKLAEVLRLVQPELL------GEGADVLSSPQSETEAFLGRIVSTTSS 114

Query: 118 -FFDVLTQYSIECLVRNRSSIK 138
            F  +L ++++  L+   S+++
Sbjct: 115 FFARLLDRFTVADLIAPESNLR 136


>gi|218515594|ref|ZP_03512434.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 76

 Score = 87.7 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LTK+  YG++ L+  A +       I+ +A    I + FL  IL  L   GI+ + +G  
Sbjct: 2  LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61

Query: 62 GGVRLCRPADQITIL 76
          GG  L RPA +I I 
Sbjct: 62 GGYSLSRPASEIRIG 76


>gi|121607635|ref|YP_995442.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
           eiseniae EF01-2]
 gi|121552275|gb|ABM56424.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
           eiseniae EF01-2]
          Length = 174

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK       +L +   H         IA+   ++   + +I+  LV+AG++ + RG 
Sbjct: 1   MKSTKFVT-ACYILSFVTYHGPDMIPTQTIAKWVNVNASRVRQIVARLVRAGLLASTRGG 59

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKAL 115
            GGV + R    IT+LDV  A  E+   +  C  +   D      C + SVL     +  
Sbjct: 60  EGGVVIGRAPSDITLLDVFDAVAEQDTALF-CVDNPFSDWK--DRCRVHSVLTTMRGELE 116

Query: 116 NAFFDVLTQY 125
             F   L   
Sbjct: 117 RDFRSKLANT 126


>gi|303327292|ref|ZP_07357734.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863280|gb|EFL86212.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 181

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              D P   S++A    ISE F+ KI++ L   GIV+++RG  GG  L R  D +++ D+
Sbjct: 20  QAEDMPASASELAVCTGISEKFVQKIMRLLQSGGIVKSIRGIAGGHVLARNPDDVSLADI 79

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN-RSSI 137
           + A E    +     +    C  V           A  +  + L   ++  + ++  +S+
Sbjct: 80  IAAVEGGITLP--GVNSAAPCGRVA----LDAWADAARSLQNSLGSVTLGSVRQSCGASL 133

Query: 138 KKIFN 142
           + + +
Sbjct: 134 RAVLS 138


>gi|262281617|ref|ZP_06059391.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262256943|gb|EEY75687.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 67

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L K TDY +R+LMY A  +D P  I++IA+   +S+  L K++  + K   + T+RG+
Sbjct: 4  MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 63

Query: 61 RGGV 64
           GG+
Sbjct: 64 GGGI 67


>gi|304408323|ref|ZP_07389971.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342792|gb|EFM08638.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 149

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++ +  +      + +A        FL +I+  LV+AG+VE   GR GG  L + 
Sbjct: 17  AVHALVWLS-QSGCVVSSAMMAGQVNSHATFLRRIMVHLVQAGMVEAKEGRDGGYFLRKS 75

Query: 70  ADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG---------LTSVLRKALNAFF 119
              IT+ DV  A       ++C      +     G CG         L S++ +A     
Sbjct: 76  PADITLADVYMAV-----KSDCGTEQASVAADDEGGCGAAGQQLDSVLESIMGQAEQHTI 130

Query: 120 DVLTQYSIECLVRN 133
           D L Q++++ ++R 
Sbjct: 131 DYLRQFTVDDVMRQ 144


>gi|257468365|ref|ZP_05632459.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062638|ref|ZP_07927123.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313688314|gb|EFS25149.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 144

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T+ T+  I+ ++Y + +     +    I ++   S+ F+ K+L+PL  A IV   RG
Sbjct: 1   MKITQETNCAIKTILYLSTLQKGEISPAKTIGKSIGFSDKFVLKVLRPLTSANIVLPFRG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
             GG  L +  D+IT+ DV+ A +    +     +            + S+  +      
Sbjct: 61  VTGGYCLGKTTDKITLFDVIVAVQNDINILTVMKNMSKKDIKKDE--IFSIFDQIQELEK 118

Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
            +L + + + ++ N+ ++K I  
Sbjct: 119 KILKKITFDMIINNKVNLKNILE 141


>gi|104774105|ref|YP_619085.1| DeoR family transcriptional regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514174|ref|YP_813080.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423186|emb|CAI97984.1| Transcriptional regulator (DeoR family) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093489|gb|ABJ58642.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 153

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+        + IA +   S + + +++  L  AG ++T  G
Sbjct: 1   MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L R    I++L++  ATE    +         DC + G+    LT     A  A
Sbjct: 61  SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119

Query: 118 FFDVLTQYSIECLVR 132
              VL + S++ ++ 
Sbjct: 120 AEAVLGKISLQDVID 134


>gi|311030960|ref|ZP_07709050.1| transcriptional regulator, BadM/Rrf2 family protein [Bacillus sp.
           m3-13]
          Length = 137

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           TK     I+ L+  A +N+      ++AE      +FL KIL+ LVK  +++   GR GG
Sbjct: 8   TKWFSVAIQALVVLA-NNEGRCPSGELAEKLNSKSVFLRKILRHLVKTELIQAKEGRDGG 66

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKALNAFF 119
             L +   +I + +V  A +   F    F     +C         C L     +      
Sbjct: 67  YFLVKDPSEIKLSEVYDAMKAETFPKGFFNVESKECFASTTRESLCTLR---DEMEGWVV 123

Query: 120 DVLTQYSIECLVRN 133
             L Q +I  L++ 
Sbjct: 124 AGLEQKTIADLMKK 137


>gi|294650114|ref|ZP_06727497.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824021|gb|EFF82841.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 139

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A  N       +IA     + + + + +  L  AG++++V+G +GG  L    
Sbjct: 2   LHVLLHMARQN-KIFTSEEIAHMLSTNAVVVRRTMAGLKNAGLIQSVKGPKGGWHLIADL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           ++ T+LD+  A  E    A        +C    V +  L   +++A +     L   ++ 
Sbjct: 61  EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNAALEDAMQQAQDILLAKLKATTLA 120

Query: 129 CLVRNRSSIKK 139
            L      + +
Sbjct: 121 DLAYAFDQLYQ 131


>gi|120435754|ref|YP_861440.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117577904|emb|CAL66373.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 144

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGI+   Y A+ +       + +IA        F  KIL  L K  I+ +V+G 
Sbjct: 2   FSKACEYGIKASTYIALQSLEGQRVSLKEIAGEIDSPIAFTAKILHQLAKNDILVSVKGP 61

Query: 61  RGGVRLCRPADQ-ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + +     I +  +V A +       C      +C     C L        +   
Sbjct: 62  YGGFYIPKEKIDVIKLAAIVYAIDGDSVYTGCALGFN-ECNASKPCLLHDKFVGIRDELR 120

Query: 120 DVLTQYSIECL 130
           ++L   S+  L
Sbjct: 121 EMLQNTSLYEL 131


>gi|152987101|ref|YP_001346310.1| hypothetical protein PSPA7_0924 [Pseudomonas aeruginosa PA7]
 gi|150962259|gb|ABR84284.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 142

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H + P     IA     + + + + +  L   G V + +G R
Sbjct: 6   RLSRM----LHVLIHMARH-EGPATSEAIAHMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117
           GG RL +P   IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A    
Sbjct: 61  GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118

Query: 118 FFDVLTQYSIECLVRN 133
             + L   ++E L   
Sbjct: 119 LLERLGSVTLEQLASE 134


>gi|163857298|ref|YP_001631596.1| hypothetical protein Bpet2986 [Bordetella petrii DSM 12804]
 gi|163261026|emb|CAP43328.1| unnamed protein product [Bordetella petrii]
          Length = 148

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A   D P    +IA     +   + + +  L K G V++ +G  
Sbjct: 6   RLSRM----LHVLLHMA-RADQPMTSEEIARMLGTNAAVVRRTMAGLRKVGYVQSDKGHH 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
           GG R+ R  D IT+LDV +A       A        DC +    +  +   LR+A     
Sbjct: 61  GGWRMARGLDSITLLDVHRAVGGPRIFAIGADRENPDCAVERVVNDAIADALRQAEALLV 120

Query: 120 DVLTQYSIECL 130
             L   ++  L
Sbjct: 121 QRLGAVTLADL 131


>gi|172056218|ref|YP_001812678.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
           sibiricum 255-15]
 gi|171988739|gb|ACB59661.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
           sibiricum 255-15]
          Length = 160

 Score = 87.7 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +    +  +  ++    +          I++    S  +  K+L+ LV A ++ +V G
Sbjct: 1   MQMKTGVEQSVYAMLLLTFLPEKGVLPGEFISQQLGASPTYFQKLLRKLVSADLLISVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            +GG RL    + I + D+ +A E   S + +       +       C L+ ++ +A  +
Sbjct: 61  AKGGFRLKASPETIRVFDIYEAIEGKQSLYASSGVFEDLMGIQDQNICLLSDLMAEAEQS 120

Query: 118 FFDVLTQYSIECL 130
           +  +L + +I+ +
Sbjct: 121 WQSILKRETIDSI 133


>gi|289167407|ref|YP_003445676.1| transcriptional regulator [Streptococcus mitis B6]
 gi|307705473|ref|ZP_07642327.1| transcriptional regulator family protein [Streptococcus mitis
           SK597]
 gi|307707522|ref|ZP_07644004.1| YwnA [Streptococcus mitis NCTC 12261]
 gi|288906974|emb|CBJ21808.1| transcriptional regulator [Streptococcus mitis B6]
 gi|307616474|gb|EFN95665.1| YwnA [Streptococcus mitis NCTC 12261]
 gi|307620931|gb|EFO00014.1| transcriptional regulator family protein [Streptococcus mitis
           SK597]
          Length = 143

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  A ++ + +G+ G  
Sbjct: 3   TKFSVALHILTMISESKET-LSSQALAISVGTNASYIRKVIALLKNADLIHSQQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++T+L++  AT+E     +     +   DCP+       ++ +   A +    
Sbjct: 61  QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L   ++E ++ N
Sbjct: 121 ELANQTLEDVIDN 133


>gi|251795969|ref|YP_003010700.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
 gi|247543595|gb|ACT00614.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
          Length = 133

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           KR  +G++ L+  A   +     S+IAE        L KIL  LV+ GI+E  +GR GG 
Sbjct: 5   KRFGFGVQALIVLASQTE-LLTSSEIAERIHCEPTALRKILSQLVEGGIIEVKQGRTGGY 63

Query: 65  RLCRPADQITILDVVKATEESFFV----AECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           +L +  + +T+ +V K   E         +   +H     +  S     ++    +  + 
Sbjct: 64  QLAKRPELVTLREVYKTVHEEEPPWDRMLDTTGNHHFGKKVNES--FKQIMADISDQVYF 121

Query: 121 VLTQYSIECLVR 132
           VL  Y+I  L+ 
Sbjct: 122 VLGNYTISDLLD 133


>gi|237734275|ref|ZP_04564756.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382505|gb|EEO32596.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 131

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L   TDY IR+++Y AI  D   +  +++E   I +  +FKI + L    I+    G 
Sbjct: 1   MQLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGI 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
           +GG +L +    I+I  ++   E +  +  C    K  C      +C +  V       F
Sbjct: 60  QGGFKLKKQPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHF 118

Query: 119 FDVLTQYSIECLV 131
            + L +  I  L+
Sbjct: 119 EEYLKKIKILDLI 131


>gi|307730053|ref|YP_003907277.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1003]
 gi|307584588|gb|ADN57986.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1003]
          Length = 151

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QI++LDV +A +++   A         C +  +    L  V+ +A  A 
Sbjct: 61  GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGVIDEAQQAM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L Q ++     +   +++
Sbjct: 121 EASLAQRTLADATADLHRVER 141


>gi|116333047|ref|YP_794574.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116098394|gb|ABJ63543.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
           ATCC 367]
          Length = 146

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L Y  I+ D+    + IA +   +   + +++  L +A ++ T +G 
Sbjct: 1   MRYSHKLSDAVHILAYIVIYRDHDLSSAAIAASVTSNPALVRRLMGALRRANLLATTQGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
               +L R    IT+LD+ +A E    +          C + G+    L +   +   A 
Sbjct: 61  AA-PKLARDPALITLLDIYRAVENPGDLLHVDEETNPKCIVGGNIQATLETAYSEVQQAA 119

Query: 119 FDVLTQYSIECLVRN 133
              + Q ++  L+ +
Sbjct: 120 ERQMQQITLASLITD 134


>gi|47097212|ref|ZP_00234776.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014426|gb|EAL05395.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 67

 Score = 87.3 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M +T +  YG+ + +  A    D P  +  IA+   +SE +L +++ PL  AGIV+++RG
Sbjct: 1  MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60

Query: 60 RRGGVRL 66
            GG  L
Sbjct: 61 AHGGYVL 67


>gi|170696438|ref|ZP_02887565.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
 gi|170138643|gb|EDT06844.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
           C4D1M]
          Length = 151

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QI++LDV +A +++   A         C +  +    L  ++ +A  A 
Sbjct: 61  GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L Q ++  
Sbjct: 121 EASLAQRTLAD 131


>gi|270290058|ref|ZP_06196284.1| transcription regulator [Pediococcus acidilactici 7_4]
 gi|270281595|gb|EFA27427.1| transcription regulator [Pediococcus acidilactici 7_4]
          Length = 168

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 17/143 (11%)

Query: 1   MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    I VL Y A +H+  P     IA +   +   + +I+  L KAG+++T  G
Sbjct: 11  MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 70

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           +     L R  +QI++LD+  + +E    + +       DC + G+      ++ ALNA 
Sbjct: 71  KP-QPALTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGN------IQDALNAQ 123

Query: 118 -------FFDVLTQYSIECLVRN 133
                    D + + ++  ++++
Sbjct: 124 YAHFQKVVQDEMAKTTLADVIQD 146


>gi|187923598|ref|YP_001895240.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Burkholderia phytofirmans PsJN]
 gi|187714792|gb|ACD16016.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           phytofirmans PsJN]
          Length = 151

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGAPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QIT+L+V +A +++   A         C +  +    L  ++ +A  A 
Sbjct: 61  GGGALLARAPEQITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L   ++  
Sbjct: 121 EAALDARTLAD 131


>gi|42526313|ref|NP_971411.1| hypothetical protein TDE0801 [Treponema denticola ATCC 35405]
 gi|41816425|gb|AAS11292.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
 gi|325473257|gb|EGC76452.1| hypothetical protein HMPREF9353_02247 [Treponema denticola F0402]
          Length = 144

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 6/143 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  +    I +L+      D        +AE+   + + + K++  L  AG++E  +G
Sbjct: 1   MQIGTKFSVSIHILLCVEFFKDKCKVTSDFLAESVKTNPVVIRKLMSALKNAGLIEITQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             GG+ L + A QI+ LD+  A E  +   + +   +   +CP+       L      A 
Sbjct: 61  -TGGIALKKKAAQISFLDIFNAVESIKDGKLFKIHDTPPNECPVAQKINFLLDGYFLDAQ 119

Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
                 L  ++++ ++     I+
Sbjct: 120 TTLEKKLNSFTLQSILNKIKDIQ 142


>gi|325291672|ref|YP_004277536.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
 gi|325059525|gb|ADY63216.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
           H13-3]
          Length = 152

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++   H +       IA     + + + + +  L + G V + +G  GG  L RP 
Sbjct: 11  LHILIHMEKH-EGAATSESIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGGWVLARPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            +IT+LD+ +A       +   A    +C +  +    L   + +A           ++ 
Sbjct: 70  SEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAETILLSRFGNITLS 129

Query: 129 CLVRN 133
            L   
Sbjct: 130 VLAEE 134


>gi|307151464|ref|YP_003886848.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
           7822]
 gi|306981692|gb|ADN13573.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
           7822]
          Length = 146

 Score = 87.3 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
             Y + VL+    H      I ++A    IS+ +L  I   L + G+++  +       L
Sbjct: 20  VKYALLVLLELVTHPSA--SIDEMATKYLISKPYLEWICANLQRGGLIDKPKEAEEIYAL 77

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
                QIT+LDVV+A E        F ++  D  L     +  +  +   A  + L QY+
Sbjct: 78  NFQPKQITLLDVVRAIETQANPVMGFETYSPDRRL-----IHQIWHEVRTAAQNTLQQYT 132

Query: 127 IECLVRNRSS 136
           +E L +  ++
Sbjct: 133 LEDLCQKPNA 142


>gi|312870588|ref|ZP_07730703.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
           PB013-T2-3]
 gi|311093903|gb|EFQ52232.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
           PB013-T2-3]
          Length = 154

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+    P     IA +   S + + +++  L K G++ETV G
Sbjct: 1   MRVSTRLSDSIHILAFLQIYRGKVPLTSENIAGSVETSPVVVRRLMSALRKGGLIETVLG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
                RL RPAD+I++ D+  A E     +         +C + G+    L    ++A  
Sbjct: 61  -FADPRLARPADEISLYDIYLAVEGPDRHLFAIDEKTAPECIVGGNIQATLAEYYQQAET 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   S++ ++ +
Sbjct: 120 AAQAKLAGISLQDVLDS 136


>gi|225855064|ref|YP_002736576.1| Rrf2 family protein [Streptococcus pneumoniae JJA]
 gi|225722419|gb|ACO18272.1| Rrf2 family protein [Streptococcus pneumoniae JJA]
 gi|301794623|emb|CBW37071.1| putative transcriptional regulator protein [Streptococcus
           pneumoniae INV104]
          Length = 145

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+           +A +  ++ + + KIL  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKKSKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTDIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139
                    L Q S+E +V +  S  K
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144


>gi|241666997|ref|YP_002985081.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862454|gb|ACS60119.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 151

 Score = 86.9 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H  +      IA+    + + + + +  L + G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREKGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
           GG  L RP  +IT+LDV +A  E    A   A  + +C +  +    L   +++A     
Sbjct: 61  GGWTLVRPLSEITLLDVYRAIGEPHLFAIGPADDQPECLVEQAVNVVLGDAMKEAEALLL 120

Query: 120 DVLTQYSIECLVRN 133
             L   +++ +  +
Sbjct: 121 QRLDSVTLDKIAAD 134


>gi|163785917|ref|ZP_02180365.1| transcriptional regulator, BadM/Rrf2 family protein
           [Flavobacteriales bacterium ALC-1]
 gi|159877777|gb|EDP71833.1| transcriptional regulator, BadM/Rrf2 family protein
           [Flavobacteriales bacterium ALC-1]
          Length = 144

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGI+  +Y A ++       + +IA+       F  KILQ LV+  I+ +V+G 
Sbjct: 2   FSKACEYGIKATIYIATNSYEKKRVSLKEIAKEIDSPVAFTAKILQDLVRHQIINSVQGA 61

Query: 61  RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + +     I +  +V A +     + C       C     C +    +       
Sbjct: 62  YGGFEIEKHKIPTIKLAQIVNAIDGDKIYSGCGLGLHT-CDEEHPCPVHDKFKIVRTELK 120

Query: 120 DVLTQYSIECLVRNRSS 136
           D+L   ++E L  +  S
Sbjct: 121 DMLENTNLEELALDIKS 137


>gi|116691671|ref|YP_837204.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|116649671|gb|ABK10311.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
          Length = 159

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L   G V++ +G  
Sbjct: 19  RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 73

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +  
Sbjct: 74  GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 133

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 134 ARFGEVTLGMLSRD 147


>gi|332885400|gb|EGK05649.1| hypothetical protein HMPREF9456_02451 [Dysgonomonas mossii DSM
           22836]
          Length = 136

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L+  +   D       +A +  I+ + + K L  L K  IV +  G+ GG  L RP
Sbjct: 9   SMHILVLLSKFPDELLSSDFLAGSMNINPVLVRKELSNLRKHNIVISKEGKNGGCMLARP 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125
           A++I I DV K       +    AS    CP+     +   L    ++A N     L   
Sbjct: 69  ANEIFISDVYKIVSTHSILGNELASPNPKCPVGKQ--INEHLYDLNKEAENIMISRLANQ 126

Query: 126 SIEC 129
           ++  
Sbjct: 127 TLAD 130


>gi|258541842|ref|YP_003187275.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632920|dbj|BAH98895.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635977|dbj|BAI01946.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639032|dbj|BAI04994.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642086|dbj|BAI08041.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645141|dbj|BAI11089.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648196|dbj|BAI14137.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651249|dbj|BAI17183.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654240|dbj|BAI20167.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
           3283-12]
          Length = 149

 Score = 86.9 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            + +++  A H         + IAE   ++   +  +LQ L ++G++E++RG RGG RL 
Sbjct: 11  AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   I+++D+++A   +   A       +   ++  C       K        +++ ++
Sbjct: 71  RPRRDISLVDIIEAVLNTDADANDGPQGALFQKVLAPC-----WDKFDQKLITQMSKTTL 125

Query: 128 ECLVRNRSS 136
           + LV+   S
Sbjct: 126 DDLVKQAES 134


>gi|312129124|ref|YP_003996464.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
           byssophila DSM 17132]
 gi|311905670|gb|ADQ16111.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
           byssophila DSM 17132]
          Length = 144

 Score = 86.5 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  +Y A  +  D    +  +A+A      +  KILQ L K  I+++ +G 
Sbjct: 2   FSKACEYGIRAAIYIAQQSLVDRKVSLKDVAKAIESPTAYTSKILQKLSKNSIIKSDKGP 61

Query: 61  RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  + +   +++ +  +V A +       C    K  C     C + +  +       
Sbjct: 62  TGGFSMDKTELEKVKLCSIVYAIDGDAVYTGCGLGLK-KCNENKPCPVHNQFKLIREELK 120

Query: 120 DVLTQYSIECLVRN 133
            +L   +++ L  +
Sbjct: 121 KMLETTTVKTLATD 134


>gi|259503283|ref|ZP_05746185.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
 gi|259168738|gb|EEW53233.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
          Length = 154

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I H   P     IA +   S + + +++  L K G++ETV G
Sbjct: 1   MRVSTRLSDSIHILAFLQIFHGKLPLTSENIAGSVRTSPVVIRRLMSALRKGGLIETVPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
                RL RPA +I++ D+  A E S   +         +C + G+    L     +A  
Sbjct: 61  -SADPRLARPASEISLYDIYLAVEGSDRHLFTIDEKTAPECIVGGNIQATLAEYYHQAEV 119

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   +++ ++ +
Sbjct: 120 AAQAKLATVTLQDVLDS 136


>gi|257886094|ref|ZP_05665747.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821950|gb|EEV49080.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 155

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I VL+Y  +  D  +  S+ IA +   +   + KI+  L K+G++ T  
Sbjct: 1   MKYSLQFSD-AIHVLVYIEMFQDTQSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G+     L +  DQI++LDV ++ E +  + +       +C +  +    L     +   
Sbjct: 60  GKP-QPSLAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + + + +++ L+   + ++K
Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141


>gi|308068918|ref|YP_003870523.1| hypothetical protein PPE_02149 [Paenibacillus polymyxa E681]
 gi|305858197|gb|ADM69985.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 158

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M      +  +  L+   +  D        I++    S  +  K+L+ LV + ++ +V G
Sbjct: 1   MK--TGVEQSVYALLLLTMLPDKAVLPGEAISQQLGASPTYFHKLLRKLVSSDLITSVPG 58

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALN 116
            +GG +L +  + I + D+  A E    +      +     L      C L +++ +A  
Sbjct: 59  VKGGFKLKKKPEDIRVFDIYLAIEGQQTLYSSSGIYNEMLELKKDDQCCLLANLMEEAEA 118

Query: 117 AFFDVLTQYSIECLVRN 133
           ++  VL + +I  L  +
Sbjct: 119 SWKAVLKRETIASLSAD 135


>gi|148994892|ref|ZP_01823913.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168488651|ref|ZP_02712850.1| Rrf2 family protein [Streptococcus pneumoniae SP195]
 gi|147926960|gb|EDK78005.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183572805|gb|EDT93333.1| Rrf2 family protein [Streptococcus pneumoniae SP195]
 gi|332072468|gb|EGI82951.1| RRF2 family protein [Streptococcus pneumoniae GA17570]
          Length = 145

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +  R      +L+  A+   +       +A +  ++ + +  IL  L KA ++   RG
Sbjct: 1   MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRNILSQLKKAELISVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             GG  + +    I++LDV +A E   ++  +     +   +CP+     +  VL + L 
Sbjct: 61  -TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117

Query: 117 A----FFDVLTQYSIECLVRNRSSIKK 139
                    L Q S+E +V +  S  K
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAESQMK 144


>gi|325125866|gb|ADY85196.1| Transcription regulator (Putative) [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 153

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+        + IA     S + + +++  L  AG ++T  G
Sbjct: 1   MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASYLNTSPVVVRRLMSNLRDAGFIKTTHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L R    I++L++  ATE    +         DC + G+    LT     A  A
Sbjct: 61  SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119

Query: 118 FFDVLTQYSIECLVR 132
              VL + S++ ++ 
Sbjct: 120 AEAVLGKISLQDVID 134


>gi|58039649|ref|YP_191613.1| hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
 gi|58002063|gb|AAW60957.1| Hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
          Length = 148

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 10  GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            I +++  A H         + IA    +    +  +LQ L +AG++ +VRG +GG RL 
Sbjct: 11  AISIMLDVAFHAGRSGVVSGADIARRGDMLRRGIEPVLQALSRAGLLSSVRGPKGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   IT+ ++V+   E   +            L+ +  L    +   +   + +   ++
Sbjct: 71  RPPRTITLNEIVRTVTEDPEM------PGDGVNLLRTKVLEPFWQSVDHEVSEKMASVTL 124

Query: 128 ECLVRNRSS 136
           E L++N   
Sbjct: 125 EHLLQNAEE 133


>gi|172062519|ref|YP_001810170.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995036|gb|ACB65954.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
          Length = 146

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L  +G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++  +    +C +  +    L++ L++A     
Sbjct: 61  GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFGEVTLGMLSRD 134


>gi|299821160|ref|ZP_07053048.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816825|gb|EFI84061.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 146

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +   GI +L Y  I  D       IA +   +   + +++  LVKAG++E+  G 
Sbjct: 1   MKYSHKLSDGIHILAYMCICKDSDLSSKAIAASIESNPSLVRRMMAQLVKAGLIESRPGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PA++I++L++ +A E+   +     +    C + G+    L  +  +     
Sbjct: 61  VA-PVLTKPAEEISLLEIYQAIEQDHRILHVDKNTNPRCIVGGNIQHTLNGIYDQLQANV 119

Query: 119 FDVLTQYSIECLVRN 133
              + + +++ +V +
Sbjct: 120 EQEMREVTLQTVVDD 134


>gi|312891725|ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
 gi|311295808|gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
           paludis DSM 18603]
          Length = 136

 Score = 86.5 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
             R    + +L   A           +A +  I+ + + K L  L K  +V +  G+ GG
Sbjct: 3   NSRFSISVHILTLLASAEGGIVTSDYLAGSININPVLVRKELINLRKHNLVGSKEGKNGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
             L +PA +I + DV +A ++S  + +   +    CP+       L S+   A  A    
Sbjct: 63  AYLLKPATEIRLSDVYEAVKQSPLLGQAKNTPNPACPVGRQINQHLDSLHADAERALVKQ 122

Query: 122 LTQYSIECLVR 132
           L   +++  V 
Sbjct: 123 LNTTTLQQFVN 133


>gi|313123820|ref|YP_004034079.1| transcriptional regulator, badm/rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280383|gb|ADQ61102.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 153

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+        + IA +   S + + +++  L  AG ++T  G
Sbjct: 1   MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----AL 115
                 L R    I++L++  ATE    +         DC +   C +   L      A 
Sbjct: 61  SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVG--CNILPTLSDYFSHAE 117

Query: 116 NAFFDVLTQYSIECLVR 132
            A   VL + S++ ++ 
Sbjct: 118 TAAEAVLGKISLQDVID 134


>gi|146317974|ref|YP_001197686.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320161|ref|YP_001199872.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145688780|gb|ABP89286.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145690967|gb|ABP91472.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|292557757|gb|ADE30758.1| Predicted transcriptional regulator [Streptococcus suis GZ1]
          Length = 152

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +  +    + +L   +  +        +AE+   +  ++ K++  L  AG++ + +GR 
Sbjct: 9   QMDTKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRS 67

Query: 62  GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
           G  +L +    I++L++  AT+  E   + +   +  + CP+       +  +       
Sbjct: 68  G-YQLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQE 126

Query: 118 FFDVLTQYSIECLVRN 133
             + L++ S++ ++ N
Sbjct: 127 LENQLSRQSLDNVITN 142


>gi|300812882|ref|ZP_07093277.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496218|gb|EFK31345.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 152

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+        + IA +   S + + +++  L  AG ++T  G
Sbjct: 1   MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L R    I++L++  ATE    +         DC + G+    LT     A  A
Sbjct: 61  SP-DPELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119

Query: 118 FFDVLTQYSIECLVR 132
              VL + S++ ++ 
Sbjct: 120 AEAVLGKISLQDVID 134


>gi|229591081|ref|YP_002873200.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|229362947|emb|CAY49875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 145

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + + L  L + G V + +G +
Sbjct: 6   RLSRM----LHVLIHMGRH-EARATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L +P  +IT+LD+  A       A   ++   +C +  +    LT    +A +   
Sbjct: 61  GGWSLGKPLSEITLLDIHNALGTPSLFAIGLSTDHPECLVEQAVNAALTDAFDQAQSLLL 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
             L   ++  L  +     +I
Sbjct: 121 ARLGDVTLAQLADDFDQRYRI 141


>gi|15887587|ref|NP_353268.1| hypothetical protein Atu0237 [Agrobacterium tumefaciens str. C58]
 gi|15155126|gb|AAK86053.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 152

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++   H +       IA     + + + + +  L + G V + +G  GG  L +P 
Sbjct: 11  LHILIHMEKH-EGAATSENIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGGWVLAQPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            +IT+LD+ +A       +   A    +C +  +    L   + +A N         ++ 
Sbjct: 70  TEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAENILLSRFGSITLS 129

Query: 129 CLVRN 133
            L   
Sbjct: 130 TLAEE 134


>gi|327405156|ref|YP_004345994.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
           DSM 16823]
 gi|327320664|gb|AEA45156.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
           DSM 16823]
          Length = 144

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  ++ A  +  D    +  +AEA      +  KILQ L +  I+ + +G 
Sbjct: 2   FSKACEYGIRASIFIAEQSLLDRKVSLKDVAEAIDSPASYTSKILQKLSRNNIINSDKGP 61

Query: 61  RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            GG  +  +  +++ +  +V A +       C    K  C     C + +  +   +   
Sbjct: 62  TGGFSMGKKELEKVKLSSIVFAIDGESIYNGCGLGLK-KCNEKMPCPVHNQFKMIRDQLK 120

Query: 120 DVLTQYSIECLV 131
            +L   ++  L 
Sbjct: 121 KMLETTTVLSLA 132


>gi|325686154|gb|EGD28205.1| transcriptional regulator [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 152

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +  I+        + IA +   S + + +++  L  AG ++T  G
Sbjct: 1   MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
                 L R    I++L++  ATE    +         DC + G+    LT     A  A
Sbjct: 61  SP-DPELLREPKDISLLEIYLATEGKSPLFTIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119

Query: 118 FFDVLTQYSIECLVR 132
              VL + S++ ++ 
Sbjct: 120 AEAVLGKISLQDVID 134


>gi|87303358|ref|ZP_01086146.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87282006|gb|EAQ73968.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 146

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L +R    I+ L+  A+  +       +A +  I E  L ++L  L +A +VE  RGR G
Sbjct: 2   LKRRGLQAIQALLELALEPESWRSGPDLAASLAIPEPMLEQVLLQLRRAKLVEARRGRHG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G RL R A  I +L+V++A E          +         +  L    R+   A    L
Sbjct: 62  GYRLQRTAAAIPLLEVLQAVEADPSQPPAVTAPSEQAGEQVALALE---RRLQLALEREL 118

Query: 123 TQYSIECLVRNRSSIKKIF 141
            + ++E L+ +  S ++  
Sbjct: 119 ARLTLEELLYDLRSTQECL 137


>gi|170736329|ref|YP_001777589.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818517|gb|ACA93099.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
          Length = 137

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++     D P     IA   C + + + ++L  L   G V++ +G  GG  L    
Sbjct: 2   LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGGGWALSVAL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +      + ++ 
Sbjct: 61  DDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLARFGEVTLG 120

Query: 129 CLVRN 133
            L R+
Sbjct: 121 MLSRD 125


>gi|90424127|ref|YP_532497.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris BisB18]
 gi|90106141|gb|ABD88178.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris BisB18]
          Length = 153

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  I  + P     +A+A   + + + +I+  L  AG V + +G  GG  +    
Sbjct: 11  LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             IT+ D+ +A      +A    +    C +  +    L    R+   AF   L   ++ 
Sbjct: 70  AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129

Query: 129 CLVRN 133
            L ++
Sbjct: 130 VLAKD 134


>gi|217978393|ref|YP_002362540.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
 gi|217503769|gb|ACK51178.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
           silvestris BL2]
          Length = 148

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 16  YCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
             AIH+   P     +A    +    L  +LQ LV+A I++ +RG RGG  L R   +IT
Sbjct: 17  DIAIHSRPLPVAAKALAARLELPPRHLETLLQALVRANILKGLRGPRGGYELARERRKIT 76

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
              V++A      +++     +     + +  +  ++ KA  AF   L   +IE + R  
Sbjct: 77  AGAVLRAV-----LSDAAGPGEPADSKLVAKVIAPMVEKAGAAFLAELDNITIEDICRRA 131

Query: 135 SSIKKIFNAG 144
             +    +AG
Sbjct: 132 DELNLYRDAG 141


>gi|15599364|ref|NP_252858.1| hypothetical protein PA4169 [Pseudomonas aeruginosa PAO1]
 gi|218889502|ref|YP_002438366.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254237049|ref|ZP_04930372.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242853|ref|ZP_04936175.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9950377|gb|AAG07556.1|AE004833_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126168980|gb|EAZ54491.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196231|gb|EAZ60294.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218769725|emb|CAW25485.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 142

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H + P     I +    + + + + +  L   G V + +G R
Sbjct: 6   RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117
           GG RL +P   IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A    
Sbjct: 61  GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118

Query: 118 FFDVLTQYSIECLVRN 133
             + L   ++E L   
Sbjct: 119 LLERLGSVTLEQLASE 134


>gi|107103686|ref|ZP_01367604.1| hypothetical protein PaerPA_01004757 [Pseudomonas aeruginosa PACS2]
          Length = 133

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A H + P     I +    + + + + +  L   G V + +G RGG RL +P 
Sbjct: 2   LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----FFDVLTQYS 126
             IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A      + L   +
Sbjct: 61  ADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQALLLERLGSVT 118

Query: 127 IECLVRN 133
           +E L   
Sbjct: 119 LEQLASE 125


>gi|255326646|ref|ZP_05367722.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
 gi|255295863|gb|EET75204.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
          Length = 164

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + VL   +  ++       +A +   +  ++ KI+  L KA I+ + RG+ G  
Sbjct: 23  TKFSVALHVLTMIS-ESEKTLSSEDLARSVGTNASYIRKIITLLKKADILSSQRGKPG-Y 80

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L RP + I++LD+  A +E  S  +     +   +CP+       +  +  +       
Sbjct: 81  QLTRPVENISLLDIYLAVQESRSINLFHTHHNANEECPVGAHILQAVNPIFEETQRHLAQ 140

Query: 121 VLTQYSIECLVRN 133
            L Q S+  ++ N
Sbjct: 141 DLAQRSLRNVITN 153


>gi|284036641|ref|YP_003386571.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283815934|gb|ADB37772.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
           74]
          Length = 135

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 7   TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             + I   +L   A  N        +A +  I+ + + K L  L   G+V +  G+ GG 
Sbjct: 3   GRFAISMHILTLLAKANGEWLPSDLLAGSININPVLVRKELINLRNKGLVVSREGKYGGS 62

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
            L + A QI + DV  AT +  F+         +CP+       L  + ++A  A    L
Sbjct: 63  MLAKSAAQIRVSDVFLATRQGAFLGTSRNDPNPNCPVGKQINQHLDGLYQEAEEALLHKL 122

Query: 123 TQYSIECLVRN 133
              ++    R 
Sbjct: 123 GDTTLADFSRR 133


>gi|226952787|ref|ZP_03823251.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|226836490|gb|EEH68873.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
          Length = 139

 Score = 86.2 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A  N       +IA     + + + + +  L  AG +++V+G +GG  L    
Sbjct: 2   LHVLLHMARQN-KIFTSEEIAHMLSTNAVVVRRTMAGLKNAGFIQSVKGPKGGWHLIADL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           ++ T+LD+  A  E    A        +C    V +  L   +++A +     L   ++ 
Sbjct: 61  EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNEALEDAMQQAQDILLAKLKATTLA 120

Query: 129 CLVRNRSSIKK 139
            L      + +
Sbjct: 121 DLAYAFDQLYQ 131


>gi|312865004|ref|ZP_07725232.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415]
 gi|311099115|gb|EFQ57331.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415]
          Length = 142

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + +    + +L Y A++ +         IA++   +   + +++  L KAG++ T  
Sbjct: 1   MKQSHKLSDALHILSYIALNQERLPKISSQTIADSVGTNPGLVRRLMSNLSKAGLLITKV 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G     +L +    I+  DV +A E    + +   S   DCP+  +    L S  ++   
Sbjct: 61  GAA-KPQLAKAPKDISFYDVFEAVETDG-LLKVDESTNPDCPIGSNVPKVLPSFYQRVAK 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A +D +   S++ ++  
Sbjct: 119 AAYDEMRAISLQDMMDE 135


>gi|329768830|ref|ZP_08260259.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
 gi|328838223|gb|EGF87836.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
          Length = 167

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLTK T+  I +++   + + +      +I++   IS  +L KI++ LV   +V+   G
Sbjct: 1   MHLTKSTEQAICIMVMLYLQDRHIYLNSKEISKRLNISPTYLKKIMRKLVVHNLVKANTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVA--------ECFASHKIDCPLVGSCGLTSVL 111
             GG +  R    +T+ DV  A      V         + F              L  V 
Sbjct: 61  VGGGYK-YRSNKTVTLYDVYVALNGEVEVFVLKTDYVSKIFEGALAVDKRYSE-YLRKV- 117

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
               ++  + L Q +IE +V +
Sbjct: 118 NTINHSIKEALEQITIEEIVED 139


>gi|115525039|ref|YP_781950.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris BisA53]
 gi|115518986|gb|ABJ06970.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris BisA53]
          Length = 153

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  I  + P     +A+A   + + + +I+  L  AG V + +G  GG  +    
Sbjct: 11  LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             IT+ D+ +A      +A    +    C +  +    L    R+   AF   L   ++ 
Sbjct: 70  AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129

Query: 129 CLVRN 133
            L ++
Sbjct: 130 VLAKD 134


>gi|254249066|ref|ZP_04942386.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
 gi|124875567|gb|EAY65557.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
          Length = 146

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L   G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A  +  
Sbjct: 61  GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFGEVTLGMLSRD 134


>gi|256787721|ref|ZP_05526152.1| hypothetical protein SlivT_24808 [Streptomyces lividans TK24]
 gi|289771609|ref|ZP_06530987.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289701808|gb|EFD69237.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 144

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L ++G+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122
            R    +T+LDV +A E     A    +    C +    G+  V+R       +     L
Sbjct: 70  ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPVMRDVYEGIEETVRHEL 127

Query: 123 TQYSIECLVRN 133
            + ++E ++RN
Sbjct: 128 ARVTLEDVLRN 138


>gi|149180765|ref|ZP_01859268.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148851555|gb|EDL65702.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 206

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I+ L+  A H +       +AE      +FL KIL+ LVK  +++   GR GG  L + 
Sbjct: 83  AIQALLVLANH-EGLCPSGVLAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGYYLVKN 141

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF----DVLTQY 125
            + I + DV  A     F    F     +C    +C     L +  +       + L Q 
Sbjct: 142 PEDIKLSDVYNAMRSETFSKGFFDVESKEC--FAAC-TRDSLFELRDEMESWIVNGLEQK 198

Query: 126 SIECLVRN 133
           +I+ L++ 
Sbjct: 199 TIKDLMKQ 206


>gi|42518338|ref|NP_964268.1| hypothetical protein LJ0251 [Lactobacillus johnsonii NCC 533]
 gi|41582622|gb|AAS08234.1| hypothetical protein LJ_0251 [Lactobacillus johnsonii NCC 533]
          Length = 149

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  TK +   I +L   A+   +P     IA++   +  ++ KI+  L    I+E+ RG+
Sbjct: 1   MKDTKFS-IAIHILSMIALSP-HPINSVDIAKSVGTNPSYIRKIMSLLKDHKIIESHRGK 58

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
            G ++L      + +L + K   EE+  + +   +   +CP+  +    +   L  A   
Sbjct: 59  TG-IQLLVDPGDLDLLTIYKIVEEENPHIFQVHQNANAECPVGRNIVNAVFPFLDDAEKR 117

Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
               L   ++  ++     +++
Sbjct: 118 LQHSLQHDTLADVIDRLKQLER 139


>gi|52142135|ref|YP_084695.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51975604|gb|AAU17154.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           cereus E33L]
          Length = 137

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            +++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LEEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|308175394|ref|YP_003922099.1| hypothetical protein BAMF_3503 [Bacillus amyloliquefaciens DSM 7]
 gi|307608258|emb|CBI44629.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
 gi|328555369|gb|AEB25861.1| hypothetical protein BAMTA208_18555 [Bacillus amyloliquefaciens
           TA208]
 gi|328913739|gb|AEB65335.1| hypothetical protein LL3_03809 [Bacillus amyloliquefaciens LL3]
          Length = 134

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   +   D       IA +   + + + + +  L KAGI+ +  G  G
Sbjct: 2   INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +   +IT+L+V +A +    +     +   DCP+  +  +   L +       A 
Sbjct: 60  -ASLKKDPSEITLLEVYRAVQNKEELFAVHDNPNPDCPVGKN--IQRALDETFGSVQRAM 116

Query: 119 FDVLTQYSIECLVRN 133
            + L   S+  ++ +
Sbjct: 117 ENELASKSLYDVMNH 131


>gi|323525697|ref|YP_004227850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
           CCGE1001]
 gi|323382699|gb|ADX54790.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           CCGE1001]
          Length = 151

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGTPLSSDMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  +QI++LDV +A +++   A         C +  +    L  ++ +A  A 
Sbjct: 61  GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L + ++  
Sbjct: 121 EASLARRTLAD 131


>gi|118475649|ref|YP_892090.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
          subsp. fetus 82-40]
 gi|118414875|gb|ABK83295.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
          subsp. fetus 82-40]
          Length = 125

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
             P  +  I++   +S+ +L ++L  L  AG V +++G +GG  L +  D+IT  D+  
Sbjct: 11 QKNPVSLKDISQNIGVSKNYLEQVLNTLRNAGFVSSIKGLKGGYFLNKTLDEITFYDIFY 70

Query: 81 ATEESFFVAECFASHK 96
          A E  F +      H 
Sbjct: 71 ALENDFGLTSLNVEHS 86


>gi|42782474|ref|NP_979721.1| rrf2 family protein [Bacillus cereus ATCC 10987]
 gi|42738400|gb|AAS42329.1| rrf2 family protein [Bacillus cereus ATCC 10987]
          Length = 137

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------D 120
             ++ +  + + T E +    +C  S+         C + S +RK L A F        +
Sbjct: 68  LSEVNLWHIYQITSEGALQP-KCPESNN-------QCIVGSNMRKVLFAIFLGAEEHLGE 119

Query: 121 VLTQYSIECLVR 132
            L  Y+++ +V 
Sbjct: 120 YLKNYTMKEVVD 131


>gi|253751196|ref|YP_003024337.1| transcription regulation protein [Streptococcus suis SC84]
 gi|253753097|ref|YP_003026237.1| transcription regulation protein [Streptococcus suis P1/7]
 gi|253754919|ref|YP_003028059.1| transcription regulation protein [Streptococcus suis BM407]
 gi|251815485|emb|CAZ51063.1| putative transcription regulation protein [Streptococcus suis SC84]
 gi|251817383|emb|CAZ55119.1| putative transcription regulation protein [Streptococcus suis
           BM407]
 gi|251819342|emb|CAR44712.1| putative transcription regulation protein [Streptococcus suis P1/7]
 gi|319757466|gb|ADV69408.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 143

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +  +        +AE+   +  ++ K++  L  AG++ + +GR G  
Sbjct: 3   TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRSG-Y 60

Query: 65  RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +    I++L++  AT+  E   + +   +  + CP+       +  +         +
Sbjct: 61  QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQELEN 120

Query: 121 VLTQYSIECLVRN 133
            L++ S++ ++ N
Sbjct: 121 QLSRQSLDNVITN 133


>gi|229829819|ref|ZP_04455888.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM
           14600]
 gi|229791808|gb|EEP27922.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM
           14600]
          Length = 146

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T +    + ++       D      + +A +   + + +  ++  L ++GI+E  +G
Sbjct: 1   MQITSKFTIAVHIITAIDYFKDSEKVTSNFLAGSVGANPVIVRNVMGNLKESGIIEISQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKAL 115
           + G + L +  D+IT  DV KA +  +   +     +  I CP+  +  L     L++  
Sbjct: 61  KSG-ISLAKGLDEITFYDVYKAVDCVDGEGLFRFHENPNIKCPVGRNIHLAMDEKLQRVQ 119

Query: 116 NAFFDVLTQYSIECLVRN 133
           +   + L   +I  +  +
Sbjct: 120 DTMENELRHITIADVAAD 137


>gi|30263359|ref|NP_845736.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47528737|ref|YP_020086.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186205|ref|YP_029457.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|65320688|ref|ZP_00393647.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
 gi|165868327|ref|ZP_02212987.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167632500|ref|ZP_02390827.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|167637112|ref|ZP_02395392.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|170685042|ref|ZP_02876267.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|170704922|ref|ZP_02895387.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|177649964|ref|ZP_02932965.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190564684|ref|ZP_03017605.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035535|ref|ZP_03102939.1| rrf2 family protein [Bacillus cereus W]
 gi|196038146|ref|ZP_03105456.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206975367|ref|ZP_03236280.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|218904535|ref|YP_002452369.1| rrf2 family protein [Bacillus cereus AH820]
 gi|222096863|ref|YP_002530920.1| rrf2 family protein [Bacillus cereus Q1]
 gi|227813772|ref|YP_002813781.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229604113|ref|YP_002867615.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|254685971|ref|ZP_05149830.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723374|ref|ZP_05185162.1| rrf2 family protein [Bacillus anthracis str. A1055]
 gi|254738442|ref|ZP_05196145.1| rrf2 family protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254742392|ref|ZP_05200077.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
 gi|254752758|ref|ZP_05204794.1| rrf2 family protein [Bacillus anthracis str. Vollum]
 gi|254761271|ref|ZP_05213295.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
 gi|301054901|ref|YP_003793112.1| putative Rrf2 family transcriptional regulator [Bacillus anthracis
           CI]
 gi|30257993|gb|AAP27222.1| rrf2 family protein [Bacillus anthracis str. Ames]
 gi|47503885|gb|AAT32561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180132|gb|AAT55508.1| rrf2 family protein [Bacillus anthracis str. Sterne]
 gi|164715053|gb|EDR20570.1| rrf2 family protein [Bacillus anthracis str. A0488]
 gi|167514619|gb|EDR89985.1| rrf2 family protein [Bacillus anthracis str. A0193]
 gi|167532798|gb|EDR95434.1| rrf2 family protein [Bacillus anthracis str. A0442]
 gi|170129777|gb|EDS98639.1| rrf2 family protein [Bacillus anthracis str. A0389]
 gi|170671302|gb|EDT22040.1| rrf2 family protein [Bacillus anthracis str. A0465]
 gi|172083916|gb|EDT68975.1| rrf2 family protein [Bacillus anthracis str. A0174]
 gi|190564001|gb|EDV17965.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991836|gb|EDX55800.1| rrf2 family protein [Bacillus cereus W]
 gi|196031416|gb|EDX70013.1| rrf2 family protein [Bacillus cereus NVH0597-99]
 gi|206746269|gb|EDZ57663.1| rrf2 family protein [Bacillus cereus H3081.97]
 gi|218539133|gb|ACK91531.1| rrf2 family protein [Bacillus cereus AH820]
 gi|221240921|gb|ACM13631.1| rrf2 family protein [Bacillus cereus Q1]
 gi|227005217|gb|ACP14960.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
 gi|229268521|gb|ACQ50158.1| rrf2 family protein [Bacillus anthracis str. A0248]
 gi|300377070|gb|ADK05974.1| putative transcriptional regulator, Rrf2 family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 137

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            D++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|227507946|ref|ZP_03937995.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227192562|gb|EEI72629.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 159

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L    +  + +L+  A+  D+ P R   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1  MKLKSSFEQAVCILLMLALSKDHMPLRSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
          + GG  L    +++T+LDV  A E    + 
Sbjct: 61 KGGGFSLSYDINRMTLLDVYNAIEGPSPII 90


>gi|69245516|ref|ZP_00603480.1| Protein of unknown function UPF0074 [Enterococcus faecium DO]
 gi|257879779|ref|ZP_05659432.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257882506|ref|ZP_05662159.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257891620|ref|ZP_05671273.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894098|ref|ZP_05673751.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614203|ref|ZP_05711973.1| transcription regulator [Enterococcus faecium DO]
 gi|260559454|ref|ZP_05831635.1| transcription regulator [Enterococcus faecium C68]
 gi|261206604|ref|ZP_05921302.1| transcription regulator [Enterococcus faecium TC 6]
 gi|289564966|ref|ZP_06445420.1| transcription regulator [Enterococcus faecium D344SRF]
 gi|293553612|ref|ZP_06674236.1| transcription regulator [Enterococcus faecium E1039]
 gi|293564096|ref|ZP_06678502.1| transcription regulator [Enterococcus faecium E1162]
 gi|293570033|ref|ZP_06681113.1| transcription regulator [Enterococcus faecium E1071]
 gi|294617015|ref|ZP_06696735.1| transcription regulator [Enterococcus faecium E1636]
 gi|294618251|ref|ZP_06697833.1| transcription regulator [Enterococcus faecium E1679]
 gi|294620949|ref|ZP_06700149.1| transcriptional regulator [Enterococcus faecium U0317]
 gi|314940090|ref|ZP_07847273.1| Rrf2 family protein [Enterococcus faecium TX0133a04]
 gi|314942501|ref|ZP_07849340.1| Rrf2 family protein [Enterococcus faecium TX0133C]
 gi|314949391|ref|ZP_07852732.1| Rrf2 family protein [Enterococcus faecium TX0082]
 gi|314952852|ref|ZP_07855824.1| Rrf2 family protein [Enterococcus faecium TX0133A]
 gi|314993716|ref|ZP_07859061.1| Rrf2 family protein [Enterococcus faecium TX0133B]
 gi|314994780|ref|ZP_07859912.1| Rrf2 family protein [Enterococcus faecium TX0133a01]
 gi|68195767|gb|EAN10204.1| Protein of unknown function UPF0074 [Enterococcus faecium DO]
 gi|257814007|gb|EEV42765.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818164|gb|EEV45492.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827980|gb|EEV54606.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830477|gb|EEV57084.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074553|gb|EEW62874.1| transcription regulator [Enterococcus faecium C68]
 gi|260079097|gb|EEW66790.1| transcription regulator [Enterococcus faecium TC 6]
 gi|289163173|gb|EFD11019.1| transcription regulator [Enterococcus faecium D344SRF]
 gi|291587405|gb|EFF19289.1| transcription regulator [Enterococcus faecium E1071]
 gi|291590169|gb|EFF21958.1| transcription regulator [Enterococcus faecium E1636]
 gi|291595467|gb|EFF26778.1| transcription regulator [Enterococcus faecium E1679]
 gi|291599479|gb|EFF30496.1| transcriptional regulator [Enterococcus faecium U0317]
 gi|291602187|gb|EFF32415.1| transcription regulator [Enterococcus faecium E1039]
 gi|291604014|gb|EFF33542.1| transcription regulator [Enterococcus faecium E1162]
 gi|313590964|gb|EFR69809.1| Rrf2 family protein [Enterococcus faecium TX0133a01]
 gi|313591816|gb|EFR70661.1| Rrf2 family protein [Enterococcus faecium TX0133B]
 gi|313595086|gb|EFR73931.1| Rrf2 family protein [Enterococcus faecium TX0133A]
 gi|313598722|gb|EFR77567.1| Rrf2 family protein [Enterococcus faecium TX0133C]
 gi|313640690|gb|EFS05270.1| Rrf2 family protein [Enterococcus faecium TX0133a04]
 gi|313644222|gb|EFS08802.1| Rrf2 family protein [Enterococcus faecium TX0082]
          Length = 155

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I VL Y  +  D  +  S+ IA +   +   + KI+  L K+G++ T  
Sbjct: 1   MKYSLQFSD-AIHVLAYIEMFQDTRSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G+     L +  DQI++LDV ++ E +  + +       +C +  +    L     +   
Sbjct: 60  GKP-QPSLAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + + + +++ L+   + ++K
Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141


>gi|294499976|ref|YP_003563676.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294349913|gb|ADE70242.1| transcriptional regulator, putative [Bacillus megaterium QM B1551]
          Length = 159

 Score = 85.8 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MH+    +   Y I +L +             I+     S  +  K+L+ LV A ++ +V
Sbjct: 1   MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115
            G +GG RL +  ++I I DV  A E    +          ++      C L+ ++ +A 
Sbjct: 59  PGSKGGFRLKKTPEEIRIYDVYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +++  +L + +I  L   
Sbjct: 119 SSWQSILKRQTIATLTNE 136


>gi|295705354|ref|YP_003598429.1| transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294803013|gb|ADF40079.1| transcriptional regulator, putative [Bacillus megaterium DSM 319]
          Length = 159

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 1   MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           MH+    +   Y I +L +             I+     S  +  K+L+ LV A ++ +V
Sbjct: 1   MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115
            G +GG RL +  ++I I D+  A E    +          ++      C L+ ++ +A 
Sbjct: 59  PGSKGGFRLKKTPEEIRIYDIYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118

Query: 116 NAFFDVLTQYSIECLVRN 133
           +++  +L + +I  L   
Sbjct: 119 SSWQSILKRQTIATLTNE 136


>gi|206603887|gb|EDZ40367.1| Putative transcriptional regulator, BadM/Rrf2 family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 159

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
                   + +AE+     + + +IL  L KAG+V + +G+ GGV L +  + I++L++ 
Sbjct: 42  KKGEWVNSAHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIF 101

Query: 80  KAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131
           +A  EES F           CP+  +    +  V R    A    L +  +  L+
Sbjct: 102 RAVGEESVFAFN-PNPPNPKCPVSVNMFRLIEPVFRAVGVALEKELDRIRLSDLI 155


>gi|319936607|ref|ZP_08011020.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808164|gb|EFW04729.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 141

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M + +  +  I +L+     ++ P +  ++++   +S+ +L K+ + LV AG++ +   +
Sbjct: 1   MKIRQSFEQAICILLLIGA-SESPIKSHELSDKLDVSDSYLKKVTRQLVVAGLITSKASK 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-------SVLRK 113
            GG  L +  + I+  D+ +A E      E   +H ++     S  +          L K
Sbjct: 60  LGGFVLKKRLEDISFFDIFEAIEGKEKFVE--TTHLVEKVFDPSLKVKETEAVIVDHLNK 117

Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
           A   +   L + +++ ++    SI
Sbjct: 118 AEEQYKAKLREITLDHILSAAHSI 141


>gi|329938564|ref|ZP_08287989.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329302537|gb|EGG46428.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 147

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
            R    IT+LDV +A E     A    +    C +       +  + +         L +
Sbjct: 70  ARELGSITLLDVYEAVEPGPLFAMHRTTPDPGCVVGHGIQPAMRGIYQDIEETLRHELAR 129

Query: 125 YSIECLVRN 133
            ++E ++ +
Sbjct: 130 VTLEKVLGD 138


>gi|154687779|ref|YP_001422940.1| YwnA [Bacillus amyloliquefaciens FZB42]
 gi|154353630|gb|ABS75709.1| YwnA [Bacillus amyloliquefaciens FZB42]
          Length = 134

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   +   D       IA +   + + + + +  L KAGI+ +  G  G
Sbjct: 2   INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +   +IT+L+V +A +    +     +   DCP+  +  +   L +       A 
Sbjct: 60  -ASLKKDPSEITLLEVYRAVQNREELFAVHDNPNPDCPVGKN--IQRALDETFGSVQRAM 116

Query: 119 FDVLTQYSIECLVRN 133
            + L   S+  ++ +
Sbjct: 117 ENELASKSLYDVMNH 131


>gi|117164516|emb|CAJ88062.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
           23877]
          Length = 150

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  ++    +      QIA +   + + + ++L  L KAG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRRGHEVATSEQIATSANTNPVVIRRLLGELRKAGLVESRRGVGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF----FDVL 122
            R  + +T+LDV +A E     A    +   +C +    G+   ++           D L
Sbjct: 70  ARELESMTLLDVYEAVEPGPLFAMHRTTPDQECVVGH--GIQPAMQNIYEGIEKTLRDEL 127

Query: 123 TQYSIECLVRN 133
            + ++  ++R+
Sbjct: 128 ARVTLANVLRD 138


>gi|239627045|ref|ZP_04670076.1| RRF2 family protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517191|gb|EEQ57057.1| RRF2 family protein [Clostridiales bacterium 1_7_47FAA]
          Length = 147

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    +++LM   +  D       I+E+   + + + ++   L KAGI+    GR
Sbjct: 1   MRMSTQFTVTVQMLMMILVFKDKKMTSEMISESTGGNPIMVRQLFGKLKKAGILHVSTGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS--------VLR 112
            G   L R  + I++ D+  A E  +   E F  H     +   C +           L 
Sbjct: 61  -GATVLARNPEDISLWDIYMAVEG-YDTNELFKFHP---RISEGCQIGRFFKEILGVHLD 115

Query: 113 KALNAFFDVLTQYSIECL 130
           +A+ A  + +   S+  L
Sbjct: 116 EAVQAMAEKMDAVSLAQL 133


>gi|296331295|ref|ZP_06873767.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676281|ref|YP_003867953.1| hypothetical protein BSUW23_18045 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151410|gb|EFG92287.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414525|gb|ADM39644.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 133

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   ++  D       IA +   + + + +++  L KA I+ +  G  G
Sbjct: 2   INSRLSVAIHILSLISM--DEKESSETIAGSVNTNPVVVRRMISMLKKADILTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +    I++L+V +A ++   +     +   +CP+     + + L +       A 
Sbjct: 60  -ASLKKDPADISLLEVYRAVQKQDELFAIHENPNPNCPVGK--RIQNALDETFESVQKAM 116

Query: 119 FDVLTQYSIECLVRN 133
            D L   S++ ++ +
Sbjct: 117 EDELASKSLKDVMNH 131


>gi|225572359|ref|ZP_03781223.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040241|gb|EEG50487.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM
           10507]
          Length = 157

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L  +    +  L++ A + D        +A +   + + +  IL  L +   V   RG
Sbjct: 1   MRLNTKYSIALHCLVFLAEYGDQMKVTSEVLARSTGCNPVIIRNILGALQRENFVTIARG 60

Query: 60  RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             GG  L     ++T+  V +A   E               CP+       L+   ++  
Sbjct: 61  V-GGAHLNTDPKKLTVWQVYQAVEPEGLEHFMNLHPHPSGKCPVGRRIAEVLSHPYQQIE 119

Query: 116 NAFFDVLTQYSIECLVR 132
            A    +   +++ L+ 
Sbjct: 120 EAIQQTMENITLQQLLD 136


>gi|237746415|ref|ZP_04576895.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377766|gb|EEO27857.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 144

 Score = 85.4 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 12/146 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVE--TV 57
           M +  +  Y ++++   A+ +D  P  ++ I+    IS   L  I + LV A ++E  + 
Sbjct: 1   MRIATKERYALKMMADLAVASDSEPVSLTAISTRQNISVGSLRVIAEALVLASLIEADSH 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           R       L +  D+I + D+ ++T+  F    C  +   +C     C       + L  
Sbjct: 61  RPYH--YHLAQQPDRIRLQDIFRSTDGRFACLACNDARPDECRRYRVCS-RVHFWEGLQE 117

Query: 118 F-----FDVLTQYSIEC-LVRNRSSI 137
                    ++  ++   L + ++ +
Sbjct: 118 IDLPLHDANMSLKTLADYLTKRKTPL 143


>gi|223933381|ref|ZP_03625368.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|302023354|ref|ZP_07248565.1| transcription regulation protein [Streptococcus suis 05HAS68]
 gi|330832158|ref|YP_004400983.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3]
 gi|223897948|gb|EEF64322.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           89/1591]
 gi|329306381|gb|AEB80797.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
           ST3]
          Length = 143

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +  +        +AE+   +  ++ K++  L  AG++ + +GR G  
Sbjct: 3   TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGRSG-Y 60

Query: 65  RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +    I++L++  AT+  E   + +   +  + CP+       +  +         +
Sbjct: 61  QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQHIEGAMVPIFSSVEQDLEN 120

Query: 121 VLTQYSIECLVRN 133
            L++ S++ ++ N
Sbjct: 121 QLSRQSLDNVIDN 133


>gi|75760212|ref|ZP_00740268.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492298|gb|EAO55458.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 149

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 19/133 (14%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 20  AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 79

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF-------- 119
             ++ +  + + T E +             CP     C + S +RK L A F        
Sbjct: 80  LGEVNLWHIYQITSEGALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLG 130

Query: 120 DVLTQYSIECLVR 132
           + L  Y+++ +V 
Sbjct: 131 EYLKNYTMKEVVD 143


>gi|218898464|ref|YP_002446875.1| rrf2 family protein [Bacillus cereus G9842]
 gi|218543993|gb|ACK96387.1| rrf2 family protein [Bacillus cereus G9842]
          Length = 137

 Score = 85.4 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 19/133 (14%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF-------- 119
             ++ +  + + T E +             CP     C + S +RK L A F        
Sbjct: 68  LGEVNLWHIYQITSEGALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLG 118

Query: 120 DVLTQYSIECLVR 132
           + L  Y+++ +V 
Sbjct: 119 EYLKNYTMKEVVD 131


>gi|238855802|ref|ZP_04646094.1| rrf2 family protein [Lactobacillus jensenii 269-3]
 gi|260665236|ref|ZP_05866085.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|282933517|ref|ZP_06338889.1| transcriptional regulator [Lactobacillus jensenii 208-1]
 gi|313472788|ref|ZP_07813276.1| Rrf2 family protein [Lactobacillus jensenii 1153]
 gi|238831578|gb|EEQ23923.1| rrf2 family protein [Lactobacillus jensenii 269-3]
 gi|239529039|gb|EEQ68040.1| Rrf2 family protein [Lactobacillus jensenii 1153]
 gi|260560973|gb|EEX26948.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|281302363|gb|EFA94593.1| transcriptional regulator [Lactobacillus jensenii 208-1]
          Length = 150

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +           +A +   +  ++ KIL  L  +GI+ + +G+ G  
Sbjct: 3   TKFAVALHILTMIS-EETSKLSSQTLANSVGTNASYIRKILALLKNSGIITSHQGKTG-Y 60

Query: 65  RLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFD 120
           +L R  +QI++L +  A +ES    +     +    CP+       +  +         +
Sbjct: 61  QLTRLPEQISLLTIYLAIQESDHIHLFAVHQNANPKCPVGKYIESAMRPLFADIEVQLAE 120

Query: 121 VLTQYSIECLVRN 133
            L + +++ ++ N
Sbjct: 121 ALRRQTLKDVIDN 133


>gi|167755523|ref|ZP_02427650.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
 gi|167704462|gb|EDS19041.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
          Length = 167

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L   TDY IR+++Y AI  D   +  +++E   I +  +FKI + L    I+    G +
Sbjct: 38  QLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGIQ 96

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFF 119
           GG +L +    I+I  ++   E +  +  C    K  C      +C +  V       F 
Sbjct: 97  GGFKLKKHPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHFE 155

Query: 120 DVLTQYSIECLV 131
           + L +  I  L+
Sbjct: 156 EYLKKIKILDLI 167


>gi|227510984|ref|ZP_03941033.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
 gi|227085726|gb|EEI21038.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
          buchneri ATCC 11577]
          Length = 159

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L    +  + +L+  A+  D+ P +   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1  MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
          + GG  L    +++T+LDV  A E    + 
Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90


>gi|196042814|ref|ZP_03110053.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225865368|ref|YP_002750746.1| rrf2 family protein [Bacillus cereus 03BB102]
 gi|196026298|gb|EDX64966.1| rrf2 family protein [Bacillus cereus 03BB108]
 gi|225790074|gb|ACO30291.1| rrf2 family protein [Bacillus cereus 03BB102]
          Length = 137

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
             ++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|49076390|gb|AAT49554.1| PA4169 [synthetic construct]
          Length = 143

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL + A H + P     I +    + + + + +  L   G V + +G R
Sbjct: 6   RLSRM----LHVLTHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117
           GG RL +P   IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A    
Sbjct: 61  GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118

Query: 118 FFDVLTQYSIECLVRN 133
             + L   ++E L   
Sbjct: 119 LLERLGSVTLEQLASE 134


>gi|182679823|ref|YP_001833969.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635706|gb|ACB96480.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 149

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++R    +  +   A+H    P     +A    +    L  +LQ LV+A I++ VRG R
Sbjct: 4   LSRRNLLALAAVTDIALHARPLPVAAKALASRLQLPPRHLETLLQALVRANILKGVRGPR 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-----TSVLRKALN 116
           GG  L R   +IT  D+++A                +  L+  CGL       ++ +A  
Sbjct: 64  GGYELARERRRITAADILRAI---------LNEQDSENGLIQPCGLVEHVVGPLVEEAGK 114

Query: 117 AFFDVLTQYSIECLVR 132
           AF   L + +I+   R
Sbjct: 115 AFVSELERLTIDDFCR 130


>gi|311070181|ref|YP_003975104.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942]
 gi|310870698|gb|ADP34173.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942]
          Length = 134

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   ++  D       IA++   + + + +++  L KA I+ +  G  G
Sbjct: 2   INSRLAVAIHILSIISV--DEKASSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFD 120
              L +    I++L+V +A ++   +     +    CP+     C L         A  D
Sbjct: 60  -ASLKKDPADISLLEVYRAVQKQEELFAVHDNPNPKCPVGKRIQCALDETFESVQKAMED 118

Query: 121 VLTQYSIECLVRN 133
            L   S+  ++ +
Sbjct: 119 ELASKSLNDVMNH 131


>gi|319779902|ref|YP_004139378.1| hypothetical protein Mesci_0155 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165790|gb|ADV09328.1| protein of unknown function UPF0074 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 149

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+      + +L++ A   +      Q+A     + + + + +  L  AGIV + RG  
Sbjct: 6   RLSST----LHILVHMAEKPEQALTSEQLATFIHTNPVVVRRTIAGLRDAGIVTSSRGHG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNA 117
           GG  L R  ++I++ ++  A  E+             C +  +  + +VL      A   
Sbjct: 62  GGWLLGRVPEKISLAEISVALGETLLPFS-TEPESPGCLVEQA--VIAVLDDFRIAAERL 118

Query: 118 FFDVLTQYSIECLVRN 133
             + L++ ++  L  +
Sbjct: 119 LAEKLSRITLADLTAD 134


>gi|291562312|emb|CBL41128.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
           bacterium SS3/4]
          Length = 147

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG- 59
           M    R    + +L + A++ D     +++AE+   +  ++ +++  L K G++ +V+G 
Sbjct: 1   MKYPTRLSDAVHILAFIALYPDCDLTSNKLAESIQTNPAYVRQLMSALRKGGLLVSVKGH 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
            R    L R  ++IT+LD  +A E +  +          C +  +    L          
Sbjct: 61  PR--PALAREPEKITLLDAYRAVEGNKPLLHQDIHTNPACGVGVNIQLVLRDFYLDIQKT 118

Query: 118 FFDVLTQYSIECLVRN 133
               + + +++ ++  
Sbjct: 119 AEQRMQEITLKDVLEQ 134


>gi|21221109|ref|NP_626888.1| hypothetical protein SCO2652 [Streptomyces coelicolor A3(2)]
 gi|6900951|emb|CAB71827.1| hypothetical protein SC8E4A.22 [Streptomyces coelicolor A3(2)]
          Length = 144

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L ++G+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESRRGVGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122
            R    +T+LDV +A E     A    +    C +    G+   +R       +     L
Sbjct: 70  ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPAMRDVYEGIEETVRHEL 127

Query: 123 TQYSIECLVRN 133
            + ++E ++RN
Sbjct: 128 ARVTLEDVLRN 138


>gi|260587960|ref|ZP_05853873.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
 gi|331082470|ref|ZP_08331596.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541487|gb|EEX22056.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
 gi|330400956|gb|EGG80557.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 136

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T+  DYG+R++   A  N     + QI E   ++  F++KIL+ L K  IV++ RG 
Sbjct: 1   MLITRECDYGVRIIRALA--NGDKMCVHQICEQEDLTPAFVYKILKKLEKKEIVKSFRGS 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L     ++T+LD+  A +  F++ EC    K        CG  +   L +     
Sbjct: 59  NGGYALKSSVKELTLLDIYLAVDPEFYMIECMNPQKPCTHNQSDCGCAVHRELARVQQIL 118

Query: 119 FDVLTQYSIECLV 131
              L  +SI  ++
Sbjct: 119 LTELKVHSIAEII 131


>gi|167006390|ref|YP_001661613.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1]
 gi|166162472|gb|ABY83593.1| hypothetical protein pSHK1.124 [Streptomyces sp. HK1]
          Length = 144

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122
            R  + +T+LDV +A E     A   A+   +C +    G+   ++       +     L
Sbjct: 70  ARELESMTLLDVYEAVEPGPLFAMHRATPDPECVVGH--GIQPAMQSIYEGIEETVRHEL 127

Query: 123 TQYSIECLVRN 133
            + ++  ++++
Sbjct: 128 ARVTLANVLQD 138


>gi|116334813|ref|YP_796340.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116100160|gb|ABJ65309.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
           ATCC 367]
          Length = 144

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 3/141 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L+Y  I        + IA +   +   + +++  + KAG++ +  G 
Sbjct: 1   MKYSHKLSDAIHILVYVQIAPTGQLDSATIANSVEANPSVVRRLMAAMKKAGLLMSRAG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
               RL RPA QIT+  V  A E +  +        IDCP+  +    L     +   A 
Sbjct: 60  TAEPRLARPASQITLQAVFHAVEMNHDLLHVDPQTNIDCPVGANIQQALDEAYARVQQAA 119

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L + +++ +V     +++
Sbjct: 120 EAELAKLTVQDIVDRVQGLRQ 140


>gi|294818112|ref|ZP_06776754.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
           clavuligerus ATCC 27064]
 gi|294322927|gb|EFG05062.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 143

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  ++    +      QIA +   + + + ++L  L + G+V++ RG   G  L
Sbjct: 10  AAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWML 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVL 122
            R    IT+LDV +A E     A   A+   +C +    G+  VL  A +    A    L
Sbjct: 70  SRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGR--GIAPVLGAAYDGVEAALRAEL 127

Query: 123 TQYSIECLVRN 133
            + ++E ++R+
Sbjct: 128 ARTTLEDVLRD 138


>gi|227523176|ref|ZP_03953225.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
 gi|227089650|gb|EEI24962.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
          hilgardii ATCC 8290]
          Length = 159

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L    +  + +L+  A+  D+ P +   I+    +S+ +L K+L  +V  G++ +  G
Sbjct: 1  MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60

Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
          + GG  L    +++T+LDV  A E    + 
Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90


>gi|254387868|ref|ZP_05003106.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
 gi|326446779|ref|ZP_08221513.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701593|gb|EDY47405.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
          Length = 146

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  ++    +      QIA +   + + + ++L  L + G+V++ RG   G  L
Sbjct: 13  AAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSRRGTGAGWML 72

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN----AFFDVL 122
            R    IT+LDV +A E     A   A+   +C +    G+  VL  A +    A    L
Sbjct: 73  SRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGR--GIAPVLGAAYDGVEAALRAEL 130

Query: 123 TQYSIECLVRN 133
            + ++E ++R+
Sbjct: 131 ARTTLEDVLRD 141


>gi|124514978|gb|EAY56489.1| putative transcriptional regulator, BadM/Rrf2 family
           [Leptospirillum rubarum]
          Length = 159

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
                   + +AE+     + + +IL  L KAG+V + +G+ GGV L +  + I++L++ 
Sbjct: 42  KKGEWVNSAHLAESVNTHPVVVRRILGDLRKAGLVISQQGKNGGVALGKRPEDISLLEIF 101

Query: 80  KAT-EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLV 131
           +A  EES F           CP+  +    +  V R    A    L +  +  L+
Sbjct: 102 RAVGEESVFAFN-PNPPNPKCPVSVNMFRLIEPVFRAVGVALEKELDRIRLSDLI 155


>gi|330685745|gb|EGG97380.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis
           VCU121]
          Length = 158

 Score = 85.0 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 9/150 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++K  + GI VL+  A        +   ++E   +S+  L KIL+ LV A ++ +   
Sbjct: 1   MKISKHFEQGIYVLLILATQEGQGAVKSQTLSEKLEVSDSSLKKILRKLVVADLITSNAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-------KIDCPLVGSCGLTSVLR 112
           + GG +L R  + IT+ DV++A   +  V E   SH                  +   L 
Sbjct: 61  KDGGFQLNRSIEDITLKDVIEAI-SNGDVIEYEISHLSRRIFFNDQHIKDSEMKVKQQLN 119

Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
            A+ AF + L +  +  L+ +     K+ +
Sbjct: 120 YAIQAFNEKLNELPLVELLEDEYFKHKLVD 149


>gi|224477582|ref|YP_002635188.1| hypothetical protein Sca_2098 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422189|emb|CAL29003.1| hypothetical protein SCA_2098 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 173

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    +  L+  A   +       +AE+   + + +  + + L  A ++   RG 
Sbjct: 1   MRVSTQFPIAVHALLMIAYFPNIRVTSDMVAESVGKNPVIIRNVYKKLKDADLLTVQRGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
            G   L RPA +IT+ D+ KA E      + +   +    C + GS    LT  L++A++
Sbjct: 61  -GTTELIRPASKITLWDIYKAVETDQIDEIFKFPETLSGVCTVGGSIRELLTIHLQEAID 119

Query: 117 AFFDVLTQYSIECL 130
              + L++ ++E L
Sbjct: 120 ELKNALSKTTVEEL 133


>gi|308068789|ref|YP_003870394.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858068|gb|ADM69856.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 144

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++      I  L+  A         S IA +   + + + +I+  L +AG+V++  G RG
Sbjct: 1   MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGARG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120
             RL   +  I +  + +AT++   +         +C +  +    L  +   A      
Sbjct: 61  -FRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119

Query: 121 VLTQYSIECL 130
                ++  L
Sbjct: 120 FFETVTLRDL 129


>gi|310641709|ref|YP_003946467.1| rrf2 family transcriptional regulator protein [Paenibacillus
           polymyxa SC2]
 gi|309246659|gb|ADO56226.1| Rrf2 family transcriptional regulator protein [Paenibacillus
           polymyxa SC2]
          Length = 144

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++      I  L+  A         S IA +   + + + +I+  L +AG+V++  G RG
Sbjct: 1   MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGARG 60

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFD 120
             RL   +  I +  + +AT++   +         +C +  +    L  +   A      
Sbjct: 61  -FRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119

Query: 121 VLTQYSIECL 130
                ++  L
Sbjct: 120 FFETVTLRDL 129


>gi|313109618|ref|ZP_07795565.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882067|gb|EFQ40661.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 142

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H + P     I +    + + + + +  L   G V + +G R
Sbjct: 6   RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA---- 117
           GG RL +P   IT+LD+ +A   S   A   ++   +C +  +  +   L +A  A    
Sbjct: 61  GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQA--VNEALGEAFEAAQAL 118

Query: 118 FFDVLTQYSIECLVRN 133
               L   ++E L   
Sbjct: 119 LLGRLGSVTLEQLASE 134


>gi|118478673|ref|YP_895824.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
           str. Al Hakam]
 gi|118417898|gb|ABK86317.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
           str. Al Hakam]
          Length = 137

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
             ++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|324993812|gb|EGC25731.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK405]
 gi|324994867|gb|EGC26780.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK678]
          Length = 143

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 3   TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 60

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++++L++  AT+E     + +   +   +CP+  +    ++ +   A      
Sbjct: 61  QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 120

Query: 121 VLTQYSIECLVRN 133
            L+  +++ ++ N
Sbjct: 121 ALSHQTLDDVINN 133


>gi|116255261|ref|YP_771094.1| hypothetical protein pRL110061 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259909|emb|CAK03003.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 151

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H  +      IA+    + + + + +  L + G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L RP   IT+LDV  A  E    A   A  +  C +  +    L   +++A     
Sbjct: 61  GGWTLVRPLSDITLLDVYNAIGEPHLFAIGPADDQPQCLVEQAVNVALGDAMKEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
             L   +++ +  +
Sbjct: 121 RRLDSVTLDKIAAD 134


>gi|329767570|ref|ZP_08259091.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341]
 gi|328839197|gb|EGF88781.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341]
          Length = 167

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLTK T+  I +++   + + +      +I++   IS  +L KI++ LV   +V+   G
Sbjct: 1   MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111
             GG +  +   ++T+ D+  A  +   +     +  +     G+          L  V 
Sbjct: 61  IGGGYK-YKSNKKVTLYDIYVALNDEVEIFA-LKTDYVSKIFEGALAVDKRYSKYLKKV- 117

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
                A    L + +IE LV +
Sbjct: 118 NTVNKAIKASLEEITIENLVED 139


>gi|58337328|ref|YP_193913.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
 gi|58254645|gb|AAV42882.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
          Length = 153

 Score = 84.6 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + K  +    VL+  A+   + P +   +++   +S+ +L KIL  L    ++     
Sbjct: 1   MKINKSVEQATYVLLILALQKKHTPLKSRVLSKTMGVSDSYLKKILMMLKHNELITASAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATE---ESFFVAECFAS--HKIDCPLVGSCGLTSVLRKA 114
           ++ G +L RP D+I++ DV+ A E             +     D        + + L+  
Sbjct: 61  KKVGYQLARPIDEISLKDVLYALELNHNQIEFNHLANNIFDDQDHVEESENKIINTLQAG 120

Query: 115 LNAFFDVLTQYSIECLVRN 133
           L++F+D L +  +  L+++
Sbjct: 121 LSSFYDELDELKLSDLLKD 139


>gi|89096880|ref|ZP_01169771.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088260|gb|EAR67370.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 141

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+  A + +     +++A+       FL KIL+ LVK G+V+   GR GG  L +P
Sbjct: 17  ALQALLIMADN-EGLCPSARLADKIGSESGFLRKILRNLVKEGLVQAKEGRDGGYFLAKP 75

Query: 70  ADQITILDVV---KATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            + I + DV    +A E            ECF      C      GL     +      +
Sbjct: 76  PEDIRLSDVYAGMRA-EPFSKGFLDVSSKECFE----PCTRSALSGLK---NEMEQWILN 127

Query: 121 VLTQYSIECLVRNR 134
            L + +++ L+  +
Sbjct: 128 GLEEKTLKDLMGKK 141


>gi|317508384|ref|ZP_07966057.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974]
 gi|316253341|gb|EFV12738.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974]
          Length = 147

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++ A   + P    +IA     + + + + +  L + G+V + +G  GG  L R 
Sbjct: 10  ALHTLLHLAS-KEEPMTSERIAAHLGTNAVVVRRTMAGLREHGLVASAKGHGGGWTLARS 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAFFDVLTQYSI 127
            +++T+ DV +A                 C    +           A           ++
Sbjct: 69  LEKLTLFDVYRAVGSPNMFTMIRDEPDHPCMAARAVQTKLAESFDSAEALLLAAFGNITL 128

Query: 128 ----ECLVRNRSSIKKI 140
                 L  +  S + +
Sbjct: 129 AALRADLAHDPQSDEGV 145


>gi|324327310|gb|ADY22570.1| rrf2 family protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 137

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
             ++ +  + + T E +    +C  S+   C +  +    L ++   A       L  Y+
Sbjct: 68  LSEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGKYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|227552744|ref|ZP_03982793.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257897331|ref|ZP_05676984.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378906|ref|ZP_06625061.1| transcriptional regulator [Enterococcus faecium PC4.1]
 gi|293572813|ref|ZP_06683767.1| transcription regulator [Enterococcus faecium E980]
 gi|227178144|gb|EEI59116.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257833896|gb|EEV60317.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|291607163|gb|EFF36531.1| transcription regulator [Enterococcus faecium E980]
 gi|292642447|gb|EFF60602.1| transcriptional regulator [Enterococcus faecium PC4.1]
          Length = 155

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I VL Y  +  D        IA +   +   + KI+  L K+G++ T  
Sbjct: 1   MKYSLQFSD-AIHVLAYIEMFQDTRLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G+     L +  DQI++LDV ++ E +  + +       +C +  +    L     +   
Sbjct: 60  GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + + + +++ L+   + ++K
Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141


>gi|78063394|ref|YP_373302.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77971279|gb|ABB12658.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 163

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L   G V++ +G  
Sbjct: 23  RLSRM----LHALIHM-DQVDGPMTSEAIATMLCTNPVVVRRLLGGLRDRGYVQSEKGHG 77

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++     + +C +  +    L++ L++A     
Sbjct: 78  GGWVLSVALDDITLLDVYRAVGEPPLFSDLVTDDEAECLVEQAVNAHLSATLKEAETTLL 137

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 138 ARFGEVTLGMLSRD 151


>gi|257888713|ref|ZP_05668366.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257824767|gb|EEV51699.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
          Length = 155

 Score = 84.2 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I VL Y  +  D        IA +   +   + KI+  L K+G++ T  
Sbjct: 1   MKYSLQFSD-AIHVLAYIEMFQDTQLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G+     L +  DQI++LDV ++ E +  + +       +C +  +    L     +   
Sbjct: 60  GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + + + +++ L+   + ++K
Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141


>gi|257899894|ref|ZP_05679547.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257837806|gb|EEV62880.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 155

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I VL Y  +  D        IA +   +   + KI+  L K+G++ T  
Sbjct: 1   MKYSLQFSD-AIHVLAYIEMFQDTRLLSSEMIANSIETNAANVRKIMSQLKKSGLILTKT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
           G+     L +  DQI++LDV ++ E +  + +       +C +  +    L     +   
Sbjct: 60  GKP-QPSLAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQK 118

Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
              + + + +++ L+   + ++K
Sbjct: 119 KAEEEMAKITLDSLIHKIAVLEK 141


>gi|255534651|ref|YP_003095022.1| rrf2 family protein (putative transcriptional regulator)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340847|gb|ACU06960.1| rrf2 family protein (putative transcriptional regulator)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 144

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGI+  +Y A  +  +    +  +A +      F  KILQ L +  I+++VRG+
Sbjct: 2   FSKACEYGIKAAIYIAQQSQLNRTVNVKDVALSIDAPVAFTAKILQLLCREEILQSVRGK 61

Query: 61  RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
           +GG         Q  I D+V   +      +C       C     C + +  +   +  F
Sbjct: 62  QGGFFFSEEKQRQFRIYDLVTRIDGDGLFTQC-GLGLQRCSSENPCPVHNDFKIVRDRLF 120

Query: 120 DVLTQYSIECLV 131
           ++ ++++   L 
Sbjct: 121 EMTSKHTFFDLA 132


>gi|255034872|ref|YP_003085493.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
 gi|254947628|gb|ACT92328.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
           DSM 18053]
          Length = 136

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 7   TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             + I   +L   A   D       +A +  I+ + + K L  L + G+V +  G+ GG 
Sbjct: 4   GRFAISVHILTLLAFSEDEWTSSEYLAGSININPVLVRKELGNLRERGLVASKEGKSGGS 63

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVL 122
           RL +PA QI + +V +A  +   + +   S   DCP+    +  L  +   A       L
Sbjct: 64  RLAKPAGQIFMSEVYEAVRQKDLLGKGINSPNPDCPVGRKINDHLDGLYDAAEQTLLASL 123

Query: 123 TQYSIEC 129
            + S+  
Sbjct: 124 GKVSLAE 130


>gi|317496580|ref|ZP_07954929.1| transcriptional regulator [Gemella moribillum M424]
 gi|316913383|gb|EFV34880.1| transcriptional regulator [Gemella moribillum M424]
          Length = 167

 Score = 84.2 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLTK T+  I +++   + + +      +I++   IS  +L KI++ LV   +V+   G
Sbjct: 1   MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVLHDLVKANTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKA-- 114
             GG +  +   ++++ D+  A      +      +     +  L         L K   
Sbjct: 61  VGGGYK-YKANKKVSLYDIYVALNGEVEIFVLKTDYVSKIFEGALAVDKRYKKYLNKVNS 119

Query: 115 -LNAFFDVLTQYSIECLVRN 133
              +    L + +I+ LV +
Sbjct: 120 INQSIKKSLEEITIDNLVED 139


>gi|91782956|ref|YP_558162.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91686910|gb|ABE30110.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           xenovorans LB400]
          Length = 151

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  + IT+L+V +A +++   A         C +  +    L  ++ +A  A 
Sbjct: 61  GGGALLARAPEHITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L   ++  
Sbjct: 121 EASLGARTLAD 131


>gi|227543670|ref|ZP_03973719.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908730|ref|ZP_07126193.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
           SD2112]
 gi|227186354|gb|EEI66425.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894137|gb|EFK87495.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
           SD2112]
          Length = 150

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L Y  ++ +       IA++   +   + +++  L  AG++ T +G 
Sbjct: 1   MKYSYKLSDAVHLLSYLHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
               RL +   +I + D+ +A      +        + C + G+    L     +   A 
Sbjct: 61  A-EPRLAKKPREINLFDIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAA 119

Query: 119 FDVLTQYSIECLVRN 133
           F+ + Q S+  ++ +
Sbjct: 120 FNEMKQISLADVIDD 134


>gi|88797874|ref|ZP_01113462.1| hypothetical protein MED297_12000 [Reinekea sp. MED297]
 gi|88779551|gb|EAR10738.1| hypothetical protein MED297_12000 [Reinekea sp. MED297]
          Length = 152

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L++ A   D P    ++A+    +   + + +  L +  IV++ +G  GG +L +  
Sbjct: 11  IHALLHLAAM-DKPATSERLAQMLQTNPAVVRRTMAGLRRMNIVQSSKGHNGGWQLQKSL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           D+IT+ D+ +A E     A         C    V +  + + +  A + F   L Q +++
Sbjct: 70  DEITLADLYEALETPQLFALTAGDEHPTCLVEQVANRSVQAAMTAASDVFLTHLRQVNLK 129

Query: 129 CL 130
            L
Sbjct: 130 QL 131


>gi|261885524|ref|ZP_06009563.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
          subsp. venerealis str. Azul-94]
          Length = 123

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
             P  +  I++   +S+ +L ++L  L   G V +++G +GG  L +  D+IT  D+  
Sbjct: 9  QKNPVSLKDISQNIGVSKNYLEQVLNTLRNTGFVSSIKGLKGGYFLNKTLDEITFYDIFY 68

Query: 81 ATEESFFVAECFASHK 96
          A E  F +      H 
Sbjct: 69 ALENDFGLTSLNVEHS 84


>gi|28379895|ref|NP_786787.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|254558035|ref|YP_003064452.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300769029|ref|ZP_07078919.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308182109|ref|YP_003926237.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28272736|emb|CAD65665.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|83778489|gb|ABC47132.1| putative transcriptional regulator [Lactobacillus plantarum]
 gi|254046962|gb|ACT63755.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|300493441|gb|EFK28619.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047600|gb|ADO00144.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 141

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T+ +D    ++ Y A+H D   +   IA +       + +++  L KAG++ +VRG    
Sbjct: 4   TQLSD-ATHIMAYIALHTDDQLKSEHIASSLNTDPTMVRRMMSKLRKAGLLTSVRGVA-R 61

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFF 119
             L    + IT+ D+  A            +    CP+     +  V+ K      N+  
Sbjct: 62  PTLACSPNDITLKDIYVAVVAKRNFLNVDHNTSETCPVGSV--IPRVMEKYYCDIQNSAE 119

Query: 120 DVLTQYSIECLVRNRSSIKK 139
             +++ +++ ++ + S++++
Sbjct: 120 ARMSRVTLQDIIDDISAVQQ 139


>gi|296448174|ref|ZP_06890072.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
 gi|296254305|gb|EFH01434.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
           trichosporium OB3b]
          Length = 148

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L +     +   +  A+H+   P     +A    +    L  +LQ +V+AGI+++VRG  
Sbjct: 4   LPRSARLALMAALDVALHSRARPVSSRALAARHELPPRHLESMLQAMVRAGILKSVRGPS 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L +   ++ + ++V+       +     ++  + P + S  +  V  +A       
Sbjct: 64  GGYELAKERRRLCVGEIVR-----VALRAEEEANGAESPRLLSSVIDPVFAEAERLALAR 118

Query: 122 LTQYSIECL 130
           L + +++ L
Sbjct: 119 LDEITLDSL 127


>gi|241889351|ref|ZP_04776652.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
           ATCC 10379]
 gi|241863894|gb|EER68275.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
           ATCC 10379]
          Length = 167

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MHLTK T+  I +++   + + +      +I++   IS  +L KI++ LV   +V+   G
Sbjct: 1   MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--------LTSVL 111
             GG +  +   ++T+ DV  A  +   +     +  +     G+          L  V 
Sbjct: 61  IGGGYK-YKSNKKVTLYDVYVALNDEVEIFA-LKTDYVSKIFEGALAVDKRYSKYLKKV- 117

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
                A    L + +IE LV +
Sbjct: 118 NTVNKAIKSSLEEITIENLVED 139


>gi|229826970|ref|ZP_04453039.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC
           49176]
 gi|229788588|gb|EEP24702.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC
           49176]
          Length = 146

 Score = 83.8 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L+  +   + P    QIA +   +  ++ K+   L KA I+E  RG  G   L + 
Sbjct: 8   AIHTLILIS-EAEVPMSSEQIAGSVGTNASYIRKLTTRLSKAEIIEGRRGVSG-FTLKKK 65

Query: 70  ADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125
             +IT+LD+ KA  E     + +   +    C +  +    L+ + ++        L   
Sbjct: 66  PSEITLLDIYKAVMEVNEIHIFDIHQNSNDMCVVGQNIKPVLSGMFKEMEEQVEMQLKAM 125

Query: 126 SIE---CLVRNR 134
           ++E    +++N 
Sbjct: 126 TLENCMDIMKNN 137


>gi|304408505|ref|ZP_07390143.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342512|gb|EFM08368.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 142

 Score = 83.8 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACC-ISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            +  L+Y A   +       +A+     S     +  + L K+G V T  G  GG RL  
Sbjct: 8   AVHSLVYLAYVPERMASSEALADNVGHASSSH-SQSDERLRKSGYVATREGAGGGYRLTA 66

Query: 69  PADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLT 123
             +++++ D+ +   + S   + C    ++DC +  +  +  V+      A         
Sbjct: 67  EPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSN--MKQVMFGIFCTAEKRLETHFN 124

Query: 124 QYSIECLV 131
             +I  ++
Sbjct: 125 AITIRDVL 132


>gi|294791271|ref|ZP_06756428.1| Rrf2 family protein [Scardovia inopinata F0304]
 gi|294457742|gb|EFG26096.1| Rrf2 family protein [Scardovia inopinata F0304]
          Length = 150

 Score = 83.5 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + +    + +++Y AI HN        IA++   +   + KI+  L KAG++ + RG
Sbjct: 5   MKQSVQLSDSVHIMLYLAIKHNPDQLTSEAIAQSVNTNPSAVRKIMSNLKKAGLISSHRG 64

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----AL 115
           +     + RP   IT+LD+  +   +  + +        CP+  +  + +VL +      
Sbjct: 65  KA-DPVIIRPLKDITLLDIFHSLPGTNDLLQPDRHTSRSCPVGAN--IQTVLNEKYHQIQ 121

Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
               D +++ +++ L      I  +   G
Sbjct: 122 LVIEDQMSRITLKELT---DEINGLIGEG 147


>gi|206562460|ref|YP_002233223.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
 gi|198038500|emb|CAR54458.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
          Length = 146

 Score = 83.5 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     +  L++     D P     IA   C + + + ++L  L   G V++ +G  
Sbjct: 6   RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    ++      ++C +  +    L++ L++A  +  
Sbjct: 61  GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDALECLVEQAVNAHLSATLKEAEASLL 120

Query: 120 DVLTQYSIECLVRN 133
               + ++  L R+
Sbjct: 121 ARFGEVTLGMLSRD 134


>gi|294345242|emb|CBL51475.1| putative nitric oxide reductase regulator [Thermus thermophilus]
          Length = 141

 Score = 83.5 bits (206), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
            +      +IAE       F+ K+LQ L KAG+VE+  GR+GGV    P  +I++L V++
Sbjct: 23  EEPGLSALEIAERLKAPPAFMAKVLQKLAKAGLVESRVGRKGGVWPKLPPGEISLLKVME 82

Query: 81  ATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           A      +  C    +  CP     G C L   L +        L   +++ L+     
Sbjct: 83  ALSGPVVLDLCATLKR--CPTEERRGFCYLKPGLARTGLEIRKALAGLTLKDLLPENPP 139


>gi|256852121|ref|ZP_05557508.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260661309|ref|ZP_05862222.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
 gi|282933818|ref|ZP_06339168.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
           208-1]
 gi|297205002|ref|ZP_06922398.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii
           JV-V16]
 gi|256615533|gb|EEU20723.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260547764|gb|EEX23741.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
 gi|281302060|gb|EFA94312.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
           208-1]
 gi|297149580|gb|EFH29877.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii
           JV-V16]
          Length = 142

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 59/143 (41%), Gaps = 3/143 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I  +       IA +   +   + +++  L   G++ET +G+
Sbjct: 1   MKYSYKFSDAIHLLSYLEIFKNGDLSSKAIAASIESNPSIIRQLMSDLRNVGLIETRQGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
               +L R    IT+ ++  A +    +        + CP+  +    L     +  N+ 
Sbjct: 61  A-SAKLTRKPSAITLFEIYMAIDMDHELIHVDPQTNLKCPVGRNIQTSLNGFYEQIQNSA 119

Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
           F+ +   +++ ++ +    +K++
Sbjct: 120 FNQMKAITLQDVIDDILEKEKMY 142


>gi|217960811|ref|YP_002339375.1| rrf2 family protein [Bacillus cereus AH187]
 gi|217065699|gb|ACJ79949.1| rrf2 family protein [Bacillus cereus AH187]
          Length = 137

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+ C+  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            D++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|209546345|ref|YP_002278235.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209539202|gb|ACI59135.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 151

 Score = 83.5 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H  +      IA+    + + + + +  L + G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHQ-HSATSEMIAKMLNTNPVVVRRTMAGLRERGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L RP  +IT+LDV  A  E    A   A  +  C +  +    L   +++A     
Sbjct: 61  GGWTLVRPLWEITLLDVYNALGEPHLFAIGPADDQPKCLVEQAVNSVLQDAMKEAEALLL 120

Query: 120 DVLTQYSIECLVRN 133
             L   ++E +  +
Sbjct: 121 RRLGGVTLEEIAAD 134


>gi|159897735|ref|YP_001543982.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890774|gb|ABX03854.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 139

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +      I + +Y     +          +IA+   I++  + K++Q L  AG++ET
Sbjct: 1   MSYSLAFSQAIAISLYITYKIEEQIYDFVPTHEIADFLGIAKPSVVKVVQSLTNAGLIET 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKA 114
             G +GGVRL R +  I +LD+  A E++  +       +      L     + + L++A
Sbjct: 61  REGAKGGVRLTRNSQAINLLDIFNAIEQAKPLFRLNIHPTEPKIEALAARQRMVASLQRA 120

Query: 115 LNAFFDVLTQYSIECL 130
             A    L   ++  L
Sbjct: 121 EAAMKQELQAVTLADL 136


>gi|296274609|ref|YP_003657240.1| BadM/Rrf2 family transcriptional regulator [Arcobacter
          nitrofigilis DSM 7299]
 gi|296098783|gb|ADG94733.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter
          nitrofigilis DSM 7299]
          Length = 137

 Score = 83.5 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 3  LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +  YG+  +     + +  P +  +I+    I + +L ++L  L  AG+V + RG +
Sbjct: 4  ISSKGVYGLAAMHELLQNEENKPMQSREISARADIPQSYLEQLLGKLKHAGLVLSTRGSK 63

Query: 62 GGVRLCRPA 70
          GG  L +  
Sbjct: 64 GGYMLAKDP 72


>gi|158422332|ref|YP_001523624.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329221|dbj|BAF86706.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 146

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
              P     +A    +    L  +LQ LV AG+++ VRG RGG  L R   ++++ ++V+
Sbjct: 23  RGTPVAAKSLAARHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVR 82

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
             E +    E         PLV    +   +  A   F   L   ++E L R    
Sbjct: 83  VVEGAEEEKEIILP-----PLVTE-VVQPAVAAAEQTFDTALDTVTLEDLCRAADQ 132


>gi|302557214|ref|ZP_07309556.1| transcriptional regulator superfamily protein [Streptomyces
           griseoflavus Tu4000]
 gi|302474832|gb|EFL37925.1| transcriptional regulator superfamily protein [Streptomyces
           griseoflavus Tu4000]
          Length = 144

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD----VL 122
            R  + +T+LDV +A E     A    +    C +    G+  V++       +     L
Sbjct: 70  ARELESMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGH--GIQPVMQGIYEGIEETLRHEL 127

Query: 123 TQYSIECLVRN 133
            + ++E ++R+
Sbjct: 128 ARVTLENVLRD 138


>gi|330718798|ref|ZP_08313398.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc fallax KCTC
           3537]
          Length = 131

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L Y AI+ ++    +QIA++   + + + +I+  L KA ++ +  G+
Sbjct: 1   MKNSTKLSDAMHILTYIAINPNHDLSSTQIAQSVNSNPVVIRRIMSQLKKANLLLSENGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
                L   +  I++LDV  A E      +       +CP+     + +VL 
Sbjct: 61  A-TPSLAHDSHNISMLDVYHAVENEPTFLKIDDQTNPNCPIGSQ--IKTVLD 109


>gi|148555080|ref|YP_001262662.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500270|gb|ABQ68524.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
           RW1]
          Length = 152

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P     +A+A     + + +++  L + G+V + +G  GG  + RP 
Sbjct: 11  LHVLLHMAEQ-DGPVTSEVLAKAMDTHPVVVRRVMAGLREQGLVRSEKGHGGGWTIARPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           D IT+ D+  A      +A    +    C +  +    L      A         + ++ 
Sbjct: 70  DGITLRDIYGALGGPSLLAMGHRTEAPGCLVEQAVNAALGRAFHDAEALLLARFGEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 MLSAD 134


>gi|49478477|ref|YP_037503.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49330033|gb|AAT60679.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 137

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L Y A+  D  +  + I+E+  +  + + K+L  L K   +++  G  GG    R 
Sbjct: 8   AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLGLLKKHKFIQSKEGTGGGFIFARD 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
            D++ +  + + T E +    +C  S+   C +  +    L ++   A     + L  Y+
Sbjct: 68  LDEVNLWHIYQITSEGALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEYLGEYLKNYT 125

Query: 127 IECLVR 132
           ++ +V 
Sbjct: 126 MKEVVD 131


>gi|126736518|ref|ZP_01752259.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
 gi|126714056|gb|EBA10926.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
           sp. CCS2]
          Length = 124

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A  + +    + IA+    + + + ++L  L +AG++ + +G  GG RL R A  IT+ 
Sbjct: 1   MAADSKHMRTSADIADHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLARAAQDITLA 60

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130
           DV  A +E   VA         C +       +T+V+ +   +  + L++ +I  +
Sbjct: 61  DVYLALDERL-VASSPNDDVPTCVVEHRLQNKITAVMEEIERSLIERLSKTNIAEV 115


>gi|145589828|ref|YP_001156425.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048234|gb|ABP34861.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 195

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M +TK     +  L+  A H+       + +IA+   +S   +  +L+PL ++G+V  ++
Sbjct: 1   MEVTKAVKVALNTLVDIASHSNKGQLVTVPEIAQRLNMSISRIELLLRPLRESGLVIGIK 60

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA- 117
           GR GG +L +    ITI D+V A             +KI    V    +   L ++L A 
Sbjct: 61  GRTGGYQLSKDPRIITIKDIVLAM------------NKIKKRKVEVSDIAKDLYQSLEAY 108

Query: 118 FFDVLTQYSIECLVRN 133
             + ++  ++   +++
Sbjct: 109 MMNCISNVTLASAIKD 124


>gi|90420066|ref|ZP_01227974.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335400|gb|EAS49150.1| possible transcriptional regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 155

 Score = 83.1 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P    Q+A+A   + + + +I+  L   G+V + +G  GG  + +  
Sbjct: 11  LHVLLHMA-ETDGPVTSEQLAKAMQTNPVVIRRIMAGLRNQGLVRSTKGHGGGWTIAKEL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+ +A     F A    +    C +  +    +     +A     + L + ++ 
Sbjct: 70  STVTLRDIYEALGSPEFFAMGNRTEAPGCLVEEAVNAAMDDTFARAEALLLERLGEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|309777294|ref|ZP_07672256.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914974|gb|EFP60752.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 138

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +    +  I +++  +  +  P + S++++   +S+ +L KI++ LVKA IV ++  +
Sbjct: 1   MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLDVSDSYLKKIMRQLVKANIVSSIASK 59

Query: 61  RGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
            GG  L R   QIT LD+  A E       S  + +     +          +   L  A
Sbjct: 60  TGGFVLLRSPSQITFLDLFNAIEGEEEFAVSTSLVDKVFDSRKQ-VKEKERQIMHYLYGA 118

Query: 115 LNAFFDVLTQYSIECLVRN 133
              +   L + +I+ ++ +
Sbjct: 119 ELEYRKKLKEITIQQILTD 137


>gi|284029052|ref|YP_003378983.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
           17836]
 gi|283808345|gb|ADB30184.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
           17836]
          Length = 144

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHTLAWIGLYQRQGHEVATSEQIAGSANTNPVVIRRLLGELREAGLVESRRGAGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
            R    IT+LDV  A E     A   A+    C +       L  V           L++
Sbjct: 70  TRDLASITLLDVYDAIEPGPLFALHRANPDDGCVVGHGIQPALHDVYAGIECTVRTELSK 129

Query: 125 YSIECLVR 132
            ++E +++
Sbjct: 130 TTLEDVLQ 137


>gi|296158734|ref|ZP_06841563.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
 gi|295890939|gb|EFG70728.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
           Ch1-1]
          Length = 151

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L +AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R  + I++L+V +A +++   A         C +  +    L  ++ +A  A 
Sbjct: 61  GGGALLARAPEHISLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120

Query: 119 FDVLTQYSIEC 129
              L   ++  
Sbjct: 121 EASLGARTLAD 131


>gi|116333404|ref|YP_794931.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116098751|gb|ABJ63900.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
          ATCC 367]
          Length = 168

 Score = 82.7 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 8  DYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +  + ++ +  I +   P   S +AE   IS  +L KI+Q L    IV+TV GR GG+ L
Sbjct: 8  EQALCIVAFLGIQDRQIPLHSSLVAERLGISTSYLKKIVQRLAAGKIVKTVSGRVGGIVL 67

Query: 67 CRPADQITILDVVKATEESFFVA 89
           R    IT+LD+  A E      
Sbjct: 68 TRNPHDITLLDIFDAIEGPQSFV 90


>gi|239947324|ref|ZP_04699077.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921600|gb|EER21624.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 107

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+    IS  +L +I   L KA +V+ +RG +GG  L    ++I I D++ A  E+F + 
Sbjct: 18  ISVKQNISLNYLEQIFSKLKKADLVKAIRGLKGGYILIGNLEEIKISDIMDAVNENFIMT 77

Query: 90  ECFASHKIDC-PLVGSCGLTSVLR 112
            C+      C P    C    + +
Sbjct: 78  TCYKKSVKTCVPBTIKCNSHKLWK 101


>gi|255283024|ref|ZP_05347579.1| Rrf2 family protein [Bryantella formatexigens DSM 14469]
 gi|255266326|gb|EET59531.1| Rrf2 family protein [Bryantella formatexigens DSM 14469]
          Length = 150

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T R    I  ++  A +        + +A +       + ++L  L  AG V+   G
Sbjct: 1   MQITSRFTVAIHTMLCIAHYEGKKKMTSAALAGSTGADATIIRRLLGQLQTAGYVKVNAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
             GG  L +P   IT+LD+ +A + E+  +   + +    CP+  +  + SVL     + 
Sbjct: 61  V-GGAHLIKPLKDITLLDLFRAVDAETRNLFRFYENPDCVCPVGNN--IHSVLDGHLCEV 117

Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
             A ++ + + +++ L      +
Sbjct: 118 QQAMYNKMQEINLQTLYEEIEPL 140


>gi|329114382|ref|ZP_08243144.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001]
 gi|326696458|gb|EGE48137.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001]
          Length = 149

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            + +++  A H         + IAE   ++   +  +LQ L ++G++E++RG RGG RL 
Sbjct: 11  AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   I ++D+++A   +   A       +   ++  C       K        + + ++
Sbjct: 71  RPRRDIALVDIIEAVLNTDTDANDGPQGALFQKVLAPC-----WDKFDQKLITQMGKTTL 125

Query: 128 ECLVRNRSS 136
           + LV+   S
Sbjct: 126 DDLVKQAES 134


>gi|302387002|ref|YP_003822824.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302197630|gb|ADL05201.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 141

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +  T   I +L+Y                 I+E   I    + KI+  L  AGI++ 
Sbjct: 1   MAYSSATYQAISILIYIHYKIRAELYNYLSNRVISEQLNIPAPTVVKIMGKLKSAGIIDV 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKA 114
             G +GG  L +P   IT+ DV  A E    + +      +D  +       ++  L +A
Sbjct: 61  REGMKGGNMLAKPLTDITLFDVFDAMERGNPMFKIHRGFHLDYDIFEGIVEKTINSLEEA 120

Query: 115 LNAFFDVLTQYSIECLV 131
             A    L +  +  L+
Sbjct: 121 EKAMITYLKKTRLSDLI 137


>gi|239813117|ref|YP_002942027.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
 gi|239799694|gb|ACS16761.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           S110]
          Length = 153

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   + P     +A A     + + +++  L +AG V + +G  GG  L  P 
Sbjct: 11  LHALLHMA-EMEGPVTSESLAMAMQTHPVVVRRVMAGLREAGFVSSAKGHGGGWVLSCPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           D +T+ D+ +A      +A    +    C +  +    L    R+A     +     ++ 
Sbjct: 70  DAVTLGDIHQAVGSPALLAMGNRTESPGCIVEQAVNAALDGACREAEALLLERFNSITLA 129

Query: 129 CLVRN 133
            L R+
Sbjct: 130 DLSRD 134


>gi|325696168|gb|EGD38059.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK160]
 gi|327460971|gb|EGF07304.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1057]
          Length = 160

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 20  TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 77

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++++L++  AT+E     + +   +   +CP+  +    ++ +   A      
Sbjct: 78  QLGKIPKKMSLLEIYYATQEVKHISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 137

Query: 121 VLTQYSIECLVRN 133
            L   +++ ++ N
Sbjct: 138 ALRHQTLDDVINN 150


>gi|315185408|gb|EFU19180.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
           thermophila DSM 6578]
          Length = 145

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +Y +  L + +          ++A +  + E  L KILQ L +AG++  V+G  GG  L 
Sbjct: 19  EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGAHGGYVLE 77

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
           R   ++TI +V +A +E   +  C    +  C +   C +  
Sbjct: 78  RSLSELTIGEVARALDERV-ILPC---GRDGCEVPEFCVMRP 115


>gi|332188880|ref|ZP_08390586.1| transcriptional regulator family protein [Sphingomonas sp. S17]
 gi|332011089|gb|EGI53188.1| transcriptional regulator family protein [Sphingomonas sp. S17]
          Length = 145

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L   A H D P R   IA +   +   +  +L  L  AG+  +  G RGG  L RP+ +
Sbjct: 1   MLALLADHGDMPLRSEDIAASVNSNAAVVRALLLRLASAGLTRSQLGNRGGAMLARPSSE 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130
           I ++DV  A E+  F A      + + P+       L ++L     A  + L   +++ +
Sbjct: 61  IRLVDVYHAVEDRNFFAFHRQPPEGESPIDRHITPSLEAMLTPVREALEEKLADLTLDDV 120

Query: 131 ---VRNRSSIKKI 140
              +R R+ + +I
Sbjct: 121 LTDIRARAGVSQI 133


>gi|224499981|ref|ZP_03668330.1| transcription regulator [Listeria monocytogenes Finland 1988]
 gi|254830570|ref|ZP_05235225.1| hypothetical protein Lmon1_04387 [Listeria monocytogenes 10403S]
 gi|255026916|ref|ZP_05298902.1| hypothetical protein LmonocytFSL_12321 [Listeria monocytogenes FSL
           J2-003]
 gi|284800722|ref|YP_003412587.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578]
 gi|284993908|ref|YP_003415676.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923]
 gi|284056284|gb|ADB67225.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578]
 gi|284059375|gb|ADB70314.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923]
          Length = 161

 Score = 82.3 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L KA ++ T  
Sbjct: 7   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKADLITTQT 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G+     L RP ++I++LDV K+ E +  +         DC +  +    LTS       
Sbjct: 66  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 124

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
                + +  ++ +VR+ S ++
Sbjct: 125 KIEFEMEKIKLDSIVRDISVLE 146


>gi|294787028|ref|ZP_06752282.1| Rrf2 family protein [Parascardovia denticolens F0305]
 gi|315226673|ref|ZP_07868461.1| Rrf2 family transcriptional regulator [Parascardovia denticolens
           DSM 10105]
 gi|294485861|gb|EFG33495.1| Rrf2 family protein [Parascardovia denticolens F0305]
 gi|315120805|gb|EFT83937.1| Rrf2 family transcriptional regulator [Parascardovia denticolens
           DSM 10105]
          Length = 173

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           ++     ++ P    QIA +   +  ++ K+   L K GI+E  R   G  R+ R  + I
Sbjct: 1   MLILISESEAPMNSDQIAASVGTNASYIRKLTTRLSKTGIIEGHRSVSG-FRMVRTPEDI 59

Query: 74  TILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIEC 129
           T+LD+ ++  E     + +   + K  C +  +    L+ + R    +    L   ++  
Sbjct: 60  TLLDIYRSVMETDELHLFDLHQNPKDACIVGHNIRPVLSGMFRDMEESMERRLRGKTLAD 119


>gi|238062427|ref|ZP_04607136.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237884238|gb|EEP73066.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 141

 Score = 81.9 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 1   MHLTKRTDYGIRVL--MYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M    R       L  +  A  H        ++A +   + + + + L  L +AG+V   
Sbjct: 1   MAANSRVTIAAHALAWLELARRHGREVLTSEEVAASVNTNAVIVRRSLGDLQRAGLVRAR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
           RG   G  L RPA +IT+LDV  A      +A   +   ++C +       LT +  +A 
Sbjct: 61  RGNGAGFSLGRPATEITLLDVWLAVSPEPLLALHHSEPNLECQVGRGIRPVLTDLYDEAT 120

Query: 116 NAFFDVLTQYSIECLVRN 133
           N F   L ++++  ++  
Sbjct: 121 NTFRAALARWTVNDVLER 138


>gi|313677740|ref|YP_004055736.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
           DSM 4126]
 gi|312944438|gb|ADR23628.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
           DSM 4126]
          Length = 147

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 3   LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++K++ Y I  L++    + + P  IS IAE   I + FL  IL  L   GI+ + +G+ 
Sbjct: 2   ISKKSKYAINALVHLGRKYGEGPTLISTIAEEESIPQKFLEAILLELKNDGILGSKKGKG 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
           GG  L +  + + +  V++  + +  +  C    F     +C    +C +     K  N 
Sbjct: 62  GGYYLRKDPETVNLAQVLRLFDGAIALLPCVTFKFYECCEECKDEETCSIREAFLKVRNE 121

Query: 118 FFDVLTQYSIECLVRNRSSI 137
              +    +++ L+     +
Sbjct: 122 TVKIFKGQTLKGLLDREKKL 141


>gi|296124240|ref|YP_003632018.1| hypothetical protein Plim_4008 [Planctomyces limnophilus DSM 3776]
 gi|296016580|gb|ADG69819.1| protein of unknown function UPF0074 [Planctomyces limnophilus DSM
           3776]
          Length = 187

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 5   KRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            R      VL Y A   +         ++  +     + + ++L  L KAG++ET RG  
Sbjct: 3   TRFTVAAHVLGYLAWQGEQGVEWVSSDELGRSINTHSVVVRRLLTQLQKAGLIETRRGAS 62

Query: 62  GGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
           GG RL RPA  I + +V  A     +  ++      + +C +       L  V+ +A   
Sbjct: 63  GGSRLARPASAIHLGEVFDAVVESGTSLISFPREVERDECLVGEHIEAVLREVIAEAEAV 122

Query: 118 FFDVLTQYSIEC 129
           F   L + S+  
Sbjct: 123 FRRNLGRTSVAE 134


>gi|258612017|ref|ZP_05711748.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293596338|ref|ZP_05230752.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293596971|ref|ZP_05266116.2| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300766416|ref|ZP_07076372.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017]
 gi|258607723|gb|EEW20331.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584310|gb|EFF96342.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293594995|gb|EFG02756.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300512882|gb|EFK39973.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017]
          Length = 182

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L K+ ++ T  
Sbjct: 28  MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 86

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L RP ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 87  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 143

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ +VR+ S ++
Sbjct: 144 QQKIEFEMEKIKLDSIVRDISVLE 167


>gi|126651648|ref|ZP_01723851.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905]
 gi|126591597|gb|EAZ85703.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905]
          Length = 134

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I VL   +   D      +IA +   + + + +I   L KAGI+ +  G  G   L R 
Sbjct: 9   AIHVLSLIST--DSTLSSEKIASSVNTNPVVIRRISSDLKKAGILTSKVGVPG-SSLTRD 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
              IT+ D+ KA      +     +   DC +       L         A  + L   ++
Sbjct: 66  PSDITLFDIYKAVHLEKELFPIHNNPNPDCHVGKKIQHTLNVTFESVQTAMENELKNKTL 125

Query: 128 ECLVRN 133
           E ++ +
Sbjct: 126 ESVMNH 131


>gi|329847412|ref|ZP_08262440.1| transcriptional regulator family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842475|gb|EGF92044.1| transcriptional regulator family protein [Asticcacaulis
           biprosthecum C19]
          Length = 151

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  ++R       L Y A  N    +     S +A +   + + + ++   L KAG+V T
Sbjct: 1   MSDSQRFPVAAHTLAYLAHRNAYSREAAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVAT 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
             G  GG  L +  + I + +V++A      +          CP+  +    + S ++ A
Sbjct: 61  CSGVAGGAWLLKRPEDIRLDEVLRAVNGCAHLGS-APIGAEGCPVSQAIPKAVNSAMQLA 119

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A  + L   ++  L+R+
Sbjct: 120 NQAASEALATVTVADLLRH 138


>gi|325122781|gb|ADY82304.1| hypothetical protein BDGL_001718 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 138

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L++ A  N       +IA+    + + + + +  L +A  V++ +G  GG  L    ++
Sbjct: 1   MLLHMARQN-RSFTSEEIAKMLSTNPVVIRRTMVGLKQANFVQSEKGPGGGWHLIGDIEK 59

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECL 130
           IT+LD+  A  E    A        +C +    +  L S ++ A       L   ++  L
Sbjct: 60  ITLLDIYNAVGEPTIFAMGNERKNPECAVEQVVNAALDSSIQAAQAILIQRLKDTTLADL 119

Query: 131 VRNRSSI 137
            R+   I
Sbjct: 120 ARSFDQI 126


>gi|227890967|ref|ZP_04008772.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741]
 gi|227867376|gb|EEJ74797.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741]
          Length = 153

 Score = 81.9 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ +     ++IA +   +   +  ++  L KAG++    G 
Sbjct: 1   MKHSYKLSDAIHILTYVDIYKNGDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PA +I++LDV +A   +  +         +C +  +    L +V ++  NA 
Sbjct: 61  A-KASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQDTLNNVYQRVQNAA 119

Query: 119 FDVLTQYSIECLVR 132
              ++Q SI+ ++ 
Sbjct: 120 ELEMSQISIQDVID 133


>gi|313900567|ref|ZP_07834060.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
 gi|312954629|gb|EFR36304.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
          Length = 138

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +    +  I +++  +  +  P + S++++   +S+ +L KI++ LVKA IV ++  +
Sbjct: 1   MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLNVSDSYLKKIMRQLVKAKIVSSIASK 59

Query: 61  RGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
            GG  L +   +IT LD+  A E       S  + +     +          +   L  A
Sbjct: 60  NGGFVLLKTPSRITFLDLFNAIEGQEQFAVSTSLVDRVFDSRKQVKEKEE-KIMHYLHGA 118

Query: 115 LNAFFDVLTQYSIECLVRN 133
              +   L + +I+ ++ +
Sbjct: 119 ELEYRKKLKEITIQQILSD 137


>gi|270290220|ref|ZP_06196445.1| transcriptional regulator [Pediococcus acidilactici 7_4]
 gi|270281001|gb|EFA26834.1| transcriptional regulator [Pediococcus acidilactici 7_4]
          Length = 143

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +      + +L Y  +      +    I QI++   I    L +++  L K+  + +
Sbjct: 1   MAYSFGFSQSLEILFYIKLKTEMEEEKYLTIQQISKKTNIPIPSLKRLVGLLKKSDFLAS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TSV 110
            +G  GG+ L + AD+I + DV  A E +  + + + +  +                  +
Sbjct: 61  KKGLNGGLALAKSADRIRLYDVFTAIEGTTPLFKQYDNFDVSAFKHKKEVTYMLIESKKI 120

Query: 111 LRKALNAFFDVLTQYSIECL 130
              A  +  D L + ++  L
Sbjct: 121 FENAEQSMLDELKKKTLADL 140


>gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
           6192]
 gi|306532000|gb|ADN01534.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
           6192]
          Length = 145

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +Y +  L + +          ++A +  + E  L KILQ L +AG++  V+G  GG  L 
Sbjct: 19  EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGVHGGYVLE 77

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
           R   ++TI +V +A +E   +  C    +  C +   C +  
Sbjct: 78  RSLSELTIGEVARALDERV-ILPC---GRDGCEVPEFCVMRP 115


>gi|229043707|ref|ZP_04191411.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
 gi|228725635|gb|EEL76888.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
          Length = 114

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
           +AE+   + + + KI+  L +AG V   RG  GG  L +   +IT+LDV  A    E   
Sbjct: 1   MAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYHAVNVVEEDK 59

Query: 88  VAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
           +         DCP+  +    L  +L +A +A  +VL   ++  L
Sbjct: 60  LFHIHEQPNPDCPIGANIQAVLEIILIQAQSAMEEVLRNITMGQL 104


>gi|291287446|ref|YP_003504262.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884606|gb|ADD68306.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 141

 Score = 81.5 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           DY IR+++Y A       +   I ++  +S   + KI+  L   G + T  G+ GG+ + 
Sbjct: 10  DYAIRIIIYLAT-EGKMVKTKDICKSLYLSRPIVVKIINKLKSCGFLITKTGKEGGLTIA 68

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
                 ++ D+++    +  + +C  +HK  C L+  C +  +  +      + L Q  I
Sbjct: 69  EKIYDASLYDILQCMGFNSRMNQC-TTHKATCKLMPICSVNVLFCEIQQDIENRLKQAKI 127

Query: 128 EC-LVRNRSSIKKIFN 142
           +  L  NR   +K+ N
Sbjct: 128 KEFLFENRD--RKLVN 141


>gi|47092552|ref|ZP_00230341.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|47019144|gb|EAL09888.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
          Length = 210

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L K+ ++ T  
Sbjct: 56  MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 114

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L RP ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 115 GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 171

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ +VR+ S ++
Sbjct: 172 QQKIEFEMEKIKLDSIVRDISVLE 195


>gi|227530014|ref|ZP_03960063.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350046|gb|EEJ40337.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 111

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    I +L +   +    P     IAE+   S + + +++  L  AG+++TV G
Sbjct: 1   MRISTRFSDSIHILAFIETYKGKLPLSSEHIAESIETSPVVVRRLMGKLRSAGLIKTVHG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
                +L R    I++ DV  A E+   +         DC + G+   T
Sbjct: 61  -SADPKLMREPKDISLYDVFLAVEDEQHLFAIDPKTNPDCIVGGNIQTT 108


>gi|167769781|ref|ZP_02441834.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
           17241]
 gi|167668142|gb|EDS12272.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
           17241]
          Length = 121

 Score = 81.5 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
                  +Q+ +   I + F +KI++ L KA  V   RG  GG RL     + T+ D++ 
Sbjct: 3   EGEQVSAAQLCQRELIPQPFAYKIMRKLSKASFVSITRGADGGCRLAVDLREKTLYDLLF 62

Query: 81  ATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           A +   FV  C A     C       G CG+ + L     A    L  +S+  ++  +
Sbjct: 63  AMDSVEFVNACMAPG-YQCLWRERCGGKCGIHAQLESIQQAVDRELQSHSLASILSGK 119


>gi|310644495|ref|YP_003949254.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309249446|gb|ADO59013.1| Transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 165

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+Y   H +       IA +       + ++L  LV+A ++    GR GG  L R 
Sbjct: 18  ALKALVYLEKHGE-LCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127
           AD IT+ D+  A E    +           P  G  +  ++ +L ++     +V   +++
Sbjct: 77  ADHITLADIYHAIEICDPIFPGMMHEPETNPFCGELAIAVSEILAESERRMLEVWESHTL 136

Query: 128 ECLVRN 133
             L + 
Sbjct: 137 ASLAKR 142


>gi|46906690|ref|YP_013079.1| hypothetical protein LMOf2365_0473 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46879955|gb|AAT03256.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 155

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L K+ ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L RP ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 60  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 116

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ +VR+ S ++
Sbjct: 117 QQKIEFEMEKIKLDSIVRDISVLE 140


>gi|304407103|ref|ZP_07388757.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344090|gb|EFM09930.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
           curdlanolyticus YK9]
          Length = 143

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I+ L+  A + ++      IA+        L KIL  L +A ++ET  GR GG RL RP
Sbjct: 18  AIQALVVLASN-EHTCPSCTIADQLQSEATLLRKILATLARASLIETREGRDGGYRLLRP 76

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSI 127
           A+QIT+ +V +A + S  +           P  ++      S++ +   +   VL +++I
Sbjct: 77  AEQITLAEVYQALQISEELGRSMEEATGSHPFGIMMQGVFASLVAELDESTMKVLEKHTI 136

Query: 128 ECLV 131
             L+
Sbjct: 137 AELI 140


>gi|255521304|ref|ZP_05388541.1| hypothetical protein LmonocFSL_08780 [Listeria monocytogenes FSL
           J1-175]
          Length = 167

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L K+ ++ T  
Sbjct: 13  MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 71

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L RP ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 72  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 128

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ +VR+ S ++
Sbjct: 129 QQKIEFEMEKIKLDSIVRDISVLE 152


>gi|199597227|ref|ZP_03210659.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
 gi|258508743|ref|YP_003171494.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|199592031|gb|EDZ00106.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
           rhamnosus HN001]
 gi|257148670|emb|CAR87643.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG]
 gi|259650049|dbj|BAI42211.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 145

 Score = 81.1 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +      + +L Y  +           I  I+E   I    + +++  L   G +E+
Sbjct: 1   MSYSVGFSQSLEILFYIELKTKYEEAKYLTIQAISEKLAIPVPSVKRLVALLKNKGFIES 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTS--V 110
            +G  GG+ L  PA  I   DV +A E    + + +     +            L S  +
Sbjct: 61  KKGVNGGLALAMPAKSIRFYDVFEAIEGDVKLFKQYDDFDTNTFIHRQEAEYMLLKSKEI 120

Query: 111 LRKALNAFFDVLTQYSIECL 130
              A ++    L + ++  L
Sbjct: 121 FDMAQSSMLKELKRRTLSEL 140


>gi|16799534|ref|NP_469802.1| hypothetical protein lin0458 [Listeria innocua Clip11262]
 gi|16412899|emb|CAC95690.1| lin0458 [Listeria innocua Clip11262]
          Length = 155

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 60  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + Q  ++ +V + S ++
Sbjct: 117 QQKIELEMDQIKLDSIVHDISVLE 140


>gi|167569489|ref|ZP_02362363.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
          Length = 152

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + +  L   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R    IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPSSITLLDVYRAVDDAQLFALHRETPNPACLVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|116493495|ref|YP_805230.1| BadM/Rrf2 family transcriptional regulator [Pediococcus pentosaceus
           ATCC 25745]
 gi|116103645|gb|ABJ68788.1| transcriptional regulator, BadM/Rrf2 family [Pediococcus
           pentosaceus ATCC 25745]
          Length = 142

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ D       IA++   +   +  ++  L  AG++ T  G 
Sbjct: 1   MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA----LN 116
                L     +I+ILDV KA      +          C + GS  +  VL  A      
Sbjct: 60  SASPALNARPSEISILDVYKAVNMDHNLLHIDPKTNPQCVVGGS--IQDVLDDAYAEIQQ 117

Query: 117 AFFDVLTQYSIECLVR 132
           + F  + + +I  +  
Sbjct: 118 SAFQKMDEITIADITE 133


>gi|254252764|ref|ZP_04946082.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158]
 gi|124895373|gb|EAY69253.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158]
          Length = 151

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMEEGVPLSSDVIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPHEITLLDVYRAVDDAQLFALHREAPNPACVVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|226223067|ref|YP_002757174.1| hypothetical protein Lm4b_00463 [Listeria monocytogenes Clip81459]
 gi|225875529|emb|CAS04232.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467735|gb|EGF38787.1| hypothetical protein LM1816_01772 [Listeria monocytogenes 1816]
 gi|328475916|gb|EGF46640.1| hypothetical protein LM220_06157 [Listeria monocytogenes 220]
 gi|332310865|gb|EGJ23960.1| Transcription regulator [Listeria monocytogenes str. Scott A]
          Length = 161

 Score = 81.1 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + KI+  L K+ ++ T  
Sbjct: 7   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQT 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L RP ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 66  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLASKYDLL 122

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ +VR+ S ++
Sbjct: 123 QQKIEFEMEKIKLDSIVRDISVLE 146


>gi|262199394|ref|YP_003270603.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Haliangium ochraceum DSM 14365]
 gi|262082741|gb|ACY18710.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
           DSM 14365]
          Length = 165

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   + P+    +A+    + + L +I+  L   G V++ +G  GG  L    
Sbjct: 11  LHVLLHLA-QREGPSTSETLAKVMDTNPVVLRRIMAGLRDRGYVQSSKGHGGGWTLSCDI 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             IT+ DV  A      ++    S   DC +  +    L  V  +            ++ 
Sbjct: 70  AAITLGDVYDALGRPPLLSLRHRSEHPDCVVEAAVNDALGDVFDEVEALLLARFEDITLS 129

Query: 129 CL 130
            L
Sbjct: 130 AL 131


>gi|160899973|ref|YP_001565555.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
           SPH-1]
 gi|160365557|gb|ABX37170.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
           SPH-1]
          Length = 161

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++ +D  + VL++ A   D P     +A A   + + L +++  L  AG+V + +G  GG
Sbjct: 5   SQFSDV-LHVLLHMA-EGDGPATSDMLAAALQTNPVVLRRLMSGLRDAGLVTSAKGHGGG 62

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
             L    D+ T+ DV +A      VA  F   + +C +  +    L+  +++A  A    
Sbjct: 63  WVLSCELDRTTLRDVHEALGAPGLVALGFREDRPECLVAQAVNEALSDAVQQAEAALLAR 122

Query: 122 LTQYSIECLVRN 133
           L   ++  L  +
Sbjct: 123 LGTVTLAALSHD 134


>gi|167562245|ref|ZP_02355161.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
          Length = 152

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + +  L   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R    IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPSSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|258611576|ref|ZP_05233618.2| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258601342|gb|EEW14667.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 182

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 28  MKYSIQFSD-AIHILTYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 86

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 87  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 143

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 144 QQKIELEMDEIKLDSIIHDISVLE 167


>gi|306832073|ref|ZP_07465227.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425512|gb|EFM28630.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 146

 Score = 80.8 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  + R    + +L   AIH   N      + +A +   + + +  +L  L KAG+V+  
Sbjct: 1   MSYSTRLATSVHIL--LAIHHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAGLVKVE 58

Query: 58  RGRRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSV----LR 112
            G  GG  L +  + +T+ D+  A E+S   + +       +C +     + SV    L 
Sbjct: 59  AGI-GGAHLTKQPEDLTLWDIFLAVEDSNKTIFKPHDDTNPNCEVGRV--VHSVLDPRLN 115

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +  N F   L   S+  L+ +
Sbjct: 116 EIHNQFLQSLKTISLASLITD 136


>gi|255029797|ref|ZP_05301748.1| hypothetical protein LmonL_13364 [Listeria monocytogenes LO28]
 gi|332312785|gb|EGJ25880.1| Rrf2 family protein [Listeria monocytogenes str. Scott A]
          Length = 143

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 22  DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D P     I       S  ++ KIL+ LV +G++ +V G  GG  L +  ++I +LD+V+
Sbjct: 10  DVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVE 69

Query: 81  ATEESF------FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           A E          +     S   +    G   +TS  R A   + + L    +  LV  
Sbjct: 70  AVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFRNADKEYANYLYSQKLSVLVEQ 128


>gi|330990699|ref|ZP_08314655.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
 gi|329762139|gb|EGG78627.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
           SXCC-1]
          Length = 79

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKAL 115
            RGR GGV L RP   I +  VV+  E    V + C       C L  +C L  + R+A 
Sbjct: 3   TRGRNGGVSLARPPKDINVGHVVRLMETEGEVIKGCAPLQGRPCVLADACRLRHLARQAT 62

Query: 116 NAFFDVLTQYSIECLV 131
           +AF  VL   S+  L+
Sbjct: 63  DAFMAVLDGMSVHDLL 78


>gi|126456922|ref|YP_001075296.1| transcriptional regulator [Burkholderia pseudomallei 1106a]
 gi|167827792|ref|ZP_02459263.1| transcriptional regulator [Burkholderia pseudomallei 9]
 gi|217419315|ref|ZP_03450822.1| transcriptional regulator [Burkholderia pseudomallei 576]
 gi|242311392|ref|ZP_04810409.1| transcriptional regulator [Burkholderia pseudomallei 1106b]
 gi|254190011|ref|ZP_04896520.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237]
 gi|126230690|gb|ABN94103.1| transcriptional regulator [Burkholderia pseudomallei 1106a]
 gi|157937688|gb|EDO93358.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237]
 gi|217398619|gb|EEC38634.1| transcriptional regulator [Burkholderia pseudomallei 576]
 gi|242134631|gb|EES21034.1| transcriptional regulator [Burkholderia pseudomallei 1106b]
          Length = 153

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 AHFGAITVGDLARD 134


>gi|239926607|ref|ZP_04683560.1| hypothetical protein SghaA1_00120 [Streptomyces ghanaensis ATCC
           14672]
 gi|291434916|ref|ZP_06574306.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291337811|gb|EFE64767.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 144

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGAGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
            R    +T+LDV +A E     A    +    C +       +  +           L +
Sbjct: 70  ARELGTMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGHGIQPAMQGIYEGIEETLRHELAR 129

Query: 125 YSIECLVRN 133
            ++E ++R+
Sbjct: 130 VTLENVLRD 138


>gi|223985227|ref|ZP_03635311.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
           12042]
 gi|223962805|gb|EEF67233.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
           12042]
          Length = 156

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      I   +Y A H + P    ++A   C   + + KI+  L +AGI  +  G  G
Sbjct: 1   MTSELTVAIHAAVYLA-HKNAPQSSDELAVNICTHPVRVRKIMAALCRAGIAVSQEGSEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
           G RLCR    IT+  + +A   +  + E             SC + S + + ++  +   
Sbjct: 60  GYRLCRSPQAITLRQIAEAL--NVALVESKWQSGDP---EMSCLVASGMAREMDKIYRSL 114

Query: 120 -----DVLTQYSIECLVRN 133
                + L + ++  L+++
Sbjct: 115 NEQCLESLDRLTLWDLLQD 133


>gi|120435758|ref|YP_861444.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
 gi|117577908|emb|CAL66377.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
           KT0803]
          Length = 142

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 3   LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +K  +YGIR  +Y A    N   + + +IA A    E F  KI+Q L K  IV + +G 
Sbjct: 2   FSKACEYGIRATLYIAHQSQNGMRSNLGEIARAVNSPEAFTAKIMQKLSKNEIVASRKGP 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS---VLRKALNA 117
            GG  +  P+ +  ++ +V+A +       C      +C     C L      +R  L  
Sbjct: 62  SGGFFI-DPSSKTKLIAIVQAIDGDLIYNGC-GLGLQECSESLPCPLHDQFIAIRGDLKK 119

Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
             +     S+   + +  +  K+
Sbjct: 120 MLEHTEIMSLAGKLESNKTFLKL 142


>gi|206559473|ref|YP_002230234.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
 gi|198035511|emb|CAR51390.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
          Length = 151

 Score = 80.8 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQSALTGYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L   ++  +  +   +++
Sbjct: 121 EASLATRTLADVTADMLDLEQ 141


>gi|121996942|ref|YP_001001729.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588347|gb|ABM60927.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
           halophila SL1]
          Length = 176

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 2   HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            +T R  Y +  +++ A+H++  P  +++I+    IS  ++ +I   L    I+E + G 
Sbjct: 12  QVTARGRYAVGAVLHIALHDEIGPVPLAEISVCQNISTSYVDQIFADLRPHRIIEGIPGP 71

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL RPA ++T+ +++ A E                 L G+     V  + +     
Sbjct: 72  GGGYRLARPASEVTVAEIIAAVERREA------GTTYRSALEGA-----VWSRLMADIAH 120

Query: 121 VLTQYSIECLVRNRSSIKKI 140
            + + ++  LV   ++ + +
Sbjct: 121 FMERLTVADLVERPAAREWL 140


>gi|300775786|ref|ZP_07085647.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
 gi|300505813|gb|EFK36950.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
           35910]
          Length = 136

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + ++   A           +A +  ++ + + K +  L +AG++ + +G+ GG +L + 
Sbjct: 9   AVHIMTLLAKSPQEWLTSDWMAGSINVNPVIVRKEISVLREAGLIISRQGKEGGSQLAKN 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127
           AD ITI ++ KA + +  + +   +    C +     +   ++  +  +   + L   S+
Sbjct: 69  ADMITISEIYKAVKNTEVLGKKNQNPNPACSVGKEINIHLNTLFEETDHLVINFLGDKSL 128

Query: 128 ECLVRN 133
           +     
Sbjct: 129 QEFTDQ 134


>gi|117920979|ref|YP_870171.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613311|gb|ABK48765.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
          Length = 137

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++            ++AE    + + + + +  L   G V + +G  GG  L +P 
Sbjct: 11  LHILVHLDAFATQ-LTSEKMAEMIGTNPVVVRRTMALLRDQGYVTSSKGHAGGWALAKPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIE 128
            +IT+L++ +A  +S F          +CP+    +  L  V+++A +       + +++
Sbjct: 70  AKITLLEIHQALGDSAFFTIGLTDEHNNCPIEIAVNDALKDVMQEAESLLLQRFGEITLD 129

Query: 129 CLV 131
            L 
Sbjct: 130 KLA 132


>gi|222084619|ref|YP_002543148.1| hypothetical protein Arad_0566 [Agrobacterium radiobacter K84]
 gi|221722067|gb|ACM25223.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 152

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA     + + + + +  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRH-EGAATSETIAAMLGTNAVVVRRTMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L +P  +IT+LD+  A       +   A    +C +  +    L   + +      
Sbjct: 61  GGWVLAQPLREITLLDIHNALGAPQLFSIGLAGDNPNCVIEQAVNASLAEAMSEGEAILL 120

Query: 120 DVLTQYSIECLVRNRSS 136
               + ++  L    S 
Sbjct: 121 AKFAKVTLAALAEQSSE 137


>gi|307313736|ref|ZP_07593354.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|306899226|gb|EFN29863.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 135

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  +          IA+    + + + + +  L + GIV +  GR GG R+ + A
Sbjct: 10  LHVLVHMHLLGGGE-TSETIAKMLNTNPVVVRRTMAALKEKGIVTSAGGRSGGWRIAKGA 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128
           D+IT+  V  A +     +   +     CP+ G+    L   +  A  A        +I+
Sbjct: 69  DEITVEQVHDALQTGSAFSIALSRDHSTCPVEGAVNTFLDQAMADAERALRTRFAGTTIQ 128

Query: 129 CLVR 132
            L  
Sbjct: 129 DLAN 132


>gi|53721942|ref|YP_110927.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|167742245|ref|ZP_02415019.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167819422|ref|ZP_02451102.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|254192911|ref|ZP_04899346.1| transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254264345|ref|ZP_04955210.1| transcriptional regulator [Burkholderia pseudomallei 1710a]
 gi|254300275|ref|ZP_04967721.1| transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|52212356|emb|CAH38380.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|157810436|gb|EDO87606.1| transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|169649665|gb|EDS82358.1| transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254215347|gb|EET04732.1| transcriptional regulator [Burkholderia pseudomallei 1710a]
          Length = 153

 Score = 80.4 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +   L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|161525268|ref|YP_001580280.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189349994|ref|YP_001945622.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221201430|ref|ZP_03574469.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD2M]
 gi|221208015|ref|ZP_03581021.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD2]
 gi|160342697|gb|ABX15783.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans ATCC 17616]
 gi|189334016|dbj|BAG43086.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221172200|gb|EEE04641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD2]
 gi|221178698|gb|EEE11106.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD2M]
          Length = 151

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120

Query: 119 FDVLTQYSIECL 130
              L   ++  +
Sbjct: 121 EASLASRTLADV 132


>gi|188990044|ref|YP_001902054.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731804|emb|CAP49988.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
           campestris pv. campestris]
          Length = 181

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A  +  P    QIA     + + + + +  L +AG V++ +G  
Sbjct: 30  RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 84

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFF 119
           GG +L R   Q+T+LDV +A       A         C    V +  +   L  A     
Sbjct: 85  GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 144

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L   ++  L  +  ++ K
Sbjct: 145 ERLGTVTLADLASDFDALCK 164


>gi|330816101|ref|YP_004359806.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
 gi|327368494|gb|AEA59850.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           gladioli BSR3]
          Length = 146

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   A     P     IA +   +   + ++   L  AGI  +  G 
Sbjct: 1   MNTSSRFAFAVHVLTLLAQQEGVPLSSEYIAGSVNTNPALIRRLTSMLAAAGITTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R    IT+L+V +A ++    A    +   DC +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGSITLLEVYRAVDDGQLFALHREAPNPDCLVGRHIQGVLTVYIDDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L + ++  ++ +
Sbjct: 121 EASLARRTVADVMAD 135


>gi|194367667|ref|YP_002030277.1| BadM/Rrf2 family transcriptional regulator [Stenotrophomonas
           maltophilia R551-3]
 gi|194350471|gb|ACF53594.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas
           maltophilia R551-3]
          Length = 151

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + V+ +   H   P    Q+A       + + ++L  L +AG+V + RG  GG  L R 
Sbjct: 10  ALHVMAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHRAGLVRSTRGHGGGSVLARD 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125
           A  IT+ D+  A      V          CP+     + S L    R+A       L   
Sbjct: 69  AAAITLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAT 126

Query: 126 SIECL 130
           +++ L
Sbjct: 127 TLDQL 131


>gi|258612305|ref|ZP_05269685.2| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293596711|ref|ZP_05263693.2| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|258610600|gb|EEW23208.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591694|gb|EFG00029.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 182

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 28  MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 86

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 87  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 143

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 144 QQKIELEMDEIKLDSIIHDISVLE 167


>gi|83719348|ref|YP_443374.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|167582421|ref|ZP_02375295.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
 gi|167620514|ref|ZP_02389145.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
 gi|257139623|ref|ZP_05587885.1| Rrf2 family protein [Burkholderia thailandensis E264]
 gi|83653173|gb|ABC37236.1| Rrf2 family protein [Burkholderia thailandensis E264]
          Length = 154

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|21232974|ref|NP_638891.1| hypothetical protein XCC3545 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766953|ref|YP_241715.1| hypothetical protein XC_0614 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114816|gb|AAM42815.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572285|gb|AAY47695.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 157

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A  +  P    QIA     + + + + +  L +AG V++ +G  
Sbjct: 6   RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFF 119
           GG +L R   Q+T+LDV +A       A         C    V +  +   L  A     
Sbjct: 61  GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 120

Query: 120 DVLTQYSIECLVRNRSSIKK 139
           + L   ++  L  +  ++ K
Sbjct: 121 ERLGTVTLADLASDFDALCK 140


>gi|213693040|ref|YP_002323626.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524501|gb|ACJ53248.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320459218|dbj|BAJ69839.1| putative transcriptional regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 141

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H         +AE  C +   + K+++PL  AG++ T  G  GG  L RP
Sbjct: 8   AVHALVYL-DHRATHLPSHILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A +IT+  V +AT  +F       ++     +   C ++S +   ++  +  L +  +E 
Sbjct: 67  AAEITLRAVAEATGTTF-----VEANWTPGDVQEDCLVSSSMGAVMDDIYAGLNRTCLEQ 121

Query: 130 L 130
           L
Sbjct: 122 L 122


>gi|15964112|ref|NP_384465.1| hypothetical protein SMc01160 [Sinorhizobium meliloti 1021]
 gi|307301257|ref|ZP_07581019.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
 gi|307317928|ref|ZP_07597365.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|15073288|emb|CAC41796.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306896330|gb|EFN27079.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           AK83]
 gi|306903713|gb|EFN34300.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
           BL225C]
          Length = 152

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A          ++A     + + + + +  L +AG+V + RG  GG  L R  
Sbjct: 11  LHALLHMAER--ETITSEELAACLSTNPVVVRRTMAGLREAGLVRSERGHGGGWSLVRDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             I++ DV  A  E    A    +    C +  +    +   LR A       L + S+ 
Sbjct: 69  ATISLADVHAALGEPAVFAIGNRTEAPGCVVEQAVNAAMDGALRDAEALLMQRLERISLA 128

Query: 129 CLVRN 133
            L  +
Sbjct: 129 DLSND 133


>gi|170747484|ref|YP_001753744.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654006|gb|ACB23061.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 155

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A H D P     I      + + + + +  L  AG V++ +G  
Sbjct: 10  RLSRT----LHVLLHMARH-DGPMTSEAIGRMLGTNPVVVRRTMAGLRNAGYVKSEKGHG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
           GG  +      +++LDV +A       A         C +       +   LR+A     
Sbjct: 65  GGWTIAADLSAVSLLDVHRAVGGPRIFAIGSDRANPACAVEKVVNEAVEETLREAEALLI 124

Query: 120 DVLTQYSIECLVRN 133
             L   S+  L R+
Sbjct: 125 ARLGSVSLAELARS 138


>gi|321313211|ref|YP_004205498.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5]
 gi|320019485|gb|ADV94471.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5]
          Length = 133

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   ++  D       IA++   + + + +++  L KA ++ +  G  G
Sbjct: 2   INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADLLTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +    I++L+V +A ++   +     +    CP+     + + L +       A 
Sbjct: 60  -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 116

Query: 119 FDVLTQYSIECLVRN 133
            + L   S++ ++ +
Sbjct: 117 ENELASKSLKDVMNH 131


>gi|221214010|ref|ZP_03586983.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD1]
 gi|221166187|gb|EED98660.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           multivorans CGD1]
          Length = 151

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120

Query: 119 FDVLTQYSIECL 130
              L   ++  +
Sbjct: 121 EASLASRTLADV 132


>gi|81428601|ref|YP_395601.1| hypothetical protein LSA0990 [Lactobacillus sakei subsp. sakei 23K]
 gi|78610243|emb|CAI55292.1| Hypothetical protein LCA_0990 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 144

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ D       IA +   +   + +++  LVKA ++E+  G 
Sbjct: 1   MKYSHKLSDAIHILAYVEIYQDGDLSSQSIAGSIESNASLVRRLMSLLVKADLLESRPGT 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
               +L RPA+QI++LDV +A +    +          C +  +    L     +   A 
Sbjct: 61  IA-PKLARPAEQISVLDVYQALDTDQQLLHIDEKTNPQCLVGANIQSALNDAYDQVQKAA 119

Query: 119 FDVLTQYSIECLVRN 133
            D + Q  +  ++ +
Sbjct: 120 EDQMAQIKLAGIIAD 134


>gi|313620490|gb|EFR91857.1| transcription regulator [Listeria innocua FSL S4-378]
          Length = 155

 Score = 80.4 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 60  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 117 QQKIELEMDEIKLDSIIHDISVLE 140


>gi|16080716|ref|NP_391544.1| hypothetical protein BSU36630 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311621|ref|ZP_03593468.1| hypothetical protein Bsubs1_19801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315948|ref|ZP_03597753.1| hypothetical protein BsubsN3_19717 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320860|ref|ZP_03602154.1| hypothetical protein BsubsJ_19665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325145|ref|ZP_03606439.1| hypothetical protein BsubsS_19831 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81345681|sp|P71036|YWNA_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywnA
 gi|1592697|emb|CAA69860.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636188|emb|CAB15680.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291486238|dbj|BAI87313.1| hypothetical protein BSNT_05590 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 133

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   ++  D       IA++   + + + +++  L KA I+ +  G  G
Sbjct: 2   INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +    I++L+V +A ++   +     +    CP+     + + L +       A 
Sbjct: 60  -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 116

Query: 119 FDVLTQYSIECLVRN 133
            + L   S++ ++ +
Sbjct: 117 ENELASKSLKDVMNH 131


>gi|76819017|ref|YP_337666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|76583490|gb|ABA52964.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
          Length = 571

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 424 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 478

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +   L +A     
Sbjct: 479 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 538

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 539 ARFGAITVGDLARD 552


>gi|296454824|ref|YP_003661968.1| BadM/Rrf2 family transcriptional regulator [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184256|gb|ADH01138.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 140

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H+        +AE  C +   + K+++PL  AG++ T  G  GG  L RP
Sbjct: 8   AVHALVYL-DHHATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A +IT+  V +AT  +F              +   C ++S +   +N  +  L +  +E 
Sbjct: 67  AAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMNDIYAGLNRTCLEQ 121

Query: 130 L 130
           L
Sbjct: 122 L 122


>gi|53718907|ref|YP_107893.1| hypothetical protein BPSL1272 [Burkholderia pseudomallei K96243]
 gi|53724208|ref|YP_103396.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76811767|ref|YP_332909.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|121601481|ref|YP_992509.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|126442156|ref|YP_001058415.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126448208|ref|YP_001080027.1| Rrf2 family protein [Burkholderia mallei NCTC 10247]
 gi|126452517|ref|YP_001065649.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|134283856|ref|ZP_01770553.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|167003976|ref|ZP_02269754.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|167737931|ref|ZP_02410705.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167815112|ref|ZP_02446792.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167823530|ref|ZP_02455001.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
 gi|167893621|ref|ZP_02481023.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167902069|ref|ZP_02489274.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167910306|ref|ZP_02497397.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167918337|ref|ZP_02505428.1| putative transcriptional regulator [Burkholderia pseudomallei
           BCC215]
 gi|217423763|ref|ZP_03455264.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|226198599|ref|ZP_03794165.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811658|ref|YP_002896109.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346]
 gi|238563952|ref|ZP_00437973.2| Rrf2 family protein [Burkholderia mallei GB8 horse 4]
 gi|242316881|ref|ZP_04815897.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|254177742|ref|ZP_04884397.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|254180297|ref|ZP_04886896.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|254188276|ref|ZP_04894787.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198415|ref|ZP_04904837.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|254209429|ref|ZP_04915775.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|254260515|ref|ZP_04951569.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
 gi|254358932|ref|ZP_04975205.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|52209321|emb|CAH35266.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52427631|gb|AAU48224.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
 gi|76581220|gb|ABA50695.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
 gi|121230291|gb|ABM52809.1| Rrf2 family protein [Burkholderia mallei SAVP1]
 gi|126221649|gb|ABN85155.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
 gi|126226159|gb|ABN89699.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|126241078|gb|ABO04171.1| Rrf2 family protein [Burkholderia mallei NCTC 10247]
 gi|134244844|gb|EBA44941.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
 gi|147750202|gb|EDK57273.1| putative transcriptional regulator [Burkholderia mallei JHU]
 gi|148028059|gb|EDK86080.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
 gi|157935955|gb|EDO91625.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698781|gb|EDP88751.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
 gi|169655156|gb|EDS87849.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
 gi|184210837|gb|EDU07880.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
 gi|217393621|gb|EEC33642.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
 gi|225929342|gb|EEH25363.1| putative transcriptional regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506811|gb|ACQ99129.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346]
 gi|238519606|gb|EEP83077.1| Rrf2 family protein [Burkholderia mallei GB8 horse 4]
 gi|242140120|gb|EES26522.1| putative transcriptional regulator [Burkholderia pseudomallei
           1106b]
 gi|243060594|gb|EES42780.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
 gi|254219204|gb|EET08588.1| putative transcriptional regulator [Burkholderia pseudomallei
           1710a]
          Length = 153

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|313115924|ref|ZP_07801351.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621688|gb|EFQ05216.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 146

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK TDY +R+L      +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 4   MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALNA 117
            GG  L    D  ++ D++    E   +  C      +C      G C +   L      
Sbjct: 62  LGGCELSCDLDATSLYDLMVVVGERGILCACMEPG-YECRWHDKHGRCAIHCQLAALQQK 120

Query: 118 FFDVLTQYSIECLV 131
             +     S+  L+
Sbjct: 121 QDEAFRAVSLRRLL 134


>gi|47096459|ref|ZP_00234052.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47015180|gb|EAL06120.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 155

 Score = 80.0 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 60  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 117 QQKIELEMDEIKLDSIIHDISVLE 140


>gi|126731918|ref|ZP_01747722.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
 gi|126707745|gb|EBA06807.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
          Length = 115

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
           D P    +IA     +   + + L  L +AG++ + +G  GG  L RP  +I++LD+  A
Sbjct: 2   DRPATSEEIAAMLGTNATVVRRTLAGLREAGLLSSTKGHGGGWSLSRPLTEISLLDLYSA 61

Query: 82  TEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
                  A      +  C      +      L  A   F + L   ++  +VR
Sbjct: 62  LGSPELFAIAPDEAQPACLLARAANAATNDALHAAREVFEERLKALTVAEIVR 114


>gi|55670826|pdb|1XD7|A Chain A, Crsytal Structure Of A Putative Dna Binding Protein
          Length = 145

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  R    I +L   ++  D       IA++   + + + +++  L KA I+ +  G  G
Sbjct: 4   INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAF 118
              L +    I++L+V +A ++   +     +    CP+     + + L +       A 
Sbjct: 62  -ASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGK--KIQNALDETFESVQRAM 118

Query: 119 FDVLTQYSIECLVRN 133
            + L   S++ ++ +
Sbjct: 119 ENELASKSLKDVMNH 133


>gi|322436026|ref|YP_004218238.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
 gi|321163753|gb|ADW69458.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
           MP5ACTX9]
          Length = 124

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +RVL   A   D  +  + IAEA   S + + +I   L KAG +E  +G 
Sbjct: 1   MAQSGRFGLSVRVLGVLAAEPDAMHTSAAIAEAIGSSPVMVRRIFSALHKAGFIEQKKGP 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GG RL   A  I + D+  A E              D  + G   L + ++K   A  +
Sbjct: 61  AGGARLKHSAKSIGLGDLFVAIE-------------PDWLMSGEKALDAAMKKVRTAAVE 107

Query: 121 VLTQYSIE 128
            + + SI 
Sbjct: 108 AMNETSIA 115


>gi|239833885|ref|ZP_04682213.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239821948|gb|EEQ93517.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 167

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A H   P     +A+A   + + + +++  L + G V + +G  GG  +    
Sbjct: 24  LHVLLHMAEHRG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 82

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           +++T+ D+ +A  E   +A    + K +C +  +    L      A N   +   + ++ 
Sbjct: 83  NKVTLRDIYEAIGEPTLLAMGNRAEKPECLVEQAVNASLGKAFSDAENLLLERFGEVTLA 142

Query: 129 CLVRN 133
            L  +
Sbjct: 143 MLSAD 147


>gi|23466176|ref|NP_696779.1| hypothetical protein BL1627 [Bifidobacterium longum NCC2705]
 gi|227546522|ref|ZP_03976571.1| possible transcriptional regulator [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621519|ref|ZP_04664550.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312133920|ref|YP_004001259.1| transcriptional regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|317482172|ref|ZP_07941195.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689884|ref|YP_004209618.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691825|ref|YP_004221395.1| transcriptional regulator [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23326915|gb|AAN25415.1| hypothetical protein in upf0074 [Bifidobacterium longum NCC2705]
 gi|227213071|gb|EEI80950.1| possible transcriptional regulator [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515394|gb|EEQ55261.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516431|emb|CBK70047.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
           subsp. longum F8]
 gi|311773214|gb|ADQ02702.1| Putative transcriptional regulator [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|316916406|gb|EFV37805.1| transcriptional regulator [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456681|dbj|BAJ67303.1| putative transcriptional regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461220|dbj|BAJ71840.1| putative transcriptional regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 140

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H         +AE  C +   + K+++PL  AG++ T  G  GG  L RP
Sbjct: 8   AVHALVYL-DHRATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           A +IT+  V +AT  +F              +   C ++S +   +N  +  L +  +E 
Sbjct: 67  AAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMNDIYAGLNRTCLEQ 121

Query: 130 L 130
           L
Sbjct: 122 L 122


>gi|16802480|ref|NP_463965.1| hypothetical protein lmo0436 [Listeria monocytogenes EGD-e]
 gi|224502271|ref|ZP_03670578.1| hypothetical protein LmonFR_07074 [Listeria monocytogenes FSL
           R2-561]
 gi|254900618|ref|ZP_05260542.1| hypothetical protein LmonJ_12419 [Listeria monocytogenes J0161]
 gi|255016974|ref|ZP_05289100.1| hypothetical protein LmonF_02523 [Listeria monocytogenes FSL
           F2-515]
 gi|255029584|ref|ZP_05301535.1| hypothetical protein LmonL_11760 [Listeria monocytogenes LO28]
 gi|16409813|emb|CAC98515.1| lmo0436 [Listeria monocytogenes EGD-e]
          Length = 161

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 7   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQT 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 66  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 122

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 123 QQKIELEMDEIKLDSIIHDISVLE 146


>gi|317406169|gb|EFV86423.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 148

 Score = 80.0 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A   D P     I +    + + + +++  L + G V++ +G  
Sbjct: 6   RLSRM----LHVLLHMAEQ-DAPLTSETIGKMLNTNPVVVRRMMSGLRERGYVQSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L RP  ++T+LDV +A  E    A      +  C +  +   GL   + ++     
Sbjct: 61  GGWVLTRPLAELTLLDVYQALGEPPIFALGLDQSEPKCLVEQAVNAGLEGAMAESRRLLL 120

Query: 120 DVLTQYSIECLVRNRSSIKKI 140
           +      ++ L R+     K+
Sbjct: 121 ERFATIRMDQLARDFQERLKL 141


>gi|53717100|ref|YP_105929.1| hypothetical protein BMAA1311 [Burkholderia mallei ATCC 23344]
 gi|124381671|ref|YP_001024383.1| transcriptional regulator [Burkholderia mallei NCTC 10229]
 gi|126447815|ref|YP_001078192.1| transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|254174401|ref|ZP_04881063.1| transcriptional regulator [Burkholderia mallei ATCC 10399]
 gi|254356988|ref|ZP_04973263.1| transcriptional regulator [Burkholderia mallei 2002721280]
 gi|52423070|gb|AAU46640.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|124289691|gb|ABM98960.1| transcriptional regulator [Burkholderia mallei NCTC 10229]
 gi|126240669|gb|ABO03781.1| transcriptional regulator [Burkholderia mallei NCTC 10247]
 gi|148026015|gb|EDK84138.1| transcriptional regulator [Burkholderia mallei 2002721280]
 gi|160695447|gb|EDP85417.1| transcriptional regulator [Burkholderia mallei ATCC 10399]
          Length = 153

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|318041251|ref|ZP_07973207.1| transcriptional regulator, BadM/Rrf2 family protein [Synechococcus
           sp. CB0101]
          Length = 148

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +     ++ L+  A        ++ IA A  +    L ++L  L +AG+VE  RGR GG 
Sbjct: 6   RSGQQALQALLELAEAPQQWRSVNDIAAAQALPAPMLEQLLLQLRRAGLVEARRGRLGGY 65

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           RL R    I + +V+ A      + E  A             L S+ R+   A    L Q
Sbjct: 66  RLQRQPAAIPVAEVLAAVGADIQLVEPDAPDSNQAEEQ---VLRSMARRLQRAMERELMQ 122

Query: 125 YSIECLVRNRSSIKKIFNA 143
           +++E L+ +  S ++  + 
Sbjct: 123 FNLEELLFDLRSCRETLSG 141


>gi|325979000|ref|YP_004288716.1| BadM/Rrf2 family transcriptional regulator [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178928|emb|CBZ48972.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 146

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    + +L+      N      + +A +   + + +  +L  L KA +V+   G
Sbjct: 1   MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116
             GG  L +   ++T+ D+ +A E+ +  + +       +CP+    +  L   + +   
Sbjct: 61  V-GGAHLTKAPQELTLWDIFQAVEDTNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEIQE 119

Query: 117 AFFDVLTQYSIECLVRN 133
            F   L   ++  L+ +
Sbjct: 120 NFKASLENITLASLITD 136


>gi|167723275|ref|ZP_02406511.1| transcriptional regulator [Burkholderia pseudomallei DM98]
 gi|167849266|ref|ZP_02474774.1| transcriptional regulator [Burkholderia pseudomallei B7210]
 gi|167897870|ref|ZP_02485272.1| transcriptional regulator [Burkholderia pseudomallei 7894]
 gi|167914532|ref|ZP_02501623.1| transcriptional regulator [Burkholderia pseudomallei 112]
 gi|167922427|ref|ZP_02509518.1| transcriptional regulator [Burkholderia pseudomallei BCC215]
 gi|237508735|ref|ZP_04521450.1| transcriptional regulator [Burkholderia pseudomallei MSHR346]
 gi|235000940|gb|EEP50364.1| transcriptional regulator [Burkholderia pseudomallei MSHR346]
          Length = 153

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|90961949|ref|YP_535865.1| transcription regulator [Lactobacillus salivarius UCC118]
 gi|90821143|gb|ABD99782.1| Transcription regulator [Lactobacillus salivarius UCC118]
          Length = 153

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ +     ++IA +   +   +  ++  L KAG++    G 
Sbjct: 1   MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PA +I++LDV +A   +  +         +C +  +    L  V ++  +A 
Sbjct: 61  A-RASLAKPASEISVLDVYRAITPTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQDAA 119

Query: 119 FDVLTQYSIECLVR 132
              ++Q SI+ ++ 
Sbjct: 120 ELEMSQISIQDVID 133


>gi|308071262|ref|YP_003872867.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860541|gb|ADM72329.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 157

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+Y   H +       IA +       + ++L  LV+A ++    GR GG  L R 
Sbjct: 18  AVKALVYLEKHGE-LCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76

Query: 70  ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           AD IT+ D+  A E  +  F                +  ++ +L ++     +V   +++
Sbjct: 77  ADHITLADIYHAIEICDPIFPGMMHEPETNPFCEELAIAVSEILAESERRMLEVWGSHTL 136

Query: 128 ECLVRNRSSI 137
             L  NR+S+
Sbjct: 137 ASLA-NRTSL 145


>gi|325105184|ref|YP_004274838.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
 gi|324974032|gb|ADY53016.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
           12145]
          Length = 136

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           IA +  I+ + + K +  L KAG+V++  G+ GG  L + AD I + D+ KA       A
Sbjct: 29  IAGSININSVLVRKEITELRKAGLVDSKEGKNGGFFLAKKADDINLGDLFKAVYPESIFA 88

Query: 90  ECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
               S   +CP+       L S+  +A  +    L ++S+    + 
Sbjct: 89  FAKNSPNPNCPIGKDINKHLESLYVEAELSLVQELKRHSLAEFCQK 134


>gi|167906209|ref|ZP_02493414.1| transcriptional regulator [Burkholderia pseudomallei NCTC 13177]
          Length = 153

 Score = 79.6 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|290892404|ref|ZP_06555398.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557970|gb|EFD91490.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 182

 Score = 79.2 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L K+ ++ T  
Sbjct: 28  MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 86

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G+     L RP ++I++LDV K+ E +  +         DC +  +    LTS       
Sbjct: 87  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 145

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
                + +  ++ +VR+ S ++
Sbjct: 146 KMELEMEKIKLDSIVRDISVLE 167


>gi|162147274|ref|YP_001601735.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544320|ref|YP_002276549.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785851|emb|CAP55422.1| putative transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531997|gb|ACI51934.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 149

 Score = 79.2 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 10  GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            + +++  A H         + IAE   ++   +  +LQ L ++ ++E+VRG RGG RL 
Sbjct: 11  AVLIMLDVAFHAGRSGTVSAADIAERAGLARRGIEPLLQTLSRSSLLESVRGPRGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   IT+ D+V+        ++      +   ++  C      +K  +       + ++
Sbjct: 71  RPRRDITLADIVEIATADDSSSDDGPVGALFTKVIEPC-----WQKLDDTLSTQCRKLTL 125

Query: 128 ECLVRNRSS 136
           + LVR   S
Sbjct: 126 DDLVRRAES 134


>gi|226226357|ref|YP_002760463.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226089548|dbj|BAH37993.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 170

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A H + P+    +A A   + + + +++  L   G V + +G  GG  +    
Sbjct: 11  LHVLLHMAEH-EGPSTSESLARAMDTNPVVVRRVMAGLRDRGFVRSEKGPGGGWTIACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            ++T+ DV +A  E   +A    S    C +  +    L     +A         + ++ 
Sbjct: 70  RRVTLRDVYEALGEPRLLAIGNRSEAPQCLVEQAVNATLGDAFAEAEALLLQRFGEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|152994406|ref|YP_001339241.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835330|gb|ABR69306.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
          Length = 152

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++     D P    +IA     + + + + +  L   G V +V+G  
Sbjct: 10  RLSRM----LHVLIHM-NQLDAPATSEKIASMLNTNPVVVRRTMAGLRDKGYVSSVKGHG 64

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
           GG  L      IT+LD+  A  ES       +     CP+  +    ++ VL +A     
Sbjct: 65  GGWSLAISLSDITLLDIHNAIGESSVFTIGLSDEHTSCPIEIAVNQAISDVLIEAEALLL 124

Query: 120 DVLTQYSIECLV 131
           +     ++E L 
Sbjct: 125 ERFRDVTLEMLA 136


>gi|301299314|ref|ZP_07205599.1| transcriptional regulator [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853054|gb|EFK80653.1| transcriptional regulator [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 153

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ +     ++IA +   +   +  ++  L KAG++    G 
Sbjct: 1   MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L +PA +I++LDV +A   +  +         +C +  +    L  V ++  NA 
Sbjct: 61  A-RASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNRLEEVYQRVQNAA 119

Query: 119 FDVLTQYSIECLVR 132
              ++Q SI+ ++ 
Sbjct: 120 ELEMSQISIQDVID 133


>gi|307569980|emb|CAR83159.1| transcriptional regulator, putative [Listeria monocytogenes L99]
          Length = 155

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  +     S+I A +   +   + +I+  L K+ ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G+     L RP ++I++LDV K+ E +  +         DC +  +    LTS       
Sbjct: 60  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 118

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
                + +  ++ +VR+ S ++
Sbjct: 119 KMELEMEKIKLDSIVRDISVLE 140


>gi|291562340|emb|CBL41156.1| Predicted transcriptional regulator [butyrate-producing bacterium
           SS3/4]
          Length = 143

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK TDY +R+L      +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 1   MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
            GG  L    D  ++ D++    E   +  C      +C      G C +   L      
Sbjct: 59  LGGCALSCDLDATSLYDLMGVVGERGILCACM-EPGYECRWQDKHGRCAIHCQLAALQQK 117

Query: 118 FFDVLTQYSIECLV 131
             +     S+  L+
Sbjct: 118 QDEAFRAVSLRRLL 131


>gi|301166543|emb|CBW26119.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 159

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + K+ +Y +  L +            +I +          K++Q +    I+ +V+G +
Sbjct: 3   KVNKKVEYALMALKFMVEKGGELTSAREICDHFKTPFDTTAKVMQVMNSHDILSSVKGIK 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  +      I+ L + +  E     + C  ++K  C L   C + + +          
Sbjct: 63  GGYTINVDLSTISYLKLARIIEAKEVKSIC-QTNKGLCELHCDCNIVNPMSTLSEKLNQF 121

Query: 122 LTQYSIECLV 131
           L   SI+ L+
Sbjct: 122 LNSLSIQELL 131


>gi|149279571|ref|ZP_01885700.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
           BAL39]
 gi|149229607|gb|EDM34997.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
           BAL39]
          Length = 136

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L      N        +A +  I+ + + K L  L   G V +  G+ GG  L + 
Sbjct: 9   SLHILTLLEKANGELMSSDYMAGSININPVIVRKELINLRNKGFVTSKEGKNGGSMLAKA 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSI 127
           A QI++ +V  A  ++  +     S    CP+         ++           L + ++
Sbjct: 69  ASQISLDEVYLAVRQNNLLGSSKNSPNPLCPVGRQINTHLDTLYETTEQVLVRELAKKTL 128

Query: 128 ECLVRN 133
               R 
Sbjct: 129 ADFSRE 134


>gi|146317979|ref|YP_001197691.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33]
 gi|146320166|ref|YP_001199877.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33]
 gi|253751201|ref|YP_003024342.1| transcription regulation protein [Streptococcus suis SC84]
 gi|253753102|ref|YP_003026242.1| transcription regulation protein [Streptococcus suis P1/7]
 gi|145688785|gb|ABP89291.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33]
 gi|145690972|gb|ABP91477.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33]
 gi|251815490|emb|CAZ51068.1| putative transcription regulation protein [Streptococcus suis SC84]
 gi|251819347|emb|CAR44720.1| putative transcription regulation protein [Streptococcus suis P1/7]
 gi|292557762|gb|ADE30763.1| hypothetical protein SSGZ1_0298 [Streptococcus suis GZ1]
 gi|319757471|gb|ADV69413.1| hypothetical protein SSUJS14_0308 [Streptococcus suis JS14]
          Length = 149

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +    I  L +  +  +        +A +   + + +  +L  L +AGIV+  +G
Sbjct: 1   MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113
             GG RL +  D I++ D+    +  +   +     +   DC + G+  + +     L +
Sbjct: 61  -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVGGN--IHAAVDDKLVQ 117

Query: 114 ALNAFFDVLTQYSIEC-LVRNRSSIKK 139
              A    L    +   LV    +I++
Sbjct: 118 VQTAMEKELKTMYMSDVLVDLEKAIEE 144


>gi|217965465|ref|YP_002351143.1| transcription regulator [Listeria monocytogenes HCC23]
 gi|217334735|gb|ACK40529.1| transcription regulator [Listeria monocytogenes HCC23]
          Length = 161

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  +     S+I A +   +   + +I+  L K+ ++ T  
Sbjct: 7   MKYSIQFSD-AIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQT 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G+     L RP ++I++LDV K+ E +  +         DC +  +    LTS       
Sbjct: 66  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQ 124

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
                + +  ++ +VR+ S ++
Sbjct: 125 KMELEMEKIKLDSIVRDISVLE 146


>gi|126442914|ref|YP_001062331.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126222405|gb|ABN85910.1| DNA-binding protein [Burkholderia pseudomallei 668]
          Length = 153

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|253754924|ref|YP_003028064.1| transcription regulation protein [Streptococcus suis BM407]
 gi|251817388|emb|CAZ55124.1| putative transcription regulation protein [Streptococcus suis
           BM407]
          Length = 149

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ +    I  L +  +  +        +A +   + + +  +L  L +AGIV+  +G
Sbjct: 1   MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV----LRK 113
             GG RL +  D I++ D+    +  +   +     +   DC + G+  + +     L +
Sbjct: 61  -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVEGN--IHAAVDDKLVQ 117

Query: 114 ALNAFFDVLTQYSIEC-LVRNRSSIKK 139
              A    L    +   LV    +I++
Sbjct: 118 VQTAMEKELKTMYMSDVLVDLEKAIEE 144


>gi|121596479|ref|YP_989904.1| transcriptional regulator [Burkholderia mallei SAVP1]
 gi|238561365|ref|ZP_00442000.2| transcriptional regulator [Burkholderia mallei GB8 horse 4]
 gi|251767118|ref|ZP_02266036.2| transcriptional regulator [Burkholderia mallei PRL-20]
 gi|254200768|ref|ZP_04907133.1| transcriptional regulator [Burkholderia mallei FMH]
 gi|254204740|ref|ZP_04911093.1| transcriptional regulator [Burkholderia mallei JHU]
 gi|121224277|gb|ABM47808.1| transcriptional regulator [Burkholderia mallei SAVP1]
 gi|147748380|gb|EDK55455.1| transcriptional regulator [Burkholderia mallei FMH]
 gi|147754326|gb|EDK61390.1| transcriptional regulator [Burkholderia mallei JHU]
 gi|238524554|gb|EEP87986.1| transcriptional regulator [Burkholderia mallei GB8 horse 4]
 gi|243063862|gb|EES46048.1| transcriptional regulator [Burkholderia mallei PRL-20]
          Length = 172

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 25  RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  E    +    + + DC +  +    +T  L +A     
Sbjct: 80  GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 139

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 140 ARFGAITVGDLARD 153


>gi|315651558|ref|ZP_07904578.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
           3986]
 gi|315486213|gb|EFU76575.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
           3986]
          Length = 170

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        D        ++ +   + + +  IL  L KAG++   RG
Sbjct: 29  MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLITVARG 88

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG+ + R   +I+  D+  A E  +   +     S    CP+  +  +  +L     K
Sbjct: 89  -TGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPLCPVGKN--IHRLLDDKLVK 145

Query: 114 ALNAFFDVLTQYSIECL 130
              A  + + +Y++  +
Sbjct: 146 IQEAMENKMKEYTLLDI 162


>gi|186476514|ref|YP_001857984.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192973|gb|ACC70938.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
           STM815]
          Length = 164

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 10/139 (7%)

Query: 1   MHL--------TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
           M +        + R  + + VL   ++    P     IA +   + + + ++L  L +AG
Sbjct: 4   MRIGWSRAVNTSSRFAFAVHVLALLSLQEGVPLSSDLIAGSVNTNPVLIRRLLAMLAEAG 63

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSV 110
           +  +  G  GG  L R  + IT+LD+ +A +++   A    +    C +  +    LT +
Sbjct: 64  LTSSQLGAGGGALLARQPEDITLLDIYRAVDDAQLFAMHRETPNPACMVGRNIQTVLTGI 123

Query: 111 LRKALNAFFDVLTQYSIEC 129
           +  A  A    L   ++  
Sbjct: 124 IGDAQQALEASLASRTLAD 142


>gi|153006117|ref|YP_001380442.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029690|gb|ABS27458.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 173

 Score = 79.2 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VLM+ A  ++ P     +AE    + + + +++  + +AG V   +GR GG  +    
Sbjct: 11  LHVLMHMA-RSNGPFTSEHMAEMLGTNPVVVRRMMGAVREAGYVRAEKGRGGGWTIACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
              T+ DV +A       A         C +  +    L   +R A       L Q ++ 
Sbjct: 70  GTTTLRDVYQAVGSPTLFAIGSGGSNSSCAVERAVNGALRDAVRSAQELLLARLGQVTLA 129

Query: 129 CLVR 132
            L  
Sbjct: 130 DLAA 133


>gi|331001950|ref|ZP_08325470.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411746|gb|EGG91151.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 142

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M ++ R    + +        D        ++ +   + + +  IL  L KAG++   RG
Sbjct: 1   MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLITVARG 60

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
             GG+ + R   +I+  D+  A E  +   +     S    CP+  +  +  +L     K
Sbjct: 61  -TGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPMCPVGKN--IHRLLDDKLVK 117

Query: 114 ALNAFFDVLTQYSIECL 130
              A  + + +Y++  +
Sbjct: 118 IQEAMENKMKEYTLLDI 134


>gi|149924361|ref|ZP_01912728.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149814749|gb|EDM74321.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
              IAE   I   +L +I+  L KAG V   RG RGG RL +PA +I + DV+   
Sbjct: 8  SAHVIAEQQGIPSRYLEEIIGELRKAGFVVGKRGPRGGYRLAKPASEIAVADVINVL 64


>gi|160942852|ref|ZP_02090092.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445904|gb|EDP22907.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii
           M21/2]
          Length = 146

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK TDY +R+L      +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 4   MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
            GG  L    D  ++ D++    E   +  C       C      G C +   L      
Sbjct: 62  LGGCALSCDLDATSLYDLMGVVGERGILCACMEPG-YKCRWQDKHGRCAIHCQLAALQQK 120

Query: 118 FFDVLTQYSIECLV 131
             +     S+  L+
Sbjct: 121 QDEAFRAVSLRRLL 134


>gi|32472663|ref|NP_865657.1| hypothetical protein RB3680 [Rhodopirellula baltica SH 1]
 gi|32443900|emb|CAD73341.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 180

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++ A   D P     +++    + + + +++  L +   V +V+G  GG  L    
Sbjct: 34  LHILLHMA-ELDEPVTSDDLSKIMDTNPVVVRRLMAGLREQQYVLSVKGHGGGWTLACEL 92

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+LD+ +A      +A    +    C +  S    L     +A       L + ++ 
Sbjct: 93  ADVTLLDIYEAVGSPRLLAMGNRTEAPGCLVEQSVNAALGKTFDEAEQRLLRRLGEVTLA 152

Query: 129 CLVRN 133
            L  +
Sbjct: 153 SLSAD 157


>gi|107022281|ref|YP_620608.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116689227|ref|YP_834850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105892470|gb|ABF75635.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia AU 1054]
 gi|116647316|gb|ABK07957.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia HI2424]
          Length = 151

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120

Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144
              L   ++      ++      ++   AG
Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150


>gi|218462085|ref|ZP_03502176.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
          Length = 117

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVG-----S 104
           AGI++TV G RGG +L +  ++I++LD++ A E       C     +   P+        
Sbjct: 3   AGILDTVPGPRGGYKLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKP 62

Query: 105 CGLTSVLRKALNAFFDVLTQYSIECL 130
           C +++ + +A   +   L + SI  L
Sbjct: 63  CTISAAMLRAERVYRAELAKTSIADL 88


>gi|327470601|gb|EGF16057.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 160

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L   +   +       +A +   +  ++ K++  L  AG++ + +G+ G  
Sbjct: 20  TKFSVALHILTMISESRET-LSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGKSG-Y 77

Query: 65  RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
           +L +   ++++L++  AT+E     + +   +   +C +  +    ++ +   A      
Sbjct: 78  QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECSVGQNIQEAVSPIFAIAEAQLEK 137

Query: 121 VLTQYSIECLVRN 133
            L   +++ ++ N
Sbjct: 138 ALRHQTLDDVINN 150


>gi|329937551|ref|ZP_08287109.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045]
 gi|329303427|gb|EGG47314.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045]
          Length = 148

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 1   MHLTKRTDYGI--RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +  T + +   VL Y A + + +P    +++ +  ++ +++ ++L PL +AG+V + 
Sbjct: 1   MARSTNTQFAVAVHVLTYLAGVTDGHPVSSEELSSSANVNAVYVRRVLGPLREAGLVRSR 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-N 116
            G RGG  L      I +  V    + +  V                    + L +A+ +
Sbjct: 61  PGVRGGWELAGDPAGIPLAQVWSLLQGTDPVLGLHGPDPACATGRQVQKSLTTLDRAVAD 120

Query: 117 AFFDVLTQYSIECLV 131
           +    L ++++  ++
Sbjct: 121 SVTATLRRFTVRDVL 135


>gi|225619098|ref|YP_002720324.1| transcriptional regulator [Brachyspira hyodysenteriae WA1]
 gi|225213917|gb|ACN82651.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1]
          Length = 115

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE- 83
              S I+++  ++ + +  IL  L KA I+   RG  GG+ L R  + I +LD+  A E 
Sbjct: 1   MTSSLISDSVNVNPVIIRNILIQLQKADIITVKRG-TGGISLNRKIENINLLDIFNAVES 59

Query: 84  -ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
            ++  +     +    CP+       L   L    NA    L + +++ +
Sbjct: 60  LDNNKLFSFHENPNKKCPVGSRINDILQPKLDDVQNAMEKELKKTTLKDI 109


>gi|170732528|ref|YP_001764475.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|254245838|ref|ZP_04939159.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184]
 gi|124870614|gb|EAY62330.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184]
 gi|169815770|gb|ACA90353.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           cenocepacia MC0-3]
          Length = 151

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGMPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R   +IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120

Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144
              L   ++      ++      ++   AG
Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150


>gi|295103291|emb|CBL00835.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii
           SL3/3]
          Length = 143

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +TK TDY +R+L      +   + +++++E   I   F ++IL+ L    +V   RG 
Sbjct: 1   MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
            GG  L    D  ++ D++    E   +  C      +C      G C +   L      
Sbjct: 59  LGGCELSCDLDATSLYDLMGVVGERGILCACMEPG-YECRWQDKHGRCTIHCQLAALQQK 117

Query: 118 FFDVLTQYSIECLV 131
             +     S+  L+
Sbjct: 118 QDEAFRAVSLRRLL 131


>gi|288906031|ref|YP_003431253.1| hypothetical protein GALLO_1840 [Streptococcus gallolyticus UCN34]
 gi|306834188|ref|ZP_07467308.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC
           700338]
 gi|288732757|emb|CBI14331.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|304423761|gb|EFM26907.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC
           700338]
          Length = 146

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 1   MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    + +L+      N      + +A +   + + +  +L  L KA +V+   G
Sbjct: 1   MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116
             GG  L +   ++T  D+ +A E+ +  + +       +CP+    +  L   + +   
Sbjct: 61  V-GGAHLTKAPQELTFWDIFQAVEDKNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEVQE 119

Query: 117 AFFDVLTQYSIECLVRN 133
            F   L   ++  L+ +
Sbjct: 120 NFKASLENITLASLITD 136


>gi|300812053|ref|ZP_07092503.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|313122806|ref|YP_004033065.1| transcriptional regulator, badm/rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|300496979|gb|EFK32051.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|312279369|gb|ADQ60088.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 142

 Score = 78.8 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L+Y  I  D       IA +   +   +  ++  L KAG+++T +G 
Sbjct: 1   MKFSHKLSDAVHLLVYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L +  ++I++ D+  A      +       +  CP+ G+    L     +   A 
Sbjct: 60  SAEPELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
           F  + + S+  +V       ++
Sbjct: 120 FAKMREISLREIVDQIKEDGQL 141


>gi|170702204|ref|ZP_02893109.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|172060143|ref|YP_001807795.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170132890|gb|EDT01313.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           IOP40-10]
 gi|171992660|gb|ACB63579.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MC40-6]
          Length = 151

 Score = 78.8 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L R   +IT+LDV +A +++   A    +    C +     +  VL      A  
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   ++  +  +
Sbjct: 119 AMEASLATRTLADVTAD 135


>gi|297163402|gb|ADI13114.1| hypothetical protein SBI_09996 [Streptomyces bingchenggensis BCW-1]
          Length = 144

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
               L +  +            QIA +   + + + ++L  L +AG+VE+ RG   G  L
Sbjct: 10  AAHALAWIGLYQRQGHEVATSEQIATSANTNPVVIRRLLGELRRAGLVESRRGVGAGWSL 69

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
            R    +T+LDV +A E     A    +    C +       +  +           L +
Sbjct: 70  ARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGYGIQPAMQGIYEGIEETLRHELAR 129

Query: 125 YSIECLVRN 133
            ++E ++R+
Sbjct: 130 VTLENVLRD 138


>gi|313625047|gb|EFR94927.1| BadM/Rrf2 family transcriptional regulator [Listeria innocua FSL
           J1-023]
          Length = 155

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 1   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQT 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G+     L +P ++I++LDV K+ E +  +         DC +  +  +  VL       
Sbjct: 60  GKA-NPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGAN--IQQVLSSKYELL 116

Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
                  + +  ++ ++ + S ++
Sbjct: 117 QQKLELEMDEIKLDSIIHDISVLE 140


>gi|300214658|gb|ADJ79074.1| Transcription regulator [Lactobacillus salivarius CECT 5713]
          Length = 153

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+ +     ++IA +   +   +  ++  L KAG++    G 
Sbjct: 1   MKHSYKLSDAIHILTYVDIYKNDDLSSTRIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +PA +I++LDV +A   +  +         +C +  +    L  V ++  NA 
Sbjct: 61  A-RASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQNAA 119

Query: 119 FDVLTQYSIECLVR 132
              ++Q SI+ ++ 
Sbjct: 120 ELEMSQISIQDVID 133


>gi|296117471|ref|ZP_06836058.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295975992|gb|EFG82783.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 140

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 10  GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            I +++  A H         + IA+   ++   +  +LQ L ++G++E++RG RGG RL 
Sbjct: 3   AILIMLDVAFHAGRNGTVSAADIADRANLARRGIEPLLQTLSRSGLLESIRGPRGGYRLG 62

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RP   I + D+++         +   + ++   ++  C      ++  +       + ++
Sbjct: 63  RPRRDILLSDILEVVTADES-TDGGPTGQLFEKVIEPC-----WKELDDTVEKRCRKLTL 116

Query: 128 ECLVRNRS 135
           + LV+   
Sbjct: 117 DDLVKRAE 124


>gi|171322497|ref|ZP_02911294.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
 gi|171092170|gb|EDT37571.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           MEX-5]
          Length = 151

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L R   +IT+LDV +A +++   A    +    C +     +  VL      A  
Sbjct: 61  GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   ++  +  +
Sbjct: 119 AMEASLATRTLADVTAD 135


>gi|270261370|ref|ZP_06189643.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044854|gb|EFA17945.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 179

 Score = 78.5 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A      +  + +A     +  F+ K++ PL K GI+ +  GR G + L RP ++IT
Sbjct: 34  VALAEKQGLRSTSAILAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPVEEIT 93

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129
           + D+  +  +   +          C +   +C    SV+ +A  A   VL ++++  
Sbjct: 94  LRDIYLSVIDDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLAVLERHTVAD 150


>gi|315925641|ref|ZP_07921851.1| transcriptional regulator superfamily protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621182|gb|EFV01153.1| transcriptional regulator superfamily protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 152

 Score = 78.1 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +T++TDY IR+L   A  +    +I  +AE   +   F +KI + L +AGIV   RG 
Sbjct: 1   MLITRKTDYAIRLLRGIA--DGGKKKIPVLAENEQVPRPFAYKITKKLQQAGIVAVGRGA 58

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116
            GG  L RP    T+LD+++A ++   V  C       C         C     + +   
Sbjct: 59  AGGTSLNRPLAAFTLLDLLRALDDYPTVTAC-TRAPYHCDWCEHHRMACCAHQHMSQIQR 117

Query: 117 AFFDVLTQYSIECLV 131
                L  ++++ ++
Sbjct: 118 RLEAELAAHTLQAVI 132


>gi|167578112|ref|ZP_02370986.1| Transcriptional regulator family protein [Burkholderia
           thailandensis TXDOH]
          Length = 153

 Score = 78.1 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D +T+LDV +A  +    +    + + DC +  +    +T  L +A     
Sbjct: 61  GGWELACELDAMTLLDVYRAIGQPPLFSIGSHADQPDCLVEKAVDARMTEALNEAETLLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGGITVGDLARD 134


>gi|325685122|gb|EGD27251.1| Rrf2 family transcriptional regulator [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 142

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L Y  I  D       IA +   +   +  ++  L KAG+++T +G 
Sbjct: 1   MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L +  ++I++ D+  A      +       +  CP+ G+    L     +   A 
Sbjct: 60  NAEPELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
           F  + + S+  +V       ++
Sbjct: 120 FAKMREISLREIVDQIKEEGQL 141


>gi|253574515|ref|ZP_04851856.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846220|gb|EES74227.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 135

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 3/106 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y     D      QIA +       + K+L  L +  +V T  G RGG  L   
Sbjct: 8   AVHCLLYLDSKEDRMANSEQIACSVATHPARVRKVLSLLRRHDLVTTKEGARGGYLLKCE 67

Query: 70  ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
             Q+T+ D+ +   + S     C  S    C +  +  + +V+ + 
Sbjct: 68  LSQVTLGDLYRIFAQGSLHPNWCSGSEHSSCNISSN--IPAVMNQI 111


>gi|308069350|ref|YP_003870955.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858629|gb|ADM70417.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 144

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  ++ R    + +L    +     +   +IA +   + + + +I+  L KAG +ET  G
Sbjct: 1   MKQISSRFSMAVHILSMITLDP-IYSTGDRIARSINSNPVVIRRIMAQLKKAGYIETKPG 59

Query: 60  RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             G   L    +++T+L++ +A E  +   + +       +C +  +    L   L  A 
Sbjct: 60  VSGASLLI-SPERLTLLNIFQAVESVDGNQLFKIHKDADPNCSVGMNIESILLPQLSNAQ 118

Query: 116 NAFFDVLTQYSIECLVRN 133
            A    L   ++  +V  
Sbjct: 119 KAMEHELASVTLAQIVEQ 136


>gi|159184929|ref|NP_354795.2| hypothetical protein Atu1813 [Agrobacterium tumefaciens str. C58]
 gi|159185848|ref|NP_356954.2| hypothetical protein Atu3663 [Agrobacterium tumefaciens str. C58]
 gi|159140208|gb|AAK87580.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
 gi|159140982|gb|AAK89739.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 140

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  +         +IA+    + + + + L  L ++GIV +  GR GG +L R  
Sbjct: 12  LHVLVHMGLLGGRE-TSERIAQMLNTNPVVVRRTLGALRESGIVVSEGGRGGGWKLIRSL 70

Query: 71  DQITILDVVKA-TEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSI 127
           DQIT+LDV +A  E     A   +    +CP     +  L      A  A     ++ ++
Sbjct: 71  DQITVLDVQRALVEGQMLPAP-LSKDHPNCPVERASNAVLERAHCLAEAALRTAYSETTL 129

Query: 128 ECLVR 132
             +  
Sbjct: 130 AQIAE 134


>gi|154251426|ref|YP_001412250.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155376|gb|ABS62593.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
           lavamentivorans DS-1]
          Length = 154

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++   H D P     +A A   + + + +I+  L +AG V + +G  GG  +    
Sbjct: 11  LHVLLHMDAH-DAPMTSEVLAGAMQTNPVVIRRIMAGLREAGYVRSEKGHGGGWSIACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+ +A      +A    +    C +  +    LT    +A       L   ++ 
Sbjct: 70  KAVTLRDIHEALGGPSLLAIGNRTEAPGCLVEQAVNAALTQAFDEAEALLLKRLGGVTLA 129

Query: 129 CLVRN 133
            L R+
Sbjct: 130 ALARD 134


>gi|157370170|ref|YP_001478159.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321934|gb|ABV41031.1| transcriptional regulator, BadM/Rrf2 family [Serratia
           proteamaculans 568]
          Length = 161

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A      +  + +A     +  F+ K++ PL K GI+ +  GR G + L RPA+QIT
Sbjct: 16  VAVAEKLGVRSTSAVLAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPAEQIT 75

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129
           + D+  +  E   +          C +   +C    SV+ +A  A  +VL  Y++  
Sbjct: 76  LRDIYLSVIEDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLNVLAGYTVAD 132


>gi|192360374|ref|YP_001984189.1| transcriptional regulator family [Cellvibrio japonicus Ueda107]
 gi|190686539|gb|ACE84217.1| Transcriptional regulator family [Cellvibrio japonicus Ueda107]
          Length = 166

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++ A   + P     +A+    + + + ++L  L + G+V + +G  GG  L R  
Sbjct: 11  LHILLHMA-EAELPMTSDALAKMMKTNPVVIRRMLAGLREQGLVCSEKGHGGGWTLGREL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             I++ D+  A +E   +A    +    C +  +    L +   +A     +   Q S+ 
Sbjct: 70  ASISLYDIYSALDEPTLLAMGNRTESPGCLVEQAVNSALNNTFGEAEALLLNCFRQVSLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 QLSAD 134


>gi|332185085|ref|ZP_08386834.1| transcriptional regulator family protein [Sphingomonas sp. S17]
 gi|332014809|gb|EGI56865.1| transcriptional regulator family protein [Sphingomonas sp. S17]
          Length = 143

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A H + P     IA     + + + + +  L   G V   +G  GG  + +P 
Sbjct: 11  LHVLLHMARH-ERPMTSEAIARMLGTNPVVVRRTMAGLRDVGYVGPEKGHGGGWEIAQPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
             + +LDV +A       A    +   DC +  +    L   LR A       L   S+ 
Sbjct: 70  QSVCLLDVHRAVGGPRLFAIGHENAHADCAVEKAVNTALDDALRDAETLLVARLDAISLA 129

Query: 129 CLVRN 133
            L R+
Sbjct: 130 ELARD 134


>gi|149183666|ref|ZP_01862080.1| YrzC [Bacillus sp. SG-1]
 gi|148848614|gb|EDL62850.1| YrzC [Bacillus sp. SG-1]
          Length = 83

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 56  TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           ++RG  GG  L     QIT  D+++  E      E     +             +  +  
Sbjct: 1   SIRGAYGGYVLGNEPSQITAGDIIRILEGPISPVEGIEDEEP--------AKRELWMRIR 52

Query: 116 NAFFDVLTQYSIECLV 131
           +A  +VL   +IE L 
Sbjct: 53  DAVKEVLDNTTIEDLA 68


>gi|134295230|ref|YP_001118965.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134138387|gb|ABO54130.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
           vietnamiensis G4]
          Length = 146

 Score = 78.1 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++ +  P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQDGVPLSSEIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L R    I++LDV +A +++   A    +    C +     +  VL      A  
Sbjct: 61  GGGALLAREPGDISLLDVYRAVDDAQLFALHREAPNPACMVGRH--IQGVLIDYIGDAQR 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   ++  +  +
Sbjct: 119 AMEASLATRTLADVTAD 135


>gi|307327145|ref|ZP_07606334.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887226|gb|EFN18223.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
           violaceusniger Tu 4113]
          Length = 149

 Score = 77.7 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 10  GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +++++  A+    +  P   +++A     +   + K+L PL + G+V  V+GR GG  L
Sbjct: 9   ALQLMLLLAVAAEDDGAPLSSAELARMLNTNPSLVRKLLVPLAEEGLVVCVKGRTGGAML 68

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            RP D+IT+ ++ +       +  C    +  C +    G    ++  +A  A  D L  
Sbjct: 69  GRPTDRITLAEIYRCAVGDKPLWACSPGVEPVCQVTAHAGEYFAALTAEAEEAVLDSLGD 128

Query: 125 YSIECLVRNRSSI 137
            ++   VR    +
Sbjct: 129 RTLADSVRELRRL 141


>gi|213971257|ref|ZP_03399374.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383893|ref|ZP_07232311.1| hypothetical protein PsyrptM_14720 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063596|ref|ZP_07255137.1| hypothetical protein PsyrptK_26743 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131005|ref|ZP_07256995.1| hypothetical protein PsyrptN_06391 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924010|gb|EEB57588.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 148

 Score = 77.7 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA++I +LDV +A E++   +    +    C + G+    L   L +A  A 
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDTELFSSHRMAPCEQCAVGGNILEALAPTLGRARTAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D L + ++  +    + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141


>gi|330994153|ref|ZP_08318081.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter
           sp. SXCC-1]
 gi|329758620|gb|EGG75136.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter
           sp. SXCC-1]
          Length = 148

 Score = 77.7 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 6   RTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           RT   I +++  A H         + IAE   ++   +  +LQ L ++G++E+VRG RGG
Sbjct: 7   RTMIAILIMLDVAFHAGRNGTISAADIAERAGLARRGIEPLLQTLSRSGLLESVRGPRGG 66

Query: 64  VRLCRPADQITILDVVKAT-----EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            RL RP   I + D++         +   V + F+     C            ++  +  
Sbjct: 67  YRLGRPRRDILLADILSVITAEDNRDDGPVGDLFSKVVEPC-----------WQQFDSMI 115

Query: 119 FDVLTQYSIECLVRNRS 135
                + S++ LVR   
Sbjct: 116 DAECHKISLDDLVRRAE 132


>gi|28869602|ref|NP_792221.1| hypothetical protein PSPTO_2406 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852844|gb|AAO55916.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018967|gb|EGH99023.1| hypothetical protein PLA106_23258 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 148

 Score = 77.7 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA++I +LDV +A E++   +    +    C + G+    L   L +A  A 
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEQCAVGGNILEALAPTLGRARTAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D L + ++  +    + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141


>gi|325525923|gb|EGD03623.1| putative transcriptional regulator [Burkholderia sp. TJI49]
          Length = 158

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L R   +IT+LD+ +A +++   A    +    C +       L   +  A  A 
Sbjct: 61  GGGALLAREPGEITLLDIYRAVDDAQLFALHREAPNPACLVGRHIQGALIGYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|169335460|ref|ZP_02862653.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258198|gb|EDS72164.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM
           17244]
          Length = 141

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-RRGGVRLCR 68
            +  L++   H        +I+E  CI+     KIL  L KAG+V+T  G  +GG     
Sbjct: 8   SVHALVFLNHHYKEFKTSEEISENICINPARARKILSKLKKAGLVKTREGSVKGGYSFVL 67

Query: 69  PADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125
            A  IT+LDV +A           + +  ++C +    G  +  V  +      + L + 
Sbjct: 68  NAANITLLDVYEAIGNKVVDISWRSGNVNMECLIASGMGDIMDGVYERLDEVCKEELNKI 127

Query: 126 SIECL 130
           +I+ +
Sbjct: 128 TIKDI 132


>gi|257064536|ref|YP_003144208.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256792189|gb|ACV22859.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 152

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L+        P   +QIAE+   +  ++ ++   L  AGI+ +  GR G   L  P
Sbjct: 9   AVHLLI-LVSEAQTPMSSAQIAESIGTNPSWVRRLATALRGAGIIASRPGRTG-FVLAVP 66

Query: 70  ADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125
           AD++T+LDV +A   +E+  V +   +    C +       +  +      A    L   
Sbjct: 67  ADELTLLDVYRAACGQETVRVFDAHRNPSDKCIVGRHIRPVIGDLFADVDEAAMRALEGR 126

Query: 126 SIEC 129
           ++  
Sbjct: 127 TLAD 130


>gi|228927217|ref|ZP_04090280.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832543|gb|EEM78117.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 153

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 54/135 (40%), Gaps = 3/135 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L       +  L+Y            Q+++  C++ + + K+++ L K G++ T  G  
Sbjct: 16  QLNSEFIIAVHCLVYLNHVPGNMATSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFT 75

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAF 118
           GG        ++T+  + + T  +   +   + H + DC +    G  +T +  +    +
Sbjct: 76  GGYIFKHNPKEVTLGQIYELTSNNSLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCY 135

Query: 119 FDVLTQYSIECLVRN 133
              L   +++ +V  
Sbjct: 136 KLFLDGINVQDVVEK 150


>gi|254524248|ref|ZP_05136303.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
           SKA14]
 gi|219721839|gb|EED40364.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
           SKA14]
          Length = 151

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + V+ +    +  P    Q+A       + + ++L  L KAG+V + RG  GG +L R 
Sbjct: 10  ALHVMAHLVGQS-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVHSARGHGGGSQLARD 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125
           A  IT+ D+  A      V          CP+     + S L    R+A       L   
Sbjct: 69  AATITLHDIYLAVGAPPLVQVGTRGSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAA 126

Query: 126 SIECL 130
           +++ L
Sbjct: 127 TLDQL 131


>gi|167621798|ref|YP_001676583.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167351539|gb|ABZ74269.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 142

 Score = 77.7 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  ++R    +  L+Y A        P R  ++A +   S + + ++   LVKAG++ + 
Sbjct: 1   MSESQRFPTAVHALVYLAHSKATPHQPVRSVELACSVNASHVGVRRVTARLVKAGLIGSQ 60

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL----TSVLRK 113
            GR+GG  L    ++IT+  V++A      +     +         +  L     + + +
Sbjct: 61  DGRKGGAWLRADPERITLDQVLEAVAGPVRL----GATPPSWADEPAGSLGTAIVAAIAQ 116

Query: 114 ALNAFFDVLTQYSIECLVR 132
           A  A    L++ SI  LV 
Sbjct: 117 AEAAMLQRLSKISIADLVD 135


>gi|134101553|ref|YP_001107214.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914176|emb|CAM04289.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 146

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 10  GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            ++V+++ A+  +  +     +Q+A     +   + K+L PL   G+V   +GR GG RL
Sbjct: 8   ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAGGARL 67

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            RPAD+IT+ ++ +       +  C    +  C +         ++  +A  A    L  
Sbjct: 68  GRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVLASLGD 127

Query: 125 YSIECLVRNRSSI 137
            ++   V    S+
Sbjct: 128 RTLAESVGELRSL 140


>gi|227515093|ref|ZP_03945142.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086541|gb|EEI21853.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 120

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    I +L +  ++ +       ++ +  IS + + +++  L +AG+V+T +G 
Sbjct: 7   MRASTRFSDAIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQG- 65

Query: 61  RGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
               RL R   +IT+ DV  A E       +          C + G   +  +L + 
Sbjct: 66  TAQPRLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGH--IQPILAEV 120


>gi|330820621|ref|YP_004349483.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
          BSR3]
 gi|327372616|gb|AEA63971.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
          BSR3]
          Length = 148

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++     +  L++     + P     IA   C + + + ++L  L  AG V++ +G  
Sbjct: 6  RLSRM----LHALIHM-NRAEGPLTSEAIAAMLCTNAVVVRRLLGGLRDAGYVQSEKGHG 60

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          GG  L    D IT+LDV +A  E    +E  +     C
Sbjct: 61 GGWTLAVSLDAITLLDVYRAVGEPPLFSELVSEDDPQC 98


>gi|291008165|ref|ZP_06566138.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 150

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 10  GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            ++V+++ A+  +  +     +Q+A     +   + K+L PL   G+V   +GR GG RL
Sbjct: 12  ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAGGARL 71

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            RPAD+IT+ ++ +       +  C    +  C +         ++  +A  A    L  
Sbjct: 72  GRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVLASLGD 131

Query: 125 YSIECLVRNRSSI 137
            ++   V    S+
Sbjct: 132 RTLAESVGELRSL 144


>gi|325261234|ref|ZP_08127972.1| putative Rrf2 family protein [Clostridium sp. D5]
 gi|324032688|gb|EGB93965.1| putative Rrf2 family protein [Clostridium sp. D5]
          Length = 139

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H        ++A   C + + + K++  L K  +++T  G +GG ++ +P
Sbjct: 8   AVHALVYL-DHKQETLSSEELAGNICTNPVRVRKVMARLKKHKLLDTKEGLKGGYKIAQP 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121
            ++I++  +  A E     A   + +     +   C + S +   ++  +          
Sbjct: 67  PEKISLKQICDALEMDIVKASWHSGN-----IDMPCLVASGMAGVMDGIYGDLNKIGKQY 121

Query: 122 LTQYSIECL 130
           L   +I+ +
Sbjct: 122 LETITIKDI 130


>gi|153010905|ref|YP_001372119.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
           ATCC 49188]
 gi|151562793|gb|ABS16290.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
           ATCC 49188]
          Length = 154

 Score = 77.3 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A H   P     +A+A   + + + +++  L + G V + +G  GG  +    
Sbjct: 11  LHVLLHMAEHKG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           +++T+ D+ +A  E   +A    +    C +  +    L+     A N   +   + ++ 
Sbjct: 70  NKVTLRDIYEAIGEPALLAMGNRTEMPGCLVEQAVNASLSKAFTDAENLLLERFGEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 MLSAD 134


>gi|115351142|ref|YP_772981.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115281130|gb|ABI86647.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
           AMMD]
          Length = 151

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L R   +IT+LDV +A +++   A    +    C +     +  VL      A  
Sbjct: 61  GGGALLAREPGKITLLDVYRAVDDAQLFALHREAPNPACLVGRH--IQGVLIDYIGDAQR 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   ++  +  +
Sbjct: 119 AMEASLATRTLADVTAD 135


>gi|330992283|ref|ZP_08316231.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760482|gb|EGG76978.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
           SXCC-1]
          Length = 149

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 6   RTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           RT   + +++  A +   + P    +IAE   ++   L  ILQ L +AG+++ VRG  GG
Sbjct: 7   RTAIALVIMLDVAFYGTAERPVSTIEIAERSSLARRGLEPILQGLARAGLLKGVRGPHGG 66

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL- 122
            RL  PA +I + D+ +                            +V+R  L+    +L 
Sbjct: 67  YRLALPAREILLSDICRIA---------LHDGAHAADRRQGALFNTVIRPFLDQMDGLLA 117

Query: 123 ---TQYSIECLVRNRSSIKKI 140
              ++ +++  VR ++ ++ +
Sbjct: 118 HEYSKLTLQDFVR-QAEMRGL 137


>gi|330958789|gb|EGH59049.1| hypothetical protein PMA4326_09575 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 148

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    +  L   A+ +  P R   +A +     + +  +L  L  AG+  +  G 
Sbjct: 1   MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L RPA++I +LDV +A E++   +    +    C + G+    L   L +A +A 
Sbjct: 61  GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEKCAVGGNILEALAPTLVRARSAL 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D L + ++  +    + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141


>gi|224541787|ref|ZP_03682326.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525284|gb|EEF94389.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
           15897]
          Length = 140

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +T      +  L+Y   + D      ++A+  C   + + +++  L +AG+++   G  
Sbjct: 5   RMTSDFSIAVHALVYLGKNQD-LISSDELAKHICTHPVRVRRVMIKLREAGLIKAKAGVD 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNAF 118
           GG RL + AD IT+ ++ K+    +              +  S     + S+      A 
Sbjct: 64  GGYRLDKEADDITLSEIAKSVSNDYIHVTWHNGEDGREAIKDSKVEQAIDSIFVDLNEAC 123

Query: 119 FDVLTQYSIECLVR 132
            ++L   +IE ++ 
Sbjct: 124 DNLLKNKTIEDIMN 137


>gi|299537227|ref|ZP_07050530.1| YwnA [Lysinibacillus fusiformis ZC1]
 gi|298727468|gb|EFI68040.1| YwnA [Lysinibacillus fusiformis ZC1]
          Length = 137

 Score = 77.3 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  R    I +L   A  +D     S  IA +   + + + +++  L KAG++ +  G  
Sbjct: 2   VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLSSHSG-M 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
            G  L      +T+L + +A +    +          C +       L  V      A  
Sbjct: 61  AGYELLVEPKDLTLLAIYQAIDGPEQLFAIHDEPNPACAVGQKIQHTLEGVYTSVWLAMK 120

Query: 120 DVLTQYSIECLVRN 133
           + L   +++ ++  
Sbjct: 121 EQLQAQTLQDVLDQ 134


>gi|315281000|ref|ZP_07869741.1| transcription regulator [Listeria marthii FSL S4-120]
 gi|313615357|gb|EFR88761.1| transcription regulator [Listeria marthii FSL S4-120]
          Length = 161

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 6/142 (4%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  I +L Y  I  N        IA +   +   + +I+  L KA ++ T  
Sbjct: 7   MKYSIQFSD-AIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKADLITTQT 65

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
           G+     L RP ++I++LDV K+ E +  +         DC +  +    LTS       
Sbjct: 66  GKA-NPILARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQK 124

Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
                + Q  ++ +V + S ++
Sbjct: 125 KLELEMEQIKLDSIVHDISVLE 146


>gi|239626598|ref|ZP_04669629.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516744|gb|EEQ56610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 144

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++   H         +AE  C +   + K++  L KA +V+T  G  G
Sbjct: 1   MTSEFTIAVHALVFL-NHKAQVYSSEGLAENVCTNAARIRKVMAKLKKADLVKTKEGVDG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF--- 118
           G    R + +I++  V +A +  F           + C +    G+  V+ +        
Sbjct: 60  GYLFHRDSREISLSMVAEALDTPFVTVSWKSGDPHMSCMIAS--GMAGVMDELYGDLDRC 117

Query: 119 -FDVLTQYSIECL 130
             + L+  +I  L
Sbjct: 118 CRERLSHVTIADL 130


>gi|241764639|ref|ZP_04762653.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
 gi|241365910|gb|EER60547.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
           2AN]
          Length = 147

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   D P     IA+    + + + + +  L +AGIV + RG  GG R+    
Sbjct: 11  LHALLHMAEQ-DGPVTSETIAQCLGTNPVVVRRTMGYLREAGIVTSDRGHAGGWRIHADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +  S    L     +A        ++ ++ 
Sbjct: 70  RTVTLRQLHEALGEPAMFAIGNRNEAPECLVEQSVNAALEGTFAEAEALLLKRFSEITLA 129

Query: 129 CL 130
            L
Sbjct: 130 DL 131


>gi|126650263|ref|ZP_01722491.1| YwnA [Bacillus sp. B14905]
 gi|126592913|gb|EAZ86895.1| YwnA [Bacillus sp. B14905]
          Length = 130

 Score = 76.9 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            I +L   A  +D     S  IA +   + + + +++  L KAG++ +  G  G   L  
Sbjct: 2   AIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGVAG-YELLV 60

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
               +T+L + +A +    +          C +       L  V      A    L   +
Sbjct: 61  EPKNLTLLAIYQAIDGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAMEAQLQAQT 120

Query: 127 IECLVRN 133
           ++ ++  
Sbjct: 121 LQDVLDQ 127


>gi|238855677|ref|ZP_04645976.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii
           269-3]
 gi|260664938|ref|ZP_05865789.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|282933382|ref|ZP_06338763.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
           208-1]
 gi|313472516|ref|ZP_07813006.1| Rrf2 family protein [Lactobacillus jensenii 1153]
 gi|238831699|gb|EEQ24037.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii
           269-3]
 gi|239529949|gb|EEQ68950.1| Rrf2 family protein [Lactobacillus jensenii 1153]
 gi|260561421|gb|EEX27394.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|281302486|gb|EFA94707.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
           208-1]
          Length = 143

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I  +       IA +   +   + +++  L  A ++ET +G+
Sbjct: 1   MKYSYKFSDAIHLLSYLEIFKNEDLSSRAIAASIESNPSIIRQLMSDLRSAVLIETRQGK 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAF 118
               RL R    IT+ D+  A +    +        ++C +  +   + V    +  N+ 
Sbjct: 61  A-SARLIRKPSDITLFDIYMAIDIDHELLHVDPKTNLNCSVGRNVQTSLVGFYEEIQNSA 119

Query: 119 FDVLTQYSIECLVRN 133
           F+ + + +++ ++ +
Sbjct: 120 FEQMKKITLQDVISD 134


>gi|221369698|ref|YP_002520794.1| hypothetical protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
 gi|221162750|gb|ACM03721.1| Hypothetical Protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
          Length = 142

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++ A   D P    QIA     + + + +I+  L   G V+  RG  
Sbjct: 6   RLSRL----LHVLLHMA-QTDAPMTSQQIAGMLGSNPVVVRRIMAGLRDGGYVDAERGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           GG R+ R   +IT+LDV ++       A  F++ +  C +  S
Sbjct: 61  GGWRIIRRTTEITVLDVYRSLGSPDLFAFGFSNPRPSCLVEQS 103


>gi|167836110|ref|ZP_02462993.1| putative transcriptional regulator [Burkholderia thailandensis
           MSMB43]
          Length = 153

 Score = 76.9 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R    IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPSCITLLDVCRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLADVTAD 135


>gi|167761548|ref|ZP_02433675.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704]
 gi|167661214|gb|EDS05344.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704]
          Length = 142

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  +T      +  L+Y   H +      ++AE  C +   + K++  L K  ++ T  G
Sbjct: 1   MREMTSEFAIAVHALVYL-HHKNAVLSSEELAENICTNSARVRKVMAKLKKKELIGTKEG 59

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +GG  +   A +IT+ D+ +A +      +   +      +   C + S +   ++  +
Sbjct: 60  IKGGYHMSLDASEITLGDICEALQ-----VDIVKAAWRSGSMDMDCMIASGMAGVMDGIY 114

Query: 120 DVLTQ--------YSIECLVRNRSSIKK 139
             L +         +I+ + +  +  KK
Sbjct: 115 AELDEICKKRLKGITIQDVEKKVAGCKK 142


>gi|27383085|ref|NP_774614.1| hypothetical protein blr7974 [Bradyrhizobium japonicum USDA 110]
 gi|27356259|dbj|BAC53239.1| blr7974 [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 76.9 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A     P     +A+A   + + + +I+  L   G V + +G  GG  L    
Sbjct: 11  LHVLLHMAQQPG-PFTSETLAKAMDTNPVVIRRIMAGLRDLGYVRSEKGHGGGWTLACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            ++T+ DV  A      +A    +    C +  +    L    + A       L   ++ 
Sbjct: 70  SKVTLRDVYTALGNPPLLAMGNRTEAPGCLVEQAVNAALDRTFQDAEALLLSRLGAVTLA 129

Query: 129 CLVRNRSSIKKIFNA 143
            L  +   ++K   A
Sbjct: 130 MLGDD---LRKRLGA 141


>gi|15891278|ref|NP_356950.1| hypothetical protein Atu3666 [Agrobacterium tumefaciens str. C58]
 gi|15159653|gb|AAK89735.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 152

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+LT+ ++  I +L       +  +   ++A    +++    +++  LV+ G++++ RGR
Sbjct: 1   MYLTRESEIAIGILTNFVHEAEEAHTTGKLAHRLGVTKDHAARVVAILVRNGLLQSRRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            GGV L    + +++  +++AT+    V      +       G+ G+  +L +A + +F 
Sbjct: 61  TGGVVLNVDPESLSVGMILRATQ-PVLVRRPRTRNANP---SGTTGVFHMLAEATSDYFI 116

Query: 121 VL-TQYSIECLV 131
            L     I  +V
Sbjct: 117 ELADSCKIADVV 128


>gi|295097954|emb|CBK87044.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 148

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A  +   +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA++IT
Sbjct: 5   VAMAEQSGERSTSAILAYGLEANPSFIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEIT 64

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVR 132
           + D+  +  E   +          C +   +C    S+  +A  A   VL ++++   + 
Sbjct: 65  LRDIYLSVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLAVLARHTVASALE 124

Query: 133 N 133
            
Sbjct: 125 E 125


>gi|296115500|ref|ZP_06834133.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977983|gb|EFG84728.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 150

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A     P     +A A   + + + +++  L + G V + +G  GG  L    
Sbjct: 11  LHVLLHMA-EAGGPMTSEALARALNTNPVVVRRLMGGLREHGYVHSEKGHGGGWTLSCQL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           D++T+ D+ +A +     A    S K +C +  +    ++ VL            Q ++ 
Sbjct: 70  DRVTLRDIYEALDAPRLFAIGNRSEKTECLVEEAVNDAMSGVLADVTAQLLARFGQITLA 129

Query: 129 CL 130
            L
Sbjct: 130 AL 131


>gi|296117178|ref|ZP_06835771.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976273|gb|EFG83058.1| transcriptional regulator, BadM/Rrf2 family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 151

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 10  GIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            I +++  A H         ++IA+   ++   +  +LQ L ++G++  VRG  GG RL 
Sbjct: 11  AIFIMLDIAFHGMHGNTVSATEIAQRSGMARRGIEPLLQVLSRSGLLSGVRGPHGGYRLG 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
            PA +I + D+ +A      +A      + + PL  +  +   L +          + ++
Sbjct: 71  HPAREILLSDIHQAI-----MARHDRMERRNGPLFNT-VIRPFLNQMEGMLEREYRKVTL 124

Query: 128 ECLVRNRSS 136
           + LVR   +
Sbjct: 125 DELVRQAEN 133


>gi|226197582|ref|ZP_03793157.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9]
 gi|225930191|gb|EEH26203.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9]
          Length = 141

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L++   H +       IA+    + + + +++  L   G V + +G  GG  L    D 
Sbjct: 1   MLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHGGGWELVCDLDA 59

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECL 130
           IT+LDV +A  E    +    + + DC +  +    +T  L +A           ++  L
Sbjct: 60  ITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLLAHFGAITVGDL 119

Query: 131 VRN 133
            R+
Sbjct: 120 ARD 122


>gi|167565612|ref|ZP_02358528.1| Transcriptional regulator family protein [Burkholderia oklahomensis
           EO147]
          Length = 153

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  +    +    + + DC +  +    +   L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLTRD 134


>gi|167572719|ref|ZP_02365593.1| Transcriptional regulator family protein [Burkholderia oklahomensis
           C6786]
          Length = 153

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D IT+LDV +A  +    +    + + DC +  +    +   L +A     
Sbjct: 61  GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLTRD 134


>gi|325124883|gb|ADY84213.1| Transcription regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 142

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    + +L Y  I  D       IA +   +   +  ++  L KAG ++T +G 
Sbjct: 1   MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQG- 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
                L +  ++I++ D+  A      +       +  CP+ G+    L     +   A 
Sbjct: 60  SAEPELAKKPEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119

Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
           F  + + S+  +V       ++
Sbjct: 120 FAKMREISLREIVDQIKEEGQL 141


>gi|23336286|ref|ZP_00121509.1| COG1959: Predicted transcriptional regulator [Bifidobacterium
           longum DJO10A]
 gi|189440615|ref|YP_001955696.1| putative transcriptional regulator [Bifidobacterium longum DJO10A]
 gi|189429050|gb|ACD99198.1| Putative transcriptional regulator [Bifidobacterium longum DJO10A]
          Length = 140

 Score = 76.5 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 10  GIRVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +  L+Y    A H         +AE  C +   + K+++PL  AG++ T  G  GG  L
Sbjct: 8   AVHALVYLDYRATH----LPSQILAENICTNAARVRKVMRPLASAGLIATKEGTEGGYAL 63

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            RPA +IT+  V +AT  +F              +   C ++S +   ++  +  L +  
Sbjct: 64  ARPAAEITLRAVAEATGTTFVKVNWTPGD-----VHEDCLVSSSMGAVMDDIYAGLNRTC 118

Query: 127 IECL 130
           +E L
Sbjct: 119 LEQL 122


>gi|149177505|ref|ZP_01856108.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797]
 gi|148843655|gb|EDL58015.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797]
          Length = 136

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 3/119 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A H   P     ++E    + + + + +  L K G V++ +G  GG  L      +T+ 
Sbjct: 1   MAEHPG-PVTSKDLSEMMVTNPVVIRQTMAGLRKQGYVKSEKGHGGGWTLACDPSTVTLQ 59

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           D+  A      +A    +    C +  +    L     +A         + ++  L+  
Sbjct: 60  DIYAALGSPSLLAISNRTESPGCLVEQAVNSTLQQTFNEAEELLLSRFGEITLAMLIAE 118


>gi|291457248|ref|ZP_06596638.1| transcriptional regulator family protein [Bifidobacterium breve DSM
           20213]
 gi|291381083|gb|EFE88601.1| transcriptional regulator family protein [Bifidobacterium breve DSM
           20213]
          Length = 135

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L+Y   H +       +AE  C +   + K+++PL  AG+  T  G  GG  L +PA
Sbjct: 1   MHALVYL-DHRNTHLPSQILAENICTNAARVRKVMRPLAAAGLAATKEGAEGGYALAQPA 59

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
             IT+  V +AT  +F       ++     +   C ++S +   ++  +D L +  +E L
Sbjct: 60  ADITLSTVAEATGTTF-----VDANWKPGDIHEECLVSSSMGAVMDGIYDGLNRTCLEQL 114

Query: 131 VR 132
             
Sbjct: 115 AH 116


>gi|225386837|ref|ZP_03756601.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
           DSM 15981]
 gi|225047063|gb|EEG57309.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
           DSM 15981]
          Length = 142

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 7   TDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +DY   +  L+Y   H        ++AE  C +   + K++  L KAG V+T  G  GG 
Sbjct: 3   SDYCVAVHALVYL-NHKAKVLSSEELAENICTNPARVRKVMAKLKKAGFVKTKEGSEGGY 61

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
              + ADQ+T+  + +A E  F      +           C + S +   ++  FD L +
Sbjct: 62  LFDQDADQVTLDQIAQALEIRFVDTAWKSGDTDM-----KCLVASGMAGLMDEIFDDLNE 116


>gi|83717641|ref|YP_439674.1| transcriptional regulator family protein [Burkholderia
           thailandensis E264]
 gi|83651466|gb|ABC35530.1| Transcriptional regulator family [Burkholderia thailandensis E264]
          Length = 172

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 25  RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D +T+LDV +A  +    +    + + DC +  +    +   L +A     
Sbjct: 80  GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 139

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 140 ARFGAITVGDLARD 153


>gi|225019902|ref|ZP_03709094.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum
           DSM 5476]
 gi|224947266|gb|EEG28475.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum
           DSM 5476]
          Length = 167

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 3   LTKRTD--------YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +T + D          +  L++   H         +A+  C +   + K++  L K G+V
Sbjct: 21  ITVKGDELMTGEFAVAVHALVFL-NHKQKTVSSETLADNVCTNPARIRKVMAKLKKHGLV 79

Query: 55  ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
           +T  G  GG +      ++T+  V +A           +S      L   C ++S + + 
Sbjct: 80  QTKEGADGGYQFVLNPREVTLAQVCEAVGNRL-----VSSSWRSGDLDKKCLISSGMGEI 134

Query: 115 LNAFFDVLTQY--------SIECL 130
           +N  ++ L           +I+ +
Sbjct: 135 MNGIYEQLNDVCMQKLQTMTIQDI 158


>gi|78065784|ref|YP_368553.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
 gi|77966529|gb|ABB07909.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
          Length = 151

 Score = 76.1 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 2/141 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
            GG  L R    IT+LDV +A +++   A    +    C +       L   +  A  A 
Sbjct: 61  GGGALLAREPGAITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGALIDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
              L   ++  +  +  ++++
Sbjct: 121 EASLGTRTLADVTADVLNLEQ 141


>gi|169828207|ref|YP_001698365.1| YwnA [Lysinibacillus sphaericus C3-41]
 gi|168992695|gb|ACA40235.1| YwnA [Lysinibacillus sphaericus C3-41]
          Length = 137

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 4/134 (2%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  R    I +L   A  +D     S  IA +   + + + +++  L KAG++ +  G  
Sbjct: 2   VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGVA 61

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
           G   L      +T+L + +A      +          C +       L  V      A  
Sbjct: 62  G-YELLVEPKNLTLLAIYQAINGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAME 120

Query: 120 DVLTQYSIECLVRN 133
             L   +++ ++  
Sbjct: 121 AQLHAQTLQDVLDQ 134


>gi|116512690|ref|YP_811597.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116108344|gb|ABJ73484.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 154

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K  +  + VL+  A   D    +   +++   +S+  L K+L+ LV   ++E+   
Sbjct: 1   MKLSKHLEEAVYVLLILATQKDQQALKSKTLSKLLEVSDSSLKKVLRQLVVNNLIESTAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113
           + GG +L +  ++I++ DV+ A E   F++   +             L     +   L K
Sbjct: 61  KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           A N +   L +  +  L+   +   K  +
Sbjct: 121 AQNLYALELEKLKLSDLLLAEAMDNKTLD 149


>gi|315497061|ref|YP_004085865.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
           excentricus CB 48]
 gi|315415073|gb|ADU11714.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
           excentricus CB 48]
          Length = 139

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 19/145 (13%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  ++R       L Y A       +     S +A +   + + + ++   L KAG+V+T
Sbjct: 1   MSDSQRFPVAAHTLAYLAHKGAYSREQAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVDT 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
             G  GG  L +PA+ I +  V+ A         C        P    C +   + KA++
Sbjct: 61  CSGVSGGTWLLKPAETIPLDQVLHAVHG------CAHLGSAP-PGADGCPVGQAIPKAVS 113

Query: 117 --------AFFDVLTQYSIECLVRN 133
                   A  + L++ ++  L+RN
Sbjct: 114 GAMKAANAAATETLSKITVADLIRN 138


>gi|254421022|ref|ZP_05034746.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
 gi|196187199|gb|EDX82175.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
          Length = 162

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 23/150 (15%)

Query: 11  IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +  L++ A H      P    Q+A     + + + + +  L + G+V + +G  GG RL 
Sbjct: 11  LHALLHMAEHEARTGAPMTSDQLAVCLSTNPVVVRRTMAGLREQGLVASEKGHGGGWRLA 70

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF-------- 119
           RP DQ+T+  V  A  E           +        C + + +  AL   +        
Sbjct: 71  RPLDQVTLGQVNTALGEPGLF------PEAPPVEADGCLVEAAVNDALAGTYAAARALLV 124

Query: 120 DVLTQYSIECLVRN------RSSIKKIFNA 143
             L + ++  L  +          + + NA
Sbjct: 125 ARLNEITLADLAADFARRMAEHPKRDLLNA 154


>gi|118586565|ref|ZP_01544007.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433006|gb|EAV39730.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC
           BAA-1163]
          Length = 146

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 4   TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           T+ +D    +L+Y A+H N    + S+IA +   +   + +I+  L KA ++  V+G   
Sbjct: 4   TQLSD-ATHILVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSP- 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
              L + A+QIT+ ++  A  +   +     +  + CP+  +    L    R+   A   
Sbjct: 62  QPVLAKAAEQITLQEIYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + + +++ ++ +    +K F++
Sbjct: 122 KMAEITLQDIINDTKVQEKQFDS 144


>gi|77745399|gb|ABB02600.1| putative transcriptional regulator [Lactobacillus reuteri]
          Length = 125

 Score = 76.1 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
             + IA     S + + +++  L KAG++ TV G      L +  + I++ DV  A E  
Sbjct: 1   TSNNIASTIETSPVVVRRLMSALNKAGLINTVHGAA-DPALAKSPENISLYDVFLAIEGD 59

Query: 86  FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
             +          C + G+    L    ++A  A    L + S++ ++      + + +A
Sbjct: 60  AHLFTIDERTNPQCIVGGNIQETLDGFYQQAETAAKAKLARISLQDVIDTIRVKQALKDA 119


>gi|119384163|ref|YP_915219.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119373930|gb|ABL69523.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 156

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++   H        QIA+    + + + +++  L + GIV + +G  GG +L  P 
Sbjct: 11  LHVLIHMDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGHGGGWQLACPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            +I++ DV +A            +    C +  +    L + L +A           ++E
Sbjct: 70  AEISLRDVYEAVGHPPLFNIGPQADPSPCLVEQAVDARLDATLAEAETRLLAQFAAITVE 129

Query: 129 CLVRN 133
            + ++
Sbjct: 130 EVAQD 134


>gi|229826985|ref|ZP_04453054.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC
           49176]
 gi|229788603|gb|EEP24717.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC
           49176]
          Length = 146

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 28/149 (18%)

Query: 1   MHLTKRT----------DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
           MH+T +           DY           +      + +A +   + + +  ++  L +
Sbjct: 1   MHITSKFTIAAHIIAAIDY---------FKDSEKVTSNFLAGSVGANPVIVRNVMGNLKE 51

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT 108
           AGI+   +G+ G + L +  D+IT  DV KA +  +   +     +  I+CP+  +  + 
Sbjct: 52  AGIIAISQGKSG-ISLAKELDEITFYDVYKAVDCVDDEGLFHFHENPNINCPVGRN--IH 108

Query: 109 SVL----RKALNAFFDVLTQYSIECLVRN 133
           S +    ++  +   + L+  ++  +V +
Sbjct: 109 SAMDEKLQRVQSIMENELSCITMADVVAD 137


>gi|167616242|ref|ZP_02384877.1| Transcriptional regulator family protein [Burkholderia
           thailandensis Bt4]
 gi|257142813|ref|ZP_05591075.1| transcriptional regulator family protein [Burkholderia
           thailandensis E264]
          Length = 153

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L++     + VL++   H +       IA+    + + + +++  L   G V + +G  
Sbjct: 6   RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFF 119
           GG  L    D +T+LDV +A  +    +    + + DC +  +    +   L +A     
Sbjct: 61  GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 120

Query: 120 DVLTQYSIECLVRN 133
                 ++  L R+
Sbjct: 121 ARFGAITVGDLARD 134


>gi|229184988|ref|ZP_04312178.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
 gi|228598463|gb|EEK56093.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
          Length = 85

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           + K G++ +  G +GG  L    + I+ LD++ A E    + EC    K        C +
Sbjct: 1   MTKEGMIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLI 54

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
              +  A     + L    I  L + 
Sbjct: 55  NEAMLAAEEKMEEELRNQKIVDLAKK 80


>gi|206560912|ref|YP_002231677.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
 gi|198036954|emb|CAR52866.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
          Length = 177

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   D P     +A     + + + + +  L +AGIV + RG  GG R+    
Sbjct: 39  LHALLHMAEQ-DGPVTSETLALCLGTNPVVVRRTMGYLRQAGIVTSERGHSGGWRIHADL 97

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +    +  L     +A        ++ ++ 
Sbjct: 98  GSVTLRQLHEALGEPATFAIGNRNETPECLVEQTVNAALEGTFAEAEALLLKRFSEITLA 157

Query: 129 CLVRN 133
            L  +
Sbjct: 158 DLASD 162


>gi|167587582|ref|ZP_02379970.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
           ubonensis Bu]
          Length = 151

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   ++    P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
            GG  L R    IT+LDV +A +++   A    +    C +       LT  +  A  A 
Sbjct: 61  GGGALLAREPGSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120

Query: 119 FDVLTQYSIECLVRN 133
              L   ++  +  +
Sbjct: 121 EASLATRTLTDVTAD 135


>gi|94313254|ref|YP_586463.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357106|gb|ABF11194.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
           metallidurans CH34]
          Length = 147

 Score = 75.8 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M   T+     + VL++  +          IA     + + + + +  L  AG V++  G
Sbjct: 1   MRFDTRLARL-LHVLVHMHLRGGS-TTSENIALMLHTNPVVVRRTMAALRDAGYVQSTGG 58

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
           R GG  L R  +  T+ DV  A   +   A   A     CP+  +    +   L  A   
Sbjct: 59  RGGGWDLARDLEDFTVKDVYVAIAHTALFALGPADDNPACPVEAAVNRHINEALSSAEMT 118

Query: 118 FFDVLTQYSIECLVRNRSS 136
                 +  +  + R+ +S
Sbjct: 119 MLRFFGEKRLAEIARDATS 137


>gi|310642195|ref|YP_003946953.1| transcriptional regulator, badm/rrf2 family [Paenibacillus polymyxa
           SC2]
 gi|309247145|gb|ADO56712.1| Transcriptional regulator, BadM/Rrf2 family [Paenibacillus polymyxa
           SC2]
          Length = 149

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 10  GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            ++ L+  +  +        ++A+        L +IL  L K G++ T  GR GG  L +
Sbjct: 18  AVQALVILSQEDKSIACPSIELAKYLQSEPSLLRRILSVLAKEGLIGTREGRDGGYHLRK 77

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQY 125
           PA+ I ++DV         ++          PL G C    L  + ++  ++   VL++Y
Sbjct: 78  PAESIRLVDVYDVFRSDSRLSFGITETAGTHPL-GKCMKSTLEDITQEMDDSIRGVLSKY 136

Query: 126 SIECLVRN 133
           +I  L   
Sbjct: 137 TIADLANQ 144


>gi|299135050|ref|ZP_07028241.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
 gi|298590027|gb|EFI50231.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
          Length = 147

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++   H + P     +A+    + + + + +  L KAGIV + RG  GG  +    
Sbjct: 11  LHALLHMIGHGE-PMTSEALAQCMDTNPVVVRRTMGLLRKAGIVTSARGHSGGWHIRADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             IT+ D+     E    A    + + +C +  +    L    R+      +   + ++ 
Sbjct: 70  GSITLRDLHHVLGEPAIFAIGNRNPEPECLVEQAVNAALDGAFRETEALLLERFAEVTLA 129

Query: 129 CLVRN 133
            LV +
Sbjct: 130 DLVAD 134


>gi|317053397|ref|YP_004119164.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
 gi|316953136|gb|ADU72608.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 140

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A  +       Q+AE    +   + + +  L +AG V + +G  GG  L    
Sbjct: 11  LHVLVHLACDSGN-YTSQQLAEMLDTNAALVRRTMAGLREAGYVRSEKGHNGGWSLSCDP 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128
            Q+T+LD+ KA   +             C +  +    L   L++A +   + L + ++ 
Sbjct: 70  AQVTLLDIYKAVGITHLYNLGINRDNPHCLIENAVNDELDGALKQAESLLMNRLNEITLS 129

Query: 129 CLVRN 133
            L   
Sbjct: 130 HLCNK 134


>gi|153814006|ref|ZP_01966674.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756]
 gi|145848402|gb|EDK25320.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756]
          Length = 86

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           + K+G++E  RG +GG +L +   + T+ DVV A E  F V EC     I       C +
Sbjct: 1   MNKSGLIEIRRGPKGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAV 60

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
              L    ++   +L + ++  +++ 
Sbjct: 61  HRELLGIQHSVEKLLKKKTMADILKK 86


>gi|313899650|ref|ZP_07833153.1| transcriptional regulator [Clostridium sp. HGF2]
 gi|312955265|gb|EFR36930.1| transcriptional regulator [Clostridium sp. HGF2]
          Length = 145

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L Y   H +      ++A++ C +   + K++  L KAG++ET  G  GG  L   
Sbjct: 8   ALHALAYL-RHRNTKVSSEELAKSICTNPARIRKVMAKLKKAGLLETREGNSGGYELHGD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF--------FDV 121
           A  I + D+ +A ++         S      L   C + + +   ++             
Sbjct: 67  AAAIRLSDLAQALQQPLT-----KSGWRSGTLNTYCMIATGMGTVVDTLEASLNEVCMQS 121

Query: 122 LTQYSIECLVRN 133
           L+Q +IE + + 
Sbjct: 122 LSQITIEDISQQ 133


>gi|309777458|ref|ZP_07672413.1| transcriptional regulator superfamily [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914772|gb|EFP60557.1| transcriptional regulator superfamily [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 150

 Score = 75.4 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L Y   H        ++A++ C +   + K++  L KAG++ T  G  GG  L  P
Sbjct: 12  ALHALAYL-DHRRTKVSSEELAKSICTNPARIRKVMAKLKKAGLLITREGNSGGYELSAP 70

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124
           A  I + D+ +A ++         S      L   C + + +   ++     L +     
Sbjct: 71  ASAIRLSDLAQALQQPL-----LKSGWRSGTLNTYCMIATGMGSVVDTLEASLNEECLRH 125

Query: 125 ---YSIECLVRN 133
               +IE + R 
Sbjct: 126 LSHITIEDISRQ 137


>gi|315647630|ref|ZP_07900732.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
 gi|315277069|gb|EFU40410.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
           vortex V453]
          Length = 152

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+    H+        IA    +    + +IL+ L  A ++E+  GR GG RL + 
Sbjct: 26  AVQALVALERHSGK-CSSGDIASYLHLESTLIRRILKTLAHADMIESREGRDGGYRLKKN 84

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122
           A  IT+ +V    +    +++            G C           +L +   +   +L
Sbjct: 85  ASDITLAEVYSILQVHNSISDGMLDAT-----TGHCFAAEIRESFAGILSEIEESTLKIL 139

Query: 123 TQYSIECLVRN 133
              +I  +V  
Sbjct: 140 ESRTIADMVEQ 150


>gi|315182618|gb|ADT89531.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC
           11218]
          Length = 124

 Score = 75.4 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
            P    Q A     + + + + +  L  AG V + +G+ GG  L     ++T+LD+ +A 
Sbjct: 6   QPMTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQAV 65

Query: 83  EESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            E    +  F +   +C +  +    L  VL +A        +Q S+  L + 
Sbjct: 66  GEPKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 118


>gi|322835180|ref|YP_004215206.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170381|gb|ADW76079.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
          Length = 161

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           +         + +A     +  F+ K++ PL + GI+ +  GR G + L RPA++IT+ D
Sbjct: 19  SQKAGQRCTSAILATGLEANSSFIRKLMVPLTQHGIIVSTLGRTGSITLGRPAEEITLRD 78

Query: 78  VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIEC 129
           +  A  E   +          C +   +C    +++ +A  A F VL ++++  
Sbjct: 79  IYCAVIEDKRLWAARPDVPARCVVSANACTYFKNIVSEAEEASFQVLARHTVAD 132


>gi|125624777|ref|YP_001033260.1| hypothetical protein llmg_2002 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493585|emb|CAL98570.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071577|gb|ADJ60977.1| hypothetical protein LLNZ_10320 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 154

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M L+K  +  + VL+  A   D    +   ++    +S+  L K+L+ LV   ++E+   
Sbjct: 1   MKLSKHLEEAVYVLLILATQKDQQALKSKTLSNLLEVSDSSLKKVLRQLVVNNLIESTAS 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113
           + GG +L +  ++I++ DV+ A E   F++   +             L     +   L K
Sbjct: 61  KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120

Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
           A N +   L +  +  L+   +   K  +
Sbjct: 121 AQNLYALELEKLKLSDLLLAEAMDNKTLD 149


>gi|225569272|ref|ZP_03778297.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
           15053]
 gi|225571816|ref|ZP_03780686.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
           15053]
 gi|225159528|gb|EEG72147.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
           15053]
 gi|225162071|gb|EEG74690.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
           15053]
          Length = 143

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L+Y   H D      ++AE  C +   + K++  L K  +V T  G +G
Sbjct: 1   MTSEFAIAVHALVYL-RHKDTVVSSEELAENICTNPARVRKVMAKLKKKALVGTKEGIKG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF-- 119
           G  +   A  +T+  V  A EE    A   +    +DC +    G+  ++    +     
Sbjct: 60  GYHMAADASAVTLRCVCDALEEEVIKASWKSGSIDMDCMIAS--GMAGMMDGIYSEMNAQ 117

Query: 120 --DVLTQYSIECL 130
             D L   +IE +
Sbjct: 118 CKDYLETVTIEDV 130


>gi|146311547|ref|YP_001176621.1| BadM/Rrf2 family transcriptional regulator [Enterobacter sp. 638]
 gi|145318423|gb|ABP60570.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
          Length = 159

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 8   DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     +++++    A  +   +  + +A     +  F+ K++ PL + GI+ +  GR 
Sbjct: 3   DYRFPTALQMVLSVAMAEQSGERSTSTILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119
           G + L RPAD+IT+ D+  +  E   +          C +   +C    S+  +A  A  
Sbjct: 63  GSIHLGRPADKITLRDIYISVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASL 122

Query: 120 DVLTQYSIECLVRN 133
           +VL ++++   +  
Sbjct: 123 EVLARHTVASALEE 136


>gi|65320070|ref|ZP_00393029.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
           str. A2012]
          Length = 85

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           + K G + +  G +GG  L    + I+ LD++ A E    + EC    K        C +
Sbjct: 1   MTKEGXIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPG------CLI 54

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
              +  A     + L    I  L + 
Sbjct: 55  NEAMLAAEEKMEEELRNQKIVDLAKK 80


>gi|154244034|ref|YP_001414992.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154158119|gb|ABS65335.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
           autotrophicus Py2]
          Length = 146

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 33  ACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
              +    L  +LQ LV AG+++ VRG RGG  L R   ++++ ++V+  E +    E  
Sbjct: 35  RHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVEGAEEEKEII 94

Query: 93  ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
                  PLV    +   +  A + F   L   ++E L R+   
Sbjct: 95  LP-----PLVTE-VVQPAVAAAEDTFDTALDAVTLEDLCRSADG 132


>gi|260427698|ref|ZP_05781677.1| transcriptional regulator [Citreicella sp. SE45]
 gi|260422190|gb|EEX15441.1| transcriptional regulator [Citreicella sp. SE45]
          Length = 156

 Score = 75.0 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++   H        QIA+    + + + +++  L + GIV + +G  GG +L  P 
Sbjct: 11  LHVLIHLDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGHGGGWQLACPL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            +I++ DV +A            +    C +  +    L + L +A           ++E
Sbjct: 70  AEISLRDVYEAVGHPPLFNIGPQADPSSCLVEQAVDARLDATLAEAEARLLTQFAAITVE 129

Query: 129 CLVRN 133
            + ++
Sbjct: 130 EVAQD 134


>gi|254460863|ref|ZP_05074279.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
           bacterium HTCC2083]
 gi|206677452|gb|EDZ41939.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 114

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 40  FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKID 98
           +L ++   + +  +V + RG  GG +L R A  I+I +++ A +E+   ++        D
Sbjct: 3   YLEQLFSKIRRNDLVVSTRGHGGGYKLARDASAISIEEILLAVDENIDALSTGAGMKGGD 62

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           C  +       +           L + ++  ++ +
Sbjct: 63  CGSIEQVLSNKMWESLSAQVHLYLHRTTLADVIDD 97


>gi|256004457|ref|ZP_05429437.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
 gi|255991598|gb|EEU01700.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
          thermocellum DSM 2360]
          Length = 65

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +  Y +  ++  A   +N     +  I+E   IS++FL ++   L KA IV + +
Sbjct: 1  MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60

Query: 59 GRRGG 63
          G +GG
Sbjct: 61 GAQGG 65


>gi|300773744|ref|ZP_07083613.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759915|gb|EFK56742.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 138

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              ++    +  D       IA +  I+ + + K ++ L +A +V +  G+ GGVR+   
Sbjct: 10  ATHIIALLMLERDTWLSSDYIAGSININPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69

Query: 70  ADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            ++ T+ DV KAT   +E       + +   +CP+  +    LT V           L Q
Sbjct: 70  INKKTLADVYKATLASDEKGK----YNNPNPNCPVGKNINNYLTIVYNDIEEQHIAYLNQ 125

Query: 125 YSIECL 130
            SI+ L
Sbjct: 126 ISIQDL 131


>gi|160939845|ref|ZP_02087192.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437279|gb|EDP15044.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC
           BAA-613]
          Length = 145

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++   H         +A   C +   + K++  L KA +V+T  G  G
Sbjct: 1   MTSEFTIAVHALVFL-NHKGTVFSSEGLAANVCTNAARIRKVMAKLKKADLVKTKEGVDG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
           G    R +  + +  V +A +  F  A   + +        +C ++S +   ++  +   
Sbjct: 60  GYLFHRDSRDVNLSMVAEALDTPFVAASWKSGNPHM-----ACLISSGMAGIMDELYGEL 114

Query: 120 -----DVLTQYSIECL 130
                  L + +I  L
Sbjct: 115 NQCCQAYLEKVTIADL 130


>gi|225848837|ref|YP_002729001.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643212|gb|ACN98262.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 142

 Score = 74.6 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 11  IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           IR L+Y A++ D     + +I+EA  +   FL K +Q LVK GI+E+ RG +GG+   +P
Sbjct: 10  IRALIYLALNQDKEYISVKEISEALNLPFFFLAKNIQKLVKEGILESYRGPKGGISFKKP 69

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            ++I I+D++ A +      +C    + +C  +  C +             +    ++  
Sbjct: 70  INEIKIIDIIVAIDGDNLFKKCVLGFE-ECSDLNPCAIHHKWVPEREHLKGIFNA-TLYE 127

Query: 130 LVRN 133
           +V +
Sbjct: 128 IVND 131


>gi|225621369|ref|YP_002722627.1| Rrf2 family transcriptional regulator [Brachyspira hyodysenteriae
           WA1]
 gi|225216189|gb|ACN84923.1| Rrf2 family transcriptional regulator [Brachyspira hyodysenteriae
           WA1]
          Length = 146

 Score = 74.6 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 12/148 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +      +++  A   +     + +A++   +   + KIL  L  AGIVET +  
Sbjct: 1   MKINTKLSVAAHIVLCIAFFENEGTTSNLLAKSVRTNPSIIRKILLKLQDAGIVETNKK- 59

Query: 61  RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
             G +L +    IT+L + +A   EE   +   F      CP+   C +  VL +     
Sbjct: 60  --GSKLIKDEKDITLLSIYEAVFTEEERGLFN-FHEPNHICPVG--CAMFDVLGEEFNNV 114

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
              F   +++ +I+ +       KK  +
Sbjct: 115 RLDFEKSMSKITIKQIADEVRKRKKHLD 142


>gi|300871768|ref|YP_003786641.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli
           95/1000]
 gi|300689469|gb|ADK32140.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli
           95/1000]
          Length = 146

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +      +++  A   +     + IA++   +   + +IL  L  A IVET +  
Sbjct: 1   MKINTKLSVATHIVLCIAFFENEGTTSNLIAKSVKTNPAIIRRILLKLQDAEIVETTKK- 59

Query: 61  RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
             G +L +    IT+L + KA   EE   +   F      CP+   C +  VL +     
Sbjct: 60  --GSKLIKDEKDITLLSIYKAVFTEEERGLFN-FHHPNHVCPVG--CAMFDVLGEEFNNV 114

Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
              F   L++ +I+ +       KK  +
Sbjct: 115 REDFEKSLSKITIKKIADEVRKRKKHLD 142


>gi|315642364|ref|ZP_07896981.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
           15952]
 gi|325571763|ref|ZP_08147144.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
 gi|315482303|gb|EFU72855.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
           15952]
 gi|325155659|gb|EGC67860.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
           ATCC 12755]
          Length = 144

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   HN+       +AE  C + + + ++L    K G+V+T +G  GG  L   
Sbjct: 7   AVHGLVYLG-HNNSIFTSEALAENICTNPVRVRRVLAKCRKKGLVQTKKGVHGGYFLTDN 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124
            + IT+ +V +A +         + +     +   C ++S + +A++  +D L +     
Sbjct: 66  LEAITLKNVYEAIKIPIIQNTWHSGY-----INEQCMISSGMSEAMDDLYDELNKDAVAK 120

Query: 125 ---YSIECL 130
               +++ +
Sbjct: 121 LATITLKDM 129


>gi|296102479|ref|YP_003612625.1| putative transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056938|gb|ADF61676.1| putative transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 159

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 8   DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ +  GR 
Sbjct: 3   DYRFPTALQMVLSVAMAEQLGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFF 119
           G + L RP +QIT+ D+  +  E   +          C +  + C    S+  +A  A  
Sbjct: 63  GSIHLGRPPEQITLRDIYLSVIEDKKLWASRPDVPARCVVSANTCWYFKSIAEEAEQASL 122

Query: 120 DVLTQYSIECLVRN 133
            VL  +++   +  
Sbjct: 123 AVLAGHTVASALEE 136


>gi|227871937|ref|ZP_03990329.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268]
 gi|227842231|gb|EEJ52469.1| Rrf2 family transcriptional regulator [Oribacterium sinus F0268]
          Length = 118

 Score = 74.2 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE--S 85
            QIA +   +  ++ K+   L KAGI+E  +G  G  RL +PA +I++L++ K+  E   
Sbjct: 1   EQIANSVGTNASYIRKLTTRLSKAGIIEGRKGISG-FRLLKPAREISLLEIYKSIMEVKQ 59

Query: 86  FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIEC 129
             + +   +   +C +  S    L  + R         L   S+E 
Sbjct: 60  VHIFDIHQNPNDECIVGRSIKPTLEGMFRSMEKQMEAELAGMSLED 105


>gi|116334323|ref|YP_795850.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116099670|gb|ABJ64819.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
           ATCC 367]
          Length = 140

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVR 65
           I VL Y A   D       +A +   S   + KIL  L + G+V      T       V 
Sbjct: 10  IHVLTYIAYFKDQKITSQAMASSLQTSPSLVRKILANLKRGGLVCPGQATTH------VS 63

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLT 123
           L +PA +IT+ D+ +   +   +         DCP+  +    L     +   A  D + 
Sbjct: 64  LAKPAAEITMRDIYRTLPDRGPLLNVDTKTNEDCPVGAAVPVALNRYYAEIQAAAEDRMA 123

Query: 124 QYSIECLVRN 133
           + +++ ++ +
Sbjct: 124 RITLQDILAD 133


>gi|325519578|gb|EGC98937.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 105

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVL 122
           RL   + ++T+ +VV+ATE  F +  CFA+      C +   C L  VL  A +AFF  L
Sbjct: 2   RLFPASLRLTVGEVVRATEADFALVGCFAADAGSRGCVIEPQCRLKGVLAAARDAFFAEL 61

Query: 123 TQYSIECLVRNRSSIKKIFN 142
            ++++  L    SS+  +  
Sbjct: 62  DRHTLGELAAPASSLVSLLG 81


>gi|226322283|ref|ZP_03797801.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
 gi|225209313|gb|EEG91667.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
          Length = 152

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++    ++      ++A+  C + + + +++  L KAG++ET  G  G
Sbjct: 1   MTSEFAIAVHALVFL-DRSNATIASEELADNVCTNPVCIRRVMGKLKKAGLIETREGMGG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF---- 118
           G R+ +    IT+  +  A E +   A   + +     LV S G++ V+ + +       
Sbjct: 60  GYRIAKVNSDITLRQISDALENTLVKASWRSGNPDKKCLVAS-GMSVVMDELVTGMNRSC 118

Query: 119 FDVLTQYSIECLVRNRSSIKK 139
            D L + +I+ +    +++K+
Sbjct: 119 NDYLERITIQKVEERLTALKE 139


>gi|195940887|ref|ZP_03086269.1| BadM/Rrf2 family transcriptional regulator [Escherichia coli
           O157:H7 str. EC4024]
          Length = 130

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A  +   +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA++IT
Sbjct: 16  VAMAEQSGERSTSAILAYGLEANPSFIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEIT 75

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSI 127
           + D+  +  E   +          C +   +C    S+  +A  A   VL ++++
Sbjct: 76  LRDIYLSVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLAVLARHTV 130


>gi|313682246|ref|YP_004059984.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155106|gb|ADR33784.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
           DSM 16994]
          Length = 134

 Score = 74.2 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+ +  YG+  +   A        ++ +I+    IS  +L ++L  L +  +V ++RG  
Sbjct: 4   LSSKAIYGLAAMHVLAHAPRSRAMQVREISAMTQISHGYLEQLLSILRRNNLVSSIRGAS 63

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG +L R A +I ++++++A E  F+        KI+  +  S  L              
Sbjct: 64  GGYKLARLAHEIEVIEIIEALEGPFY--------KIEGNIGSSLILEYFWNDIEEKMR-T 114

Query: 122 LTQYSIECL 130
           L    +  L
Sbjct: 115 LFSMKLSEL 123


>gi|322373715|ref|ZP_08048251.1| putative Rrf2 family protein [Streptococcus sp. C150]
 gi|321278757|gb|EFX55826.1| putative Rrf2 family protein [Streptococcus sp. C150]
          Length = 145

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 11/142 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY----PNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  +      + +++Y +I           I  I+E   I    + +++  L K GI+ +
Sbjct: 1   MSYSAAFSQAVEIVLYLSIKQKEDKLKYLSIQVISEKLEIPIPSVKRLVSLLKKEGIISS 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-------TS 109
             G  GG+ + +  + IT+ D+ ++ E S      F           S  +         
Sbjct: 61  KTGIAGGLSIQKDVETITLFDIFQSIEGSKKPLFNFYDSFDLSQFENSSDVELYLNNFQE 120

Query: 110 VLRKALNAFFDVLTQYSIECLV 131
           +L  A +A    L   +I  L+
Sbjct: 121 ILTNAESAMVKELKSCTISDLL 142


>gi|326692599|ref|ZP_08229604.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773]
          Length = 141

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I+         IA +   +   +  ++  L  AG++ T +G 
Sbjct: 1   MRFSYKLSDAIHILAYIHINQTNDLSSKAIAASIGANASVVRSLMLDLRAAGLLTTRQGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +  + I++ D+  A   +  +         +C + G     L        +A 
Sbjct: 61  A-TPALAQLPEDISLYDIYMAINMTHQLLHIDPKTNPNCLVGGQIQATLNHFYTDIESAA 119

Query: 119 FDVLTQYSIECLVRN 133
           +  +   S+  ++ +
Sbjct: 120 YQKMQAISLADVISD 134


>gi|238896072|ref|YP_002920808.1| putative transcriptional regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548390|dbj|BAH64741.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 173

 Score = 73.8 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 4   TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           T   DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ + 
Sbjct: 13  TAMLDYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 72

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKAL 115
            GR G + L RPAD+IT+ D+  +  E   +          C +   +C    SV  +A 
Sbjct: 73  LGRNGSIHLGRPADKITLRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAE 132

Query: 116 NAFFDVLTQYSIE 128
            A  +VL ++++ 
Sbjct: 133 QASLNVLARHTVA 145


>gi|190576325|ref|YP_001974170.1| putative transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|190014247|emb|CAQ47891.1| putative transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
          Length = 138

 Score = 73.8 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           + +   H   P    Q+A       + + ++L  L KAG+V + RG  GG  L R A  I
Sbjct: 1   MAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVRSTRGHGGGSLLARDAAAI 59

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQYSIEC 129
           T+ D+  A      V          CP+     + S L    R+A       L   +++ 
Sbjct: 60  TLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEARLQATTLDQ 117

Query: 130 L 130
           L
Sbjct: 118 L 118


>gi|296127481|ref|YP_003634733.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
           DSM 12563]
 gi|296019297|gb|ADG72534.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
           DSM 12563]
          Length = 146

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +  +      +++  A   +     + +A++   +   + +IL  L  AGIV+T +  
Sbjct: 1   MKINTKLSIAAHIVLCIAFFENEGTTSNLLAKSVRTNPSVIRRILLKLQSAGIVKTDKK- 59

Query: 61  RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
             G RL +  + IT+L + +A   EE   +   F      CP+   C +  VL       
Sbjct: 60  --GSRLIKDEEDITLLSIYEAVFTEEERGLFN-FHEPNHVCPVG--CAMFDVLGDEFNNV 114

Query: 115 LNAFFDVLTQYS---IECLVRNRSS 136
              F   ++  +   I   VRNR  
Sbjct: 115 RLDFEKSMSNITIKKIADEVRNRKK 139


>gi|116490751|ref|YP_810295.1| BadM/Rrf2 family transcriptional regulator [Oenococcus oeni PSU-1]
 gi|290890174|ref|ZP_06553256.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429]
 gi|116091476|gb|ABJ56630.1| transcriptional regulator, BadM/Rrf2 family [Oenococcus oeni PSU-1]
 gi|290480218|gb|EFD88860.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429]
          Length = 146

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 4   TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           T+ +D    VL+Y A+H N    + S+IA +   +   + +I+  L KA ++  V+G   
Sbjct: 4   TQLSD-ATHVLVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSP- 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
              L + A+QIT+ +   A  +   +     +  + CP+  +    L    R+   A   
Sbjct: 62  QPVLAKAAEQITLQETYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121

Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
            + + +++ ++ +  + +K F++
Sbjct: 122 KMAEITLQDIINDTKAREKQFDS 144


>gi|300716621|ref|YP_003741424.1| transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
 gi|299062457|emb|CAX59574.1| Transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
          Length = 160

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            +++++  A        +    +A     +  F+ K++ PL + GI+ +  GR G +RL 
Sbjct: 9   ALQMVLCVAQAEREGKRSTSKILAMGLEANPSFVRKMMVPLTRDGIIVSTLGRAGTIRLG 68

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQY 125
           RPAD+IT+ D+  +  E   +          C +  + C     + R+A  A  DVL + 
Sbjct: 69  RPADEITLCDIYTSVLEDKPLLAGRPEVPARCLVSANTCWFFKELAREAEQASLDVLAKR 128

Query: 126 SIECLVRN 133
           ++   +R 
Sbjct: 129 TVADALRE 136


>gi|325660753|ref|ZP_08149381.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472827|gb|EGC76037.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 158

 Score = 73.4 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++   H        ++A+  C +   + K++  L +A ++ T  G  G
Sbjct: 1   MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
           G    R A+++T+  V +A + SF      +           C + S +   +   +   
Sbjct: 60  GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSP-----EKKCCVASGMADVMAGIYGDL 114

Query: 120 -----DVLTQYSIECL 130
                D+L Q +I  +
Sbjct: 115 NACCKDLLKQRTIADV 130


>gi|124002311|ref|ZP_01687164.1| RRF2 family protein [Microscilla marina ATCC 23134]
 gi|123992140|gb|EAY31508.1| RRF2 family protein [Microscilla marina ATCC 23134]
          Length = 148

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M    R    I + ++  I  D        +A++   + + + +I+  L    I+ +V G
Sbjct: 1   MQANGRFTTAIHICIFMQIKGDEKLISSQVLADSVKTNPVVIRRIVARLRDNDIIGSVAG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--------SVL 111
            +GG  L RPA+QI++ D+ +A  E     + F   K    +   C ++         V 
Sbjct: 61  AKGGFFLKRPANQISLWDIYQAVRE----TDLFYKPK---KINPECVVSMNLSELVDGVY 113

Query: 112 RKALNAFFDVLTQYSIECL 130
            +A  A    L    +  L
Sbjct: 114 SEAELAMKSALAPVKVSDL 132


>gi|119385841|ref|YP_916896.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119376436|gb|ABL71200.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
           denitrificans PD1222]
          Length = 165

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   D P     +      + + + + +  L +AG+V   RG  GG R+    
Sbjct: 29  LHALLHMAEQ-DGPVTSEALGRCLGTNPVVVRRTMGLLREAGLVTAERGHAGGWRISADL 87

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +++  + +A  E    A    +   +C +  S    L     +A     +   + ++ 
Sbjct: 88  AAVSLRRLHEALGEPAIFAIGNRNETPECLVEQSVNAALEGAFAEAEALLLERFAEVTLA 147

Query: 129 CLVRN 133
            L  +
Sbjct: 148 DLAED 152


>gi|86751060|ref|YP_487556.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris HaA2]
 gi|86574088|gb|ABD08645.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris HaA2]
          Length = 146

 Score = 73.4 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A H D P    Q+A   C   + + + +  L +AG+V + RG  GG  +    
Sbjct: 11  LHALLHMAEH-DAPMTSDQLAACMCTHPVVVRRTMGLLREAGLVASERGPSGGWLITADP 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+ +A  E    A    +   +C +    +  L S    A     +   + ++ 
Sbjct: 70  AAVTLRDLHQALGEPAIFAIGNRNETPECLVEQVVNAALDSAFVDAEALLLERFAEVTLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 KLSAD 134


>gi|254241655|ref|ZP_04934977.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192]
 gi|126195033|gb|EAZ59096.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192]
          Length = 147

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   D P     +A+    + + + + +  L +AGIV + RG  GG R+    
Sbjct: 11  LHALLHMAEQ-DGPVTSETLAQCLGTNPVVVRRTMGYLREAGIVTSDRGHAGGWRIHADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +  S    L     +A        ++ ++ 
Sbjct: 70  GAVTLRQLHEALGEPAMFAIGNRNQTPECLVEQSVNAALEGTFAEAEALLLKRFSEITLA 129

Query: 129 CL 130
            L
Sbjct: 130 DL 131


>gi|224370917|ref|YP_002605081.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
          HRM2]
 gi|223693634|gb|ACN16917.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
          HRM2]
          Length = 143

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 41/84 (48%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + +    ++ L + A H+  P   + I+    I+   L + L  L KAGI+ T++G 
Sbjct: 1  MSASSKLSNSVKALCFLAKHHPVPQNSACISMDTGINASKLRRHLSALAKAGILRTIQGA 60

Query: 61 RGGVRLCRPADQITILDVVKATEE 84
           GG  L +  + I + ++  A E+
Sbjct: 61 AGGFVLKKAPEDIHLQEIYCALED 84


>gi|255597053|ref|XP_002536683.1| conserved hypothetical protein [Ricinus communis]
 gi|223518885|gb|EEF25699.1| conserved hypothetical protein [Ricinus communis]
          Length = 149

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   D P     +A+    + + + + +  L + GIV + +G  GG  +    
Sbjct: 11  LHALLHMAEQ-DGPLTSETLAQCMHTNPVVVRRTMGLLREVGIVNSTKGHTGGWTIAADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +  S    L     +A           ++ 
Sbjct: 70  KTVTLRQLHEALGEPAVFAIGNRNETPECLVEQSVNSVLDDAFAEAEALLLQRFENVTLA 129

Query: 129 CLVRN 133
            L   
Sbjct: 130 DLAAE 134


>gi|332187195|ref|ZP_08388935.1| transcriptional regulator family protein [Sphingomonas sp. S17]
 gi|332012895|gb|EGI54960.1| transcriptional regulator family protein [Sphingomonas sp. S17]
          Length = 150

 Score = 73.4 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + +L++     + P      A     + + + + +  L  AG V +++G  GG  L    
Sbjct: 2   LHLLIHMG-RMEGPLTSDDAAMMLGTNPVVVRRTMAGLRDAGYVRSMKGHGGGWSLTCGL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
           D IT+LDV +A  E+   A   A     C +  +    L   LR+A       L + ++ 
Sbjct: 61  DGITMLDVHRALGENRIFALGPADPAATCLVEQAVNGSLEEALREAEALLLRRLGEVTLA 120

Query: 129 CLVRN 133
            +  +
Sbjct: 121 DIAAD 125


>gi|325519582|gb|EGC98940.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
          TJI49]
          Length = 49

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49
          M LT  TDY +RV++Y A+H +    I +I++A  IS+  L K++Q L 
Sbjct: 1  MRLTDYTDYSLRVMLYLAVHGEGLATIQEISDAYGISKNHLMKVVQRLG 49


>gi|331085507|ref|ZP_08334592.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407745|gb|EGG87243.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 153

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++   H        ++A+  C +   + K++  L +A ++ T  G  G
Sbjct: 1   MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
           G    R A+++T+  V +A + SF      +           C + S +   +   +   
Sbjct: 60  GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSP-----EKKCCVASGMADVMAGIYGDL 114

Query: 120 -----DVLTQYSIECL 130
                D+L Q +I  +
Sbjct: 115 NACCKDLLKQRTIADV 130


>gi|254431044|ref|ZP_05044747.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
 gi|197625497|gb|EDY38056.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
          Length = 144

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          GIR L+  A   +      ++A A  + E  L ++L  L +AG+V   RGR GG RL RP
Sbjct: 9  GIRALLELATVPERWRSGPELAAAQQLPEPMLEQLLLRLRRAGVVVARRGRLGGYRLARP 68

Query: 70 ADQITILDVVKATEES 85
          A +I +  V+ A +  
Sbjct: 69 AAEIRLATVIAALQAP 84


>gi|160931599|ref|ZP_02078994.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
 gi|156869470|gb|EDO62842.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
          Length = 168

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++  +          +AE  C +   + K++  L KAG+V T  G  GG  L + 
Sbjct: 23  AVHGLVFLKLKK-QCLSSEALAENICTNPARVRKVMAKLKKAGLVSTKEGSEGGYSLAKN 81

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT------ 123
           A+QIT+  +  A +      E  +SH         C + S +   ++  +  L       
Sbjct: 82  AEQITLKQISAALQ-----IEFVSSHWRSGSQNLDCMVASGMADVMDRLYSDLDALCQKR 136

Query: 124 --QYSIECLVR 132
               +I  +  
Sbjct: 137 LEGITIADVAA 147


>gi|152971498|ref|YP_001336607.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|169303064|ref|YP_001693239.1| transcriptional regulator [Escherichia coli]
 gi|262043875|ref|ZP_06016963.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013154|ref|ZP_08307575.1| transcriptional regulator [Klebsiella sp. MS 92-3]
 gi|150956347|gb|ABR78377.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|167614014|gb|ABZ89637.1| transcriptional regulator [Escherichia coli]
 gi|259038729|gb|EEW39912.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533580|gb|EGF60298.1| transcriptional regulator [Klebsiella sp. MS 92-3]
          Length = 159

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 8   DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ +  GR 
Sbjct: 3   DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119
           G + L RPAD+IT+ D+  +  E   +          C +   +C    SV  +A  A  
Sbjct: 63  GSIHLGRPADKITLRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAEQASL 122

Query: 120 DVLTQYSIE 128
           +VL ++++ 
Sbjct: 123 NVLARHTVA 131


>gi|254446472|ref|ZP_05059948.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
 gi|198260780|gb|EDY85088.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
           DG1235]
          Length = 149

 Score = 73.1 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           K  +Y I  L Y A + +          IA A  +S   + K++  +  AG+V    G  
Sbjct: 6   KMANYAIASLSYLAANYEKEGFKANSQTIATARNLSRPLVGKLMSQMSTAGLVNGTPGPG 65

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
           GG  L R    IT+L++V+  E+      C       C     C     L    +     
Sbjct: 66  GGFFLSRAPKDITLLEIVRLFEKVEEALMC-PFGPGWCGNGDPCPFHYELEDKRDEMMTW 124

Query: 122 LTQYSIE 128
           L + ++E
Sbjct: 125 LAETNLE 131


>gi|315659054|ref|ZP_07911921.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|315496178|gb|EFU84506.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 140

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL + A H D     +++AE  C++ + L +++  L  +  ++T+RG+ GG +  + 
Sbjct: 8   AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--FFDVLTQY 125
              IT+ ++      +++        S   DC +      T    +        +     
Sbjct: 68  TAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQLILNFYRDK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIDDVIED 135


>gi|170017279|ref|YP_001728198.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169804136|gb|ACA82754.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 143

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + +    I +L Y  I          IA +   +   +  +++ L  AG++ T +G 
Sbjct: 1   MRFSYKLSDAIHILTYIDIFQGNDLSSQAIAASIGSNASVVRNLMRDLRVAGLLVTKQGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +  + I++ DV  A      +         +C +       L +   +   A 
Sbjct: 61  AA-PILAKSPEDISLYDVYIAINMVHTLLHIDPKTNPNCLVGSRIQDTLNNFYTEVEVAA 119

Query: 119 FDVLTQYSIECLVRN 133
           ++ +   S+  + ++
Sbjct: 120 YEKMRHISLADVTQH 134


>gi|70732916|ref|YP_262687.1| rrf2 family protein [Pseudomonas fluorescens Pf-5]
 gi|68347215|gb|AAY94821.1| rrf2 family protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 146

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L + A +     R   IA+        +  ++  +VKA I+++ RG  GG+ L RPA  
Sbjct: 13  ILSFVAANAPQRLRTETIAKWVKTHPTRVRSLVSLMVKANILKSWRGAHGGLTLARPASD 72

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-----LTQYSI 127
           IT+ +V  A +ES  +AE   +      +   C +  V  +   A  +      L   + 
Sbjct: 73  ITLREVYDAVQESSLIAEKIDNPFSG--MEEHCKVFDVFTRLF-AMLEANMRLDLGTITA 129

Query: 128 ECL 130
           + L
Sbjct: 130 DQL 132


>gi|108763227|ref|YP_629895.1| hypothetical protein MXAN_1643 [Myxococcus xanthus DK 1622]
 gi|108467107|gb|ABF92292.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 151

 Score = 72.7 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M    R    + VL++             +      + + + + +  L +AGI+ +V+G 
Sbjct: 1   MRRDSRLSVALHVLLHM-EDMGPVVTSEAMGRLLKANPVVVRRTMAGLREAGILTSVKGH 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117
            GG  L R  D +T+ DV +A       +         C +  +  +   L KAL+    
Sbjct: 60  GGGWSLARTLDTVTLGDVYEALGTPGLFSIGPHDESPGCLVEQA--VNDALGKALDQAAA 117

Query: 118 -FFDVLTQYSIECL 130
                L   S+  L
Sbjct: 118 LLMQHLRSTSVADL 131


>gi|306820009|ref|ZP_07453659.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551957|gb|EFM39898.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 141

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L+Y     D       +A++   +   + KI+  L  A I+E+ +G++G +
Sbjct: 3   TKFSIALHLLIYI-EETDKLVTSELLAQSVGTNASHIRKIIALLKDADIIESQQGKKG-M 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
            L   A ++T+  V  A      +     +   DCP+  +    L  +  ++       L
Sbjct: 61  MLKIKASELTLDKVYFAIYPEKELLHIHDTANQDCPVGANIRQALLPIFEESERQLVLNL 120

Query: 123 TQYSIECLVRN 133
              +++ L+ +
Sbjct: 121 KSKTLKSLIDD 131


>gi|291617389|ref|YP_003520131.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
 gi|291152419|gb|ADD77003.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
          Length = 183

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 4   TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           TK  DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ + 
Sbjct: 18  TKMLDYRFPTALQMVLSVAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 77

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKAL 115
            GR G + L RPA  IT+ D+  +  +   +          C +  + C    S+  +A 
Sbjct: 78  LGRTGSIHLGRPAADITLRDIYVSVTDDKKLWAARPDVAPRCLVSANLCWYFKSIAEEAE 137

Query: 116 NAFFDVLTQYSIEC 129
            A   VL + ++  
Sbjct: 138 QASLAVLAKRTVAD 151


>gi|289551542|ref|YP_003472446.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181073|gb|ADC88318.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
           HKU09-01]
          Length = 141

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL + A H D     +++AE  C++ + L +++  L  +  ++T+RG+ GG +  + 
Sbjct: 9   AVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGKHGGYQANQH 68

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--FFDVLTQY 125
              IT+ ++      +++        S   DC +      T    +        +     
Sbjct: 69  TAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQLILNFYRDK 128

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 129 TIDDVIED 136


>gi|259046428|ref|ZP_05736829.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175]
 gi|259036973|gb|EEW38228.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175]
          Length = 138

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y AIH+D      ++A   C +   + K++   VK G V T  G++GG +     
Sbjct: 9   IHCLTYLAIHHDNRYSSKELAFNACSNPAIVRKLMSLAVKKGWVSTAAGKQGGYQWISDP 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV----LTQYS 126
            +I + D+     E   + + F        LV S  +  ++ K              Q +
Sbjct: 69  SKIKLGDIFILVSEDARLEKTFKEASDPSCLVSS-RMGKIMGKLQEEQIQEQIRFYNQKT 127

Query: 127 IECLVRN 133
           I+ ++  
Sbjct: 128 IQDMIDK 134


>gi|23006957|ref|ZP_00049037.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 73

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          M LT+ TDY +R L+Y  +     + I++IA A  ISE  L K++  L  +G 
Sbjct: 1  MRLTRYTDYALRTLIYVGLREPRQSSIAEIAAAYGISESHLTKVVHQLGGSGW 53


>gi|304397746|ref|ZP_07379623.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
 gi|304354918|gb|EFM19288.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
          Length = 164

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A      +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA +IT
Sbjct: 16  VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEIT 75

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129
           + D+  +  E   +          C +  + C    S+  +A  A  DVL + ++  
Sbjct: 76  LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVAD 132


>gi|319790806|ref|YP_004152446.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
           EPS]
 gi|315593269|gb|ADU34335.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
           EPS]
          Length = 153

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P     +A A   + + + +I+  L +AG V + +G  GG  L    
Sbjct: 11  LHVLLHMA-EMDGPITSESLAAAMHTNPVVVRRIMAGLRQAGFVSSAKGHGGGWVLSCSL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            ++T+ D+  A      +A    +    C +  +    L      A           ++ 
Sbjct: 70  ARVTLGDIHNAVGAPALLAMGNRTESPGCIVEQAVNAALDDAFDAAEALLLKRFNSITLA 129

Query: 129 CLVRN 133
            L ++
Sbjct: 130 DLSKD 134


>gi|298291308|ref|YP_003693247.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Starkeya novella DSM 506]
 gi|296927819|gb|ADH88628.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
           506]
          Length = 154

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   D P     +A A   + + + +++  L   G V++ +G  GG  +    
Sbjct: 11  LHVLLHMA-ERDGPTTSDMLARAMDTNPVVIRRVMAGLRDRGYVQSEKGHGGGWTIACDL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             IT+ D+ +A      +A    +    C +  +    L     +A         Q S+ 
Sbjct: 70  GAITLRDIYEALGRPELLAMGNRTDAPGCLIEQAVNAALGETFDEAEALLLSRFGQISLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|260770102|ref|ZP_05879035.1| rrf2 family transcriptional regulator group III [Vibrio furnissii
           CIP 102972]
 gi|260615440|gb|EEX40626.1| rrf2 family transcriptional regulator group III [Vibrio furnissii
           CIP 102972]
          Length = 117

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
               Q A     + + + + +  L  AG V + +G+ GG  L     ++T+LD+ +A  E
Sbjct: 1   MTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQAVGE 60

Query: 85  SFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
               +  F +   +C +  +    L  VL +A        +Q S+  L + 
Sbjct: 61  PKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 111


>gi|288933998|ref|YP_003438057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Klebsiella variicola At-22]
 gi|290510944|ref|ZP_06550313.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|288888727|gb|ADC57045.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
           At-22]
 gi|289775937|gb|EFD83936.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 159

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 8   DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ +  GR 
Sbjct: 3   DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119
           G + L RPAD+IT+ D+  +  E   +          C +   +C    S+  +A  A  
Sbjct: 63  GSIHLGRPADKITLRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASL 122

Query: 120 DVLTQYSIE 128
           +VL ++++ 
Sbjct: 123 NVLARHTVA 131


>gi|32266962|ref|NP_860994.1| hypothetical protein HH1463 [Helicobacter hepaticus ATCC 51449]
 gi|32263014|gb|AAP78060.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 161

 Score = 72.3 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 24/160 (15%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND-------------YPNRISQIAEACCISELFLFKILQP 47
           M +  R    I + +     N+                    +A++  ++ + +  IL  
Sbjct: 1   MQIPSRFSIAIHICLCLEFFNEDSGFNANTDKTHCKKMTSEALADSVGVNSVIIRNILAQ 60

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--------ESFFVAECFASHKIDC 99
           L  AG++   RG  GG  L +   +I++LD+  A +            + +  A+    C
Sbjct: 61  LKSAGLINVARG-SGGSVLSKKPQEISLLDIFNAVQSMGGKETNGKNRLFKFHANPNELC 119

Query: 100 PLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           PL  +    L S   KA       L++  +  L++   ++
Sbjct: 120 PLGKNIHLILDSSFEKAQITLESYLSKVKLSNLLKKLQNL 159


>gi|317047988|ref|YP_004115636.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949605|gb|ADU69080.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
          Length = 161

 Score = 71.9 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A      +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA +IT
Sbjct: 16  VAMAEQLGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPASEIT 75

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129
           + D+  +  E   +          C +  + C    S+  +A  A  +VL + ++  
Sbjct: 76  LRDIYTSVIEDKKLWASRPDVAPRCLVSANLCWYFKSIADEAEQASLNVLEKRTVAD 132


>gi|104773289|ref|YP_618269.1| putative transcriptional regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513261|ref|YP_812167.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422370|emb|CAI96892.1| Putative transcriptional regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116092576|gb|ABJ57729.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 136

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L Y  I  D       IA +   +   +  ++  L KAG ++T +G      L + 
Sbjct: 4   AVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQG-SAEPELAKK 62

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
            ++I++ D+  A      +       +  CP+ G+    L     +   A F  + + S+
Sbjct: 63  PEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAAFAKMREISL 122

Query: 128 ECLVRNRSSIKKI 140
             +V       ++
Sbjct: 123 REIVDQIKEEGQL 135


>gi|328958341|ref|YP_004375727.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4]
 gi|328674665|gb|AEB30711.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4]
          Length = 144

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   HN+       +AE  C + + + ++L      G+V+T +G  GG  L   
Sbjct: 7   AVHGLVYLG-HNNSSFTSETLAENICTNPVRVRRVLSKCRIKGLVQTKKGVHGGYFLTDN 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124
            + IT+ DV +A +         +    +      C ++S + +A++  +  L +     
Sbjct: 66  LEAITLKDVYEAIQIPIIQNTWHSGDVNE-----QCMISSGMSEAMDDLYVELNKDAVAK 120

Query: 125 ---YSIECL 130
               +++ +
Sbjct: 121 LATITLKDM 129


>gi|188533841|ref|YP_001907638.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
 gi|188028883|emb|CAO96745.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
          Length = 144

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A           +A+    +  F+ K++ PL + GI+ +  GR G +RL RPA QIT+ D
Sbjct: 10  AQSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIVSTLGRSGSIRLGRPAQQITLCD 69

Query: 78  VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133
           +  +  E   +       +  C +   +C     + ++A  A  DVL + ++   + +
Sbjct: 70  IYLSVIEDKPLMAGRPEVEPCCVVSANACWYFKELAKEAEQASLDVLAKRTVAEALHD 127


>gi|298290312|ref|YP_003692251.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
          family [Starkeya novella DSM 506]
 gi|296926823|gb|ADH87632.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
          506]
          Length = 147

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 2  HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+ ++   I  ++  A+H    P     +A    +    L  +LQ LV AG+++ VRG 
Sbjct: 3  RLSDKSLLAIAAVVDVALHARGMPVAAKALAARHDLPPRHLEPVLQALVHAGVLKGVRGP 62

Query: 61 RGGVRLCRPADQIT 74
          RGG  L R   +IT
Sbjct: 63 RGGYELARERRRIT 76


>gi|259502086|ref|ZP_05744988.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
 gi|259169899|gb|EEW54394.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
          Length = 143

 Score = 71.9 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L+Y  I     N  S IAE+   +   + +++  +VKAGI+E   G+
Sbjct: 1   MKYSHRLSDAVHILVYLEILGS--NSSSAIAESVNSNPSLIRRLIAHMVKAGILE-RSGQ 57

Query: 61  RG--GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKAL 115
            G   ++L RPAD+I++LD+ +A E      +           +  C    L +  ++  
Sbjct: 58  HGEITIKLTRPADRISLLDIYQAVESHQEFLD-VDQEINRLHPLSRCMPEVLGAAYQRVQ 116

Query: 116 NAFFDVLTQYSIECLVRNRSS 136
            A    + Q S+  +V    +
Sbjct: 117 QAAEQEMAQISLAAVVDQARA 137


>gi|311108691|ref|YP_003981544.1| HTH domain-containing protein 2 [Achromobacter xylosoxidans A8]
 gi|310763380|gb|ADP18829.1| HTH domain protein 2 [Achromobacter xylosoxidans A8]
          Length = 141

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  +          +A+    +E+ + + +  L  AG+V +  GR GG  L R  
Sbjct: 11  LHVLIHMHLRGGT-TTSGTLAKMLHTNEVVVRRSMAALRAAGMVTSTGGRNGGWVLARGL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           + IT  DV +A       A   A     CP     +  +   LR+  +A    L   S+ 
Sbjct: 70  ETITARDVHEAIAHGTVFAIGPADDNPACPVERTANQLVADSLREGEHALLQRLGAVSLS 129

Query: 129 CLVRNRSSIKK 139
            L    +S ++
Sbjct: 130 ELAAEIASREE 140


>gi|308186770|ref|YP_003930901.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
 gi|308057280|gb|ADO09452.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
          Length = 164

 Score = 71.5 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A      +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA  IT
Sbjct: 16  VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADIT 75

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIEC 129
           + D+  +  E   +          C +  + C    S+  +A  A  DVL + ++  
Sbjct: 76  LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVAD 132


>gi|317969720|ref|ZP_07971110.1| transcriptional regulator [Synechococcus sp. CB0205]
          Length = 144

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
             +S+IAEA  +    L ++L  L +A +VE  RGR+GG RL RPA+ I + +V+KA   
Sbjct: 24  CSVSEIAEAQGLPAPMLEQLLLQLRRAALVEAKRGRQGGYRLSRPAEAIPVGEVLKAVGA 83

Query: 85  SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
              +         D        L S+ R+  +A    L Q +++ L+ +  S ++  +
Sbjct: 84  PLVL-----DAPGDSSRAEQDVLKSMGRRLQSALDRELKQLTLQELLFDLQSWQECLS 136


>gi|227539595|ref|ZP_03969644.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240508|gb|EEI90523.1| Rrf2 family transcriptional regulator [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 138

 Score = 71.5 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              ++    +  D       IA +  ++ + + K ++ L +A +V +  G+ GGVR+   
Sbjct: 10  ATHIIALLMLERDAWLSSDYIAGSINVNPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69

Query: 70  ADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
            ++ T+ DV KAT   +E       + +   +CP+  +    L+ V           L Q
Sbjct: 70  INKKTLADVYKATLASDEKGK----YNNPNPNCPVGKNINSYLSIVYNDIEEQHITYLNQ 125

Query: 125 YSIECL 130
            SI+ L
Sbjct: 126 ISIQDL 131


>gi|77745347|gb|ABB02574.1| putative transcriptional regulator [Lactobacillus reuteri]
          Length = 134

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
             ++ +       IA++   +   + +++  L  AG++ T +G     RL +   +I + 
Sbjct: 1   MHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGAA-EPRLAKKPREINLF 59

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
           D+ +A      +        + C + G+    L     +   A F+ + Q S+  ++ +
Sbjct: 60  DIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAAFNEMKQISLADVIDD 118


>gi|304322284|ref|YP_003855927.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis
           HTCC2503]
 gi|303301186|gb|ADM10785.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis
           HTCC2503]
          Length = 154

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL++ A   D P    ++A+A   + + + +++  L   G+V + +G  GG  L   
Sbjct: 10  ALHVLLHLA-EADAPMTSERLAKAMATNPVVVRRVMAGLRDEGLVASEKGHGGGWTLTCN 68

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSI 127
             + T+ DV +A            +    C +  +    L   L  A     D     ++
Sbjct: 69  LSKTTLRDVYQALGHPPLFGMGHRNEASQCAVEQAVNAALGDALDAAEAVLLDRFGNVTL 128

Query: 128 ECLVRN 133
             L R+
Sbjct: 129 ADLSRD 134


>gi|329927530|ref|ZP_08281715.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
 gi|328938399|gb|EGG34788.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
          Length = 149

 Score = 71.1 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+    H+        IA         + ++L+ L +A ++E+  GR GG RL + 
Sbjct: 26  AVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGYRLRKN 84

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122
           A  I++ +V    +    ++E            G C           +L +   +   +L
Sbjct: 85  ARDISLAEVYSILQVHSSISESMLDAA-----AGHCFAEEIKESFAGILSEIEESTLKIL 139

Query: 123 TQYSIECLVR 132
              +I  + +
Sbjct: 140 ESRTIADIAQ 149


>gi|114798919|ref|YP_761419.1| hypothetical protein HNE_2740 [Hyphomonas neptunium ATCC 15444]
 gi|114739093|gb|ABI77218.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 147

 Score = 71.1 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  +++ A   D P    ++A     + + + + +  L +AG V + RG  GG R+    
Sbjct: 11  LHAILHMAEQ-DRPMTSDELAVCMRTNPVVVRRTMGLLREAGFVSSERGHSGGWRIKADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
            ++T+  + +A  E    A        +C +  S    L S   +A     +     ++ 
Sbjct: 70  ARLTLRQLHEALGEPTVFAIGNRHETPECLVEQSVNSVLDSAFAEAEALLLERFASVTLA 129

Query: 129 CLVRN 133
            L   
Sbjct: 130 DLAAE 134


>gi|296111337|ref|YP_003621719.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154]
 gi|295832869|gb|ADG40750.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154]
          Length = 137

 Score = 70.7 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+ +    I +L Y  I          IA +   +   +  ++  L  A ++ T +G 
Sbjct: 1   MGLSYKLSDAIHILAYIEILKKQDLSSKSIAASIGANASVVRNLMLDLRSANLLTTHQGV 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
               +L +  D I+I DV  A      +         +C + G     L        +A 
Sbjct: 61  A-TPQLAKSPDDISIYDVYCAISMPHNLLNIDPKTNPNCLVGGHIQETLNHFYSDIESAA 119

Query: 119 FDVLTQYSIECLVRN 133
           +D +   S+  ++++
Sbjct: 120 YDQMKTISLAHVIQD 134


>gi|227514658|ref|ZP_03944707.1| possible transcriptional regulator [Lactobacillus fermentum ATCC
           14931]
 gi|227086967|gb|EEI22279.1| possible transcriptional regulator [Lactobacillus fermentum ATCC
           14931]
          Length = 151

 Score = 70.7 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    I ++++ A    D     + IA++   ++  + +I+  L +  I+++V G
Sbjct: 1   MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60

Query: 60  ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
               +    L +   ++ +  + +A +    +         +C +       L  +  + 
Sbjct: 61  HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 115

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A    L  YSI  ++  
Sbjct: 116 QRAALAKLATYSIRDVLNQ 134


>gi|261407465|ref|YP_003243706.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
           Y412MC10]
 gi|261283928|gb|ACX65899.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           Y412MC10]
          Length = 149

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+    H+        IA         + ++L+ L +A ++E+  GR GG RL + 
Sbjct: 26  AVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGYRLRKN 84

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLRKALNAFFDVL 122
           A  I++ +V    +    +++            G C           +L +   +   +L
Sbjct: 85  ARDISLAEVYSILQVHSSISDSMLDAA-----AGHCFAEEIKESFAGILSEIEESTLKIL 139

Query: 123 TQYSIECLVR 132
              +I  + +
Sbjct: 140 ESRTIADIAQ 149


>gi|326316721|ref|YP_004234393.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373557|gb|ADX45826.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 147

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A H + P     +A+      + + + +  L  AGIV + +G  GG R+    
Sbjct: 11  LHALLHMAEH-EGPMTSDALAQCLGTHPVVVRRTMGYLRDAGIVTSDKGHGGGWRIHADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +  S    L     +A        ++ ++ 
Sbjct: 70  GTVTLRQLHEALGEPAMFAIGNRNESPECLVKQSVNAALEGTFAEAEALLLKRFSEITLA 129

Query: 129 CL 130
            L
Sbjct: 130 DL 131


>gi|329891097|ref|ZP_08269440.1| transcriptional regulator family protein [Brevundimonas diminuta
          ATCC 11568]
 gi|328846398|gb|EGF95962.1| transcriptional regulator family protein [Brevundimonas diminuta
          ATCC 11568]
          Length = 407

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +  L++ A H      P     +A     + + + + +  L + G+V + +G  GG RL 
Sbjct: 11 LHALLHMAEHEQRCGRPMTSDMLATCLSTNPVVVRRTMAGLREQGLVVSEKGHGGGWRLA 70

Query: 68 RPADQITILDVVKATEESFFV 88
          RP + +T+  V  A  E   +
Sbjct: 71 RPLEAVTLGQVHAALGEPGLL 91


>gi|184155248|ref|YP_001843588.1| hypothetical protein LAF_0772 [Lactobacillus fermentum IFO 3956]
 gi|183226592|dbj|BAG27108.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 158

 Score = 70.7 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    I ++++ A    D     + IA++   ++  + +I+  L +  I+++V G
Sbjct: 8   MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 67

Query: 60  ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
               +    L +   ++ +  + +A +    +         +C +       L  +  + 
Sbjct: 68  HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 122

Query: 115 LNAFFDVLTQYSIECLVRN 133
             A    L  YSI  ++  
Sbjct: 123 QRAALAKLATYSIRDVLNQ 141


>gi|323692303|ref|ZP_08106542.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503628|gb|EGB19451.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 141

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++ + H         +A+  C +   + K++  L KA +++T  G  G
Sbjct: 1   MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    R A ++ +  +  A +  F  A   +           C ++S +   +   +D L
Sbjct: 60  GYFFHREAREVDLQMIADAFDTPFVAASWKSGDPD-----RDCLVSSGMAGVMTEIYDTL 114

Query: 123 T--------QYSIECL 130
                    Q +I  +
Sbjct: 115 DQECRKRLKQITIYDI 130


>gi|323487467|ref|ZP_08092762.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum
           WAL-14163]
 gi|323399236|gb|EGA91639.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum
           WAL-14163]
          Length = 141

 Score = 70.7 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++ + H         +A+  C +   + K++  L KA +++T  G  G
Sbjct: 1   MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    R A ++ +  +  A +  F  A   +           C ++S +   +   +D L
Sbjct: 60  GYFFHREAREVDLQMIADALDTPFVAASWKSGDPD-----RDCLVSSGMAGVMTEIYDTL 114

Query: 123 TQ--------YSIECL 130
            Q         +I  +
Sbjct: 115 DQECRKRLKLITIYDI 130


>gi|325928913|ref|ZP_08190075.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
          perforans 91-118]
 gi|325540709|gb|EGD12289.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
          perforans 91-118]
          Length = 157

 Score = 70.4 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++     + VL++ A     P    QIA     + + + + +  L  AG V++ RG  
Sbjct: 6  RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          GG ++     Q+T+LDV +A       A         C
Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQC 98


>gi|283478404|emb|CAY74320.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
           12163]
 gi|310767659|gb|ADP12609.1| HTH-type transcriptional regulator iscR [Erwinia sp. Ejp617]
          Length = 152

 Score = 70.4 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A           +A+    +  F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D
Sbjct: 19  AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCD 78

Query: 78  VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133
           +  +  E   +       +  C +   +C     + ++A  A  DVL + ++   + +
Sbjct: 79  IYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 136


>gi|310829321|ref|YP_003961678.1| transcriptional regulator family protein [Eubacterium limosum
           KIST612]
 gi|308741055|gb|ADO38715.1| transcriptional regulator family protein [Eubacterium limosum
           KIST612]
          Length = 138

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++   H         +AE  C +   + K++  L KAG+V+T  G  GG      
Sbjct: 8   AVHALVFLNHHQGDILSSEALAENVCTNPARIRKVMAKLKKAGLVKTKSGSEGGYYFDLD 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121
              + +  + +A           +           C + S +   ++  F          
Sbjct: 68  PFSVNLRLICEAIGGRVVSTSWRSGDS-----EMDCLIASGMADIMDEIFMSLDAAGKKE 122

Query: 122 LTQYSIECL 130
           L + ++  +
Sbjct: 123 LEKTTVGDI 131


>gi|206577940|ref|YP_002237025.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
 gi|206566998|gb|ACI08774.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
          Length = 159

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 8   DY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     +++++    A      +  + +A     +  F+ K++ PL + GI+ +  GR 
Sbjct: 3   DYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEATPSFIRKLMVPLTRDGIIVSTLGRN 62

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFF 119
           G + L RPAD+IT+ D+  +  E   +          C +   +C    S+  +A  A  
Sbjct: 63  GSIHLGRPADKITLRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASL 122

Query: 120 DVLTQYSIE 128
           +VL ++++ 
Sbjct: 123 NVLARHTVA 131


>gi|78046202|ref|YP_362377.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78034632|emb|CAJ22277.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
          campestris pv. vesicatoria str. 85-10]
          Length = 157

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++     + VL++ A     P    QIA     + + + + +  L  AG V++ RG  
Sbjct: 6  RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60

Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
          GG ++     Q+T+LDV +A       A         C
Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQC 98


>gi|228922119|ref|ZP_04085429.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228940467|ref|ZP_04103036.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228953676|ref|ZP_04115716.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228959598|ref|ZP_04121279.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228979946|ref|ZP_04140265.1| Rrf2 [Bacillus thuringiensis Bt407]
 gi|229047069|ref|ZP_04192691.1| Rrf2 [Bacillus cereus AH676]
 gi|229070848|ref|ZP_04204076.1| Rrf2 [Bacillus cereus F65185]
 gi|229080611|ref|ZP_04213131.1| Rrf2 [Bacillus cereus Rock4-2]
 gi|229110826|ref|ZP_04240389.1| Rrf2 [Bacillus cereus Rock1-15]
 gi|229128677|ref|ZP_04257655.1| Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|229145982|ref|ZP_04274361.1| Rrf2 [Bacillus cereus BDRD-ST24]
 gi|229151583|ref|ZP_04279785.1| Rrf2 [Bacillus cereus m1550]
 gi|229179684|ref|ZP_04307034.1| Rrf2 [Bacillus cereus 172560W]
 gi|229191500|ref|ZP_04318483.1| Rrf2 [Bacillus cereus ATCC 10876]
 gi|228591980|gb|EEK49816.1| Rrf2 [Bacillus cereus ATCC 10876]
 gi|228603790|gb|EEK61261.1| Rrf2 [Bacillus cereus 172560W]
 gi|228631827|gb|EEK88454.1| Rrf2 [Bacillus cereus m1550]
 gi|228637590|gb|EEK94041.1| Rrf2 [Bacillus cereus BDRD-ST24]
 gi|228654870|gb|EEL10730.1| Rrf2 [Bacillus cereus BDRD-Cer4]
 gi|228672705|gb|EEL27986.1| Rrf2 [Bacillus cereus Rock1-15]
 gi|228702712|gb|EEL55178.1| Rrf2 [Bacillus cereus Rock4-2]
 gi|228712238|gb|EEL64185.1| Rrf2 [Bacillus cereus F65185]
 gi|228724258|gb|EEL75593.1| Rrf2 [Bacillus cereus AH676]
 gi|228779785|gb|EEM28033.1| Rrf2 [Bacillus thuringiensis Bt407]
 gi|228800090|gb|EEM47026.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805910|gb|EEM52489.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228819232|gb|EEM65288.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228837535|gb|EEM82866.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 116

 Score = 70.4 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R  D+I +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +    +C  S+         C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|260662247|ref|ZP_05863143.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260553630|gb|EEX26522.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 151

 Score = 70.4 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M  + R    I ++++ A    D     + IA++   ++  + +I+  L +  I+++V G
Sbjct: 1   MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60

Query: 60  ---RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKA 114
               +    L +   ++ +  + +A +    +         +C +       L  +  + 
Sbjct: 61  HVCPQ----LVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQV 115

Query: 115 LNAFFDVLTQYSIECL 130
             A    L  YSI  +
Sbjct: 116 QRAALAKLATYSIRDV 131


>gi|332297044|ref|YP_004438966.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
 gi|332180147|gb|AEE15835.1| transcriptional regulator, BadM/Rrf2 family [Treponema
           brennaborense DSM 12168]
          Length = 140

 Score = 70.0 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y + H +       +AE  C + + + K+L  L  A +VET  G  GG R    
Sbjct: 8   AVHALVYLS-HKNGVLSSDALAENICTNPVRIRKVLSKLAGAALVETKEGADGGYRFTGD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF--------FDV 121
           A  +T+ DV       F V    +       +   C ++S +  A++           + 
Sbjct: 67  AAHVTLADVAGILNVDFTVMNWRSG-----SIDKPCLISSGMAAAMDTIMADLNACCLER 121

Query: 122 LTQYSIECL 130
           L + ++  +
Sbjct: 122 LRRITVADI 130


>gi|325916311|ref|ZP_08178589.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537482|gb|EGD09200.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 150

 Score = 70.0 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 15/135 (11%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A  +  P    QIA     + + + + +  L  AG V++ +G  GG ++    
Sbjct: 2   LHVLLHMA-RSAQPMTSEQIASMLATNAVVVRRTMAGLRSAGYVQSSKGHNGGWQIACDL 60

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR--------KALNAFFDVL 122
            Q+T+LDV +A      +    A H         CG+  V+          A       L
Sbjct: 61  AQVTLLDVHRAVGGP-HLFAIGADHPN-----PQCGVERVVNAAIADALADAEALLLQRL 114

Query: 123 TQYSIECLVRNRSSI 137
              ++  L     S+
Sbjct: 115 GTVTLAALASEFDSL 129


>gi|251798939|ref|YP_003013670.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Paenibacillus sp. JDR-2]
 gi|247546565|gb|ACT03584.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
           JDR-2]
          Length = 166

 Score = 70.0 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++ L+  +   +     +++A         L ++L  L +  ++ET  GR GG RL R 
Sbjct: 31  SLQALVVLSRKPNA-CTSAELAGHMKSEATMLRRVLAKLAREQLLETREGRDGGYRLKRA 89

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFFDVLTQYSI 127
            + IT+ DV  A      +                  +    +  +      +VL Q +I
Sbjct: 90  PETITLADVYLALRVGEPLCSGMLDTTGIHDFGQEMRVAFMEITDEVERRTLEVLRQVTI 149

Query: 128 ECLVRNRSSIKKI 140
             L     ++K++
Sbjct: 150 AQLSERICTLKRM 162


>gi|188583718|ref|YP_001927163.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347216|gb|ACB82628.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           populi BJ001]
          Length = 154

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   + P     +A     + + + +I+  L   G V + +G  GG R+    
Sbjct: 11  LHVLLHMA-EIEGPVTSEFLAGMMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDV 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+ +A       A    S    C +  +    + +  R+A       L + ++ 
Sbjct: 70  QAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDASFREAEALLMAQLGRITLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|259908456|ref|YP_002648812.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
 gi|224964078|emb|CAX55584.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
          Length = 143

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A           +A+    +  F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D
Sbjct: 10  AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCD 69

Query: 78  VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133
           +  +  E   +       +  C +   +C     + ++A  A  DVL + ++   + +
Sbjct: 70  IYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 127


>gi|228966286|ref|ZP_04127344.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228793419|gb|EEM40964.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 116

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 19/118 (16%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R  D+I +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +             CP     C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|292488270|ref|YP_003531152.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|292899465|ref|YP_003538834.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291199313|emb|CBJ46430.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291553699|emb|CBA20744.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
           CFBP1430]
 gi|312172409|emb|CBX80666.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 152

 Score = 70.0 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A           +A+    +  F+ K++ PL + GI+ +  GR G +RL RPA  IT+ D
Sbjct: 19  AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAQLITLCD 78

Query: 78  VVKATEESFFVAECFASHKIDCPLVG-SCG-LTSVLRKALNAFFDVLTQYSIECLVRN 133
           +  +  E   +       +  C +   +C     + ++A  A  DVL + ++   + +
Sbjct: 79  IYLSVIEDKPLMAGRPEVEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 136


>gi|307244538|ref|ZP_07526643.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
 gi|306492065|gb|EFM64113.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
          Length = 141

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L+Y             +A++   +  ++ KI+  L  A I+E+ +G++G +
Sbjct: 3   TKFSIALHILVYI-EETKDIVTSELLAKSVGTNASYIRKIIILLKSANIIESKQGKKG-M 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
            L   +D++T+  V  A      +     +   +CP+  +    L  +  ++       L
Sbjct: 61  SLKIASDELTLDMVYFAVYPEKELLHIHDTSNQECPVGENIREALLPIFEESEKQLILNL 120

Query: 123 TQYSIECLVRN 133
            + +++ LV N
Sbjct: 121 RKETLKSLVEN 131


>gi|329298886|ref|ZP_08256222.1| BadM/Rrf2 family transcriptional regulator [Plautia stali symbiont]
          Length = 140

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
              +  + +A     +  F+ K++ PL + GI+ +  GR G + L RPA +IT+ D+  +
Sbjct: 2   GKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDIYTS 61

Query: 82  TEESFFVAECFASHKIDCPLVGS-CG-LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
             E   +          C +  + C    S+  +A  A   VL   ++   +      ++
Sbjct: 62  VIEDKRLWASRPDVAPRCLVSANLCWYFKSIAEQAEEASLKVLETRTVADALNELKRRRR 121

Query: 140 IF 141
           + 
Sbjct: 122 VL 123


>gi|294784028|ref|ZP_06749350.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479840|gb|EFG27619.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 146

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + VL Y     +       +A++   +   + KIL  L  A I+E+ +G++G +
Sbjct: 3   TKFSIALHVLAYI-EETNNTVTSELLAKSVGTNASHIRKILALLKDADIIESQQGKKG-I 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
            L   A+++++  +         +     +   DCP+  +    L  +  ++       L
Sbjct: 61  VLKIKANELSLDKIYFGVYPEKELLHVHDTANPDCPVGATIKEALLPIFEESERQLILSL 120

Query: 123 TQYSIECLVRNRSSIKKIFN 142
              +++ L+ +   + KI+N
Sbjct: 121 KSKTLKSLIED---MYKIYN 137


>gi|284048823|ref|YP_003399162.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
 gi|283953044|gb|ADB47847.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
           fermentans DSM 20731]
          Length = 169

 Score = 69.6 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 6   RTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++D+   +  L+Y + H        ++AE  C +   + KI+  L K GI+ T  G  GG
Sbjct: 2   KSDFIVAVHALVYLS-HRGCLASSEELAENICTNPARVRKIMGKLKKMGIITTREGHVGG 60

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
              C   +++++ ++ +  +  F   +  + ++ +     +C ++S +    ++ +  L 
Sbjct: 61  YCPCEGLEKVSLYEIAQGMDTVFVDTKWRSGNEEN-----NCFISSGMSSVFDSLYRELD 115

Query: 124 Q--------YSIEC----LVRNRSSIKK 139
           +         ++      +V  + S +K
Sbjct: 116 RLCMDHLKGITLGDVTAQIVETQRSSRK 143


>gi|28377275|ref|NP_784167.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|308179493|ref|YP_003923621.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270106|emb|CAD63006.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
 gi|308044984|gb|ADN97527.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 161

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 1   MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L    D+   +  ++Y   H D      ++A++  ++ + +  IL  L K G +    
Sbjct: 6   MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 61

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109
           G+ GG +L      + + D+   T         F              P+  +    LT 
Sbjct: 62  GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 121

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           +   A   +     Q+++  L
Sbjct: 122 LFTVADRQYRAYYHQFTMADL 142


>gi|296116889|ref|ZP_06835494.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976582|gb|EFG83355.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 143

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+  TD+ ++ L+     +  P  + +I+  C +S   +  +LQ L   G++E     
Sbjct: 1   MQLSLHTDHAVKFLICM-TQSGMPACVQEISGRCGLSTREVAGVLQDLHHCGLIEHATTG 59

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
            G +RL +   ++ I DV+++ E    +           P  G+     +   A  AF D
Sbjct: 60  EGFLRLRKDPARVRIGDVIRSIEAVRPMT----------PKEGA--FAPMFDMAHAAFVD 107

Query: 121 VLTQYSIECLV 131
            L  YS+  L 
Sbjct: 108 ALNDYSLSDLA 118


>gi|325570130|ref|ZP_08146030.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325156789|gb|EGC68961.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 142

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 14  LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           + Y  I+ D        IA++   +   + KI+  L K+G++ T  G+     L +    
Sbjct: 1   MCYIVIYKDTNMLSSEMIAQSVETNAANVRKIMANLKKSGLIRTTTGKP-KPYLAKDPKD 59

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           I++LD+ K+   +  + +       DC +  +      +++ L+  ++ L Q ++E 
Sbjct: 60  ISLLDIYKSIHGNTNLIQVDPKTNPDCIVGAN------IQEVLDGAYNEL-QVTVEE 109


>gi|302381617|ref|YP_003817440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192245|gb|ADK99816.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 180

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A    +    + +A +   + + + ++   L KAG++ T  G  GG  L    +QIT+  
Sbjct: 38  AFDAAHAAPSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLMRPEQITLDV 97

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           V+KA      +     +    CP+       +  VL  A  A  + L++ +I  L+   +
Sbjct: 98  VLKAVNGCAHLGS-APAGAKGCPVGEHIPRQVGKVLTLADRAASEALSRITIADLLAENA 156

Query: 136 S 136
            
Sbjct: 157 P 157


>gi|254555491|ref|YP_003061908.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
 gi|254044418|gb|ACT61211.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
          Length = 161

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 1   MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L    D+   +  ++Y   H D      ++A++  ++ + +  IL  L K G +    
Sbjct: 6   MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 61

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109
           G+ GG +L      + + D+   T         F              P+  +    LT 
Sbjct: 62  GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 121

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           +   A   +     Q+++  L
Sbjct: 122 LFTVADRQYRAYYHQFTMADL 142


>gi|300767015|ref|ZP_07076928.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495553|gb|EFK30708.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 156

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 1   MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L    D+   +  ++Y   H D      ++A++  ++ + +  IL  L K G +    
Sbjct: 1   MKL----DFSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 56

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTS 109
           G+ GG +L      + + D+   T         F              P+  +    LT 
Sbjct: 57  GKNGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTD 116

Query: 110 VLRKALNAFFDVLTQYSIECL 130
           +   A   +     Q+++  L
Sbjct: 117 LFTVADRQYRAYYHQFTMADL 137


>gi|293402324|ref|ZP_06646461.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304171|gb|EFE45423.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 148

 Score = 69.2 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  + Y   H        ++AE  C++ + + K++  L   G+++T +G  GG      
Sbjct: 8   AVHAMAYLRKHP-RLISSEELAENICVNPVRVRKVMAKLKAYGLIDTKQGLSGGYSFSIQ 66

Query: 70  ADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF----FDVLTQ 124
            + +T+  +  A +   F +   + +  + C +    G+  V+           ++ L  
Sbjct: 67  NETVTLSQIYDALQMRIFHSNWRSGNAHLKCIVSS--GMAQVMDDLYETMEATCYEKLKA 124

Query: 125 YSIECLVRNRSSIKKI 140
            SI  +V+    +  +
Sbjct: 125 ISICDVVKELEQLYAL 140


>gi|229031073|ref|ZP_04187084.1| Rrf2 [Bacillus cereus AH1271]
 gi|228730234|gb|EEL81203.1| Rrf2 [Bacillus cereus AH1271]
          Length = 116

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   +I + ++ + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +             CP     C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP---------KCPESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|116332849|ref|YP_794376.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116098196|gb|ABJ63345.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
          ATCC 367]
          Length = 154

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 1  MHLTKRTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L    D+   +  L+Y   +        ++A +  ++ + +  IL  L K G +E   
Sbjct: 1  MRL----DFSVAVHSLLYLDENRPRKIASRELATSLQLNAVMIRNILSVLHKQGYIEGFV 56

Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
          G+ GG +L +   +I + ++   T   
Sbjct: 57 GKNGGYQLIKDLAEINVGELYDLTIPP 83


>gi|323486594|ref|ZP_08091915.1| transcriptional regulator family protein [Clostridium symbiosum
           WAL-14163]
 gi|323692263|ref|ZP_08106504.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399975|gb|EGA92352.1| transcriptional regulator family protein [Clostridium symbiosum
           WAL-14163]
 gi|323503678|gb|EGB19499.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 143

 Score = 68.8 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G+  L++   H         +AE  C +   + KIL  L KAG+V T  G  GG +    
Sbjct: 8   GVHALVFL-NHKKTVVSSEMVAENVCTNPARVRKILASLKKAGLVSTKEGLDGGYQFSAD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ----- 124
           A ++ +  +  A           +S      L  +C + S +   L+  +  L Q     
Sbjct: 67  ASKVNLCMIADALG-----VAFVSSSWKSGNLEKNCLIASGMAGLLDGLYQQLDQKCREE 121

Query: 125 ---YSIECL 130
               +I  L
Sbjct: 122 LKHITIADL 130


>gi|124384456|ref|YP_001026690.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|167845078|ref|ZP_02470586.1| putative transcriptional regulator [Burkholderia pseudomallei
           B7210]
 gi|254298135|ref|ZP_04965588.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
 gi|124292476|gb|ABN01745.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
 gi|157807552|gb|EDO84722.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
          Length = 141

 Score = 68.8 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L   ++    P     IA +   +   + ++L  L  AG+  +  G  GG  L R   +
Sbjct: 1   MLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGAGGGALLAREPSR 60

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
           IT+LDV +A +++   A    +    C +       LT  +  A  A    L   ++  +
Sbjct: 61  ITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAMEASLATRTLADV 120

Query: 131 VRN 133
             +
Sbjct: 121 TAD 123


>gi|266620987|ref|ZP_06113922.1| transcriptional regulator family protein [Clostridium hathewayi DSM
           13479]
 gi|288867368|gb|EFC99666.1| transcriptional regulator family protein [Clostridium hathewayi DSM
           13479]
          Length = 137

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L+Y   H         +A   C +   + K++  L KAGI+ T  G  G
Sbjct: 1   MTSEFAIAVHALVYL-NHRQQTVSSEALASNVCTNPARVRKVMAKLKKAGIISTKEGLEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    + +  + +  V  A E  F  A   +  K        C + S +   ++  +  L
Sbjct: 60  GYHFEKDSSCVNLRQVCDALEVDFVSASWKSGDK-----EMDCMIASGMAAIMDEIYADL 114

Query: 123 T--------QYSIECL 130
                      +I  +
Sbjct: 115 DELCRKRLESITIASI 130


>gi|241896629|ref|ZP_04783925.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870110|gb|EER73861.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313]
          Length = 154

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 1   MHLT-KRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M  + + +D  + +L Y AI H+      + IA +   +   + KI+  L  A ++ET  
Sbjct: 1   MKHSVQFSD-AVHLLAYIAIFHDSNRLSSTDIAASIQTNPSNVRKIMCQLRDADLIETTN 59

Query: 59  GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
           G      L +    I+  D+ ++ +    + +   + +  C + G+  +  VL       
Sbjct: 60  GIP-KPCLVKDPHDISFFDIYQSLD-HAQLFQIDTNTESKCIVGGN--IQDVLSDEYLLL 115

Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
                + + Q S++ +++  S 
Sbjct: 116 QQVVEEKMKQISLDHVLKKISQ 137


>gi|317473485|ref|ZP_07932777.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
 gi|316898996|gb|EFV21018.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
          Length = 148

 Score = 68.4 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++   H        ++A   C +   + KI+  L K G++ T  G  GG      
Sbjct: 8   AVHALVFL-NHKRESVSSDKLAANICTNPARVRKIMGKLKKKGLISTKEGVVGGYLFDLD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
             ++T+ DV  A +  F V+  + S   D P    C + S +   ++  +  L Q
Sbjct: 67  PSKVTLYDVSSALDVPF-VSSSWRSGGSDLP----CLVASGMAGIMDDIYGTLDQ 116


>gi|163853446|ref|YP_001641489.1| hypothetical protein Mext_4048 [Methylobacterium extorquens PA1]
 gi|163665051|gb|ABY32418.1| protein of unknown function UPF0074 [Methylobacterium extorquens
           PA1]
          Length = 154

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   + P     +A     + + + +I+  L   G V + +G  GG R+    
Sbjct: 11  LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDF 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+  A       A    S    C +  +    +    R+A       L + ++ 
Sbjct: 70  GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|73661807|ref|YP_300588.1| hypothetical protein SSP0498 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494322|dbj|BAE17643.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 133

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +  +    I +L   A   + P     IA++   +   + KI + L     +++ +G  G
Sbjct: 1   MNTQFSVSIHILTLLATEKE-PVSSQYIADSINSNATLVRKICRYLRDGHYIQSSQGISG 59

Query: 63  GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
              L   A++I + D+ +    E+   A+        C +  +    L  +  +      
Sbjct: 60  -YSLSSSANEIHLGDLYQLIFSETMHFAKIHKDTNQHCHVGKNISHALDEIYSEVDTTII 118

Query: 120 DVLTQYSIECLVRN 133
           + L  Y+I+ ++ +
Sbjct: 119 NKLNTYTIQSVIDH 132


>gi|224476118|ref|YP_002633724.1| putative transcriptional regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420725|emb|CAL27539.1| putative transcriptional regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 154

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L +   H D       ++E  CI+ + L ++   LV+   VET+RG+ GG +    
Sbjct: 23  AVHFLAFLTKHADERFSSRALSELICINPVQLRRVTSQLVEHQYVETIRGKYGGYQANES 82

Query: 70  ADQITILDVVKA-----TEESFFVAECFASHKIDCP----LVGSCGLTSVLRKALNAFFD 120
                + D+ +      T+   +      + + DC     +  +  +     +AL     
Sbjct: 83  TATANLGDLFQIFTAHSTQGRLY----TGTKESDCEISQKIEDTMKVHHAKEQAL--LKQ 136

Query: 121 VLTQYSIECLVRN 133
               ++I+ ++  
Sbjct: 137 YYDDFTIQDILEE 149


>gi|73663658|ref|YP_302439.1| hypothetical protein SSP2349 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496173|dbj|BAE19494.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 144

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L +   H D     S++AE  C++ + L ++ + L     ++  RG+ GG +    
Sbjct: 8   AVHLLTFLVKHPDERYSSSELAERICVNPVQLRRVTRKLNDQQYLDASRGKYGGYQANDQ 67

Query: 70  ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCG-LTSVLRKALNAFF-DVLTQYS 126
             ++ + ++  A  E       F      DC +    G   S   K   A   D     +
Sbjct: 68  TMKVNLAELFVAFSEERSDGRLFTGDEGSDCEISREIGHTMSNFHKREQALLIDYYKSVT 127

Query: 127 IECLVRN 133
           I  ++  
Sbjct: 128 IHDVLNE 134


>gi|146302746|ref|YP_001197337.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146157164|gb|ABQ08018.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
           johnsoniae UW101]
          Length = 135

 Score = 68.1 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+ +    I +L       +       IA +  ++ + + K +  L    IVE+  G+ G
Sbjct: 2   LSGKFAITIHILTLLNKFPNDYLSSEFIAGSINLNPVLVRKEIANLKAHHIVESKEGKNG 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
           G +L   + ++T+ ++ + T E+  +         DCP+  +    L ++          
Sbjct: 62  GTKLAVDSSKLTLKEIFEMTFETIGLGYAKNQPNPDCPVGKNINQHLANLYADMNEKVSA 121

Query: 121 VLTQYSIEC 129
            L   S+E 
Sbjct: 122 QLEGISLED 130


>gi|218532306|ref|YP_002423122.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
           [Methylobacterium chloromethanicum CM4]
 gi|218524609|gb|ACK85194.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
           chloromethanicum CM4]
          Length = 154

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   + P     +A     + + + +I+  L   G V + +G  GG ++    
Sbjct: 11  LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+ +A       A    S    C +  +    +    R+A       L + ++ 
Sbjct: 70  GAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|228909201|ref|ZP_04073028.1| Rrf2 [Bacillus thuringiensis IBL 200]
 gi|228850445|gb|EEM95272.1| Rrf2 [Bacillus thuringiensis IBL 200]
          Length = 116

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R  D++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +    +C  S+         C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESNN-------QCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|2226146|emb|CAA74438.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 57

 Score = 67.7 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
            ECF ++K  C +   CGL  VL +AL A+  VL +Y++  LV+N+  I K+ 
Sbjct: 1   VECFDANKNLCVISPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLL 53


>gi|302384457|ref|YP_003820279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
 gi|302195085|gb|ADL02656.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
           saccharolyticum WM1]
          Length = 143

 Score = 67.7 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 18/146 (12%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  ++Y            ++A   C +   + K++  L KAGI+ T  G  G
Sbjct: 1   MTSEFAVAVHGIVYL-NQRKVTISSEELASNVCTNPARVRKVMAKLKKAGIITTKEGLEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    + + ++ +  +  A + +F V+  + S  +D P    C + S +   ++  +  L
Sbjct: 60  GYHFAKDSSEVNLKSICDALDVTF-VSSSWKSGNVDTP----CMIASGMSGVMDEIYGDL 114

Query: 123 T--------QYSIEC----LVRNRSS 136
                    + +I+     L++NR  
Sbjct: 115 NELCRRRMEEITIKDIQDKLIKNRPG 140


>gi|312868812|ref|ZP_07729001.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
 gi|311095655|gb|EFQ53910.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
          Length = 143

 Score = 67.3 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  + R    + +L+Y  I     N  S IA+    +   + +++  +VKAGI++   G 
Sbjct: 1   MKYSHRLSDAVHILVYLEILGS--NSSSAIADNVNSNPSLIRRLVASMVKAGILQ-RSGH 57

Query: 61  RG--GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC---GLTSVLRKAL 115
            G   ++L RPA Q+++LD+ +A E      +         PL   C    LT+   +  
Sbjct: 58  HGEITIKLTRPAAQVSLLDIYQAVESHQEFLDVDQEINHHHPL-SRCMPEVLTAEYERVQ 116

Query: 116 NAFFDVLTQYSIECLVRN-RSSIKK 139
            A    + Q  +  +V   R+ IK 
Sbjct: 117 QAAEQEMAQIKLATIVDKVRTKIKD 141


>gi|206576463|ref|YP_002239225.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
 gi|206565521|gb|ACI07297.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
          Length = 137

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +++  P  ++ I++   +S  +L +I + L    +V + RG  GG       D IT+ +V
Sbjct: 21 LYDGSPVSLTAISKESKLSTSYLEQIFKKLRAGNLVISQRGPGGGY--SPRGDDITVTEV 78

Query: 79 VKAT 82
          + A 
Sbjct: 79 ITAV 82


>gi|262280230|ref|ZP_06058014.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258008|gb|EEY76742.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 80

 Score = 67.3 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
           L   A    +  +V+  +    + EC   +   C L   CGL  +L +AL +F+  L QY
Sbjct: 1   LNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQY 57

Query: 126 SIECLVRNRSS 136
           ++  +++   S
Sbjct: 58  TLGEVLQQSKS 68


>gi|46190615|ref|ZP_00206526.1| COG1959: Predicted transcriptional regulator [Bifidobacterium
           longum DJO10A]
 gi|189438960|ref|YP_001954041.1| putative transcriptional regulator [Bifidobacterium longum DJO10A]
 gi|189427395|gb|ACD97543.1| Putative transcriptional regulator [Bifidobacterium longum DJO10A]
          Length = 106

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLV 102
           +  L +AG++   RG  GG  L R   +IT+LD+ +A E +    V       K  CP+ 
Sbjct: 1   MGALKRAGLITVARG-NGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGKHTCPVA 59

Query: 103 GSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136
            +  +  VL+ A      A  D + + ++  ++ +  +
Sbjct: 60  RN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 95


>gi|300174153|ref|YP_003773319.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
 gi|299888532|emb|CBL92500.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811]
          Length = 137

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++ +    I +L Y  I   +      IA +   +   +  ++  L  A ++ T +G 
Sbjct: 1   MRVSYKLSDAIHILAYIEIFKQHDLSSKAIAASIGSNASVVRNLMLDLRAANLLTTHQGI 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
                L +  + I+I  V  A   +  +         +C + G     L         A 
Sbjct: 61  AA-PELAKSPNDISIYAVYCAINMTHKLLHIDPKTNPNCLVGGHIQDTLNQFYDGIETAA 119

Query: 119 FDVLTQYSIECLVRN 133
           +D +   S+  ++++
Sbjct: 120 YDHMKTISLAHVIQD 134


>gi|329891241|ref|ZP_08269584.1| transcriptional regulator family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846542|gb|EGF96106.1| transcriptional regulator family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 158

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A         + +A +   + + + ++   L KAG++ T  G  GG  L R  + I + +
Sbjct: 22  AYAATEAEPSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLRRPEDIRLDE 81

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135
           V+KA      +    A  K  CP+       +   L  A  A    L++ +I  L+   S
Sbjct: 82  VLKAVNGCAQLGSPPAGAKG-CPVGEHIPRQVAKALTAADQAAGAALSKITIADLLAEDS 140

Query: 136 SIKKIF 141
            + + F
Sbjct: 141 EVLRPF 146


>gi|120611990|ref|YP_971668.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590454|gb|ABM33894.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
           AAC00-1]
          Length = 147

 Score = 66.9 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A H         +A+      + + + +  L +AGIV + +G  GG R+    
Sbjct: 11  LHALLHMAGHEGR-MTSDALAQCLGTHPVVVRRTMGYLREAGIVTSDKGHAGGWRIHADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+  + +A  E    A    +   +C +  +    L     +A        ++ ++ 
Sbjct: 70  GTVTLRQLHEALGEPAMFAIGNRNESPECLVEQAVNAALAGTFAEAEALLLKRFSEITLA 129

Query: 129 CL 130
            L
Sbjct: 130 DL 131


>gi|325263527|ref|ZP_08130261.1| transcriptional regulator superfamily [Clostridium sp. D5]
 gi|324031236|gb|EGB92517.1| transcriptional regulator superfamily [Clostridium sp. D5]
          Length = 137

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T      +  L++   H         +AE  C +   + KI+  L KAG+VET  G  G
Sbjct: 1   MTSEFTIAVHALVFL-NHKGTVYSSEGLAENICTNAARIRKIMVKLKKAGLVETKEGIEG 59

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    + +++  +  +  A E SF      +S          C + S +   +   ++ L
Sbjct: 60  GYLFVKNSEETDLCTIADALEFSF-----VSSGWKSGSSELKCLIASGMAGVMEDVYNDL 114

Query: 123 TQ--------YSIECL 130
            Q         ++  L
Sbjct: 115 DQQCRRRLREITVADL 130


>gi|23464707|ref|NP_695310.1| hypothetical protein BL0081 [Bifidobacterium longum NCC2705]
 gi|23325272|gb|AAN23946.1| conserved hypothetical protein in upf0074 [Bifidobacterium longum
           NCC2705]
          Length = 122

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FF 87
           ++E+   + + +   L  L +AG++   RG  GG  L     +IT+LD+ +A E +    
Sbjct: 2   LSESTGTNAVSIRNALGALKRAGLITVARG-TGGAELAHTPKEITLLDIHQAVESTNLDD 60

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136
           V          CP+  +  +  VL+ A      A  D + + ++  ++ +  +
Sbjct: 61  VIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 111


>gi|254421048|ref|ZP_05034772.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
 gi|196187225|gb|EDX82201.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
          Length = 156

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M  ++R       L Y A             + +A +   + + + ++   L KAG++ T
Sbjct: 1   MSDSQRFPVAAHALAYMAHKGAFSPAQAAPSALLAASVPTNPVVVRRVTALLAKAGLIAT 60

Query: 57  VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
             G  GG  L R  + I + +V+KA      +    A  K  CP+       +   L  A
Sbjct: 61  RPGATGGSWLLRQPEDIRLDEVLKAVNGCAHIGSPPAGAKG-CPISEHIPRQVGKALTAA 119

Query: 115 LNAFFDVLTQYSIECLVRNRS 135
             A  + L++ +I  L+    
Sbjct: 120 DEAATEALSKITIADLLDENP 140


>gi|254563375|ref|YP_003070470.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
           extorquens DM4]
 gi|254270653|emb|CAX26657.1| putative transcriptional regulator, BadM/Rrf2 family
           [Methylobacterium extorquens DM4]
          Length = 154

 Score = 66.9 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++ A   + P     +A     + + + +I+  L   G V + +G  GG ++    
Sbjct: 11  LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
             +T+ D+  A       A    S    C +  +    +    R+A       L + ++ 
Sbjct: 70  GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 ALSAD 134


>gi|262368151|pdb|3K69|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
           (Lp_0360) From Lactobacillus Plantarum At 1.95 A
           Resolution
          Length = 162

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  ++Y   H D      ++A++  ++ + +  IL  L K G +    G+ GG +L   
Sbjct: 14  AVHSILYLDAHRDSKVASRELAQSLHLNPVXIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73

Query: 70  ADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
                + D+   T         F              P+  +    LT +   A   +  
Sbjct: 74  LADXNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLFTVADRQYRA 133

Query: 121 VLTQYSIECL 130
              Q++   L
Sbjct: 134 YYHQFTXADL 143


>gi|260584236|ref|ZP_05851984.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
 gi|260158862|gb|EEW93930.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
          Length = 141

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           I  L Y ++H+D      Q+A   C + + + K++      G V+ V G  GG ++    
Sbjct: 9   IHCLTYLSVHHDRRFSSQQLAHNACSNPVIVRKVMSLASSKGYVDVVNGVNGGYKIQVDP 68

Query: 71  DQITILDVVKATEESFFVAECFASH-KIDCPLVGS-CGLTSVLRK--ALNAFFDVLTQYS 126
             I++ D+     E   + + + S     C +  + C + S L++    N       + S
Sbjct: 69  KDISLGDLFILVGEDKRLKKQYQSSLDEVCLVANNICSVFSDLQEEQIQNQV-KFYQKQS 127

Query: 127 IECLVRN 133
           I  +V+ 
Sbjct: 128 ILDIVKR 134


>gi|229156990|ref|ZP_04285071.1| Rrf2 [Bacillus cereus ATCC 4342]
 gi|228626480|gb|EEK83226.1| Rrf2 [Bacillus cereus ATCC 4342]
          Length = 116

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   ++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +    +C  S+         C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESNN-------QCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|16519776|ref|NP_443896.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii
           NGR234]
 gi|2496645|sp|P55486|Y4IC_RHISN RecName: Full=Uncharacterized protein y4iC
 gi|2182440|gb|AAB91698.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii
           NGR234]
          Length = 230

 Score = 66.5 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGR--RGGVRLCRPADQITILDVVKATEE 84
           +++IA    I + FL  IL  L     V  VR R    G+RL +PA +I I  V++A + 
Sbjct: 62  VTEIAMRNKIPKKFLDTILLELRN---VLCVRRRVHMAGIRLSKPASEIMIGQVIRALDG 118

Query: 85  SFFVAECFASHKIDC 99
                 C +     C
Sbjct: 119 PLAPIHCASRSAFAC 133


>gi|257437595|ref|ZP_05613350.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165]
 gi|257199902|gb|EEU98186.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165]
          Length = 150

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           MH++ +    +  L++ + + +        ++ +   + + +  IL  L K  I+    G
Sbjct: 1   MHISNKCSIAVHCLVFLSEYGEREKVTSELLSCSTGCNPVTIRNILSALKKGEIITVKPG 60

Query: 60  RRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             GG  L  P ++I +  +    +      +     S    CP+  + G  L        
Sbjct: 61  -TGGAELALPPEKIDLYRICSVVDPEAIDKMIGIHHSPSPFCPVGRNIGNVLGKTYDTLK 119

Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
           N     +   ++E ++ +   +
Sbjct: 120 NNLIASMKTITLEQILADYHEV 141


>gi|150398750|ref|YP_001329217.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030265|gb|ABR62382.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
           WSM419]
          Length = 152

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A          ++A     + + + + +  L +AG+V + +G  GG  L    
Sbjct: 11  LHALLHMAERK--TITSEELAACLSTNPVVVRRTMAGLREAGLVRSEKGHGGGWSLACDL 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD---------- 120
             +++ DV  A  E  F A    +    C          ++ +A+NA  D          
Sbjct: 69  ATVSLADVHAALGEPAFFAIGNRTESPGC----------LVEQAVNAAMDGALREAELLL 118

Query: 121 --VLTQYSIECLVRN 133
              L   S+  L R+
Sbjct: 119 LQRLGTISLADLSRD 133


>gi|228916014|ref|ZP_04079587.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928446|ref|ZP_04091486.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228934686|ref|ZP_04097519.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947024|ref|ZP_04109320.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228986485|ref|ZP_04146621.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229092366|ref|ZP_04223538.1| Rrf2 [Bacillus cereus Rock3-42]
 gi|229122928|ref|ZP_04252136.1| Rrf2 [Bacillus cereus 95/8201]
 gi|229197522|ref|ZP_04324248.1| Rrf2 [Bacillus cereus m1293]
 gi|228585967|gb|EEK44059.1| Rrf2 [Bacillus cereus m1293]
 gi|228660512|gb|EEL16144.1| Rrf2 [Bacillus cereus 95/8201]
 gi|228691068|gb|EEL44835.1| Rrf2 [Bacillus cereus Rock3-42]
 gi|228773306|gb|EEM21736.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228812598|gb|EEM58923.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824938|gb|EEM70737.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228831177|gb|EEM76774.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843609|gb|EEM88685.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 116

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R  D++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
            +    +C  S+   C +  +    L ++   A     + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|323219527|gb|EGA04012.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 63

 Score = 66.1 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
           V+  E    +  C +     C +  +C L   L KA+ +F   L  Y++  LV     + 
Sbjct: 2   VRELE-PLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLY 57

Query: 139 KIF 141
           K+ 
Sbjct: 58  KLL 60


>gi|325125820|gb|ADY85150.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 149

 Score = 66.1 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + K  +  I VL+  A+  D  P +   ++    +S+ +L KIL  L K G++     
Sbjct: 1   MKINKSVEQAIYVLLILALQKDGEPLKSRVLSTHLKVSDSYLKKILMKLKKGGLIAASAS 60

Query: 60  RRGGVRLCRPADQITILDVVKAT---EESFFVAE----CFASHKIDCPLVGSCGLTSVLR 112
           + GG +L  P   I+I DV  A    ++   ++      F              ++    
Sbjct: 61  KNGGYQLAWPIGAISIKDVFTALQLTDDQLELSHLAQYIFPDPNHVAQSEQE--ISQAFH 118

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           +A  AF+D L Q+ ++ L+++
Sbjct: 119 QAFAAFYDQLGQFKLDRLLKD 139


>gi|229012594|ref|ZP_04169768.1| Rrf2 [Bacillus mycoides DSM 2048]
 gi|229168130|ref|ZP_04295858.1| Rrf2 [Bacillus cereus AH621]
 gi|229174084|ref|ZP_04301620.1| Rrf2 [Bacillus cereus MM3]
 gi|228609416|gb|EEK66702.1| Rrf2 [Bacillus cereus MM3]
 gi|228615374|gb|EEK72471.1| Rrf2 [Bacillus cereus AH621]
 gi|228748754|gb|EEL98605.1| Rrf2 [Bacillus mycoides DSM 2048]
          Length = 116

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   +I + ++ + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNMYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +             CP     C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP---------KCPESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|227546815|ref|ZP_03976864.1| Rrf2 family transcriptional regulator [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227212777|gb|EEI80658.1| Rrf2 family transcriptional regulator [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 106

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLV 102
           +  L +AG++   RG  GG  L R   +IT+LD+ +A E +    V          CP+ 
Sbjct: 1   MGALKRAGLITVARG-TGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGNHTCPVA 59

Query: 103 GSCGLTSVLRKAL----NAFFDVLTQYSIECLVRNRSS 136
            +  +  VL+ A      A  D + + ++  ++ +  +
Sbjct: 60  RN--IHDVLKDAYAPVAKAMSDSMREVTLANMLADYRN 95


>gi|229185625|ref|ZP_04312804.1| Rrf2 [Bacillus cereus BGSC 6E1]
 gi|228597855|gb|EEK55496.1| Rrf2 [Bacillus cereus BGSC 6E1]
          Length = 116

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   ++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
            +    +C  S+   C +  +    L ++   A     + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|262066034|ref|ZP_06025646.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291380285|gb|EFE87803.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 140

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            +    + +L Y     D       +A++   +   + KIL  L    I+E+ +G++G +
Sbjct: 3   TKFSIALHILAYI-EETDNTVTSELLAKSVGTNASHIRKILTLLKDVNIIESQQGKKG-I 60

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
            L   A+++++  +         +     +   DCP+  +    L  +  ++       L
Sbjct: 61  ALKIKANELSLDKIYLGVYPEKELLHIHDTANQDCPVGATIKEALLPIFEESERQLILNL 120

Query: 123 TQYSIECLVRN 133
              +++ L+ +
Sbjct: 121 KSKTLKSLIED 131


>gi|228901883|ref|ZP_04066051.1| Rrf2 [Bacillus thuringiensis IBL 4222]
 gi|228857735|gb|EEN02227.1| Rrf2 [Bacillus thuringiensis IBL 4222]
          Length = 116

 Score = 65.7 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 19/118 (16%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   ++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLGEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF--------DVLTQYSIECLVR 132
            +             CP     C + S +RK L A F        + L  Y+++ +V 
Sbjct: 62  GALQP---------KCPESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|170769186|ref|ZP_02903639.1| tranScriptional repressor of the iscrsua operon [Escherichia
           albertii TW07627]
 gi|194436072|ref|ZP_03068174.1| transcriptional regulator [Escherichia coli 101-1]
 gi|170121838|gb|EDS90769.1| tranScriptional repressor of the iscrsua operon [Escherichia
           albertii TW07627]
 gi|194424800|gb|EDX40785.1| transcriptional regulator [Escherichia coli 101-1]
          Length = 119

 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 4   TKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           ++R    + V++ +   +   P  + Q+++   +S  +L +I + L ++ +V+  RG  G
Sbjct: 8   SQRASVAVMVMIKFVKQYTGKPISLRQLSKET-VSLSYLEQIFRYLRESSLVKATRGPGG 66

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           G    +  +  ++ D+V+A        +C   +                    +     L
Sbjct: 67  GYIPTK--ENYSVGDIVRAM-------KCSGLYT------------------QHVILAAL 99

Query: 123 TQYSIECLVRN 133
              S+  L  +
Sbjct: 100 DNISLTSLQED 110


>gi|229121703|ref|ZP_04250926.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201]
 gi|228661747|gb|EEL17364.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201]
          Length = 116

 Score = 65.4 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
              Q+++  C++ + + K+++ L K G++ T  G  GG        ++T+  + + T  +
Sbjct: 3   TSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFTGGYIFKHNPKEVTLGQIYELTSNN 62

Query: 86  FFVAECFASH-KIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
              +   + H + DC +    G  +T +  +    +   L   +++ +V  
Sbjct: 63  SLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCYKLFLDGINVQDVVEK 113


>gi|229097857|ref|ZP_04228809.1| Rrf2 [Bacillus cereus Rock3-29]
 gi|229103939|ref|ZP_04234617.1| Rrf2 [Bacillus cereus Rock3-28]
 gi|229116864|ref|ZP_04246248.1| Rrf2 [Bacillus cereus Rock1-3]
 gi|228666696|gb|EEL22154.1| Rrf2 [Bacillus cereus Rock1-3]
 gi|228679507|gb|EEL33706.1| Rrf2 [Bacillus cereus Rock3-28]
 gi|228685533|gb|EEL39459.1| Rrf2 [Bacillus cereus Rock3-29]
          Length = 116

 Score = 65.4 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+  +  + + K+L  L K   +++  G  GG    R   ++ +  + + T E
Sbjct: 2   STSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARDLSEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
            +    +C  S+   C +  +    L ++   A     + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|254462391|ref|ZP_05075807.1| Rrf2 family protein [Rhodobacterales bacterium HTCC2083]
 gi|206678980|gb|EDZ43467.1| Rrf2 family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 69

 Score = 65.0 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
           ++  E    + EC       C L  SCGLTS LR A +AF+  L+  ++  L +N + + 
Sbjct: 1   MRDLESQTELVECLRPDGGSCVLAPSCGLTSALRVAQDAFYTSLSTMTLADLTKNNAPMA 60

Query: 139 KIF 141
           ++ 
Sbjct: 61  RLL 63


>gi|227903951|ref|ZP_04021756.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
           4796]
 gi|227868342|gb|EEJ75763.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
           4796]
          Length = 119

 Score = 64.6 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 34  CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAE 90
             +S+ +L KIL  L    ++     ++ G +L RP D+I++ DV+ A E          
Sbjct: 1   MGVSDSYLKKILMMLKHNELITASASKKVGYQLARPIDEISLKDVLYALELNHNQIEFNH 60

Query: 91  CFAS--HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
              +     D        + + L+  L++F+D L +  +  L+++
Sbjct: 61  LANNIFDDQDHVEESENKIINTLQAGLSSFYDELDELKLSDLLKD 105


>gi|218663324|ref|ZP_03519254.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium
          etli IE4771]
          Length = 183

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 3  LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L  + ++ +      A +          +AE   + + +L K LQ L +A +V+T  G  
Sbjct: 4  LKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPS 63

Query: 62 GGVRLCRP 69
          GG RL RP
Sbjct: 64 GGYRLARP 71


>gi|299782698|gb|ADJ40696.1| Transcriptional regulator [Lactobacillus fermentum CECT 5716]
          Length = 97

 Score = 64.2 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           +  L KAG++ T  G      L +  ++IT+LDV +A E+ + +         DCP+  +
Sbjct: 1   MSRLTKAGLLVTHPG-TASPALAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKN 59

Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
               LT    K   A    + + ++  +  N
Sbjct: 60  IQGVLTQEFAKVQAAAEAAMQEITLAEITAN 90


>gi|229140014|ref|ZP_04268577.1| Rrf2 [Bacillus cereus BDRD-ST26]
 gi|228643420|gb|EEK99688.1| Rrf2 [Bacillus cereus BDRD-ST26]
          Length = 116

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  + I+E+ C+  + + K+L  L K   +++  G  GG    R  D++ +  + + T E
Sbjct: 2   STSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
            +    +C  S+   C +  +    L ++   A     + L  Y+++ +V 
Sbjct: 62  GALQP-KCPESND-QCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|325143452|gb|EGC65778.1| transcriptional regulator family protein [Neisseria meningitidis
          M01-240013]
          Length = 52

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKA 51
          M LT +  + +  ++  A++      ++S I+E   IS  +L ++   L +A
Sbjct: 1  MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRA 52


>gi|307243949|ref|ZP_07526073.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
 gi|306492666|gb|EFM64695.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
          Length = 141

 Score = 64.2 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L++  +H        +++   C + + + K++    K GIV T  G  GG  +   
Sbjct: 7   ALHALVFL-MHAGESKSSEELSTNLCTNPVRIRKVMAKCKKYGIVTTKAGVNGGYMVADK 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121
            + I +  +  A            S      L   C + S + + ++  F         +
Sbjct: 66  GESINLKHIYDAV-----SVPIIESKWHSGDLDSDCAICSGMAQYVDELFFKMNEECVKM 120

Query: 122 LTQYSIECLVRNRSSIKKI 140
           L    +  +      IK++
Sbjct: 121 LETIKLCDVEERLGQIKEL 139


>gi|148543420|ref|YP_001270790.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus reuteri
           DSM 20016]
 gi|227363569|ref|ZP_03847686.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325681763|ref|ZP_08161282.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|148530454|gb|ABQ82453.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
           DSM 20016]
 gi|227071365|gb|EEI09671.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978854|gb|EGC15802.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 106

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           +  L KAG++ TV G      L +  + I++ D+  A E    +          C + G+
Sbjct: 1   MSALNKAGLINTVHGAA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGN 59

Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
               L    ++A  A    L + S++ ++      + I +A
Sbjct: 60  IQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 100


>gi|291532973|emb|CBL06086.1| hypothetical protein MHY_11290 [Megamonas hypermegale ART12/1]
          Length = 62

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           +++  E S     C      +C     C    +  K  +A  +V+   ++  L+  + ++
Sbjct: 2   ILRLIEGSLAPVACLDDDINNCTRADRCPTLILWEKLYDAISEVVDNITLADLISWQKNM 61

Query: 138 K 138
           K
Sbjct: 62  K 62


>gi|184152829|ref|YP_001841170.1| hypothetical protein LAR_0174 [Lactobacillus reuteri JCM 1112]
 gi|183224173|dbj|BAG24690.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
          Length = 107

 Score = 63.8 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           +  L KAG++ TV G      L +  + I++ D+  A E    +          C + G+
Sbjct: 2   MSALNKAGLINTVHGAA-DPALAKSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGN 60

Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
               L    ++A  A    L + S++ ++      + I +A
Sbjct: 61  IQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 101


>gi|310815154|ref|YP_003963118.1| Putative HTH-type transcriptional regulator ywnA
           [Ketogulonicigenium vulgare Y25]
 gi|308753889|gb|ADO41818.1| Putative HTH-type transcriptional regulator ywnA
           [Ketogulonicigenium vulgare Y25]
          Length = 147

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A H D P     I +    + + + + +  L +AG+V   RG  GG R+    
Sbjct: 11  LHALLHMAEH-DGPMTSDAIGQCLGTNPVVVRRTMGLLREAGLVSAERGHAGGWRISADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           +++T+ D+  A  E    A         C +  S  + + L +A      +L
Sbjct: 70  NRVTLRDLHDALGEPAVFAIGNRHENPACLVEQS--VNAALDRAFTEAEALL 119


>gi|186473779|ref|YP_001861121.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196111|gb|ACC74075.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
           STM815]
          Length = 136

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 36  ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
            + + + +++  L  +G+V +  GR GG  +   A+ IT  DV +A E     A   ++ 
Sbjct: 31  TNAVVVRRVMGRLRDSGLVTSTGGREGGWSVACAAEMITARDVFEALESENVFAIGASAD 90

Query: 96  KIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
              CP+  +    L+  L  A     +     ++E L R
Sbjct: 91  HPHCPVEKAVNAKLSIALDNAQQKLLENPGGTTLEELAR 129


>gi|240140866|ref|YP_002965346.1| putative transcriptional regulator, BadM/Rrf2 family
           [Methylobacterium extorquens AM1]
 gi|240010843|gb|ACS42069.1| putative transcriptional regulator, BadM/Rrf2 family
           [Methylobacterium extorquens AM1]
          Length = 142

 Score = 63.0 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L++ A   + P     +A     + + + +I+  L   G V + +G  GG ++      
Sbjct: 1   MLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDFGA 59

Query: 73  ITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECL 130
           +T+ D+  A       A    S    C +  +    +    R+A       L + ++  L
Sbjct: 60  VTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLAAL 119

Query: 131 VRN 133
             +
Sbjct: 120 SAD 122


>gi|223042722|ref|ZP_03612770.1| transcriptional regulator superfamily [Staphylococcus capitis SK14]
 gi|222443576|gb|EEE49673.1| transcriptional regulator superfamily [Staphylococcus capitis SK14]
          Length = 143

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H +      ++AE  C++ + L +++  L    ++ TVRG+ GG +  + 
Sbjct: 8   AVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGKDGGYKANQY 67

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV-----LTQ 124
              + + ++ +     F +A               C ++  + + +  + D      L  
Sbjct: 68  TSTVNLAELYQ----QFVLARDNNQRVYTGDRNSHCDISKHIAQIMARYRDEEIQLILNF 123

Query: 125 Y---SIECLVRN 133
           Y   +I+ ++ +
Sbjct: 124 YRNKTIQDVLND 135


>gi|229162267|ref|ZP_04290234.1| Rrf2 [Bacillus cereus R309803]
 gi|228621194|gb|EEK78053.1| Rrf2 [Bacillus cereus R309803]
          Length = 116

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT-E 83
           +  S I+E+  +  + + K+L  L K   +++  G  GG        ++ + ++ + T E
Sbjct: 2   STSSAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFACDLSEVNLWNIYQITSE 61

Query: 84  ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
            +    +C       C +  +    L ++   A     + L  Y+++ +V 
Sbjct: 62  GALQP-KC-PEANGQCIVGSNMRTVLFTIFLGAEEHLGEYLKNYTMKEVVD 110


>gi|289423480|ref|ZP_06425282.1| putative transcriptional regulator [Peptostreptococcus anaerobius
           653-L]
 gi|289156114|gb|EFD04777.1| putative transcriptional regulator [Peptostreptococcus anaerobius
           653-L]
          Length = 145

 Score = 62.7 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I  L   A H+        +A   C + + + K++    +A +VET  G  GG ++   
Sbjct: 7   AIHALCLLA-HDFKSWSSEALANNLCTNPVRIRKVMAKCKRANLVETKAGVNGGYQIVEN 65

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT------ 123
              I +  +  A  +         S      +   C   S + + ++  F  L       
Sbjct: 66  GKNINLKQIYDAIGQPI-----VESKWHSGDIDSECIYASGMSEYVDNLFAYLNEEVVFL 120

Query: 124 --QYSIECL 130
             + S+  +
Sbjct: 121 LEKISLGDI 129


>gi|257790392|ref|YP_003180998.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
 gi|257474289|gb|ACV54609.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
           2243]
          Length = 154

 Score = 62.3 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H         +A+  C +   + K++ PL +AG V T  G  GG R    
Sbjct: 8   AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121
           A  + +  V  A            S      +   C + S +   ++  F        + 
Sbjct: 67  ASAVDLHMVADALN-----IRFVQSGWHSGDMDMKCLVASGMAGVMDDIFLDLDERCRER 121

Query: 122 LTQYSIECL 130
           L Q SI  +
Sbjct: 122 LAQISIADI 130


>gi|317488806|ref|ZP_07947339.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325833719|ref|ZP_08166134.1| transcriptional regulator [Eggerthella sp. HGA1]
 gi|316912111|gb|EFV33687.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
 gi|325485259|gb|EGC87729.1| transcriptional regulator [Eggerthella sp. HGA1]
          Length = 154

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 14/129 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H         +A+  C +   + K++ PL +AG V T  G  GG R    
Sbjct: 8   AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--------DV 121
           A  + +  V  A            S      +   C + S +   ++  F        + 
Sbjct: 67  ASAVDLHMVADALN-----IRFVQSGWHSGDMDMKCLVASGMAGIMDDIFLDLDERCRER 121

Query: 122 LTQYSIECL 130
           L Q SI  +
Sbjct: 122 LAQISIADI 130


>gi|316935256|ref|YP_004110238.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
           palustris DX-1]
 gi|315602970|gb|ADU45505.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
           palustris DX-1]
          Length = 146

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++ A   + P     +A   C + + + + +  L  AG+V + RG  GG ++    
Sbjct: 11  LHALLHMAERGE-PMTSETLAACMCTNPVVVRRTMGLLRDAGLVASARGPSGGWQIVADL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
           + +T+ D+  A  E    A         C +  +    L      A     D L + ++ 
Sbjct: 70  NAVTLRDLYDALGEPTVFAIGNRHEAPQCLVEQAVNAALDDAFADAEALLLDRLGKITLA 129

Query: 129 CLVRN 133
            L  +
Sbjct: 130 RLSAD 134


>gi|242372820|ref|ZP_04818394.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349472|gb|EES41073.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 143

 Score = 61.9 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            I VL +   H D      ++AE  C++ + L +++  L     + TVRG+ GG +  + 
Sbjct: 8   AIHVLTFLTKHKDEKFNSKELAELTCLNPVQLRRVVSVLSDQHYITTVRGKGGGYQSNQH 67

Query: 70  ADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123
              + +  + +      E    +          C +       ++    + +    +   
Sbjct: 68  TASVNLATLYQQFVLNKESKHRIYT--GDTSSHCDISKHIAHTMSDYYDEEIQLILNFYR 125

Query: 124 QYSIECLVRN 133
             +I+ ++ +
Sbjct: 126 NKTIQDVLND 135


>gi|227824338|ref|ZP_03989170.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904837|gb|EEH90755.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 166

 Score = 61.5 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+Y   H        ++A   C + + + KI+  L K G+VET  G  GG      
Sbjct: 8   AVHALVYL-THLGTLVSSDELARNICTNPVRVRKIMGKLKKLGLVETKEGHVGGYAAVSG 66

Query: 70  ADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF----FDVLTQ 124
            ++ T+L +      SF   +    +  +DC +    G++ V  +          + L  
Sbjct: 67  TEKATLLTIADGLGISFVDTKWRSGTEDMDCFISS--GMSLVFDRLYEEMDRACREELKH 124

Query: 125 YSIECLVRN 133
            ++E + + 
Sbjct: 125 ITLESIAQE 133


>gi|317404221|gb|EFV84659.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 147

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL++  +          I +    + +F  + +  L  AG V +  G  GG  L    
Sbjct: 11  LHVLVHMHLRGGA-TTSQTIGQMLHTNPVFARRTMSVLRDAGFVTSTGGPGGGWTLACEL 69

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           D++T+ DV  A   +   A   A     CP+  +
Sbjct: 70  DRLTVGDVCDAIAHATLFAVGPAQDNAACPVEAA 103


>gi|167648721|ref|YP_001686384.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
 gi|167351151|gb|ABZ73886.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
          Length = 145

 Score = 61.5 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           CA   D     +++A +   + + + ++   L KAG++    G  GG  L +P + IT+ 
Sbjct: 21  CAFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPPEAITLD 80

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLVR 132
            V++A      +          CP+       +   +  A  A  D L+Q S+  L+ 
Sbjct: 81  LVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRGAMIAADTAVADRLSQISVADLLN 137


>gi|164688267|ref|ZP_02212295.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM
           16795]
 gi|164602680|gb|EDQ96145.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM
           16795]
          Length = 139

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +++R    ++ +++ A+++D        I++    + + +  IL  L K   +     
Sbjct: 1   MKVSRRFQLTVQTVLFIAVYSDKKEMTCENISKEMKCNPVVIKNILNILYKNNFLT---- 56

Query: 60  RRGG----VRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLR 112
            +G     +RL R    IT+ D+ K T+E       C    +I  P+V      L+    
Sbjct: 57  -KGSSISNIRLKRNIKDITLWDIYKITDEVDINNIFCSDDLQIASPIVSDLPELLSPAFG 115

Query: 113 KALNAFFDVLTQYSIECLVRN 133
           + +N+  D+L+  S++ L++ 
Sbjct: 116 EIMNSIKDILSTVSVDSLLKK 136


>gi|325846523|ref|ZP_08169438.1| HTH-type transcriptional regulator CymR domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481281|gb|EGC84322.1| HTH-type transcriptional regulator CymR domain protein
          [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 53

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVK 50
          M L+ R  YG+R + Y A + D     +S I+    + E +L ++++ L K
Sbjct: 1  MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKK 51


>gi|49482825|ref|YP_040049.1| hypothetical protein SAR0601 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424713|ref|ZP_05601140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427382|ref|ZP_05603781.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430014|ref|ZP_05606398.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432716|ref|ZP_05609076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435620|ref|ZP_05611668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903186|ref|ZP_06311077.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904973|ref|ZP_06312831.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907930|ref|ZP_06315764.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910238|ref|ZP_06318042.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913431|ref|ZP_06321220.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918384|ref|ZP_06326121.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923349|ref|ZP_06331029.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957396|ref|ZP_06374849.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500478|ref|ZP_06666329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509423|ref|ZP_06668134.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293524010|ref|ZP_06670697.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427137|ref|ZP_06819773.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590514|ref|ZP_06949153.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|49240954|emb|CAG39621.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272283|gb|EEV04406.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275575|gb|EEV07048.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279211|gb|EEV09812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282131|gb|EEV12266.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284811|gb|EEV14930.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314217|gb|EFB44607.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317518|gb|EFB47890.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322463|gb|EFB52785.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325630|gb|EFB55938.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282328175|gb|EFB58454.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331798|gb|EFB61309.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596141|gb|EFC01102.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790847|gb|EFC29662.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920973|gb|EFD98034.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095483|gb|EFE25744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467520|gb|EFF10035.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128925|gb|EFG58555.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576813|gb|EFH95528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438984|gb|ADQ78055.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315193964|gb|EFU24358.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 146

 Score = 61.1 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   ++ T+RG+ GG      
Sbjct: 8   AVHVLTFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLANDR 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +   + 
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNNIINFYKEK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|228924846|ref|ZP_04088001.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834764|gb|EEM80248.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 144

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRG 59
           M ++       ++L     +   P     I     I    +  IL  L   GI+    +G
Sbjct: 1   MKISISLTVASQILSILKKNPLTPYDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNHKG 60

Query: 60  RRGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
           +  G  L +   +IT+LDV ++    E          + K +CP+  +    L  +L +A
Sbjct: 61  K--GWYLIKDVHRITLLDVYRSVCRVEGEICSI--HENLKFNCPIGANIQFVLEVILIQA 116

Query: 115 LNAFFDVLTQYSIECLV 131
            +    +L   ++  L+
Sbjct: 117 QDEMEQILENVTMGQLI 133


>gi|218680925|ref|ZP_03528822.1| hypothetical protein RetlC8_19586 [Rhizobium etli CIAT 894]
          Length = 158

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           + R    +  L   AI+   P R   +A +   +   +  +L  L  AG      G  GG
Sbjct: 16  STRFVVAVHTLAILAINEGRPVRSEDLAFSANTNPTVIRSLLSGLADAGFTTAQLGAGGG 75

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
             L +    I +LDV +A E+S   +   +     C +  +    L   L KA  A    
Sbjct: 76  ALLAKKPSHIALLDVYRAVEDSELFSMHRSPPNSVCVVGRNIQNVLRPTLDKAQAALEAE 135

Query: 122 LTQYSIECLVRN 133
           L   ++  +   
Sbjct: 136 LACVTVADIAAE 147


>gi|282915920|ref|ZP_06323685.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282320216|gb|EFB50561.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp.
           aureus D139]
          Length = 146

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+L  + +  + VL +   H+      S +AE  C++ + L ++   LV   ++ T+RG+
Sbjct: 1   MNL--KFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58

Query: 61  RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
            GG      +  +++  + K    E+              C +  +   T     +   N
Sbjct: 59  DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118

Query: 117 AFFDVLTQYSIECLVRN 133
              +   + +I+ ++ +
Sbjct: 119 IIINFYKEKTIKDVIED 135


>gi|15923585|ref|NP_371119.1| hypothetical protein SAV0595 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926273|ref|NP_373806.1| hypothetical protein SA0552 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267055|ref|YP_001245998.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393103|ref|YP_001315778.1| hypothetical protein SaurJH1_0633 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978924|ref|YP_001441183.1| hypothetical protein SAHV_0593 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316612|ref|ZP_04839825.1| hypothetical protein SauraC_10785 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731206|ref|ZP_04865371.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255005388|ref|ZP_05143989.2| hypothetical protein SauraM_02935 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258420350|ref|ZP_05683295.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258436521|ref|ZP_05689179.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258442345|ref|ZP_05691108.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446283|ref|ZP_05694441.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|258450058|ref|ZP_05698155.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258455097|ref|ZP_05703059.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|269202216|ref|YP_003281485.1| hypothetical protein SAAV_0558 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895034|ref|ZP_06303256.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
 gi|295406974|ref|ZP_06816777.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
 gi|297246135|ref|ZP_06929990.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
 gi|13700487|dbj|BAB41784.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
 gi|14246363|dbj|BAB56757.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740124|gb|ABQ48422.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945555|gb|ABR51491.1| protein of unknown function UPF0074 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721059|dbj|BAF77476.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724947|gb|EES93676.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257843664|gb|EEV68068.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257848792|gb|EEV72778.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852074|gb|EEV76006.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854877|gb|EEV77822.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|257856677|gb|EEV79581.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257862737|gb|EEV85503.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|262074506|gb|ACY10479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282762617|gb|EFC02755.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
 gi|285816296|gb|ADC36783.1| hypothetical protein SA2981_0572 [Staphylococcus aureus 04-02981]
 gi|294968205|gb|EFG44231.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
 gi|297176981|gb|EFH36237.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
 gi|312829090|emb|CBX33932.1| transcriptional regulator family protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315128897|gb|EFT84895.1| hypothetical protein CGSSa03_00785 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724366|gb|EGG60877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           21172]
          Length = 146

 Score = 60.7 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +   + 
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNEK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|323463348|gb|ADX75501.1| transcriptional regulator, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 140

 Score = 60.3 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H         +AE  C++ + L +++  L + G V+ VRG++GG      
Sbjct: 8   AVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQKGGYLATED 67

Query: 70  ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124
              I +  + +           F  +  + C +     +  V+            +    
Sbjct: 68  GLAIKLEPLFRLFNRPENHGRLFTGNPSMHCKISQ--KIEQVMYGHYLIEQEIIANYYQG 125

Query: 125 YSIECLVRNRSSIK 138
            +I  ++     ++
Sbjct: 126 QTIGDILNQIREVE 139


>gi|319893600|ref|YP_004150475.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163296|gb|ADV06839.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 141

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H         +AE  C++ + L +++  L + G V+ VRG++GG      
Sbjct: 9   AVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQKGGYLATED 68

Query: 70  ADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKA----LNAFFDVLTQ 124
              I +  + +           F  +  + C +     +  V+            +    
Sbjct: 69  GLAIKLEPLFRLFNRPENHGRLFTGNPSMHCKISQ--KIEQVMYGHYLIEQEIIANYYQG 126

Query: 125 YSIECLVRNRSSIK 138
            +I  ++     ++
Sbjct: 127 QTIGDILNQIREVE 140


>gi|57650052|ref|YP_185526.1| hypothetical protein SACOL0641 [Staphylococcus aureus subsp. aureus
           COL]
 gi|151220770|ref|YP_001331592.1| hypothetical protein NWMN_0558 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508834|ref|YP_001574493.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141885|ref|ZP_03566378.1| hypothetical protein SauraJ_09680 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253732966|ref|ZP_04867131.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258450951|ref|ZP_05699003.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|284023610|ref|ZP_06378008.1| hypothetical protein Saura13_03432 [Staphylococcus aureus subsp.
           aureus 132]
 gi|304381805|ref|ZP_07364452.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57284238|gb|AAW36332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|150373570|dbj|BAF66830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367643|gb|ABX28614.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253729146|gb|EES97875.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861371|gb|EEV84180.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|269940167|emb|CBI48543.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302750485|gb|ADL64662.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339591|gb|EFM05538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315196522|gb|EFU26871.1| hypothetical protein CGSSa01_02231 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139838|gb|EFW31700.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|329313316|gb|AEB87729.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329729739|gb|EGG66140.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           21193]
 gi|329729854|gb|EGG66246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           21189]
          Length = 146

 Score = 60.3 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +     
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|213028526|ref|ZP_03342973.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 48

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           C +  +C L   L KA+ +F   L  Y++  LV     + K+ 
Sbjct: 3   CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 45


>gi|294849241|ref|ZP_06789984.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
 gi|294823773|gb|EFG40199.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
          Length = 146

 Score = 60.0 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +     
Sbjct: 68  SADVSLATLYKHFVLEKERHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|302332307|gb|ADL22500.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 146

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +   + 
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|70727330|ref|YP_254246.1| hypothetical protein SH2331 [Staphylococcus haemolyticus JCSC1435]
 gi|68448056|dbj|BAE05640.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 146

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H++       +AE  C++ + L ++   L     ++++RG+ GG R    
Sbjct: 8   AVHVLSFLTKHSEEQFNSQDLAELTCLNPVQLRRVTTTLNNQQYIDSIRGKGGGYRANAH 67

Query: 70  ADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA----FFDVLT 123
              IT+  + +         +     S +  C +  +   T  + K          +   
Sbjct: 68  TPTITLDTLYQLFVLDKLPTQRIFTGSEESHCTISRNIATT--MNKYKEQETALALNFYR 125

Query: 124 QYSIECLVRN 133
             +I  +++ 
Sbjct: 126 NLTINDVIKE 135


>gi|258422782|ref|ZP_05685685.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257847013|gb|EEV71024.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|283469886|emb|CAQ49097.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 146

 Score = 59.2 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDR 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +   + 
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|254498599|ref|ZP_05111319.1| truncated rrf2 family protein [Legionella drancourtii LLAP12]
 gi|254352190|gb|EET11005.1| truncated rrf2 family protein [Legionella drancourtii LLAP12]
          Length = 87

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           RPA +I++  ++ A EE     EC +    DC L G C +    R    A    L   S+
Sbjct: 3   RPATEISVSQIIFALEEHRGFTEC-SLQPNDCSLQGVCTIQGNWRLISQAIETALDSVSL 61

Query: 128 ECLVRNRSSIKKI 140
           + L +     + I
Sbjct: 62  DTLAKPTLQARDI 74


>gi|82750300|ref|YP_416041.1| hypothetical protein SAB0545c [Staphylococcus aureus RF122]
 gi|283769750|ref|ZP_06342642.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
 gi|82655831|emb|CAI80233.1| probable DNA-binding protein [Staphylococcus aureus RF122]
 gi|283459897|gb|EFC06987.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
 gi|298693925|gb|ADI97147.1| hypothetical protein SAOV_0629c [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439450|gb|EGA97172.1| hypothetical protein SAO11_1751 [Staphylococcus aureus O11]
 gi|323442133|gb|EGA99767.1| hypothetical protein SAO46_1970 [Staphylococcus aureus O46]
          Length = 146

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   ++ T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLANDR 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +   + 
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYKEK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|21282279|ref|NP_645367.1| hypothetical protein MW0550 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485461|ref|YP_042682.1| hypothetical protein SAS0554 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208689|ref|ZP_06925117.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912780|ref|ZP_07130222.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21203716|dbj|BAB94415.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49243904|emb|CAG42329.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886634|gb|EFH25539.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300885884|gb|EFK81087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 146

 Score = 58.8 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   ++ T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLSNDR 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQY 125
           +  +++  + K    E+              C +  +   T     +   N   +     
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYEQDEQNIIINFYKGK 127

Query: 126 SIECLVRN 133
           +I+ ++ +
Sbjct: 128 TIKDVIED 135


>gi|238026675|ref|YP_002910906.1| hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1]
 gi|237875869|gb|ACR28202.1| Hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1]
          Length = 145

 Score = 58.8 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M+ + R  + + VL   +     P     IA +   +   + ++L  L  AG+  +  G 
Sbjct: 1   MNTSSRFAFAVHVLALLSQQEGVPLSSEIIAGSVNTNPALIRRLLLRLAAAGLTRSQLGA 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALN 116
            GG  L R  D IT+LDV +A +++   A    +   DC +     + SVL      A  
Sbjct: 61  GGGALLAREPDSITLLDVYRAVDDAQLFALHREAPNPDCLVGRH--IQSVLSVYIDDARR 118

Query: 117 AFFDVLTQYSIECLVRN 133
           A    L   ++  +  +
Sbjct: 119 AMEASLAARTLADVTAD 135


>gi|229073669|ref|ZP_04206783.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|228709456|gb|EEL61516.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
          Length = 104

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103
           L K+GIV   +G+ G   L +    IT+LDV +A E  E   +     +    CP+    
Sbjct: 3   LKKSGIVHVSQGKNG-AHLFKAPQFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 61

Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131
              L  +L ++     + L   +++ +V
Sbjct: 62  HMVLELILIQSQEKMEEFLQNVTMQQVV 89


>gi|205372678|ref|ZP_03225489.1| transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 89

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           +  LVKA +++   GR GG  L +  + IT+ +V +A     F          +C     
Sbjct: 1   MTHLVKAKLIQAKEGRDGGYYLMKSPEDITLFEVYEAMRAEPFPRGFLDVQSKECFAPS- 59

Query: 105 CGLTSVLRKALNAF----FDVLTQYSIECLV 131
                 L    +         L + ++  L+
Sbjct: 60  --TQDALFGLRDEMEGWLIAGLKEKTLADLL 88


>gi|255656743|ref|ZP_05402152.1| hypothetical protein CdifQCD-2_13861 [Clostridium difficile
           QCD-23m63]
 gi|296452428|ref|ZP_06894129.1| transcriptional regulator superfamily protein [Clostridium
           difficile NAP08]
 gi|296877777|ref|ZP_06901803.1| transcriptional regulator superfamily protein [Clostridium
           difficile NAP07]
 gi|296258758|gb|EFH05652.1| transcriptional regulator superfamily protein [Clostridium
           difficile NAP08]
 gi|296431228|gb|EFH17049.1| transcriptional regulator superfamily protein [Clostridium
           difficile NAP07]
          Length = 132

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--G 59
           +++  DY IR++     +  D P     I +   I  L L+++L+ L    I+   +  G
Sbjct: 2   ISEDVDYSIRIIRAIFNNGEDNPIDAKMILKNEEIPTLTLYRLLRKLCANNILTFNKEDG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
           ++    L    D I++  +V+A +   ++ +C  + S+  +C  +  C +   L +    
Sbjct: 62  KK--YMLNVSLDTISLRTIVEAIDGKIYINKCTRYVSNCSNC--LKGCKVNRELLEIEKE 117

Query: 118 FFDVLTQYSIECLVR 132
            + +L++ SI  ++ 
Sbjct: 118 IYKLLSRKSIRQILE 132


>gi|149204175|ref|ZP_01881143.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius
           sp. TM1035]
 gi|149142617|gb|EDM30662.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius
           sp. TM1035]
          Length = 131

 Score = 58.4 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A H + P     I++    + + + + +  L +AGIV + RG  GG R+    + +T+ 
Sbjct: 1   MAEH-EGPMTSEAISQCMGTNPVVVRRTMAFLREAGIVSSARGHAGGWRITADLEVVTLH 59

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
            + KA  E    A    +    C +  S    L   L +A     +     ++  L  +
Sbjct: 60  QLHKALGEPAIFAIGNRTENPFCLVEQSVNAALEHTLEEAEALLLERFAHVTLADLAAD 118


>gi|229073754|ref|ZP_04206856.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
 gi|228709362|gb|EEL61434.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
          Length = 144

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M +        ++L     +   P     I     I    +  IL  L   GI+     +
Sbjct: 1   MKINISLTVASQILSILKKNPLTPFDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNH-K 59

Query: 61  RGGVRLCRPADQITILDVVKA---TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
             G  L +    IT+LDV ++    E          + K +CP+  +    L  +L +A 
Sbjct: 60  GEGWYLIKDVHHITLLDVYRSVCRVEGEICSI--HENLKFNCPIGANIQFVLEIILIQAQ 117

Query: 116 NAFFDVLTQYSIECLVR 132
           +    +L   ++  L+R
Sbjct: 118 DEMEQILENVTMGQLIR 134


>gi|296275510|ref|ZP_06858017.1| hypothetical protein SauraMR_04160 [Staphylococcus aureus subsp.
           aureus MR1]
          Length = 146

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG  L   
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGY-LAND 66

Query: 70  ADQI-TILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQ 124
                ++  + K    E+              C +  +   T     +   N   +   +
Sbjct: 67  QSAYVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNE 126

Query: 125 YSIECLVRN 133
            +I+ ++ +
Sbjct: 127 KTIKDVIED 135


>gi|228924839|ref|ZP_04087995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834814|gb|EEM80297.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 102

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103
           + K+GIV   +G+ G   L +    IT+LDV +A E  E   +     +    CP+    
Sbjct: 1   MKKSGIVHVTQGKNG-THLFKDPKFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 59

Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131
              L  +L ++     + L   +++ +V
Sbjct: 60  HMVLELILIQSQEKMEEFLQNVTMQQVV 87


>gi|257457619|ref|ZP_05622786.1| transcriptional regulator family protein [Treponema vincentii
          ATCC 35580]
 gi|257445005|gb|EEV20081.1| transcriptional regulator family protein [Treponema vincentii
          ATCC 35580]
          Length = 110

 Score = 57.7 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M ++ R    +  L+       DY      IAE+  ++ + + KIL  L KAG+V+T  G
Sbjct: 18 MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVKTAAG 77

Query: 60 RRG 62
            G
Sbjct: 78 VGG 80


>gi|293605494|ref|ZP_06687876.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816222|gb|EFF75321.1| transcriptional regulator [Achromobacter piechaudii ATCC 43553]
          Length = 138

 Score = 57.7 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
            P     +      + + + +I+  L   G+V + +G  GG  L    + +T+ D+ +A 
Sbjct: 6   GPMTSEYLGRVMQTNPVVIRRIMAGLRDQGLVSSEKGHGGGWTLSCDFNAVTLRDIYEAL 65

Query: 83  EESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                 A    S    C   +  +  L      A     +   Q ++  L R+
Sbjct: 66  GAPEIFAMGNRSDAPGCLVEVAVNKALDGAFEAAEALLMERFGQVTLAALSRD 118


>gi|314932822|ref|ZP_07840191.1| putative DNA-binding protein [Staphylococcus caprae C87]
 gi|313654503|gb|EFS18256.1| putative DNA-binding protein [Staphylococcus caprae C87]
          Length = 120

 Score = 57.3 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 35/71 (49%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + VL +   H +      ++AE  C++ + L +++  L    ++ TVRG+ GG +  + 
Sbjct: 8  AVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGKDGGYKANQY 67

Query: 70 ADQITILDVVK 80
             + + ++ +
Sbjct: 68 TSTVNLAELYQ 78


>gi|327466800|gb|EGF12324.1| hypothetical protein HMPREF9386_2385 [Streptococcus sanguinis
           SK330]
          Length = 128

 Score = 57.3 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
           I+E+   S     KI+  L    ++ T  G  GG+ + R   +IT+LD+ +A E++  + 
Sbjct: 4   ISESLGFSYSTTVKIIDKLKSENLIITKEGINGGISVVRSLSEITMLDIFEAIEKNNPLF 63

Query: 90  ECFASH---KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           +   +          + +  + + L  +       L+Q  ++ LV   S 
Sbjct: 64  KIQYNTSLLGNPIKRIEN-NIRNRLTDSEKMLRVFLSQVFVQDLVGEESQ 112


>gi|126700375|ref|YP_001089272.1| hypothetical protein CD2759 [Clostridium difficile 630]
 gi|254976353|ref|ZP_05272825.1| hypothetical protein CdifQC_13611 [Clostridium difficile QCD-66c26]
 gi|255093738|ref|ZP_05323216.1| hypothetical protein CdifC_13921 [Clostridium difficile CIP 107932]
 gi|255101929|ref|ZP_05330906.1| hypothetical protein CdifQCD-6_14031 [Clostridium difficile
           QCD-63q42]
 gi|255307798|ref|ZP_05351969.1| hypothetical protein CdifA_14501 [Clostridium difficile ATCC 43255]
 gi|255315490|ref|ZP_05357073.1| hypothetical protein CdifQCD-7_14099 [Clostridium difficile
           QCD-76w55]
 gi|255518153|ref|ZP_05385829.1| hypothetical protein CdifQCD-_13638 [Clostridium difficile
           QCD-97b34]
 gi|255651269|ref|ZP_05398171.1| hypothetical protein CdifQCD_13873 [Clostridium difficile
           QCD-37x79]
 gi|260684333|ref|YP_003215618.1| hypothetical protein CD196_2600 [Clostridium difficile CD196]
 gi|260687992|ref|YP_003219126.1| hypothetical protein CDR20291_2647 [Clostridium difficile R20291]
 gi|306521110|ref|ZP_07407457.1| hypothetical protein CdifQ_16021 [Clostridium difficile QCD-32g58]
 gi|115251812|emb|CAJ69647.1| Transcriptional regulator, Rrf2 family [Clostridium difficile]
 gi|260210496|emb|CBA64986.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260214009|emb|CBE06135.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 132

 Score = 57.3 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 3   LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--G 59
           +++  DY IR++     +  D P     I ++  I  L L+++L+ L    I+   +  G
Sbjct: 2   ISEDVDYSIRIIRAIFNNGEDKPIDAKMILKSEDIPILTLYRLLRKLCANNILTFNKEDG 61

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
           +     L    D I++  +V+  +   ++ +C  + S+  +C  +  C +   L +    
Sbjct: 62  KT--YMLNVSLDTISLRTIVEVIDGKIYINKCTRYVSNCSNC--LKGCKVNRELLEIEKE 117

Query: 118 FFDVLTQYSIECLVR 132
            + +L++ SI  ++ 
Sbjct: 118 IYKLLSRKSIRQILE 132


>gi|257793177|ref|ZP_05642156.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407662|ref|ZP_05680797.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|282928731|ref|ZP_06336326.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|257787149|gb|EEV25489.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840742|gb|EEV65200.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|282589614|gb|EFB94701.1| conserved hypothetical protein [Staphylococcus aureus A10102]
          Length = 138

 Score = 56.9 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      +
Sbjct: 1   MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60

Query: 71  DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126
             +++  + K    E+              C +  +   T     +   N   +   + +
Sbjct: 61  ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNEKT 120

Query: 127 IECLVRN 133
           I+ ++ +
Sbjct: 121 IKDVIED 127


>gi|314937081|ref|ZP_07844428.1| probable DNA-binding protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655700|gb|EFS19445.1| probable DNA-binding protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 149

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           HL    +  + VL +   H++       +A+  C++ + L ++   L +   ++T RG+ 
Sbjct: 3   HLNLEFNIAVHVLSFLVKHDNQQFSSQTLAKLTCLNPVQLRRVTTVLNQYQFIKTSRGKN 62

Query: 62  GGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
           GG         I +  + +    E+           + DC +  +    ++   +K    
Sbjct: 63  GGYSANHSTASIKLSVLYRIFVLEKDSQQRIFTGHEQSDCEISRNIAKTMSHYNQKEHRV 122

Query: 118 FFDVLTQYSIECLVRN 133
             +     +I  ++ +
Sbjct: 123 ILNFYDTLTINDVIND 138


>gi|87159993|ref|YP_493280.1| hypothetical protein SAUSA300_0577 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194356|ref|YP_499149.1| hypothetical protein SAOUHSC_00582 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87125967|gb|ABD20481.1| putative transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201914|gb|ABD29724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320141829|gb|EFW33657.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 138

 Score = 56.5 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      +
Sbjct: 1   MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60

Query: 71  DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126
             +++  + K    E+              C +  +   T     +   N   +     +
Sbjct: 61  ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGKT 120

Query: 127 IECLVRN 133
           I+ ++ +
Sbjct: 121 IKDVIED 127


>gi|327311265|ref|YP_004338162.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
 gi|326947744|gb|AEA12850.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
          Length = 291

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++ L+      + P +  +IAEA  + E ++  I+  L   G+V +  G  GG      A
Sbjct: 17 LKTLVDIYSRENIPVKSKEIAEALKVHEGYIRNIMSVLKSMGLVISKAGPHGGYVPTSKA 76

Query: 71 DQI 73
            I
Sbjct: 77 YDI 79


>gi|27467284|ref|NP_763921.1| hypothetical protein SE0366 [Staphylococcus epidermidis ATCC 12228]
 gi|27314827|gb|AAO03963.1|AE016745_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|329723148|gb|EGG59680.1| transcriptional regulator [Staphylococcus epidermidis VCU144]
 gi|329734079|gb|EGG70398.1| transcriptional regulator [Staphylococcus epidermidis VCU028]
          Length = 140

 Score = 55.3 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL + A H+       ++A+  C++ + L ++L  L +   ++  RG+ GG +  + 
Sbjct: 8   AVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANQH 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLV 102
             Q+ +  + +    +++             C + 
Sbjct: 68  TAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQIS 102


>gi|300114145|ref|YP_003760720.1| ribonuclease BN [Nitrosococcus watsonii C-113]
 gi|299540082|gb|ADJ28399.1| ribonuclease BN [Nitrosococcus watsonii C-113]
          Length = 455

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 8   DYGIRVLMYC--AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             G+ +L     A H    P  +  +A+   +    +  I++ L +A +V        G 
Sbjct: 319 RVGLLILARVGEAFHQGCPPPTLENLAKHFSLPSYLIEDIIESLKRARLVTATGAEPPGY 378

Query: 65  RLCRPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
            L +    +T+   L +++  EE  F  E  +             +  ++ K   A    
Sbjct: 379 LLSKDPATVTVRKVLAIIRQAEEQKFPLESISLKSP--------AVDGIMEKIEQALDQA 430

Query: 122 LTQYSIECLVRNRSS 136
           +   +++ L+ ++  
Sbjct: 431 MKGATLKDLIGDKRE 445


>gi|322689594|ref|YP_004209328.1| hypothetical protein BLIF_1411 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460930|dbj|BAJ71550.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 95

 Score = 55.0 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 58  RGRRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
           RG  GG  L R   +IT+LD+ +A E +    V       K  CP+  +  +  VL+ A 
Sbjct: 3   RG-NGGAELARTPKEITLLDIYQAVESTNLDDVIGIHERGKHTCPVARN--IHDVLKDAY 59

Query: 116 ----NAFFDVLTQYSIECLVRNRSS 136
                A  D + + ++  ++ +  +
Sbjct: 60  APVAKAMSDSMREVTLANMLADYRN 84


>gi|317507858|ref|ZP_07965558.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253831|gb|EFV13201.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 62

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 90  ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS--IKKI-FNAG 144
           EC       CPL  +C L   LR+A  AFF VL + ++  +VR  +   ++++  +AG
Sbjct: 2   EC--EGADPCPLRQACRLRGALRQAQEAFFQVLDRQTVADMVRVPTEPILRELVLSAG 57


>gi|301059962|ref|ZP_07200842.1| HTH-type transcriptional regulator CymR domain protein [delta
          proteobacterium NaphS2]
 gi|300445934|gb|EFK09819.1| HTH-type transcriptional regulator CymR domain protein [delta
          proteobacterium NaphS2]
          Length = 42

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFL 41
          M L+ R+ YG R+++  A   ++ P RI  IAE   IS  +L
Sbjct: 1  MKLSTRSRYGTRMVLDLAKRFDEGPVRIGDIAEREEISVKYL 42


>gi|57866192|ref|YP_187839.1| hypothetical protein SERP0243 [Staphylococcus epidermidis RP62A]
 gi|242241934|ref|ZP_04796379.1| transcription regulator [Staphylococcus epidermidis W23144]
 gi|251810017|ref|ZP_04824490.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874947|ref|ZP_06283822.1| transcriptional regulator [Staphylococcus epidermidis SK135]
 gi|293368048|ref|ZP_06614680.1| conserved hypothetical protein [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|57636850|gb|AAW53638.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|242234609|gb|EES36921.1| transcription regulator [Staphylococcus epidermidis W23144]
 gi|251806468|gb|EES59125.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296275|gb|EFA88794.1| transcriptional regulator [Staphylococcus epidermidis SK135]
 gi|291317738|gb|EFE58152.1| conserved hypothetical protein [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329737821|gb|EGG74056.1| transcriptional regulator [Staphylococcus epidermidis VCU045]
          Length = 140

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 35/71 (49%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + VL + A H+       ++A+  C++ + L ++L  L +   ++  RG+ GG +  + 
Sbjct: 8  AVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANQH 67

Query: 70 ADQITILDVVK 80
            Q+ +  + +
Sbjct: 68 TAQVDLAKLYQ 78


>gi|169333849|ref|ZP_02861042.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259414|gb|EDS73380.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 133

 Score = 54.6 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M    +TD  I+++MY  I  D      +I       +  L  ++  LV+A +++  +G+
Sbjct: 1  MKFDSKTDLAIKIIMYLFIEQDSK-SFEEIHRVIGTRKSILLSVIDRLVEAKVLK--KGK 57

Query: 61 RGG-VRLCRPADQITILDVVKATEESFFVAE 90
                L + AD+I+I D++   + S  V +
Sbjct: 58 DNLTYYLLKDADEISIYDLIILFDGSINVLD 88


>gi|163814554|ref|ZP_02205943.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC
          27759]
 gi|158450189|gb|EDP27184.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC
          27759]
          Length = 139

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  + +    +++L  C ++ D     + IA         +   +  L K  ++ +  G 
Sbjct: 1  MRFSTKYTLALQILTICYLYKDEKITSNFIAAHTGADASIIRYTMLDLKKKDLIVSKPGP 60

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
           GG  L     ++T+ DV +   E   
Sbjct: 61 -GGTNLNCDLSKLTLYDVYELVAEPSD 86


>gi|282925438|ref|ZP_06333093.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
 gi|282592532|gb|EFB97543.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
          Length = 116

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   H+      S +AE  C++ + L ++   LV   +++T+RG+ GG      
Sbjct: 8   AVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQ 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT 108
           +  +++  + K    E+              C +  +   T
Sbjct: 68  SADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATT 108


>gi|169838483|ref|ZP_02871671.1| hypothetical protein cdivTM_15506 [candidate division TM7
           single-cell isolate TM7a]
          Length = 90

 Score = 53.8 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 58  RGRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVL 111
           +G  GG  L R   Q+T+ DVV A E          + E   + +     +G   +  V 
Sbjct: 5   QGAGGGFALAREMKQVTLHDVVLAIEGEAPFFQPQGIIERVFATRRRQVEIGMNMIEKVF 64

Query: 112 RKALNAFFDVLTQYSIECLVRN 133
            +A   + D L   ++E + + 
Sbjct: 65  SEAQQQWSDYLKTVTLEDIAKE 86


>gi|329297808|ref|ZP_08255144.1| DNA-binding protein [Plautia stali symbiont]
          Length = 78

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +  L++   H         +A+    + + + +++  L + G + + +G  GG  L   
Sbjct: 10 SLHALIHLDRHVKR-ATSDAMAKMLGTNPVVVRRMMSGLREKGYLVSEKGHGGGWELRAD 68

Query: 70 ADQITILDVV 79
             IT+L+V 
Sbjct: 69 LRDITLLNVY 78


>gi|300777515|ref|ZP_07087373.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300503025|gb|EFK34165.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 145

 Score = 53.4 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 1   MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M + +    Y I+  +  A        I  I+E       F  KILQ L K  ++ + +G
Sbjct: 1   MLIFSNTCQYAIKACIVLATER-KKIGIIDISEQIGTPTYFTSKILQQLTKKQLISSGKG 59

Query: 60  RRGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           + GG  L     + +TI D+ +  E    +  C    K  C     C +  +        
Sbjct: 60  KGGGFFLTDEQFENLTIKDIYENFEGKEVLTSCLLGLK-QCNGDNPCPIHHLAVAVKEKV 118

Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
             ++ +Y I+ L ++  S+ ++  
Sbjct: 119 L-IMFKYKIKDL-KDLGSVMQMMG 140


>gi|119872079|ref|YP_930086.1| signal transduction protein [Pyrobaculum islandicum DSM 4184]
 gi|119673487|gb|ABL87743.1| putative signal transduction protein with CBS domains
          [Pyrobaculum islandicum DSM 4184]
          Length = 286

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          ++VL+      + P +   IA A  I E ++  +L  L   G+V +  G  GG 
Sbjct: 12 LKVLVELYNKGNTPVKSKDIASALGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65


>gi|327463097|gb|EGF09418.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1]
          Length = 96

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTS 109
           ++   RG  GG  + +    I++LDV  A E   +S  +         DCP+  +  + +
Sbjct: 1   MITVARG-TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHN 57

Query: 110 VLRK----ALNAFFDVLTQYSIECLVR 132
           VL         A    L Q S+  +V 
Sbjct: 58  VLDDRLAAIQAAMEAELAQTSLAEVVA 84


>gi|292493155|ref|YP_003528594.1| ribonuclease BN [Nitrosococcus halophilus Nc4]
 gi|291581750|gb|ADE16207.1| ribonuclease BN [Nitrosococcus halophilus Nc4]
          Length = 456

 Score = 53.4 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 2   HLTK--RTDYGIRVLMYC--AIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVET 56
            L+   +   G+ +L+    A H  + P ++  ++E   +    + ++L+PL KA ++  
Sbjct: 311 RLSNRLKERVGLLILVQVGEAFHRGHSPPKLEGLSEHLGLPSYLIEELLEPLKKAHLITE 370

Query: 57  VRGRRGG----VRLCRPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
                G       L +  D I +   LD+++  EE  F  E                +  
Sbjct: 371 T----GDEPPSYLLRKDPDTIPVRKALDILRQAEEQDFPMEQATLKVP--------AVEG 418

Query: 110 VLRKALNAFFDVLTQYSIECLVRNR 134
           V+ K   A    L + +++ L+R +
Sbjct: 419 VMEKIEQALDQALEEATLKDLIRGQ 443


>gi|171186006|ref|YP_001794925.1| signal transduction protein [Thermoproteus neutrophilus V24Sta]
 gi|170935218|gb|ACB40479.1| putative signal transduction protein with CBS domains
          [Thermoproteus neutrophilus V24Sta]
          Length = 286

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          ++ L+      + P +   IA A  I E ++  +L  L   G+V +  G  GG 
Sbjct: 12 LKALVELYNKENSPVKSRDIANALGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65


>gi|260584120|ref|ZP_05851868.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
 gi|260158746|gb|EEW93814.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
          Length = 96

 Score = 53.0 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 51  AGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--G 106
           A I+ + +G+ G   L +    +++L++  AT+  E   +     +  ++CP+       
Sbjct: 1   AEIISSHQGKSG-YELTKSPKDLSLLEIYFATQEVERISLFPVHQNRNLNCPVGRYIEGA 59

Query: 107 LTSVLRKALNAFFDVLTQYSIECLVRN 133
           ++ +           L   +++ ++ N
Sbjct: 60  ISPIFSDVEEELERELKNKTLKDVIDN 86


>gi|291518906|emb|CBK74127.1| Predicted transcriptional regulator [Butyrivibrio fibrisolvens
           16/4]
          Length = 91

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSV 110
           ++  +RG  GG+ L R    IT  DV +A E  E   +     S   +CP+  +  + S+
Sbjct: 18  LINVIRG-TGGIELTRDLKDITFYDVYQAIEPLEDGDLFRFHESPNPECPVGRN--IHSL 74

Query: 111 LRKALNAFFDVLTQ 124
           L   L +  + +  
Sbjct: 75  LDDKLKSIQEAMES 88


>gi|148262717|ref|YP_001229423.1| putative ribonuclease BN [Geobacter uraniireducens Rf4]
 gi|146396217|gb|ABQ24850.1| tRNA-processing RNAse BN [Geobacter uraniireducens Rf4]
          Length = 449

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P    ++A+   I    + ++L  L + G +    G     +  R  DQIT+ +V+ +  
Sbjct: 337 PLTSERLAKELDIPVKLVRELLTQLAENGYLVATAGDEPSYQPARELDQITVNEVLLSL- 395

Query: 84  ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
                      +       G   +  +L +A  A    LT  +++ LV +    + +
Sbjct: 396 ---------RDYGSHGRFTGEGNVQEILSRANGAAAATLTGMTLKELVASSPKKENV 443


>gi|77165113|ref|YP_343638.1| ribonuclease BN [Nitrosococcus oceani ATCC 19707]
 gi|254433289|ref|ZP_05046797.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27]
 gi|76883427|gb|ABA58108.1| tRNA-processing RNAse BN [Nitrosococcus oceani ATCC 19707]
 gi|207089622|gb|EDZ66893.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27]
          Length = 447

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT---ILDVVK 80
           P  +  + +   +    +  I++ L  A +V        G  L +    +T   +LD+++
Sbjct: 338 PPTLESLVKQLGLPGYLIEDIIESLKSARLVTETGAEPPGYLLSKDPATVTIRKVLDIIR 397

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
             EE  F  E                +  ++ K   A    + + +++ L+ +R  
Sbjct: 398 RAEERQFPLESLLFKAP--------AVDGIMEKVEQALDQAMEKATLKDLIGDRQE 445


>gi|84497230|ref|ZP_00996052.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84382118|gb|EAP98000.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
          Length = 332

 Score = 52.6 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 12  RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R L+   +  + P     ++A    ++E    + +  L +AGI VE++RG  GG  L R 
Sbjct: 16  RALLTLEVLQNRPGVTAGELARRLGVTERATRRHIAILREAGIPVESMRGPHGGYTLGRG 75

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
           A    +  V   TE    V     SH       G+ G    +  AL+     L
Sbjct: 76  AALAPV--VFTETEALSLVMAVIDSHPSAASATGADGEADAVGSALDKVVRAL 126


>gi|18313985|ref|NP_560652.1| hypothetical protein PAE3319 [Pyrobaculum aerophilum str. IM2]
 gi|18161560|gb|AAL64834.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
          IM2]
          Length = 286

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++ L+        P +   IA    I E ++  +L  L   G+V +  G  GG      A
Sbjct: 12 LKALVELYNKEGAPVKSRDIANVLKIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKA 71

Query: 71 DQI 73
            I
Sbjct: 72 TDI 74


>gi|319400096|gb|EFV88332.1| transcriptional regulator family protein [Staphylococcus
           epidermidis FRI909]
          Length = 140

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + VL +   HN       ++A+  C++ + L ++L  L +   ++  RG+ GG +    
Sbjct: 8   AVHVLCFLVQHNQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAGGYQANHH 67

Query: 70  ADQITILDVVK--ATEESFFVAECFASHKIDCPLV 102
             Q+ +  + +    +++             C + 
Sbjct: 68  TAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQIS 102


>gi|332362426|gb|EGJ40226.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
           SK1056]
          Length = 96

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTS 109
           ++   RG  GG  + +    I++LDV  A E   +S  +         DCP+  +  + +
Sbjct: 1   MITVARG-TGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHN 57

Query: 110 VLRK----ALNAFFDVLTQYSIECLVR 132
           VL         A    L Q S++ +V 
Sbjct: 58  VLDDRLAAIQAAMEAELAQTSLDEVVA 84


>gi|314935414|ref|ZP_07842767.1| putative HTH-type transcriptional regulator YffB [Staphylococcus
           hominis subsp. hominis C80]
 gi|313656749|gb|EFS20488.1| putative HTH-type transcriptional regulator YffB [Staphylococcus
           hominis subsp. hominis C80]
          Length = 107

 Score = 52.3 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 53  IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGL 107
           +V +  G+ GG  L +    IT  DV  A E    +            + +      C +
Sbjct: 1   MVYSTTGKNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNI 60

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
           +  L    +     L+  +++ + ++   +  +
Sbjct: 61  SIALNHIEHTLISTLSNINLDDIYQDIIKLYNL 93


>gi|271966049|ref|YP_003340245.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270509224|gb|ACZ87502.1| helix-turn-helix, type 11 [Streptosporangium roseum DSM 43021]
          Length = 333

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R +              ++A    ++E    + +  L +AGI VE+ RG  GG RL R
Sbjct: 11 ALRAMEILRTRPG--VTAGELAACLGVTERAARRYVGILREAGIPVESARGPYGGYRLGR 68

Query: 69 ----PADQIT----ILDVVKATEESFFVAE 90
              P    T    +  V+   +     A+
Sbjct: 69 GTKLPPVAFTEPEALGLVMAVLDGQPAAAD 98


>gi|75761769|ref|ZP_00741707.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74490754|gb|EAO54032.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 116

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL--VKAGIVETVR 58
          M ++ R   G+ +L   AI  +       IA +   + + + +I + +    AG+V+   
Sbjct: 9  MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITRHMLQAAAGLVDVQA 68

Query: 59 GRRG 62
          G+ G
Sbjct: 69 GKGG 72


>gi|146317858|ref|YP_001197570.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145688664|gb|ABP89170.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
          Length = 105

 Score = 51.9 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 47  PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLV 102
            L +AG+VE  RG  GG RL +  DQIT+L V +A E   E   +          C + 
Sbjct: 40  KLKEAGLVEVARGI-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVG 97


>gi|126460347|ref|YP_001056625.1| signal transduction protein [Pyrobaculum calidifontis JCM 11548]
 gi|126250068|gb|ABO09159.1| putative signal transduction protein with CBS domains
          [Pyrobaculum calidifontis JCM 11548]
          Length = 286

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          ++ L         P +   IA    I E ++  +L  L   G+V +  G  GG 
Sbjct: 12 LKALAELYNKTGTPVKSRDIANVLGIHEGYVRNMLSILKSMGLVISKAGPHGGY 65


>gi|307594758|ref|YP_003901075.1| putative CBS domain-containing signal transduction protein
          [Vulcanisaeta distributa DSM 14429]
 gi|307549959|gb|ADN50024.1| putative signal transduction protein with CBS domains
          [Vulcanisaeta distributa DSM 14429]
          Length = 297

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 9  YG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          Y   +  L+   + +  P +   IAE   I+E  +   +  L   G +E+  G  GG 
Sbjct: 10 YASILNALVELYMASKKPVKSRDIAEKLGINEGTVRNSMVALRAMGYIESKTGPYGGY 67


>gi|169837450|ref|ZP_02870638.1| transcriptional regulator [candidate division TM7 single-cell
          isolate TM7a]
          Length = 63

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L+   +    ++   A      P     +AE   +S  +L KI + LV A ++ + +G
Sbjct: 1  MKLSGAVEQACCIMALLADPKRTTPITNDALAEKMAVSPTYLKKISRKLVVAQLITSAQG 60

Query: 60 RRG 62
            G
Sbjct: 61 AGG 63


>gi|313610676|gb|EFR85738.1| transcription regulator [Listeria monocytogenes FSL F2-208]
          Length = 103

 Score = 51.1 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123
           L RP ++I++LDV K+ E +  +         DC +  +    LTS            + 
Sbjct: 14  LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQKMELEME 73

Query: 124 QYSIECLVRNRSSIK 138
           +  ++ +VR+ S ++
Sbjct: 74  KIKLDSIVRDISVLE 88


>gi|311899574|dbj|BAJ31982.1| putative DeoR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 343

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R L    I  D P   S+ +AE   +++    + +  L +AG+ V++ RG  GG RL R 
Sbjct: 11 RALRALEILRDRPGTTSEQLAERLGVTDRAARRYVAILREAGVPVDSERGPYGGYRLGRG 70

Query: 70 AD--------QITILDVVKATEESFFVAE 90
          A         +  +  V+   +      +
Sbjct: 71 ARLAPVSFTQEEALGLVMAVLDGRPAATD 99


>gi|289193273|ref|YP_003459214.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
          sp. FS406-22]
 gi|288939723|gb|ADC70478.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
          sp. FS406-22]
          Length = 145

 Score = 50.7 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73
          H   P  I ++A+   I    L   ++ L   G+VET +GR GGVRL +         +I
Sbjct: 13 HLKEPITIRELAKKLNIHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTKEGLYLLEKGEI 72

Query: 74 TIL 76
          T+ 
Sbjct: 73 TLG 75


>gi|229819240|ref|YP_002880766.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
 gi|229565153|gb|ACQ79004.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
          Length = 328

 Score = 50.3 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68
          R L+   +    P   ++ +A    +SE    + +  L +AGI V + RGR GG R+ R 
Sbjct: 10 RALLALELIQGEPGTTAERLAGRLGVSERAARRYVGILREAGIPVVSERGRYGGYRIGRG 69

Query: 69 ---PADQIT----ILDVVKATEESFFVAE 90
             P    T    +  V+   +     A+
Sbjct: 70 FRLPPLTFTDAEALGLVMAVLDGHHDAAD 98


>gi|302561579|ref|ZP_07313921.1| GntR-family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479197|gb|EFL42290.1| GntR-family transcriptional regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 257

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 23/134 (17%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD---- 71
                +      ++AE   IS + L ++L+ L   G+VE+ RGR GG   L RP D    
Sbjct: 54  LVAGGERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRPTDTGEQ 113

Query: 72  -------QITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA----- 117
                  ++ I DV++  E  E      C A    D     +  L   L     A     
Sbjct: 114 ELRRRIAEVDIEDVLRFREVLEVGAAGLCAAHGLTD---ERAARLREALAGTQEAPLAEY 170

Query: 118 -FFDVLTQYSIECL 130
              D L   ++  L
Sbjct: 171 RRLDTLFHLTLAEL 184


>gi|126347770|emb|CAJ89487.1| putative DeoR-family transcriptional regulator [Streptomyces
          ambofaciens ATCC 23877]
          Length = 323

 Score = 50.3 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +R+L    I         ++AE   +S   + + +  L + G  +E VRG  GG RL R 
Sbjct: 9  LRLLSILGI--GATLTAEELAERLGVSLRTVRRDIDTLRELGYEIEAVRGVGGGYRLGRA 66


>gi|295837109|ref|ZP_06824042.1| transcriptional regulator [Streptomyces sp. SPB74]
 gi|197697220|gb|EDY44153.1| transcriptional regulator [Streptomyces sp. SPB74]
          Length = 323

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L              ++A    ++E  + + +  L +AG+ VE+V G  GG RL R
Sbjct: 16 ALRTLDLLWERPGAG--AGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73

Query: 69 PAD 71
           A 
Sbjct: 74 GAR 76


>gi|294341336|emb|CAZ89752.1| putative transcriptional regulator [Thiomonas sp. 3As]
          Length = 164

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M  T +    + V++  A        +  +  A  ++   L  + + L+ AG++      
Sbjct: 1   MKPTHQEQLALEVMLALARARSGSASVRDLGAALQMAPSTLKTLFERLMDAGLLRCKSAP 60

Query: 61  RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
                L R    IT  D+V A+ +     A        +   + +  L   L  ALN   
Sbjct: 61  DDCYGLARAPRWITAADIVLASQQGPGGAAHGRLIGARNRASLEATALR-ALETALNRCS 119

Query: 119 FDVLTQYSIECLVR 132
            + L   +++ L R
Sbjct: 120 LEFLQAITLQDLAR 133


>gi|239932304|ref|ZP_04689257.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291440669|ref|ZP_06580059.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291343564|gb|EFE70520.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 318

 Score = 49.9 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQ 72
            +  +      ++AE   IS + L ++L+ L   G+VE+ RGR GG   L RP D 
Sbjct: 41 LVVGGERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRPTDT 97


>gi|257053172|ref|YP_003131005.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM
           12940]
 gi|256691935|gb|ACV12272.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM
           12940]
          Length = 178

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 26/133 (19%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR---- 65
            +  L+     +D P + ++IAE    +E  +   ++ L   G+V++V G RGG +    
Sbjct: 15  ALTTLVNEYAESDSPVKSARIAEQVNRTEGSVKNQMRKLSALGLVDSVPGPRGGYQPTEK 74

Query: 66  ----LCR----PADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
               L R      +++ +    +  + +          H  DC             +A  
Sbjct: 75  AFQALERDQDADGEKVVVAQNFERVDVTVDEVTLTNVHHPTDC-------------RARV 121

Query: 117 AFFDVLTQYSIEC 129
            F D+L    I  
Sbjct: 122 HFQDILDGIDIGD 134


>gi|291545492|emb|CBL18600.1| hypothetical protein CK1_02420 [Ruminococcus sp. SR1/5]
          Length = 98

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123
           L +PADQIT+LD+ KA E    +         DC +  +    L     +      + + 
Sbjct: 12  LSKPADQITLLDIYKAVEGEKPLLHLDTHTNPDCGVGINIQLSLQEFYNEIQKTAEEKMN 71

Query: 124 QYSIECLVRNRSSIKKIFN 142
             +++ ++        I N
Sbjct: 72  MITLQDIINTYYQRTSILN 90


>gi|21225872|ref|NP_631651.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|256783087|ref|ZP_05521518.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289766970|ref|ZP_06526348.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|11322399|emb|CAC16712.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289697169|gb|EFD64598.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 326

 Score = 49.6 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 12 RVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68
          R L    I    P   + ++A    ++E    + +  L +AGI VE+ RG  GG RL R 
Sbjct: 10 RALRALEILRTRPTTTADELAVRLGVTERAARRYVGILKEAGIPVESARGPHGGYRLGRG 69

Query: 69 ---PADQIT----ILDVVKATEESFFVAE 90
             P    T    +  V+ A      VA+
Sbjct: 70 TRLPPVHFTQAEALGLVMAALGGRPAVAD 98


>gi|332668652|ref|YP_004451659.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332337689|gb|AEE44272.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC
          484]
          Length = 315

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          R L+   AI +       ++ E   +SE    + +  L +A I VE++RGR GG RL R
Sbjct: 9  RALLALEAIQSHPGITADRLGERLGVSERAARRYVGMLREADIPVESLRGRYGGYRLGR 67


>gi|302533496|ref|ZP_07285838.1| GntR family transcriptional regulator [Streptomyces sp. C]
 gi|302442391|gb|EFL14207.1| GntR family transcriptional regulator [Streptomyces sp. C]
          Length = 255

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
            +      ++AE   IS + L ++L+ L   G+VE  RGR GG   L RP
Sbjct: 53  GERLPPERELAERMGISRVTLREVLKVLQDQGLVEARRGRYGGTFVLARP 102


>gi|318057827|ref|ZP_07976550.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          sp. SA3_actG]
          Length = 315

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L              ++A    ++E  + + +  L +AG+ VE+V G  GG RL R
Sbjct: 16 ALRTLDLLWERPG--LGAGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73

Query: 69 PAD 71
           A 
Sbjct: 74 GAR 76


>gi|333025101|ref|ZP_08453165.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332744953|gb|EGJ75394.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 315

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L              ++A    ++E  + + +  L +AG+ VE+V G  GG RL R
Sbjct: 16 ALRTLDLLWERPG--LGAGELAGRLGVTERAVRRYVGMLREAGVPVESVPGPGGGYRLGR 73

Query: 69 PAD 71
           A 
Sbjct: 74 GAR 76


>gi|145591936|ref|YP_001153938.1| signal transduction protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283704|gb|ABP51286.1| putative signal transduction protein with CBS domains
          [Pyrobaculum arsenaticum DSM 13514]
          Length = 286

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          ++ L+      + P +   IA +  I E ++  +L  L   G+V +  G  GG 
Sbjct: 12 LKTLVELYNKENAPIKSRDIANSLKIHEGYVRNMLSILKSMGLVVSKAGPHGGY 65


>gi|291301151|ref|YP_003512429.1| helix-turn-helix type 11 domain-containing protein
          [Stackebrandtia nassauensis DSM 44728]
 gi|290570371|gb|ADD43336.1| Helix-turn-helix type 11 domain protein [Stackebrandtia
          nassauensis DSM 44728]
          Length = 321

 Score = 49.2 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L              ++AE   ++E    + +  L +AGI V++ RG  GG RL R
Sbjct: 11 ALRTLEILQARPG--TTAGELAERLGVTERAARRYVGILREAGIPVDSARGIYGGYRLGR 68


>gi|256389557|ref|YP_003111121.1| hypothetical protein Caci_0327 [Catenulispora acidiphila DSM
          44928]
 gi|256355783|gb|ACU69280.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 339

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          RVL    +  +      ++IAE   +    + + ++ L++  I VE+VRGR GG RL R
Sbjct: 7  RVLTLLELLQSGGVRTAAEIAERLGVDARTVRRYVEQLLELEIPVESVRGRYGGYRLAR 65


>gi|256810394|ref|YP_003127763.1| BadM/Rrf2 family transcriptional regulator [Methanocaldococcus
          fervens AG86]
 gi|256793594|gb|ACV24263.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
          fervens AG86]
          Length = 145

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73
          H   P  I ++A+   +    L   ++ L   G+VET +GR GGVRL R         +I
Sbjct: 13 HLKEPITIRELAKKLNMHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTREGLYLLEKGEI 72

Query: 74 TIL 76
          T+ 
Sbjct: 73 TLG 75


>gi|325968965|ref|YP_004245157.1| signal transduction protein with CBS domains [Vulcanisaeta
          moutnovskia 768-28]
 gi|323708168|gb|ADY01655.1| putative signal transduction protein with CBS domains
          [Vulcanisaeta moutnovskia 768-28]
          Length = 297

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 9  YG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          Y   +  L+   + +  P +   IAE   I+E  +   +  L   G +E+  G  GG 
Sbjct: 10 YASILNALVELYMMSKRPVKSRDIAEKLSINEGTVRNSMVALRAMGYIESKTGPYGGY 67


>gi|330721757|gb|EGG99748.1| hypothetical protein imdm_738 [gamma proteobacterium IMCC2047]
          Length = 132

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 8   DYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
              + V++  A +   +       Q+A         + ++L  L K  ++    G+    
Sbjct: 4   RLALAVMLNIARNYYRDKSALTNKQLAIRLRTPSDIVRQVLSALEKQSLISPTNGKVVRY 63

Query: 65  RLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
              +P D++++ DV+ A     E   +         +        + ++     +   + 
Sbjct: 64  LPAKPLDEMSVADVLHAVRHANEDRHLNPSMLPQDQE--------VDTIFETLNSTIVET 115

Query: 122 LTQYSIECLVRNRSS 136
             Q +I+ LV+    
Sbjct: 116 FAQQTIKQLVKEEKD 130


>gi|284043663|ref|YP_003394003.1| GntR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947884|gb|ADB50628.1| GntR domain protein [Conexibacter woesei DSM 14684]
          Length = 261

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
             D     S++AE   IS+  L + L+ L +AG++   RG  GG+ L 
Sbjct: 40 REGDRLPNESELAEQLAISKPTLRQALRVLERAGLIAVKRGAGGGIFLA 88


>gi|297204698|ref|ZP_06922095.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197710770|gb|EDY54804.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 323

 Score = 48.8 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L              ++A +  ++E    + +  L +AGI V + RG  GG RL R
Sbjct: 11 ALRTL-EILQSRTAGVTADELAASLGVTERAARRYVAILREAGIPVHSARGPYGGYRLGR 69

Query: 69 PAD 71
           A 
Sbjct: 70 GAR 72


>gi|238059897|ref|ZP_04604606.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237881708|gb|EEP70536.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 327

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R L      +       Q+A    ++E    + ++ L +AGI +E+VRG  GG RL R
Sbjct: 11 ALRALEILQARSGA--TADQLASLLGVTERAARRYVEILREAGIPIESVRGPYGGYRLGR 68

Query: 69 ----PA----DQITILDVVKATEESFFVAE 90
              P      +  +  V+   +      +
Sbjct: 69 GTRLPPVVFTQEQALGLVMAVLDGQPAAID 98


>gi|15668416|ref|NP_247212.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2495873|sp|Q57693|Y241_METJA RecName: Full=Uncharacterized protein MJ0241
 gi|1499019|gb|AAB98229.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 145

 Score = 48.8 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA------DQI 73
          H   P  I ++A+   +    L   ++ L   G+VET +GR GGVRL +         +I
Sbjct: 13 HLKEPITIKELAKKLNMHPKNLDVKIRVLRDLGLVETKKGRNGGVRLTKEGLYLLEKGEI 72

Query: 74 TIL 76
          T+ 
Sbjct: 73 TLG 75


>gi|294811670|ref|ZP_06770313.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294324269|gb|EFG05912.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 286

 Score = 48.4 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
            ++AE   IS + L ++L+ L   G+VE+ RGR GG   L RP
Sbjct: 94  RELAERMGISRVTLREVLKVLADQGLVESRRGRYGGTFVLPRP 136


>gi|108797169|ref|YP_637366.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866254|ref|YP_936206.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767588|gb|ABG06310.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
 gi|119692343|gb|ABL89416.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
          Length = 260

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R++      I          +AE    S   L ++L  L +AG+V  V GR GG+ +   
Sbjct: 11 RIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70

Query: 70 ADQITILDVV 79
            +  + DVV
Sbjct: 71 QVERNLADVV 80


>gi|254392829|ref|ZP_05007999.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440146|ref|ZP_08214880.1| GntR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706486|gb|EDY52298.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 273

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
            ++AE   IS + L ++L+ L   G+VE+ RGR GG   L RP
Sbjct: 81  RELAERMGISRVTLREVLKVLADQGLVESRRGRYGGTFVLPRP 123


>gi|126432791|ref|YP_001068482.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232591|gb|ABN95991.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
          Length = 260

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R++      +          +AE    S   L ++L  L +AG+V  V GR GG+ +   
Sbjct: 11 RIVADINAGVPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70

Query: 70 ADQITILDVV 79
            +  + DVV
Sbjct: 71 QVERNLADVV 80


>gi|297155966|gb|ADI05678.1| GntR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 267

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +R+L +      +      ++AE   IS + L ++L+ L   G+VE+ RGR GG
Sbjct: 36 LRILRLGLVPEGERLPSERELAERLRISRVTLREVLKVLADQGLVESRRGRYGG 89


>gi|302525067|ref|ZP_07277409.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
 gi|302433962|gb|EFL05778.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
          Length = 240

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV----RLCRPADQITIL 76
            D      ++AE   +S + L + ++ L  AG VE+ RGR GG     +L  PA++  + 
Sbjct: 42  GDRLPSERELAERLGVSRVTLREAIRALADAGYVESRRGRYGGTFVNEKLPEPAERA-VG 100

Query: 77  DV 78
           +V
Sbjct: 101 EV 102


>gi|284162807|ref|YP_003401430.1| TrmB family transcriptional regulator [Archaeoglobus profundus
          DSM 5631]
 gi|284012804|gb|ADB58757.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM
          5631]
          Length = 300

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+        P +  +I+E    +   +   +Q L   G+VE   G +GG R
Sbjct: 13 LNALITLYRKKGLPVKGEEISELINRNPGTVRNQMQALRALGLVEGAPGPKGGYR 67


>gi|284172627|ref|YP_003406009.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM
          5511]
 gi|284017387|gb|ADB63336.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM
          5511]
          Length = 177

 Score = 48.0 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +R L      ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LRALTNLHKKSEDTVKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|297198462|ref|ZP_06915859.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|297147101|gb|EFH28484.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 245

 Score = 48.0 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQI 73
           +      ++AE   IS + L ++L+ L   G+VE+ RGR GG   L R  D +
Sbjct: 45 GERLPAERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRTPDAV 98


>gi|269128041|ref|YP_003301411.1| GntR domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268312999|gb|ACY99373.1| GntR domain protein [Thermomonospora curvata DSM 43183]
          Length = 254

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLCRPADQIT 74
            H +      ++A    +S + L + ++ L + G VE+ RGR GG     R  RP     
Sbjct: 51  AHGERLPPERELAPRLGVSRVTLREAIRALQQEGYVESRRGRSGGTFVIYRTPRPQS--- 107

Query: 75  ILDVVKATEESFF 87
             D+ +  E    
Sbjct: 108 -GDLARVAEGQVE 119


>gi|221233070|ref|YP_002515506.1| Rrf2 family protein [Caulobacter crescentus NA1000]
 gi|220962242|gb|ACL93598.1| Rrf2 family protein [Caulobacter crescentus NA1000]
          Length = 140

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 18  AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           A   D     +++A     S     + + ++   L KAG++    G  GG  L +PA+ I
Sbjct: 22  AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETI 77

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLV 131
           T+  V++A      +          CP+       + + +  A  A  + L+Q ++  L+
Sbjct: 78  TLDVVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 136


>gi|16124387|ref|NP_418951.1| hypothetical protein CC_0132 [Caulobacter crescentus CB15]
 gi|13421241|gb|AAK22119.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 153

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 18  AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           A   D     +++A     S     + + ++   L KAG++    G  GG  L +PA+ I
Sbjct: 35  AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETI 90

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLV 131
           T+  V++A      +          CP+       + + +  A  A  + L+Q ++  L+
Sbjct: 91  TLDVVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 149


>gi|114570135|ref|YP_756815.1| helix-turn-helix, type 11 domain-containing protein [Maricaulis
          maris MCS10]
 gi|114340597|gb|ABI65877.1| Helix-turn-helix, type 11 domain protein [Maricaulis maris MCS10]
          Length = 244

 Score = 47.6 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 11 IRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +R +   A+    D    +S +A    +SE  + + L  + + G+ +++ RGR GGVRL 
Sbjct: 10 LRRMDMLAVQLKQDGLCTVSDLARQHDVSERTIARDLLLMREQGLPIDSDRGRGGGVRLD 69

Query: 68 RP 69
          R 
Sbjct: 70 RN 71


>gi|20090252|ref|NP_616327.1| hypothetical protein MA1391 [Methanosarcina acetivorans C2A]
 gi|19915246|gb|AAM04807.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 291

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           L+      D   +  +IAE    +   +   +Q L   G+VE V G +GG +
Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALGLVEGVPGPKGGYK 65


>gi|297195400|ref|ZP_06912798.1| GntR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152768|gb|EDY63139.2| GntR-family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 253

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
            ++AE   IS + L ++L+ L   G+VE+ RGR GG   L RP
Sbjct: 61  RELAERMGISRVTLREVLKVLTDQGLVESRRGRYGGTFVLHRP 103


>gi|284165340|ref|YP_003403619.1| hypothetical protein Htur_2063 [Haloterrigena turkmenica DSM
          5511]
 gi|284014995|gb|ADB60946.1| protein of unknown function UPF0074 [Haloterrigena turkmenica DSM
          5511]
          Length = 194

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPADQ 72
          + P R   IA    +    + + +  L +  +VE VRG +GG R        L R  D+
Sbjct: 25 ESPVRAKTIAAELGLETESVRRQMGHLRELNLVEGVRGPKGGYRPTDIAYSVLGRRPDE 83


>gi|118472184|ref|YP_884683.1| GntR family transcriptional regulator [Mycobacterium smegmatis
          str. MC2 155]
 gi|118173471|gb|ABK74367.1| transcriptional regulator, GntR family protein [Mycobacterium
          smegmatis str. MC2 155]
          Length = 259

 Score = 47.6 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
            +AE    S   L ++L  L +AG+V  V GR GG+ +     +  + DVV
Sbjct: 29 RDLAEKYGTSRSSLRQVLAALEEAGLVHRVIGRSGGIFISHGQVERNLSDVV 80


>gi|145221826|ref|YP_001132504.1| UbiC transcription regulator-associated domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|145214312|gb|ABP43716.1| transcriptional regulator, GntR family [Mycobacterium gilvum
          PYR-GCK]
          Length = 272

 Score = 47.3 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R++                ++AE    S   L ++L  L +AG+V+ V GR GG+ +   
Sbjct: 23 RIVADINAGKPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRSGGIFISHA 82

Query: 70 ADQITILDVV 79
            Q ++ DVV
Sbjct: 83 QVQRSLTDVV 92


>gi|307942960|ref|ZP_07658305.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773756|gb|EFO32972.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 351

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           + +L+  +         + +AE   +S   +++ +  L   G+ VE  RG  GG RL +
Sbjct: 22 ALAILLLMS--GGKLVSATTLAERFGVSLRTIYRDIDRLNALGVPVEAARGAEGGYRLAK 79


>gi|119719850|ref|YP_920345.1| signal transduction protein [Thermofilum pendens Hrk 5]
 gi|119524970|gb|ABL78342.1| putative signal transduction protein with CBS domains
          [Thermofilum pendens Hrk 5]
          Length = 307

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            P   S+IAEA   S+  +  ++  L   G+VE   G  GG 
Sbjct: 22 GRPVTSSEIAEAVGKSDGTVRNVISALKAMGLVEAKTGPGGGY 64


>gi|124027017|ref|YP_001012337.1| transcriptional regulator [Hyperthermus butylicus DSM 5456]
 gi|123977711|gb|ABM79992.1| predicted transcriptional regulator [Hyperthermus butylicus DSM
          5456]
          Length = 296

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           LT      +  L+          +  +IAE     E  +  I+  L   G+VE+  G  
Sbjct: 5  KLTMSQREVLEALIRLYDERRRLIKSKEIAELVNKDEGTVRNIILSLKSLGLVESKTGPT 64

Query: 62 GGVRLCRPADQI 73
          GG      A +I
Sbjct: 65 GGYMPTLKAYEI 76


>gi|29833266|ref|NP_827900.1| GntR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610388|dbj|BAC74435.1| putative GntR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 258

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------------RLCR 68
            +      ++AE   IS + L ++L+ L   G+VE+ RGR GG              L R
Sbjct: 59  GERLPSERELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRADAGGEDELRR 118

Query: 69  PADQITILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA------FF 119
             +++ + DV++     E     A   A+H +         L   L +  +A        
Sbjct: 119 RIEKVDMEDVLRFREVLE--VGAAGLCAAHGLTAEQED--RLREALARTQDAPLADYRRL 174

Query: 120 DVLTQYSIECL 130
           D L   ++  L
Sbjct: 175 DTLLHLTLAEL 185


>gi|294496519|ref|YP_003543012.1| signal transduction protein with CBS domains [Methanohalophilus
          mahii DSM 5219]
 gi|292667518|gb|ADE37367.1| putative signal transduction protein with CBS domains
          [Methanohalophilus mahii DSM 5219]
          Length = 291

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+      D   +  +IA+    +   +   +Q L   G+VE V G +GG R
Sbjct: 11 LIALINLQRQKDSAVKGEEIADLIDRNPGTVRNQMQSLKMLGLVEGVPGPKGGYR 65


>gi|315446437|ref|YP_004079316.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315264740|gb|ADU01482.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1]
          Length = 260

 Score = 47.3 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R++                ++AE    S   L ++L  L +AG+V+ V GR GG+ +   
Sbjct: 11 RIVADINAGKPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRSGGIFISHA 70

Query: 70 ADQITILDVV 79
            Q ++ DVV
Sbjct: 71 QVQRSLTDVV 80


>gi|282165568|ref|YP_003357953.1| putative transcriptional regulator [Methanocella paludicola
          SANAE]
 gi|282157882|dbj|BAI62970.1| putative transcriptional regulator [Methanocella paludicola
          SANAE]
          Length = 291

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+          +  +I+E    +   +   +Q L   G+VE V G +GG +
Sbjct: 11 LSALINLFREKGRAVKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYK 65


>gi|73669658|ref|YP_305673.1| hypothetical protein Mbar_A2165 [Methanosarcina barkeri str.
          Fusaro]
 gi|72396820|gb|AAZ71093.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 291

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           L+      D   +  +IAE    +   +   +Q L   G+VE V G +GG +
Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIKRNPGTIRNQMQLLKALGLVEGVPGPKGGYK 65


>gi|308160144|gb|EFO62648.1| Hypothetical protein GLP15_4766 [Giardia lamblia P15]
          Length = 742

 Score = 47.3 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
           + I++I++    +  F+ +I + L    G+VE+ +G   G ++ +     ++ +++K  
Sbjct: 11 LSTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70

Query: 83 EESF 86
          E + 
Sbjct: 71 EANL 74


>gi|120406516|ref|YP_956345.1| UbiC transcription regulator-associated domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119959334|gb|ABM16339.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 255

 Score = 46.9 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R++      +         ++AE    S   L ++L  L +AG+V+ V GR GG+ +   
Sbjct: 11 RIVSDINAGVPGTKLGSERELAERYRTSRSSLRQVLAALEEAGLVDRVIGRAGGIFISHA 70

Query: 70 ADQITILDVV 79
            Q ++ DVV
Sbjct: 71 QVQRSLTDVV 80


>gi|326793724|ref|YP_004311544.1| hypothetical protein Marme_0408 [Marinomonas mediterranea MMB-1]
 gi|326544488|gb|ADZ89708.1| hypothetical protein Marme_0408 [Marinomonas mediterranea MMB-1]
          Length = 244

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          + ++   + S + E   +S+  L + L  L KAG  +E+ RGR GG+RL 
Sbjct: 20 LRSEEYWKTSDLREQLGVSQRTLMRELAELKKAGYPIESDRGRGGGIRLN 69


>gi|322691555|ref|YP_004221125.1| hypothetical protein BLLJ_1366 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456411|dbj|BAJ67033.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 89

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 66  LCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL----NAFF 119
           L  P  +IT+LD+ +A E +    V          CP+  +  +  VL+ A      A  
Sbjct: 4   LPAPPKEITLLDIYQAVESTNLDDVIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMS 61

Query: 120 DVLTQYSIECLVRNRSS 136
           D + + ++  ++ +  +
Sbjct: 62  DSMREVTLANMLADYRN 78


>gi|225016854|ref|ZP_03706046.1| hypothetical protein CLOSTMETH_00766 [Clostridium methylpentosum
          DSM 5476]
 gi|224950343|gb|EEG31552.1| hypothetical protein CLOSTMETH_00766 [Clostridium methylpentosum
          DSM 5476]
          Length = 298

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +     ++Y  + +       ++AE   +SE  +++ ++ L  AGI V   +G
Sbjct: 1  MQINRLFE-----MIYL-LLDRRRMTAKELAERFEVSERTVYRDVEVLSAAGIPVYATKG 54

Query: 60 RRGGVRL 66
          R GG++L
Sbjct: 55 RGGGIQL 61


>gi|284165543|ref|YP_003403822.1| hypothetical protein Htur_2269 [Haloterrigena turkmenica DSM
          5511]
 gi|284015198|gb|ADB61149.1| Protein of unknown function DUF293 [Haloterrigena turkmenica DSM
          5511]
          Length = 177

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +R L      ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LRALTNLHKESEAAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|289579991|ref|YP_003478457.1| hypothetical protein Nmag_0304 [Natrialba magadii ATCC 43099]
 gi|289529544|gb|ADD03895.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
          Length = 177

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +R L      ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LRALTNLHKESEDAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|159109685|ref|XP_001705106.1| Hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803]
 gi|157433185|gb|EDO77432.1| hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803]
          Length = 738

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
             I++I++    +  F+ +I + L    G+VE+ +G   G ++ +     ++ +++K  
Sbjct: 11 LLTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70

Query: 83 EESF 86
          E + 
Sbjct: 71 EANL 74


>gi|300783743|ref|YP_003764034.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299793257|gb|ADJ43632.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 234

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +      ++AE   +S + L + ++ L  AG VE+ RGR GG
Sbjct: 37 GERLPSERELAERLGVSRVTLREAIRALSDAGYVESRRGRYGG 79


>gi|326328978|ref|ZP_08195308.1| putative transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
 gi|325953237|gb|EGD45247.1| putative transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
          Length = 317

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          R L+   +    P     ++ E   ++E    + +  L +AGI VE+ RG  GG RL R
Sbjct: 10 RALLTLELLQSSPGITAERLGERLRVTERAARRYVAILREAGIPVESERGPYGGYRLGR 68


>gi|56962182|ref|YP_173905.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56908417|dbj|BAD62944.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 303

 Score = 46.5 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRG 62
          + VL   A   +    I ++AE+  +S   + K +Q L KAG+++T  VRG+ G
Sbjct: 24 LNVLQLLA---ERSMNIKELAESQQVSSAIMTKHVQKLEKAGLIDTTHVRGKAG 74


>gi|331696097|ref|YP_004332336.1| helix-turn-helix type 11 domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326950786|gb|AEA24483.1| helix-turn-helix type 11 domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 346

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          RVL   A +        +++A A  + E  + + +  LV+  + V + RGR GG RL R
Sbjct: 7  RVLALLAILQAGGTRTAAELAAAIGVDERTVRRYVAHLVELDVPVRSERGRHGGFRLAR 65


>gi|147920241|ref|YP_685992.1| hypothetical protein RCIX1391 [uncultured methanogenic archaeon
          RC-I]
 gi|110621388|emb|CAJ36666.1| conserved hypothetical protein [uncultured methanogenic archaeon
          RC-I]
          Length = 292

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+          +  +I+E    +   +   +Q L   G+VE V G +GG +
Sbjct: 12 LSALINLFREKGRAIKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYK 66


>gi|313126392|ref|YP_004036662.1| transcriptional regulator, contains c-terminal cbs domains
          [Halogeometricum borinquense DSM 11551]
 gi|312292757|gb|ADQ67217.1| predicted transcriptional regulator, contains C-terminal CBS
          domains [Halogeometricum borinquense DSM 11551]
          Length = 177

 Score = 46.1 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+      +   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALINLYRQTEDAVKGEDIAEEVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|289583371|ref|YP_003481781.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
 gi|289532869|gb|ADD07219.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
          Length = 173

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R ++   +      +   IA    +    +   +Q L    +V+ V G +GG R    A
Sbjct: 14 LRAVIDLHMEQQTTVKGDDIAAEVGLKAGTIRNKMQSLKALQLVDGVPGPKGGYR--PTA 71

Query: 71 DQITILDVVKATEESFFVAE 90
             T L+V +  + +     
Sbjct: 72 AAYTALEVQQIDDPAIVPVR 91


>gi|329935293|ref|ZP_08285259.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329305116|gb|EGG48975.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 372

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG 62
          T  T   +  L+   +       ++ +A    + E  + +    L++ G+ VE++RGR G
Sbjct: 3  TSTTR--VLALLEI-LQGGGTRTVADLAARLGVDERTVRRYAGHLLELGVPVESLRGRYG 59

Query: 63 GVRLC 67
          G RL 
Sbjct: 60 GYRLA 64


>gi|227828274|ref|YP_002830054.1| signal transduction protein with CBS domains [Sulfolobus
          islandicus M.14.25]
 gi|227831032|ref|YP_002832812.1| Protein of unknown function DUF293 [Sulfolobus islandicus
          L.S.2.15]
 gi|229579913|ref|YP_002838312.1| signal transduction protein with CBS domains [Sulfolobus
          islandicus Y.G.57.14]
 gi|229581426|ref|YP_002839825.1| putative signal-transduction protein with CBS domains [Sulfolobus
          islandicus Y.N.15.51]
 gi|229585503|ref|YP_002844005.1| signal transduction protein with CBS domains [Sulfolobus
          islandicus M.16.27]
 gi|238620466|ref|YP_002915292.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus M.16.4]
 gi|284998527|ref|YP_003420295.1| Protein of unknown function DUF293 [Sulfolobus islandicus
          L.D.8.5]
 gi|227457480|gb|ACP36167.1| Protein of unknown function DUF293 [Sulfolobus islandicus
          L.S.2.15]
 gi|227460070|gb|ACP38756.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus M.14.25]
 gi|228010628|gb|ACP46390.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus Y.G.57.14]
 gi|228012142|gb|ACP47903.1| putative signal-transduction protein with CBS domains [Sulfolobus
          islandicus Y.N.15.51]
 gi|228020553|gb|ACP55960.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus M.16.27]
 gi|238381536|gb|ACR42624.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus M.16.4]
 gi|284446423|gb|ADB87925.1| Protein of unknown function DUF293 [Sulfolobus islandicus
          L.D.8.5]
 gi|323475344|gb|ADX85950.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus REY15A]
 gi|323478069|gb|ADX83307.1| putative signal transduction protein with CBS domains [Sulfolobus
          islandicus HVE10/4]
          Length = 300

 Score = 46.1 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L           +  ++A+     E  +  I+  L   G+VE+  G  GG      A
Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71

Query: 71 DQI 73
           +I
Sbjct: 72 YEI 74


>gi|15897070|ref|NP_341675.1| hypothetical protein SSO0110 [Sulfolobus solfataricus P2]
 gi|284173415|ref|ZP_06387384.1| hypothetical protein Ssol98_01997 [Sulfolobus solfataricus 98/2]
 gi|1707784|emb|CAA69582.1| orf c04012 [Sulfolobus solfataricus P2]
 gi|13813241|gb|AAK40465.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261601725|gb|ACX91328.1| putative signal transduction protein with CBS domains [Sulfolobus
          solfataricus 98/2]
          Length = 300

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L           +  ++A+     E  +  I+  L   G+VE+  G  GG      A
Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71

Query: 71 DQI 73
           +I
Sbjct: 72 YEI 74


>gi|261403683|ref|YP_003247907.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
          vulcanius M7]
 gi|261370676|gb|ACX73425.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
          vulcanius M7]
          Length = 145

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M ++  T    +++ +       P     +A+   I    +   ++ L   G+VET +GR
Sbjct: 1  MKVSGLTK---KIMEHL----KEPTTTKDLAKQLNIHPKNIDAKIRVLRDLGLVETKKGR 53

Query: 61 RGGVRLCRPA------DQITI 75
           GG++L +         +I++
Sbjct: 54 NGGIKLTKEGLILLEKGEISL 74


>gi|116754457|ref|YP_843575.1| signal transduction protein [Methanosaeta thermophila PT]
 gi|116665908|gb|ABK14935.1| putative signal transduction protein with CBS domains
          [Methanosaeta thermophila PT]
          Length = 288

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L+          +  +IAE    +   +   +Q L    +VE V G +GG +    A
Sbjct: 11 LTALINIHRREGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYKATGAA 70

Query: 71 DQI----TILDVVKA 81
           +        DVV  
Sbjct: 71 YEALCLDNSGDVVDV 85


>gi|53803574|ref|YP_114581.1| ribonuclease BN [Methylococcus capsulatus str. Bath]
 gi|53757335|gb|AAU91626.1| putative ribonuclease BN [Methylococcus capsulatus str. Bath]
          Length = 430

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 8   DYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
              + +++      A        +  +A+   +    +   L+ L + G++ ++ G R  
Sbjct: 306 RLALLLMILIGRSHARGEAAACTLPGLADQVNLPWEAVADPLECLKRHGLLLSLNGERKA 365

Query: 64  VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
             L R  D I + +VV+A        V                  +  +L     +    
Sbjct: 366 YVLARDTDAILLSEVVEAVRTAGDQPVLTLQDEPD---------AVREILAAIDRSPETT 416

Query: 122 LTQYSIECLVR 132
           L   S+  +VR
Sbjct: 417 LGNRSLRDVVR 427


>gi|167747738|ref|ZP_02419865.1| hypothetical protein ANACAC_02459 [Anaerostipes caccae DSM 14662]
 gi|167653100|gb|EDR97229.1| hypothetical protein ANACAC_02459 [Anaerostipes caccae DSM 14662]
          Length = 107

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 45  LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
           +  L K G++ T  G  GG        ++T+ DV  A +  F V+  + S   D P    
Sbjct: 1   MGKLKKKGLISTKEGVVGGYLFDLDPSKVTLYDVSSALDVPF-VSSSWRSGGSDLP---- 55

Query: 105 CGLTSVLRKALNAFFDVLTQ 124
           C + S +   ++  +  L Q
Sbjct: 56  CLVASGMAGIMDDIYGTLDQ 75


>gi|282864299|ref|ZP_06273355.1| GntR domain protein [Streptomyces sp. ACTE]
 gi|282560786|gb|EFB66332.1| GntR domain protein [Streptomyces sp. ACTE]
          Length = 245

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRL--CRPA------- 70
            +      ++AE   IS + L ++L+ L   G+VE  RGR GG   L   RPA       
Sbjct: 46  GERLPPERELAEHLGISRVTLREVLKVLQDQGLVEARRGRYGGTFVLPRSRPADGDELRR 105

Query: 71  --DQITILDVVK 80
             +++ + DV++
Sbjct: 106 RVEEVDLTDVLR 117


>gi|327401863|ref|YP_004342702.1| putative signal transduction protein [Archaeoglobus veneficus SNP6]
 gi|327317371|gb|AEA47987.1| putative signal transduction protein with CBS domains
           [Archaeoglobus veneficus SNP6]
          Length = 295

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--- 65
           Y +  L           +  +IAE    +   +   +Q L   G+VE V G +GG R   
Sbjct: 13  YALITLY--KKKGGASIKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYRPTA 70

Query: 66  -----LCR-PADQ-----ITI-LDVVKATEESFFV 88
                L     ++     IT+  +V+ A+ E   +
Sbjct: 71  KAYELLAITKPEEAVRVPITVNGEVIDASAEEIDL 105


>gi|294632783|ref|ZP_06711342.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
 gi|292830564|gb|EFF88914.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
          Length = 247

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
             + +       +A+   +S + L ++L+ L   GIVE+ RGR GG   L RP
Sbjct: 41 LVPYGERLPAERDLADRLGVSRVTLREVLKALQDQGIVESRRGRYGGTFVLRRP 94


>gi|300711575|ref|YP_003737389.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3]
 gi|299125258|gb|ADJ15597.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3]
          Length = 177

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+      +   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALINLHREAEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|312198298|ref|YP_004018359.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229634|gb|ADP82489.1| transcriptional regulator [Frankia sp. EuI1c]
          Length = 345

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    ++ +   + ++ +A    + E  + + +  L    + V +VRGR GG RL 
Sbjct: 7  RVLALLESLQSGGTHTVAALAARLEVDERTVRRYVDQLRDLDVPVRSVRGRHGGYRLA 64


>gi|163840289|ref|YP_001624694.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
 gi|162953765|gb|ABY23280.1| transcriptional regulator, HTH domain [Renibacterium salmoninarum
          ATCC 33209]
          Length = 320

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R L    I    P     ++     +++    + +  L +AGI VE++RG  GG RL 
Sbjct: 10 RALQALEILRSRPGTTAEELGTRLGVTDRAARRYVAILREAGIPVESIRGAHGGYRLG 67


>gi|115380143|ref|ZP_01467176.1| ribonuclease BN, putative [Stigmatella aurantiaca DW4/3-1]
 gi|310823548|ref|YP_003955906.1| ribonuclease bn [Stigmatella aurantiaca DW4/3-1]
 gi|115362848|gb|EAU62050.1| ribonuclease BN, putative [Stigmatella aurantiaca DW4/3-1]
 gi|309396620|gb|ADO74079.1| Ribonuclease BN [Stigmatella aurantiaca DW4/3-1]
          Length = 456

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 10  GIRVLMY--CAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
             RV +    A  +  P  +   +A    + E F+   ++ + KA ++E+ R  +GGVR 
Sbjct: 316 AARVAVDATLAWMDGLPPPLPRHLAAHLRVPESFVHDAIERMEKAHLLESSR--KGGVRP 373

Query: 67  CRPADQITILDVVKATEE 84
            R   ++T  DV  A   
Sbjct: 374 ARDPSELTFADVAFAIHG 391


>gi|72161850|ref|YP_289507.1| transcriptional regulator [Thermobifida fusca YX]
 gi|71915582|gb|AAZ55484.1| putative transcriptional regulator [Thermobifida fusca YX]
          Length = 332

 Score = 45.7 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L   ++          ++AE   +SE  L + +  L + G  VE  RG  GG +L
Sbjct: 13 RMLRLLSLLQTQRYWSGRELAEQLGVSERTLRRDVDRLRELGYPVEATRGVAGGYQL 69


>gi|92115292|ref|YP_575220.1| GntR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798382|gb|ABE60521.1| transcriptional regulator, GntR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 251

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 16/111 (14%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--------GVRLCRPA 70
              +     + + E   IS   + + +  L  AG+V + RG            +RL  P 
Sbjct: 33  RPGERLPTEAALGERYGISRSVVREAISMLRNAGLVTSRRGSGSFVAEVPTVALRLAIP- 91

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
              ++  +++  E    +            L       S LR+  NA  D+
Sbjct: 92  -DPSLQSIIRLLELRRAL------EVEAARLAAQRRTPSQLRRIRNAMADI 135


>gi|15604349|ref|NP_220865.1| hypothetical protein RP488 [Rickettsia prowazekii str. Madrid E]
 gi|3861041|emb|CAA14941.1| unknown [Rickettsia prowazekii]
 gi|292572103|gb|ADE30018.1| Iron-sulfur cluster assembly transcription factor IscR
          [Rickettsia prowazekii Rp22]
          Length = 64

 Score = 45.3 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M L  +  Y +  ++  A + ++ P  + +++    IS  +L +I   L K+ +V+++
Sbjct: 1  MILKIKEIYTVMAILELATNISNGPIILDKVSIKHNISLNYLAQIFSKLKKSDLVKSI 58


>gi|21222871|ref|NP_628650.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|7981391|emb|CAB92106.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 341

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +        ++++AE   ++E  + + +  LV   + VE+VRGR GG RL 
Sbjct: 7  RVLTLLELLQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 64


>gi|302550263|ref|ZP_07302605.1| GntR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467881|gb|EFL30974.1| GntR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 244

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 23/123 (18%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------------RLCRPADQITI 75
            ++AE   IS + L ++L+ L   G+VE+ RGR GG              L R   ++ I
Sbjct: 52  RELAERLGISRVTLREVLKVLQDQGLVESRRGRYGGTFVLPRADAGGEDELRRRIAEVDI 111

Query: 76  LDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA------FFDVLTQYSI 127
            DV++  E  E      C A    +     +  L   L +  +A        D L   +I
Sbjct: 112 EDVLRFREVLEVGAAGLCAAHGLDE---GQADRLREALARTHDAPLAEYRRLDTLLHLTI 168

Query: 128 ECL 130
             L
Sbjct: 169 AEL 171


>gi|73668133|ref|YP_304148.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
 gi|72395295|gb|AAZ69568.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
          Length = 221

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH+ +  +Y +  ++Y    N  P +  QI+E   +S   + ++++ L  +G+VE     
Sbjct: 1   MHIDRFEEY-LETILYLIRKNQGPAKTKQISEELNVSPPSVTEMIKKLHSSGLVEYT--P 57

Query: 61  RGGVRLCRPADQ--ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA-LNA 117
             GV L +      I I    +  E   F+ +     + +     +C L   +  A L  
Sbjct: 58  YQGVELTKQGTDQAIKIKRKHQVLE--TFLVDVLDFDRKEAHKE-ACELEHAVSDAVLEK 114

Query: 118 FFDVL 122
            ++ L
Sbjct: 115 IYEFL 119


>gi|289769915|ref|ZP_06529293.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289700114|gb|EFD67543.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 341

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +        ++++AE   ++E  + + +  LV   + VE+VRGR GG RL 
Sbjct: 7  RVLTLLELLQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 64


>gi|325959703|ref|YP_004291169.1| putative signal transduction protein with CBS domains
          [Methanobacterium sp. AL-21]
 gi|325331135|gb|ADZ10197.1| putative signal transduction protein with CBS domains
          [Methanobacterium sp. AL-21]
          Length = 293

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          ++ L+    + D   +  +IAE    +   +   +Q L   G+V+ V G RGG +
Sbjct: 10 LQSLINLYRNADASIKGEEIAEIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 64


>gi|11497731|ref|NP_068952.1| hypothetical protein AF0111 [Archaeoglobus fulgidus DSM 4304]
 gi|2650538|gb|AAB91120.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 299

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          Y +  L      +    +  +IAE    +   +   +Q L   G+VE V G +GG R
Sbjct: 15 YALITLY--KKKSGGSVKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYR 69


>gi|110668555|ref|YP_658366.1| transcriptional regulator [Haloquadratum walsbyi DSM 16790]
 gi|109626302|emb|CAJ52760.1| probable transcriptional regulator [Haloquadratum walsbyi DSM
          16790]
          Length = 177

 Score = 45.3 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+     ++   +   IA+    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALINLHREDEEAVKGETIADEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|159041685|ref|YP_001540937.1| signal transduction protein [Caldivirga maquilingensis IC-167]
 gi|157920520|gb|ABW01947.1| putative signal transduction protein with CBS domains [Caldivirga
          maquilingensis IC-167]
          Length = 295

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+     +  P +  +IA+   ++E  +  I+  L    +V++  G  GG 
Sbjct: 11 VEALLELYNMHKRPIKSKEIADKLGMNEGTIRNIMVALKAMNLVDSKTGPYGGF 64


>gi|21231763|ref|NP_637680.1| repressor [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66768111|ref|YP_242873.1| repressor [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113470|gb|AAM41604.1| repressor [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573443|gb|AAY48853.1| repressor [Xanthomonas campestris pv. campestris str. 8004]
          Length = 339

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            R+L   A+  N      + +AE   I    + + ++ L + G  +  V G  GG RL 
Sbjct: 5  AARLLRLIALMQNGRDWPGAALAERLGIHPRSVRRDMERLRELGYPIRAVSGTGGGYRLG 64

Query: 68 RPADQITILDVVKATEESFFVA 89
            A  + +L      EE   + 
Sbjct: 65 HGAAALPLL-----FEEDEALT 81


>gi|84498273|ref|ZP_00997070.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84381773|gb|EAP97656.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
          Length = 248

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           IR L   A + +      ++AE   ++   L   +  L ++G+V T RGR GG
Sbjct: 35 AIR-LGVLA-NGEQLPPERELAERLGVARNTLRDAIAALRESGLVTTKRGRGGG 86


>gi|298675660|ref|YP_003727410.1| putative signal transduction protein [Methanohalobium evestigatum
          Z-7303]
 gi|298288648|gb|ADI74614.1| putative signal transduction protein with CBS domains
          [Methanohalobium evestigatum Z-7303]
          Length = 291

 Score = 44.9 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           L+      ++  +   IAE    +   +   +Q L   G+VE V G +GG +
Sbjct: 13 ALINLQRQKNHAIKGEDIAEVIQRNPGTVRNQMQSLKVLGLVEGVPGPKGGYK 65


>gi|322370374|ref|ZP_08044933.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus
          DX253]
 gi|320550082|gb|EFW91737.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus
          DX253]
          Length = 177

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+      +   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALVNLHRETEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|317405514|gb|EFV85822.1| GntR-family transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 242

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 15/116 (12%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71
              D     S+I     +S   + + L  L  +G+VET  G         GG        
Sbjct: 36  RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGGGDFRVDPA 95

Query: 72  QI-TILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQ 124
            I T+ DV+   E       C  S              L   +R+AL+AF   L  
Sbjct: 96  DIATVRDVLVLLELRI----CLESEAAGLAAVRRSEAQLAE-MRRALDAFKAALDS 146


>gi|70607246|ref|YP_256116.1| CBS domain-containing protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567894|gb|AAY80823.1| CBS domain protein [Sulfolobus acidocaldarius DSM 639]
          Length = 300

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+     N    +  +IA+     E  +  ++  L   G++E+  G  GG 
Sbjct: 12 LLALIDIYNKNKRMVKSKEIADMIGKDEGTVRNVILSLKVLGLIESKPGPSGGY 65


>gi|120556399|ref|YP_960750.1| regulatory proteins, IclR [Marinobacter aquaeolei VT8]
 gi|120326248|gb|ABM20563.1| regulatory protein, IclR [Marinobacter aquaeolei VT8]
          Length = 258

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H D    +++IA A  +    + +I+  L   G VE VR   GG RL 
Sbjct: 26 IMRELGEHPDG-LSLAEIARAVALPRSTIQRIIGALEAEGFVEMVR-AEGGYRLG 78


>gi|308176260|ref|YP_003915666.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743723|emb|CBT74695.1| putative transcriptional regulator [Arthrobacter arilaitensis
          Re117]
          Length = 318

 Score = 44.9 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++  T + +R+L     H        ++A+   +S   + + +  L   G  V+  RG  
Sbjct: 1  MSTSTRF-LRLLSLLQTH--RYWSGDELAQRLDVSLRTVRRDIDRLRDLGYPVQADRGVG 57

Query: 62 GGVRLC 67
          GG +L 
Sbjct: 58 GGYQLA 63


>gi|18313486|ref|NP_560153.1| hypothetical protein PAE2640 [Pyrobaculum aerophilum str. IM2]
 gi|18161024|gb|AAL64335.1| conserved within P. aerophilum [Pyrobaculum aerophilum str. IM2]
          Length = 189

 Score = 44.6 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRRGGVR 65
           IR L+  A +        ++ E   ISE  L  ++Q L +AG+VE      RGR    R
Sbjct: 16 AIRHLVDGATY----VTFKELVERLGISERRLRALMQELRQAGLVEAYINPSRGRALLYR 71

Query: 66 LC 67
          L 
Sbjct: 72 LA 73


>gi|330507926|ref|YP_004384354.1| hypothetical protein MCON_1966 [Methanosaeta concilii GP-6]
 gi|328928734|gb|AEB68536.1| CBS domain pair protein/Domain of unknown function PF03444
          [Methanosaeta concilii GP-6]
          Length = 295

 Score = 44.6 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L+          +  +IAE    +   +   +Q L    +VE V G +GG R    A
Sbjct: 18 LTALINIYRVEGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYRATGSA 77

Query: 71 -DQITI---LDVVKA 81
           + + +    DVV  
Sbjct: 78 YEALNVEATGDVVTV 92


>gi|328881254|emb|CCA54493.1| GntR family transcriptional regulator [Streptomyces venezuelae
          ATCC 10712]
          Length = 242

 Score = 44.6 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +      ++A+   IS + L ++L+ L + G+VE+ RGR GG
Sbjct: 43 GERLPAERELADRMGISRVTLREVLKVLQEQGLVESRRGRYGG 85


>gi|184155927|ref|YP_001844267.1| hypothetical protein LAF_1451 [Lactobacillus fermentum IFO 3956]
 gi|260662818|ref|ZP_05863712.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|183227271|dbj|BAG27787.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|260552899|gb|EEX25898.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 108

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 41  LFKILQPLVKAGIVETVRGRRGGV-RLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           + K++  L  A I+   +  R       R  DQIT+LDV +AT                C
Sbjct: 1   MRKMIAQLRAADILAARQNNR--YDNFARDLDQITVLDVYRATAPKNPFLVPDQETSGQC 58

Query: 100 PLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
            +  +    +T    +        L Q +++ LV  
Sbjct: 59  SVGVAFPEVITKHFAEVQVGIEQRLDQITVQQLVDE 94


>gi|325696001|gb|EGD37892.1| HTH domain protein [Streptococcus sanguinis SK160]
          Length = 308

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI V + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPVYSERGDKGGFY 60


>gi|256786020|ref|ZP_05524451.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 334

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          L+   +       ++++AE   ++E  + + +  LV   + VE+VRGR GG RL 
Sbjct: 4  LLEL-LQAGGVRSVAELAERLGVAERTVRRYVDHLVDLDVPVESVRGRYGGYRLA 57


>gi|91773827|ref|YP_566519.1| hypothetical protein Mbur_1886 [Methanococcoides burtonii DSM
          6242]
 gi|91712842|gb|ABE52769.1| Cystathionine-beta-synthase and DUF293 domains-containing protein
          [Methanococcoides burtonii DSM 6242]
          Length = 291

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          L+          +  +IAE    +   +   +Q L   G+VE V G +GG R    A +
Sbjct: 14 LINLQRQKASAVKGEEIAELIDRNPGTVRNQMQSLKMLGLVEGVPGPKGGYRATGDAYE 72


>gi|271967479|ref|YP_003341675.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270510654|gb|ACZ88932.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 318

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL--- 66
          +R+L     H ++P    ++A    +S   L + +  L + G  V    G  GG RL   
Sbjct: 9  LRLLSLLQAHREWPGP--ELAGRLEVSPRTLRRDIDRLRELGYPVHATTGPAGGYRLEAG 66

Query: 67 -CRPA 70
             P 
Sbjct: 67 TAMPP 71


>gi|118469804|ref|YP_887727.1| IclR family protein regulator [Mycobacterium smegmatis str. MC2
          155]
 gi|118171091|gb|ABK71987.1| probable IclR family protein regulator [Mycobacterium smegmatis
          str. MC2 155]
          Length = 260

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           IR+L   A     P  +++IA    +++  +  +   L + G+V   R   GG  L R
Sbjct: 18 SIRILDLLAEARGVPRTLTEIARELGLAKSSVSNLCAALEEGGLV---RRSTGGYLLGR 73


>gi|188991241|ref|YP_001903251.1| putative DNA-binding protein [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733001|emb|CAP51199.1| putative DNA-binding protein [Xanthomonas campestris pv.
          campestris]
          Length = 339

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            R+L   A+  N      + +AE   I    + + ++ L + G  +  V G  GG RL 
Sbjct: 5  AARLLRLIALMQNGRDWPGAALAERLGIHPRSVRRDIERLRELGYPIRAVSGTGGGYRLG 64

Query: 68 RPADQITILDVVKATEESFFVA 89
            A  + +L      EE   + 
Sbjct: 65 HGAAALPLL-----FEEDEALT 81


>gi|296164612|ref|ZP_06847179.1| crp family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295900031|gb|EFG79470.1| crp family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 270

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL--- 66
             +L     H    ++ ++I +   ++   + +IL  L   G+V + RGR GG RL   
Sbjct: 14 AAEILRLLQAHPGGLSQ-AEIGDRLGLARSTVSRILGALDDEGLVASPRGR-GGYRLGPE 71

Query: 67 -CRPADQITILDVVKA 81
            R A  + +  V+  
Sbjct: 72 IARMASTVRLGVVMDV 87


>gi|302866392|ref|YP_003835029.1| hypothetical protein Micau_1905 [Micromonospora aurantiaca ATCC
          27029]
 gi|302569251|gb|ADL45453.1| helix-turn-helix, type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 318

 Score = 44.6 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +       ++ +A    + E  + +    L   GI VE  RGR GG RL 
Sbjct: 8  VLALLEI-LQAGGGFTVADLAGRLGVDERTVRRYAAHLADLGIPVEARRGRYGGYRLA 64


>gi|315502806|ref|YP_004081693.1| helix-turn-helix, type 11 [Micromonospora sp. L5]
 gi|315409425|gb|ADU07542.1| helix-turn-helix, type 11 [Micromonospora sp. L5]
          Length = 318

 Score = 44.2 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +       ++ +A    + E  + +    L   GI VE  RGR GG RL 
Sbjct: 8  VLALLEI-LQAGGGFTVADLAGRLGVDERTVRRYAAHLADLGIPVEARRGRYGGYRLA 64


>gi|238061724|ref|ZP_04606433.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237883535|gb|EEP72363.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 323

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          RVL    +  +      S++A+        + +    L + GI VE  RGR GG RL R
Sbjct: 7  RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLAR 65


>gi|85709156|ref|ZP_01040222.1| putative transcriptional regulator, ArsR family protein
          [Erythrobacter sp. NAP1]
 gi|85690690|gb|EAQ30693.1| putative transcriptional regulator, ArsR family protein
          [Erythrobacter sp. NAP1]
          Length = 105

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
           A  ++      QIAE   IS+  + + L  L  AG+VE+  RG+    RL R 
Sbjct: 17 LAYLSESELTAGQIAERFDISKPAVSQHLTVLQNAGLVESEKRGQYVHYRLVRE 70


>gi|289772673|ref|ZP_06532051.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289702872|gb|EFD70301.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 247

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
               +      ++AE   IS + L ++L+ L   G+V+  RGR GG   L R 
Sbjct: 44 LVAAGERLPAERELAERLGISRVTLREVLRVLQDQGLVQARRGRYGGTFVLPRA 97


>gi|85707149|ref|ZP_01038236.1| rrf2 family protein [Roseovarius sp. 217]
 gi|85668308|gb|EAQ23182.1| rrf2 family protein [Roseovarius sp. 217]
          Length = 50

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
           +  +C L   L  A+ AF+  L + +++ LV +  ++  IF+A
Sbjct: 1   MTEACRLRVALVDAVEAFYAHLDEVTLDALVCDNQALFTIFSA 43


>gi|54027109|ref|YP_121351.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54018617|dbj|BAD59987.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 333

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  A+    P     +A+   +S   + + L  L  AG  +   RGR GGV L
Sbjct: 9  LLLALRPGRPLTTEHLADQLGVSVRTVLRDLNWLRDAGFPLVVQRGRHGGVTL 61


>gi|21220111|ref|NP_625890.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|256788778|ref|ZP_05527209.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|3581869|emb|CAA20825.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 236

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
               +      ++AE   IS + L ++L+ L   G+V+  RGR GG   L R 
Sbjct: 33 LVAAGERLPAERELAERLGISRVTLREVLRVLQDQGLVQARRGRYGGTFVLPRA 86


>gi|329939063|ref|ZP_08288437.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329301948|gb|EGG45841.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 273

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 11  IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +RVL +      +      ++A    +S + L ++L+ L + G+V + RGR GG
Sbjct: 57  LRVLRLGLVPAGERLPAERELAGRLGVSRVTLREVLRVLHEEGLVASRRGRYGG 110


>gi|312132401|ref|YP_003999740.1| transcriptional regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|311772721|gb|ADQ02209.1| Putative transcriptional regulator [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 86

 Score = 44.2 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 69  PADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKAL----NAFFDVL 122
           P  +IT+LD+ +A E +    V          CP+  +  +  VL+ A      A  D +
Sbjct: 4   PPKEITLLDIHQAVESTNLDDVIGIHERGNHTCPVARN--IHDVLKDAYAPVAKAMSDSM 61

Query: 123 TQYSIECLVRNRSS 136
            + ++  ++ +  +
Sbjct: 62  REVTLANMLADYRN 75


>gi|294633321|ref|ZP_06711880.1| PE-PGRS family protein [Streptomyces sp. e14]
 gi|292831102|gb|EFF89452.1| PE-PGRS family protein [Streptomyces sp. e14]
          Length = 509

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          M   + +      + +A    +SE  + + +Q L +AG+ V + RGR GG RL 
Sbjct: 1  MALLLQSSPGLTAAALAHELDVSERTVIRDVQALQEAGVPVRSERGRAGGYRLA 54


>gi|302518083|ref|ZP_07270425.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302426978|gb|EFK98793.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 244

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71
               +      ++A    +S   L +++  L   G+V++ RGR GG       R   
Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDSRRGRYGGTFVRAGARAPR 98


>gi|21243192|ref|NP_642774.1| repressor [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108718|gb|AAM37310.1| repressor [Xanthomonas axonopodis pv. citri str. 306]
          Length = 321

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                    +AE   I    L + ++ L +AG  V    G  GG RL + A  + +L  
Sbjct: 16 QGGRSWSGVALAERLGIHPRSLRRDIERLREAGYPVHATPGSGGGYRLGQGAAALPLL-- 73

Query: 79 VKATEESFFVA 89
              EE+  + 
Sbjct: 74 ---LEENEALT 81


>gi|307316927|ref|ZP_07596369.1| regulatory protein GntR HTH [Sinorhizobium meliloti AK83]
 gi|306897549|gb|EFN28293.1| regulatory protein GntR HTH [Sinorhizobium meliloti AK83]
          Length = 243

 Score = 44.2 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78
          ++AE   +S   + + L  L   G+VE  RG  G   L RP+  +  + D+
Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96


>gi|296269707|ref|YP_003652339.1| regulatory protein GntR HTH [Thermobispora bispora DSM 43833]
 gi|296092494|gb|ADG88446.1| regulatory protein GntR HTH [Thermobispora bispora DSM 43833]
          Length = 249

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +L+   +  +     ++ A+   +S + L + L  L + G+VET+RGR GG  + RP
Sbjct: 26 ILLGLLVDGEQLPTEAEFADQLGVSPMTLREALAILRQQGLVETLRGRNGGSFVRRP 82


>gi|16263854|ref|NP_436646.1| putative transcriptional regulator protein [Sinorhizobium
          meliloti 1021]
 gi|15139978|emb|CAC48506.1| putative transcriptional regulator protein [Sinorhizobium
          meliloti 1021]
          Length = 243

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78
          ++AE   +S   + + L  L   G+VE  RG  G   L RP+  +  + D+
Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96


>gi|333028238|ref|ZP_08456302.1| putative GntR family transcriptional regulator [Streptomyces sp.
          Tu6071]
 gi|332748090|gb|EGJ78531.1| putative GntR family transcriptional regulator [Streptomyces sp.
          Tu6071]
          Length = 244

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71
               +      ++A    +S   L +++  L   G+V++ RGR GG       R   
Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDSRRGRYGGTFVRAGARAPR 98


>gi|307308149|ref|ZP_07587864.1| regulatory protein GntR HTH [Sinorhizobium meliloti BL225C]
 gi|306901352|gb|EFN31957.1| regulatory protein GntR HTH [Sinorhizobium meliloti BL225C]
          Length = 243

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TILDV 78
          ++AE   +S   + + L  L   G+VE  RG  G   L RP+  +  + D+
Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRPSQDLPNLADL 96


>gi|152964313|ref|YP_001360097.1| hypothetical protein Krad_0343 [Kineococcus radiotolerans
          SRS30216]
 gi|151358830|gb|ABS01833.1| Helix-turn-helix type 11 domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 339

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +++A+   +S   L + +  L   G  V   RG  GG RL   A 
Sbjct: 24 AELADRLGVSPRTLRRDVDRLRALGYPVHAARGVAGGYRLAPGAS 68


>gi|239929902|ref|ZP_04686855.1| regulatory protein GntR, HTH [Streptomyces ghanaensis ATCC 14672]
          Length = 248

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +L+   +  +      + A    +S + L + L  L + G+VET RGR GG  + RP
Sbjct: 34 ILLGLVVDGEQLPTEVEFAGQLGVSPMTLREALAILRQQGLVETRRGRNGGTFVRRP 90


>gi|29827442|ref|NP_822076.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29604541|dbj|BAC68611.1| putative transcriptional regulator [Streptomyces avermitilis
          MA-4680]
          Length = 350

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +       +  +A    + E  + + +  L+  G+ V++VRGR GG RL 
Sbjct: 8  VLALLEI-LQEGGIRTVPDLAARLNVDERTVRRYVGHLLDLGVPVDSVRGRYGGYRLA 64


>gi|292655727|ref|YP_003535624.1| hypothetical protein HVO_1577 [Haloferax volcanii DS2]
 gi|291372275|gb|ADE04502.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 177

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+     ++   +   IA     +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALINLYRDSEDAVKGEDIAAEVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|311108762|ref|YP_003981615.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763451|gb|ADP18900.1| bacterial regulatory protein, GntR family protein 61 [Achromobacter
           xylosoxidans A8]
          Length = 242

 Score = 43.8 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 15/116 (12%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71
              D     S+I     +S   + + L  L  +G+VET  G         GG        
Sbjct: 36  RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGGGDFRVDPA 95

Query: 72  QI-TILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFFDVLTQ 124
            I T+ DV+   E       C  S              L   +R+AL+AF   L  
Sbjct: 96  DIATVRDVLVLLELRI----CLESEAAGLAAARRSPAQLLE-MRRALDAFKSALDG 146


>gi|302547556|ref|ZP_07299898.1| helix-turn-helix, type 11 [Streptomyces hygroscopicus ATCC 53653]
 gi|302465174|gb|EFL28267.1| helix-turn-helix, type 11 [Streptomyces himastatinicus ATCC 53653]
          Length = 300

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12  RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           RVL    +  +     ++++A+   + E  + +    LV   + VE+VRGR GG RL 
Sbjct: 58  RVLTLLELLQSGGLRTVAELADRLGVDERTVRRYADHLVDLDVPVESVRGRYGGYRLA 115


>gi|291438237|ref|ZP_06577627.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341132|gb|EFE68088.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 240

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +L+   +  +      + A    +S + L + L  L + G+VET RGR GG  + RP
Sbjct: 26 ILLGLVVDGEQLPTEVEFAGQLGVSPMTLREALAILRQQGLVETRRGRNGGTFVRRP 82


>gi|302529398|ref|ZP_07281740.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302438293|gb|EFL10109.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 332

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   + +     ++++AE   + E  + + ++ L+   I V +VRGR GG RL 
Sbjct: 8  VLALLEI-LQSGGTRTVAELAERLDVDERTVRRYVEHLLDLDIPVRSVRGRYGGYRLA 64


>gi|332366994|gb|EGJ44734.1| HTH domain protein [Streptococcus sanguinis SK1059]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|332362580|gb|EGJ40380.1| HTH domain protein [Streptococcus sanguinis SK1056]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|332362072|gb|EGJ39874.1| HTH domain protein [Streptococcus sanguinis SK49]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|327474849|gb|EGF20254.1| HTH domain protein [Streptococcus sanguinis SK408]
 gi|328946456|gb|EGG40596.1| HTH domain protein [Streptococcus sanguinis SK1087]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|327461193|gb|EGF07526.1| HTH domain protein [Streptococcus sanguinis SK1057]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|325694692|gb|EGD36598.1| HTH domain protein [Streptococcus sanguinis SK150]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|325690501|gb|EGD32504.1| HTH domain protein [Streptococcus sanguinis SK115]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|325687697|gb|EGD29718.1| HTH domain protein [Streptococcus sanguinis SK72]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|324993984|gb|EGC25903.1| HTH domain protein [Streptococcus sanguinis SK405]
 gi|324994697|gb|EGC26610.1| HTH domain protein [Streptococcus sanguinis SK678]
 gi|327463242|gb|EGF09563.1| HTH domain protein [Streptococcus sanguinis SK1]
 gi|327489974|gb|EGF21763.1| HTH domain protein [Streptococcus sanguinis SK1058]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|324991621|gb|EGC23554.1| HTH domain protein [Streptococcus sanguinis SK353]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|323351337|ref|ZP_08086993.1| HTH domain protein [Streptococcus sanguinis VMC66]
 gi|322122561|gb|EFX94272.1| HTH domain protein [Streptococcus sanguinis VMC66]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|220935818|ref|YP_002514717.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997128|gb|ACL73730.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7]
          Length = 439

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 29/146 (19%)

Query: 2   HLTK--RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
            L+   +    +RV+            P  +  +A    +    + ++   L KAG++ T
Sbjct: 308 QLSSALKERLALRVMKSIGTRFHEGRGPTPLDDLAHELDMPVEAVERVTDALRKAGLLVT 367

Query: 57  --------VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
                   V G        R   QIT+   + A           A   +  P      + 
Sbjct: 368 AGQDPVSFVPG--------RDTGQITLKACLDAVRG--------ADSTVPGPRGEDESVD 411

Query: 109 SVLRKALNAFFDVLTQYSIECLVRNR 134
           +++     A  + L   ++  LV  +
Sbjct: 412 TLMEALDRALGERLEGVTLAALVERQ 437


>gi|184199738|ref|YP_001853945.1| GntR family transcriptional regulator [Kocuria rhizophila DC2201]
 gi|183579968|dbj|BAG28439.1| putative GntR family transcriptional regulator [Kocuria
          rhizophila DC2201]
          Length = 235

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71
            +      ++A    +S   L   L  L +AG ++  RGR GG   L  PA 
Sbjct: 37 RGEKLPPERELAAHLGVSRATLRDALAELQRAGFIDVRRGRYGGTYILGSPAA 89


>gi|125718247|ref|YP_001035380.1| hypothetical protein SSA_1436 [Streptococcus sanguinis SK36]
 gi|125498164|gb|ABN44830.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|171687947|ref|XP_001908914.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943935|emb|CAP69587.1| unnamed protein product [Podospora anserina S mat+]
          Length = 371

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+     N     + ++A    +S   +  ++  LV  G+V +  G  G   L   
Sbjct: 40  AVHALIELG--NGRSLSVDELAAELRVSTGQVRGVVPELVGRGLVRS-EGDGGSYGLTEE 96

Query: 70  ADQITILDV 78
             + T+  +
Sbjct: 97  GKE-TLGRI 104


>gi|111223307|ref|YP_714101.1| DeoR family transcriptional regulator [Frankia alni ACN14a]
 gi|111150839|emb|CAJ62543.1| putative DeoR-family transcriptional regulator [Frankia alni
          ACN14a]
          Length = 322

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +R+L     H  +P    ++AE   +S   L + +  L + G  V+  RG  GG +L
Sbjct: 9  LRLLSLLQTHRYWPG--GELAERLGVSPRTLRRDVDRLRELGYPVQATRGVAGGYQL 63


>gi|254471193|ref|ZP_05084595.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062]
 gi|211959339|gb|EEA94537.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062]
          Length = 232

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          L+   +  +    +  +A    +SE  + + LQ + + G+ ++  RGR GGVRL R 
Sbjct: 3  LLAVQLKQEELCTVKDLALQHGVSERTITRDLQLMREQGLPIDADRGRGGGVRLDRN 59


>gi|15790026|ref|NP_279850.1| inosine-5'-monophosphate dehydrogenase [Halobacterium sp. NRC-1]
 gi|169235749|ref|YP_001688949.1| hypothetical protein OE2306F [Halobacterium salinarum R1]
 gi|10580454|gb|AAG19330.1| inosine-5'-monophosphate dehydrogenase [Halobacterium sp. NRC-1]
 gi|167726815|emb|CAP13601.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 177

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +R L+      +   +   IA+    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LRALVDRYTQQETAVKGEAIADEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|327470769|gb|EGF16225.1| HTH domain protein [Streptococcus sanguinis SK330]
          Length = 308

 Score = 43.8 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG 
Sbjct: 9  ILLALLNKRQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGF 59


>gi|218508987|ref|ZP_03506865.1| putative transcriptional regulator protein [Rhizobium etli Brasil
           5]
          Length = 131

 Score = 43.8 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 83  EESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
           +       C +        DC    +C +   +    +A   +L   ++E  V 
Sbjct: 1   DGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDAIAAILDNMTLEQFVA 54


>gi|310640200|ref|YP_003944958.1| deor-family transcriptional regulator [Paenibacillus polymyxa
          SC2]
 gi|309245150|gb|ADO54717.1| DeoR-family transcriptional regulator [Paenibacillus polymyxa
          SC2]
          Length = 303

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L+++ +     ++Y  +H        ++AE   +S   +++ +  L  AGI + + RG
Sbjct: 1  MPLSRQFE-----IVYMLLHK-KKVTADELAEHFEVSTRTIYRDIDALSAAGIPIYSSRG 54

Query: 60 RRGGVRL 66
          + GG+ L
Sbjct: 55 KGGGISL 61


>gi|149177233|ref|ZP_01855839.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797]
 gi|148843947|gb|EDL58304.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797]
          Length = 131

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          L+  T   +R+++Y A   +       + E    S+  +   L  L  AG++E  R G+ 
Sbjct: 35 LSDETR--LRIMLYLAQEEELFVTA--LCERLNQSQPAVSHHLALLRDAGLIEARRDGKH 90

Query: 62 GGVRLCRP 69
              +CR 
Sbjct: 91 NFYSICRE 98


>gi|119716814|ref|YP_923779.1| GntR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119537475|gb|ABL82092.1| transcriptional regulator, GntR family [Nocardioides sp. JS614]
          Length = 248

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +AE   +S   L + +  L +AG+VET RGR GG
Sbjct: 53 RDLAEQLAVSRATLREAMAALREAGLVETKRGRGGG 88


>gi|300787897|ref|YP_003768188.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299797411|gb|ADJ47786.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 318

 Score = 43.4 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + ++ L   G  VE  RG  GG RL      P 
Sbjct: 24 SELAERLGVSPRTIRRDVERLRDLGYPVEASRGVAGGYRLVAGTAMPP 71


>gi|296450500|ref|ZP_06892256.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296879376|ref|ZP_06903370.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296260761|gb|EFH07600.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296429522|gb|EFH15375.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 334

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          I++     I +++E   +S   + + L+ L K G+ ++  +GR GG R
Sbjct: 20 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 67


>gi|260683696|ref|YP_003214981.1| hypothetical protein CD196_1960 [Clostridium difficile CD196]
 gi|260687356|ref|YP_003218490.1| hypothetical protein CDR20291_2003 [Clostridium difficile R20291]
 gi|260209859|emb|CBA63762.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213373|emb|CBE04987.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 334

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          I++     I +++E   +S   + + L+ L K G+ ++  +GR GG R
Sbjct: 20 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 67


>gi|255656069|ref|ZP_05401478.1| hypothetical protein CdifQCD-2_10309 [Clostridium difficile
          QCD-23m63]
          Length = 179

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          I++     I +++E   +S   + + L+ L K G+ ++  +GR GG R
Sbjct: 14 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 61


>gi|126699713|ref|YP_001088610.1| hypothetical protein CD2096 [Clostridium difficile 630]
 gi|254975685|ref|ZP_05272157.1| hypothetical protein CdifQC_10259 [Clostridium difficile
          QCD-66c26]
 gi|255093071|ref|ZP_05322549.1| hypothetical protein CdifC_10524 [Clostridium difficile CIP
          107932]
 gi|255101226|ref|ZP_05330203.1| hypothetical protein CdifQCD-6_10504 [Clostridium difficile
          QCD-63q42]
 gi|255307102|ref|ZP_05351273.1| hypothetical protein CdifA_10967 [Clostridium difficile ATCC
          43255]
 gi|255314814|ref|ZP_05356397.1| hypothetical protein CdifQCD-7_10717 [Clostridium difficile
          QCD-76w55]
 gi|255517488|ref|ZP_05385164.1| hypothetical protein CdifQCD-_10301 [Clostridium difficile
          QCD-97b34]
 gi|255650599|ref|ZP_05397501.1| hypothetical protein CdifQCD_10481 [Clostridium difficile
          QCD-37x79]
 gi|115251150|emb|CAJ68981.1| putative DNA-binding protein [Clostridium difficile]
          Length = 328

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          I++     I +++E   +S   + + L+ L K G+ ++  +GR GG R
Sbjct: 14 INDKQKFTIKELSEEFNLSAKTIQRYLKELNKMGLPIQAEQGRNGGYR 61


>gi|157692743|ref|YP_001487205.1| bifunctional transcriptional
          regulator/biotin--[acetyl-CoA-carboxylase] ligase
          [Bacillus pumilus SAFR-032]
 gi|157681501|gb|ABV62645.1| bifunctional transcriptional
          regulator/biotin--[acetyl-CoA-carboxylase] ligase
          [Bacillus pumilus SAFR-032]
          Length = 327

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79
              QI +    S   ++K ++ L K G  VE VR +  G RL R  D+I+  +++
Sbjct: 21 VSSQQICDELGCSRTAVWKHMEDLRKEGYEVEAVRRK--GYRLLRKPDKISEDEIL 74


>gi|21228473|ref|NP_634395.1| hypothetical protein MM_2371 [Methanosarcina mazei Go1]
 gi|20906955|gb|AAM32067.1| conserved protein [Methanosarcina mazei Go1]
          Length = 291

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           L+      D   +  +IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 13 ALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYK 65


>gi|213026899|ref|ZP_03341346.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           + +V+ A +ES     C             C   ++ R   +     L   ++  LV N+
Sbjct: 1   VGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQ 58

Query: 135 SSI 137
             +
Sbjct: 59  EVL 61


>gi|168211098|ref|ZP_02636723.1| HTH domain family [Clostridium perfringens B str. ATCC 3626]
 gi|170710887|gb|EDT23069.1| HTH domain family [Clostridium perfringens B str. ATCC 3626]
          Length = 316

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +R+LM     +    ++ +IAE   +SE  + +  + L +   +E+  G  GG  L
Sbjct: 8  LRMLMML--RSGRKLKVKEIAEELEVSEKQVKRYKEALSEFFYIESRSGIDGGYIL 61


>gi|253577528|ref|ZP_04854841.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral
          taxon 786 str. D14]
 gi|251843068|gb|EES71103.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral
          taxon 786 str. D14]
          Length = 327

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          R+L     H        +++    IS   ++K +  L + G   E+   R  G RL R  
Sbjct: 6  RLLDMLLEHPGQYISGEELSRRLSISRTAVWKQIAKLREEGYEFESAPRR--GYRLTRQP 63

Query: 71 DQITILDVVKATEES 85
          D+++   ++ A + +
Sbjct: 64 DKLSHAGLLHALQGT 78


>gi|326383513|ref|ZP_08205200.1| Helix-turn-helix type 11 domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326197919|gb|EGD55106.1| Helix-turn-helix type 11 domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 325

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R L   A+          ++A+    +E  + + ++ L + G  VE+VRG  GG +L 
Sbjct: 7  RTLKLLALLQAHRLWSAIELADRLETTERTVRRDVERLRELGYPVESVRGSGGGYQLA 64


>gi|307710037|ref|ZP_07646482.1| hypothetical protein SMSK564_1312 [Streptococcus mitis SK564]
 gi|307619222|gb|EFN98353.1| hypothetical protein SMSK564_1312 [Streptococcus mitis SK564]
          Length = 88

 Score = 43.4 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG 62
          ++  A H ++     +IA+   +S   + K  + L +AG +  VR    GR G
Sbjct: 1  MVVLANHPNWQVYPEEIAKRKGVSRPTISKYFKILEEAGYLRQVRRKPPGRGG 53


>gi|257053832|ref|YP_003131665.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940]
 gi|256692595|gb|ACV12932.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940]
          Length = 177

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          L+     ++   +  +IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 17 LVNLYRDSESAVKGEEIAERVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|218232869|ref|YP_002367529.1| hypothetical DNA-binding protein [Bacillus cereus B4264]
 gi|218160826|gb|ACK60818.1| hypothetical DNA-binding protein [Bacillus cereus B4264]
          Length = 314

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          IR++   A++N+      ++A++  +SE  + + +Q L +    V + RGR GG 
Sbjct: 8  IRIM--LALNNNNSITAKELAKSEGVSERTILRDIQELSEIYFPVYSERGRNGGF 60


>gi|282864017|ref|ZP_06273074.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
 gi|282561095|gb|EFB66640.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
          Length = 345

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +  +     +S++AE   + E  + + +  L+   + VE+VRGR GG RL 
Sbjct: 14 RVLTLLELLQSGGVRTVSELAERLDVDERTVRRYVGHLLDLDVPVESVRGRYGGYRLT 71


>gi|290961721|ref|YP_003492903.1| GntR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260651247|emb|CBG74369.1| putative GntR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 248

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +      ++AE   IS + L ++L+ L   G++E  RGR GG
Sbjct: 49 GERLPAERELAERLGISRVTLREVLKVLQDQGLIEARRGRYGG 91


>gi|294625998|ref|ZP_06704608.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          11122]
 gi|294664201|ref|ZP_06729581.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          10535]
 gi|292599668|gb|EFF43795.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          11122]
 gi|292606026|gb|EFF49297.1| repressor [Xanthomonas fuscans subsp. aurantifolii str. ICPB
          10535]
          Length = 321

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                    +AE   I    L + ++ L +AG  V    G  GG RL + A  + +L  
Sbjct: 16 QGGRSWSGMALAERLGIHPRSLRRDIERLREAGYPVHAAPGSGGGYRLGQGAAALPLL-- 73

Query: 79 VKATEESFFVA 89
              EE   + 
Sbjct: 74 ---LEEDEALT 81


>gi|222479367|ref|YP_002565604.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC
          49239]
 gi|222452269|gb|ACM56534.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC
          49239]
          Length = 177

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+      +   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 14 LTALINLYGEQEDAVKGEAIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|284029300|ref|YP_003379231.1| GntR domain-containing protein [Kribbella flavida DSM 17836]
 gi|283808593|gb|ADB30432.1| GntR domain protein [Kribbella flavida DSM 17836]
          Length = 247

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV----RLCRP 69
           +       +A    +S + L + ++ L +AG VE+ RGR GG     RL RP
Sbjct: 40 GERLPAERDLAARLNVSRVTLREAIRALTEAGYVESRRGRYGGTFVNERLPRP 92


>gi|256376972|ref|YP_003100632.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM
          43827]
 gi|255921275|gb|ACU36786.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM
          43827]
          Length = 326

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
              Q+A+   ++E    + +  L +AG+ VE+ RG  GG R+ R A 
Sbjct: 24 TTARQLADRLGVTERAARRYVGVLREAGVPVESERGPHGGYRIRRGAR 71


>gi|253744028|gb|EET00289.1| Hypothetical protein GL50581_2477 [Giardia intestinalis ATCC
          50581]
          Length = 727

 Score = 43.4 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 26 RISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
           I +I++    +  F+ +I + L    G++E+ +G   G  + +     ++ +++K  E 
Sbjct: 13 TIDEISQRQDATMRFVERIAKQLGHLKGVLESSQGPFPGPNMTKSELTTSLGEILKYIEA 72

Query: 85 SF 86
          + 
Sbjct: 73 NL 74


>gi|53805091|ref|YP_113221.1| ribonuclease BN [Methylococcus capsulatus str. Bath]
 gi|53758852|gb|AAU93143.1| putative ribonuclease BN [Methylococcus capsulatus str. Bath]
          Length = 422

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 18/124 (14%)

Query: 13  VLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLC 67
            LMY  +        P  +  +AE+  + E+   ++L  L + G++  +  GR G     
Sbjct: 306 ALMYLIVRRFMAGQSPPGLPDLAESLNLPEVLTGELLSLLQQTGLIVAIDHGRPG-FLPA 364

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           R    I +L+V +A               +             L  A  +    L   S+
Sbjct: 365 RDPGTIAVLEVFEALRGKADGLPVPEPVALG------------LAAAETSLSAALAGVSL 412

Query: 128 ECLV 131
               
Sbjct: 413 RDWA 416


>gi|320011775|gb|ADW06625.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 257

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 23/123 (18%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCR--PAD---------QITI 75
            ++A    IS + L ++L+ L   G++E  RGR GG   L R  PAD          + +
Sbjct: 65  RELAGLLGISRVTLREVLKVLQDQGLIEARRGRYGGTFVLGRTGPADGDELRRRVADVDL 124

Query: 76  LDVV--KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF------DVLTQYSI 127
            DV+  +   ES     C +    D    G+  L   L     A        D L   ++
Sbjct: 125 EDVLLFREVLESGAAGLCASRGLDD---EGAERLRGALAATHEAPLPDYRRIDTLFHLTL 181

Query: 128 ECL 130
             L
Sbjct: 182 AEL 184


>gi|332796263|ref|YP_004457763.1| putative signal transduction protein with CBS domains [Acidianus
          hospitalis W1]
 gi|332693998|gb|AEE93465.1| putative signal transduction protein with CBS domains [Acidianus
          hospitalis W1]
          Length = 300

 Score = 43.0 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+          +  ++A+     E  +  I+  L   G+VE+  G  GG 
Sbjct: 12 LLALIELYNKGKKMIKSKEVADMIGKDEGTVRNIILGLKVLGLVESKPGPNGGY 65


>gi|311894230|dbj|BAJ26638.1| putative DeoR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 353

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          M   + +      +++     +SE  + + +Q L +AGI V + RGR GG RL 
Sbjct: 9  MALLLQSSPGRTAAELGRELGVSERTVIRDVQALQEAGIPVRSERGRAGGYRLA 62


>gi|262282446|ref|ZP_06060214.1| DeoR-family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262261737|gb|EEY80435.1| DeoR-family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 308

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|157151522|ref|YP_001450277.1| putative transcription regulator [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157076316|gb|ABV10999.1| probable transcription regulator-like protein lin0464, putative
          [Streptococcus gordonii str. Challis substr. CH1]
          Length = 308

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A+ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|110801443|ref|YP_698237.1| hypothetical protein CPR_0913 [Clostridium perfringens SM101]
 gi|110681944|gb|ABG85314.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 317

 Score = 43.0 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +R+LM     +    ++ +IAE   +SE  + +  + L +   +E+  G  GG  L
Sbjct: 8  LRMLMML--RSGRKLKVKEIAEELEVSEKQVKRYKEALSEFFYIESKSGIDGGYIL 61


>gi|54025194|ref|YP_119436.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016702|dbj|BAD58072.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 323

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++AE   +S   L + ++ L + G  V+  RG  GG +L 
Sbjct: 32 ELAERLGVSARTLRRDVERLRELGYPVQAQRGVDGGYQLA 71


>gi|15921694|ref|NP_377363.1| hypothetical protein ST1405 [Sulfolobus tokodaii str. 7]
 gi|15622481|dbj|BAB66472.1| 300aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 300

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+          +  ++A+     E  +  I+  L   G++E+  G  GG 
Sbjct: 12 LLALVDLYNRYKRMIKSKEVADVIGKDEGTVRNIILSLKVLGLIESKPGPNGGY 65


>gi|297562446|ref|YP_003681420.1| hypothetical protein Ndas_3513 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296846894|gb|ADH68914.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 322

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R+L   ++         + +A A  +S   L + +  L + G  VE++RG  G  RL 
Sbjct: 7  RMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDIDRLRELGYAVESLRGPGGHYRLA 64


>gi|89053799|ref|YP_509250.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1]
 gi|88863348|gb|ABD54225.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1]
          Length = 74

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV----LRKALNAFFDVL 122
            RPA +IT+ DV  A   S+   E    +  DC +  +  L  V    ++KA     D L
Sbjct: 2   SRPATEITVADVYIALGMSWTGPEDGEDNPPDCKIEAA--LHGVVDRAMQKAETVLVDEL 59

Query: 123 TQYSIECL 130
              +I  L
Sbjct: 60  AIVTISDL 67


>gi|152967542|ref|YP_001363326.1| GntR family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151362059|gb|ABS05062.1| putative transcriptional regulator, GntR family [Kineococcus
          radiotolerans SRS30216]
          Length = 470

 Score = 43.0 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +R  +  A          ++     +S + + K  + L  AG+VE+  G    VR  RP
Sbjct: 13 LRAWVDTAAPGARLPSNRELVARFAVSPVTVQKAFRRLTAAGLVESRPGVGTFVRGARP 71


>gi|158313706|ref|YP_001506214.1| helix-turn-helix type 11 domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158109111|gb|ABW11308.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec]
          Length = 337

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           VL    +  +     ++++A+   +    + + +Q L+   + VE+VRGR GG RL 
Sbjct: 7  HVLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVQHLIDLDVPVESVRGRYGGYRLA 64


>gi|307323354|ref|ZP_07602564.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306890843|gb|EFN21819.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 360

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +       ++ +A+   + E  + + +  L+   + V +VRGR GG RL 
Sbjct: 8  VLALLEI-LQAGGTRTVADLADRLGVDERTVRRYIGHLIDLDVPVRSVRGRYGGYRLA 64


>gi|160936914|ref|ZP_02084278.1| hypothetical protein CLOBOL_01803 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440104|gb|EDP17851.1| hypothetical protein CLOBOL_01803 [Clostridium bolteae ATCC
           BAA-613]
          Length = 232

 Score = 43.0 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV----KATEE 84
           ++A+   +S   + + +  L   G++E+ +G   G  + +     T+ D++       E+
Sbjct: 33  ELAKTYQVSRSSVRQAISRLKALGLLESRQGS--GTVIKKSGISATLSDIIPTIMFEIED 90

Query: 85  SFFVAECFASHKIDC 99
           +  + E     +I+C
Sbjct: 91  NLQIFEFHKGIQIEC 105


>gi|330834038|ref|YP_004408766.1| signal transduction protein [Metallosphaera cuprina Ar-4]
 gi|329566177|gb|AEB94282.1| signal transduction protein [Metallosphaera cuprina Ar-4]
          Length = 300

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----- 65
          +  L+          +  ++A+     E  +  I+  L   G+V++  G  GG       
Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYLPTLKA 71

Query: 66 --LCRPADQITILD 77
              +    I ILD
Sbjct: 72 YEFVKNPSIIPILD 85


>gi|308175533|ref|YP_003922238.1| helix-turn-helix, type 11 domain-containing protein [Bacillus
          amyloliquefaciens DSM 7]
 gi|307608397|emb|CBI44768.1| helix-turn-helix, type 11 domain-containing protein [Bacillus
          amyloliquefaciens DSM 7]
 gi|328555511|gb|AEB26003.1| helix-turn-helix, type 11 domain-containing protein [Bacillus
          amyloliquefaciens TA208]
 gi|328913882|gb|AEB65478.1| helix-turn-helix, type 11 domain-containing protein [Bacillus
          amyloliquefaciens LL3]
          Length = 309

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 7/68 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M +++        ++Y  + N       ++AE   +S   +++ ++ L +AGI + T++G
Sbjct: 1  MQISRLFQ-----VIYILLENGT-VTAPELAERFEVSVRTIYRDVEALSQAGIPIYTIQG 54

Query: 60 RRGGVRLC 67
          + GG+ L 
Sbjct: 55 KGGGISLS 62


>gi|323357230|ref|YP_004223626.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273601|dbj|BAJ73746.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 102

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          L   +   +  L+     +  P  +  +A+   +S+  + + L+ L +AG+V + R G+ 
Sbjct: 17 LGNESRLALVWLL-----SQEPLTVGALADRAGLSQPLVSQHLRTLRQAGLVNSEREGKE 71

Query: 62 GGVRLCRPADQITILDVVKATEES 85
              L        +LD +   +E 
Sbjct: 72 IRYALADEHVAHVVLDAIAHVQEP 95


>gi|296131311|ref|YP_003638561.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena
          DSM 20109]
 gi|296023126|gb|ADG76362.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena
          DSM 20109]
          Length = 265

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             + +A A  +SE    + +  L  AG+ V + RG  GG RL R
Sbjct: 24 LTAAGLATALGVSERAARRYVAVLRAAGVPVTSERGPYGGYRLGR 68


>gi|46199189|ref|YP_004856.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27]
 gi|46196814|gb|AAS81229.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27]
          Length = 845

 Score = 42.6 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R+L Y A H +      ++A     S    + +L  L++ G V       GG RL R
Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKE---EGGFRLAR 67


>gi|55981218|ref|YP_144515.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8]
 gi|55772631|dbj|BAD71072.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8]
          Length = 844

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R+L Y A H +      ++A     S    + +L  L++ G V       GG RL R
Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKE---EGGFRLAR 67


>gi|301631675|ref|XP_002944923.1| PREDICTED: HTH-type transcriptional regulator lutR-like [Xenopus
          (Silurana) tropicalis]
          Length = 247

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +  D      ++ E   +S   + + L  L   GI+ET RG  G   L R   Q
Sbjct: 40 LPGDRLPSERELCERHGVSRSVVREALSQLKSDGIIETRRG-SGAYLLERDQRQ 92


>gi|15805096|ref|NP_293781.1| repressor protein [Deinococcus radiodurans R1]
 gi|6457714|gb|AAF09645.1|AE001868_7 repressor protein, putative [Deinococcus radiodurans R1]
          Length = 316

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +RVL    +         +++A    +S   + + +  L   GI VE  RG  G  RL
Sbjct: 6  SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRL 64


>gi|284992256|ref|YP_003410810.1| Helix-turn-helix type 11 domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284065501|gb|ADB76439.1| Helix-turn-helix type 11 domain protein [Geodermatophilus
          obscurus DSM 43160]
          Length = 335

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          + +A+   +S   L + +  L + G  VE  RG  GG +L 
Sbjct: 24 ADLADRLGVSVRTLRRDVDRLRELGYPVEAQRGVDGGYQLA 64


>gi|119718542|ref|YP_925507.1| helix-turn-helix, type 11 domain-containing protein [Nocardioides
          sp. JS614]
 gi|119539203|gb|ABL83820.1| Helix-turn-helix, type 11 domain protein [Nocardioides sp. JS614]
          Length = 327

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +R+L     H  +P   +++A    +S   L + +  L + G  V+ VRG  GG +L
Sbjct: 15 LRLLSLLQTHRYWPG--AELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQL 69


>gi|83858538|ref|ZP_00952060.1| putative transcriptional regulator [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853361|gb|EAP91213.1| putative transcriptional regulator [Oceanicaulis alexandrii
          HTCC2633]
          Length = 235

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          I  +A+   +SE  L + L  L + G+ +ET RGR GGVRL R
Sbjct: 19 IKDLAKTHGVSERTLTRDLALLREQGLPIETDRGRGGGVRLDR 61


>gi|288940217|ref|YP_003442457.1| ribonuclease BN [Allochromatium vinosum DSM 180]
 gi|288895589|gb|ADC61425.1| ribonuclease BN [Allochromatium vinosum DSM 180]
          Length = 439

 Score = 42.6 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L+       R   + A     P     +A+A       +   L  L +AG +        
Sbjct: 320 LSIAARIA-RA--HLAAEP--PLDRETLAKAARQPARTIQTTLDLLEQAGYIVRTAEAPA 374

Query: 63  GVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           G  L RP + I +LD+++         V         D P+  +  + ++  +   A  +
Sbjct: 375 GYVLTRPPEAIAVLDILERVRQWGEHRVV------AADRPVEPA--IAAIESRIETALAE 426

Query: 121 VLTQYSIECLVRN 133
            L   S+  L   
Sbjct: 427 SLKDLSLRDLAAE 439


>gi|295835806|ref|ZP_06822739.1| transcriptional regulatory protein [Streptomyces sp. SPB74]
 gi|295825709|gb|EFG64416.1| transcriptional regulatory protein [Streptomyces sp. SPB74]
          Length = 283

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 10  GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67
            +R  +    +          +AE   +S   + + +Q L   G VETV     G R L 
Sbjct: 96  ALRAALDSGELEPGRVYSAPALAERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 153

Query: 68  RPADQIT-ILDVVKATE 83
           R   + + + +V+   E
Sbjct: 154 RTPAEASALAEVLLLIE 170


>gi|194016904|ref|ZP_03055517.1| biotin-[acetyl-CoA-carboxylase] ligase [Bacillus pumilus ATCC
          7061]
 gi|194011510|gb|EDW21079.1| biotin-[acetyl-CoA-carboxylase] ligase [Bacillus pumilus ATCC
          7061]
          Length = 327

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79
              QI +    S   ++K ++ L K G  VE VR +  G RL R  D+I+  +++
Sbjct: 21 VSSQQICDELGCSRTAVWKHIEDLRKEGYEVEAVRRK--GYRLLRKPDKISEDEIL 74


>gi|134099902|ref|YP_001105563.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
 gi|291006060|ref|ZP_06564033.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
 gi|133912525|emb|CAM02638.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
          Length = 315

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +       ++++AE   + E  + + +  L+   I V +VRGR GG RL 
Sbjct: 5  LQRGGTWTVAELAERLDVDERTVRRYVGHLLDLDIPVRSVRGRHGGYRLS 54


>gi|150376176|ref|YP_001312772.1| GntR domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030723|gb|ABR62839.1| GntR domain protein [Sinorhizobium medicae WSM419]
          Length = 243

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++AE   +S   + + L  L   G+VE  RG  G   L RP
Sbjct: 47 ELAERFGVSRPVVREALARLRVDGLVEARRG-SGTYVLSRP 86


>gi|83950931|ref|ZP_00959664.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
 gi|83838830|gb|EAP78126.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
          Length = 233

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-------TILDVVK 80
            +AE+  +S   +   L  L   GIV++ RG  G   L RP  ++       ++ DV +
Sbjct: 36 EALAESFGVSRPIVRGALSRLRDDGIVQSRRG-SGSYVLRRPDRELISFVPLESVSDVQR 94

Query: 81 ATE 83
            E
Sbjct: 95 CYE 97


>gi|303243770|ref|ZP_07330111.1| putative signal transduction protein with CBS domains
          [Methanothermococcus okinawensis IH1]
 gi|302486012|gb|EFL48935.1| putative signal transduction protein with CBS domains
          [Methanothermococcus okinawensis IH1]
          Length = 312

 Score = 42.6 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 18 LIAIYREKNRPVKGTEIAIRLNRNPGTIRNQMQALRALNLVDGVPGPKGGY 68


>gi|297160229|gb|ADI09941.1| IclR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 253

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
            + +RVL     H+      + IA    +    L ++L+ L + G VE V    G  
Sbjct: 14 VRHALRVL-EVVSHHTNGVTDAGIARETGLPPAHLAQLLRMLRREGYVEQV--ADGAY 68


>gi|56477733|ref|YP_159322.1| IclR family transciptional regulator [Aromatoleum aromaticum
          EbN1]
 gi|56313776|emb|CAI08421.1| putative transcription regulator protein, IclR family
          [Aromatoleum aromaticum EbN1]
          Length = 263

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +++L   A H D P  + QIA+   +      +IL  + ++G VE  RG  G  RL    
Sbjct: 21 MKLLDVLAHHPD-PAPLKQIAQETGLHPSTAHRILGAMSQSGFVE--RGEGGTYRLG--- 74

Query: 71 DQITILDV 78
            I +L++
Sbjct: 75 --IRLLEL 80


>gi|163744181|ref|ZP_02151541.1| probable transcriptional regulator protein, GntR family
          [Oceanibulbus indolifex HEL-45]
 gi|161380999|gb|EDQ05408.1| probable transcriptional regulator protein, GntR family
          [Oceanibulbus indolifex HEL-45]
          Length = 221

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-------TILDVVKAT 82
          +AE+  +S   +   L  L   GIV++ RG  G   L RP  ++       ++ DV +  
Sbjct: 26 LAESFGVSRPVVRGALSRLRDDGIVQSRRG-SGSYVLRRPDRELISFVPLESVSDVQRCY 84

Query: 83 E 83
          E
Sbjct: 85 E 85


>gi|220930914|ref|YP_002507822.1| biotin (acetyl-CoA carboxylase) synthetase [Halothermothrix
          orenii H 168]
 gi|219992224|gb|ACL68827.1| biotin (acetyl-CoA carboxylase) synthetase [Halothermothrix
          orenii H 168]
          Length = 326

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
             +N        I++   +S   ++K ++ L K G  +E+V  R  G  L    D+IT+
Sbjct: 14 LHNNNGKFISGENISDTLGVSRTAVWKYIKNLRKKGYIIESVPRR--GYHLVEVPDKITV 71

Query: 76 LDVV 79
           +V+
Sbjct: 72 TEVL 75


>gi|288931195|ref|YP_003435255.1| signal transduction protein with CBS domains [Ferroglobus
          placidus DSM 10642]
 gi|288893443|gb|ADC64980.1| putative signal transduction protein with CBS domains
          [Ferroglobus placidus DSM 10642]
          Length = 295

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          Y +  L           +  +IAE    +   +   +Q L   G+VE V G +GG R
Sbjct: 12 YALVTLYK--KKGGGSVKGEEIAELINRNPGTVRNQMQALRALGLVEGVPGPKGGYR 66


>gi|218512491|ref|ZP_03509331.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 81

 Score = 42.6 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 81  ATEESFFVAECFA-SHKIDCPLVG-----SCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           A E       C        C   G      C +  ++ +A  A+ + L +  +  LV + 
Sbjct: 1   AVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWRETLRRVRLSDLVDSL 60

Query: 135 SS 136
           S 
Sbjct: 61  SQ 62


>gi|108799028|ref|YP_639225.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868143|ref|YP_938095.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126434631|ref|YP_001070322.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108769447|gb|ABG08169.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
 gi|119694232|gb|ABL91305.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
 gi|126234431|gb|ABN97831.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
          Length = 240

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             +      ++A    +S   + + ++ L +AG + + RGR GG  L   
Sbjct: 41 APGESLPPERELAARLGVSRDTVREAIKSLAEAGYLVSRRGRYGGTFLAEE 91


>gi|320449824|ref|YP_004201920.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01]
 gi|320149993|gb|ADW21371.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01]
          Length = 843

 Score = 42.6 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           +R+L Y A H +    + ++A     S    + +L  L + G  V+T RG     RL +
Sbjct: 13 ALRILAYLAEHPEG-VEVKEVARLLGKSLSTAYALLNSLAEEGFAVKTERG----YRLGQ 67

Query: 69 P 69
           
Sbjct: 68 A 68


>gi|169828096|ref|YP_001698254.1| hypothetical protein Bsph_2573 [Lysinibacillus sphaericus C3-41]
 gi|168992584|gb|ACA40124.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 46

 Score = 42.2 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           P  + Q+ E+  +S  +L KIL  LVKAG++E++
Sbjct: 11 EPIGVQQLVESQGVSTTYLSKILTNLVKAGMIESI 45


>gi|307325408|ref|ZP_07604610.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306888877|gb|EFN19861.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 249

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
                      ++A+   IS + L ++L+ L   G+VE+ RGR GG
Sbjct: 44 LVPDGGRLPAERELADRLRISRVTLREVLKVLQDQGLVESRRGRYGG 90


>gi|32140298|gb|AAP69588.1| putative repressor [Streptomyces griseoflavus]
          Length = 341

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R L   ++           +AE   +S   + + +  L + G  V   +G  G  RL R 
Sbjct: 5  RTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDINRLRELGYPVTATKGPSGSYRLSRG 64

Query: 70 AD 71
          A 
Sbjct: 65 AR 66


>gi|84497334|ref|ZP_00996156.1| putative DeoR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
 gi|84382222|gb|EAP98104.1| putative DeoR-family transcriptional regulator [Janibacter sp.
           HTCC2649]
          Length = 324

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 18/96 (18%)

Query: 12  RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR---- 65
           R+L     +        +++A    + E  + K ++ L + G  +++VRG  GG R    
Sbjct: 7   RLLAMLGQLQARDIVSGTELAARLDVGERTIRKDIERLRELGYPIDSVRGPAGGYRFGDH 66

Query: 66  -----LCRPADQ-----ITILDV--VKATEESFFVA 89
                L    D+     + +  V  V+  EES  +A
Sbjct: 67  GRLPPLLLEPDEAVAVAVGLGSVAAVRGIEESSALA 102


>gi|256810527|ref|YP_003127896.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus fervens AG86]
 gi|256793727|gb|ACV24396.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus fervens AG86]
          Length = 297

 Score = 42.2 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64


>gi|78223975|ref|YP_385722.1| ribonuclease BN [Geobacter metallireducens GS-15]
 gi|78195230|gb|ABB32997.1| tRNA-processing RNAse BN [Geobacter metallireducens GS-15]
          Length = 453

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 8   DYGIRVLMY---CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
              +  ++Y    A HND P   I+ +AE   + E  + ++L+ L   G++    G    
Sbjct: 318 RLAL-AVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPL 376

Query: 64  VRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
               R  + I + +V+ +   +      +      +         +  +      A    
Sbjct: 377 YLPARDLEHIRVGEVLSSLRNQGVGLPGQLGGEDHV--------VVDDLWEAIEAAVRSA 428

Query: 122 LTQYSIECLVRN 133
           L   S   L   
Sbjct: 429 LGDLSFRDLAER 440


>gi|295839828|ref|ZP_06826761.1| transcriptional regulator [Streptomyces sp. SPB74]
 gi|295827667|gb|EFG65527.1| transcriptional regulator [Streptomyces sp. SPB74]
          Length = 173

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
                +      ++AE   +S   L ++L  L   G+ E+ RGR GG
Sbjct: 56  LVAPGERLPPERELAERLRVSRATLREVLAVLHAEGLAESRRGRYGG 102


>gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1]
 gi|116062605|dbj|BAA79958.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 299

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 1  MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M  LT      +  L+     +    +  ++AEA    E  +  ++  L   G+VE+  G
Sbjct: 1  MKMLTSLQREVLETLVSLYERHKRMIKSKEVAEALGKDEGTVRNVIMWLKSLGLVESRTG 60

Query: 60 RRGGVR 65
            GG  
Sbjct: 61 PAGGYM 66


>gi|126725720|ref|ZP_01741562.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126704924|gb|EBA04015.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 107

 Score = 42.2 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D       I      +   + ++L  L  A              L R  + I + DV 
Sbjct: 7   NPDRLRISLDITNHAGANPAAVRRVLGRLRIA--------------LARHPESIILADVY 52

Query: 80  KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECL 130
            A +ES    +        C +      C L SV+ +   +      + ++  +
Sbjct: 53  LALDESLIATD-GDQQASTCSVDYALQRCVL-SVMDEIEQSVIQHRGKTTLSEV 104


>gi|327401594|ref|YP_004342433.1| biotin/acetyl-CoA-carboxylase ligase [Archaeoglobus veneficus
          SNP6]
 gi|327317102|gb|AEA47718.1| biotin/acetyl-CoA-carboxylase ligase [Archaeoglobus veneficus
          SNP6]
          Length = 309

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +  R D     L         P    +IA    +S   ++K ++ L KAG V   R +
Sbjct: 1  MKIVVRRDDA--ALAVLKSLKKGPVSGEEIATKLGVSRTAVWKAVEKLKKAGYVIDAR-K 57

Query: 61 RGGVRLCRPAD--QITILDV 78
          R G  L    +     + DV
Sbjct: 58 RVGYVLVSSPEFSAYEVADV 77


>gi|76802391|ref|YP_327399.1| hypothetical protein NP3506A [Natronomonas pharaonis DSM 2160]
 gi|76558256|emb|CAI49844.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 179

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          L+     ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 17 LINLYRESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|289192335|ref|YP_003458276.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus sp. FS406-22]
 gi|288938785|gb|ADC69540.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus sp. FS406-22]
          Length = 298

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64


>gi|121607951|ref|YP_995758.1| GntR domain-containing protein [Verminephrobacter eiseniae EF01-2]
 gi|121552591|gb|ABM56740.1| transcriptional regulator, GntR family [Verminephrobacter eiseniae
           EF01-2]
          Length = 270

 Score = 42.2 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------------VRLCR 68
           +D    + Q+A+A  +S+  + + L+ L+KA IV   RGR GG            + L  
Sbjct: 61  DDRLPSVEQLAQAMNVSKPVIGEALKVLIKAKIVRVQRGRSGGLFVLTNNVPDGVLALTA 120

Query: 69  PADQITILDVVKA 81
               +++ ++++A
Sbjct: 121 QLRHVSLSEIIEA 133


>gi|172039710|ref|YP_001799424.1| ArsR family transcriptional regulator [Corynebacterium
          urealyticum DSM 7109]
 gi|171851014|emb|CAQ03990.1| putative transcriptional regulator (ArsR family) [Corynebacterium
          urealyticum DSM 7109]
          Length = 115

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A     P  + ++ E   +S+  +   L+ L +AG++E VR
Sbjct: 44 LRLLSRLAAEGCGPVSVGELTERSGLSQPTVSHHLKRLTEAGLLEKVR 91


>gi|331697835|ref|YP_004334074.1| regulatory protein DeoR [Pseudonocardia dioxanivorans CB1190]
 gi|326952524|gb|AEA26221.1| regulatory protein DeoR [Pseudonocardia dioxanivorans CB1190]
          Length = 319

 Score = 42.2 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R+L   ++   Y +    ++A+   +S   L + ++ L + G  V T RG  GG +L 
Sbjct: 6  RILRLLSLLQTYRHWSGDELAQRLAVSPRTLRRDVERLRELGYPVLTSRGTYGGYQLA 63


>gi|326333775|ref|ZP_08200008.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
 gi|325948357|gb|EGD40464.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
          Length = 318

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            + +A    +SE  +   +  L + G  VE+VRG  G  RL 
Sbjct: 22 TGADLATRLDVSERTVRNDMTKLRELGYPVESVRGPGGRYRLG 64


>gi|289522963|ref|ZP_06439817.1| pur operon repressor [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289503506|gb|EFD24670.1| pur operon repressor [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 263

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFL----FKILQPLVKAGI--V 54
          M +++      R++   A H      +S IA+   +S+  L      I   +   G   +
Sbjct: 1  MKISRPERIA-RIVWRLAKHPSQSFSLSDIAKEFEVSKTVLSDDVEIISNAMNDEGCSRI 59

Query: 55 ETVRGRRGGVRL 66
             RGR GG  L
Sbjct: 60 IIDRGRGGGAYL 71


>gi|290956054|ref|YP_003487236.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260645580|emb|CBG68671.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 371

 Score = 42.2 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R L   A   + P    ++A    +SE  L K L+ L  AG++E  R R G   L R
Sbjct: 294 LRALRLIA---ERPRSTQELAPLVGVSEAALSKHLRVLADAGLLE--RRREGYYVLYR 346


>gi|124003262|ref|ZP_01688112.1| transcriptional regulator, MarR family [Microscilla marina ATCC
          23134]
 gi|123991360|gb|EAY30791.1| transcriptional regulator, MarR family [Microscilla marina ATCC
          23134]
          Length = 323

 Score = 42.2 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
              +++IA    IS   + +I++ L KAG+V ++
Sbjct: 55 ETVSVTEIAHYVGISHPAVSQIIKELKKAGLVSSI 89


>gi|134045572|ref|YP_001097058.1| BadM/Rrf2 family transcriptional regulator [Methanococcus
          maripaludis C5]
 gi|132663197|gb|ABO34843.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus
          maripaludis C5]
          Length = 144

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+   R+L       +  +   +IA A       + + ++ L   G VET +G+
Sbjct: 1  MKIDGLTE---RILTLL----EKYSTTREIAAAMETHPKNIDRYIRVLRDLGFVETKKGK 53

Query: 61 RGGVRLC 67
           GGV L 
Sbjct: 54 TGGVFLT 60


>gi|282865527|ref|ZP_06274578.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
 gi|282559571|gb|EFB65122.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
          Length = 353

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 24 SELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGRAMPP 71


>gi|262039117|ref|ZP_06012450.1| helix-turn-helix, type 11 domain-containing protein [Leptotrichia
          goodfellowii F0264]
 gi|261746906|gb|EEY34412.1| helix-turn-helix, type 11 domain-containing protein [Leptotrichia
          goodfellowii F0264]
          Length = 296

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +  + +L+     N       ++AE   +S   +++ ++ L  AGI V + RG
Sbjct: 1  MQINRLFE-TVHMLL-----NKKSMTARELAEHFEVSIRTVYRDIETLTFAGIPVYSTRG 54

Query: 60 RRGGVRL 66
          + GG++L
Sbjct: 55 KNGGIKL 61


>gi|126179865|ref|YP_001047830.1| signal transduction protein [Methanoculleus marisnigri JR1]
 gi|125862659|gb|ABN57848.1| putative signal transduction protein with CBS domains
          [Methanoculleus marisnigri JR1]
          Length = 293

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69
          +  L+     + +  +  +IAE    +   +   +Q L   G+V+ V G +GG       
Sbjct: 11 LITLITLYHQSSHSIKGEEIAEVLKRNPGTVRNQMQALKALGLVDGVPGPKGGYSPTAGA 70

Query: 70 ADQITILDV 78
            ++ + D+
Sbjct: 71 YRELNLGDL 79


>gi|15669417|ref|NP_248227.1| hypothetical protein MJ_1232 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496164|sp|Q58629|Y1232_METJA RecName: Full=Uncharacterized protein MJ1232
 gi|1591864|gb|AAB99237.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
          2661]
          Length = 296

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64


>gi|322375947|ref|ZP_08050458.1| HTH domain protein [Streptococcus sp. C300]
 gi|321279215|gb|EFX56257.1| HTH domain protein [Streptococcus sp. C300]
          Length = 308

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLSLSNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|281356405|ref|ZP_06242897.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
          BAA-548]
 gi|281317097|gb|EFB01119.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
          BAA-548]
          Length = 253

 Score = 41.9 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          R+L + +   D P ++ ++AE   IS      I++ + + G V  + GRR G  
Sbjct: 10 RILEHLSAAPDRPCQLGELAELLNISAPAAANIVRAMTELGYVRAL-GRRRGYL 62


>gi|291003751|ref|ZP_06561724.1| DeoR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 312

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
             +        +++A    +SE  + + +  L +AG+ V + RGR GG RL
Sbjct: 1  MLLLQARETMTAAELARELEVSERTITRDVLALSEAGVPVYSERGRGGGYRL 52


>gi|239978540|ref|ZP_04701064.1| GntR family transcriptional regulator [Streptomyces albus J1074]
 gi|291450436|ref|ZP_06589826.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291353385|gb|EFE80287.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 253

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
               +      ++AE   +S + L ++L+ L   G+VE  RGR GG
Sbjct: 52 LVPAGERLPAERELAERIGVSRVTLREVLKALQDQGLVEPRRGRYGG 98


>gi|296134276|ref|YP_003641523.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
 gi|296032854|gb|ADG83622.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens
          JR]
          Length = 76

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%)

Query: 1  MHLTK--RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M + K  RT Y              P     I+    ++  ++ +  + L   G++   R
Sbjct: 13 MRILKENRTSYA------------NPMNSWAISRRLNVTPSYIREQAKQLSDRGLLNVRR 60

Query: 59 GRRGGV 64
          G  GG 
Sbjct: 61 GPGGGY 66


>gi|271962526|ref|YP_003336722.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505701|gb|ACZ83979.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 360

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++A+   +SE  L + +  L + G  V   RG  GG +L 
Sbjct: 25 ELADRLGVSERTLRRDVDRLRELGYPVSAARGTDGGYQLA 64


>gi|257387229|ref|YP_003177002.1| hypothetical protein Hmuk_1169 [Halomicrobium mukohataei DSM 12286]
 gi|257169536|gb|ACV47295.1| Protein of unknown function DUF293 [Halomicrobium mukohataei DSM
           12286]
          Length = 176

 Score = 41.9 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA-- 70
            D P    Q+AE    S   +   L  L   G+VE+V+G  GG          + R    
Sbjct: 26  ADGPVTSGQVAEILDRSSGTVQNQLTTLQSIGLVESVQGPTGGYEPTPAAFAAIGREPMD 85

Query: 71  --DQITI---LDVVKATEESFFVAECFASHKIDC 99
             + +T+    D + AT E   +      H  +C
Sbjct: 86  DAETVTVSQAFDRIDATVEEIDLTN--VHHPTEC 117


>gi|126464384|ref|YP_001045497.1| regulatory protein GntR, HTH [Rhodobacter sphaeroides ATCC 17029]
 gi|126106195|gb|ABN78725.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 248

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 27/53 (50%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +     +++AE   +S+  + + ++ L    ++ + RG +GGV +  P+  I
Sbjct: 30 AERLPSEAELAERFDVSQPTVREAMKILAAKKLIRSKRGPKGGVFVNPPSLDI 82


>gi|302526543|ref|ZP_07278885.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302435438|gb|EFL07254.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 250

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVR 65
           G+  L   A   D P  I ++A    +     ++I++ L   G+V  VRG  G    G R
Sbjct: 48  GLTALEVLA-DADTPLSIGELAARLGLHRSITYRIVRTLEDHGLV--VRGANGELELGAR 104

Query: 66  LCRPADQIT 74
           L   A  ++
Sbjct: 105 LAALARNVS 113


>gi|284993360|ref|YP_003411915.1| hypothetical protein Gobs_5016 [Geodermatophilus obscurus DSM
          43160]
 gi|284066606|gb|ADB77544.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
          43160]
          Length = 95

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR 61
           VL+  A   D   R+ +IA    I+   +  IL+ L +AG V  + RGRR
Sbjct: 17 HVLLAVAADPD--VRVEEIAARVGITSRAVLAILRDLEEAGYVTRSRRGRR 65


>gi|221370142|ref|YP_002521238.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides
          KD131]
 gi|221163194|gb|ACM04165.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides
          KD131]
          Length = 248

 Score = 41.9 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 27/53 (50%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +     +++AE   +S+  + + ++ L    ++ + RG +GGV +  P+  I
Sbjct: 30 AERLPSEAELAERFDVSQPTVREAMKILAAKKLIRSKRGPKGGVFVNPPSLDI 82


>gi|297154977|gb|ADI04689.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 332

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++AE   ++   + + ++ L   G  V+  +G  GG +L 
Sbjct: 14 RVLTLLGLLQQRRVWTGPELAERLGVTPRTVRRDVERLRALGYPVQATQGVGGGYQLG 71


>gi|307331499|ref|ZP_07610614.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306882877|gb|EFN13948.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 320

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +++A+   +S   L + +  L + G  VE  RG  GG +L 
Sbjct: 24 TELADRLGVSVRTLRRDVDRLRELGYPVEAQRGVDGGYQLA 64


>gi|327310932|ref|YP_004337829.1| hypothetical protein TUZN_1036 [Thermoproteus uzoniensis 768-20]
 gi|326947411|gb|AEA12517.1| hypothetical protein TUZN_1036 [Thermoproteus uzoniensis 768-20]
          Length = 192

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRRGGVR 65
           +R L+             ++ E   +SE  L  ++Q L +AG+VE      +GR    R
Sbjct: 16 ALRHLVD----GARYVTFRELVERLGVSERRLRSVVQELRRAGLVEAYLDPSKGRAILYR 71

Query: 66 LC 67
          L 
Sbjct: 72 LS 73


>gi|120611257|ref|YP_970935.1| GntR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589721|gb|ABM33161.1| transcriptional regulator, GntR family [Acidovorax citrulli
           AAC00-1]
          Length = 270

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG---------RRG 62
           R L+      D     S+I  A  +S   + + +  L  AG+VET  G           G
Sbjct: 46  RALV----PGDKLPTESEIMRAHDVSRTVVREAISRLQAAGLVETRHGIGTFVLPPRAGG 101

Query: 63  GVRLCRPADQITI-LDVVKATE 83
           G RL     +++   DV+   E
Sbjct: 102 GFRL--DPSELSTSADVLAVLE 121


>gi|256376212|ref|YP_003099872.1| GntR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255920515|gb|ACU36026.1| GntR domain protein [Actinosynnema mirum DSM 43827]
          Length = 233

 Score = 41.9 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           D       +A    +S   L + L+ L   G VE+ RGR GG
Sbjct: 37 GDRLPAERDLAARLGVSRATLREALKSLQDNGYVESRRGRYGG 79


>gi|261402995|ref|YP_003247219.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus vulcanius M7]
 gi|261369988|gb|ACX72737.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus vulcanius M7]
          Length = 296

 Score = 41.9 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LINLYREKNRPIKGTEIALRLNRNPGTIRNQMQALRALDLVDGVPGPKGGY 64


>gi|16120256|ref|NP_395844.1| hypothetical protein VNG6357H [Halobacterium sp. NRC-1]
 gi|169237622|ref|YP_001690825.1| hypothetical protein OE6031R [Halobacterium salinarum R1]
 gi|10584392|gb|AAG20979.1| Vng6357h [Halobacterium sp. NRC-1]
 gi|167728399|emb|CAP15208.1| hypothetical protein OE6031R [Halobacterium salinarum R1]
          Length = 196

 Score = 41.9 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
           +   H   P     +A+    +     K L  L   G VET  G +GG    R  + + +
Sbjct: 33  HVVAHTYSPVSADAVADDARTAPKTARKHLNTLADEGFVETTPGEQGGTLYRRSPESLVV 92

Query: 76  ---LDVVKATEESFFVAE 90
               D+++       V  
Sbjct: 93  EQAADILEHVSTDELVTR 110


>gi|197121149|ref|YP_002133100.1| ribonuclease BN [Anaeromyxobacter sp. K]
 gi|196170998|gb|ACG71971.1| ribonuclease BN [Anaeromyxobacter sp. K]
          Length = 439

 Score = 41.9 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 12  RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           R L+  A   D          +A     +     + L  L +  IV ++    GG+   R
Sbjct: 300 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAALRQRAIVVSL--ADGGLVPAR 357

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           P ++IT+LDV +A                         L+ +L    +     L   +  
Sbjct: 358 PLEKITLLDVRRAVSGREA------------RPDERGILSEILTDLESKAAGQLDAITFR 405

Query: 129 CLVRNRSS 136
            L     +
Sbjct: 406 DLCDRERA 413


>gi|146304862|ref|YP_001192178.1| signal transduction protein [Metallosphaera sedula DSM 5348]
 gi|145703112|gb|ABP96254.1| putative signal transduction protein with CBS domains
          [Metallosphaera sedula DSM 5348]
          Length = 300

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +  L+          +  ++A+     E  +  I+  L   G+V++  G  GG  
Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYL 66


>gi|150389956|ref|YP_001320005.1| helix-turn-helix, type 11 domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149949818|gb|ABR48346.1| Helix-turn-helix, type 11 domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 315

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL--CRPAD 71
          MY  +      R+ +IAEA  ++   + K  Q L  AG  V +  GR GG  L   R  D
Sbjct: 10 MYFLLQVRGAMRVKEIAEALEVTPRMVKKYKQDLEMAGIYVGSKLGRAGGYYLENKRRLD 69

Query: 72 QITILD 77
           I + +
Sbjct: 70 AIGLTE 75


>gi|172057480|ref|YP_001813940.1| helix-turn-helix type 11 domain-containing protein
          [Exiguobacterium sibiricum 255-15]
 gi|171990001|gb|ACB60923.1| Helix-turn-helix type 11 domain protein [Exiguobacterium
          sibiricum 255-15]
          Length = 295

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR---- 65
          ++V+     +        ++AEAC +S   + + L  L   G  + + RG  GG R    
Sbjct: 6  LKVMRLL--NRQQLLTARELAEACGVSLRTIQRDLLELEANGYPIYSERGPAGGYRVLPN 63

Query: 66 -----LC-RPADQITI 75
               L  R  + IT+
Sbjct: 64 RLLPPLALREQEAITL 79


>gi|329941046|ref|ZP_08290326.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
 gi|329300340|gb|EGG44238.1| transcriptional regulator [Streptomyces griseoaurantiacus M045]
          Length = 332

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 11 IRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          IR+++        P    +++A    +SE  + +  Q L +AGI V   RGR GG RL
Sbjct: 7  IRMVLLL---QGRPVMTAAELARELEVSERTVARDAQALSEAGIPVYADRGRAGGYRL 61


>gi|302551698|ref|ZP_07304040.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302469316|gb|EFL32409.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 329

 Score = 41.9 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +  +     ++++A+   +    + + +  L+   + VE+VRGR GG RL 
Sbjct: 7  RVLTLLELLQSGGTRTVAELADRLGVEGRTVRRYVDQLIDLDVPVESVRGRYGGYRLA 64


>gi|134102286|ref|YP_001107947.1| DeoR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133914909|emb|CAM05022.1| DeoR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 311

 Score = 41.5 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +        +++A    +SE  + + +  L +AG+ V + RGR GG RL
Sbjct: 3  LQARETMTAAELARELEVSERTITRDVLALSEAGVPVYSERGRGGGYRL 51


>gi|291302195|ref|YP_003513473.1| helix-turn-helix type 11 domain-containing protein
          [Stackebrandtia nassauensis DSM 44728]
 gi|290571415|gb|ADD44380.1| Helix-turn-helix type 11 domain protein [Stackebrandtia
          nassauensis DSM 44728]
          Length = 313

 Score = 41.5 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
                   ++AE    S   L + +  L + G  VET RG  G  RL      P 
Sbjct: 9  QGGRSWTGIELAERLSTSPRTLRRDIDRLRELGYPVETTRGPGGHYRLVAGSAMPP 64


>gi|55377338|ref|YP_135188.1| hypothetical protein rrnAC0451 [Haloarcula marismortui ATCC
          43049]
 gi|55230063|gb|AAV45482.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 177

 Score = 41.5 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          L+     ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 17 LVNLYRESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|222080981|ref|YP_002540344.1| transcriptional repressor protein [Agrobacterium radiobacter K84]
 gi|221725660|gb|ACM28749.1| transcriptional repressor protein [Agrobacterium radiobacter K84]
          Length = 271

 Score = 41.5 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +R+L         P  +S+IA+ C +      + L   V+AG+VE   GR G   L R 
Sbjct: 23  ALRLLQAMTTVKG-PLTLSEIAKQCDMPLSKAHRYLASFVQAGLVE-QAGRSGKYNLGRG 80

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           A  + +   + A E   FV          C   G   L +V 
Sbjct: 81  A--VLLG--LAALERHDFVNRAADDLPDLCAETGLTALLAVW 118


>gi|170781232|ref|YP_001709564.1| DeoR family transcriptional regulator [Clavibacter michiganensis
          subsp. sepedonicus]
 gi|169155800|emb|CAQ00922.1| putative DeoR-family transcriptional regulator [Clavibacter
          michiganensis subsp. sepedonicus]
          Length = 328

 Score = 41.5 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            D+P RI  +AE   ++   + + ++ L + G  + +V+G  GG RL   A+
Sbjct: 18 RRDWPGRI--LAERLEVTPRTVRRDVERLRELGYEIRSVKGPDGGYRLAAGAE 68


>gi|291302840|ref|YP_003514118.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572060|gb|ADD45025.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 120

 Score = 41.5 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61
           L+  T   +R++ Y A       R+  + E   +++  + K L  L   G+V +   GR+
Sbjct: 19  LSDETR--LRIVQYLAA---GEARVVDLTEQLGLAQSTVSKHLACLRDCGLVASRAEGRQ 73

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
               L RP     ++D++ A E                  V  C    +
Sbjct: 74  AFYSLSRP----ELMDLLSAAEGVLAATG---------HAVAVCPTHGI 109


>gi|126347875|emb|CAJ89595.1| putative DeoR-family transcriptional regulator [Streptomyces
          ambofaciens ATCC 23877]
          Length = 354

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   L + +  L + G  V  V+G  GG RL
Sbjct: 36 LAERLDVSPRTLRRDVDRLRELGYPVVAVKGPDGGYRL 73


>gi|298243829|ref|ZP_06967636.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297556883|gb|EFH90747.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 336

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +LM             ++AE   +SE  +++ ++ L  AGI + T RG  GG +L 
Sbjct: 9  ILMLL--QTRRHVTAGELAERLEVSERTVYRDVEALSAAGIPIYTERGPGGGCKLT 62


>gi|326781425|ref|ZP_08240690.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
 gi|326661758|gb|EGE46604.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
          Length = 326

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  ++   +        ++++    +SE    + L+ L  AG+ V +VRGR GG RL
Sbjct: 6  LVAVLLL-LQRREQVTAAEVSRELDVSERTARRDLEALAMAGVPVYSVRGRGGGWRL 61


>gi|254387210|ref|ZP_05002476.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194346021|gb|EDX26987.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1]
          Length = 252

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          Y +RVL   A H       +QIA    +  + L  +L  L + G V
Sbjct: 16 YALRVLETIARHTGG-VTNAQIARETGLPAVHLTPMLLMLRREGYV 60


>gi|182440751|ref|YP_001828470.1| DeoR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178469267|dbj|BAG23787.1| putative DeoR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 336

 Score = 41.5 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  ++   +        ++++    +SE    + L+ L  AG+ V +VRGR GG RL
Sbjct: 16 LVAVLLL-LQRREQVTAAEVSRELDVSERTARRDLEALAMAGVPVYSVRGRGGGWRL 71


>gi|311743825|ref|ZP_07717631.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312955|gb|EFQ82866.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
          Length = 120

 Score = 41.5 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 14/76 (18%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR- 60
           L+  T   + +L +     D P  ++++ +        + + L  L +AG+V+  R GR 
Sbjct: 34  LSDTTR--LHLLWHL---GDGPATVTELVDRTGAPRTGVSQHLARLRRAGLVDVTRSGRF 88

Query: 61  -----RGGV--RLCRP 69
                RGG   RL R 
Sbjct: 89  QHYSLRGGHVARLVRE 104


>gi|319442671|ref|ZP_07991827.1| putative transcription regulator [Corynebacterium variabile DSM
          44702]
          Length = 116

 Score = 41.5 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 7  TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          T Y            +R+L   A     P  +  +     IS+  +   L+ LV AG+++
Sbjct: 30 TRYAGLFTALSDPARLRILSEIAAGGCVPVTVGDLTTRVGISQPTVSHHLKKLVDAGLLD 89

Query: 56 TVR 58
           VR
Sbjct: 90 RVR 92


>gi|198284025|ref|YP_002220346.1| putative winged helix family two component transcriptional
           regulator [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248546|gb|ACH84139.1| putative two component transcriptional regulator, winged helix
           family [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 252

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIA-----EACCISELFLFKILQPLVK------ 50
            L++R     R L Y A+H D      +IA         I E  +   +  L K      
Sbjct: 168 RLSRRL---FRFLHYLALHPDRTFSSREIANVLTDGRSLIQENSVAAQVHRLRKCLEKAG 224

Query: 51  -AGIVETVRGRRGGVRLCRPAD 71
            A  +ETV G   G RL  P  
Sbjct: 225 AAEWLETVHGF--GYRLSLPPK 244


>gi|567887|gb|AAD15248.1| putative repressor [Streptomyces peucetius]
          Length = 340

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           N       ++AE   +S   L + ++ L   G  V+ + G  GG RL
Sbjct: 16 QNSRDWPGRKLAERLGVSPRTLRRDVERLRDLGYPVQAIPGVGGGYRL 63


>gi|145595859|ref|YP_001160156.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145305196|gb|ABP55778.1| transcriptional regulator, AraC family [Salinispora tropica
          CNB-440]
          Length = 232

 Score = 41.5 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          V+ +   H D P  ++++A     SE  L ++   L   G+ E VR R    RL   A +
Sbjct: 8  VMAHLERHLDQPVDVAELARIAATSEYHLRRLFSALAGIGLSEYVRRR----RLTVAAAE 63

Query: 73 I-----TILDV 78
          +     ++LD+
Sbjct: 64 VLAGERSLLDI 74


>gi|326778715|ref|ZP_08237980.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
 gi|326659048|gb|EGE43894.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
          Length = 383

 Score = 41.5 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 25 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 71


>gi|261418084|ref|YP_003251766.1| XkdB [Geobacillus sp. Y412MC61]
 gi|319767957|ref|YP_004133458.1| hypothetical protein GYMC52_2949 [Geobacillus sp. Y412MC52]
 gi|261374541|gb|ACX77284.1| XkdB [Geobacillus sp. Y412MC61]
 gi|317112823|gb|ADU95315.1| hypothetical protein GYMC52_2949 [Geobacillus sp. Y412MC52]
          Length = 306

 Score = 41.5 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
             P ++++IA     SE  + + +  L   G +ETVR   G
Sbjct: 52 GGRPVKLAEIAAELGGSERTVKRNIARLKDEGYIETVRAPYG 93


>gi|145224641|ref|YP_001135319.1| regulatory protein GntR, HTH [Mycobacterium gilvum PYR-GCK]
 gi|145217127|gb|ABP46531.1| transcriptional regulator, GntR family [Mycobacterium gilvum
          PYR-GCK]
          Length = 242

 Score = 41.5 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +      ++A    +S   + + ++ L  AG + + RGR GG  L 
Sbjct: 45 GESLPPERELAARLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 91


>gi|295835133|ref|ZP_06822066.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74]
 gi|295825328|gb|EFG64193.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 325

 Score = 41.5 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          M   + +      + +A    +SE  + +  Q L  AGI V + RGR GG  L 
Sbjct: 1  MALLVQSSPGLTAAALARELEVSERTVIRDAQALRDAGIPVRSERGRAGGYHLA 54


>gi|332158836|ref|YP_004424115.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
 gi|331034299|gb|AEC52111.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
          Length = 316

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LTK     +RVL+  A     P  + ++A    +S+  L  IL  L + G++  + G+
Sbjct: 1  MTLTKAE---LRVLLAIA---SGPITLKELASKMNLSKSTLSIILHSLERKGLIN-IEGK 53

Query: 61 R 61
          R
Sbjct: 54 R 54


>gi|284041515|ref|YP_003391855.1| hypothetical protein Cwoe_0044 [Conexibacter woesei DSM 14684]
 gi|283945736|gb|ADB48480.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM
          14684]
          Length = 318

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     +  L+   +    P    ++AE   +S   + + ++ L  +G+ +   RG
Sbjct: 1  MRASR-----LVTLVLL-LQARGPWTADELAERLEVSVRTVHRDVEALRASGVPIRGERG 54

Query: 60 RRGGVRL 66
            GG RL
Sbjct: 55 PAGGYRL 61


>gi|25028735|ref|NP_738789.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259507796|ref|ZP_05750696.1| ArsR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
 gi|23494021|dbj|BAC18989.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259164589|gb|EEW49143.1| ArsR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
          Length = 136

 Score = 41.5 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
           +R+ M  A+H + P+ +S++      S+  + + L+ L  AG+V    RGR+    L +P
Sbjct: 56  LRIQMLVALH-ERPHYVSELVALVGSSQPLVSQHLKVLKAAGLVHADRRGRQMSYSLAQP 114


>gi|251797655|ref|YP_003012386.1| MarR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545281|gb|ACT02300.1| transcriptional regulator, MarR family [Paenibacillus sp. JDR-2]
          Length = 303

 Score = 41.5 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGG 63
          R++   A   +       IA    +S   +   ++ L +AG++ + R  R GG
Sbjct: 24 RIMELLA---EKEMNTKDIAGRMQLSPSIITMHIRKLEQAGLIGSRRVRRNGG 73


>gi|315444973|ref|YP_004077852.1| GntR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315263276|gb|ADU00018.1| transcriptional regulator, GntR family [Mycobacterium sp. Spyr1]
          Length = 242

 Score = 41.5 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +      ++A    +S   + + ++ L  AG + + RGR GG  L 
Sbjct: 45 GESLPPERELAARLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 91


>gi|325282431|ref|YP_004254972.1| putative transcriptional regulator [Deinococcus proteolyticus
          MRP]
 gi|324314240|gb|ADY25355.1| putative transcriptional regulator [Deinococcus proteolyticus
          MRP]
          Length = 317

 Score = 41.5 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +RVL    +         ++++    +S   + + +  L   GI VE  RG  G  RL
Sbjct: 6  SLRVLTVLELLQAREEVTGAELSRRLEVSPRTVQRYIMKLQDLGIPVEGRRGVGGAYRL 64


>gi|182438070|ref|YP_001825789.1| DeoR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178466586|dbj|BAG21106.1| putative DeoR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 387

 Score = 41.1 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 32 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 78


>gi|322421254|ref|YP_004200477.1| ribonuclease BN [Geobacter sp. M18]
 gi|320127641|gb|ADW15201.1| ribonuclease BN [Geobacter sp. M18]
          Length = 447

 Score = 41.1 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 30  IAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +A    I    +   L+ L   G IV+   GR G     R  +Q++I DV+ +       
Sbjct: 339 LAFKLGIPLRIVKSTLEHLRDQGFIVQAGEGR-GSYYPARDLNQVSIADVLLSLRRRGAS 397

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
           A      + +           +L+ +  A  D L   ++  L 
Sbjct: 398 AAIAGEEQAE----------EILKSSEQALTDALGGVTLRDLA 430


>gi|117927555|ref|YP_872106.1| MarR family transcriptional regulator [Acidothermus
          cellulolyticus 11B]
 gi|117648018|gb|ABK52120.1| transcriptional regulator, MarR family [Acidothermus
          cellulolyticus 11B]
          Length = 171

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           LT      +  L       D P    ++A  C + E  + +I+  LV+AG V 
Sbjct: 52 QLTHAGLLALHAL------RDGPLSQRELAARCSVEEQTMSRIVAKLVRAGYVT 99


>gi|332671145|ref|YP_004454153.1| ArsR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340183|gb|AEE46766.1| transcriptional regulator, ArsR family [Cellulomonas fimi ATCC 484]
          Length = 198

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69
           I+ L   +   ++   +S++  A  +    L + L  L +AG+V + R       RL RP
Sbjct: 51  IQALEVLSAAPEHAAPVSELLAATGVEASVLSQHLAVLKRAGVVTSTRSGNAVVYRLGRP 110


>gi|260598358|ref|YP_003210929.1| hypothetical protein CTU_25660 [Cronobacter turicensis z3032]
 gi|260217535|emb|CBA31735.1| unknown protein [Cronobacter turicensis z3032]
          Length = 208

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           I     +S+ ++ K++Q L K G +E  RGR
Sbjct: 167 ITSTTNLSKSYVMKVIQELRKGGYIEIQRGR 197


>gi|291009862|ref|ZP_06567835.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 248

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
             +      ++A    +S + L + ++ L ++G VE+ RGR GG
Sbjct: 45 APGERLPAERELATRLGVSRVTLREAIRALQESGYVESRRGRYGG 89


>gi|320010629|gb|ADW05479.1| transcriptional regulator, IclR family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 252

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y +RVL   + H D     ++I+    +    L  +L  L + G VE
Sbjct: 16 YALRVLESVSTHGDG-VTAARISRETGLPTGHLAPLLLTLRREGYVE 61


>gi|212702255|ref|ZP_03310383.1| hypothetical protein DESPIG_00266 [Desulfovibrio piger ATCC 29098]
 gi|212674318|gb|EEB34801.1| hypothetical protein DESPIG_00266 [Desulfovibrio piger ATCC 29098]
          Length = 1045

 Score = 41.1 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 9    YGIRVLMYC-AIHNDYPNRISQIAEACCISELF---LFKILQPLVKAGIVETVRGRRGGV 64
            Y +  L    A  ++  +    IA    + E F   L ++L+ L + G++   R   G  
Sbjct: 957  YALEALTDLGAFPDEGFHTARDIAARIGLPERFDQLLPRLLENLAEQGLLA--RDAAGSY 1014

Query: 65   RLCRPAD 71
               RPA 
Sbjct: 1015 --GRPAA 1019


>gi|182434384|ref|YP_001822103.1| hypothetical protein SGR_591 [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178462900|dbj|BAG17420.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 550

 Score = 41.1 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           +R+L+  A   D    +  +AEA  +    + + +  LVK G+V +
Sbjct: 26 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 72


>gi|154496223|ref|ZP_02034919.1| hypothetical protein BACCAP_00508 [Bacteroides capillosus ATCC
           29799]
 gi|150274306|gb|EDN01383.1| hypothetical protein BACCAP_00508 [Bacteroides capillosus ATCC
           29799]
          Length = 341

 Score = 41.1 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           ++      + P     ++    +S   ++K ++ L + G V +      G RL    D +
Sbjct: 17  VLALLKQGEGPLSGEAMSRRLGVSRAAVWKAVENLRQEGYVISSA-TNRGYRLEESPDLL 75

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLV 102
           +  ++  A +       C    ++ C   
Sbjct: 76  SAGELSGALDG------CLVGRELLCLRT 98


>gi|331265757|ref|YP_004325387.1| comserved hypothetical protein [Streptococcus oralis Uo5]
 gi|326682429|emb|CBZ00046.1| comserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 308

 Score = 41.1 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|312865698|ref|ZP_07725922.1| HTH domain protein [Streptococcus downei F0415]
 gi|311098819|gb|EFQ57039.1| HTH domain protein [Streptococcus downei F0415]
          Length = 308

 Score = 41.1 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|307702443|ref|ZP_07639399.1| HTH domain protein [Streptococcus oralis ATCC 35037]
 gi|307624025|gb|EFO03006.1| HTH domain protein [Streptococcus oralis ATCC 35037]
          Length = 308

 Score = 41.1 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 9  ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 60


>gi|293364202|ref|ZP_06610928.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291317048|gb|EFE57475.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 320

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 72


>gi|156933539|ref|YP_001437455.1| hypothetical protein ESA_01359 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531793|gb|ABU76619.1| hypothetical protein ESA_01359 [Cronobacter sakazakii ATCC BAA-894]
          Length = 208

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           I     +S+ ++ K++Q L K G +E  RGR
Sbjct: 167 ITSTTNLSKSYVMKVIQELRKGGYIEIQRGR 197


>gi|315611757|ref|ZP_07886679.1| HTH domain protein [Streptococcus sanguinis ATCC 49296]
 gi|315316172|gb|EFU64202.1| HTH domain protein [Streptococcus sanguinis ATCC 49296]
          Length = 320

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +GG  
Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFY 72


>gi|319646607|ref|ZP_08000836.1| hypothetical protein HMPREF1012_01873 [Bacillus sp. BT1B_CT2]
 gi|317391195|gb|EFV71993.1| hypothetical protein HMPREF1012_01873 [Bacillus sp. BT1B_CT2]
          Length = 320

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +         ++AE   +SE  +++ ++ L  AGI V   RG  GG  L
Sbjct: 9  ILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61


>gi|257388774|ref|YP_003178547.1| hypothetical protein Hmuk_2734 [Halomicrobium mukohataei DSM
          12286]
 gi|257171081|gb|ACV48840.1| Protein of unknown function DUF293 [Halomicrobium mukohataei DSM
          12286]
          Length = 177

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          L+     ++   +   IAE    +   +   +Q L    +VE V G +GG +
Sbjct: 17 LVNLYKESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYK 68


>gi|150401330|ref|YP_001325096.1| hypothetical protein Maeo_0903 [Methanococcus aeolicus Nankai-3]
 gi|150014033|gb|ABR56484.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3]
          Length = 148

 Score = 41.1 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              IA+   +    + + ++ L   G++ T +GR GG  L + 
Sbjct: 19 TTKDIAQQLNLHPKNVDRYIRVLRDLGLLTTKKGRSGGAYLTKE 62


>gi|326774896|ref|ZP_08234161.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655229|gb|EGE40075.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus
          XylebKG-1]
          Length = 551

 Score = 41.1 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           +R+L+  A   D    +  +AEA  +    + + +  LVK G+V +
Sbjct: 45 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 91


>gi|116671574|ref|YP_832507.1| ArsR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611683|gb|ABK04407.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24]
          Length = 125

 Score = 41.1 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69
          IR+L   A   D    +S +     +    L + L  L +  +V +VR       RL  P
Sbjct: 26 IRILELLAAAPDTTAPVSFLLAETGLEASHLSQHLATLRRHKVVTSVRSANAVTYRLAHP 85


>gi|52079599|ref|YP_078390.1| DNA-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52784963|ref|YP_090792.1| hypothetical protein BLi01191 [Bacillus licheniformis ATCC 14580]
 gi|52002810|gb|AAU22752.1| hypothetical DNA-binding protein [Bacillus licheniformis ATCC
          14580]
 gi|52347465|gb|AAU40099.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 320

 Score = 41.1 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +         ++AE   +SE  +++ ++ L  AGI V   RG  GG  L
Sbjct: 9  ILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61


>gi|229818707|ref|YP_002880233.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
 gi|229564620|gb|ACQ78471.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
          Length = 318

 Score = 41.1 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLC 67
          + +L Y   H ++    +++     +S   L + +  L + G V ++ RG  GG RL 
Sbjct: 9  LALLGYLQTHREW--SGAELCRRLEVSPRTLRRDVDDLRELGYVIDSSRGIGGGYRLG 64


>gi|254500949|ref|ZP_05113100.1| HTH domain family [Labrenzia alexandrii DFL-11]
 gi|222437020|gb|EEE43699.1| HTH domain family [Labrenzia alexandrii DFL-11]
          Length = 252

 Score = 41.1 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 3  LTKRTDYGIR-VLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L+ +    IR  ++  A+  +       ++A+   +S   + + ++ L    ++ + RG 
Sbjct: 20 LSTQIANAIRKAILDGALSVEERLPSETELADRFGVSRATVREAMKRLAAQNLIRSERGA 79

Query: 61 RGG 63
           GG
Sbjct: 80 SGG 82


>gi|229823098|ref|ZP_04449167.1| hypothetical protein GCWU000282_00393 [Catonella morbi ATCC
          51271]
 gi|229787264|gb|EEP23378.1| hypothetical protein GCWU000282_00393 [Catonella morbi ATCC
          51271]
          Length = 350

 Score = 41.1 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R++   A H +   R   +AE   +SE  L  ++  L   G+V+    ++ G+RL    
Sbjct: 24 LRIMKTLAQHPERIGR-KTLAEEVALSERSLRTLMDSLRSQGLVDV---KQSGIRLTP-- 77

Query: 71 DQITILDVVKATEESFF 87
            I + DV++A E++  
Sbjct: 78 --IGL-DVLEAMEQALD 91


>gi|315427936|dbj|BAJ49527.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum
          subterraneum]
          Length = 263

 Score = 41.1 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          TDY +R   Y A+    P   S+I++   I    ++++L  L + G +ET  GR
Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIETQSGR 74


>gi|134101853|ref|YP_001107514.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133914476|emb|CAM04589.1| GntR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 240

 Score = 41.1 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
             +      ++A    +S + L + ++ L ++G VE+ RGR GG
Sbjct: 37 APGERLPAERELATRLGVSRVTLREAIRALQESGYVESRRGRYGG 81


>gi|21223054|ref|NP_628833.1| DeoR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289769739|ref|ZP_06529117.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|7288069|emb|CAB81864.1| putative deoR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
 gi|289699938|gb|EFD67367.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 339

 Score = 41.1 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          L+      +R++   A+   +     ++AE   ++E  + + +  L + G  V++  G  
Sbjct: 8  LSTSARL-LRLVSLLAVRPAW--TCGELAERMEVTERTVRRDVARLRELGYTVDSDPGPW 64

Query: 62 GGVRL 66
          GG RL
Sbjct: 65 GGYRL 69


>gi|297619903|ref|YP_003708008.1| putative signal transduction protein [Methanococcus voltae A3]
 gi|297378880|gb|ADI37035.1| putative signal transduction protein with CBS domains
          [Methanococcus voltae A3]
          Length = 300

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA+    +   +   +Q L   G+V+ V G +GG 
Sbjct: 14 LILIYKQKNKAVKGTEIAKNLSRNPGTIRNQMQALRALGLVDGVPGPKGGY 64


>gi|118469703|ref|YP_886936.1| GntR family transcriptional regulator [Mycobacterium smegmatis
          str. MC2 155]
 gi|118170990|gb|ABK71886.1| GntR-family protein transcriptional regulator [Mycobacterium
          smegmatis str. MC2 155]
          Length = 244

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +      ++A    +S   + + ++ L  AG + + RGR GG  L 
Sbjct: 46 GESLPPERELATRLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFLA 92


>gi|253576977|ref|ZP_04854300.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843587|gb|EES71612.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 302

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRGG---VR 65
           + +L   A   + P  I ++A A  +S   +   ++ L + G+V T    G+ G      
Sbjct: 22  LHILRLLA---NRPMNIKELAAAVGLSSAIMTMHVRKLSECGLVATHMAPGKSGLQKICS 78

Query: 66  LCRPADQITI-LDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           L     +I        A E   +  E    H  D  +  +CG+
Sbjct: 79  LAVSGAEIQFPAQ--AAAERKSYRVEIPVGHYSDFHIEPTCGI 119


>gi|218665722|ref|YP_002426669.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|218517935|gb|ACK78521.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 238

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 17/82 (20%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIA-----EACCISELFLFKILQPLVK------ 50
            L++R     R L Y A+H D      +IA         I E  +   +  L K      
Sbjct: 154 RLSRRL---FRFLHYLALHPDRTFSSREIANVLTDGRSLIQENSVAAQVHRLRKCLEKAG 210

Query: 51  -AGIVETVRGRRGGVRLCRPAD 71
            A  +ETV G   G RL  P  
Sbjct: 211 AAEWLETVHGF--GYRLSLPPK 230


>gi|82701586|ref|YP_411152.1| ribonuclease BN, putative [Nitrosospira multiformis ATCC 25196]
 gi|123545059|sp|Q2YBW1|Y452_NITMU RecName: Full=UPF0761 membrane protein Nmul_A0452
 gi|82409651|gb|ABB73760.1| tRNA-processing RNAse BN [Nitrosospira multiformis ATCC 25196]
          Length = 426

 Score = 41.1 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 10  GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            +R+L     A+          + +   +S   + +IL+ +VKA  V  V+   GG    
Sbjct: 301 ALRLLGILGEALKAGKVETALSLQQQLMLSPEEVERILELMVKANFVRQVQ--EGGWVQI 358

Query: 68  RPADQITILDVVKAT 82
               +I I DV +  
Sbjct: 359 LDPAEIRIADVYRLF 373


>gi|303243947|ref|ZP_07330286.1| Helix-turn-helix type 11 domain protein [Methanothermococcus
          okinawensis IH1]
 gi|302485599|gb|EFL48524.1| Helix-turn-helix type 11 domain protein [Methanothermococcus
          okinawensis IH1]
          Length = 144

 Score = 41.1 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +    IAE   +    + + ++ L   G+V T +G+ GGV L     
Sbjct: 18 STTKDIAEHLNLHPKNVDRYIRVLRDLGLVITKKGKNGGVFLTEEGR 64


>gi|223940104|ref|ZP_03631967.1| ribonuclease BN [bacterium Ellin514]
 gi|223891206|gb|EEF57704.1| ribonuclease BN [bacterium Ellin514]
          Length = 548

 Score = 41.1 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 10  GIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
            +R++   A        P  + ++A    +    + +I+Q LV + + VE V G+  G  
Sbjct: 408 ALRLIQCVAERFQKGQLPPTVPEMAARLIVPTRMVQQIMQTLVSSHLVVEVVLGKEIGFA 467

Query: 66  LCRPADQITILDVVKAT 82
             RP D +T  D++ A 
Sbjct: 468 AARPLDSMTCHDILLAL 484


>gi|222080140|ref|YP_002540003.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
 gi|221738785|gb|ACM39564.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
          Length = 106

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +L+  A   +    +  ++E   +S+  L + L  L +AG+V T R       +C+ +  
Sbjct: 31 ILIILA---EREVSVGPLSELVGLSQSALSQHLAKLRQAGLVSTRREAHTVYYICKSSAV 87

Query: 73 ITILDVV 79
          + IL ++
Sbjct: 88 LRILAIL 94


>gi|296118135|ref|ZP_06836716.1| transcriptional regulator, ArsR family [Corynebacterium
          ammoniagenes DSM 20306]
 gi|295968693|gb|EFG81937.1| transcriptional regulator, ArsR family [Corynebacterium
          ammoniagenes DSM 20306]
          Length = 115

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGR 60
          +++L   A     P  ++ I E+  +S+  +   L+ L +AG++E + +GR
Sbjct: 44 LQILSQLATKGCGPATVNDITESVGLSQPTVSHHLRKLTEAGLLERSQQGR 94


>gi|20094461|ref|NP_614308.1| transcription regulator [Methanopyrus kandleri AV19]
 gi|19887554|gb|AAM02238.1| Predicted transcriptional regulator of amino acid metabolism
          consisting of an ACT domain and a DNA-binding HTH
          domain [Methanopyrus kandleri AV19]
          Length = 171

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          R ++   ++N     +S+I+    +    L + ++ L   G+VET  GR GGV   + A
Sbjct: 20 RDILELVVNNSG-ITVSEISRRLGLHRSTLDRYVKILKDLGLVETKPGRGGGVYPTKDA 77


>gi|226349496|ref|YP_002776610.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
           B4]
 gi|226245411|dbj|BAH55758.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 109

 Score = 41.1 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%)

Query: 3   LTKRTDYGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           L++   Y +      R+L+       YP   S++A+   +S   L   L  L   G+V  
Sbjct: 10  LSRFG-YALSDATRTRILLSLKGQPGYP---SELADQIGVSRQILSNHLACLRGCGLVVA 65

Query: 57  V-RGRRGGVRLCRPADQI-----TILDVVKATEESFFVAECFASHKIDC 99
           V  GRR    L  P  +I      +LD+V A + +     C  +    C
Sbjct: 66  VPEGRRTRYELADP--RIGHALGDLLDLVLAVDPAL----CPDADDSGC 108


>gi|253573285|ref|ZP_04850628.1| DeoR-family protein transcriptional regulator [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251846813|gb|EES74818.1| DeoR-family protein transcriptional regulator [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 325

 Score = 41.1 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 20/100 (20%)

Query: 1  MHLT-------KRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          M LT       KR D   R++ +  A+    P     +A+   +S+  + + +Q L + G
Sbjct: 1  MMLTGGEPNAMKRMD---RMMAIVMALQQ-RPETAQSLADKLEVSKRTVLRDMQALAEIG 56

Query: 53 I-VETVRGRRGGVRLCR----PADQITILD---VVKATEE 84
          I +  + G  GG RL      P  Q+   +   V+ A + 
Sbjct: 57 IPLVALPGPGGGYRLMDGFRLPPLQLDAGEALTVLLALDG 96


>gi|242309657|ref|ZP_04808812.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523658|gb|EEQ63524.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 199

 Score = 41.1 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
                 QIA+    S   L +IL+ L  AG ++T +G+
Sbjct: 158 QKLTQRQIAQKLNTSPESLSRILKELKNAGFIKTQKGK 195


>gi|297560956|ref|YP_003679930.1| hypothetical protein Ndas_1998 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296845404|gb|ADH67424.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 334

 Score = 41.1 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  + R    +  L+   +          +A+   +S   + + +  L + G  + T +G
Sbjct: 3  MKTSAR----LLALLSI-LQTRRDWSGQDLADRLDVSARTVRRDVDRLRELGYPITTFKG 57

Query: 60 RRGGVRL 66
            GG RL
Sbjct: 58 PDGGYRL 64


>gi|120401622|ref|YP_951451.1| GntR domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119954440|gb|ABM11445.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 245

 Score = 41.1 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
             D      +++E   +S   +   +  L + G++   RGR GG  +  P   
Sbjct: 35 RPGDRLPTERELSEMLDVSRTTVRTAVAVLERDGLIAVRRGRGGGFTVQAPPVD 88


>gi|331698669|ref|YP_004334908.1| GntR domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326953358|gb|AEA27055.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 255

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 11 IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +R L++       D       +AE   I+ L L + L+ L   G VE  RG RGG
Sbjct: 21 LRRLIHLGEVGPGDRLPAERDLAEQLGIARLSLREALKTLQNDGYVEVRRGARGG 75


>gi|260904320|ref|ZP_05912642.1| DeoR family transcriptional regulator [Brevibacterium linens BL2]
          Length = 318

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            + +AE   +S   +   +  L   G  VE  RG  GG RL 
Sbjct: 7  SGTDLAERLNVSSRTVRNDIGTLRDLGYPVEGTRGGEGGYRLG 49


>gi|256785847|ref|ZP_05524278.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 333

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          L+      +R++   A+   +     ++AE   ++E  + + +  L + G  V++  G  
Sbjct: 2  LSTSARL-LRLVSLLAVRPAW--TCGELAERMEVTERTVRRDVARLRELGYTVDSDPGPW 58

Query: 62 GGVRL 66
          GG RL
Sbjct: 59 GGYRL 63


>gi|227513905|ref|ZP_03943954.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
 gi|227087712|gb|EEI23024.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
          Length = 105

 Score = 41.1 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 45  LQPLVKAGIVETVRGRRGGV-RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
           +  L  A I+   +  R       R  DQIT+LDV +AT                C +  
Sbjct: 2   IAQLRAADILAARQNNR--YDNFARDLDQITVLDVYRATAPKNPFLVPDQETSGQCSVGV 59

Query: 104 SCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
           +    +T    +        L Q +++ LV  
Sbjct: 60  AFPEVITKHFAEVQVGIEQRLDQITVQQLVDE 91


>gi|302538209|ref|ZP_07290551.1| DeoR family transcriptional regulator [Streptomyces sp. C]
 gi|302447104|gb|EFL18920.1| DeoR family transcriptional regulator [Streptomyces sp. C]
          Length = 325

 Score = 40.7 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +R+L       ++P     +A+   ++   + + +  L + G  V++ RG  GG RL 
Sbjct: 20 LRLLSLLQTRREWPGT--DLADRLEVTVRTVRRDIDRLRQLGYPVDSTRGHAGGYRLG 75


>gi|239988466|ref|ZP_04709130.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
          Length = 360

 Score = 40.7 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 32 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSIGGYRLVAGAAMPP 78


>gi|86157125|ref|YP_463910.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773636|gb|ABC80473.1| tRNA-processing RNAse BN [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 429

 Score = 40.7 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 12  RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           R L+  A   D          +A     +     + L  L   GIV ++    GG+   R
Sbjct: 290 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAVLRLRGIVVSL--ADGGLVPAR 347

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
           P ++IT+LDV +A                         L+ +L          L   +  
Sbjct: 348 PLEKITLLDVRRAVSGREA------------RPDERGILSEILMDLEAKAAGQLDAVTFR 395

Query: 129 CLVRNRSS 136
            L     +
Sbjct: 396 ELCDRERA 403


>gi|88800150|ref|ZP_01115719.1| putative transcriptional regulator [Reinekea sp. MED297]
 gi|88777131|gb|EAR08337.1| putative transcriptional regulator [Reinekea sp. MED297]
          Length = 244

 Score = 40.7 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++     + + E   +S+  L + L  L   G  +++ RGR GG+RL 
Sbjct: 22 SEGYWTTADLREQLEVSQRTLMRELAELKSMGYPIDSDRGRGGGIRLN 69


>gi|239942001|ref|ZP_04693938.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291445450|ref|ZP_06584840.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291348397|gb|EFE75301.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 353

 Score = 40.7 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 25 ELAERLDVSPRTIRRDIDRLRDLGYPVEASRGSIGGYRLVAGAAMPP 71


>gi|297160986|gb|ADI10698.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 329

 Score = 40.7 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +       ++ +A+   + E  + + +  L+   + V +VRGR GG RL 
Sbjct: 8  VLALLEI-LQTGGTRTVADLADRLGVDERTVRRYIDHLIDLDVPVRSVRGRYGGYRLA 64


>gi|290579960|ref|YP_003484352.1| hypothetical protein SmuNN2025_0434 [Streptococcus mutans NN2025]
 gi|254996859|dbj|BAH87460.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 307

 Score = 40.7 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 12 RVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R+L   ++ +D       ++AE   +S+  +++ L+ L +AGI + +  GR GG  L + 
Sbjct: 5  RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSLMKN 64


>gi|229492641|ref|ZP_04386444.1| transcriptional regulator, GntR family [Rhodococcus erythropolis
           SK121]
 gi|229320627|gb|EEN86445.1| transcriptional regulator, GntR family [Rhodococcus erythropolis
           SK121]
 gi|309949444|dbj|BAJ23154.1| GntR family transcriptional regulator [Rhodococcus erythropolis]
          Length = 307

 Score = 40.7 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
                   ++AE   +S   L ++L  L +AG+V    GR GG
Sbjct: 75  GSRLGSERELAEHYGVSRSSLRQVLAALEEAGVVRRAIGRSGG 117


>gi|292669455|ref|ZP_06602881.1| two component system response regulator [Selenomonas noxia ATCC
           43541]
 gi|292648908|gb|EFF66880.1| two component system response regulator [Selenomonas noxia ATCC
           43541]
          Length = 255

 Score = 40.7 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y +R + +   H   P    ++AEA  +S  +L K+   
Sbjct: 153 YLLRAMRHMEEHMAEPITAREVAEALGLSVSYLHKLFAR 191


>gi|84687655|ref|ZP_01015529.1| transcriptional regulator, putative pyruvate dehydrogenase complex
           repressor [Maritimibacter alkaliphilus HTCC2654]
 gi|84664332|gb|EAQ10822.1| transcriptional regulator, putative pyruvate dehydrogenase complex
           repressor [Rhodobacterales bacterium HTCC2654]
          Length = 264

 Score = 40.7 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            D      ++A+   +S   + + L+ L  AG+V T +G  GG
Sbjct: 62  GDKLPPERELAKQLDVSRNVVREALRILENAGLVVTRKGAYGG 104


>gi|307352870|ref|YP_003893921.1| putative signal transduction protein with CBS domains
          [Methanoplanus petrolearius DSM 11571]
 gi|307156103|gb|ADN35483.1| putative signal transduction protein with CBS domains
          [Methanoplanus petrolearius DSM 11571]
          Length = 292

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  L+          +  +IAE    +   +   +Q L   G+VE V G +GG      A
Sbjct: 11 LITLITLYHRKSVAIKGEEIAELLKRNPGTVRNQMQALKALGLVEGVPGPKGGYTPSSSA 70

Query: 71 -DQITILD 77
           +++ +LD
Sbjct: 71 YNELNLLD 78


>gi|87122807|ref|ZP_01078679.1| probable deoR-family transcriptional regulator [Marinomonas sp.
          MED121]
 gi|86161913|gb|EAQ63206.1| probable deoR-family transcriptional regulator [Marinomonas sp.
          MED121]
          Length = 243

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          I +     ++ IAE   +S   + + +Q L   G+ ++  RGR GGVRL
Sbjct: 20 IKSGDAMTVALIAEEFNVSPRTISRDIQILRDQGLPIDADRGRGGGVRL 68


>gi|302867546|ref|YP_003836183.1| DeoR family transcriptional regulator [Micromonospora aurantiaca
          ATCC 27029]
 gi|315506054|ref|YP_004084941.1| deor family transcriptional regulator [Micromonospora sp. L5]
 gi|302570405|gb|ADL46607.1| DeoR family transcriptional regulator [Micromonospora aurantiaca
          ATCC 27029]
 gi|315412673|gb|ADU10790.1| DeoR family transcriptional regulator [Micromonospora sp. L5]
          Length = 334

 Score = 40.7 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
             D+P  +  +AE   +S   + + +  L + G  +E+ +G  GG RL 
Sbjct: 20 ARRDWPGSL--LAERLRVSPRTVRRDVDRLRELGYPIESAKGPDGGYRLG 67


>gi|323341594|ref|ZP_08081827.1| HTH domain protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464019|gb|EFY09212.1| HTH domain protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 308

 Score = 40.7 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60
           L+      + +L   +  +     +S++A+   ISE  + ++   L   G  + TV G 
Sbjct: 3  KLSN----ALVMLDVLSARS--VVPLSELADLLEISERGVQRLKGELESVGYEITTVMGP 56

Query: 61 RGGVRL 66
           GG  L
Sbjct: 57 GGGYVL 62


>gi|163841865|ref|YP_001626270.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
 gi|162955341|gb|ABY24856.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
          Length = 313

 Score = 40.7 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           +AE   +S   L + ++ L + G  VE  RG  GG +L 
Sbjct: 15 DLAEKLEVSLRTLRRDVERLRELGYPVEARRGTDGGYQLA 54


>gi|332299135|ref|YP_004441057.1| biotin/acetyl-CoA-carboxylase ligase [Treponema brennaborense DSM
          12168]
 gi|332182238|gb|AEE17926.1| biotin/acetyl-CoA-carboxylase ligase [Treponema brennaborense DSM
          12168]
          Length = 390

 Score = 40.7 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L      +        +AE C +S   ++K +  L   G V    G   G RL R  +
Sbjct: 6  RILSILREADGAVVSGEDLAERCGVSRTAVWKAVSALRSDGYVL-EAGTNRGYRLVREGE 64


>gi|283476992|emb|CAY72884.1| putative negative regulator [Erwinia pyrifoliae DSM 12163]
 gi|310765326|gb|ADP10276.1| putative negative regulator [Erwinia sp. Ejp617]
          Length = 83

 Score = 40.7 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 99  CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
           C +  +C   +     +  F   L +Y++   V +   +  I 
Sbjct: 32  CHITPACRRKTARHDRVQRFLHELDRYTLAERVEDNHPLYPIL 74


>gi|296108946|ref|YP_003615895.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus infernus ME]
 gi|295433760|gb|ADG12931.1| putative signal transduction protein with CBS domains
          [Methanocaldococcus infernus ME]
          Length = 293

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      + P + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LINLYREKNRPIKGTEIALRLKRNPGTIRNQMQALRALDLVDGVPGPKGGY 64


>gi|219850739|ref|YP_002465171.1| signal transduction protein with CBS domains [Methanosphaerula
          palustris E1-9c]
 gi|219544998|gb|ACL15448.1| putative signal transduction protein with CBS domains
          [Methanosphaerula palustris E1-9c]
          Length = 292

 Score = 40.7 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69
          +  L+     + +P +  +IAE    +   +   +Q L    +V+ V G +GG     R 
Sbjct: 11 LITLITLYHQHSHPIKGEEIAEVIKRNPGTIRNQMQALKALELVDGVPGPKGGYNPTARA 70

Query: 70 ADQ--ITILD 77
            +  I++ D
Sbjct: 71 YKELSISVAD 80


>gi|325969941|ref|YP_004246132.1| GntR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025179|gb|ADY11938.1| transcriptional regulator, GntR family [Spirochaeta sp. Buddy]
          Length = 225

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 5  KRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            ++Y +RVL    +   +        ++IA    IS   + + L  L + GIVE
Sbjct: 11 TASEYALRVLKENIISLDLAPGSMVSENEIAAQLGISRTPVREALIELSRVGIVE 65


>gi|256372101|ref|YP_003109925.1| GntR family transcriptional regulator [Acidimicrobium
          ferrooxidans DSM 10331]
 gi|256008685|gb|ACU54252.1| GntR domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 264

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          R+L   A+      D      ++     +S   L + +  L   G++ET RGR GG
Sbjct: 37 RILAAIAVGILYPGDRLPPERELTSRLGVSRATLREAIGRLAAFGVLETRRGRGGG 92


>gi|114319682|ref|YP_741365.1| putative ribonuclease BN [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312407|sp|Q0ABB2|Y521_ALHEH RecName: Full=UPF0761 membrane protein Mlg_0521
 gi|114226076|gb|ABI55875.1| tRNA-processing RNAse BN [Alkalilimnicola ehrlichii MLHE-1]
          Length = 445

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 10/137 (7%)

Query: 7   TDYGIRVLMYC--AIHNDYPNRISQIAEACCISELF-LFKILQPLVKAGIVETVRGRRGG 63
               +RVL +   A           ++     +    + ++L+PL +A  ++ + G  G 
Sbjct: 305 FRLAVRVLGHLWRAQREGRGLSTRALSRLEPAAGEMGVLQVLRPLRRARAIQ-LNG-EGE 362

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
             L R     T+LD+ ++                D        L   L +A       L 
Sbjct: 363 WMLARDPSHYTLLDLYRSEAFPLPSVAALRKDGDDWDQ----RLADSLAQADTGLASGLA 418

Query: 124 QYSIECLVRNRSSIKKI 140
           + S++ +  +R  I+ +
Sbjct: 419 E-SLDDIFTSRPQIRPV 434


>gi|325958233|ref|YP_004289699.1| phosphate uptake regulator PhoU [Methanobacterium sp. AL-21]
 gi|325329665|gb|ADZ08727.1| phosphate uptake regulator, PhoU [Methanobacterium sp. AL-21]
          Length = 299

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          KR+D  ++ ++   +H D P    +IAE   ++  ++ K+LQP+VK G+V 
Sbjct: 2  KRSDSTLKAILDVILH-DNPATQDEIAEKLGLTRRYVTKLLQPMVKRGVVR 51


>gi|134103756|ref|YP_001109417.1| DeoR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133916379|emb|CAM06492.1| DeoR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 321

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L   G  VE   G  GG RL      P 
Sbjct: 31 SELAERLGVSPRTIRRDVDRLRDLGYPVEATMGAAGGYRLVAGSAMPP 78


>gi|118472327|ref|YP_890339.1| IclR-family protein transcriptional regulator [Mycobacterium
          smegmatis str. MC2 155]
 gi|118173614|gb|ABK74510.1| IclR-family protein transcriptional regulator [Mycobacterium
          smegmatis str. MC2 155]
          Length = 266

 Score = 40.7 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 5  KRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++    +R    L Y A   D P RI +I  A  +       +L+ LV  G V +
Sbjct: 10 RKVKSAVRTVELLEYLAARPDRPTRIREICAALDMPRSSAHALLRTLVAQGWVRS 64


>gi|311744614|ref|ZP_07718413.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312097|gb|EFQ82015.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
           15272]
          Length = 120

 Score = 40.7 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR------RGG 63
           + VL +     D P  +S++ E        + + L  L  AG+V+  R GR      RGG
Sbjct: 40  LHVLWHL---TDGPATVSELVERTGAPRTGVSQHLAKLRHAGLVDVTRSGRFQHYALRGG 96

Query: 64  V--RLCRP 69
              RL R 
Sbjct: 97  HVARLVRE 104


>gi|238619789|ref|YP_002914615.1| transcriptional regulator, TrmB [Sulfolobus islandicus M.16.4]
 gi|238380859|gb|ACR41947.1| transcriptional regulator, TrmB [Sulfolobus islandicus M.16.4]
          Length = 662

 Score = 40.7 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQI-- 73
           A+ +D   + S++A+   +S+ +   +L+ L + G+VE  +  G+     L     QI  
Sbjct: 495 ALPDDKGLKSSEVADKLRVSKQYAINVLKNLERKGLVEADKEDGKTFAWYLTPLGRQIKD 554

Query: 74  ---TILDVVKA 81
               + DV++ 
Sbjct: 555 LVNNVGDVIEV 565


>gi|291007718|ref|ZP_06565691.1| DeoR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 318

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L   G  VE   G  GG RL      P 
Sbjct: 28 SELAERLGVSPRTIRRDVDRLRDLGYPVEATMGAAGGYRLVAGSAMPP 75


>gi|118473134|ref|YP_888256.1| TonB-dependent receptor [Mycobacterium smegmatis str. MC2 155]
 gi|118174421|gb|ABK75317.1| TonB-dependent receptor [Mycobacterium smegmatis str. MC2 155]
          Length = 224

 Score = 40.7 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68
           L+     +  P   ++IAE   +S+  + + +Q L  AG+ +    G  GG  + R   
Sbjct: 3  ALVDLLRGSRKPLSAARIAEEFGVSKRTIERDIQSLQLAGVPIYADHGVSGGYSILREHS 62

Query: 69 -PADQITI 75
           P   +T+
Sbjct: 63 LPPLNLTV 70


>gi|312198510|ref|YP_004018571.1| GntR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229846|gb|ADP82701.1| transcriptional regulator, GntR family [Frankia sp. EuI1c]
          Length = 267

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
             +       +A +  +S   L + L  L + G+V  VRGR GG
Sbjct: 46 RPGERLGGERDLAASLGVSRETLRQALTSLEREGVVLRVRGRGGG 90


>gi|320009536|gb|ADW04386.1| regulatory protein DeoR [Streptomyces flavogriseus ATCC 33331]
          Length = 331

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +  +     ++++A+   +    + + ++ L+   + VE+VRGR GG RL 
Sbjct: 7  RVLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVEQLIDLDVPVESVRGRYGGYRLG 64


>gi|297193862|ref|ZP_06911260.1| DeoR-family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197720223|gb|EDY64131.1| DeoR-family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 326

 Score = 40.7 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L   G  VE  +G  GG RL      P 
Sbjct: 31 SELAERLDVSPRTIRRDIDRLRDLGYPVEATKGAVGGYRLVAGAAMPP 78


>gi|266623352|ref|ZP_06116287.1| putative pectin degradation repressor protein KdgR [Clostridium
          hathewayi DSM 13479]
 gi|288864862|gb|EFC97160.1| putative pectin degradation repressor protein KdgR [Clostridium
          hathewayi DSM 13479]
          Length = 255

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +++++  A    +   +S IAEA  +S   + +ILQ L   G V
Sbjct: 15 ALQIILALAEQKGW-VNLSDIAEATGLSPSTVHRILQELQACGFV 58


>gi|297561944|ref|YP_003680918.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296846392|gb|ADH68412.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 253

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L + A     P   S IA    +    ++++L+ + + G V 
Sbjct: 10 ALRLLRFLATRPG-PVSASAIAAELGVPRSSVYQLLEAMAREGFVT 54


>gi|262202595|ref|YP_003273803.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262085942|gb|ACY21910.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247]
          Length = 120

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +R+L   A H      +  I+    +S+  +   L+ L +AG+V + R  
Sbjct: 35 LRLLSEVAAHPGGEACVCDISGPFELSQPTISHHLKVLRQAGLVTSERRA 84


>gi|254380959|ref|ZP_04996325.1| helix-turn-helix type 11 domain containing protein [Streptomyces
          sp. Mg1]
 gi|194339870|gb|EDX20836.1| helix-turn-helix type 11 domain containing protein [Streptomyces
          sp. Mg1]
          Length = 335

 Score = 40.7 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          L+   + +     ++++A    + E  + +    L+   + VE+VRGR GG RL 
Sbjct: 4  LLEL-LQSGGLRTVAELAARLEVDERTVRRYADHLLDLDVPVESVRGRHGGYRLA 57


>gi|318062292|ref|ZP_07981013.1| transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 244

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPAD 71
               +      ++A    +S   L +++  L   G+V+  RGR GG       R   
Sbjct: 41 LVAPGERLPPERELAARLGVSRATLREVVSVLHTEGLVDFRRGRYGGTFVRAGARAPR 98


>gi|284043766|ref|YP_003394106.1| GntR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947987|gb|ADB50731.1| GntR domain protein [Conexibacter woesei DSM 14684]
          Length = 247

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 37/124 (29%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--- 73
                D   R   +AE   +S   + +    L +A IV+  RG+ GG +L      I   
Sbjct: 39  LYAPGDMLPRERDLAERLGVSRTVVREAYAVLRRAAIVDVRRGQSGGTQLV-SLTNIPSV 97

Query: 74  -------------TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
                        ++L+V +A E +  +                     V R+A  AFF 
Sbjct: 98  LASVVGETRYELRSVLEVRRAVEPAAALI--------------------VARRADEAFFA 137

Query: 121 VLTQ 124
            L  
Sbjct: 138 RLDG 141


>gi|84495411|ref|ZP_00994530.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84384904|gb|EAQ00784.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
          Length = 322

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++A    +S+  L + ++ L + G  V + RG  GG +L 
Sbjct: 25 ELASRLDVSDRTLRRDVERLRELGYPVTSSRGVEGGYQLG 64


>gi|170747859|ref|YP_001754119.1| Crp/FNR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654381|gb|ACB23436.1| transcriptional regulator, Crp/Fnr family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 259

 Score = 40.7 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 17  CAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVR 58
             +  +Y   +  S++A+   +S + L ++L  L +AG++E+ R
Sbjct: 166 LGLEPEYRLPLAQSELADTAGLSNVHLSRVLSDLRRAGLIESGR 209


>gi|325673267|ref|ZP_08152959.1| ArsR family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|325555857|gb|EGD25527.1| ArsR family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 128

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H    + +  I+ A  +S+  +   L+ L +AG++++ R
Sbjct: 40 LRMLSLIAAHEGGESCVCDISPAFDLSQPTISHHLKVLREAGLLDSER 87


>gi|28631602|gb|AAO49781.1| Sep repressor SepR [Pseudomonas putida]
          Length = 260

 Score = 40.7 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H      ++ IA+   +    + +I+  L    +VE + G  GG RL 
Sbjct: 23 IMRALGSHPQG-LSLAAIAQVVDLPRSTVQRIINALGAEHLVEAL-GPSGGFRLG 75


>gi|294054988|ref|YP_003548646.1| hypothetical protein Caka_1457 [Coraliomargarita akajimensis DSM
          45221]
 gi|293614321|gb|ADE54476.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
          45221]
          Length = 94

 Score = 40.7 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GR------RGGV 64
           VL+  A + + P  + ++A A  I+E  + +I+  L  AG +   R GR       G +
Sbjct: 15 HVLICLARNPEQP--LREVALAVGITERAVQRIVAELEVAGYLSHERIGRQNSYRIHGAL 72

Query: 65 RLCRPADQ-ITILDVVKAT 82
           L  P +   TI D++   
Sbjct: 73 ELRHPLEAHRTIGDLLDVV 91


>gi|257051948|ref|YP_003129781.1| putative transcriptional regulator [Halorhabdus utahensis DSM
           12940]
 gi|256690711|gb|ACV11048.1| putative transcriptional regulator [Halorhabdus utahensis DSM
           12940]
          Length = 205

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
           +   H   P     +A+    +     K L+ L + G VET  G  GG    R  + + +
Sbjct: 42  HVVAHAYSPVSADAVADDALTTPKTARKHLETLAEEGFVETSPGEHGGTLYRRSPESLVV 101

Query: 76  ---LDVVKATEESFFVAE 90
               D+++       V  
Sbjct: 102 EQAADILEHVTTDELVTR 119


>gi|229823766|ref|ZP_04449835.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC
          51271]
 gi|229786805|gb|EEP22919.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC
          51271]
          Length = 160

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          RV+ Y   H + P  + ++AE   IS+    ++ + + K  +++
Sbjct: 46 RVVTYLFHHQERPVTMMEVAEKMKISKPVASQLFKRMEKNQLID 89


>gi|297160199|gb|ADI09911.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 314

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          S++A+   +S   + + +  L + G  VE   G  GG RL 
Sbjct: 17 SELADRLGVSPRTVRRDVDRLRELGYPVEASMGAAGGYRLA 57


>gi|291300515|ref|YP_003511793.1| helix-turn-helix type 11 domain-containing protein
          [Stackebrandtia nassauensis DSM 44728]
 gi|290569735|gb|ADD42700.1| Helix-turn-helix type 11 domain protein [Stackebrandtia
          nassauensis DSM 44728]
          Length = 327

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + N       Q++    +S   + +    L +AGI V   +GR GG RL
Sbjct: 9  MVLLLQNRGSLTADQLSAELGVSPRTIARDATELAEAGIPVYAEQGRGGGYRL 61


>gi|32492525|gb|AAP85343.1| transcription repressor [Streptomyces griseoruber]
          Length = 348

 Score = 40.3 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +++AE   +S   + + +  L   G  ++++ G  GG +L 
Sbjct: 24 AELAERLSVSPRTVRRDVDKLRALGYPIQSIGGVGGGYQLA 64


>gi|312137937|ref|YP_004005273.1| arsr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311887276|emb|CBH46587.1| putative ArsR family transcriptional regulator [Rhodococcus equi
          103S]
          Length = 128

 Score = 40.3 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H    + +  I+ A  +S+  +   L+ L +AG++++ R
Sbjct: 40 LRMLSLIAAHEGGESCVCDISPAFDLSQPTISHHLKVLREAGLLDSER 87


>gi|319951528|ref|ZP_08025333.1| Helix-turn-helix type 11 domain protein [Dietzia cinnamea P4]
 gi|319434825|gb|EFV90140.1| Helix-turn-helix type 11 domain protein [Dietzia cinnamea P4]
          Length = 302

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLC- 67
          RVL+  A   D   ++ QIA+   I+E    +I+  L +AG +E  R R G     RL  
Sbjct: 12 RVLLCIAR--DDQMQLPQIADEVGITERATRRIITELERAGYLE--RSRDGLTDRYRLNG 67

Query: 68 ------RPADQITILDVVKATEES 85
                R    + + +V+   E  
Sbjct: 68 KLPLRPRTDRDVAVGEVLDLLEHP 91


>gi|328882023|emb|CCA55262.1| putative transcriptional regulator [Streptomyces venezuelae ATCC
          10712]
          Length = 334

 Score = 40.3 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          RVL    +          ++AE   ++   + + ++ L   G  V    G  GG RL R
Sbjct: 9  RVLTLLGLLQRRQVWTGPELAERLGVTARTVRRDVERLRALGYPVHAGMGVGGGYRLGR 67


>gi|218295838|ref|ZP_03496618.1| putative transcriptional regulator [Thermus aquaticus Y51MC23]
 gi|218243576|gb|EED10104.1| putative transcriptional regulator [Thermus aquaticus Y51MC23]
          Length = 449

 Score = 40.3 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 14  LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           L+  A +       ++++A+A  + E    ++L  + + G+V   R   GG RL R
Sbjct: 337 LIALAHLKRVGEAGLAELAKALQLPEEAARRVLSRMERMGLV---RREGGGYRLAR 389


>gi|169628050|ref|YP_001701699.1| GntR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169240017|emb|CAM61045.1| Putative transcriptional regulator, GntR family [Mycobacterium
          abscessus]
          Length = 273

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          R+L   A              ++AE   +S   +   L PL +AGI+E   GR GG
Sbjct: 16 RILSMLAQGTLHPGSRLGSEREMAERFAVSRATVRSALVPLSRAGILERQTGRGGG 71


>gi|332652740|ref|ZP_08418485.1| two-component response regulator [Ruminococcaceae bacterium D16]
 gi|332517886|gb|EGJ47489.1| two-component response regulator [Ruminococcaceae bacterium D16]
          Length = 246

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 6   RTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQP 47
           ++ Y ++ + Y   H D P   +++IA++  ISE  L    + 
Sbjct: 140 KSKYVLQAMSYIGEHYDNPNITVAEIAQSIGISEGHLSHTFKK 182


>gi|158423617|ref|YP_001524909.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330506|dbj|BAF87991.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 317

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           RVL+   +         ++AE   +S   + K+L  L    ++E V+  RG   L    +
Sbjct: 90  RVLLAGRLPGGTKLGEHRLAEIFDVSRERIRKVLHRLGHERLIEVVK-NRGAFTLAPDPN 148

Query: 72  QITI-LDVVKATEESF 86
           +I +  +  +  E   
Sbjct: 149 EIRVIFEARRILEGGI 164


>gi|55377645|ref|YP_135495.1| hypothetical protein rrnAC0802 [Haloarcula marismortui ATCC
          43049]
 gi|55230370|gb|AAV45789.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 176

 Score = 40.3 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
                     IAE    +   +   +Q L   G+VE + G  GG +
Sbjct: 22 QQTGEAVTGETIAEEIDRNPGTVRNQMQSLTSLGLVEGIPGPTGGYK 68


>gi|148548079|ref|YP_001268181.1| regulatory protein IclR [Pseudomonas putida F1]
 gi|148512137|gb|ABQ78997.1| regulatory protein, IclR [Pseudomonas putida F1]
 gi|298682350|gb|ADI95411.1| TtgT [Pseudomonas putida]
          Length = 260

 Score = 40.3 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H      ++ IA+   +    + +I+  L    +VE + G  GG RL 
Sbjct: 23 IMRALGSHPQG-LSLAAIAQVVDLPRSTVQRIINALGAEHLVEAL-GPSGGFRLG 75


>gi|304386037|ref|ZP_07368378.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
 gi|304327960|gb|EFL95185.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
          Length = 300

 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D P  + ++AEA  +S   + K L  L +A I+ + R
Sbjct: 33 SDQPMSVQELAEALNLSSPIVTKHLNKLAEAEIIHSKR 70


>gi|270291503|ref|ZP_06197724.1| transcriptional regulator [Pediococcus acidilactici 7_4]
 gi|270280000|gb|EFA25837.1| transcriptional regulator [Pediococcus acidilactici 7_4]
          Length = 296

 Score = 40.3 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D P  + ++AEA  +S   + K L  L +A I+ + R
Sbjct: 29 SDQPMSVQELAEALNLSSPIVTKHLNKLAEAEIIHSKR 66


>gi|329937711|ref|ZP_08287230.1| DeoR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329303110|gb|EGG46998.1| DeoR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 329

 Score = 40.3 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++AE   ++   + + +  L + G  V TV+G  GG RL 
Sbjct: 28 ELAERLAVTPRTVRRDIGRLRELGYPVTTVKGPAGGYRLG 67


>gi|289767053|ref|ZP_06526431.1| DeoR family transcriptional regulator [Streptomyces lividans TK24]
 gi|289697252|gb|EFD64681.1| DeoR family transcriptional regulator [Streptomyces lividans TK24]
          Length = 354

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +AE   +S   L + +  L + G  V  V+G  GG RL
Sbjct: 78  LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 115


>gi|170741769|ref|YP_001770424.1| GntR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196043|gb|ACA17990.1| transcriptional regulator, GntR family [Methylobacterium sp. 4-46]
          Length = 246

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69
           R ++  A+          I  +  +S   +   L  L   G+VE  R R  G R+ RP  
Sbjct: 36  RAIIEQALKPGEKLPEDAIGASFGVSRTIVRNALHQLAAEGLVEMRRNR--GARVARPRW 93

Query: 70  --ADQITILDVVKATE 83
             A  I   D+ +A E
Sbjct: 94  EEAGDI--FDIRRALE 107


>gi|56459159|ref|YP_154440.1| DeoR family transcriptional regulator [Idiomarina loihiensis
          L2TR]
 gi|56178169|gb|AAV80891.1| Transcriptional regulator, DeoR family [Idiomarina loihiensis
          L2TR]
          Length = 314

 Score = 40.3 bits (94), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      ++IAE   + +  + + +  L + GI V T  G  GG  L
Sbjct: 8  VLALLEL-LQSHKRLSGTEIAEMLGVDKRTVRRYISALEELGIPVTTEHGPHGGYML 63


>gi|228950351|ref|ZP_04112518.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809309|gb|EEM55763.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 301

 Score = 40.3 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           K +   I  ++Y   H      +S++A    ++   L ++ Q
Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSEVANHLAVNRSHLSRVFQ 210


>gi|302390913|ref|YP_003826733.1| biotin/acetyl-CoA-carboxylase ligase [Acetohalobium arabaticum
          DSM 5501]
 gi|302202990|gb|ADL11668.1| biotin/acetyl-CoA-carboxylase ligase [Acetohalobium arabaticum
          DSM 5501]
          Length = 331

 Score = 40.3 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRP 69
          RVL     + D      ++++   +S   ++K +Q L + G V   + R    G  L + 
Sbjct: 10 RVLRILHKNRDQYISGQELSDRLEVSRTAVWKYIQSLREQGYVIDSSSRL---GYCLVKA 66

Query: 70 AD 71
           D
Sbjct: 67 PD 68


>gi|281354975|ref|ZP_06241469.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC
          BAA-548]
 gi|281317855|gb|EFB01875.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC
          BAA-548]
          Length = 208

 Score = 40.3 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP- 69
          +R ++  ++         Q+AE   IS   + + L+ L + G+VETV   R G R+CRP 
Sbjct: 17 VRAVIDGSLAAGERLAEEQLAERFGISRTPVREALRRLNEEGLVETV--PRCGFRVCRPE 74

Query: 70 ADQI 73
            +I
Sbjct: 75 PAEI 78


>gi|320008004|gb|ADW02854.1| transcriptional regulator, IclR family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 279

 Score = 40.3 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           L+   A   D P R+ ++AE   +    ++++L+ LV  G V T
Sbjct: 35 ALLELLASRGDRPARLDELAEELGVPRSSMYQLLRTLVDCGWVRT 79


>gi|153003611|ref|YP_001377936.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5]
 gi|152027184|gb|ABS24952.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5]
          Length = 434

 Score = 40.3 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 13  VLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            ++  A      + P     +A     S     ++L  L  AG+V ++    GG+   RP
Sbjct: 298 AMLQIARAFDRGEPPPDAGDVASRLGSSAEEAGEVLAALRNAGLVVSL--TDGGLVPSRP 355

Query: 70  ADQITILDVVKAT 82
             ++T+LDV +A 
Sbjct: 356 LARLTLLDVRRAL 368


>gi|319950736|ref|ZP_08024631.1| helix-turn-helix, type 11 domain-containing protein [Dietzia
          cinnamea P4]
 gi|319435590|gb|EFV90815.1| helix-turn-helix, type 11 domain-containing protein [Dietzia
          cinnamea P4]
          Length = 332

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L+   +         ++A    ++   + + +  L   G  VE+ RG  GG RL 
Sbjct: 12 VLCLLDL-LQRRSVWTGEELAAELGVTTRSVRRDVDRLRDLGYPVESERGAGGGYRLG 68


>gi|315630414|ref|YP_004090301.1| hypothetical protein Rumal_3992 [Ruminococcus albus 7]
 gi|315450854|gb|ADU24415.1| hypothetical protein Rumal_3992 [Ruminococcus albus 7]
          Length = 329

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 23/91 (25%)

Query: 11  IRVLMYC----AIHNDYPNRI---------SQIAEACCISELFLFKILQPLVKAGIVE-- 55
           IRVLMY     +   D  N +           IAE   IS   + K +  L KAGI++  
Sbjct: 141 IRVLMYLFFRLSKSGDVTNDLVFKSKFTAYKAIAEQLGISVQTVRKAIAHLRKAGIIKIG 200

Query: 56  -TVRGRRGGVRLCRP-------ADQITILDV 78
            +V     G  L  P         + T+ ++
Sbjct: 201 CSVEYSNNGHSLAFPVHRTTFSLSECTVAEI 231


>gi|238061296|ref|ZP_04606005.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237883107|gb|EEP71935.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 332

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    ISE  +++ +  L  AG+ V   RGR GG RL
Sbjct: 1  MVLLLQSREAMTAAELARELEISERTVYRDVLALSAAGVPVYADRGRAGGYRL 53


>gi|226362782|ref|YP_002780560.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241267|dbj|BAH51615.1| putative IclR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 267

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L   A H      ++ +A+   IS    F++L  L + G+V+
Sbjct: 18 AVRLLRELAAHPRTGATVTTLAKGVGISRPTAFRLLYSLERTGLVD 63


>gi|118470971|ref|YP_888114.1| GntR family transcriptional regulator [Mycobacterium smegmatis
          str. MC2 155]
 gi|118172258|gb|ABK73154.1| regulatory protein GntR, HTH [Mycobacterium smegmatis str. MC2
          155]
          Length = 244

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             D      +++E   +S   +   +  L + G++   RGR GG 
Sbjct: 34 RPGDRLPTERELSEMLDVSRTTVRTAVAVLEREGLIAVRRGRGGGF 79


>gi|323357502|ref|YP_004223898.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273873|dbj|BAJ74018.1| transcriptional regulator [Microbacterium testaceum StLB037]
          Length = 238

 Score = 40.3 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
               +      ++A    +S   + + L+ L  AG +ET RGR GG
Sbjct: 38 LVAPGESLPAERELAALYGVSRDTVREALRELADAGWLETRRGRYGG 84


>gi|302538888|ref|ZP_07291230.1| transcriptional regulator [Streptomyces sp. C]
 gi|302447783|gb|EFL19599.1| transcriptional regulator [Streptomyces sp. C]
          Length = 338

 Score = 40.3 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 14 LMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC--- 67
          L+  A+   +      + +A    +SE  + +  Q L +AG+ + + RGR GG RL    
Sbjct: 6  LIRMALLVQSSPGLTAASLALELGVSERTVIRDAQALQEAGVPIRSERGRTGGYRLAPGY 65

Query: 68 -------RPADQITIL 76
                 RPA+  T+ 
Sbjct: 66 RTRLTTLRPAEAETLY 81


>gi|72162065|ref|YP_289722.1| iron dependent repressor [Thermobifida fusca YX]
 gi|71915797|gb|AAZ55699.1| iron dependent repressor [Thermobifida fusca YX]
          Length = 229

 Score = 40.3 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++V+         P  IS++AE   +S   +  +L+ L + G+V+  R   G VRL 
Sbjct: 14 DY-VKVIYDLQERGSGPVTISRVAERLAVSNSSVSGMLRKLGELGLVDHQR--YGDVRLT 70

Query: 68 RPADQITILDVVK 80
             D++ +  V++
Sbjct: 71 PTGDKVALA-VLR 82


>gi|298243826|ref|ZP_06967633.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297556880|gb|EFH90744.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 429

 Score = 40.3 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +LM              +AE   +SE  +++ L+ L  AGI V T RG  GG  L
Sbjct: 7  LTILMLL--QTKGRMTARDLAERLEVSERTIYRDLEALGIAGIPVYTERGHGGGCEL 61


>gi|307320717|ref|ZP_07600129.1| putative transcriptional regulator, ArsR family [Sinorhizobium
           meliloti AK83]
 gi|306893644|gb|EFN24418.1| putative transcriptional regulator, ArsR family [Sinorhizobium
           meliloti AK83]
          Length = 137

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 25/101 (24%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
           +   H        +IA    +    +   L  L +AG+V T R           +  I  
Sbjct: 24  FLVKHEPDGLPAGEIARLLNVPHNTMSTHLAQLQRAGLVTTRR----------QSRSI-- 71

Query: 76  LDVVKA-TEE-----SFFVAECFASHKIDC-----PLVGSC 105
             + +A  +      SF + +C A H   C      L   C
Sbjct: 72  --IYRADLDGLRHVVSFLLKDCCAGHPDVCAPLVADLTPCC 110


>gi|258654890|ref|YP_003204046.1| IclR family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258558115|gb|ACV81057.1| transcriptional regulator, IclR family [Nakamurella multipartita
          DSM 44233]
          Length = 265

 Score = 40.3 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           IR+L   A        +S+IA    +++  +  +   L + G+V   R    G  L R
Sbjct: 22 AIRILDLLAEQRGQTLTLSEIARGLGLAKSSVSNMCAALEEGGLV---RRTAAGYLLGR 77


>gi|256783174|ref|ZP_05521605.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 309

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   L + +  L + G  V  V+G  GG RL
Sbjct: 33 LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 70


>gi|328880520|emb|CCA53759.1| hypothetical protein SVEN_0472 [Streptomyces venezuelae ATCC 10712]
          Length = 193

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLC--- 67
           RVL+  A       R+  +A AC ++E  +  I+  L  AG +     GRR   RL    
Sbjct: 19  RVLVVIARDPG--VRLRDVAAACGVTERTVQAIVADLEAAGYLTHAREGRRNRYRLAPGK 76

Query: 68  --RPAD----QIT-ILDVVKATEESFFVAECFASHKID 98
             R       +IT +LD++KA+          A    D
Sbjct: 77  RFRHPLEGDYEITGLLDLLKASPGDGSTGRHAADRDGD 114


>gi|300779642|ref|ZP_07089498.1| ArsR family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
 gi|300533752|gb|EFK54811.1| ArsR family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
          Length = 94

 Score = 40.3 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60
          +R+L   A     P  +S++A    +S+  +   L+ L  AG++ +T +GR
Sbjct: 23 LRLLSQLAEDGCGPISVSELAAQSGLSQPTVSHHLKKLTDAGLLTKTRQGR 73


>gi|311897098|dbj|BAJ29506.1| putative DeoR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 328

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           +++    +S   L + +  L + G  VE  RG  GG +L 
Sbjct: 24 EELSARLGVSGRTLRRDVDRLRELGYPVEARRGVDGGYQLA 64


>gi|300783126|ref|YP_003763417.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299792640|gb|ADJ43015.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 244

 Score = 40.3 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          L   A     P   + +A    +S + + + L  L + G+VET RGR GG
Sbjct: 36 LGLLADQEQLP-SEADLAAQFGVSTVTVREALVALRQQGLVETRRGRSGG 84


>gi|83953692|ref|ZP_00962413.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83841637|gb|EAP80806.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 247

 Score = 40.3 bits (94), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74
           ++     ++++    +S   + + L+ L    ++ T RG  GG  + R       A QIT
Sbjct: 31  DERLPSEAELSAQFNVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQAQQIT 90

Query: 75  ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAFFD 120
              ++ +  +  F   C   FA  +   PL  +      L    NA   
Sbjct: 91  TSTLLLSMNDVSFETACEARFALERACAPLSAARRQEHHLDAMQNALAA 139


>gi|116662392|ref|YP_829445.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116613171|gb|ABK05864.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
          Length = 277

 Score = 40.3 bits (94), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 17/79 (21%)

Query: 3   LTKRTDYGIRVLMY-------CAIHNDYP------NRISQIAEACCISELFLF-KILQPL 48
           ++ RT  G+  +          A  +          + + +A    IS   L  KIL  L
Sbjct: 67  MSARTRLGLSAVTEISEVATLMAFQSGKDQEAPQFLQTASLAARTGISPGHLRSKILPRL 126

Query: 49  VKAGIVETVRGRRGGVRLC 67
           V+ G + +   R GG  L 
Sbjct: 127 VERGWILS---RGGGWALS 142


>gi|329927127|ref|ZP_08281472.1| HTH domain protein [Paenibacillus sp. HGF5]
 gi|328938670|gb|EGG35050.1| HTH domain protein [Paenibacillus sp. HGF5]
          Length = 313

 Score = 40.3 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++R    I+++M    +      + ++A+   +S   + + L  L   G+ + +V+G
Sbjct: 1  MQKSQRL---IQLMMMI--NAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQG 55

Query: 60 RRGGVRL 66
          R GG RL
Sbjct: 56 RGGGYRL 62


>gi|261409202|ref|YP_003245443.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261285665|gb|ACX67636.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 313

 Score = 40.3 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++R    I+++M    +      + ++A+   +S   + + L  L   G+ + +V+G
Sbjct: 1  MQKSQRL---IQLMMMI--NAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQG 55

Query: 60 RRGGVRL 66
          R GG RL
Sbjct: 56 RGGGYRL 62


>gi|308174035|ref|YP_003920740.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus amyloliquefaciens DSM 7]
 gi|307606899|emb|CBI43270.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus amyloliquefaciens DSM 7]
 gi|328552839|gb|AEB23331.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus amyloliquefaciens TA208]
 gi|328912365|gb|AEB63961.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus amyloliquefaciens LL3]
          Length = 325

 Score = 40.3 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70
          L+   +   D      +I++A   S   ++K ++ L K G  VE VR +  G RL +   
Sbjct: 9  LIDLFSEAGDGFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 66

Query: 71 ----DQITIL 76
               +I   
Sbjct: 67 KLSESEIRFG 76


>gi|289665634|ref|ZP_06487215.1| repressor [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 164

 Score = 40.3 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                    +AE   I    L + ++ L + G  V    G  GG RL + A  + +L  
Sbjct: 16 QGGRSWSGVALAERLDIHPRSLRRDIERLRELGYPVHAAPGSGGGYRLGQGASALPLL-- 73

Query: 79 VKATEESFFVA 89
              EE   + 
Sbjct: 74 ---FEEDEALT 81


>gi|269128367|ref|YP_003301737.1| Helix-turn-helix type 11 domain-containing protein
          [Thermomonospora curvata DSM 43183]
 gi|268313325|gb|ACY99699.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 317

 Score = 40.3 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL--- 66
          +R+L        +P    ++A    +SE  L + +  L + G  V+  RG  GG +L   
Sbjct: 2  LRLLSLLQTRRYWPGP--ELAAKLGVSERTLRRDIDRLRELGYPVDAERGVGGGYQLRSG 59

Query: 67 -CRPA 70
             P 
Sbjct: 60 TAMPP 64


>gi|258652012|ref|YP_003201168.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258555237|gb|ACV78179.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 333

 Score = 40.3 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          + +      +++AE   + E  + + +  L   GI +E   GR GG R+ 
Sbjct: 14 LQSAGVRTATELAERFDVDERTIRRTVDRLRDLGIPIEARPGRYGGYRIA 63


>gi|312196533|ref|YP_004016594.1| hypothetical protein FraEuI1c_2693 [Frankia sp. EuI1c]
 gi|311227869|gb|ADP80724.1| hypothetical protein FraEuI1c_2693 [Frankia sp. EuI1c]
          Length = 424

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +++A+   +S   L + ++ L + G  V   RG  GG +L
Sbjct: 75  AELADRLAVSARTLRRDVERLRELGYPVRASRGVAGGYQL 114


>gi|126727693|ref|ZP_01743525.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703109|gb|EBA02210.1| transcriptional regulator, BadM/Rrf2 family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 107

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           + D       I      +   + ++L  L  A              L R  + I + DV 
Sbjct: 7   NPDRLRISLDITNHAEANPAAVRRVLGRLRIA--------------LARQPESIILADVY 52

Query: 80  KATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNAFFDVLTQYSIECL 130
            A +ES    +        C +      C L SV+ +   +      + ++  +
Sbjct: 53  LALDESLIATD-GDQQASTCSVDYALQRCVL-SVMDQIEQSLIQHRGKTTLSEV 104


>gi|312136709|ref|YP_004004046.1| phosphate uptake regulator, phou [Methanothermus fervidus DSM
          2088]
 gi|311224428|gb|ADP77284.1| phosphate uptake regulator, PhoU [Methanothermus fervidus DSM
          2088]
          Length = 305

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +++++Y     + P+  ++IA+   IS  ++ K+LQPL+  G+V+
Sbjct: 15 LKIILY-----ENPSTQAEIAKKLGISRRYVTKLLQPLINKGVVK 54


>gi|206900569|ref|YP_002250406.1| transcriptional repressor of the xylose operon, putative
          [Dictyoglomus thermophilum H-6-12]
 gi|206739672|gb|ACI18730.1| transcriptional repressor of the xylose operon, putative
          [Dictyoglomus thermophilum H-6-12]
          Length = 387

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 15/64 (23%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRG---------G 63
          +  + P   ++IA    +S   +   ++ L+K G+V      ++ +GR+G         G
Sbjct: 21 LREEGPISRAEIARRLGLSRPTVSTHIKDLLKEGLVIEVGKGKSSKGRKGILLKYNARHG 80

Query: 64 VRLC 67
            L 
Sbjct: 81 YFLA 84


>gi|126731416|ref|ZP_01747222.1| transcriptional regulator, GntR family protein [Sagittula
          stellata E-37]
 gi|126707952|gb|EBA07012.1| transcriptional regulator, GntR family protein [Sagittula
          stellata E-37]
          Length = 240

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +  D     +Q+AE   ++   +   +  LV+AG++ + RG   GV +     Q  I   
Sbjct: 29 LPGDKLPTEAQMAERFGVNRHTVRHGVAALVEAGVLRSRRGS--GVFVAAAPTQYPIGAR 86

Query: 79 VKATE 83
          V+ TE
Sbjct: 87 VRFTE 91


>gi|320334882|ref|YP_004171593.1| putative transcriptional regulator [Deinococcus maricopensis DSM
          21211]
 gi|319756171|gb|ADV67928.1| putative transcriptional regulator [Deinococcus maricopensis DSM
          21211]
          Length = 323

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +RVL    +         +++A    +S   + + +  L   GI VE  RG  G  RL
Sbjct: 5  SMRVLTVLELLQARECVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRL 63


>gi|261409562|ref|YP_003245803.1| GntR family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|329929244|ref|ZP_08283003.1| transcriptional regulator, GntR family [Paenibacillus sp. HGF5]
 gi|261286025|gb|ACX67996.1| transcriptional regulator, GntR family [Paenibacillus sp.
          Y412MC10]
 gi|328936803|gb|EGG33242.1| transcriptional regulator, GntR family [Paenibacillus sp. HGF5]
          Length = 121

 Score = 39.9 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 11 IRVLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          ++++ Y          +  D    + ++A    I+   + +  Q L + GIVET RG
Sbjct: 13 LQIMTYLKKEIIIGKLLPGDKIPSVRELASELQINPNTVQRTFQELEREGIVETRRG 69


>gi|298291512|ref|YP_003693451.1| hypothetical protein Snov_1522 [Starkeya novella DSM 506]
 gi|296928023|gb|ADH88832.1| conserved hypothetical protein [Starkeya novella DSM 506]
          Length = 306

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 11  IRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVRLCR 68
           +  L   A      P  ++++A A  +S   +  ILQ  V+ G+V  V GR RGG  L  
Sbjct: 214 LVALALFATGGTGRPTPVAELARAYRVSRSHVVDILQNAVQEGLVRRVEGRERGGF-LAE 272

Query: 69  P 69
           P
Sbjct: 273 P 273


>gi|225165691|ref|ZP_03727492.1| Transcriptional regulators-like protein [Opitutaceae bacterium
          TAV2]
 gi|224800067|gb|EEG18495.1| Transcriptional regulators-like protein [Opitutaceae bacterium
          TAV2]
          Length = 444

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           D      +      +S + L K ++ L + G ++T RG  GG RL R
Sbjct: 49 GDRLPPEREFCAELGVSRVTLRKAMESLHREGFLQTRRG--GGTRLAR 94


>gi|147921363|ref|YP_684823.1| ArsR family transcriptional regulator [uncultured methanogenic
          archaeon RC-I]
 gi|110620219|emb|CAJ35497.1| putative transcription regulator (ArsR family) [uncultured
          methanogenic archaeon RC-I]
          Length = 112

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+Y  A        ++++AE   IS+  + + L  L  AGIV++ +
Sbjct: 28 LIYLLASDGKERICVTELAEQLGISQPAVSRHLSTLKHAGIVKSEK 73


>gi|320354020|ref|YP_004195359.1| GntR domain-containing protein [Desulfobulbus propionicus DSM
          2032]
 gi|320122522|gb|ADW18068.1| GntR domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 234

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 9  YGIRVLMY----------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          Y  R ++            A   D      ++AE+  +S   L +    L + GI+E+ +
Sbjct: 10 YAYRAIIDRIESMIADGELA-PGDRLPPERKLAESLGVSRGSLRQAFHILAERGIIESRQ 68

Query: 59 GRRGGVRLC 67
          G  G   L 
Sbjct: 69 G-DGTYLLA 76


>gi|21225792|ref|NP_631571.1| DeoR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|7799263|emb|CAB90885.1| putative DeoR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
          Length = 343

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   L + +  L + G  V  V+G  GG RL
Sbjct: 36 LAERLDVSARTLRRDVDRLRELGYPVRAVKGPDGGYRL 73


>gi|89068852|ref|ZP_01156235.1| transcriptional regulator, ArsR family protein [Oceanicola
          granulosus HTCC2516]
 gi|89045622|gb|EAR51685.1| transcriptional regulator, ArsR family protein [Oceanicola
          granulosus HTCC2516]
          Length = 112

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +R L+ CA           IA A       +   L  L  AG+V++VR GR   +R    
Sbjct: 22 LRALI-CAGPEG--MTAGNIAAAQGAKANTMSSHLSVLSAAGLVQSVREGRH--IRYSAR 76

Query: 70 ADQITILDVVKATEESFFVAECFASHKIDC 99
           ++I   +V+     SF + +C       C
Sbjct: 77 PERI--GEVL-----SFLIDDCCGGEPGRC 99


>gi|312136318|ref|YP_004003655.1| signal transduction protein with cbs domains [Methanothermus
          fervidus DSM 2088]
 gi|311224037|gb|ADP76893.1| putative signal transduction protein with CBS domains
          [Methanothermus fervidus DSM 2088]
          Length = 293

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
               +  +IA     +   +   +Q L   G+V+ V G RGG +
Sbjct: 21 KGRSIKGEEIASKLNRNPGTIRNQMQALRSLGLVKGVPGPRGGYK 65


>gi|284045417|ref|YP_003395757.1| GntR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949638|gb|ADB52382.1| regulatory protein GntR HTH [Conexibacter woesei DSM 14684]
          Length = 272

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      ++ +   +S   L + L+ L   G++    G+ GG        + T+ D 
Sbjct: 49  AQGERLPSERELCQTFGVSRATLREALRSLEALGLLAIRPGKTGG-AFAVRPSESTLGDA 107

Query: 79  VKAT 82
           + A 
Sbjct: 108 LSAL 111


>gi|116248852|ref|YP_764693.1| GntR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253502|emb|CAK11894.1| putative GntR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 251

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 14/120 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-----ADQIT- 74
           ++       +A++  IS   + + L+ L    ++ + RG  GG  + RP     +  IT 
Sbjct: 33  DERLPTEEDLAKSFGISRPTVREALKRLAAQNLIRSKRGPAGGNFVKRPDPEGLSKAITG 92

Query: 75  -----ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
                +   + A +    +     +  + C L  +    S L          L   +I  
Sbjct: 93  AATLLVG--IGAFDIEEIITARLETETVCCRLAAANRDESHLAAMEAEIAVQLDP-TISD 149


>gi|255023691|ref|ZP_05295677.1| hypothetical protein LmonocyFSL_10125 [Listeria monocytogenes FSL
          J1-208]
          Length = 35

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAE 32
          M +T +  YG+ + +  A    D P  +  IA+
Sbjct: 1  MKITTKGRYGLTITLELAKRIGDGPISLRSIAQ 33


>gi|45358628|ref|NP_988185.1| BadM/Rrf2 family transcriptional regulator [Methanococcus
          maripaludis S2]
 gi|45047494|emb|CAF30621.1| conserved hypothetical archaeal protein [Methanococcus
          maripaludis S2]
          Length = 144

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+   ++L     H+       +IA         + + ++ L   G VET +G+
Sbjct: 1  MKIDGLTE---KILTLLKKHS----TTREIAAELETHPKNIDRYIRVLRDLGFVETKKGK 53

Query: 61 RGGVRLC 67
           GGV L 
Sbjct: 54 TGGVFLT 60


>gi|15964830|ref|NP_385183.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300900|ref|ZP_07580669.1| putative transcriptional regulator, ArsR family [Sinorhizobium
           meliloti BL225C]
 gi|15074009|emb|CAC45656.1| Transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306903855|gb|EFN34441.1| putative transcriptional regulator, ArsR family [Sinorhizobium
           meliloti BL225C]
          Length = 137

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 25/101 (24%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
           +   H        +IA    +    +   L  L +AG+V T R           +  I  
Sbjct: 24  FLVKHEPDGLPAGEIARLLNVPHNTMSTHLAQLQRAGLVTTRR----------QSRSI-- 71

Query: 76  LDVVKA-TEE-----SFFVAECFASHKIDC-----PLVGSC 105
             + +A  +      SF + +C A H   C      L   C
Sbjct: 72  --IYRADLDGLRHVVSFLLKDCCAGHPDVCAPLVADLTPCC 110


>gi|305663267|ref|YP_003859555.1| transcriptional regulator, TrmB [Ignisphaera aggregans DSM 17230]
 gi|304377836|gb|ADM27675.1| transcriptional regulator, TrmB [Ignisphaera aggregans DSM 17230]
          Length = 125

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          + TD  +R+ +Y  + ++ P    +IA +  I    +   L+     GIV   R   GG 
Sbjct: 5  RLTDTAMRIYIYM-LESNTPLSAREIARSLNIPVSTVSYYLKRFKDMGIV---REAGGGY 60

Query: 65 RLCRP 69
           + R 
Sbjct: 61 IVVRK 65


>gi|218295632|ref|ZP_03496428.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
 gi|218243791|gb|EED10318.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
          Length = 844

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +RVL Y A H +      ++A     S    + +L  LV+ G    V+G  G   L R 
Sbjct: 13 ALRVLAYLAEHPEG-VEAKEVARHLGRSLSAAYALLNSLVEEGF--AVKG-EGRYTLARA 68


>gi|154686491|ref|YP_001421652.1| hypothetical protein RBAM_020590 [Bacillus amyloliquefaciens
          FZB42]
 gi|154352342|gb|ABS74421.1| BirA [Bacillus amyloliquefaciens FZB42]
          Length = 325

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70
          L+   +   D      +I++A   S   ++K ++ L K G  VE VR +  G RL +   
Sbjct: 9  LIDLFSEAGDGFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 66

Query: 71 ----DQITIL 76
               +I   
Sbjct: 67 KLSESEIRFG 76


>gi|258650361|ref|YP_003199517.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258553586|gb|ACV76528.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 325

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   + + +  L   G  V   +G  GG RL
Sbjct: 29 LAERLEVSPRTVRRDVDRLRDLGYPVRATKGPDGGYRL 66


>gi|145222250|ref|YP_001132928.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK]
 gi|145214736|gb|ABP44140.1| transcriptional regulator, ArsR family [Mycobacterium gilvum
           PYR-GCK]
          Length = 183

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   A +      +  IA +  +S+  +   L+ L  AGI+++ R
Sbjct: 96  LRLLSLIASNPGGEACVCDIAASFDLSQPTISHHLKVLRTAGILDSER 143


>gi|110635459|ref|YP_675667.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286443|gb|ABG64502.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1]
          Length = 356

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 9  YGIRVLMYCAIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          YG+  L Y   H+D P       + Q+A    I+ + + ++ Q L  AG++E  RG+ G 
Sbjct: 22 YGL--LSYYLSHSDIPYGTKLQSVRQLAAELGIAPMTVSQVYQQLRDAGLIEMRRGK-GA 78

Query: 64 VRLCRPADQITILD 77
              R   +  + D
Sbjct: 79 YS-ARDPHK-KLGD 90


>gi|182440267|ref|YP_001827986.1| GntR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468783|dbj|BAG23303.1| putative GntR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 253

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70
                +      ++++   IS + L + L+ L   G+VE+ RGR GG   L R A
Sbjct: 50  LVAPGERLPSERELSQQLRISRVTLREALKVLQDQGMVESRRGRYGGTFVLPRTA 104


>gi|300870971|ref|YP_003785842.1| ribonuclease BN [Brachyspira pilosicoli 95/1000]
 gi|300688670|gb|ADK31341.1| ribonuclease BN, putative [Brachyspira pilosicoli 95/1000]
          Length = 539

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
           I+N     +  +A    ++   L  I   L +A   V+ V G      L  P + ITI D
Sbjct: 430 INNKKCMSMYDLARDLRVAPSVLNDIADSLEEAQYIVKIVNGSTTSYTLACPPEHITIGD 489

Query: 78  VV 79
           ++
Sbjct: 490 IL 491


>gi|262200795|ref|YP_003272003.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262084142|gb|ACY20110.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247]
          Length = 120

 Score = 39.9 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +R+L   A H      +  I+    +S+  +   L+ L +AG+V + R  
Sbjct: 35 LRLLSEVAAHPGGEACVCDISGPFELSQPTISHHLKVLREAGLVTSERRA 84


>gi|326780930|ref|ZP_08240195.1| GntR domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326661263|gb|EGE46109.1| GntR domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 253

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70
                +      ++++   IS + L + L+ L   G+VE+ RGR GG   L R A
Sbjct: 50  LVAPGERLPSERELSQQLRISRVTLREALKVLQDQGMVESRRGRYGGTFVLPRTA 104


>gi|284034738|ref|YP_003384669.1| AsnC family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283814031|gb|ADB35870.1| transcriptional regulator, AsnC family [Kribbella flavida DSM
           17836]
          Length = 161

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-----GRRGG-- 63
           +R L       D   R S +A    +S   + + +  L ++G++   R        G   
Sbjct: 26  LRALTD-----DPRARTSDLARRLGVSAPTVRERVARLEESGVIRGYRLELDPAALGLPV 80

Query: 64  ---VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
              VRL     QI    +V+  E +  V EC      DC L+    +      AL A  D
Sbjct: 81  AAWVRLKPGPGQIP--RIVELAERTPEVVECHRISGEDCFLI---RVQVPAIDALEALLD 135

Query: 121 VLT 123
            L 
Sbjct: 136 TLN 138


>gi|296108978|ref|YP_003615927.1| phosphate uptake regulator, PhoU [Methanocaldococcus infernus ME]
 gi|295433792|gb|ADG12963.1| phosphate uptake regulator, PhoU [Methanocaldococcus infernus ME]
          Length = 283

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + P    +IAE   IS  ++ K+L+PL+  GIV+
Sbjct: 23 EEAPETQDEIAEKLGISRRYVAKLLKPLINEGIVK 57


>gi|67078214|ref|YP_245834.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus
           cereus E33L]
 gi|66970520|gb|AAY60496.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus
           cereus E33L]
          Length = 301

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           K +   I  ++Y   H      +S +A    ++   L ++ Q
Sbjct: 169 KFSRLAIEAMIYIGKHYIEEITVSDVANHLAVNRSHLSRVFQ 210


>gi|302544715|ref|ZP_07297057.1| hypothetical protein SSOG_05140 [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462333|gb|EFL25426.1| hypothetical protein SSOG_05140 [Streptomyces himastatinicus ATCC
           53653]
          Length = 145

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               P   S++A     SE  + + L+ L  AG+V + R
Sbjct: 80  RAGEPITTSELATRLGSSEPQVSRTLRTLRDAGLVRSTR 118


>gi|228918505|ref|ZP_04081948.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228841121|gb|EEM86320.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 301

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           K +   I  ++Y   H      +S +A    ++   L ++ Q
Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSDVANHLAVNRSHLSRVFQ 210


>gi|330468339|ref|YP_004406082.1| DeoR family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328811310|gb|AEB45482.1| DeoR family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 338

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +AE   IS   + + +  L + G  +  V+G  GG RL 
Sbjct: 26 LAERLDISLRTVRRDVDRLRELGYPIAAVKGPDGGYRLS 64


>gi|311742034|ref|ZP_07715844.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
 gi|311314527|gb|EFQ84434.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
          Length = 116

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLC 67
          IRVL       D P ++  +      S   L + L  L +AG+V + R   GG    RL 
Sbjct: 32 IRVLELL---QDGPRQVRDLLAVLGTSSSNLSQQLAVLRRAGLVTSSR--AGGTVSYRLS 86

Query: 68 RP 69
           P
Sbjct: 87 TP 88


>gi|271965437|ref|YP_003339633.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270508612|gb|ACZ86890.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
          Length = 317

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 10 GIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            R++ +   +        ++++    +SE  + + +  L +AG+ V   RGR GG RL
Sbjct: 3  AARLMSLVLLLQARGGMTATELSRELEVSERTVHRDVLALSEAGVPVYADRGRGGGYRL 61


>gi|256824274|ref|YP_003148234.1| ArsR family transcriptional regulator [Kytococcus sedentarius DSM
          20547]
 gi|256687667|gb|ACV05469.1| transcriptional regulator, ArsR family [Kytococcus sedentarius
          DSM 20547]
          Length = 98

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          +R+L     H    + ++++AEA  IS+    + L+ L   G VE  R GR    RL
Sbjct: 22 LRLLDRMHHHPG--SSVAELAEAAGISQATASQALRTLRSQGWVEATRDGRSMRYRL 76


>gi|333028890|ref|ZP_08456954.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332748742|gb|EGJ79183.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 338

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL+   +          ++A    ++   + + ++ L   G  V  ++G  GG RL 
Sbjct: 16 RVLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 73


>gi|311893813|dbj|BAJ26221.1| putative MarR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 177

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 10  GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           G+R   V+    +H   P  I ++AE+   +   L + +  + +AG VETV G 
Sbjct: 51  GLRSSFVMELLRLHARGPMTIGELAESVHRTHSALSQKVAAMRRAGWVETVPGA 104


>gi|315647036|ref|ZP_07900149.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
 gi|315277238|gb|EFU40567.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
          Length = 106

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 18/66 (27%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKA 51
          M LT         L+  A  N         + P  + +I +A  IS+  + + L+ L +A
Sbjct: 1  MQLT---------LLTLAEPNRFNIVELLRNGPKSVGEIVQALGISQPHVSRHLRILSEA 51

Query: 52 GIVETV 57
          G+V + 
Sbjct: 52 GMVRSR 57


>gi|317049018|ref|YP_004116666.1| IclR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950635|gb|ADU70110.1| transcriptional regulator, IclR family [Pantoea sp. At-9b]
          Length = 261

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            ++L     H      + +IA+A  +    + +I+  L  A +V +     GG+RL 
Sbjct: 22 AAKILNALGEHPGG-MSLGEIAQAVDLPRSTVQRIVAALDNAQLVRST--GAGGLRLG 76


>gi|296141708|ref|YP_003648951.1| hypothetical protein Tpau_4041 [Tsukamurella paurometabola DSM
          20162]
 gi|296029842|gb|ADG80612.1| Helix-turn-helix type 11 domain protein [Tsukamurella
          paurometabola DSM 20162]
          Length = 316

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +++A+   +S   L + ++ L + G  V   RG  GG +L 
Sbjct: 24 TELADRLEVSVRTLRRDIERLRELGYPVNASRGVDGGYQLA 64


>gi|256392477|ref|YP_003114041.1| hypothetical protein Caci_3293 [Catenulispora acidiphila DSM
          44928]
 gi|256358703|gb|ACU72200.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 327

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          + +A    +S   + + +  L + G  +  V+G  GG RL 
Sbjct: 31 ADLAARLEVSPRTVRRDVDRLRELGYPIAAVKGPDGGYRLG 71


>gi|222444845|ref|ZP_03607360.1| hypothetical protein METSMIALI_00458 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434410|gb|EEE41575.1| hypothetical protein METSMIALI_00458 [Methanobrevibacter smithii
          DSM 2375]
          Length = 300

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          N    +   IAE    +   +   +Q L   G+V+ V G RGG +
Sbjct: 21 NGGSIKGEDIAEIMSRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65


>gi|148643674|ref|YP_001274187.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061]
 gi|261350584|ref|ZP_05976001.1| CBS domain protein [Methanobrevibacter smithii DSM 2374]
 gi|148552691|gb|ABQ87819.1| predicted transcriptional regulator [Methanobrevibacter smithii
          ATCC 35061]
 gi|288861367|gb|EFC93665.1| CBS domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 300

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          N    +   IAE    +   +   +Q L   G+V+ V G RGG +
Sbjct: 21 NGGSIKGEDIAEIMSRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65


>gi|326315133|ref|YP_004232805.1| IclR family transcriptional regulator [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gi|323371969|gb|ADX44238.1| transcriptional regulator, IclR family [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 259

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69
          +R+L   + ++     +S IA    I    + ++L+ L +A +V  +    G G  L R 
Sbjct: 10 LRILDQLSRYDAGGLSLSDIARQSGIPHPTVHRLLRDLAQARLVTLL--PDGRGYVLGRL 67

Query: 70 ADQITIL 76
          A ++ + 
Sbjct: 68 AYEVGLA 74


>gi|148252310|ref|YP_001236895.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404483|gb|ABQ32989.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score = 39.9 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+    P   ++IA+   +S   + + L+ L  +G++E       G  + RP        
Sbjct: 51  ALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEAR--AHRGAVVARP-------- 100

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
              + +    + E  A  +  C  + +  +T V R+ L A  + L   S
Sbjct: 101 ---SVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLS 146


>gi|288560309|ref|YP_003423795.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288543019|gb|ADC46903.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 308

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 11 IRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          ++ L+    ++D    +   IAE    +   +   +Q L    +V+ V G RGG +
Sbjct: 10 LQTLINLYQNSDGKSIKGEDIAEVMNRNPGTIRNQMQSLRSLSLVKGVPGPRGGYK 65


>gi|148822882|ref|YP_001287636.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|218753381|ref|ZP_03532177.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|253799287|ref|YP_003032288.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254550682|ref|ZP_05141129.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|289554552|ref|ZP_06443762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289761829|ref|ZP_06521207.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|297634225|ref|ZP_06952005.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297731212|ref|ZP_06960330.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|313658544|ref|ZP_07815424.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|148721409|gb|ABR06034.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|253320790|gb|ACT25393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289439184|gb|EFD21677.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289709335|gb|EFD73351.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|328459038|gb|AEB04461.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 218

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
          L+   +  +    +  +A A  ++     + L  L +AG+V + R G+R    L  P   
Sbjct: 27 LLDLLVQGER--SVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSDPQ-- 82

Query: 73 ITILDVVKAT 82
            + DVV+A 
Sbjct: 83 --VWDVVRAV 90


>gi|302552060|ref|ZP_07304402.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302469678|gb|EFL32771.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 323

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V+  +G  GG RL      P 
Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQASKGADGGYRLVAGKAMPP 72


>gi|294629874|ref|ZP_06708434.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
 gi|292833207|gb|EFF91556.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
          Length = 351

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 26 ELAERLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72


>gi|15608812|ref|NP_216190.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15841129|ref|NP_336166.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          CDC1551]
 gi|31792860|ref|NP_855353.1| transcriptional regulatory protein [Mycobacterium bovis
          AF2122/97]
 gi|121637581|ref|YP_977804.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148661470|ref|YP_001282993.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra]
 gi|167969210|ref|ZP_02551487.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|215404024|ref|ZP_03416205.1| transcription regulator ArsR [Mycobacterium tuberculosis 02_1987]
 gi|215411321|ref|ZP_03420129.1| transcription regulator ArsR [Mycobacterium tuberculosis
          94_M4241A]
 gi|215426996|ref|ZP_03424915.1| transcription regulator ArsR [Mycobacterium tuberculosis T92]
 gi|215430565|ref|ZP_03428484.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054]
 gi|215445860|ref|ZP_03432612.1| transcription regulator ArsR [Mycobacterium tuberculosis T85]
 gi|219557594|ref|ZP_03536670.1| transcription regulator ArsR [Mycobacterium tuberculosis T17]
 gi|224990056|ref|YP_002644743.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|254231869|ref|ZP_04925196.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C]
 gi|254364516|ref|ZP_04980562.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|260186623|ref|ZP_05764097.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis CPHL_A]
 gi|260200737|ref|ZP_05768228.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis T46]
 gi|260204942|ref|ZP_05772433.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis K85]
 gi|289443131|ref|ZP_06432875.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289447286|ref|ZP_06437030.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289569721|ref|ZP_06449948.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289574342|ref|ZP_06454569.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289745889|ref|ZP_06505267.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289750230|ref|ZP_06509608.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289753765|ref|ZP_06513143.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289757785|ref|ZP_06517163.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|294996623|ref|ZP_06802314.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis 210]
 gi|298525173|ref|ZP_07012582.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306775860|ref|ZP_07414197.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306779676|ref|ZP_07418013.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306784409|ref|ZP_07422731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306788776|ref|ZP_07427098.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306793111|ref|ZP_07431413.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306797491|ref|ZP_07435793.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306803372|ref|ZP_07440040.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306807954|ref|ZP_07444622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306967771|ref|ZP_07480432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306971967|ref|ZP_07484628.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307079681|ref|ZP_07488851.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307084256|ref|ZP_07493369.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|2916972|emb|CAA17604.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13881347|gb|AAK45980.1| transcriptional regulator, ArsR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31618450|emb|CAD96368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121493228|emb|CAL71699.1| Probable transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124600928|gb|EAY59938.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C]
 gi|134150030|gb|EBA42075.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148505622|gb|ABQ73431.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|224773169|dbj|BAH25975.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|289416050|gb|EFD13290.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289420244|gb|EFD17445.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289538773|gb|EFD43351.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289543475|gb|EFD47123.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289686417|gb|EFD53905.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289690817|gb|EFD58246.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289694352|gb|EFD61781.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289713349|gb|EFD77361.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|298494967|gb|EFI30261.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308215613|gb|EFO75012.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308327329|gb|EFP16180.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308330771|gb|EFP19622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308334594|gb|EFP23445.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308338381|gb|EFP27232.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308342104|gb|EFP30955.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308345575|gb|EFP34426.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308349893|gb|EFP38744.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308354514|gb|EFP43365.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308358489|gb|EFP47340.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308362430|gb|EFP51281.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308366113|gb|EFP54964.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323719763|gb|EGB28877.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326903288|gb|EGE50221.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
          Length = 218

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
          L+   +  +    +  +A A  ++     + L  L +AG+V + R G+R    L  P   
Sbjct: 27 LLDLLVQGER--SVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSDPQ-- 82

Query: 73 ITILDVVKAT 82
            + DVV+A 
Sbjct: 83 --VWDVVRAV 90


>gi|297197780|ref|ZP_06915177.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|197716631|gb|EDY60665.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 267

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           +R   VL   A   + P R+ +++EA  +    ++ +LQ LV+ G V T
Sbjct: 22 AVRTVAVLELLAARGERPARLRELSEALGVPRSSMYALLQTLVECGWVRT 71


>gi|317406396|gb|EFV86616.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 256

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           + VL Y A    +P  ++Q+A+   + +  L ++L  + +AG V   
Sbjct: 34 ALLVLDYLARAQ-HPPTLAQLAQRLDMPKSTLMRLLASMQRAGFVAAT 80


>gi|318058581|ref|ZP_07977304.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318077918|ref|ZP_07985250.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 338

 Score = 39.9 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL+   +          ++A    ++   + + ++ L   G  V  ++G  GG RL 
Sbjct: 16 RVLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 73


>gi|302872722|ref|YP_003841358.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          obsidiansis OB47]
 gi|302575581|gb|ADL43372.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          obsidiansis OB47]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++++   I+     ++ Q L + G+++T RG  
Sbjct: 28 RPGEKLPSVREMSQKFNINPNTAQRVFQELEREGLIKTERGIG 70


>gi|146343578|ref|YP_001208626.1| GntR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146196384|emb|CAL80411.1| putative transcriptional regulatory protein, GntR family
           [Bradyrhizobium sp. ORS278]
          Length = 224

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+    P   ++IA+   +S   + + L+ L  +G++E       G  + RP        
Sbjct: 32  ALAPGAPLDETEIAKRFNVSRTPVREALRQLAASGLIEAR--AHRGAVVARP-------- 81

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
              + +    + E  A  +  C  + +  +T V R+ L A  + L   S
Sbjct: 82  ---SVDRLTGMFEAMAELEGLCAGLAAQRMTPVERQRLEAIHEELRNLS 127


>gi|259415688|ref|ZP_05739608.1| ROK domain protein [Silicibacter sp. TrichCH4B]
 gi|259347127|gb|EEW58904.1| ROK domain protein [Silicibacter sp. TrichCH4B]
          Length = 413

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62
          R+L+   +H D     S++A    +S   +  IL+ L + G+V   E+ +GR G
Sbjct: 37 RLLLSL-LHQDGALPGSEMARRTGLSSQTVSVILRKLEQDGLVQRGESQKGRVG 89


>gi|170745518|ref|YP_001766975.1| Crp/FNR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659119|gb|ACB28173.1| transcriptional regulator, Crp/Fnr family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 281

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           A   D P    ++AE   +S + + ++LQ L + G++ T+RGRR
Sbjct: 200 AGQFDMPLTQRELAETLGLSSVHVNRVLQVLRRDGLI-TLRGRR 242


>gi|315426311|dbj|BAJ47952.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum
          subterraneum]
          Length = 263

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          TDY +R   Y A+    P   S+I++   I    ++++L  L + G + T  GR
Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIVTQSGR 74


>gi|315230134|ref|YP_004070570.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP]
 gi|315183162|gb|ADT83347.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP]
          Length = 59

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          V++        P + ++IAE   I +  + KI++ L K G + +
Sbjct: 6  VVLEVMKKAGKPLKSAEIAEMTGIPKKEVDKIIKKLKKEGKIVS 49


>gi|29828281|ref|NP_822915.1| GntR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29605384|dbj|BAC69450.1| putative GntR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 251

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          S++A    +S + L + L  L + G+V T RGR GG
Sbjct: 55 SELAGQLGVSTVTLREALMALRQQGLVTTRRGRGGG 90


>gi|260903952|ref|ZP_05912274.1| GntR family transcriptional regulator [Brevibacterium linens BL2]
          Length = 257

 Score = 39.5 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++AE   +S   L + +  L  AG V   RGR GG
Sbjct: 55 RELAEQLRVSRATLREAISELQTAGWVNVRRGRGGG 90


>gi|149008039|ref|ZP_01831587.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae
          SP18-BS74]
 gi|147760447|gb|EDK67424.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae
          SP18-BS74]
          Length = 88

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---GRRGGVRLCRP 69
          +++  A H ++     +IA+   +S   + +  + L K G +  V+   GR  GVR+ R 
Sbjct: 1  MMVVLANHPNWQVYSDEIAKRKGVSRDTVDRYFKILEKNGYLRIVKKGMGRGKGVRVFRF 60

Query: 70 ADQITILD 77
             + I D
Sbjct: 61 FSDVKISD 68


>gi|313682046|ref|YP_004059784.1| transcriptional regulator, arac family [Sulfuricurvum kujiense
          DSM 16994]
 gi|313154906|gb|ADR33584.1| transcriptional regulator, AraC family [Sulfuricurvum kujiense
          DSM 16994]
          Length = 291

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          RVL Y  +H D    ++++AE   IS   L +I +      + ET++     +RL + A 
Sbjct: 15 RVLSYIYLHIDTDLNVAELAEMEGISPHHLHRIFKEETGRNLFETIKS----IRLQKSAS 70


>gi|289671356|ref|ZP_06492431.1| repressor [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 129

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                    +AE   I    L + ++ L + G  V    G  GG RL + A  + +L  
Sbjct: 16 QGGRSWSGVALAERLDIHPRSLRRDIERLRELGYPVRAAPGSGGGYRLGQGAAALPLL-- 73

Query: 79 VKATEESFFVA 89
              EE   + 
Sbjct: 74 ---FEEDEALT 81


>gi|56965148|ref|YP_176880.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911392|dbj|BAD65919.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 321

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 12  RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L +   + N        +AE   +SE  + + +  L  AGI V   RG+ GG +L   
Sbjct: 5   RLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKL--- 61

Query: 70  ADQITILDVVK-----ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
                 LD  +      T+E       F S  ID  L+G  G T   ++A       L+ 
Sbjct: 62  ------LDGYRTQLTGLTKEEVKTL--FLSPPID--LLGDLGYTKNWQEAREKLLASLSS 111

Query: 125 YSIECLVRNRSSIK 138
            +       ++ I 
Sbjct: 112 ATSVDFADAQNRIY 125


>gi|297561022|ref|YP_003679996.1| hypothetical protein Ndas_2064 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296845470|gb|ADH67490.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 337

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++A+   ++   + + +  L   G  V   +G  GG +L 
Sbjct: 14 RVLTLLGLLQRRRVWTGPELADRLGVTPRTVRRDVDRLRALGYPVHASQGVGGGYQLG 71


>gi|120608961|ref|YP_968639.1| IclR family transcriptional regulator [Acidovorax citrulli
          AAC00-1]
 gi|120587425|gb|ABM30865.1| transcriptional regulator, IclR family [Acidovorax citrulli
          AAC00-1]
          Length = 259

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCRP 69
          +R+L   + ++     +S IA    I    + ++L+ L +A +V  +    G G  L R 
Sbjct: 10 LRILDQLSRYDAGGLSLSDIARQSGIPHPTVHRLLRDLAQARLVTLL--PDGRGYVLGRL 67

Query: 70 ADQITIL 76
          A ++ + 
Sbjct: 68 AFEVGLA 74


>gi|327310087|ref|YP_004336984.1| ATP-NAD/AcoX kinase [Thermoproteus uzoniensis 768-20]
 gi|326946566|gb|AEA11672.1| ATP-NAD/AcoX kinase [Thermoproteus uzoniensis 768-20]
          Length = 297

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+    Y ++ L         P     IAE   +    +   L  L KAG+VE      
Sbjct: 235 RLSPSMRYVLKTL-----EERGPLTSRSIAEFTGLPLRTVEYALNALRKAGLVEAK--IV 287

Query: 62  GGVR 65
           GG+R
Sbjct: 288 GGLR 291


>gi|89099205|ref|ZP_01172083.1| hypothetical protein B14911_07980 [Bacillus sp. NRRL B-14911]
 gi|89086051|gb|EAR65174.1| hypothetical protein B14911_07980 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
            + +IAE   I        L  L  AG++ +  G+ G  +  RP+    + D
Sbjct: 30 VTVQEIAENFSIHANVARLHLSKLEDAGLLVSKSGKTG--KGGRPSRHYKLSD 80


>gi|319646502|ref|ZP_08000731.1| hypothetical protein HMPREF1012_01767 [Bacillus sp. BT1B_CT2]
 gi|317391090|gb|EFV71888.1| hypothetical protein HMPREF1012_01767 [Bacillus sp. BT1B_CT2]
          Length = 189

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            L+  A        ++ I++    ++    K++  LVK G V++V  +       +    
Sbjct: 45  ALIAIAHLPPETATLTNISKKLGTTKQTANKLMTGLVKKGYVKSVPSQ-------KDKRS 97

Query: 73  ITILDVVKATEESFFVAECFAS 94
           I I       E    + EC   
Sbjct: 98  INIEM---TAEGKKALVECSER 116


>gi|313895891|ref|ZP_07829445.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975316|gb|EFR40777.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 255

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y +  + Y   H ++   + ++AE   IS  +L K+   
Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFAR 191


>gi|295705362|ref|YP_003598437.1| DeoR family transcriptional regulator [Bacillus megaterium DSM
          319]
 gi|294803021|gb|ADF40087.1| transcriptional regulator, DeoR family [Bacillus megaterium DSM
          319]
          Length = 319

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +LM+   +        ++AE   +S   + + L  L + G+ + + +GR GG R
Sbjct: 10 MLMFI--NTKRTFTAKELAEEFGLSVRTVQRYLLDLSELGLPLYSEKGRSGGYR 61


>gi|294499992|ref|YP_003563692.1| DeoR family transcriptional regulator [Bacillus megaterium QM
          B1551]
 gi|294349929|gb|ADE70258.1| transcriptional regulator, DeoR family [Bacillus megaterium QM
          B1551]
          Length = 319

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +LM+   +        ++AE   +S   + + L  L + G+ + + +GR GG R
Sbjct: 10 MLMFI--NTKRTFTAKELAEEFGLSVRTVQRYLLDLSELGLPLYSEKGRSGGYR 61


>gi|52079699|ref|YP_078490.1| DNA-binding transcriptional regulator [Bacillus licheniformis ATCC
           14580]
 gi|52785062|ref|YP_090891.1| hypothetical protein BLi01292 [Bacillus licheniformis ATCC 14580]
 gi|52002910|gb|AAU22852.1| hypothetical DNA-binding protein,putative transcriptional regulator
           [Bacillus licheniformis ATCC 14580]
 gi|52347564|gb|AAU40198.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 189

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            L+  A        ++ I++    ++    K++  LVK G V++V  +       +    
Sbjct: 45  ALIAIAHLPPETATLTNISKKLGTTKQTANKLMTGLVKKGYVKSVPSQ-------KDKRS 97

Query: 73  ITILDVVKATEESFFVAECFAS 94
           I I       E    + EC   
Sbjct: 98  INIEM---TAEGKKALVECSER 116


>gi|312621317|ref|YP_004022930.1| GntR family transcriptional regulator [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312201784|gb|ADQ45111.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++A+   I+     ++ Q L + G+ +T RG  
Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70


>gi|297618886|ref|YP_003706991.1| amino acid-binding ACT domain-containing protein [Methanococcus
          voltae A3]
 gi|297377863|gb|ADI36018.1| amino acid-binding ACT domain protein [Methanococcus voltae A3]
          Length = 144

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +T +T   + ++       +       +A         + + ++ L   G+VET +G+
Sbjct: 1  MEVTGKT---LEIMQAI----EGVCTTKDVAGKLETHPKNIDRHIRVLRDLGLVETRKGK 53

Query: 61 RGGVRLC 67
           GG+ L 
Sbjct: 54 FGGICLT 60


>gi|315649745|ref|ZP_07902829.1| transcriptional regulator, GntR family protein [Paenibacillus
          vortex V453]
 gi|315274933|gb|EFU38309.1| transcriptional regulator, GntR family protein [Paenibacillus
          vortex V453]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 11 IRVLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          ++++ Y             D    + ++A    I+   + +  Q L + GIVET RG
Sbjct: 13 LQIMTYLKKEIIIGKLQPGDKIPSVRELASELQINPNTVQRTFQELEREGIVETRRG 69


>gi|307325717|ref|ZP_07604917.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
 gi|306888505|gb|EFN19491.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
          Length = 277

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           + VL    +  D P+R++ +A    + +  + ++LQ    AG    + G  G  +
Sbjct: 26 ALEVLDAL-VQPDAPHRLADLAARTGLPKPTVHRLLQTFADAGY--AIPGPGGSYQ 78


>gi|238927173|ref|ZP_04658933.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884955|gb|EEQ48593.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 255

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ-------------PLVKAGIV 54
           Y +  + +   H   P  + ++A+   +S  +L K+                L +AG +
Sbjct: 153 YLLHAMRHMEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHL 211


>gi|25027430|ref|NP_737484.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|23492711|dbj|BAC17684.1| putative transcription regulator [Corynebacterium efficiens YS-314]
          Length = 147

 Score = 39.5 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   A     P  ++++ E   +S+  +   L+ + +AG++E  R
Sbjct: 76  LRILSQLAAGGCGPVSVNELTEMMGLSQPTISHHLKKMTEAGLLERTR 123


>gi|299136916|ref|ZP_07030099.1| transcriptional regulator, AraC family [Acidobacterium sp.
           MP5ACTX8]
 gi|298601431|gb|EFI57586.1| transcriptional regulator, AraC family [Acidobacterium sp.
           MP5ACTX8]
          Length = 321

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           RVL Y A H D    + ++A+   IS  +L  + + 
Sbjct: 223 RVLAYIAEHLDQTITLEELAKVAEISPNYLIALFRQ 258


>gi|290969237|ref|ZP_06560762.1| biotin-(acetyl-CoA-carboxylase) ligase [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290780743|gb|EFD93346.1| biotin-(acetyl-CoA-carboxylase) ligase [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 328

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71
          +L Y   H        +I+EA  IS   ++K ++ L   G V E+    + G  L    +
Sbjct: 5  ILDYLTAHEGEFVSGQRISEALGISRTAVWKHIKVLKARGYVIESY--TKKGYCLREAPE 62

Query: 72 QI 73
           I
Sbjct: 63 LI 64


>gi|24380061|ref|NP_722016.1| hypothetical protein SMU.1683c [Streptococcus mutans UA159]
 gi|24378053|gb|AAN59322.1|AE014997_12 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 307

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 12 RVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R+L   ++ +D       ++AE   +S+  +++ L+ L +AGI + +  GR GG+ L + 
Sbjct: 5  RLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGLSLMKN 64


>gi|299820925|ref|ZP_07052814.1| possible transcriptional regulator [Listeria grayi DSM 20601]
 gi|299817946|gb|EFI85181.1| possible transcriptional regulator [Listeria grayi DSM 20601]
          Length = 313

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          ++Y  + ND      ++A+   +S   +++ ++ L +AGI +   +GR GG+ L
Sbjct: 23 MVYLLMSNDK-LSAKELADKLEVSVRSVYRYMENLSEAGIPIYASQGRNGGISL 75


>gi|228992816|ref|ZP_04152741.1| Acetoin transport repressor [Bacillus pseudomycoides DSM 12442]
 gi|228766865|gb|EEM15503.1| Acetoin transport repressor [Bacillus pseudomycoides DSM 12442]
          Length = 111

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A ++  P  + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 1  MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 45


>gi|228998861|ref|ZP_04158446.1| Acetoin transport repressor [Bacillus mycoides Rock3-17]
 gi|228760877|gb|EEM09838.1| Acetoin transport repressor [Bacillus mycoides Rock3-17]
          Length = 111

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A ++  P  + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 1  MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 45


>gi|229006380|ref|ZP_04164058.1| Acetoin transport repressor [Bacillus mycoides Rock1-4]
 gi|228754867|gb|EEM04234.1| Acetoin transport repressor [Bacillus mycoides Rock1-4]
          Length = 139

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A ++  P  + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 29 MLAPNDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|163747287|ref|ZP_02154641.1| probable deoR-family transcriptional regulator [Oceanibulbus
          indolifex HEL-45]
 gi|161379397|gb|EDQ03812.1| probable deoR-family transcriptional regulator [Oceanibulbus
          indolifex HEL-45]
          Length = 229

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66
          ++  +  + ++++AE    S   L + +  L   G V  +  GR GGV+L
Sbjct: 3  SLRRNGTSTVAELAEEVGTSRRTLLRDIAALRDEGFVIHSESGRGGGVQL 52


>gi|108803740|ref|YP_643677.1| GntR family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108764983|gb|ABG03865.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 321

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA---DQITI 75
             +    I  +A    ++   + +++  L + G VE+ RG   GV +  P    + + +
Sbjct: 31 RPGERLPSIRALAGFLRVNRNTVARVMADLERGGYVESRRGS--GVYVVEPPAREEDLRL 88

Query: 76 LDVVKAT 82
            V++  
Sbjct: 89 QRVLERV 95


>gi|282865641|ref|ZP_06274692.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
 gi|282559685|gb|EFB65236.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
          Length = 337

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   IS   + + +  L + G  +   +G  GG RL
Sbjct: 36 LAERLDISPRTVRRDVDRLRELGYPIAAFKGPEGGYRL 73


>gi|73661907|ref|YP_300688.1| hypothetical protein SSP0598 [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72494422|dbj|BAE17743.1| conserved hypothetical protein [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 230

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
          +  AI  +     S++A    +S+  + + +Q L   G+ +    G+ GG +L    +  
Sbjct: 10 LVLAIQENRQITASELATDLNVSKRTILRDIQDLEDQGVKILAKHGKLGGYQLQETPNSY 69


>gi|254388869|ref|ZP_05004101.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294813165|ref|ZP_06771808.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326441538|ref|ZP_08216272.1| DeoR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197702588|gb|EDY48400.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294325764|gb|EFG07407.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 320

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++A    +S   + + +  L + G  VE  +G  GG RL      P 
Sbjct: 24 SELARRLEVSPRTIRRDIDRLRELGYPVEATKGPVGGYRLVAGTAMPP 71


>gi|325289433|ref|YP_004265614.1| helix-turn-helix type 11 domain protein [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324964834|gb|ADY55613.1| helix-turn-helix type 11 domain protein [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 298

 Score = 39.5 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +     L+Y  +   +     + AE   +S   +++ ++ L +AG+ +   +G
Sbjct: 1  MQINRFFE-----LIYI-LLEKHTVTAVEFAERFEVSVRTIYRDVEMLSRAGVPIYMRKG 54

Query: 60 RRGGVRL 66
          R GG+ L
Sbjct: 55 RGGGISL 61


>gi|320530673|ref|ZP_08031719.1| transcriptional regulator, AraC family [Selenomonas artemidis
           F0399]
 gi|320137081|gb|EFW29017.1| transcriptional regulator, AraC family [Selenomonas artemidis
           F0399]
          Length = 255

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y +  + Y   H ++   + ++AE   IS  +L K+   
Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFAR 191


>gi|312794511|ref|YP_004027434.1| GntR family transcriptional regulator [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181651|gb|ADQ41821.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++A+   I+     ++ Q L + G+ +T RG  
Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70


>gi|297563359|ref|YP_003682333.1| GntR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847807|gb|ADH69827.1| transcriptional regulator, GntR family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 246

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VVKATEE 84
           +  IA    IS     K++  L   G+V +  GR  G  + R     +  D VV++ E 
Sbjct: 36 SVRTIAAKWKISLATATKVVGTLKAEGLVRSEPGR--GSIVTRDQAADSAKDRVVRSLEG 93

Query: 85 SF 86
            
Sbjct: 94 RI 95


>gi|222530313|ref|YP_002574195.1| GntR family transcriptional regulator [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222457160|gb|ACM61422.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++A+   I+     ++ Q L + G+ +T RG  
Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70


>gi|291298293|ref|YP_003509571.1| transcriptional regulator TrmB [Stackebrandtia nassauensis DSM
          44728]
 gi|290567513|gb|ADD40478.1| transcriptional regulator, TrmB [Stackebrandtia nassauensis DSM
          44728]
          Length = 140

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          ++Y  R L + AI +    R+ ++A+   + +  + +++  L KAG 
Sbjct: 37 SEY--RALCHLAISDGGRLRMQELADRTGLDQSSVSRLVHRLEKAGF 81


>gi|15678154|ref|NP_275269.1| inosine-5'-monophosphate dehydrogenase related protein VII
          [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621166|gb|AAB84632.1| inosine-5'-monophosphate dehydrogenase related protein VII
          [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 302

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          ++ L+    + N    +  +IA     +   +   +Q L   G+V+ V G RGG +
Sbjct: 19 LQTLINLYRNSNGKSIKGEEIAAIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 74


>gi|311744600|ref|ZP_07718399.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
 gi|311312083|gb|EFQ82001.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
          Length = 171

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T+Y   +LMY +   +   R+SQ+A    IS   L + +  L + G+V+ VR
Sbjct: 48 TEY--TILMYLSEAPETSLRMSQLANYVSISVSGLTRAVGRLEREGLVKRVR 97


>gi|259506424|ref|ZP_05749326.1| transcription regulator [Corynebacterium efficiens YS-314]
 gi|259165997|gb|EEW50551.1| transcription regulator [Corynebacterium efficiens YS-314]
          Length = 171

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   A     P  ++++ E   +S+  +   L+ + +AG++E  R
Sbjct: 100 LRILSQLAAGGCGPVSVNELTEMMGLSQPTISHHLKKMTEAGLLERTR 147


>gi|218883659|ref|YP_002428041.1| regulatory protein, MarR [Desulfurococcus kamchatkensis 1221n]
 gi|218765275|gb|ACL10674.1| regulatory protein, MarR [Desulfurococcus kamchatkensis 1221n]
          Length = 161

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++    I ++A    IS   + + L+ L + G+VE+   R G   L 
Sbjct: 12 DEKGVTIHELASRMGISPRTIKRYLRELEEKGLVES---RDGLYLLT 55


>gi|327310413|ref|YP_004337310.1| transcriptional regulator TrmB [Thermoproteus uzoniensis 768-20]
 gi|326946892|gb|AEA11998.1| transcriptional regulator, TrmB [Thermoproteus uzoniensis 768-20]
          Length = 238

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          D  I  L+        P    +IAE   +    +++ L  L   G VE V GR       
Sbjct: 15 DLAIYALLV----EKGPLTAREIAENVGVPYTKIYQHLDALEGRGFVERVEGRPARYA-A 69

Query: 68 RPADQI 73
          RP  ++
Sbjct: 70 RPPAEV 75


>gi|284029127|ref|YP_003379058.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283808420|gb|ADB30259.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 320

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R+L   A +        ++++    +S   L + +  L   G  V+T  GR G  RL 
Sbjct: 4  RMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRLT 61


>gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
           bieneusi H348]
 gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
           bieneusi H348]
          Length = 240

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +L            I  I     I   FL KIL+ L +  ++++V+G  
Sbjct: 72  ILSLLEKSGPKGLWIKDIRIKANIPYNFLVKILKKLEQEQLIKSVKGIN 120


>gi|222476151|ref|YP_002564672.1| hypothetical protein Hlac_3260 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454522|gb|ACM58786.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 205

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
           H   P  ++ IAE   +SE    K L  L   G V T  G  G     R ++ + +    
Sbjct: 46  HAYSPEPVAAIAERAHVSEKTARKHLNTLSDDGFVSTQPGDHGATLYSRSSESLVVEQAT 105

Query: 80  KATEE 84
              EE
Sbjct: 106 DILEE 110


>gi|145296508|ref|YP_001139329.1| hypothetical protein cgR_2419 [Corynebacterium glutamicum R]
 gi|140846428|dbj|BAF55427.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 164

 Score = 39.5 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +   ++  +   R+S++AE   ++   L +++  L KAG V+
Sbjct: 53 MAQISMAPERRVRMSELAELSDMTLSHLSRVVTRLEKAGWVK 94


>gi|227552401|ref|ZP_03982450.1| CBS domain transcriptional regulator [Enterococcus faecium TX1330]
 gi|257888358|ref|ZP_05668011.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,141,733]
 gi|257896752|ref|ZP_05676405.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com12]
 gi|293378067|ref|ZP_06624243.1| DRTGG domain protein [Enterococcus faecium PC4.1]
 gi|227178455|gb|EEI59427.1| CBS domain transcriptional regulator [Enterococcus faecium TX1330]
 gi|257824412|gb|EEV51344.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,141,733]
 gi|257833317|gb|EEV59738.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com12]
 gi|292643322|gb|EFF61456.1| DRTGG domain protein [Enterococcus faecium PC4.1]
          Length = 443

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
                +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18  GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131
           VV+  E                 L GS GL  VL K        +A    +T  S+  +V
Sbjct: 77  VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121

Query: 132 RNRSSIKKI 140
            NR+ ++K+
Sbjct: 122 GNRAEVQKL 130


>gi|190606488|ref|YP_001974773.1| putative replication protein [Enterococcus faecium]
 gi|190350258|emb|CAP62607.1| putative replication protein [Enterococcus faecium]
          Length = 499

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67
           +   ++ E   I +  L K+L+ L +     +    GR GG+ L 
Sbjct: 395 STKKELTERLKIPKRSLDKVLKKLREENKIHIRVRAGRNGGIMLA 439


>gi|315654739|ref|ZP_07907645.1| GntR family transcriptional regulator [Mobiluncus curtisii ATCC
          51333]
 gi|315491203|gb|EFU80822.1| GntR family transcriptional regulator [Mobiluncus curtisii ATCC
          51333]
          Length = 120

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
                  +  ++    ++   + K L  L + G+V + RG
Sbjct: 27 ARGSQIPSVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67


>gi|312876687|ref|ZP_07736667.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311796527|gb|EFR12876.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          lactoaceticus 6A]
          Length = 121

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++A+   I+     ++ Q L + G+ +T RG  
Sbjct: 28 RPGEKLPSVREMAQRFNINPNTAQRVFQELEREGLAKTERGIG 70


>gi|302524466|ref|ZP_07276808.1| predicted protein [Streptomyces sp. AA4]
 gi|302433361|gb|EFL05177.1| predicted protein [Streptomyces sp. AA4]
          Length = 247

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +     +++A    +S + + + L  L + G+VET RGR GG
Sbjct: 42 AEQLPSEAELAAQFRVSTVTVREALAVLRQQGLVETRRGRGGG 84


>gi|108760639|ref|YP_633148.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108464519|gb|ABF89704.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
          Length = 243

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          RV+     +       +++I+EA  +S   + + L  L + GI + +  G  GGVRL R 
Sbjct: 6  RVMRLLDFLRGRDGTTVAEISEALEVSARTVHRDLATLREQGIPLSSDTGPGGGVRLERD 65


>gi|304314337|ref|YP_003849484.1| transcriptional regulator [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587796|gb|ADL58171.1| predicted transcriptional regulator [Methanothermobacter
          marburgensis str. Marburg]
          Length = 293

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          ++ L+    + N    +  +IA     +   +   +Q L   G+V+ V G RGG +
Sbjct: 10 LQTLINLYRNSNGKSIKGEEIAAIMNRNPGTIRNQMQSLRSLGLVKGVPGPRGGYK 65


>gi|293571151|ref|ZP_06682189.1| CBS domain protein [Enterococcus faecium E980]
 gi|291608764|gb|EFF38048.1| CBS domain protein [Enterococcus faecium E980]
          Length = 443

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
                +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18  GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131
           VV+  E                 L GS GL  VL K        +A    +T  S+  +V
Sbjct: 77  VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121

Query: 132 RNRSSIKKI 140
            NR+ ++K+
Sbjct: 122 GNRAEVQKL 130


>gi|257899794|ref|ZP_05679447.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com15]
 gi|257837706|gb|EEV62780.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium Com15]
          Length = 443

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 26/129 (20%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
                +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18  GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131
           VV+  E                 L GS GL  VL K        +A    +T  S+  +V
Sbjct: 77  VVRIIEGDV--------------LGGSAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121

Query: 132 RNRSSIKKI 140
            NR+ ++K+
Sbjct: 122 GNRAEVQKL 130


>gi|302535002|ref|ZP_07287344.1| DeoR family transcriptional regulator [Streptomyces sp. C]
 gi|302443897|gb|EFL15713.1| DeoR family transcriptional regulator [Streptomyces sp. C]
          Length = 313

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + ++ L   G  VE   G  GG RL      P 
Sbjct: 24 SELAERLGVSPRTIRRDIERLRDLGYPVEATLGAVGGYRLVAGAAMPP 71


>gi|284047051|ref|YP_003397391.1| GntR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951272|gb|ADB54016.1| GntR domain protein [Conexibacter woesei DSM 14684]
          Length = 271

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---------VRLCRPAD 71
            D       +A A  IS   L + ++ L  AG++    G  GG         + L R   
Sbjct: 36  GDRLPSERDLAAAMQISRPTLREAVRVLADAGVLRVRPGSAGGTFVASSYVPIELLRSKS 95

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
            + + +V    E    +    A               + L +A  A  D 
Sbjct: 96  DLRLGEVAGVLEARRLIEPRVAQLAAVNAREDDFAHLARLIEAQKALLDE 145


>gi|226362775|ref|YP_002780553.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241260|dbj|BAH51608.1| putative IclR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 202

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L   A        +S +A+A  IS    F++L    + G+V+
Sbjct: 17 AVRLLRELASRPRTGATVSTLAKAVGISRPTAFRLLHSFERTGLVD 62


>gi|134099321|ref|YP_001104982.1| IclR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291007292|ref|ZP_06565265.1| IclR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133911944|emb|CAM02057.1| transcriptional regulator, IclR family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 264

 Score = 39.5 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L   A        ++ +A+A  +S    F++L  L +AG+V+
Sbjct: 18 AVRLLRELAAQPRTGATVTTLAKATGLSRPTAFRLLYSLEQAGLVD 63


>gi|298346159|ref|YP_003718846.1| GntR-family transcriptional regulator [Mobiluncus curtisii ATCC
          43063]
 gi|298236220|gb|ADI67352.1| GntR-family transcriptional regulator [Mobiluncus curtisii ATCC
          43063]
          Length = 120

 Score = 39.2 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +  ++    ++   + K L  L + G+V + RG
Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67


>gi|25028961|ref|NP_739015.1| putative transcription factor [Corynebacterium efficiens YS-314]
 gi|259508026|ref|ZP_05750926.1| MarR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
 gi|23494248|dbj|BAC19215.1| putative transcription factor [Corynebacterium efficiens YS-314]
 gi|259164367|gb|EEW48921.1| MarR family bacterial regulatory protein [Corynebacterium efficiens
           YS-314]
          Length = 173

 Score = 39.2 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            L   ++  +   R+S++AE   ++   L +++  L KAG V 
Sbjct: 62  ALAQISMAPERRLRMSELAELSDMTLSHLSRVVTRLEKAGWVR 104


>gi|288917577|ref|ZP_06411941.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
 gi|288350970|gb|EFC85183.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
          Length = 337

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          L++   H       + +A    +S   + + +  L +AG+ V +  G RGG+RL
Sbjct: 4  LLHLQSHGGA--TAADLAARFEVSVRTVRRDVAALAQAGVPVWSEPGPRGGIRL 55


>gi|108804682|ref|YP_644619.1| GntR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108765925|gb|ABG04807.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 238

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 18  AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------- 69
           ++          ++A    +S   L + L+ L  +G +E  RG  GG  + +P       
Sbjct: 32  SLKPGEKLPAEPELAAQLGVSRTALREALKVLELSGYLEIRRGYGGGTFVAKPTVEEFKV 91

Query: 70  --ADQITILDV 78
                I I +V
Sbjct: 92  ITPSTIPIAEV 102


>gi|302541739|ref|ZP_07294081.1| DeoR family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302459357|gb|EFL22450.1| DeoR family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 341

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +++    H   P   + +AE   +S   + + ++ L  AG+ V TVRG  GG+ L
Sbjct: 7  LSIMLLLQTHGQLP--AATLAERLEVSVRTVMRDVEALSAAGVPVYTVRGPHGGIAL 61


>gi|291520570|emb|CBK75791.1| Biotin-(acetyl-CoA carboxylase) ligase [Butyrivibrio fibrisolvens
          16/4]
          Length = 264

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          +VL Y   + +       IA    +S   ++K +  L KAG  ++ V     G +L    
Sbjct: 6  KVLEYLESNKETYISGEAIASNLGLSRNAIWKAINELRKAGYAIDAV--SNKGYKLADNN 63

Query: 71 DQITILDVVKATEESF 86
          D ++   ++   ++S 
Sbjct: 64 DILSAAGIISYLDDSL 79


>gi|239939448|ref|ZP_04691385.1| GntR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239985935|ref|ZP_04706599.1| GntR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 265

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71
                +      ++++   IS + L ++L+ L    +VE+ RGR GG   L R A 
Sbjct: 62  LVPPGERLPSERELSQHLRISRVTLREVLKVLQDQNMVESRRGRYGGTFVLPRTAA 117


>gi|315657337|ref|ZP_07910219.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315491809|gb|EFU81418.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 120

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +  ++    ++   + K L  L + G+V + RG
Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67


>gi|312199725|ref|YP_004019786.1| GntR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231061|gb|ADP83916.1| transcriptional regulator, GntR family with aminotransferase
          domain [Frankia sp. EuI1c]
          Length = 446

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          R++M  A+        + ++A    IS   + +  + L +AG V   RGR G   L  PA
Sbjct: 23 RLVMAGALPAGTRLPTVRELATELGISPTTVSQAWRTLARAG-VIAPRGRAGTFVLAGPA 81

Query: 71 D 71
           
Sbjct: 82 A 82


>gi|271966713|ref|YP_003340909.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509888|gb|ACZ88166.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 332

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++A+   ++   + + ++ L   G  V   +G  GG +L 
Sbjct: 14 RVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDVERLRTLGYPVHASQGVGGGYQLG 71


>gi|284034819|ref|YP_003384750.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283814112|gb|ADB35951.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 322

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   + + +  L   G  V   +G  GG RL
Sbjct: 26 LAERLEVSPRTVRRDVDRLRDLGYPVRASKGPDGGYRL 63


>gi|239941508|ref|ZP_04693445.1| IclR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239987972|ref|ZP_04708636.1| IclR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
          Length = 250

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y +RVL   + H +     +QI+    +    L  +L  L + G VE
Sbjct: 14 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYVE 59


>gi|304390081|ref|ZP_07372035.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326563|gb|EFL93807.1| GntR family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 120

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +  ++    ++   + K L  L + G+V + RG
Sbjct: 34 SVRDLSAEYGVNPNTMQKALTELERTGLVASRRG 67


>gi|291442878|ref|ZP_06582268.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291345825|gb|EFE72729.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 232

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPAD 71
               +      ++++   IS + L ++L+ L    +VE+ RGR GG   L R A 
Sbjct: 29 LVPPGERLPSERELSQHLRISRVTLREVLKVLQDQNMVESRRGRYGGTFVLPRTAA 84


>gi|99078650|ref|YP_611908.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035788|gb|ABF62646.1| transcriptional regulator, AsnC family [Ruegeria sp. TM1040]
          Length = 152

 Score = 39.2 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 32/141 (22%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L  R     R+L       D     + +AE+  +S   L++ ++ L +AG+++    R
Sbjct: 1   MRLDDRDR---RILTLL--QEDSRMSNADLAESVGMSASALWRRVRSLEEAGVIK----R 51

Query: 61  RGGVR----------------LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
            G V                 L R A +  + + ++A E +  V EC+A+          
Sbjct: 52  YGAVVVPQAMGLNFEALVQVNLTRHAPE-HLQEFIRAVEGNPHVVECYATTG-----QAD 105

Query: 105 CGLTSVLRKALNAFFDVLTQY 125
             L  +L   L A+   L Q+
Sbjct: 106 YHLR-ILAPDLEAYNQFLEQF 125


>gi|300786223|ref|YP_003766514.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299795737|gb|ADJ46112.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 158

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          TDYG+  L+  +       RIS +A    +S   + +++  L + G+VE  R
Sbjct: 42 TDYGV--LVALSEAPGRLLRISALAATTGLSLSRISRVVDDLTRRGLVEKRR 91


>gi|239932175|ref|ZP_04689128.1| DeoR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 133

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +AE   +S   + + ++ L   G  V+   G  GG RL   A+
Sbjct: 22 SGADLAERLGVSPRTVRRDVERLRGLGYPVDASPGTGGGYRLGAGAE 68


>gi|69245236|ref|ZP_00603314.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium DO]
 gi|257880121|ref|ZP_05659774.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,230,933]
 gi|257882353|ref|ZP_05662006.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,502]
 gi|257885550|ref|ZP_05665203.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,501]
 gi|257891212|ref|ZP_05670865.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,410]
 gi|257894024|ref|ZP_05673677.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,408]
 gi|258614545|ref|ZP_05712315.1| CBS domain-containing protein [Enterococcus faecium DO]
 gi|260560270|ref|ZP_05832446.1| thioesterase superfamily protein [Enterococcus faecium C68]
 gi|261208206|ref|ZP_05922879.1| thioesterase superfamily protein [Enterococcus faecium TC 6]
 gi|289566578|ref|ZP_06446999.1| CBS domain-containing protein [Enterococcus faecium D344SRF]
 gi|293552927|ref|ZP_06673582.1| CBS domain protein [Enterococcus faecium E1039]
 gi|293560636|ref|ZP_06677123.1| CBS domain protein [Enterococcus faecium E1162]
 gi|293570170|ref|ZP_06681248.1| CBS domain protein [Enterococcus faecium E1071]
 gi|294615820|ref|ZP_06695663.1| CBS domain protein [Enterococcus faecium E1636]
 gi|294617809|ref|ZP_06697421.1| CBS domain protein [Enterococcus faecium E1679]
 gi|294623457|ref|ZP_06702309.1| CBS domain protein [Enterococcus faecium U0317]
 gi|314940202|ref|ZP_07847375.1| DRTGG domain protein [Enterococcus faecium TX0133a04]
 gi|314941740|ref|ZP_07848619.1| DRTGG domain protein [Enterococcus faecium TX0133C]
 gi|314947616|ref|ZP_07851025.1| DRTGG domain protein [Enterococcus faecium TX0082]
 gi|314950602|ref|ZP_07853682.1| DRTGG domain protein [Enterococcus faecium TX0133A]
 gi|314992531|ref|ZP_07857952.1| DRTGG domain protein [Enterococcus faecium TX0133B]
 gi|314995314|ref|ZP_07860423.1| DRTGG domain protein [Enterococcus faecium TX0133a01]
 gi|68195911|gb|EAN10345.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium DO]
 gi|257814349|gb|EEV43107.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,230,933]
 gi|257818011|gb|EEV45339.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,502]
 gi|257821406|gb|EEV48536.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,501]
 gi|257827572|gb|EEV54198.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,410]
 gi|257830403|gb|EEV57010.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecium 1,231,408]
 gi|260073615|gb|EEW61941.1| thioesterase superfamily protein [Enterococcus faecium C68]
 gi|260077463|gb|EEW65181.1| thioesterase superfamily protein [Enterococcus faecium TC 6]
 gi|289161623|gb|EFD09502.1| CBS domain-containing protein [Enterococcus faecium D344SRF]
 gi|291587319|gb|EFF19205.1| CBS domain protein [Enterococcus faecium E1071]
 gi|291591310|gb|EFF22976.1| CBS domain protein [Enterococcus faecium E1636]
 gi|291595920|gb|EFF27201.1| CBS domain protein [Enterococcus faecium E1679]
 gi|291597130|gb|EFF28329.1| CBS domain protein [Enterococcus faecium U0317]
 gi|291602903|gb|EFF33100.1| CBS domain protein [Enterococcus faecium E1039]
 gi|291605387|gb|EFF34834.1| CBS domain protein [Enterococcus faecium E1162]
 gi|313590471|gb|EFR69316.1| DRTGG domain protein [Enterococcus faecium TX0133a01]
 gi|313592991|gb|EFR71836.1| DRTGG domain protein [Enterococcus faecium TX0133B]
 gi|313597149|gb|EFR75994.1| DRTGG domain protein [Enterococcus faecium TX0133A]
 gi|313599512|gb|EFR78355.1| DRTGG domain protein [Enterococcus faecium TX0133C]
 gi|313640522|gb|EFS05102.1| DRTGG domain protein [Enterococcus faecium TX0133a04]
 gi|313645857|gb|EFS10437.1| DRTGG domain protein [Enterococcus faecium TX0082]
          Length = 443

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 26/129 (20%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
                +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18  GNRISVRSIAKELNVSEGTAYRAIKDAENVGLVSTIQ-RVGTIRIERKLKKHIERLTFGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131
           VV+  E                 L G+ GL  VL K        +A    +T  S+  +V
Sbjct: 77  VVRIIEGDV--------------LGGAAGLDKVLNKFVIGAMTKHAMERYITPGSL-MIV 121

Query: 132 RNRSSIKKI 140
            NR+ ++K+
Sbjct: 122 GNRAEVQKL 130


>gi|325830384|ref|ZP_08163841.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
 gi|325487851|gb|EGC90289.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
          Length = 148

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    +  +A    I+   + K+   L   G VE+VRGR 
Sbjct: 32 QPGDQLPSVRTLAAEAAINYNTVSKVYINLEHDGYVESVRGRG 74


>gi|187925666|ref|YP_001897308.1| hypothetical protein Bphyt_3694 [Burkholderia phytofirmans PsJN]
 gi|187716860|gb|ACD18084.1| Helix-turn-helix type 11 domain protein [Burkholderia
          phytofirmans PsJN]
          Length = 321

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 10 GIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            R+L +   +          +A+ C +S   +++ +  L  AG+ V + RG  GG RL
Sbjct: 3  ASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRL 61


>gi|119717964|ref|YP_924929.1| ArsR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119538625|gb|ABL83242.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614]
          Length = 116

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRL 66
           +R+L   A H +    I  + E   +S+  +   ++ LV AG+V    RGR    RL
Sbjct: 46  LRLLSMIAAHPEREACICDLIEPVGLSQPTVSHHMKQLVDAGLVTREQRGRWAFYRL 102


>gi|332669751|ref|YP_004452759.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338789|gb|AEE45372.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC
          484]
          Length = 323

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   +S   + + +  L   G  V   +G  GG RL
Sbjct: 26 LADRLGVSPRTVRRDVDRLRDLGYPVRATKGPDGGYRL 63


>gi|323483645|ref|ZP_08089029.1| LysR family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323692609|ref|ZP_08106841.1| hypothetical protein HMPREF9475_01704 [Clostridium symbiosum
          WAL-14673]
 gi|323403072|gb|EGA95386.1| LysR family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323503306|gb|EGB19136.1| hypothetical protein HMPREF9475_01704 [Clostridium symbiosum
          WAL-14673]
          Length = 312

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKA-GIVETVRGRRGGVRLCRPADQ--ITILDVV 79
              I++ A++  IS+ +L KI++ L  A G V   R  RGGV L    +   I   +++
Sbjct: 18 RLGSINKAAQSLFISQPYLGKIIKELENAVGAVLFQR-TRGGVSLTPDGEDFMIHAENII 76

Query: 80 KATE 83
          +  E
Sbjct: 77 REVE 80


>gi|304314072|ref|YP_003849219.1| phosphate transport system regulator [Methanothermobacter
          marburgensis str. Marburg]
 gi|302587531|gb|ADL57906.1| predicted phosphate transport system regulator
          [Methanothermobacter marburgensis str. Marburg]
          Length = 303

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P+   +IAE   I+  ++ K+LQPL+K G+V 
Sbjct: 20 ENPSTQDEIAERLGITRRYVTKLLQPLIKEGVVR 53


>gi|83644372|ref|YP_432807.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396]
 gi|83632415|gb|ABC28382.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396]
          Length = 455

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDV 78
                  IS + +   +    + +I+  L+K G V  + G      +  RP D+IT+ ++
Sbjct: 334 QQGGGESISDLEDTLSVGPETIQRIIDKLLKKG-VLAIMGDEADSLIPARPLDRITLAEL 392

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           +               H +   L     + ++ +    A    L Q ++   VR   ++
Sbjct: 393 MHVLRSP--------EHSLPASLYSDKSVDAIAKGVTAAMEASLGQMTLAAWVRGEETV 443


>gi|331700323|ref|YP_004336562.1| helix-turn-helix, type 11 [Pseudonocardia dioxanivorans CB1190]
 gi|326955012|gb|AEA28709.1| helix-turn-helix, type 11 [Pseudonocardia dioxanivorans CB1190]
          Length = 318

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            RVL    +    P     ++A+   +    + + ++ L + G+ V   RGR GG RL
Sbjct: 5  ASRVLALLELLQARPGITGPELAQRLDVDARTVRRHVRTLEELGVPVVASRGRYGGYRL 63


>gi|317489632|ref|ZP_07948136.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911226|gb|EFV32831.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
          Length = 148

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    +  +A    I+   + K+   L   G VE+VRGR 
Sbjct: 32 QPGDQLPSVRTLAAEAAINYNTVSKVYINLEHDGYVESVRGRG 74


>gi|255523133|ref|ZP_05390105.1| transcriptional regulator, DeoR family [Clostridium
          carboxidivorans P7]
 gi|255513248|gb|EET89516.1| transcriptional regulator, DeoR family [Clostridium
          carboxidivorans P7]
          Length = 253

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          ++ +   ++ +++E   +SE  + K LQ L + G    ++   GG  L R
Sbjct: 14 LNENGRVKVKELSERFNVSEGMVRKDLQRLERDG---AIQRTYGGAILSR 60


>gi|19553711|ref|NP_601713.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62391351|ref|YP_226753.1| MarR family regulatory protein [Corynebacterium glutamicum ATCC
          13032]
 gi|21325282|dbj|BAB99904.1| Transcriptional regulators [Corynebacterium glutamicum ATCC
          13032]
 gi|41326692|emb|CAF21174.1| Bacterial regulatory protein, MarR family [Corynebacterium
          glutamicum ATCC 13032]
          Length = 164

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +   ++  ++  R+S++AE   ++   L +++  L KAG V+
Sbjct: 53 MAQISMAPEHRVRMSELAELSDMTLSHLSRVVTRLEKAGWVK 94


>gi|88856946|ref|ZP_01131597.1| GntR family transcriptional regulator [marine actinobacterium
           PHSC20C1]
 gi|88813822|gb|EAR23693.1| GntR family transcriptional regulator [marine actinobacterium
           PHSC20C1]
          Length = 258

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--ITILDV 78
            D      ++ E   +S   + + L  L   G V+   GR GG  + RP  +   TILDV
Sbjct: 48  GDRLPTERELIEQLGVSRATVREALMLLESDGFVQMRAGRHGGAYVTRPKIERLATILDV 107

Query: 79  VKATE 83
           + + E
Sbjct: 108 ILSVE 112


>gi|297162155|gb|ADI11867.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 346

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +AE   +S   + + +  L + G  +  V+G  GG RL 
Sbjct: 26 LAERLEVSPRTVRRDVDRLRELGYPILAVKGPDGGYRLG 64


>gi|271966560|ref|YP_003340756.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509735|gb|ACZ88013.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 337

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   IS   + + +  L + G  +   +G  GG RL
Sbjct: 26 LAERLDISPRTVRRDVDRLRELGYPIVAFKGPDGGYRL 63


>gi|152965599|ref|YP_001361383.1| GntR family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151360116|gb|ABS03119.1| regulatory protein GntR HTH [Kineococcus radiotolerans SRS30216]
          Length = 251

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +A    +S   L + L  L  AG VE  RGR GG
Sbjct: 62 RDLATRLGVSRATLREALAALHAAGWVEVRRGRSGG 97


>gi|116334317|ref|YP_795844.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
 gi|116099664|gb|ABJ64813.1| transcriptional regulator, ArsR family [Lactobacillus brevis ATCC
          367]
          Length = 296

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+      + ++      ++ P  + ++A+   +S   + K L  L  A +V + R
Sbjct: 16 LSSEVR--LHIIRLI---SEKPMSVKELAQELGLSSAIVTKHLDKLAAAELVTSKR 66


>gi|197121885|ref|YP_002133836.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. K]
 gi|196171734|gb|ACG72707.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp. K]
          Length = 330

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL + A   D       I++   ++   ++K +  L   G  ++ V  R  G RL    D
Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69

Query: 72 QIT------------ILDVVKATEE 84
          ++T            +  V+ A EE
Sbjct: 70 RLTALELRPLLNTHDLGQVLHAYEE 94


>gi|89093966|ref|ZP_01166911.1| transcriptional regulator, GntR family protein [Oceanospirillum
          sp. MED92]
 gi|89081852|gb|EAR61079.1| transcriptional regulator, GntR family protein [Oceanospirillum
          sp. MED92]
          Length = 244

 Score = 39.2 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +D      ++A+   +S   + + L+ L    ++ + RG  GG
Sbjct: 33 DDRLPTEDELAKRFQVSRPTIREALKRLAAKNLIRSRRGPTGG 75


>gi|291444952|ref|ZP_06584342.1| IclR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291347899|gb|EFE74803.1| IclR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 252

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y +RVL   + H +     +QI+    +    L  +L  L + G VE
Sbjct: 16 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYVE 61


>gi|297193524|ref|ZP_06910922.1| GntR-family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197718202|gb|EDY62110.1| GntR-family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 132

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  +      D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 17 QIVQQTRQALR--LGLLEPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 72


>gi|16801302|ref|NP_471570.1| hypothetical protein lin2237 [Listeria innocua Clip11262]
 gi|16414750|emb|CAC97466.1| lin2237 [Listeria innocua Clip11262]
          Length = 233

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           L    DYG+RV    A+          +A+    S+ +  K+L  L + GI+E+ +
Sbjct: 155 LNTMIDYGLRV-SEKAVELPKFLTYQILADNSNTSKSYTSKVLSNLREKGILESQK 209


>gi|325002721|ref|ZP_08123833.1| iron dependent repressor [Pseudonocardia sp. P1]
          Length = 226

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++ +   A   +    +S +AE   +S      +++ LV+AG+V+  R    G+ L    
Sbjct: 5  LKTIFLLAERWEGSVGVSALAERLGVSSPSASGMVRKLVEAGLVDHAR--YAGITLTPSG 62

Query: 71 DQITILDVVK 80
           + + L VV+
Sbjct: 63 RE-SALAVVR 71


>gi|89894887|ref|YP_518374.1| hypothetical protein DSY2141 [Desulfitobacterium hafniense Y51]
 gi|89334335|dbj|BAE83930.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 337

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +P    Q+AE   +SE  + K L+ L +AG+V + R
Sbjct: 271 HPYCTQQLAEMYNLSEATVSKHLKILSRAGLVYSQR 306


>gi|146308325|ref|YP_001188790.1| GntR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576526|gb|ABP86058.1| transcriptional regulator, GntR family [Pseudomonas mendocina ymp]
          Length = 251

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             +     S I E   +S   + + L  L  AG+VET  G            G R+    
Sbjct: 36  RGEKLPTESAIMEEQGVSRTVVREALSRLQAAGLVETRHGIGTFVLDTPSASGFRI--DP 93

Query: 71  DQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
             I T+ D++   E    +     S  +         L ++ R+AL+A  + 
Sbjct: 94  ATIVTLRDILAILELRISLE--VESAGMAAQRRSEAQLKAI-REALDAINES 142


>gi|329903089|ref|ZP_08273363.1| Transcriptional regulator, GntR family [Oxalobacteraceae
          bacterium IMCC9480]
 gi|327548498|gb|EGF33167.1| Transcriptional regulator, GntR family [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 211

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 5  KRTDYG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          + + Y  +R  ++ CA+      R +++A    +S+  +   L  L + G+V +    R 
Sbjct: 2  RESAYAQLRADILSCALPPGAEIREAELAARFQVSKSPVRDALMRLEREGLVIST--PRQ 59

Query: 63 GVRLCRPADQITILDV 78
          G R+      I++ DV
Sbjct: 60 GYRVAP----ISVTDV 71


>gi|315222688|ref|ZP_07864577.1| DeoR-like helix-turn-helix protein [Streptococcus anginosus
          F0211]
 gi|315188374|gb|EFU22100.1| DeoR-like helix-turn-helix protein [Streptococcus anginosus
          F0211]
          Length = 299

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
              ++AE   +S   +++ +  L  AGI + T++GR GG+RL   
Sbjct: 19 VTAKELAEQFEVSVRTIYRDVDRLSSAGIPIYTMQGRDGGIRLTED 64


>gi|117929059|ref|YP_873610.1| GntR family transcriptional regulator [Acidothermus
          cellulolyticus 11B]
 gi|117649522|gb|ABK53624.1| transcriptional regulator, GntR family [Acidothermus
          cellulolyticus 11B]
          Length = 252

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +      ++A    +S   L + +  L +AG++E  RGR GG
Sbjct: 52 GERLPPERELAARLRVSRATLREAIGALREAGMIEVHRGRGGG 94


>gi|332361889|gb|EGJ39692.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK355]
          Length = 311

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          L       D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 7  LFDILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|297538320|ref|YP_003674089.1| transcriptional regulator, DeoR family [Methylotenera sp. 301]
 gi|297257667|gb|ADI29512.1| transcriptional regulator, DeoR family [Methylotenera sp. 301]
          Length = 260

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          ++   +H     R  Q+AE   +SE+ L +    L K G++   R   GG  L
Sbjct: 12 MITAVLHARGECRTRQLAEQFNLSEMTLRRDFHTLEKRGLL---RRVHGGAVL 61


>gi|218533385|ref|YP_002424200.1| hypothetical protein Mchl_5534 [Methylobacterium chloromethanicum
          CM4]
 gi|218525688|gb|ACK86272.1| Helix-turn-helix type 11 domain protein [Methylobacterium
          chloromethanicum CM4]
          Length = 239

 Score = 39.2 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66
          A+  +  + ++++AE    S   + + +  L  AG ++ +  GR GG+RL
Sbjct: 13 ALRRNGTSTVAELAEQIGASRRTVLRDIGALRDAGHVIHSDVGRGGGLRL 62


>gi|307325855|ref|ZP_07605055.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306888643|gb|EFN19629.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 347

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +AE   +S   + + +  L + G  +  ++G  GG RL 
Sbjct: 36 LAERLEVSPRTVRRDVDRLRELGYPIAAIKGPDGGYRLG 74


>gi|145589725|ref|YP_001156322.1| GntR family transcriptional regulator [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048131|gb|ABP34758.1| transcriptional regulator, GntR family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 221

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 2  HLTKRTDY--GI-RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           L  RTDY   + + L+      ++         +IAE   +S L + + L+ L   G V
Sbjct: 7  KLPARTDYVEAVYKALLDAISDGSLPPGTRITQEEIAEQMNVSRLPVLQALRMLKNDGFV 66

Query: 55 ETVRGRR 61
          E   GR 
Sbjct: 67 EDAPGRG 73


>gi|300781149|ref|ZP_07091003.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030]
 gi|300532856|gb|EFK53917.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----- 55
          M +T+ TD   R L+  A+    P  ++++AE   I+   + + L  L+  G+ E     
Sbjct: 1  MAVTRSTDGETRRLIMSAMLTSRPVTVAELAEKVGITPAGVRRHLDKLLAEGLAELAEAD 60

Query: 56 ----TVRGRRGG-VRLCRPADQ 72
                RGR     +L R   +
Sbjct: 61 TAGPATRGRPAKYYQLTRDGRE 82


>gi|226312088|ref|YP_002771982.1| BirA bifunctional protein [Brevibacillus brevis NBRC 100599]
 gi|226095036|dbj|BAH43478.1| BirA bifunctional protein [Brevibacillus brevis NBRC 100599]
          Length = 327

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                   ++++ C  S   ++K ++ L + G  VE VR  + G RL    D+++  ++
Sbjct: 14 QPGSFISGEELSQTCGCSRTAVWKHIEELRRDGYEVEAVR--KSGYRLLVAPDRLSAAEI 71

Query: 79 VKATE 83
          +   E
Sbjct: 72 MAGLE 76


>gi|254390482|ref|ZP_05005698.1| helix-turn-helix domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704185|gb|EDY49997.1| helix-turn-helix domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
          Length = 336

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +        ++++    +SE    + L  L  AG+ V +V+GR GG RL
Sbjct: 19 ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 71


>gi|29830235|ref|NP_824869.1| DeoR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29607346|dbj|BAC71404.1| putative DeoR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 330

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++++   +S   + + +  L + G  V+  +G  GG RL      P 
Sbjct: 26 ELSDRLGVSRRTVRRDIDRLRELGYPVQATKGSDGGYRLVAGKAMPP 72


>gi|332977033|gb|EGK13842.1| transcriptional regulator [Desmospora sp. 8437]
          Length = 325

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +L+   IH         ++E   +S+  + + ++ L  AG+ V   RG  GG RL
Sbjct: 9  ILLLLQIHG--RMTAKSLSERLEVSQRTIHRDMEALSAAGVPVVAERGAGGGWRL 61


>gi|120402033|ref|YP_951862.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
 gi|119954851|gb|ABM11856.1| transcriptional regulator, IclR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 266

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 5  KRTDYGIRV---LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++    +R    L Y A   D P R+ +I++A  +       +L+ LV  G V +
Sbjct: 9  RKVKSAVRTVELLEYLAARPDDPARLREISDALDMPRSSAHALLRTLVCQGWVRS 63


>gi|89067712|ref|ZP_01155166.1| putative transcriptional regulator [Oceanicola granulosus
          HTCC2516]
 gi|89046682|gb|EAR52737.1| putative transcriptional regulator [Oceanicola granulosus
          HTCC2516]
          Length = 268

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          I  +         P  + ++A    + +  LF++LQ LV+ G V  + G+ G   L 
Sbjct: 40 IEAMADL----GEPAPLREVARVTGLPKGTLFRVLQTLVQLGYVNQI-GKTGSYHLS 91


>gi|228996205|ref|ZP_04155852.1| Xylan 1,4-beta-xylosidase [Bacillus mycoides Rock3-17]
 gi|228763523|gb|EEM12423.1| Xylan 1,4-beta-xylosidase [Bacillus mycoides Rock3-17]
          Length = 768

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58
           +R++ Y   H   P  +  IAE   +S  +L K       L     + ++R
Sbjct: 105 LRIITYIEDHYKEPITLQAIAEREFLSIPYLSKFFSDNIGLNFQSYLTSIR 155


>gi|323703327|ref|ZP_08114977.1| putative signal transduction protein with CBS domains
          [Desulfotomaculum nigrificans DSM 574]
 gi|323531690|gb|EGB21579.1| putative signal transduction protein with CBS domains
          [Desulfotomaculum nigrificans DSM 574]
          Length = 211

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-- 58
          M L+KR +     ++   +  + P    QIAE   ++   L   L  L  AG++E     
Sbjct: 1  MELSKRQE----AILEI-VKKNGPITGEQIAEQLNLTRATLRPDLSILTMAGLLEARPRV 55

Query: 59 -----GRRGGVRLCRPADQITILDV 78
               G+     L     +I + DV
Sbjct: 56 GYFYSGKTADRVLADKITRIKVGDV 80


>gi|294816758|ref|ZP_06775400.1| Putative DeoR-family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|294321573|gb|EFG03708.1| Putative DeoR-family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
          Length = 350

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +        ++++    +SE    + L  L  AG+ V +V+GR GG RL
Sbjct: 33 ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 85


>gi|114764332|ref|ZP_01443560.1| transcriptional regulator, GntR family protein [Pelagibaca
          bermudensis HTCC2601]
 gi|114543280|gb|EAU46297.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          HTCC2601]
          Length = 249

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           D     +++AE   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 GDRLPSEAELAEQYGVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|13541208|ref|NP_110896.1| transcription regulator [Thermoplasma volcanium GSS1]
 gi|14324596|dbj|BAB59523.1| leucine-responsive regulatory protein [Lrp] [Thermoplasma
          volcanium GSS1]
          Length = 175

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R L+      D  + + +I+E   I    + KI++ L + GI++
Sbjct: 16 LRELID-----DSRSSVEEISERTGIGRNTVSKIIKDLERNGIIK 55


>gi|169629651|ref|YP_001703300.1| ArsR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169241618|emb|CAM62646.1| Putative transcriptional regulator, ArsR family [Mycobacterium
          abscessus]
          Length = 119

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++++       D       +AE   ++E  +   +  L +AG+VE+ R
Sbjct: 45 VKIMSELFGAPDGEVISGDLAELLGLTESTVSHHMNQLRRAGLVESDR 92


>gi|19704584|ref|NP_604146.1| DeoR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296327695|ref|ZP_06870236.1| DeoR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
 gi|19714876|gb|AAL95445.1| Transcriptional regulator, DeoR family [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296155181|gb|EFG95957.1| DeoR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
          Length = 314

 Score = 39.2 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y         R +Q+A+   +S   +++ +  L  AGI + T +G+ GG+ + + 
Sbjct: 22 FRILYYI--LEKGKVRANQLADRFEVSVRTIYRDIDSLSSAGIPIYTTQGKGGGIEIAKD 79


>gi|320010220|gb|ADW05070.1| regulatory protein DeoR [Streptomyces flavogriseus ATCC 33331]
          Length = 344

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +AE   I+   + + +  L + G  +   +G  GG RL
Sbjct: 30 DLAERLDITPRTVRRDIDRLRELGYPIRAFKGPSGGYRL 68


>gi|75762096|ref|ZP_00742001.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74490414|gb|EAO53725.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 320

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 2  HLTKRTDYGIRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          HL+K     IR+L +             +IA+   IS   + + +  L   G+ +   +G
Sbjct: 3  HLSK----AIRLLDILIFASAKEAFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQG 58

Query: 60 RRGGVR 65
          R GG +
Sbjct: 59 RNGGYK 64


>gi|332668950|ref|YP_004451958.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484]
 gi|332337988|gb|AEE44571.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484]
          Length = 315

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            +        +++A    +SE    + L  L  AG+ V +V+GR GG RL
Sbjct: 11 LLLQQRRQVTAAEVARELEVSERTARRDLDALATAGVPVYSVQGRGGGWRL 61


>gi|302552118|ref|ZP_07304460.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302469736|gb|EFL32829.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 363

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT          M    H    P   S++A     SE  + + L+ L +AG+V + R
Sbjct: 284 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRALRTLREAGLVRSAR 336


>gi|158424068|ref|YP_001525360.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330957|dbj|BAF88442.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +         +IA    +S   + +  + L  +G+VE +RGR+G               V
Sbjct: 48  LEPGSRLDEQEIAARYGVSRTPVREAFRLLAASGLVE-LRGRQG--------------AV 92

Query: 79  VKATEES--FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY-SIECL 130
           V++        + +  A  +  C  + +  +T      L A  + L Q  +++ +
Sbjct: 93  VRSIGAHALIEMFQVMAEMEGLCARLAARRITPAQMDKLRAIHEKLEQVATLKDI 147


>gi|86158810|ref|YP_465595.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85775321|gb|ABC82158.1| Biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 330

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL + A   D       I++   ++   ++K +  L   G  ++ V  R  G RL    D
Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69

Query: 72 QITILDV 78
          ++T L++
Sbjct: 70 RLTALEL 76


>gi|311106752|ref|YP_003979605.1| transcriptional regulator family protein 20 [Achromobacter
          xylosoxidans A8]
 gi|310761441|gb|ADP16890.1| bacterial transcriptional regulator family protein 20
          [Achromobacter xylosoxidans A8]
          Length = 277

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           + VL + A    +P  ++Q+A+   + +  L ++L  + +AG V   
Sbjct: 31 ALVVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGYVAAT 77


>gi|307323628|ref|ZP_07602838.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
          4113]
 gi|306891117|gb|EFN22093.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
          4113]
          Length = 101

 Score = 39.2 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67
             +  AI  D+  R+  IA  C ++E  + KI+  L + G +  VR GR    R+    
Sbjct: 4  HARVLIAIFEDHTIRVRDIAARCQLTERAVQKIIADLEEGGYLTHVRQGRSNVYRIAPDT 63

Query: 68 --RPADQI--TILDVVKAT 82
            R    +  T+ D++   
Sbjct: 64 PLRHPADVGATVADLLSLL 82


>gi|323358032|ref|YP_004224428.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274403|dbj|BAJ74548.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 331

 Score = 38.8 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
             D+P  +  +A    IS+  + + +  L + G  +E+  G  GG RL
Sbjct: 19 ARRDWPGSV--LASRLGISDRTVRRDIDRLREMGYRIESTMGPDGGYRL 65


>gi|19552097|ref|NP_600099.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62389760|ref|YP_225162.1| regulatory protein, arsR fam [Corynebacterium glutamicum ATCC
          13032]
 gi|145295041|ref|YP_001137862.1| hypothetical protein cgR_0985 [Corynebacterium glutamicum R]
 gi|21323637|dbj|BAB98264.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325095|emb|CAF19576.1| Bacterial regulatory protein, arsR fam [Corynebacterium
          glutamicum ATCC 13032]
 gi|140844961|dbj|BAF53960.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 104

 Score = 38.8 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          Y IR L   A +N+    + QI +   +    + + L+ L K G+V + R
Sbjct: 24 YRIRALEIIATNNE--VSVGQITKEMDLEASHVSQHLKVLRKFGLVSSQR 71


>gi|145224639|ref|YP_001135317.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK]
 gi|315444971|ref|YP_004077850.1| ArsR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145217125|gb|ABP46529.1| transcriptional regulator, ArsR family [Mycobacterium gilvum
          PYR-GCK]
 gi|315263274|gb|ADU00016.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
          Length = 114

 Score = 38.8 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          R+ +   +H      +S +A A   SE  + + L+ L + G V + R GR    RL
Sbjct: 42 RLEILLCLHRAPGICVSDLAAALGRSENTVSQALRVLRQQGWVTSTRAGRSVTYRL 97


>gi|329119608|ref|ZP_08248289.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464205|gb|EGF10509.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
          Length = 151

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPA 70
             LM   + ++    +S++A+   IS+  L   L  L  A +V+  R  R    RL    
Sbjct: 46  HRLMLLCLLSEGQRSVSELADILGISQTTLSNHLTKLRDAKLVDYNRYHRILEYRLA-AP 104

Query: 71  DQITILDVV 79
           +  TILDV+
Sbjct: 105 EAQTILDVL 113


>gi|269793583|ref|YP_003313038.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269095768|gb|ACZ20204.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 327

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   IS   + + +  L + G  ++   G  GG RL
Sbjct: 25 LAERLGISHRTVRRDVDRLREMGYSIQATMGPDGGYRL 62


>gi|240169428|ref|ZP_04748087.1| putative transcriptional regulatory protein [Mycobacterium
          kansasii ATCC 12478]
          Length = 257

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL--- 66
             +L     H    +++ +I E   ++   + +IL  L   G+V + RG RG  RL   
Sbjct: 21 AAEILRVLQAHPGGLSQV-EIGERVGMARSTVSRILNALEDEGLVAS-RGVRGPYRLGPE 78

Query: 67 -CRPADQITI 75
            R A  + +
Sbjct: 79 IARMASTVRL 88


>gi|239981033|ref|ZP_04703557.1| DeoR family transcriptional regulator [Streptomyces albus J1074]
 gi|291452898|ref|ZP_06592288.1| DeoR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291355847|gb|EFE82749.1| DeoR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 347

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +AE   +S   + + +  L + G  +  ++G  GG RL 
Sbjct: 26 LAERLDVSPRTVRRDIDRLRELGYPIAALKGPDGGYRLG 64


>gi|119872239|ref|YP_930246.1| transcriptional regulator, TrmB [Pyrobaculum islandicum DSM 4184]
 gi|119673647|gb|ABL87903.1| transcriptional regulator, TrmB [Pyrobaculum islandicum DSM 4184]
          Length = 117

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70
           + ++   +        S+IA    + +  + K L+ L +AG VE   RGR   V L R  
Sbjct: 52  KAILRLLVERQGAVYQSEIARELGLPKSTVHKALRRLSEAGYVEIQRRGRFNLVVLKRVT 111

Query: 71  DQITI 75
            ++++
Sbjct: 112 SEVSV 116


>gi|328883954|emb|CCA57193.1| Transcriptional regulator, GntR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 138

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  M      D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 27 QIVQQTKQALR--MGLLEPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 82


>gi|268608907|ref|ZP_06142634.1| biotin/acetyl-CoA-carboxylase ligase [Ruminococcus flavefaciens
          FD-1]
          Length = 327

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITI 75
           A  +      + IAE   +S   ++K ++ L   G V E+V  +  G RL   +++I+ 
Sbjct: 11 LAEADGGYISGAAIAEKLGVSRNAVWKTVKALEADGFVIESVTSK--GYRLSADSNRIS- 67

Query: 76 LDVV 79
           D++
Sbjct: 68 ADLI 71


>gi|55376149|ref|YP_134005.1| hypothetical protein pNG2005 [Haloarcula marismortui ATCC 43049]
 gi|55228874|gb|AAV44299.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 107

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          R+L + A ++D     ++I EA  I    +  +L  L   G+V   RGR
Sbjct: 26 RILTFLAANDDQAFTQTEIYEATDIPRGSVGVVLSRLEDRGLVR-HRGR 73


>gi|21221635|ref|NP_627414.1| DeoR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|7799520|emb|CAB90984.1| putative deoR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
          Length = 323

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72


>gi|21220658|ref|NP_626437.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|256788196|ref|ZP_05526627.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289772091|ref|ZP_06531469.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|5578866|emb|CAB51268.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289702290|gb|EFD69719.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 327

 Score = 38.8 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPTMTAAELARELEVSERTVTRDAQALSEAGVPVYAERGRAGGYRL 61


>gi|332668482|ref|YP_004451498.1| IclR family transcriptional regulator [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332337527|gb|AEE54625.1| transcriptional regulator, IclR family [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 234

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          M  A  N     +++IA+   +++     I + LV  G +E + G++ G RL   A ++T
Sbjct: 1  MLVAQRNGQSITLTEIADELQLNQATAANINKTLVHKGYLEHI-GKKKGYRLGPAAYRLT 59


>gi|289771072|ref|ZP_06530450.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|289701271|gb|EFD68700.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 323

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72


>gi|296504571|ref|YP_003666271.1| acetoin transport repressor [Bacillus thuringiensis BMB171]
 gi|296325623|gb|ADH08551.1| acetoin transport repressor [Bacillus thuringiensis BMB171]
          Length = 195

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++ ++     +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 82  LKSML---APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 129


>gi|260889450|ref|ZP_05900713.1| putative transcriptional regulator [Leptotrichia hofstadii F0254]
 gi|260860861|gb|EEX75361.1| putative transcriptional regulator [Leptotrichia hofstadii F0254]
          Length = 297

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +     ++Y  +         ++AE   +S   +++ +  L  AGI V   RG
Sbjct: 1  MKINRLFE-----IVYL-LLEKKTITAKELAEHFEVSVRTIYRDIDILSSAGIPVYFQRG 54

Query: 60 RRGGVRL 66
          + GG++L
Sbjct: 55 KSGGIKL 61


>gi|228922829|ref|ZP_04086127.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228836884|gb|EEM82227.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|225388883|ref|ZP_03758607.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme
           DSM 15981]
 gi|225045056|gb|EEG55302.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme
           DSM 15981]
          Length = 248

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 6   RTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQP 47
           ++ Y +  + Y A H +D    I+ IA +  +SE  L  + + 
Sbjct: 142 KSKYVLEAMNYIAEHYSDSDISITPIARSLGVSESHLSHVFKK 184


>gi|325002162|ref|ZP_08123274.1| IclR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 266

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 4  TKRTDY-------GIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + R DY       G+RVL   A     P   +  IA+   +S+    ++   L +AG + 
Sbjct: 3  SHRGDYTIESLARGLRVLT--AFGPARPEMSLQDIADHVDVSKAGALRLGHTLCEAGFLV 60

Query: 56 TVRGRRGGVRLCRPADQITIL 76
           V G   G RL      IT+ 
Sbjct: 61 RV-GDGRGYRLG--PTAITVG 78


>gi|319938936|ref|ZP_08013300.1| helix-turn-helix type 11 domain-containing protein [Streptococcus
          anginosus 1_2_62CV]
 gi|319811986|gb|EFW08252.1| helix-turn-helix type 11 domain-containing protein [Streptococcus
          anginosus 1_2_62CV]
          Length = 299

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
              ++AE   +S   +++ +  L  AGI + T++GR GG+RL   
Sbjct: 19 VTARELAEQFEVSVRTIYRDVDRLSSAGIPIYTMQGRDGGIRLTED 64


>gi|229192289|ref|ZP_04319254.1| Acetoin transport repressor [Bacillus cereus ATCC 10876]
 gi|228591239|gb|EEK49093.1| Acetoin transport repressor [Bacillus cereus ATCC 10876]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|150399141|ref|YP_001322908.1| helix-turn-helix type 11 domain-containing protein [Methanococcus
          vannielii SB]
 gi|150011844|gb|ABR54296.1| Helix-turn-helix type 11 domain protein [Methanococcus vannielii
          SB]
          Length = 87

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+  + +L       +      +IA         + + ++ L   G V+T +G+
Sbjct: 1  MKIDGITEQILTIL-------EKYTTTKEIAMELKTHPKNIDRYIRVLRDLGFVDTKKGK 53

Query: 61 RGGVRLCRPA------DQITILDVVKAT 82
           GGV L            I ++ +++  
Sbjct: 54 TGGVFLTNEGKYVLKKKNINLITILEKV 81


>gi|229019289|ref|ZP_04176115.1| Acetoin transport repressor [Bacillus cereus AH1273]
 gi|229025533|ref|ZP_04181943.1| Acetoin transport repressor [Bacillus cereus AH1272]
 gi|228735815|gb|EEL86400.1| Acetoin transport repressor [Bacillus cereus AH1272]
 gi|228741974|gb|EEL92148.1| Acetoin transport repressor [Bacillus cereus AH1273]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|229098547|ref|ZP_04229488.1| Acetoin transport repressor [Bacillus cereus Rock3-29]
 gi|228684869|gb|EEL38806.1| Acetoin transport repressor [Bacillus cereus Rock3-29]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|229075785|ref|ZP_04208762.1| Acetoin transport repressor [Bacillus cereus Rock4-18]
 gi|229104684|ref|ZP_04235346.1| Acetoin transport repressor [Bacillus cereus Rock3-28]
 gi|229117573|ref|ZP_04246945.1| Acetoin transport repressor [Bacillus cereus Rock1-3]
 gi|228665893|gb|EEL21363.1| Acetoin transport repressor [Bacillus cereus Rock1-3]
 gi|228678748|gb|EEL32963.1| Acetoin transport repressor [Bacillus cereus Rock3-28]
 gi|228707337|gb|EEL59533.1| Acetoin transport repressor [Bacillus cereus Rock4-18]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|228987268|ref|ZP_04147389.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229157661|ref|ZP_04285736.1| Acetoin transport repressor [Bacillus cereus ATCC 4342]
 gi|228625618|gb|EEK82370.1| Acetoin transport repressor [Bacillus cereus ATCC 4342]
 gi|228772497|gb|EEM20942.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|229168821|ref|ZP_04296540.1| Acetoin transport repressor [Bacillus cereus AH621]
 gi|228614669|gb|EEK71775.1| Acetoin transport repressor [Bacillus cereus AH621]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|217961570|ref|YP_002340140.1| transcriptional regulator, GntR family [Bacillus cereus AH187]
 gi|222097527|ref|YP_002531584.1| acetoin transport repressor [Bacillus cereus Q1]
 gi|228909908|ref|ZP_04073729.1| Acetoin transport repressor [Bacillus thuringiensis IBL 200]
 gi|229140813|ref|ZP_04269358.1| Acetoin transport repressor [Bacillus cereus BDRD-ST26]
 gi|217064553|gb|ACJ78803.1| transcriptional regulator, GntR family [Bacillus cereus AH187]
 gi|221241585|gb|ACM14295.1| Acetoin transport repressor [Bacillus cereus Q1]
 gi|228642603|gb|EEK98889.1| Acetoin transport repressor [Bacillus cereus BDRD-ST26]
 gi|228849743|gb|EEM94576.1| Acetoin transport repressor [Bacillus thuringiensis IBL 200]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|220914463|ref|YP_002489772.1| MarR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861341|gb|ACL41683.1| transcriptional regulator, MarR family [Arthrobacter
           chlorophenolicus A6]
          Length = 161

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 28/131 (21%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+   DY +  +   +        +S++A     S   L  ++  L K G VE  R   
Sbjct: 38  KLSLF-DYTVLAM--LSESEQRFLPMSELAARTSASLSRLSHVVTKLQKRGWVE--RRPH 92

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
                        +  +   TEE        A   ++                 N F D 
Sbjct: 93  --------PRDARV-TIAHLTEEGMSTIVGLAPGHVE--------------DVRNLFLDA 129

Query: 122 LTQYSIECLVR 132
           LT+  +E L R
Sbjct: 130 LTEEDVEDLAR 140


>gi|206976317|ref|ZP_03237225.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97]
 gi|206745513|gb|EDZ56912.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|220916677|ref|YP_002491981.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219954531|gb|ACL64915.1| biotin/acetyl-CoA-carboxylase ligase [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 330

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL + A   D       I++   ++   ++K +  L   G  ++ V  R  G RL    D
Sbjct: 12 VLAFLAEAGDEVVSGEAISDKLGLTRAAVWKHVNALRARGYRIDAVPAR--GYRLAEVPD 69

Query: 72 QITILDV 78
          ++T L++
Sbjct: 70 RLTALEL 76


>gi|157146924|ref|YP_001454243.1| hypothetical protein CKO_02700 [Citrobacter koseri ATCC BAA-895]
 gi|157084129|gb|ABV13807.1| hypothetical protein CKO_02700 [Citrobacter koseri ATCC BAA-895]
          Length = 475

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+ +  P    ++A    IS   +   +  L + G +E+ +G  
Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAAVLKISRTTVASAMAQLREEGYLESRQGSG 87


>gi|75762409|ref|ZP_00742279.1| Acetoin transport repressor [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490102|gb|EAO53448.1| Acetoin transport repressor [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 350

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 242 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 284


>gi|241896467|ref|ZP_04783763.1| iron-dependent repressor [Weissella paramesenteroides ATCC 33313]
 gi|241870447|gb|EER74198.1| iron-dependent repressor [Weissella paramesenteroides ATCC 33313]
          Length = 218

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRIS--QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            +T Y ++ ++  +   D   +IS  QIAE   ++   +  +L  L +AG V+ V     
Sbjct: 6   SKTQY-LQTILELSG-GDESTKISNNQIAEHLNVTPSSVSNMLAKLQEAGEVDVV--PYY 61

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL-RKALNAFFDV 121
           GV L +P  + T L +++    S  + E F + K+   +  +      L   A + F + 
Sbjct: 62  GVTLTKPGRE-TALRLIR----SHRLIETFGATKLGLSISEAHSNADHLDHDANDQFINA 116

Query: 122 LTQY 125
           L +Y
Sbjct: 117 LDKY 120


>gi|256833672|ref|YP_003162399.1| transcriptional regulator, ArsR family [Jonesia denitrificans DSM
          20603]
 gi|256687203|gb|ACV10096.1| transcriptional regulator, ArsR family [Jonesia denitrificans DSM
          20603]
          Length = 129

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          IR+L   A  + + + ++ + EA  +    L + L  L K  +V + R       L    
Sbjct: 27 IRILELLA--DGHEHTVTALQEATGLEASHLSQHLSVLRKHQLVVSTRRASHVYYLIAFP 84

Query: 71 DQITILDVVKAT 82
          +   +L V +  
Sbjct: 85 EVADLLTVARTL 96


>gi|206971251|ref|ZP_03232202.1| transcriptional regulator, GntR family [Bacillus cereus AH1134]
 gi|218231377|ref|YP_002368881.1| transcriptional regulator, GntR family [Bacillus cereus B4264]
 gi|218899238|ref|YP_002447649.1| transcriptional regulator, GntR family [Bacillus cereus G9842]
 gi|228902587|ref|ZP_04066738.1| Acetoin transport repressor [Bacillus thuringiensis IBL 4222]
 gi|228941228|ref|ZP_04103781.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228954362|ref|ZP_04116388.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228967110|ref|ZP_04128146.1| Acetoin transport repressor [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228974160|ref|ZP_04134730.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980752|ref|ZP_04141057.1| Acetoin transport repressor [Bacillus thuringiensis Bt407]
 gi|229047769|ref|ZP_04193349.1| Acetoin transport repressor [Bacillus cereus AH676]
 gi|229071581|ref|ZP_04204799.1| Acetoin transport repressor [Bacillus cereus F65185]
 gi|229081334|ref|ZP_04213837.1| Acetoin transport repressor [Bacillus cereus Rock4-2]
 gi|229111550|ref|ZP_04241101.1| Acetoin transport repressor [Bacillus cereus Rock1-15]
 gi|229152279|ref|ZP_04280472.1| Acetoin transport repressor [Bacillus cereus m1550]
 gi|229180357|ref|ZP_04307700.1| Acetoin transport repressor [Bacillus cereus 172560W]
 gi|206734023|gb|EDZ51194.1| transcriptional regulator, GntR family [Bacillus cereus AH1134]
 gi|218159334|gb|ACK59326.1| transcriptional regulator, GntR family [Bacillus cereus B4264]
 gi|218543282|gb|ACK95676.1| transcriptional regulator, GntR family [Bacillus cereus G9842]
 gi|228603104|gb|EEK60582.1| Acetoin transport repressor [Bacillus cereus 172560W]
 gi|228631241|gb|EEK87877.1| Acetoin transport repressor [Bacillus cereus m1550]
 gi|228671932|gb|EEL27225.1| Acetoin transport repressor [Bacillus cereus Rock1-15]
 gi|228701956|gb|EEL54439.1| Acetoin transport repressor [Bacillus cereus Rock4-2]
 gi|228711517|gb|EEL63474.1| Acetoin transport repressor [Bacillus cereus F65185]
 gi|228723561|gb|EEL74926.1| Acetoin transport repressor [Bacillus cereus AH676]
 gi|228778921|gb|EEM27183.1| Acetoin transport repressor [Bacillus thuringiensis Bt407]
 gi|228785500|gb|EEM33509.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228792479|gb|EEM40045.1| Acetoin transport repressor [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228805294|gb|EEM51887.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228818387|gb|EEM64459.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228857028|gb|EEN01537.1| Acetoin transport repressor [Bacillus thuringiensis IBL 4222]
 gi|326941851|gb|AEA17747.1| acetoin transport repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|118469920|ref|YP_885183.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118171207|gb|ABK72103.1| putative transcriptional regulator [Mycobacterium smegmatis str.
          MC2 155]
          Length = 254

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          R+L   A              ++AE   +S   L   L PL +AG++E   GR GG
Sbjct: 16 RILSMLAQGMLRPGSRLGTEREMAETFAVSRSTLRSALLPLSQAGVLERRTGRNGG 71


>gi|47568131|ref|ZP_00238835.1| acetoin transport repressor [Bacillus cereus G9241]
 gi|47555121|gb|EAL13468.1| acetoin transport repressor [Bacillus cereus G9241]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A  +  P  + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 29 MLAPRDKLP-SVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|328880685|emb|CCA53924.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 326

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +       ++++A    +S     + L+ L  AGI V + RGR GG  L
Sbjct: 16 LQTRTRVTVAEVAAELEVSPRTARRDLEALSTAGIPVYSQRGRGGGWSL 64


>gi|323441258|gb|EGA98930.1| transcriptional regulator [Staphylococcus aureus O46]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|323440335|gb|EGA98048.1| transcriptional regulator [Staphylococcus aureus O11]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|298693401|gb|ADI96623.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus ED133]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|283469376|emb|CAQ48587.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus ST398]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67


>gi|282915467|ref|ZP_06323239.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          D139]
 gi|283767878|ref|ZP_06340793.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          H19]
 gi|282320570|gb|EFB50908.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          D139]
 gi|283461757|gb|EFC08841.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          H19]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|257435194|ref|ZP_05611245.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M876]
 gi|282912992|ref|ZP_06320784.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus M899]
 gi|257285790|gb|EEV15906.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M876]
 gi|282323092|gb|EFB53411.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus M899]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|229174753|ref|ZP_04302277.1| Acetoin transport repressor [Bacillus cereus MM3]
 gi|228608743|gb|EEK66041.1| Acetoin transport repressor [Bacillus cereus MM3]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|257424274|ref|ZP_05600703.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257426950|ref|ZP_05603352.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257429588|ref|ZP_05605975.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257432235|ref|ZP_05608598.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|282902726|ref|ZP_06310619.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus C160]
 gi|282907127|ref|ZP_06314975.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282907470|ref|ZP_06315312.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282912373|ref|ZP_06320169.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282921408|ref|ZP_06329126.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C427]
 gi|282922619|ref|ZP_06330309.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C101]
 gi|283959583|ref|ZP_06377024.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|293498046|ref|ZP_06665900.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293511635|ref|ZP_06670329.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M809]
 gi|293550245|ref|ZP_06672917.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|297589119|ref|ZP_06947760.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|304380096|ref|ZP_07362817.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|257273292|gb|EEV05394.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257276581|gb|EEV08032.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257280069|gb|EEV10656.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 68-397]
 gi|257283114|gb|EEV13246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|282314840|gb|EFB45226.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C101]
 gi|282315823|gb|EFB46207.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          C427]
 gi|282324069|gb|EFB54385.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282328375|gb|EFB58646.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282330026|gb|EFB59547.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282597185|gb|EFC02144.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus C160]
 gi|283789175|gb|EFC28002.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|290919292|gb|EFD96368.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|291096977|gb|EFE27235.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291465593|gb|EFF08125.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M809]
 gi|297577630|gb|EFH96343.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|302750016|gb|ADL64193.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304341332|gb|EFM07250.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|312436754|gb|ADQ75825.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH60]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|148266561|ref|YP_001245504.1| regulatory protein GntR, HTH [Staphylococcus aureus subsp. aureus
          JH9]
 gi|150392600|ref|YP_001315275.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH1]
 gi|257794484|ref|ZP_05643463.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407555|ref|ZP_05680691.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258419828|ref|ZP_05682790.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258443885|ref|ZP_05692223.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258445085|ref|ZP_05693322.1| GntR family transcriptional regulator [Staphylococcus aureus
          A6300]
 gi|258447689|ref|ZP_05695828.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258455687|ref|ZP_05703642.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|282894358|ref|ZP_06302588.1| regulatory protein GntR, HTH [Staphylococcus aureus A8117]
 gi|282928388|ref|ZP_06335991.1| regulatory protein GntR, HTH [Staphylococcus aureus A10102]
 gi|295405406|ref|ZP_06815216.1| regulatory protein GntR [Staphylococcus aureus A8819]
 gi|297244743|ref|ZP_06928623.1| regulatory protein GntR [Staphylococcus aureus A8796]
 gi|147739630|gb|ABQ47928.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149945052|gb|ABR50988.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus
          JH1]
 gi|257788456|gb|EEV26796.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840780|gb|EEV65237.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257844110|gb|EEV68497.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257850769|gb|EEV74713.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257855993|gb|EEV78912.1| GntR family transcriptional regulator [Staphylococcus aureus
          A6300]
 gi|257858971|gb|EEV81835.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257861899|gb|EEV84672.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|282589972|gb|EFB95055.1| regulatory protein GntR, HTH [Staphylococcus aureus A10102]
 gi|282763403|gb|EFC03533.1| regulatory protein GntR, HTH [Staphylococcus aureus A8117]
 gi|294969481|gb|EFG45500.1| regulatory protein GntR [Staphylococcus aureus A8819]
 gi|297178260|gb|EFH37507.1| regulatory protein GntR [Staphylococcus aureus A8796]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|57652483|ref|YP_185024.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus COL]
 gi|87162100|ref|YP_492854.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_FPR3757]
 gi|88193910|ref|YP_498696.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus NCTC 8325]
 gi|151220291|ref|YP_001331114.1| hypothetical protein NWMN_0079 [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|161508404|ref|YP_001574063.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253730488|ref|ZP_04864653.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733763|ref|ZP_04867928.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|258424250|ref|ZP_05687131.1| transcriptional regulator [Staphylococcus aureus A9635]
 gi|258438657|ref|ZP_05689880.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258452282|ref|ZP_05700296.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|269201787|ref|YP_003281056.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ED98]
 gi|282923798|ref|ZP_06331475.1| transcriptional regulator [Staphylococcus aureus A9765]
 gi|294849071|ref|ZP_06789815.1| transcriptional regulator [Staphylococcus aureus A9754]
 gi|297209364|ref|ZP_06925762.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|300911363|ref|ZP_07128812.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|57286669|gb|AAW38763.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus COL]
 gi|87128074|gb|ABD22588.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus USA300_FPR3757]
 gi|87201468|gb|ABD29278.1| transcriptional regulator, GntR family, putative [Staphylococcus
          aureus subsp. aureus NCTC 8325]
 gi|150373091|dbj|BAF66351.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|160367213|gb|ABX28184.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253725781|gb|EES94510.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728230|gb|EES96959.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257845516|gb|EEV69549.1| transcriptional regulator [Staphylococcus aureus A9635]
 gi|257848216|gb|EEV72208.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257860119|gb|EEV82953.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|262074077|gb|ACY10050.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ED98]
 gi|282593040|gb|EFB98041.1| transcriptional regulator [Staphylococcus aureus A9765]
 gi|294823963|gb|EFG40388.1| transcriptional regulator [Staphylococcus aureus A9754]
 gi|296885825|gb|EFH24760.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|300887542|gb|EFK82738.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|320139470|gb|EFW31342.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus MRSA131]
 gi|320142127|gb|EFW33946.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus MRSA177]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 39 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 72


>gi|49482378|ref|YP_039602.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|221142229|ref|ZP_03566722.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|295426680|ref|ZP_06819319.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|49240507|emb|CAG39164.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|269939662|emb|CBI48030.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus TW20]
 gi|295129132|gb|EFG58759.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|315194591|gb|EFU24980.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus CGS00]
 gi|329312834|gb|AEB87247.1| Transcriptional regulator [Staphylococcus aureus subsp. aureus
          T0131]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67


>gi|21281838|ref|NP_644924.1| hypothetical protein MW0109 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49485013|ref|YP_042234.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|82749848|ref|YP_415589.1| transcriptional regulator [Staphylococcus aureus RF122]
 gi|262049772|ref|ZP_06022637.1| hypothetical protein SAD30_1871 [Staphylococcus aureus D30]
 gi|262052078|ref|ZP_06024288.1| hypothetical protein SA930_0182 [Staphylococcus aureus 930918-3]
 gi|284023145|ref|ZP_06377543.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 132]
 gi|296277192|ref|ZP_06859699.1| GntR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MR1]
 gi|21203273|dbj|BAB93974.1| MW0109 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243456|emb|CAG41877.1| GntR family regulatory protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|82655379|emb|CAI79762.1| probable transcriptional regulator [Staphylococcus aureus RF122]
 gi|259160056|gb|EEW45090.1| hypothetical protein SA930_0182 [Staphylococcus aureus 930918-3]
 gi|259162162|gb|EEW46739.1| hypothetical protein SAD30_1871 [Staphylococcus aureus D30]
 gi|302331883|gb|ADL22076.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus JKD6159]
 gi|315196447|gb|EFU26797.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|329731630|gb|EGG67990.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus 21189]
 gi|329732570|gb|EGG68920.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67


>gi|15923125|ref|NP_370659.1| hypothetical protein SAV0135 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15925839|ref|NP_373372.1| hypothetical protein SA0130 [Staphylococcus aureus subsp. aureus
          N315]
 gi|156978465|ref|YP_001440724.1| hypothetical protein SAHV_0134 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|253316251|ref|ZP_04839464.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus
          str. CF-Marseille]
 gi|255004932|ref|ZP_05143533.2| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|13700051|dbj|BAB41350.1| SA0130 [Staphylococcus aureus subsp. aureus N315]
 gi|14245902|dbj|BAB56297.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720600|dbj|BAF77017.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|285815860|gb|ADC36347.1| Predicted regulator for deoxynucleoside utilization, GntR family
          [Staphylococcus aureus 04-02981]
 gi|312828652|emb|CBX33494.1| bacterial regulatory proteins, gntR family protein
          [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129116|gb|EFT85112.1| regulatory protein GntR HTH [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|329725661|gb|EGG62140.1| transcriptional regulator, GntR family [Staphylococcus aureus
          subsp. aureus 21172]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     +S + L + ++ L + GIVE+ RG+ 
Sbjct: 34 KELCARFDVSRMTLRQAIKLLAEDGIVESTRGKG 67


>gi|163941819|ref|YP_001646703.1| GntR family transcriptional regulator [Bacillus
          weihenstephanensis KBAB4]
 gi|163864016|gb|ABY45075.1| transcriptional regulator, GntR family [Bacillus
          weihenstephanensis KBAB4]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|325964900|ref|YP_004242806.1| hypothetical protein Asphe3_35710 [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323470987|gb|ADX74672.1| hypothetical protein Asphe3_35710 [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 120

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
             +  AI  D   RI  +A    ++E    KI   LV+AG +   R GRR    + 
Sbjct: 26 HAHVLLAIARDPQIRIRDVAARVGVTERAAQKITADLVEAGYLTRTREGRRNSYTVA 82


>gi|311068758|ref|YP_003973681.1| hypothetical protein BATR1942_09085 [Bacillus atrophaeus 1942]
 gi|310869275|gb|ADP32750.1| hypothetical protein BATR1942_09085 [Bacillus atrophaeus 1942]
          Length = 327

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70
          L+   +   D      +I++A   S   ++K ++ L   G  VE VR +  G RL +   
Sbjct: 9  LIDLFSKAGDEFISGQKISDALGCSRTAVWKHIEELRNEGYEVEAVRRK--GYRLVKKPG 66

Query: 71 ----DQITIL 76
               +I   
Sbjct: 67 KLSESEIRFG 76


>gi|297157413|gb|ADI07125.1| transcriptional regulator, ArsR family protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 296

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
              H   P+  +Q+A    +S   + + L  L  AG+V + R
Sbjct: 235 LLAHTSSPSTTTQLAARTGLSPGAVSQHLAVLRDAGLVTSHR 276


>gi|256787173|ref|ZP_05525604.1| DeoR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 330

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 33 ELADRLGVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 79


>gi|269957905|ref|YP_003327694.1| Helix-turn-helix type 11 domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306586|gb|ACZ32136.1| Helix-turn-helix type 11 domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 329

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A    +S   + + +  L + G  V+  +G  GG RL
Sbjct: 26 LAGRLGVSPRTVRRDVDRLRELGYPVQATKGPDGGYRL 63


>gi|326445658|ref|ZP_08220392.1| DeoR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 326

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +        ++++    +SE    + L  L  AG+ V +V+GR GG RL
Sbjct: 9  ILLLLQRREQVTAAEVSRELDVSERTARRDLDALAMAGVPVYSVQGRGGGWRL 61


>gi|218463580|ref|ZP_03503671.1| transcriptional regulator, AsnC family protein [Rhizobium etli Kim
           5]
          Length = 147

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 33/146 (22%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL----C 67
           R+L     +   P+  +++AE   +S   + + ++ L + G+++       G  +     
Sbjct: 11  RILTELTRNGRIPH--AELAEKVHLSRNAVRQRIERLERDGLIQ-------GYTIVVGEG 61

Query: 68  RP-ADQITI------------LDVVKATEESFFVAEC-FASHKID----CPLVGSCGLTS 109
           +P A  IT              DV++  +    V  C   S + D         +  +  
Sbjct: 62  KPRAAAITAMIFVYRHDRMRGGDVIQTLKGIPEVISCDIMSGEFDLVVRVEASAADRIRE 121

Query: 110 VLRK--ALNAFFDVLTQYSIECLVRN 133
           + ++  AL    D LT +++  +++ 
Sbjct: 122 IWQEVSALQGVRDTLTAFALSSMIKR 147


>gi|210622694|ref|ZP_03293316.1| hypothetical protein CLOHIR_01264 [Clostridium hiranonis DSM
          13275]
 gi|210154095|gb|EEA85101.1| hypothetical protein CLOHIR_01264 [Clostridium hiranonis DSM
          13275]
          Length = 316

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           + ++M     N+   +I +IA    +S   + +    L +AGI + +  G+ GG  + 
Sbjct: 7  ALNMVMLL--QNNGKMKIEEIARELEVSNRQVQEYKSELEQAGIFINSQSGKYGGYSIA 63


>gi|90410043|ref|ZP_01218060.1| melibiose operon regulator [Photobacterium profundum 3TCK]
 gi|90329396|gb|EAS45653.1| melibiose operon regulator [Photobacterium profundum 3TCK]
          Length = 335

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 3   LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
           L+K +  Y  ++L Y A H+D P  + QIA+   +   +   I Q +
Sbjct: 193 LSKHSQFYVSQMLEYIASHHDTPLTVKQIADHVGLHANYAMGIFQRM 239


>gi|30264154|ref|NP_846531.1| GntR family transcriptional regulator [Bacillus anthracis str.
          Ames]
 gi|47529593|ref|YP_020942.1| GntR family transcriptional regulator [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49186985|ref|YP_030237.1| GntR family transcriptional regulator [Bacillus anthracis str.
          Sterne]
 gi|65321471|ref|ZP_00394430.1| COG1725: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165871133|ref|ZP_02215783.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0488]
 gi|167633670|ref|ZP_02391994.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0442]
 gi|167639464|ref|ZP_02397735.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0193]
 gi|170687247|ref|ZP_02878465.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0465]
 gi|170705838|ref|ZP_02896301.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0389]
 gi|177652641|ref|ZP_02935057.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0174]
 gi|190566154|ref|ZP_03019073.1| transcriptional regulator, GntR family [Bacillus anthracis
          Tsiankovskii-I]
 gi|227816856|ref|YP_002816865.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          CDC 684]
 gi|229602570|ref|YP_002868378.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0248]
 gi|254683846|ref|ZP_05147706.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. CNEVA-9066]
 gi|254721681|ref|ZP_05183470.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. A1055]
 gi|254736193|ref|ZP_05193899.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Western North America USA6153]
 gi|254744082|ref|ZP_05201765.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Kruger B]
 gi|254754138|ref|ZP_05206173.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Vollum]
 gi|254758172|ref|ZP_05210199.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Australia 94]
 gi|30258799|gb|AAP28017.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          Ames]
 gi|47504741|gb|AAT33417.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49180912|gb|AAT56288.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          Sterne]
 gi|164713052|gb|EDR18579.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0488]
 gi|167512523|gb|EDR87898.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0193]
 gi|167531076|gb|EDR93763.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0442]
 gi|170129378|gb|EDS98242.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0389]
 gi|170668864|gb|EDT19609.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0465]
 gi|172081976|gb|EDT67044.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0174]
 gi|190563073|gb|EDV17039.1| transcriptional regulator, GntR family [Bacillus anthracis
          Tsiankovskii-I]
 gi|227006038|gb|ACP15781.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          CDC 684]
 gi|229266978|gb|ACQ48615.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0248]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|298247835|ref|ZP_06971640.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297550494|gb|EFH84360.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 320

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +L     H+       ++A    +    + + +Q L + G+ VE  RG  GG RL
Sbjct: 9  LTILELLQTHSQ--MSGEEMARRLEVEPRTVRRYIQMLQEMGMPVEGARGPGGGYRL 63


>gi|118591285|ref|ZP_01548683.1| regulatory protein GntR, HTH [Stappia aggregata IAM 12614]
 gi|118435957|gb|EAV42600.1| regulatory protein GntR, HTH [Stappia aggregata IAM 12614]
          Length = 243

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +     + +AE   +S   + + L+ L    ++ + RG  GG
Sbjct: 33 EERLPSEADLAERFGVSRSTVREALKRLAAQNLIRSERGSSGG 75


>gi|332669373|ref|YP_004452381.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484]
 gi|332338411|gb|AEE44994.1| regulatory protein DeoR [Cellulomonas fimi ATCC 484]
          Length = 400

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          + ++   R++ +A    ++ +   + +  L   G+V  V    GGV L RP D     DV
Sbjct: 29 LRHEGTVRVTDLAARLDVTPVTARRDVTRLAGEGLVHRV---HGGVTLDRPDDA--AGDV 83

Query: 79 VKATE 83
           +A E
Sbjct: 84 GRAVE 88


>gi|300784983|ref|YP_003765274.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299794497|gb|ADJ44872.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 327

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A    +SE  + + +  L + G  V+ V+G  GG RL
Sbjct: 31 LAGRLGVSERTVRRDVDRLRELGYPVQAVKGPDGGYRL 68


>gi|298246252|ref|ZP_06970058.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer
          DSM 44963]
 gi|297553733|gb|EFH87598.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer
          DSM 44963]
          Length = 133

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + ++ + A   +    ++ +     IS+  +   L+ L +AG+++T R
Sbjct: 39 LTIVYHLARQPE--ISVTDLTAMLNISQPLVSWHLRKLRRAGLIQTRR 84


>gi|108761446|ref|YP_628384.1| hypothetical protein MXAN_0101 [Myxococcus xanthus DK 1622]
 gi|108465326|gb|ABF90511.1| hypothetical protein MXAN_0101 [Myxococcus xanthus DK 1622]
          Length = 374

 Score = 38.8 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G R++            +  ++E    S  + + +++ LV  G VE V G+R G RL R 
Sbjct: 159 GCRIVRTLLQSPGEAQTVRALSERTQTSYSYAYGVVRHLVLDGYVEPV-GKRSGFRL-RA 216

Query: 70  A 70
            
Sbjct: 217 P 217


>gi|329934388|ref|ZP_08284467.1| MarR family transcriptional regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305984|gb|EGG49839.1| MarR family transcriptional regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 163

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R L   A H + P R+  ++E   I+      I+  L + G+VE VR
Sbjct: 59  LRALRMLA-HAERPLRMRDLSERAGIAARTATTIVDSLERDGLVERVR 105


>gi|302527361|ref|ZP_07279703.1| DeoR family transcriptional regulator [Streptomyces sp. AA4]
 gi|302436256|gb|EFL08072.1| DeoR family transcriptional regulator [Streptomyces sp. AA4]
          Length = 349

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   + + +  L + G  + T +G  GG RL
Sbjct: 43 LAERLEVSPRTVRRDVDRLRELGYPIVTTKGPDGGYRL 80


>gi|190574077|ref|YP_001971922.1| putative ArsR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011999|emb|CAQ45621.1| putative ArsR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 221

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + ++AE   +S     + LQ L +AG+V+T R   G   L R  D   + +++ A     
Sbjct: 41  VERLAELTGLSVANTSQHLQQLRRAGLVQTRR--DGKRILYRSGDG-PLGNLLAAL---- 93

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
                      D        +  V+  +L    D L   ++E L+  RSS+
Sbjct: 94  ----------RDYADHQRSEMHGVIHDSLQR-RDALEGLTVEQLLEQRSSV 133


>gi|169630560|ref|YP_001704209.1| IclR family regulatory protein [Mycobacterium abscessus ATCC
          19977]
 gi|169242527|emb|CAM63555.1| Putative regulatory protein, IclR family [Mycobacterium
          abscessus]
          Length = 296

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
            ++L + A     P  +++IAEA  ++      ILQ L +AG +
Sbjct: 11 AAQILDHLAGRPTLPLSMTEIAEAVGVNPASTLAILQALTEAGYI 55


>gi|119383854|ref|YP_914910.1| GntR domain-containing protein [Paracoccus denitrificans PD1222]
 gi|119373621|gb|ABL69214.1| transcriptional regulator, GntR family [Paracoccus denitrificans
          PD1222]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-----AD 71
           A+ ++      ++A    IS   + + L+ L    ++ + RG  GG  + RP     A 
Sbjct: 30 LAV-DERLPTEEELARRFAISRPTVREALKVLAAQNLIRSRRGPAGGTFVNRPDADGAAR 88

Query: 72 QIT 74
           IT
Sbjct: 89 SIT 91


>gi|120403273|ref|YP_953102.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
 gi|119956091|gb|ABM13096.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 282

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      ++A    +S   + + ++ L  AG + + RGR GG  +          DV
Sbjct: 83  RPGESLPPERELATRLGVSRDTVREAIKSLADAGYLVSRRGRYGGTFIADALPAPRTGDV 142


>gi|229013287|ref|ZP_04170428.1| Acetoin transport repressor [Bacillus mycoides DSM 2048]
 gi|229061750|ref|ZP_04199083.1| Acetoin transport repressor [Bacillus cereus AH603]
 gi|229134886|ref|ZP_04263693.1| Acetoin transport repressor [Bacillus cereus BDRD-ST196]
 gi|228648561|gb|EEL04589.1| Acetoin transport repressor [Bacillus cereus BDRD-ST196]
 gi|228717496|gb|EEL69160.1| Acetoin transport repressor [Bacillus cereus AH603]
 gi|228748054|gb|EEL97918.1| Acetoin transport repressor [Bacillus mycoides DSM 2048]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|228960343|ref|ZP_04121996.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229129357|ref|ZP_04258328.1| Acetoin transport repressor [Bacillus cereus BDRD-Cer4]
 gi|229146651|ref|ZP_04275018.1| Acetoin transport repressor [Bacillus cereus BDRD-ST24]
 gi|228636821|gb|EEK93284.1| Acetoin transport repressor [Bacillus cereus BDRD-ST24]
 gi|228653962|gb|EEL09829.1| Acetoin transport repressor [Bacillus cereus BDRD-Cer4]
 gi|228799367|gb|EEM46331.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|228935398|ref|ZP_04098216.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|229198200|ref|ZP_04324909.1| Acetoin transport repressor [Bacillus cereus m1293]
 gi|228585360|gb|EEK43469.1| Acetoin transport repressor [Bacillus cereus m1293]
 gi|228824150|gb|EEM69964.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|42783192|ref|NP_980439.1| GntR family transcriptional regulator [Bacillus cereus ATCC
          10987]
 gi|42739120|gb|AAS43047.1| transcriptional regulator, GntR family [Bacillus cereus ATCC
          10987]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|85707140|ref|ZP_01038227.1| transcriptional regulator, ArsR family protein [Roseovarius sp.
           217]
 gi|85668299|gb|EAQ23173.1| transcriptional regulator, ArsR family protein [Roseovarius sp.
           217]
          Length = 221

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 8   DYGIRV--------LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR- 58
           +Y +          LM           +  +A    ++     + LQ L +AG+V + R 
Sbjct: 12  EYALIAQALAAPARLMLLEQLAQTEASVETLAHKTGLTVANTSQHLQQLRRAGLVTSRRA 71

Query: 59  GRRGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           G+     L R A  IT++ ++    E +               L G       L +A  A
Sbjct: 72  GKTVIYAL-RDARTITLMGLMSEVAETNLAQVTVILDG-----LSGDAPTPEPLTRAELA 125

Query: 118 FFDVLTQYSIECL 130
               +   ++  +
Sbjct: 126 ERLTIGAVTLLDI 138


>gi|330504546|ref|YP_004381415.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01]
 gi|328918832|gb|AEB59663.1| GntR family transcriptional regulator [Pseudomonas mendocina NK-01]
          Length = 251

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             +     S I E   +S   + + L  L  AG+VET  G            G R+    
Sbjct: 36  RGEKLPTESAIMEEQGVSRTVVREALSRLQAAGLVETRHGIGTFVLDTPSASGFRI--DP 93

Query: 71  DQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
             I T+ DV+   E    +     S  +         L ++ R+AL+A  + 
Sbjct: 94  ATIVTLRDVLAILELRISLE--VESAGMAAARRSDAQLKAI-REALDAINES 142


>gi|150402245|ref|YP_001329539.1| BadM/Rrf2 family transcriptional regulator [Methanococcus
          maripaludis C7]
 gi|150033275|gb|ABR65388.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus
          maripaludis C7]
          Length = 144

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+   ++L       +  +   +IA         + + ++ L   G +ET +G+
Sbjct: 1  MKIDGLTE---KILTLL----EKYSTTREIAAELETHPKNIDRYIRVLRDLGFIETKKGK 53

Query: 61 RGGVRLC 67
           GGV L 
Sbjct: 54 TGGVFLT 60


>gi|145596645|ref|YP_001160942.1| helix-turn-helix, type 11 domain-containing protein [Salinispora
          tropica CNB-440]
 gi|145305982|gb|ABP56564.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica
          CNB-440]
          Length = 332

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +        +++A    +SE  +++ +  L  AG+ V   +GR GG RL
Sbjct: 19 MVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQGRHGGYRL 71


>gi|111224921|ref|YP_715715.1| DeoR family transcriptional regulator [Frankia alni ACN14a]
 gi|111152453|emb|CAJ64189.1| Putative DeoR family transcriptional regulator [Frankia alni
          ACN14a]
          Length = 374

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     I +++            +QIA    +S+  + + L  L + G+ + + RG
Sbjct: 1  MRASRL--IAITMML----QAHERLTAAQIAGRLGVSDRTVRRDLDVLGELGVPLYSERG 54

Query: 60 RRGGVRL 66
          R GG RL
Sbjct: 55 RGGGWRL 61


>gi|52141415|ref|YP_085413.1| GntR family transcriptional regulator [Bacillus cereus E33L]
 gi|196034945|ref|ZP_03102352.1| transcriptional regulator, GntR family [Bacillus cereus W]
 gi|228916717|ref|ZP_04080282.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228947797|ref|ZP_04110084.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229123600|ref|ZP_04252795.1| Acetoin transport repressor [Bacillus cereus 95/8201]
 gi|51974884|gb|AAU16434.1| transcriptional regulator, GntR family [Bacillus cereus E33L]
 gi|195992484|gb|EDX56445.1| transcriptional regulator, GntR family [Bacillus cereus W]
 gi|228659735|gb|EEL15380.1| Acetoin transport repressor [Bacillus cereus 95/8201]
 gi|228811784|gb|EEM58118.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228842904|gb|EEM87987.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|46908368|ref|YP_014757.1| hypothetical protein LMOf2365_2166 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47091802|ref|ZP_00229597.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226224739|ref|YP_002758846.1| hypothetical protein Lm4b_02156 [Listeria monocytogenes Clip81459]
 gi|254825305|ref|ZP_05230306.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254853260|ref|ZP_05242608.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931756|ref|ZP_05265115.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254992818|ref|ZP_05275008.1| hypothetical protein LmonocytoFSL_07044 [Listeria monocytogenes FSL
           J2-064]
 gi|300764060|ref|ZP_07074056.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|46881639|gb|AAT04934.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019813|gb|EAL10551.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225877201|emb|CAS05915.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606617|gb|EEW19225.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583311|gb|EFF95343.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293594551|gb|EFG02312.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515401|gb|EFK42452.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|328465940|gb|EGF37121.1| hypothetical protein LM1816_07768 [Listeria monocytogenes 1816]
 gi|332312583|gb|EGJ25678.1| hypothetical protein LMOSA_1210 [Listeria monocytogenes str. Scott
           A]
          Length = 236

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56
           L+   ++G+R+       ++    + +      +A+    S+ +  K+L  L + GI+E+
Sbjct: 155 LSTMIEFGLRI-------SEKIVELPEFLTYQILADHANTSKSYTSKVLGHLREEGILES 207

Query: 57  VR 58
            R
Sbjct: 208 QR 209


>gi|217968106|ref|YP_002353612.1| hypothetical protein Dtur_1726 [Dictyoglomus turgidum DSM 6724]
 gi|217337205|gb|ACK42998.1| conserved hypothetical protein [Dictyoglomus turgidum DSM 6724]
          Length = 195

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--- 57
          M LT+R    ++ L      N  P   ++IA+   +S    + I+Q L K G VE V   
Sbjct: 1  MSLTERRRQFLQALENLYKKNKRPIHYAEIAKELSVSPATAYDIMQALYKNGYVEAVYLE 60

Query: 58 ------RGRR 61
                RGR 
Sbjct: 61 NSVNNKRGRG 70


>gi|93006292|ref|YP_580729.1| ArsR family transcriptional regulator [Psychrobacter
          cryohalolentis K5]
 gi|92393970|gb|ABE75245.1| transcriptional regulator, ArsR family [Psychrobacter
          cryohalolentis K5]
          Length = 129

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 26/105 (24%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L++ T   ++       H        +IA    +    +   L  L +AG V + R    
Sbjct: 13 LSQETR--LKAFRLLVSHEPLGLPAGEIARQLSVPHNTMSTHLSVLARAGWVISER---- 66

Query: 63 GVRLCRPADQITILDVVKA--------TEESFFVAECFASHKIDC 99
                 + QI    + +A         E  F + +C + H   C
Sbjct: 67 ------QSRQI----IYRASLSHMQTVIE--FLLQDCCSGHPELC 99


>gi|219669340|ref|YP_002459775.1| ArsR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539600|gb|ACL21339.1| transcriptional regulator, ArsR family [Desulfitobacterium
           hafniense DCB-2]
          Length = 350

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +P    Q+AE   +SE  + K L+ L +AG+V + R
Sbjct: 271 HPYCTQQLAEMYNLSEATVSKHLKVLSRAGLVYSQR 306


>gi|313889724|ref|ZP_07823366.1| transcriptional regulator, MarR family [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121769|gb|EFR44866.1| transcriptional regulator, MarR family [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 150

 Score = 38.8 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
            VL++ + + +    +  I     IS+     +++ + K G ++ +              
Sbjct: 37  HVLIFLSRNVERELFVKDIETELGISKSVASNLVKRMEKNGFIKVIP----------SQT 86

Query: 72  QITILDVVKA---TEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDV 121
                 VV A    E+   + EC    +     +  +   C +  V+ +      D 
Sbjct: 87  DKRYKQVVMAEKGVEKLPLLQECRKDVENYFFKEISMEEFCVVRKVIDQLKQNMLDY 143


>gi|317050680|ref|YP_004111796.1| biotin/acetyl-CoA-carboxylase ligase [Desulfurispirillum indicum
          S5]
 gi|316945764|gb|ADU65240.1| biotin/acetyl-CoA-carboxylase ligase [Desulfurispirillum indicum
          S5]
          Length = 336

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
           +L +   H D      +++    IS   + K +  L  AG  +E+    + G +
Sbjct: 13 HILQHLWQHQDQWVSGEELSGQLGISRTAINKHIGHLRSAGYTIESS--PKKGYQ 65


>gi|221218218|ref|YP_002524245.1| regulatory protein, GntR:Bacterial regulatory protein, GntR
          [Rhodobacter sphaeroides KD131]
 gi|221163245|gb|ACM04211.1| regulatory protein, GntR:Bacterial regulatory protein, GntR
          [Rhodobacter sphaeroides KD131]
          Length = 267

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          IR  +     AI    PN   Q+A    IS   + + L+ L    ++ + RG  GG  + 
Sbjct: 22 IRAAIMDGRLAIDERLPNE-EQLAHRFGISRPTVREALKVLAAQNLIRSRRGPAGGTFVT 80

Query: 68 RP 69
          RP
Sbjct: 81 RP 82


>gi|315645861|ref|ZP_07898982.1| transcriptional regulator, GntR family with LacI sensor
          [Paenibacillus vortex V453]
 gi|315278622|gb|EFU41936.1| transcriptional regulator, GntR family with LacI sensor
          [Paenibacillus vortex V453]
          Length = 401

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +          +IA+   +S   + +    L K G +E ++G+       R  +
Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPE 76


>gi|239979072|ref|ZP_04701596.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291450949|ref|ZP_06590339.1| DeoR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291353898|gb|EFE80800.1| DeoR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 325

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          IR+++     +      +++A    +SE  + +  + L +AGI V   RGR GG  L
Sbjct: 7  IRMVLLL--QSRPRMTAAELAGELGVSERTVARDAEALSEAGIPVYAERGRAGGYAL 61


>gi|126433596|ref|YP_001069287.1| helix-turn-helix, type 11 domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126233396|gb|ABN96796.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. JLS]
          Length = 317

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++AE   ++   + + +  L   G  V   RG  GG +L 
Sbjct: 7  RVLQLLGLLQSRRVWSGEELAERLGVTTRSVRRDIDRLRDLGYPVAASRGHGGGYQLG 64


>gi|288551631|ref|YP_003422557.1| pSQ10.9 [Nocardiopsis sp. 90127]
 gi|88697162|gb|ABD48732.1| pSQ10.9 [Nocardiopsis sp. 90127]
          Length = 258

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 3  LTKRTDYG--IRVLMYCAIHN-DYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVR 58
          ++K ++    +R  +    H         + +AE   +S   + + L+ L   G+V   R
Sbjct: 9  MSKYSEVADQLRSAIERGEHPRGSALPSEERLAEQFGVSRPVINRALRLLRSEGLVRVER 68

Query: 59 GRR 61
          GR 
Sbjct: 69 GRG 71


>gi|326328962|ref|ZP_08195292.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium
          Broad-1]
 gi|325953221|gb|EGD45231.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium
          Broad-1]
          Length = 157

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T+Y   VLM  +   ++  R+S++A    IS   L ++++ L ++G+VE VR
Sbjct: 39 TEY--TVLMNLSEAPEHSLRMSELANYVSISVSGLTRVVERLERSGLVERVR 88


>gi|229818962|ref|YP_002880488.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
 gi|229564875|gb|ACQ78726.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
          Length = 334

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          + +AE   ++   + + +  L + G  V   +G  GG RL 
Sbjct: 27 ATLAERLAVTPRTVRRDVDRLRELGYPVVATKGPHGGYRLA 67


>gi|229821143|ref|YP_002882669.1| ArsR family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229567056|gb|ACQ80907.1| transcriptional regulator, ArsR family [Beutenbergia cavernae DSM
          12333]
          Length = 337

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +A+   +S+  +   L+ L ++GIV + R
Sbjct: 47 LRMLSLLATAPTGEVCVCDLADLSDVSQPTVSHHLKVLRESGIVASQR 94


>gi|15679716|ref|NP_276834.1| phosphate transport system regulator related protein
          [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622855|gb|AAB86194.1| phosphate transport system regulator related protein
          [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 303

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P+   +IAE   I+  ++ K+LQPL++ G+V 
Sbjct: 20 ENPSTQDEIAERLGITRRYVTKLLQPLIREGVVR 53


>gi|111020356|ref|YP_703328.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819886|gb|ABG95170.1| probable transcriptional regulator, ArsR family protein
          [Rhodococcus jostii RHA1]
          Length = 128

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+E+  +S+  +   L+ L  AG+++  R
Sbjct: 42 LRLLSLIASHAGGEACVCDISESFDLSQPTISHHLKVLRAAGLLDCER 89


>gi|40806486|gb|AAR92148.1| putative transcriptional regulator [Mycobacterium smegmatis str.
          MC2 155]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          R+L   A              ++AE   +S   L   L PL +AG++E   GR GG
Sbjct: 8  RILSMLAQGMLRPGSRLGTEREMAETFAVSRSTLRSALLPLSQAGVLERRTGRNGG 63


>gi|11497694|ref|NP_068915.1| biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase
          (birA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650573|gb|AAB91153.1| biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase
          (birA) [Archaeoglobus fulgidus DSM 4304]
          Length = 299

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 14/93 (15%)

Query: 1  MHLTKR-TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETV 57
          M +++  TDY + R+L      ++ P    ++A+   IS   ++K +Q L + G  VE+ 
Sbjct: 1  MRISRESTDYRVYRIL------SENPLSGEKLAKKLGISRTAVWKAVQKLKECGVYVESN 54

Query: 58 RGRRGGVRLCRPADQITILDVVK-ATEESFFVA 89
               G  +    +++   +V + A E  F   
Sbjct: 55 AS---GYTIAGE-EELNPYEVARLAFESGFKEV 83


>gi|85712055|ref|ZP_01043108.1| Uncharacterized protein containing Fic domain [Idiomarina baltica
           OS145]
 gi|85694045|gb|EAQ31990.1| Uncharacterized protein containing Fic domain [Idiomarina baltica
           OS145]
          Length = 238

 Score = 38.8 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           R +++  ++ +      +IAE   +S   + K    L + G +E V   RGG  
Sbjct: 171 RKVLFL-VNKERGISAQRIAELLGLSSRAVEKQFARLKQQGKLERVGSPRGGYW 223


>gi|326444564|ref|ZP_08219298.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 363

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT          M    H    P   S++A     SE  + + L+ L +AG+V + R
Sbjct: 284 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 336


>gi|302550899|ref|ZP_07303241.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
 gi|302468517|gb|EFL31610.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
          Length = 333

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPAMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61


>gi|196038855|ref|ZP_03106163.1| transcriptional regulator, GntR family [Bacillus cereus
          NVH0597-99]
 gi|196045909|ref|ZP_03113138.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108]
 gi|218905214|ref|YP_002453048.1| transcriptional regulator, GntR family [Bacillus cereus AH820]
 gi|225866063|ref|YP_002751441.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102]
 gi|228929126|ref|ZP_04092153.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229031720|ref|ZP_04187713.1| Acetoin transport repressor [Bacillus cereus AH1271]
 gi|229163015|ref|ZP_04290971.1| Acetoin transport repressor [Bacillus cereus R309803]
 gi|229186323|ref|ZP_04313488.1| Acetoin transport repressor [Bacillus cereus BGSC 6E1]
 gi|196023349|gb|EDX62027.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108]
 gi|196030578|gb|EDX69177.1| transcriptional regulator, GntR family [Bacillus cereus
          NVH0597-99]
 gi|218538797|gb|ACK91195.1| transcriptional regulator, GntR family [Bacillus cereus AH820]
 gi|225790062|gb|ACO30279.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102]
 gi|228597117|gb|EEK54772.1| Acetoin transport repressor [Bacillus cereus BGSC 6E1]
 gi|228620421|gb|EEK77291.1| Acetoin transport repressor [Bacillus cereus R309803]
 gi|228729604|gb|EEL80591.1| Acetoin transport repressor [Bacillus cereus AH1271]
 gi|228830416|gb|EEM76026.1| Acetoin transport repressor [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|306833376|ref|ZP_07466503.1| GntR family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304424146|gb|EFM27285.1| GntR family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 122

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + D    + ++AE   ++   + +    L + G+V + R
Sbjct: 30 NGDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68


>gi|297153425|gb|ADI03137.1| transposase [Streptomyces bingchenggensis BCW-1]
          Length = 173

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCG 106
             L       T+ D+V+  E  + + ECF + K +C       C 
Sbjct: 67  YYLAYAPLDATVADLVRVAESRWAIEECFQAAKNECGLDRYEVCR 111


>gi|325673702|ref|ZP_08153393.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|325555723|gb|EGD25394.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 329

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          S +A+   IS   + + +  L + G  +    G  GG RL
Sbjct: 24 STLAQRLDISPRTVRRDIDRLREMGYAIHATMGPTGGYRL 63


>gi|227533066|ref|ZP_03963115.1| plasmid replication protein RepR [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227189300|gb|EEI69367.1| plasmid replication protein RepR [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 507

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67
           I++A  I    L K+L+ +  AG  ++ T RGR GG+ + 
Sbjct: 396 ISDALSIPSRSLAKLLRLMQAAGEIVLHTRRGRNGGLSIA 435


>gi|148554593|ref|YP_001262175.1| GntR family transcriptional regulator [Sphingomonas wittichii
          RW1]
 gi|148499783|gb|ABQ68037.1| transcriptional regulator, GntR family [Sphingomonas wittichii
          RW1]
          Length = 246

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D       +A    +S   L + ++ L   G+VE+ RG  GG+
Sbjct: 31 LPGDKLPPERALALQLGVSRTVLREAIRALEGEGLVESRRGAMGGL 76


>gi|324327984|gb|ADY23244.1| GntR family transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 139

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|294816234|ref|ZP_06774877.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328833|gb|EFG10476.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 338

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1   MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M LT          M    H    P   S++A     SE  + + L+ L +AG+V + R
Sbjct: 259 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 311


>gi|145294383|ref|YP_001137204.1| hypothetical protein cgR_0338 [Corynebacterium glutamicum R]
 gi|140844303|dbj|BAF53302.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 91

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +R+L + A     P  ++++ E   +S+  +   L+ +  AG++
Sbjct: 20 LRILSHLAAEGCTPTTVNELTEIMGLSQPTISHHLKKMTDAGLL 63


>gi|19551512|ref|NP_599514.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62389159|ref|YP_224561.1| hypothetical protein cg0317 [Corynebacterium glutamicum ATCC
          13032]
 gi|21323025|dbj|BAB97654.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41324492|emb|CAF18832.1| unnamed protein product [Corynebacterium glutamicum ATCC 13032]
          Length = 115

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +R+L + A     P  ++++ E   +S+  +   L+ +  AG++
Sbjct: 44 LRILSHLAAEGCTPTTVNELTEIMGLSQPTISHHLKKMTDAGLL 87


>gi|158313195|ref|YP_001505703.1| GntR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108600|gb|ABW10797.1| transcriptional regulator, GntR family [Frankia sp. EAN1pec]
          Length = 130

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L  +    +RV  Y     D   RI ++ E+  I+   + K  + L   G+V+   G
Sbjct: 16 MQLVSQVRQALRV-GYL-EPGDQLPRIREVTESLAINPNTVLKAYRELEHEGLVKGRPG 72


>gi|169630016|ref|YP_001703665.1| GntR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169241983|emb|CAM63011.1| Putative transcriptional regulator, GntR family [Mycobacterium
          abscessus]
          Length = 236

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          R ++  A        I ++A+   IS + + + L+ LV  G+V+      GG R+ +
Sbjct: 32 RAILDGAAPPGSMIPIGEVADTYQISPIPVREALKTLVAEGLVD--HRANGGYRVAQ 86


>gi|158422893|ref|YP_001524185.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
          571]
 gi|158329782|dbj|BAF87267.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
          571]
          Length = 118

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   +R++    I          I+EA   S   L   L+ L  AG+V + R
Sbjct: 13 LSQETR--LRIVRRLVIAGPDGISAGAISEAVGASMSTLSFHLKELEHAGLVRSRR 66


>gi|88604169|ref|YP_504347.1| signal transduction protein [Methanospirillum hungatei JF-1]
 gi|88189631|gb|ABD42628.1| putative signal transduction protein with CBS domains
          [Methanospirillum hungatei JF-1]
          Length = 292

 Score = 38.8 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+        P +  +IA+    +   +   +Q L   G+V+ + G +GG 
Sbjct: 11 LITLISLYEKKSLPIKGEEIADIILRNPGTVRNQMQALKAIGLVDGIPGPKGGY 64


>gi|261405488|ref|YP_003241729.1| GntR family transcriptional regulator with LacI sensor
          [Paenibacillus sp. Y412MC10]
 gi|261281951|gb|ACX63922.1| transcriptional regulator, GntR family with LacI sensor
          [Paenibacillus sp. Y412MC10]
          Length = 363

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +          +IA+   +S   + +    L K G +E ++G+       R  +
Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPE 76


>gi|15838933|ref|NP_299621.1| heat-inducible transcription repressor [Xylella fastidiosa 9a5c]
 gi|9107513|gb|AAF85141.1|AE004044_12 heat-inducible transcriptional repressor [Xylella fastidiosa
          9a5c]
          Length = 367

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56
          L  R+   +R L+ C I N  P     +A+     IS   +  IL  L + G++ +
Sbjct: 27 LDSRSRQLLRTLISCYIQNGEPVGSKTLAQQAGLDISPATIRNILADLEELGLLNS 82


>gi|330507475|ref|YP_004383903.1| hypothetical protein MCON_1421 [Methanosaeta concilii GP-6]
 gi|328928283|gb|AEB68085.1| CBS domain pair protein/Domain of unknown function PF03444
           [Methanosaeta concilii GP-6]
          Length = 452

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +  L+     +    +  +I E    +   +   ++ L    +VE+V G RGG 
Sbjct: 172 LSTLVNLHRTDSRAVKAKEIGELMDRNPETIRIQMRSLKALNLVESVTGPRGGY 225


>gi|283851887|ref|ZP_06369164.1| ribonuclease BN [Desulfovibrio sp. FW1012B]
 gi|283572803|gb|EFC20786.1| ribonuclease BN [Desulfovibrio sp. FW1012B]
          Length = 451

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--RLCRPADQITILDVVKA 81
           P  +S++A    + E  L  + + L  AG+V       G     L R  + +T+ +V +A
Sbjct: 338 PPPVSRLAGLFGLPEPVLAGLWEDLATAGLVVEAASPDGRAFTSLAR-PEDVTVAEVARA 396

Query: 82  TE 83
            +
Sbjct: 397 LD 398


>gi|212224606|ref|YP_002307842.1| hypothetical protein TON_1455 [Thermococcus onnurineus NA1]
 gi|212009563|gb|ACJ16945.1| hypothetical protein TON_1455 [Thermococcus onnurineus NA1]
          Length = 169

 Score = 38.8 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
           ++  T   I +L+      + P   S+IA+   +S+  +   +  LVK GIVE  R G+ 
Sbjct: 73  ISTETRRKILLLLM-----EGPMGQSEIAKRLNLSQPTVSYHMGELVKLGIVEARREGKN 127

Query: 62  GGVRLCRPADQITILDVVK 80
               L      I    V++
Sbjct: 128 VIYTLTYDPAII--ARVIR 144


>gi|332158284|ref|YP_004423563.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
 gi|331033747|gb|AEC51559.1| putative protein replication factor C small subunit [Pyrococcus sp.
           NA2]
          Length = 1267

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPADQ--- 72
            A+  +      +I E   IS + L +IL  LV  G VE   RGR+   +L R   +   
Sbjct: 702 LALIGEEWTTKEEIQEKAKISIVRLNQILMNLVSKGYVEKKGRGRK---QLIRKLREGKA 758

Query: 73  ---ITILDVVKATEESFFV 88
              IT  D+ +  EE F +
Sbjct: 759 VKKIT--DIRRVLEEEFNM 775


>gi|312139021|ref|YP_004006357.1| DeoR family transcriptional regulator [Rhodococcus equi 103S]
 gi|311888360|emb|CBH47672.1| putative DeoR family transcriptional regulator [Rhodococcus equi
          103S]
          Length = 329

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          S +A+   IS   + + +  L + G  +    G  GG RL
Sbjct: 24 STLAQRLDISPRTVRRDIDRLREMGYAIHATMGPTGGYRL 63


>gi|116696415|ref|YP_841991.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530914|emb|CAJ97261.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 247

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H       +++A A  +S   + + +  L  AG VET RG  
Sbjct: 39 AHGQQLPTENELATAFDVSRNVVREAIARLKLAGYVETRRGTG 81


>gi|296284957|ref|ZP_06862955.1| putative transcriptional regulator, ArsR family protein
          [Citromicrobium bathyomarinum JL354]
          Length = 108

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +      R++ +AE   +S+  L + L  +   G+V++ R
Sbjct: 34 RLMVMCKLAEHGEMRVNALAEEVGLSQSALSQHLAKMRAEGLVDSRR 80


>gi|296135526|ref|YP_003642768.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12]
 gi|295795648|gb|ADG30438.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12]
          Length = 114

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
           R+L+ C I+      +S +  AC +S+  L + L  L   G+V+T R G+R    L  PA
Sbjct: 34  RLLILCQINRGEIC-VSDLEVACDVSQPTLSQQLTVLRAQGLVKTRREGKRVYYSLASPA 92

Query: 71  DQ---ITILDVV 79
                +T+  + 
Sbjct: 93  ASAVLMTLYQIY 104


>gi|108797934|ref|YP_638131.1| helix-turn-helix, type 11 [Mycobacterium sp. MCS]
 gi|119867030|ref|YP_936982.1| helix-turn-helix, type 11 domain-containing protein
          [Mycobacterium sp. KMS]
 gi|108768353|gb|ABG07075.1| Helix-turn-helix, type 11 [Mycobacterium sp. MCS]
 gi|119693119|gb|ABL90192.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. KMS]
          Length = 317

 Score = 38.4 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++AE   ++   + + +  L   G  V   RG  GG +L 
Sbjct: 7  RVLQLLGLLQSRRVWSGEELAERLGVTTRSVRRDIDRLRDLGYPVAASRGHGGGYQLG 64


>gi|254465427|ref|ZP_05078838.1| transcriptional regulator, AsnC family [Rhodobacterales bacterium
          Y4I]
 gi|206686335|gb|EDZ46817.1| transcriptional regulator, AsnC family [Rhodobacterales bacterium
          Y4I]
          Length = 152

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 28/110 (25%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L +R     R+L       D     + +AEA  +S   L++ ++ L +AGI+E    R
Sbjct: 1  MKLDRRDR---RILTLL--QEDSRISNADLAEAVGMSPSALWRRVRALEEAGIIE----R 51

Query: 61 RG----------GVR------LCR-PADQITILDVVKATEESFFVAECFA 93
           G          G +      L R   D+  +++ ++A E S  V EC+A
Sbjct: 52 YGAVVNAPAMGLGFQAIVHVHLTRHDPDK--LVEFIRAVETSPLVQECYA 99


>gi|302530910|ref|ZP_07283252.1| predicted protein [Streptomyces sp. AA4]
 gi|302439805|gb|EFL11621.1| predicted protein [Streptomyces sp. AA4]
          Length = 322

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L++  +H      + ++A    ++E  L + L  L +AG+ + +  GR GG+RL
Sbjct: 6  LVALLF-TLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRL 61


>gi|325972818|ref|YP_004249009.1| AraC family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324028056|gb|ADY14815.1| transcriptional regulator, AraC family [Spirochaeta sp. Buddy]
          Length = 1064

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 12   RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            R ++Y   H   P    Q+AEA  +SE +L +I + 
Sbjct: 965  RAIVYLGEHATTPISRWQLAEAVNVSEDYLTRIFRK 1000


>gi|164686640|ref|ZP_02210668.1| hypothetical protein CLOBAR_00233 [Clostridium bartlettii DSM
          16795]
 gi|164604369|gb|EDQ97834.1| hypothetical protein CLOBAR_00233 [Clostridium bartlettii DSM
          16795]
          Length = 327

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
           +      Q+++   IS   ++K +  L + G  +E+V  +  G RL    D I
Sbjct: 15 GENFMSGEQLSKKLGISRTAVWKHINALREEGYNIESVNKK--GYRLAEKPDDI 66


>gi|49478520|ref|YP_038136.1| GntR family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|229093135|ref|ZP_04224257.1| Acetoin transport repressor [Bacillus cereus Rock3-42]
 gi|49330076|gb|AAT60722.1| transcriptional regulator, GntR family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|228690284|gb|EEL44077.1| Acetoin transport repressor [Bacillus cereus Rock3-42]
          Length = 139

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 31 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 73


>gi|30022163|ref|NP_833794.1| acetoin transport repressor [Bacillus cereus ATCC 14579]
 gi|29897720|gb|AAP10995.1| Acetoin transport repressor [Bacillus cereus ATCC 14579]
          Length = 141

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 33 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 75


>gi|266620920|ref|ZP_06113855.1| putative trehalose operon repressor [Clostridium hathewayi DSM
          13479]
 gi|288867439|gb|EFC99737.1| putative trehalose operon repressor [Clostridium hathewayi DSM
          13479]
          Length = 254

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              N       ++AE+  +S + + + +  L K G++   RGR 
Sbjct: 32 LVDENGKLPAEKELAESYKVSRVTMRQAIAELEKDGLIVRYRGRG 76


>gi|300780362|ref|ZP_07090218.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
          33030]
 gi|300534472|gb|EFK55531.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
          33030]
          Length = 135

 Score = 38.4 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 15 MYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M  A+         S++AE   +++  L + +  L   G  VE   G  GG +L
Sbjct: 1  MLLALLQTGQTFTGSELAERIGVNDRTLRRYIGELGALGFEVEGRPGFYGGYQL 54


>gi|332686446|ref|YP_004456220.1| cytosolic protein containing multiple CBS domains [Melissococcus
           plutonius ATCC 35311]
 gi|332370455|dbj|BAK21411.1| cytosolic protein containing multiple CBS domains [Melissococcus
           plutonius ATCC 35311]
          Length = 441

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 26/127 (20%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILDV 78
               +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +V
Sbjct: 19  ERISVRSIAKNLGVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIERLTFGEV 77

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLVR 132
           VK  E                 L G+ GL  VL K         A    +T  S+  +V 
Sbjct: 78  VKIIEGDV--------------LGGTAGLNKVLDKFVIGAMTEKAMARYITPGSL-MIVG 122

Query: 133 NRSSIKK 139
           NR  I+K
Sbjct: 123 NRQEIQK 129


>gi|271966100|ref|YP_003340296.1| GntR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270509275|gb|ACZ87553.1| GntR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R+L       D     + +     ++   + + ++ L   G+VE   G  GG+ +  PA 
Sbjct: 24  RILSGEWAQGDRLGTRADLRVKYGVAAATVSETVRMLEARGLVEARPGNGGGIFVSEPAA 83

Query: 72  QITILD-VVKATEESFFVAECFA 93
            + +   V++   E   VA+C A
Sbjct: 84  FVRLGHKVLELHSEPITVADCLA 106


>gi|307266549|ref|ZP_07548081.1| transcriptional regulator, MarR family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|326390134|ref|ZP_08211695.1| regulatory protein MarR [Thermoanaerobacter ethanolicus JW 200]
 gi|306918403|gb|EFN48645.1| transcriptional regulator, MarR family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|325993782|gb|EGD52213.1| regulatory protein MarR [Thermoanaerobacter ethanolicus JW 200]
          Length = 146

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          V+M  + + + P  +  IA    IS   L  I+  LV+ G+V+
Sbjct: 44 VIMVLSENKNTPIYMKDIASELDISPSTLTSIVDKLVEKGLVQ 86


>gi|170739533|ref|YP_001768188.1| Crp/FNR family transcriptional regulator [Methylobacterium sp.
           4-46]
 gi|168193807|gb|ACA15754.1| transcriptional regulator, Crp/Fnr family [Methylobacterium sp.
           4-46]
          Length = 263

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D P     +A+   +S + + ++LQ L + G++ ++RG R
Sbjct: 203 QYDLPLTQVDLADTLGLSYVHVNRVLQALRRDGLI-SLRGPR 243


>gi|294339655|emb|CAZ88015.1| putative transcriptional regulator (ArsR family) [Thiomonas sp.
           3As]
          Length = 116

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
           R+L+ C I+      +S +  AC +S+  L + L  L   G+V+T R G+R    L  PA
Sbjct: 36  RLLILCQINRGEIC-VSDLEVACDVSQPTLSQQLTVLRAQGLVKTRREGKRVYYSLASPA 94

Query: 71  DQ---ITILDVV 79
                +T+  + 
Sbjct: 95  ASAVLMTLYQIY 106


>gi|284028159|ref|YP_003378090.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283807452|gb|ADB29291.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 312

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 17 CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           A    +P      +AE   ++E  + + +  L + G  ++   GR GG RL 
Sbjct: 11 LAQLQSHPGISAPGLAERLGVTERTVRRDIAQLRELGYRIDGEAGRTGGYRLA 63


>gi|182438502|ref|YP_001826221.1| IclR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|326779148|ref|ZP_08238413.1| transcriptional regulator, IclR family [Streptomyces cf. griseus
          XylebKG-1]
 gi|178467018|dbj|BAG21538.1| putative IclR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
 gi|326659481|gb|EGE44327.1| transcriptional regulator, IclR family [Streptomyces cf. griseus
          XylebKG-1]
          Length = 252

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y +RVL   + H +     ++I+    +    L  +L  L + G VE
Sbjct: 16 YALRVLETVSRHGNG-VTEARISRETGLPTGHLASLLLTLRREGYVE 61


>gi|188579452|ref|YP_001922897.1| Crp/Fnr family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179342950|gb|ACB78362.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium populi BJ001]
          Length = 263

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           P     +AE   +   +L + L+ L + G+++  RGR   + L RPA +
Sbjct: 172 PVTHEVLAELLGVQRSYLTRTLRTLQQQGLIQARRGRI--IILSRPAVE 218


>gi|46137631|ref|XP_390507.1| hypothetical protein FG10331.1 [Gibberella zeae PH-1]
          Length = 418

 Score = 38.4 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           R ++    + D    +S++A+   +  + L +I++ L   G V+
Sbjct: 95  RAMV---QNGDRGQSVSELADQTGVDPVLLARIMRHLAAMGYVD 135


>gi|324993073|gb|EGC24993.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK405]
 gi|324995621|gb|EGC27533.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK678]
          Length = 311

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          L       D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 7  LFDILSRADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|292386163|gb|ADE22342.1| transcriptional regulator [Streptomyces galbus]
          Length = 279

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           L+   A   + P+R+ Q+AE   +    ++++LQ LV  G V T
Sbjct: 35 ALLELLAGRGEQPSRLDQLAEELDVPRSSMYQLLQTLVDCGWVRT 79


>gi|311280640|ref|YP_003942871.1| transcriptional regulator, GntR family with aminotransferase
          domain [Enterobacter cloacae SCF1]
 gi|308749835|gb|ADO49587.1| transcriptional regulator, GntR family with aminotransferase
          domain [Enterobacter cloacae SCF1]
          Length = 475

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+ +  P    ++A A  IS   L   L  L   G + +  G  
Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAGALNISRTTLASALAQLRDEGYIASRHGSG 87


>gi|295134130|ref|YP_003584806.1| transcriptional regulator MarR family protein [Zunongwangia
          profunda SM-A87]
 gi|294982145|gb|ADF52610.1| transcriptional regulator, MarR family protein [Zunongwangia
          profunda SM-A87]
          Length = 161

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 22/45 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +++  +       + QIAE   +S   + +++  + K G + +V+
Sbjct: 46 MIFLLLQKHEKLTVMQIAEKLHLSHPAIVQLVDKMKKKGYINSVK 90


>gi|297200335|ref|ZP_06917732.1| DeoR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|197709450|gb|EDY53484.1| DeoR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 323

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  VE  +G  GG RL      P 
Sbjct: 26 ELADRLQVSRRTVRRDIDRLRELGYPVEASKGSDGGYRLVAGKAMPP 72


>gi|23099219|ref|NP_692685.1| biotin [acetyl-CoA carboxylase] ligase [Oceanobacillus iheyensis
          HTE831]
 gi|22777448|dbj|BAC13720.1| biotin [acetyl-CoA carboxylase] ligase : transcriptional
          repressor of the biotin operon [Oceanobacillus
          iheyensis HTE831]
          Length = 328

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           + +++      +++E   IS   ++K ++ L K G V   + R+G  R+ +  ++I+
Sbjct: 12 LSSNHEDYASGQRLSELLSISRNAVWKHMKELEKDGYVIEAKPRKG-YRIIKSPNKIS 68


>gi|302538986|ref|ZP_07291328.1| helix-turn-helix domain-containing protein [Streptomyces sp. C]
 gi|302447881|gb|EFL19697.1| helix-turn-helix domain-containing protein [Streptomyces sp. C]
          Length = 315

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +       + ++A    +SE    + L+ L  +GI V + RGR GG  L
Sbjct: 13 LQERGRVTVPEVAAELEVSERTARRDLEALAASGIPVYSQRGRGGGWSL 61


>gi|70725746|ref|YP_252660.1| hypothetical protein SH0745 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68446470|dbj|BAE04054.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          I   +    S++A+   +S   + + +  L   G+ +   +G+ GG ++ +  D+I +
Sbjct: 15 IQQGHTINASELAQHLNVSVRTISRDIVDLENQGVQIYAHKGKNGGYQIQKSEDKIKL 72


>gi|167749844|ref|ZP_02421971.1| hypothetical protein EUBSIR_00812 [Eubacterium siraeum DSM 15702]
 gi|167657156|gb|EDS01286.1| hypothetical protein EUBSIR_00812 [Eubacterium siraeum DSM 15702]
          Length = 154

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          RVLMY A   D     + + +  CIS+  +  +++ L K+G +
Sbjct: 39 RVLMYIANSPDKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81


>gi|159905976|ref|YP_001549638.1| BadM/Rrf2 family transcriptional regulator [Methanococcus
          maripaludis C6]
 gi|159887469|gb|ABX02406.1| transcriptional regulator, BadM/Rrf2 family [Methanococcus
          maripaludis C6]
          Length = 144

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+   ++L       +  +   +IA         + + ++ L   G VET +G+
Sbjct: 1  MKIDGLTE---KILTLL----EKYSTTREIAGVLETHPKNIDRYIRVLRDLGFVETKKGK 53

Query: 61 RGGVRLC 67
           GGV L 
Sbjct: 54 TGGVFLT 60


>gi|54301936|ref|YP_131929.1| putative melibiose operon regulatory protein [Photobacterium
          profundum SS9]
 gi|46915356|emb|CAG22129.1| putative melibiose operon regulatory protein [Photobacterium
          profundum SS9]
          Length = 168

 Score = 38.4 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 3  LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
          L+K +  Y  ++L Y A H+D P  + QIA+   +   +   I Q +
Sbjct: 26 LSKHSQFYVSQMLEYIATHHDTPLTVKQIADHVGLHANYAMGIFQRM 72


>gi|153010865|ref|YP_001372079.1| GntR family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151562753|gb|ABS16250.1| transcriptional regulator, GntR family [Ochrobactrum anthropi
          ATCC 49188]
          Length = 256

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 1  MHLTKRTDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L +  +  IR   L+      +       IAE   IS + + K +  LVKAG++    
Sbjct: 26 MQLRQSLETAIRAGQLVD----GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRH 81

Query: 59 GRR 61
          G  
Sbjct: 82 GSG 84


>gi|99080208|ref|YP_612362.1| ROK domain-containing protein [Ruegeria sp. TM1040]
 gi|99036488|gb|ABF63100.1| ROK domain protein [Ruegeria sp. TM1040]
          Length = 413

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62
          R+L+   +H       S++A    +S   +  IL+ L + G+V   E+ +GR G
Sbjct: 37 RLLLTL-LHQGGALPGSEMARRTGLSSQTVSVILRKLEQDGLVLRGESQKGRVG 89


>gi|302523802|ref|ZP_07276144.1| predicted protein [Streptomyces sp. AA4]
 gi|302432697|gb|EFL04513.1| predicted protein [Streptomyces sp. AA4]
          Length = 314

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 17 CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           A+    P    + +A    ++E    + +  L + G  ++   GR GG RL 
Sbjct: 11 LALLQARPGISATDLAARLGVTERTTRRDIAQLRELGYRIDGEPGRVGGYRLA 63


>gi|256372737|ref|YP_003110561.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM
          10331]
 gi|256009321|gb|ACU54888.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM
          10331]
          Length = 138

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           VL+  A       RI  IAE   I+E     I+  L++AG V   R
Sbjct: 36 HVLVCIARDPG--IRIRDIAERVGITERAAQGIVADLIRAGYVVRTR 80


>gi|108799029|ref|YP_639226.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868144|ref|YP_938096.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126434632|ref|YP_001070323.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108769448|gb|ABG08170.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS]
 gi|119694233|gb|ABL91306.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS]
 gi|126234432|gb|ABN97832.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS]
          Length = 112

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          R+ +  ++H      +S +A A   SE  + + L+ L + G V + R GR    RL
Sbjct: 40 RLEILLSLHRAPGICVSDLAAALGRSENAVSQALRVLRQQGWVSSTRVGRAVSYRL 95


>gi|290961059|ref|YP_003492241.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260650585|emb|CBG73701.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 333

 Score = 38.4 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61


>gi|294495219|ref|YP_003541712.1| hypothetical protein Mmah_0540 [Methanohalophilus mahii DSM 5219]
 gi|292666218|gb|ADE36067.1| hypothetical protein Mmah_0540 [Methanohalophilus mahii DSM 5219]
          Length = 66

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           +D P R  ++AEA  I +  + K +  L K G+V +
Sbjct: 19 ESDKPMRSGEVAEAADIDKKVVSKTITKLKKKGLVCS 55


>gi|226354922|ref|YP_002784662.1| transcriptional regulator [Deinococcus deserti VCD115]
 gi|226316912|gb|ACO44908.1| putative transcriptional regulator [Deinococcus deserti VCD115]
          Length = 318

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +RVL    +         +++A    +S   + + +  L   GI VE  RG  G   L
Sbjct: 5  SMRVLTVLELLQARESVTGAELARRLEVSPRTVQRYVTRLQDLGIPVEGRRGVGGAYCL 63


>gi|239504092|ref|ZP_04663402.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|193076797|gb|ABO11517.2| GntR-family transcriptional regulator [Acinetobacter baumannii
          ATCC 17978]
          Length = 239

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|159039896|ref|YP_001539149.1| helix-turn-helix type 11 domain-containing protein [Salinispora
          arenicola CNS-205]
 gi|157918731|gb|ABW00159.1| Helix-turn-helix type 11 domain protein [Salinispora arenicola
          CNS-205]
          Length = 320

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            S++A    +S   +   +  L   G  V+   G  GG RL 
Sbjct: 22 TSSELAGRLGVSTRTVRADIGKLRSLGYPVDARPGVAGGYRLA 64


>gi|118479280|ref|YP_896431.1| GntR family transcriptional regulator [Bacillus thuringiensis str.
           Al Hakam]
 gi|118418505|gb|ABK86924.1| transcriptional regulator, GntR family [Bacillus thuringiensis str.
           Al Hakam]
          Length = 168

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 60  APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 102


>gi|152967681|ref|YP_001363465.1| MarR family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151362198|gb|ABS05201.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
          SRS30216]
          Length = 153

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A+  + P  +  ++EA  +    L  +L+ L  AG++E  R
Sbjct: 47 LVMLALWGNEPLSVKDLSEALQLDPPTLSPLLKRLEAAGLLERRR 91


>gi|71276147|ref|ZP_00652427.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Dixon]
 gi|71900372|ref|ZP_00682506.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Ann-1]
 gi|170730626|ref|YP_001776059.1| heat-inducible transcription repressor [Xylella fastidiosa M12]
 gi|24212659|sp|Q9PB03|HRCA_XYLFA RecName: Full=Heat-inducible transcription repressor hrcA
 gi|238687927|sp|B0U3K0|HRCA_XYLFM RecName: Full=Heat-inducible transcription repressor hrcA
 gi|71163065|gb|EAO12787.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Dixon]
 gi|71729875|gb|EAO31972.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Ann-1]
 gi|167965419|gb|ACA12429.1| heat-inducible transcriptional repressor [Xylella fastidiosa M12]
          Length = 349

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56
          L  R+   +R L+ C I N  P     +A+     IS   +  IL  L + G++ +
Sbjct: 9  LDSRSRQLLRTLISCYIQNGEPVGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64


>gi|331694015|ref|YP_004330254.1| IclR family transcriptional regulator [Pseudonocardia
          dioxanivorans CB1190]
 gi|326948704|gb|AEA22401.1| transcriptional regulator, IclR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 262

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRL 66
           +RV+   A   D       IA         ++++L  LV+ G +   + VRG   G R+
Sbjct: 15 ALRVVDAVAAAGDG-VTAKAIARRLGSPLPTIYRVLATLVEEGYLVRMQDVRGYGLGYRV 73

Query: 67 CR 68
            
Sbjct: 74 AE 75


>gi|260557422|ref|ZP_05829637.1| GntR-family transcriptional regulator [Acinetobacter baumannii
          ATCC 19606]
 gi|260409048|gb|EEX02351.1| GntR-family transcriptional regulator [Acinetobacter baumannii
          ATCC 19606]
          Length = 239

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|255605727|ref|XP_002538438.1| Nodulation protein nolR, putative [Ricinus communis]
 gi|223512134|gb|EEF23945.1| Nodulation protein nolR, putative [Ricinus communis]
          Length = 82

 Score = 38.4 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---------GRRGGVRLC 67
           +I ++   R+S++ E   IS+  L + L  L + G+V T R         G  G ++L 
Sbjct: 10 LSIISNEEIRVSELGERLEISQSALSQHLSILREGGLVVTRREAQSIFYSTGHPGVLKLL 69

Query: 68 RPADQI 73
          R    I
Sbjct: 70 RSLKDI 75


>gi|322412753|gb|EFY03661.1| hypothetical protein SDD27957_10390 [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 149

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL++ + H D    +  I +   IS+     +++ +VK G ++
Sbjct: 37 HVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK 80


>gi|301055573|ref|YP_003793784.1| GntR family transcriptional regulator [Bacillus anthracis CI]
 gi|300377742|gb|ADK06646.1| transcriptional regulator, GntR family [Bacillus cereus biovar
          anthracis str. CI]
          Length = 141

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++A    I+   + K  Q L + GI+ET+RG+ 
Sbjct: 33 APSDKLPSVRELASLLVINPNTVSKAYQELERQGIIETLRGKG 75


>gi|169244310|gb|ACA50468.1| IclR family regulatory protein [Pseudomonas fluorescens]
          Length = 263

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI---TILD 77
           ++    +S IA    +    + +I+  L +  +VE++ G  GG RL     Q+   T  D
Sbjct: 30  SNGGLSLSAIANIVKLPRSTVHRIIVALEEEHLVESI-GPSGGFRLGHALGQLIHETQAD 88

Query: 78  VVKATEESFFVAECFASHKIDC 99
           ++ +  E      C    +  C
Sbjct: 89  IISSVREYLD-NLCAQVRESVC 109


>gi|163846131|ref|YP_001634175.1| helix-turn-helix type 11 domain-containing protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222523869|ref|YP_002568339.1| Helix-turn-helix type 11 domain-containing protein [Chloroflexus
          sp. Y-400-fl]
 gi|163667420|gb|ABY33786.1| Helix-turn-helix type 11 domain protein [Chloroflexus aurantiacus
          J-10-fl]
 gi|222447748|gb|ACM52014.1| Helix-turn-helix type 11 domain protein [Chloroflexus sp.
          Y-400-fl]
          Length = 96

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR------GGVR 65
          VL+  A +        +IA    I+E  + +IL  L +AG +  VR GR       G   
Sbjct: 12 VLLCIARNP--RVTAQEIARTIGITERAVQRILHDLHEAGYISHVREGRHNHYTIYGDQP 69

Query: 66 LCRPADQ-ITILDVVKAT 82
          L  P  Q IT+ +++ A 
Sbjct: 70 LRHPTVQNITVRELLAAL 87


>gi|315503586|ref|YP_004082473.1| helix-turn-helix type 11 domain protein [Micromonospora sp. L5]
 gi|315410205|gb|ADU08322.1| helix-turn-helix type 11 domain protein [Micromonospora sp. L5]
          Length = 330

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +      +++A    +SE  +++ +  L  AG+ V   RGR GG RL
Sbjct: 9  LVLLLQSRETMTAAELARELEVSERTVYRDVLALSAAGVPVYADRGRAGGYRL 61


>gi|284042196|ref|YP_003392536.1| hypothetical protein Cwoe_0728 [Conexibacter woesei DSM 14684]
 gi|283946417|gb|ADB49161.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM
          14684]
          Length = 320

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                  +++A     S   L + +  L + G  V   RG  G  RL 
Sbjct: 16 QTGRAWSGAELAGQLGTSPRSLRRDVTRLRELGYPVAAPRGPGGHYRLA 64


>gi|257792194|ref|YP_003182800.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|257476091|gb|ACV56411.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
          Length = 128

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    + +++    ++   + K+ Q L + G + T RGR 
Sbjct: 33 RGERLPSVRELSVQLGVNYNTINKVYQDLERDGYIFTKRGRG 74


>gi|257055826|ref|YP_003133658.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256585698|gb|ACU96831.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 211

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66
          +R+L   A H   P   +++AE    S       L+ L K G V     + RGR+   RL
Sbjct: 28 LRLLETLAEHG--PATATELAERVGESPSNCSWHLRQLGKHGFVASGTPSGRGRQRPWRL 85

Query: 67 CRPADQITILDV 78
               +I + +V
Sbjct: 86 V--PRRIQLDEV 95


>gi|271966637|ref|YP_003340833.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509812|gb|ACZ88090.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 318

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +R+L     H  +P    ++A+   +SE  L + +  L   G  V   RG  GG +L
Sbjct: 9  LRLLSLLQTHRHWPG--GELADRLGVSERALRRDIDRLRGLGYPVHAGRGLSGGYQL 63


>gi|162452903|ref|YP_001615270.1| DeoR family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
 gi|161163485|emb|CAN94790.1| putative DeoR-family transcriptional regulator [Sorangium
          cellulosum 'So ce 56']
          Length = 245

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 10 GIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +RV+      +       + ++A    +S   + + L  L + G+ +E   G  GG+RL
Sbjct: 4  ALRVMELSDL-LRARGATTVGELAATLGVSARTVRRDLATLRERGLDIEGEAGPGGGIRL 62

Query: 67 ----CRPADQITILDVV 79
                 A  +++ ++V
Sbjct: 63 DAGRGVTAVHLSVAEIV 79


>gi|222080918|ref|YP_002540281.1| L-asparagine operon transcriptional regulator (repressor) protein
          [Agrobacterium radiobacter K84]
 gi|221725597|gb|ACM28686.1| L-asparagine operon transcriptional regulator (repressor) protein
          [Agrobacterium radiobacter K84]
          Length = 251

 Score = 38.4 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++       +A +  IS   + + L+ L    ++ + RG  GG  + RP
Sbjct: 33 DERLPTEEDLARSFGISRPTVREALKRLAAQNLIHSRRGPLGGNFVMRP 81


>gi|323487835|ref|ZP_08093093.1| Adenosine deaminase [Planococcus donghaensis MPA1U2]
 gi|323398569|gb|EGA91357.1| Adenosine deaminase [Planococcus donghaensis MPA1U2]
          Length = 186

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           V+ Y   +      + QIA    +S  +L +I + 
Sbjct: 84  VMTYLTANYKERVSLQQIAHHVGMSPSYLERIFKQ 118


>gi|302560148|ref|ZP_07312490.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302477766|gb|EFL40859.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 324

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V    G  GG RL      P 
Sbjct: 26 ELADRLGVSRRTVRRDIDRLRELGYPVRATMGADGGYRLVAGKAMPP 72


>gi|184157451|ref|YP_001845790.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|332874087|ref|ZP_08442021.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6014059]
 gi|183209045|gb|ACC56443.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|323517344|gb|ADX91725.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737699|gb|EGJ68592.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6014059]
          Length = 239

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|167758617|ref|ZP_02430744.1| hypothetical protein CLOSCI_00957 [Clostridium scindens ATCC
          35704]
 gi|167663813|gb|EDS07943.1| hypothetical protein CLOSCI_00957 [Clostridium scindens ATCC
          35704]
          Length = 327

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          ++     +D      QI E   +S   ++K+++ L K G  +E VR +  G RL    D 
Sbjct: 5  ILRLLKSSDTYLSGQQICEQFQVSRTAVWKVMEQLKKEGYQIEAVRNK--GYRLVDSPDV 62

Query: 73 ITILDV 78
          ++  ++
Sbjct: 63 MSKAEI 68


>gi|152996724|ref|YP_001341559.1| regulatory protein ArsR [Marinomonas sp. MWYL1]
 gi|150837648|gb|ABR71624.1| regulatory protein ArsR [Marinomonas sp. MWYL1]
          Length = 306

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRPA-DQITI 75
          +H   P  ++ IA+   + +      +  L  AG++  E+ +GR+G  ++CR   ++I +
Sbjct: 32 LHEKGPMNVNDIADLLELPQSSTSSHINSLESAGLITTESQKGRKGSQKICRATHEEIVL 91


>gi|121605599|ref|YP_982928.1| regulatory proteins, IclR [Polaromonas naphthalenivorans CJ2]
 gi|120594568|gb|ABM38007.1| regulatory protein, IclR [Polaromonas naphthalenivorans CJ2]
          Length = 284

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +L   A H +    ++ IA+   I    + ++L  L + G V   R   G   L 
Sbjct: 11 ILELLAQHGEG-MEMAAIADQLDIPRSAVHRLLADLARCGYVRQTR-DHGDYLLT 63


>gi|320010255|gb|ADW05105.1| DeoR family transcriptional regulator [Streptomyces flavogriseus
          ATCC 33331]
          Length = 329

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++A    +S   + + +  L   G  VE  RG  GG RL      P 
Sbjct: 24 SELAGRLEVSPRTIRRDIDRLRDLGYPVEASRGSVGGYRLVAGTAMPP 71


>gi|302534567|ref|ZP_07286909.1| IclR family transcriptional regulator [Streptomyces sp. C]
 gi|302443462|gb|EFL15278.1| IclR family transcriptional regulator [Streptomyces sp. C]
          Length = 252

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          Y +RVL   + H      + QIA    +  + L  +L  L + G V
Sbjct: 16 YALRVLETISRHTGGVTDV-QIARETGLPAVHLAPMLLMLRREGYV 60


>gi|189466142|ref|ZP_03014927.1| hypothetical protein BACINT_02512 [Bacteroides intestinalis DSM
          17393]
 gi|189434406|gb|EDV03391.1| hypothetical protein BACINT_02512 [Bacteroides intestinalis DSM
          17393]
          Length = 247

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + +L   A        +S+IA++  ++      IL+ LV    VE + G + G +L   
Sbjct: 8  ALSILEVIASSPKEDLSLSEIADSLQLNHGTCANILKTLVNRNYVEQI-GAKKGYKLGYM 66

Query: 70 ADQIT 74
          A Q+T
Sbjct: 67 AYQLT 71


>gi|325271388|ref|ZP_08137916.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103510|gb|EGC00829.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 236

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 2  HLTKRTDYG---IRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +  RTDY     + L+      ++         +IAE   IS   + + L+ L K G+V
Sbjct: 22 RIQSRTDYVDEVYKALLDAISDGSLAPGARLTQEEIAEQMNISRSPVLQALRLLKKDGLV 81

Query: 55 ETVRGRR 61
          +   GR 
Sbjct: 82 QDAPGRG 88


>gi|251783369|ref|YP_002997674.1| hypothetical protein SDEG_1978 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242392001|dbj|BAH82460.1| hypothetical protein SDEG_1978 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|323128092|gb|ADX25389.1| hypothetical protein SDE12394_09845 [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 149

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL++ + H D    +  I +   IS+     +++ +VK G ++
Sbjct: 37 HVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK 80


>gi|168212698|ref|ZP_02638323.1| transcriptional regulator, GntR family [Clostridium perfringens
          CPE str. F4969]
 gi|170715746|gb|EDT27928.1| transcriptional regulator, GntR family [Clostridium perfringens
          CPE str. F4969]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|168209084|ref|ZP_02634709.1| transcriptional regulator, GntR family [Clostridium perfringens B
          str. ATCC 3626]
 gi|170712839|gb|EDT25021.1| transcriptional regulator, GntR family [Clostridium perfringens B
          str. ATCC 3626]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|168204433|ref|ZP_02630438.1| transcriptional regulator, GntR family [Clostridium perfringens E
          str. JGS1987]
 gi|170663925|gb|EDT16608.1| transcriptional regulator, GntR family [Clostridium perfringens E
          str. JGS1987]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|169342989|ref|ZP_02864017.1| transcriptional regulator, GntR family [Clostridium perfringens C
          str. JGS1495]
 gi|169298898|gb|EDS80972.1| transcriptional regulator, GntR family [Clostridium perfringens C
          str. JGS1495]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|110802639|ref|YP_697698.1| transcriptional regulator [Clostridium perfringens SM101]
 gi|110683140|gb|ABG86510.1| transcriptional regulator, GntR family [Clostridium perfringens
          SM101]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|110801281|ref|YP_694831.1| GntR family transcriptional regulator [Clostridium perfringens
          ATCC 13124]
 gi|168216527|ref|ZP_02642152.1| transcriptional regulator, GntR family [Clostridium perfringens
          NCTC 8239]
 gi|110675928|gb|ABG84915.1| transcriptional regulator, GntR family [Clostridium perfringens
          ATCC 13124]
 gi|182381333|gb|EDT78812.1| transcriptional regulator, GntR family [Clostridium perfringens
          NCTC 8239]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|18309368|ref|NP_561302.1| transcriptional regulator [Clostridium perfringens str. 13]
 gi|18144044|dbj|BAB80092.1| probable transcriptional regulator [Clostridium perfringens str.
          13]
          Length = 243

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N       ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 32 ENSRLPSEPELAKRLGVSRSTLRQALALLQDDGLIKNIRGKG 73


>gi|16082226|ref|NP_394674.1| transcription regulator LrpA related protein [Thermoplasma
          acidophilum DSM 1728]
 gi|10640529|emb|CAC12343.1| transcription regulator LrpA related protein [Thermoplasma
          acidophilum]
          Length = 176

 Score = 38.4 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          R L+   A++ +    I +I+    IS   + +I++ L   G ++       G  +    
Sbjct: 14 RELLVLRALYRNSRLSIEEISGETGISRNTVAQIIKKLENEGTIQ-------GYTVRMND 66

Query: 71 DQITILDVVKATEESFFVAE 90
          D+  +  V+        + +
Sbjct: 67 DK--LETVIAVVNGPIDIPD 84


>gi|302526568|ref|ZP_07278910.1| predicted protein [Streptomyces sp. AA4]
 gi|302435463|gb|EFL07279.1| predicted protein [Streptomyces sp. AA4]
          Length = 334

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L   A+    P   +++A    ++ +   K    L +AG+VE+ R
Sbjct: 270 RALHALAV----PRSTAELAGEIGVTPVAASKHTSVLRRAGLVESQR 312


>gi|227548799|ref|ZP_03978848.1| possible transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227079129|gb|EEI17092.1| possible transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 139

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81
           P+ + QI      S+  + + L+ L K+G+V+  R GR     L  PA    I+D++  
Sbjct: 19 SPHVVHQIVSKLEKSQPLISQHLRVLKKSGLVDATRAGREVVYSLAEPA----IIDIIFQ 74

Query: 82 TEESFFVAECFASHKID 98
                V  C      +
Sbjct: 75 L-ADLAVVHCAGEGNDE 90


>gi|108799593|ref|YP_639790.1| helix-turn-helix, type 11 [Mycobacterium sp. MCS]
 gi|119868703|ref|YP_938655.1| helix-turn-helix, type 11 domain-containing protein
          [Mycobacterium sp. KMS]
 gi|108770012|gb|ABG08734.1| Helix-turn-helix, type 11 [Mycobacterium sp. MCS]
 gi|119694792|gb|ABL91865.1| Helix-turn-helix, type 11 domain protein [Mycobacterium sp. KMS]
          Length = 230

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68
          +  L+     +  P   +++A+   +S+  + + +Q L  AG+ +    G  GG  + R 
Sbjct: 7  LYALVDLLRGSRRPLSAARLADEFEVSKRTIERDIQSLQLAGVPIYADHGVSGGYSILRE 66

Query: 69 ---PADQITI 75
             P   +T+
Sbjct: 67 HSLPPLNLTV 76


>gi|27378925|ref|NP_770454.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352075|dbj|BAC49079.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 282

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + P    QI EA  I+ +   ++++ L + GIVE  RGR
Sbjct: 218 EMPLTQEQIGEALGITAVHANRVIKQLRQEGIVEFQRGR 256


>gi|302870137|ref|YP_003838774.1| helix-turn-helix type 11 domain-containing protein
          [Micromonospora aurantiaca ATCC 27029]
 gi|302572996|gb|ADL49198.1| helix-turn-helix type 11 domain protein [Micromonospora
          aurantiaca ATCC 27029]
          Length = 330

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +      +++A    +SE  +++ +  L  AG+ V   RGR GG RL
Sbjct: 9  LVLLLQSRETMTAAELARELEVSERTVYRDVLALSAAGVPVYADRGRAGGYRL 61


>gi|313144411|ref|ZP_07806604.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129442|gb|EFR47059.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 183

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 12  RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +VL Y + + D  + ++Q  IA A  I+   L + L+ L   GI+ T +G+
Sbjct: 129 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKTLKAQGILTTHKGK 179


>gi|293605806|ref|ZP_06688179.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292815801|gb|EFF74909.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 280

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 10 GIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +R L+   + A    +P  ++Q+A+   + +  L ++L  + +AG V   
Sbjct: 32 SLRALIVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGFVAAT 81


>gi|284041755|ref|YP_003392095.1| hypothetical protein Cwoe_0284 [Conexibacter woesei DSM 14684]
 gi|283945976|gb|ADB48720.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM
          14684]
          Length = 332

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +AE   ++   + + +  L + G  V+  RG  GG RL   A+
Sbjct: 22 SGTDLAERLDVTTRTVRRDVDKLRELGYPVDATRGVAGGYRLGAGAE 68


>gi|302547934|ref|ZP_07300276.1| IclR family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302465552|gb|EFL28645.1| IclR family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 247

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +R+L   A H   P  + ++ +   + +  + + L  L +AG +   RG
Sbjct: 7  SLRILEAVAQHQ--PVTVGELTKIFGLPKSTVQRTLVTLNEAGWLRASRG 54


>gi|224437966|ref|ZP_03658908.1| hypothetical protein HcinC1_08333 [Helicobacter cinaedi CCUG 18818]
          Length = 190

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 12  RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +VL Y + + D  + ++Q  IA A  I+   L + L+ L   GI+ T +G+
Sbjct: 136 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKTLKAQGILTTHKGK 186


>gi|254391847|ref|ZP_05007041.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197705528|gb|EDY51340.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 119

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1  MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M LT          M    H    P   S++A     SE  + + L+ L +AG+V + R
Sbjct: 40 MALTSPAR------MELCRHLLGEPITTSELAARLGSSEPQVSRSLRILREAGLVRSTR 92


>gi|159897242|ref|YP_001543489.1| helix-turn-helix type 11 domain-containing protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159890281|gb|ABX03361.1| Helix-turn-helix type 11 domain protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 319

 Score = 38.4 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          + +    R +++A    IS+  + + +  L   GI VE  RG  G   L R
Sbjct: 15 LQSHQRMRGAELASRLEISQRTVRRYVVMLQDMGIPVEAERGPDGAYYLGR 65


>gi|290954987|ref|YP_003486169.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644513|emb|CBG67598.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 370

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 11  IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
           +R L          + ++ P    ++A    I+E  L K L+ L +AG+VE  R R G  
Sbjct: 285 LRALADDTRLRTLRLISEQPRSTQELAPLVGITEAGLSKQLRVLSEAGLVE--RRREGYY 342

Query: 65  RLCR 68
            L R
Sbjct: 343 VLYR 346


>gi|289207949|ref|YP_003460015.1| ribonuclease BN [Thioalkalivibrio sp. K90mix]
 gi|288943580|gb|ADC71279.1| ribonuclease BN [Thioalkalivibrio sp. K90mix]
          Length = 452

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 2   HLT--KRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
            L+   R   G+ ++            P  +  +A    +    L ++ Q L  AG++  
Sbjct: 315 RLSGAARERMGLHLMQQVGQRFLDGRSPPTLDHVAHDLSVPGNALGEVAQALESAGLL-- 372

Query: 57  VRGRRGG-----VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
               R G         R  ++I + ++++A  +        A  +    L G   + + L
Sbjct: 373 ---VRAGTDATCYVPGRDLERIRVDEILEALRQD-------ADARALRRLQGDPAVEATL 422

Query: 112 RKALNAFFDVLTQYSIECLVRNRSS 136
            +   A  D L   ++  L+++  +
Sbjct: 423 EELETARRDHLDGRTLRDLLKSEGA 447


>gi|213156131|ref|YP_002318551.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          AB0057]
 gi|215484134|ref|YP_002326359.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii
          AB307-0294]
 gi|301344961|ref|ZP_07225702.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii
          AB056]
 gi|301510279|ref|ZP_07235516.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii
          AB058]
 gi|301595336|ref|ZP_07240344.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii
          AB059]
 gi|332855259|ref|ZP_08435781.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6013150]
 gi|332867992|ref|ZP_08437964.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6013113]
 gi|213055291|gb|ACJ40193.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          AB0057]
 gi|213989122|gb|ACJ59421.1| Pyruvate dehydrogenase complex repressor [Acinetobacter baumannii
          AB307-0294]
 gi|332727551|gb|EGJ58974.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6013150]
 gi|332733621|gb|EGJ64781.1| transcriptional regulator, GntR family [Acinetobacter baumannii
          6013113]
          Length = 239

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|150399140|ref|YP_001322907.1| helix-turn-helix type 11 domain-containing protein [Methanococcus
          vannielii SB]
 gi|150011843|gb|ABR54295.1| Helix-turn-helix type 11 domain protein [Methanococcus vannielii
          SB]
          Length = 144

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +   T+  + +L       +      +IA         + + ++ L   G V+T +G+
Sbjct: 1  MKIDGITEQILTIL-------EKYTTTKEIAMELKTHPKNIDRYIRVLRDLGFVDTKKGK 53

Query: 61 RGGVRLC 67
           GGV L 
Sbjct: 54 TGGVFLT 60


>gi|108801153|ref|YP_641350.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870285|ref|YP_940237.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436987|ref|YP_001072678.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771572|gb|ABG10294.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS]
 gi|119696374|gb|ABL93447.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS]
 gi|126236787|gb|ABO00188.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS]
          Length = 117

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R+L+  +  + YP   S +AE   +S   L   L  L   G+V  V  GRR    L  P 
Sbjct: 29  RILLRLSRASGYP---SDLAEQLGVSRQILSNHLACLRGCGLVVAVPEGRRSRYELADP- 84

Query: 71  DQITILDVVKATEESFFVAE----CFASHKIDCP 100
               I   +          +    C       C 
Sbjct: 85  ---RIGAALDDLMGLVLAVDPNCCCTGDDGDGCR 115


>gi|71910853|ref|YP_282403.1| phage protein [Streptococcus pyogenes MGAS5005]
 gi|139473354|ref|YP_001128069.1| hypothetical protein SpyM50484 [Streptococcus pyogenes str.
          Manfredo]
 gi|71853635|gb|AAZ51658.1| phage protein [Streptococcus pyogenes MGAS5005]
 gi|134271600|emb|CAM29826.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 117

 Score = 38.4 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAG-IVETVRGRRGGVRLC-- 67
          R+  Y  I ++      +I     I     L  I+  +V  G ++ + R + GG  L   
Sbjct: 11 RIFCYLPIGSNMMVNSKEICRTFDIKDPKTLRDIIHGMVMKGYLIGSSRRKGGGYYLIDN 70

Query: 68 --RPADQITILD 77
              A+ I+ L+
Sbjct: 71 DDERAEAISSLE 82


>gi|310288071|ref|YP_003939330.1| transcription regulator ArsR [Bifidobacterium bifidum S17]
 gi|309252008|gb|ADO53756.1| transcription regulator ArsR [Bifidobacterium bifidum S17]
          Length = 201

 Score = 38.0 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66
          +R+L   +  +  P  + QIAE    S   +   L+ L KAG V       G       L
Sbjct: 37 LRILTVMS--DTEPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDGDNRRSYWL 94

Query: 67 C 67
           
Sbjct: 95 A 95


>gi|284989054|ref|YP_003407608.1| MarR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284062299|gb|ADB73237.1| transcriptional regulator, MarR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 171

 Score = 38.0 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 2   HLTKRTDYGIR-----------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
            +T+R D  +             L   A        + ++AEA  IS   +   +  LV 
Sbjct: 44  RITRRVDSALHRRHDLSLTGYEALRRIAEAPGERATMGEVAEALGISRAGVTSTVSRLVA 103

Query: 51  AGIVETVR 58
            G V   R
Sbjct: 104 EGYVVRER 111


>gi|330839241|ref|YP_004413821.1| biotin/acetyl-CoA-carboxylase ligase [Selenomonas sputigena ATCC
          35185]
 gi|329747005|gb|AEC00362.1| biotin/acetyl-CoA-carboxylase ligase [Selenomonas sputigena ATCC
          35185]
          Length = 326

 Score = 38.0 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L       +      +IA+   +S   ++K ++ L +AG     R R G   L    D
Sbjct: 4  RILELLRKAGEEYMSGEEIAKRLGVSRTAVWKHIKELREAGYGIKSRSRSG-YALEETPD 62


>gi|313634176|gb|EFS00831.1| MarR family transcriptional regulator [Listeria seeligeri FSL
           N1-067]
 gi|313638799|gb|EFS03879.1| MarR family transcriptional regulator [Listeria seeligeri FSL
           S4-171]
          Length = 156

 Score = 38.0 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66
           +  + Y A H+D  + ++++AEA  +++  + K+ + L++ G VE+ +          RL
Sbjct: 38  VHCMEYIAKHDD--SNVTKLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIYFRL 95

Query: 67  CRPADQIT 74
            +   +I 
Sbjct: 96  TKKGAEIN 103


>gi|307326305|ref|ZP_07605501.1| transcriptional regulator, MarR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306887968|gb|EFN18958.1| transcriptional regulator, MarR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 160

 Score = 38.0 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 26/130 (20%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           +  A+ +  P R S++A A  +    +   L+ L + G V  +R         R      
Sbjct: 50  LMMALWDAGPVRQSELARALDLDPSTVTLTLRRLEQGGYV--IR--------ARDPHDRR 99

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
           +  +V+A+EES+ +                  +  V  +      D L     E   R  
Sbjct: 100 V-MLVRASEESYALRP---------------KVAEVWGQLEEHILDGLDDAEREAFARLL 143

Query: 135 SSIKKIFNAG 144
           S ++K    G
Sbjct: 144 SKVEKNLAPG 153


>gi|297161193|gb|ADI10905.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 334

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          IR+++     +      +++A    +SE  + + +  L +AG+ V   RGR GG RL
Sbjct: 7  IRLVLLL--QSRPSMTGAELARELEVSERTVTRDVAALSEAGVPVYADRGRSGGYRL 61


>gi|316933157|ref|YP_004108139.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1]
 gi|315600871|gb|ADU43406.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1]
          Length = 118

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++    + H D    + +I +   I+   L   L  L   G+V++ R
Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70


>gi|229084451|ref|ZP_04216729.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44]
 gi|228698826|gb|EEL51533.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44]
          Length = 126

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D  + + ++A    ++   + +  Q L + GIV T RG  
Sbjct: 29 LPGDKISSVRELASELQVNPNTIQRTFQELERDGIVVTRRGMG 71


>gi|226306846|ref|YP_002766806.1| MarR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226185963|dbj|BAH34067.1| putative MarR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 178

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
           VL   +   D+  ++S +A+    S   L  ++  + KAG V  E +RG RG
Sbjct: 65  VLAALSDAPDHKLQLSVLAQRANASLSRLSHVVTKMEKAGWVKREVIRGSRG 116


>gi|83590159|ref|YP_430168.1| GntR family transcriptional regulator [Moorella thermoacetica
          ATCC 39073]
 gi|83573073|gb|ABC19625.1| transcriptional regulator, GntR family [Moorella thermoacetica
          ATCC 39073]
          Length = 243

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D     ++++E   +S + + + L  L +AG++ + +G+ 
Sbjct: 29 RPGDTLPSEAELSEKYGLSRMTVRRSLSQLARAGLIYSEQGKG 71


>gi|54024712|ref|YP_118954.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016220|dbj|BAD57590.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 320

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                S++A+   +S   +   +  L   G  V+   G  GG RL 
Sbjct: 18 GRDWTSSELADRLAVSTRTVRADIGKLRSLGYPVDARPGVAGGYRLA 64


>gi|313617821|gb|EFR90032.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
          Length = 141

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           L    DYG+RV    A+          +A+    S+ +  K+L  L + GI+E+ +
Sbjct: 63  LNTMIDYGLRV-SEKAVELPKFLTYQILADNSNTSKSYTSKVLSNLREKGILESQK 117


>gi|260886973|ref|ZP_05898236.1| biotin-[acetyl-CoA-carboxylase] ligase [Selenomonas sputigena
          ATCC 35185]
 gi|260863035|gb|EEX77535.1| biotin-[acetyl-CoA-carboxylase] ligase [Selenomonas sputigena
          ATCC 35185]
          Length = 328

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L       +      +IA+   +S   ++K ++ L +AG     R R G   L    D
Sbjct: 6  RILELLRKAGEEYMSGEEIAKRLGVSRTAVWKHIKELREAGYGIKSRSRSG-YALEETPD 64


>gi|302531523|ref|ZP_07283865.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302440418|gb|EFL12234.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 318

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
             +++E   +S   +   ++ L   G  VE  RG  GG RL 
Sbjct: 22 SGRELSERLGVSARTIRSDVERLRDLGYPVEATRGNVGGYRLG 64


>gi|229492612|ref|ZP_04386415.1| transcriptional regulator, GntR family [Rhodococcus erythropolis
           SK121]
 gi|229320598|gb|EEN86416.1| transcriptional regulator, GntR family [Rhodococcus erythropolis
           SK121]
          Length = 386

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              D      ++AE   +S   L  +L  L +AGI   + GR GG  + +          
Sbjct: 151 RPGDRLPSERELAEHFQVSRSTLRGVLTGLCQAGITHRLPGRAGGTFIAQ---------- 200

Query: 79  VKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFFDVL---TQYSIE 128
            +  E      +   S+        GS  L++VL+    +    L    Q S+ 
Sbjct: 201 -RKFERDLDRVDGLPSYLARQGMTSGSQVLSAVLQNPEQSIRIRLGLDDQTSLA 253


>gi|118472439|ref|YP_891061.1| transcription regulator [Mycobacterium smegmatis str. MC2 155]
 gi|16508062|gb|AAL17928.1| putative transcription regulator [Mycobacterium smegmatis str.
          MC2 155]
 gi|118173726|gb|ABK74622.1| putative transcription regulator [Mycobacterium smegmatis str.
          MC2 155]
          Length = 256

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          G+ VL   A     P  +  +A    +SE   F+ILQ L   G V    GR G  RL 
Sbjct: 8  GLHVLETLAGMR-QPATLRDVAARAGLSESNAFRILQALENEGYVH-HLGRSG-YRLA 62


>gi|119385928|ref|YP_916983.1| regulatory protein GntR, HTH [Paracoccus denitrificans PD1222]
 gi|119376523|gb|ABL71287.1| transcriptional regulator, GntR family [Paracoccus denitrificans
          PD1222]
          Length = 236

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R++        Y    +++ +   +S   L + L+ L   G++E   G  GG+ + RP  
Sbjct: 16 RIITDNLASGSYLGTEAELLQQFNVSRPTLRESLRILETQGVIELRPGPGGGIMITRPGT 75

Query: 72 QI 73
           I
Sbjct: 76 DI 77


>gi|312141915|ref|YP_004009251.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311891254|emb|CBH50573.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 127

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 39/134 (29%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-----------------TVR--G 59
                     QIA +   + + + ++L  L KAG+ +                   R  G
Sbjct: 9   RRGHEVTTSEQIATSVNTNPVVIRRLLSELRKAGLADSRRGRAGRSRGTWRRSPARRLPG 68

Query: 60  RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            R G  L RPA         + T+      EC   H           +T+V      A  
Sbjct: 69  DRTGTGL-RPAS--------RDTDP-----ECVVGHGSGP------AMTAVFDDVEAALR 108

Query: 120 DVLTQYSIECLVRN 133
             L + ++E ++R+
Sbjct: 109 RELAKTTLEDVLRD 122


>gi|302540245|ref|ZP_07292587.1| GntR family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302457863|gb|EFL20956.1| GntR family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 236

 Score = 38.0 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          G+R         D      ++AE   IS   + + +  L   G+VE  +G  GG+RL R 
Sbjct: 30 GLRA-------GDRLPTERELAERLGISRASVKQAIVVLEVQGLVEVRQG--GGMRLLRD 80


>gi|271966670|ref|YP_003340866.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270509845|gb|ACZ88123.1| putative transcriptional regulator, ArsR family [Streptosporangium
           roseum DSM 43021]
          Length = 337

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             R  +   I  D     S++A    +S     K  Q L  AG++ + R
Sbjct: 262 ATRAAILRTIAADQGCSTSELARRIGVSVSNASKHAQVLHHAGLITSTR 310


>gi|225848602|ref|YP_002728765.1| transcriptional regulator [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643529|gb|ACN98579.1| transcriptional regulator [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 264

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 6  RTDYGIR-------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++DY +        +L Y A       +   + E   +S   L KIL+ LV  G ++
Sbjct: 7  KSDYIVHNVDLAFDILFYIARKQS--VKTKDLEEKFNVSPTTLEKILETLVIRGYLD 61


>gi|116621700|ref|YP_823856.1| MarR family transcriptional regulator [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116224862|gb|ABJ83571.1| transcriptional regulator, MarR family with acetyltransferase
          activity [Candidatus Solibacter usitatus Ellin6076]
          Length = 317

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 7  TDYGI---RVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVE 55
          T+Y +   RVL   A   + P     +IA+   +   +L ++L  L +AG+++
Sbjct: 39 TEYSLAEARVLYELA---NRPAPAAKEIADELGMDAGYLSRLLGKLQRAGLLK 88


>gi|293608809|ref|ZP_06691112.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829382|gb|EFF87744.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 239

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|227874639|ref|ZP_03992802.1| possible transcriptional regulator [Mobiluncus mulieris ATCC
          35243]
 gi|269977560|ref|ZP_06184527.1| regulatory protein GntR, HTH [Mobiluncus mulieris 28-1]
 gi|306817925|ref|ZP_07451663.1| GntR family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|307701321|ref|ZP_07638342.1| transcriptional regulator, GntR family [Mobiluncus mulieris
          FB024-16]
 gi|227844848|gb|EEJ54994.1| possible transcriptional regulator [Mobiluncus mulieris ATCC
          35243]
 gi|269934163|gb|EEZ90730.1| regulatory protein GntR, HTH [Mobiluncus mulieris 28-1]
 gi|304649268|gb|EFM46555.1| GntR family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|307613482|gb|EFN92730.1| transcriptional regulator, GntR family [Mobiluncus mulieris
          FB024-16]
          Length = 125

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRG------------RRGGVRLCRPADQI 73
           + ++A A  ++   + K L  L + G+ ET RG            R  G RL   A +I
Sbjct: 34 SVRELAAAHGVNPNTVQKALVELERVGVAETRRGLGRYVTDNAAAIRSLGRRLACEAARI 93

Query: 74 TILD 77
           + D
Sbjct: 94 FVAD 97


>gi|325914744|ref|ZP_08177082.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
 gi|325539021|gb|EGD10679.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
          Length = 321

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
                  + +A    +    L + ++ L + G  V  V G  GG RL + A  + +L  
Sbjct: 16 QGGRNWSGAALAGRLEVHPRSLRRDIERLRELGYQVHAVPGSGGGYRLGQGAAALPLL-- 73

Query: 79 VKATEESFFVA 89
              EE   + 
Sbjct: 74 ---FEEEEALT 81


>gi|291484666|dbj|BAI85741.1| bifunctional protein BirA [Bacillus subtilis subsp. natto
          BEST195]
          Length = 325

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T R D     L+   +   +      +I++A   S   ++K ++ L K G  VE VR
Sbjct: 1  MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55

Query: 59 GRRGGVRLCRPA-----DQITIL 76
           +  G RL +        +I   
Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76


>gi|257868961|ref|ZP_05648614.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257803125|gb|EEV31947.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 243

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A  N       ++ E   +S   L + L  L K G +  ++GR 
Sbjct: 22 DLADRNGKLPSEKELMEHYQVSRYSLRQALSRLSKRGYIYQIQGRG 67


>gi|152986143|ref|YP_001349213.1| hypothetical protein PSPA7_3859 [Pseudomonas aeruginosa PA7]
 gi|150961301|gb|ABR83326.1| hypothetical protein PSPA7_3859 [Pseudomonas aeruginosa PA7]
          Length = 323

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI + + RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPIASERGRHGGYRL 63


>gi|41350168|gb|AAS00430.1| transcriptional regulator, GntR family [Saccharopolyspora spinosa
          NRRL 18395]
          Length = 246

 Score = 38.0 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++AE   +S   + +  Q LV  G+V  +RGR 
Sbjct: 36 AELAERYGLSRQTVRRAFQDLVSEGLVYRIRGRG 69


>gi|187479055|ref|YP_787080.1| IclR family transcriptional regulator [Bordetella avium 197N]
 gi|115423642|emb|CAJ50186.1| IclR-family transcriptional regulator [Bordetella avium 197N]
          Length = 251

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--LC 67
          G+ VL        +   ++ IA    I    ++++L  L +AG+V TV G +   R  L 
Sbjct: 17 GLAVLATLRDQGPHGLSVTDIARQTGIQRPTIYRLLAALREAGLVSTVHGTK-KYRAELG 75

Query: 68 RPADQIT 74
             D ++
Sbjct: 76 GEPDAVS 82


>gi|84684173|ref|ZP_01012075.1| regulatory proteins, IclR [Maritimibacter alkaliphilus HTCC2654]
 gi|84667926|gb|EAQ14394.1| regulatory proteins, IclR [Rhodobacterales bacterium HTCC2654]
          Length = 247

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +RVL   A   + P  +S +A    +    + + L   V AG+     G+ G   L   
Sbjct: 13 ALRVLEAMA-QANAPLSLSDLARRVDMPASKVHRYLASFVNAGL-AAQAGKSGKYDLG-- 68

Query: 70 ADQITIL 76
             I + 
Sbjct: 69 PGAIALG 75


>gi|328883284|emb|CCA56523.1| Transcriptional regulator, ArsR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 396

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P   S++A+A  I+   + + L  L KAG++ T R  RG   L
Sbjct: 334 GPYSTSELADAYGITAPEVSRHLSVLKKAGLLTTQR--RGRYVL 375


>gi|331699646|ref|YP_004335885.1| GntR domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326954335|gb|AEA28032.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 239

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-ADQ 72
          +         ++A    +S   L + L+ L  +G +E  RG  GG  +  P  ++
Sbjct: 36 VAGQRLPSEPELAGQLGVSRPMLREALKALEVSGYLEVRRGYGGGRFVAMPEPEE 90


>gi|226307008|ref|YP_002766968.1| arsenic resistance operon repressor ArsR [Rhodococcus
          erythropolis PR4]
 gi|226186125|dbj|BAH34229.1| putative arsenic resistance operon repressor ArsR [Rhodococcus
          erythropolis PR4]
          Length = 128

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+++  +S+  +   L+ L +AG+++  R
Sbjct: 42 LRLLSLVASHEGGEACVCDISDSFDLSQPTISHHLKVLRQAGLLDCER 89


>gi|126460243|ref|YP_001056521.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM
          11548]
 gi|126249964|gb|ABO09055.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM
          11548]
          Length = 248

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-----VRLCRP 69
          +Y A+    P    ++AEA  I    ++  L  L   G+V     + GG      R  RP
Sbjct: 20 IYVALVEQGPKSARELAEALGIPYTKIYTYLYKLENLGVVA----KEGGGRPYRYR-ARP 74

Query: 70 ADQI 73
            ++
Sbjct: 75 PAEV 78


>gi|52785729|ref|YP_091558.1| hypothetical protein BLi01972 [Bacillus licheniformis ATCC 14580]
 gi|52348231|gb|AAU40865.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 234

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          R +++  +  +      ++AE   IS   + + L+ L   G+VE V G
Sbjct: 37 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 84


>gi|330469443|ref|YP_004407186.1| AraC family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328812414|gb|AEB46586.1| AraC family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 288

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           + +   H D P  I+++A     SE    ++   L    + E VR R    RL   A +
Sbjct: 8  AMEHLEQHLDRPVEIAELARIAVTSEYHFRRLFSALAGIPLSEYVRRR----RLTMAAAE 63

Query: 73 I-----TILDV 78
          +     T+LD+
Sbjct: 64 VVSGERTLLDI 74


>gi|325121427|gb|ADY80950.1| GntR family transcriptional regulator, transcriptional repressor
          for pyruvate dehydrogenase complex [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 239

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|299771016|ref|YP_003733042.1| Pyruvate dehydrogenase complex repressor [Acinetobacter sp. DR1]
 gi|298701104|gb|ADI91669.1| Pyruvate dehydrogenase complex repressor [Acinetobacter sp. DR1]
          Length = 239

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|289750275|ref|ZP_06509653.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289690862|gb|EFD58291.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 535

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              +L     H    ++ ++I E   ++   + +IL  L   G+V + RG RG  RL   
Sbjct: 295 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVAS-RGARGPYRLGP- 351

Query: 70  ADQIT 74
             +IT
Sbjct: 352 --EIT 354


>gi|260428779|ref|ZP_05782756.1| histidine utilization repressor [Citreicella sp. SE45]
 gi|260419402|gb|EEX12655.1| histidine utilization repressor [Citreicella sp. SE45]
          Length = 245

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          + +AEA  +S + + K+L  L + G +  VR RRGG  + +P  Q  ++++
Sbjct: 37 TDLAEAHGVSRMTMNKVLTQLAQEGYL--VRRRRGGTFVAQPRAQSAVMEI 85


>gi|229489079|ref|ZP_04382945.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|229324583|gb|EEN90338.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 324

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   IS   + + +  L + G  +    G  GG RL
Sbjct: 25 LAERLDISHRTVRRDIDRLREMGYRIAATMGPDGGYRL 62


>gi|118431168|ref|YP_874841.1| hypothetical protein APE_0720a [Aeropyrum pernix K1]
 gi|116062492|dbj|BAF34744.1| hypothetical protein [Aeropyrum pernix K1]
          Length = 81

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R L +          + +I+++  I       ++Q L+   +V+  +  +G   L +  
Sbjct: 12 LRALRFL-REKPQGASLKEISDSLGIPPSSAHGLMQKLLALNLVD--KNGQGKYYLTKAG 68

Query: 71 DQI--TILDVV 79
          +Q+   I  ++
Sbjct: 69 EQVLEKIGAII 79


>gi|52080350|ref|YP_079141.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52003561|gb|AAU23503.1| probable transcriptional regulator [Bacillus licheniformis ATCC
          14580]
          Length = 220

 Score = 38.0 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          R +++  +  +      ++AE   IS   + + L+ L   G+VE V G
Sbjct: 23 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 70


>gi|302554242|ref|ZP_07306584.1| IclR-family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302471860|gb|EFL34953.1| IclR-family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 262

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           L+   A   + P+R+ Q+A+   +    ++++LQ LV +G V T
Sbjct: 18 ALLELLAGRGEEPSRLDQLAQDLGVPRSSMYQLLQTLVDSGWVRT 62


>gi|292493520|ref|YP_003528959.1| cyclic nucleotide-binding protein [Nitrosococcus halophilus Nc4]
 gi|291582115|gb|ADE16572.1| cyclic nucleotide-binding protein [Nitrosococcus halophilus Nc4]
          Length = 214

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 12  RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55
           R L+  A   D    I +      IA+    S   + +I+  L   G +E
Sbjct: 149 RTLLDLATEKDGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198


>gi|289434105|ref|YP_003463977.1| transcriptional regulator, MarR family [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170349|emb|CBH26889.1| transcriptional regulator, MarR family [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 156

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRL 66
           +  + Y A H D  + ++++AEA  +++  + K+ + L++ G VE+ +          RL
Sbjct: 38  VHCMEYIAKHED--SNVTKLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIYFRL 95

Query: 67  CRPADQIT 74
            +   +I 
Sbjct: 96  TKKGAEIN 103


>gi|192292445|ref|YP_001993050.1| MarR family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192286194|gb|ACF02575.1| transcriptional regulator, MarR family [Rhodopseudomonas
          palustris TIE-1]
          Length = 118

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++    + H D    + +I +   I+   L   L  L   G+V++ R
Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70


>gi|39936623|ref|NP_948899.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|39650479|emb|CAE29002.1| transcriptional regulator, ArsR family [Rhodopseudomonas
          palustris CGA009]
          Length = 118

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 11 IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++    + H D    + +I +   I+   L   L  L   G+V++ R
Sbjct: 23 LRIMRTLLSAHPDGLV-VGEIGDELGIAPSTLSHHLDKLKNEGLVQSRR 70


>gi|239833844|ref|ZP_04682172.1| transcriptional regulator, GntR family [Ochrobactrum intermedium
          LMG 3301]
 gi|239821907|gb|EEQ93476.1| transcriptional regulator, GntR family [Ochrobactrum intermedium
          LMG 3301]
          Length = 256

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 1  MHLTKRTDYGIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L +  +  IR   L+      +       IAE   IS + + K +  LVKAG++    
Sbjct: 26 MQLRQSLEAAIRAGQLVD----GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRH 81

Query: 59 GRR 61
          G  
Sbjct: 82 GSG 84


>gi|271968984|ref|YP_003343180.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270512159|gb|ACZ90437.1| putative transcriptional regulator, ArsR family [Streptosporangium
           roseum DSM 43021]
          Length = 333

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R+L   A  ND     S++A    IS        Q L +AG++ + R
Sbjct: 265 RILRCVATTND--CTTSELARRTGISLSSASAHAQVLRRAGLITSTR 309


>gi|229490283|ref|ZP_04384125.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|229322815|gb|EEN88594.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 321

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R L   ++   +     +++A    +++  + + +  L   G  V++  G+ GG RL 
Sbjct: 8  RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRDLGYPVDSTSGKYGGYRLA 65


>gi|16079301|ref|NP_390125.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310160|ref|ZP_03592007.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314482|ref|ZP_03596287.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221319404|ref|ZP_03600698.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221323680|ref|ZP_03604974.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|317374856|sp|P0CI75|BIRA_BACSU RecName: Full=Bifunctional protein BirA; Includes: RecName:
          Full=Biotin operon repressor; Includes: RecName:
          Full=Biotin--[acetyl-CoA-carboxylase] synthetase;
          AltName: Full=Biotin--protein ligase
 gi|1146239|gb|AAB38447.1| biotin [acetyl-CoA-carboxylase] ligase [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|2634662|emb|CAB14160.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. subtilis str. 168]
          Length = 325

 Score = 38.0 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T R D     L+   +   +      +I++A   S   ++K ++ L K G  VE VR
Sbjct: 1  MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55

Query: 59 GRRGGVRLCRPA-----DQITIL 76
           +  G RL +        +I   
Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76


>gi|332967764|gb|EGK06870.1| MarR family transcriptional regulator [Desmospora sp. 8437]
          Length = 140

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L Y A H+  P   S+++    +S   + ++   LVK G V   R  
Sbjct: 42 LKYLATHD--PRSPSELSAVLEVSASHVTQVTDSLVKKGWVRRYRSP 86


>gi|300790689|ref|YP_003770980.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299800203|gb|ADJ50578.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 323

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L++  +        +++A    +SE  + + L  L +AG+ + T +GR GG RL
Sbjct: 6  LVALLF-TLQRRRSATAAELAGELGVSERTMHRDLAALREAGVPLWTEQGRHGGFRL 61


>gi|227548493|ref|ZP_03978542.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079425|gb|EEI17388.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 143

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 7   TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           T Y            +R+L   A     P  ++++ E   +S+  +   L+ + +AG++E
Sbjct: 57  TRYAALFKVLAEPVRLRILSQLAAGGCGPVSVNELTELMGLSQPTISHHLKKMTEAGLLE 116


>gi|194018072|ref|ZP_03056677.1| GntR family transcriptional regulator [Bacillus pumilus ATCC
          7061]
 gi|194010264|gb|EDW19841.1| GntR family transcriptional regulator [Bacillus pumilus ATCC
          7061]
          Length = 492

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
               D    +  +A+   +S +   K    L   G + TV+G+ 
Sbjct: 29 LLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRLKDDGYLTTVQGKG 73


>gi|332672053|ref|YP_004455061.1| DeoR family transcriptional regulator [Cellulomonas fimi ATCC
          484]
 gi|332341091|gb|AEE47674.1| DeoR family transcriptional regulator [Cellulomonas fimi ATCC
          484]
          Length = 337

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           H D+P    ++AE    +   + + +  L   G  +++ +GR GG RL
Sbjct: 16 AHRDWPG--QELAERLGTTSRTVRRDVDRLRTMGYRIDSAKGRAGGYRL 62


>gi|321311713|ref|YP_004204000.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis BSn5]
 gi|320017987|gb|ADV92973.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis BSn5]
          Length = 325

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T R D     L+   +   +      +I++A   S   ++K ++ L K G  VE VR
Sbjct: 1  MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55

Query: 59 GRRGGVRLCRPA-----DQITIL 76
           +  G RL +        +I   
Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76


>gi|262279751|ref|ZP_06057536.1| GntR family transcriptional regulator [Acinetobacter
          calcoaceticus RUH2202]
 gi|262260102|gb|EEY78835.1| GntR family transcriptional regulator [Acinetobacter
          calcoaceticus RUH2202]
          Length = 239

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          + +A    +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 87


>gi|283795506|ref|ZP_06344659.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. M62/1]
 gi|291077171|gb|EFE14535.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. M62/1]
 gi|295091188|emb|CBK77295.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Clostridium
          cf. saccharolyticum K10]
          Length = 326

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +L Y     D      ++ E   +S   ++K+++ L   G  +E VR R  G RL    D
Sbjct: 5  ILRYL-KEADGYISGQELCERFQVSRTAVWKVVRQLEAEGYEIEAVRNR--GYRLKTAGD 61

Query: 72 QITILDVVKATEESFFVAECFASHKID 98
           ++  +++ +   S+   E     ++D
Sbjct: 62 ILSQAEILSSIRGSWAGREILYLDEVD 88


>gi|225569861|ref|ZP_03778886.1| hypothetical protein CLOHYLEM_05955 [Clostridium hylemonae DSM
          15053]
 gi|225161331|gb|EEG73950.1| hypothetical protein CLOHYLEM_05955 [Clostridium hylemonae DSM
          15053]
          Length = 326

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +       Q+ ++  +S   ++K+++ L K G  +E VR R  G RL    D
Sbjct: 10 RESGGYVSGQQLCDSFGVSRTAVWKVIEQLKKEGYEIEAVRSR--GYRLVESPD 61


>gi|254385957|ref|ZP_05001274.1| hypothetical protein SSAG_05616 [Streptomyces sp. Mg1]
 gi|194344819|gb|EDX25785.1| hypothetical protein SSAG_05616 [Streptomyces sp. Mg1]
          Length = 98

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R L    A+H +      +++    I    ++ +L+ L   G V   R   G  RL   
Sbjct: 38 RALRLVEAMHAEGEATAKRLSRVTGIPLPTVYHLLRTLSHEGYV---RREHGAFRLAED 93


>gi|157691299|ref|YP_001485761.1| GntR family transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680057|gb|ABV61201.1| GntR family transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 492

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
               D    +  +A+   +S +   K    L   G + TV+G+ 
Sbjct: 29 LLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRLKDDGYLTTVQGKG 73


>gi|29827897|ref|NP_822531.1| GntR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29604998|dbj|BAC69066.1| putative GntR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 256

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 10 GIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +R  +  A+        +     +QIA A  +SE+   + L  L   G++E  RGR GG
Sbjct: 28 AVRARIALAVDLGLLSPGERLPGTAQIARALDVSEITARRALVSLCGDGVLERRRGRNGG 87

Query: 64 VRLCRPA 70
            +    
Sbjct: 88 TLVAAHP 94


>gi|28212074|ref|NP_783018.1| CBS domain-containing cytosolic protein [Clostridium tetani E88]
 gi|28204517|gb|AAO36955.1| cytosolic protein containing cbs domains [Clostridium tetani E88]
          Length = 448

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP----ADQITILD 77
               +  IA    ISE   +K ++   K GIV T+  R G +R+ +P     + IT  +
Sbjct: 17 GTKISVRTIANLLEISEGTAYKGIKECSKMGIVTTIP-RIGTIRIRKPDYNGEENITYGE 75

Query: 78 VVKATEESFF 87
          +V   + +  
Sbjct: 76 IVNIVDGNIA 85


>gi|13475048|ref|NP_106611.1| transposase [Mesorhizobium loti MAFF303099]
 gi|14025798|dbj|BAB52397.1| transposase [Mesorhizobium loti MAFF303099]
          Length = 159

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLCRPADQITI 75
            H      IS +A A  +S    +K    L     AG+V   RG +GG ++   A+ +  
Sbjct: 55  RHQADRVPISDVASAFGVSRPTFYKAQSALADQGLAGLVPRQRGPKGGHKI--SAEVLAY 112

Query: 76  LDVVKATEESFFVAECFA 93
           +D ++ T     V +C  
Sbjct: 113 IDQIRTTRPDLTVPQCVD 130


>gi|85709032|ref|ZP_01040098.1| Transcriptional regulator, ArsR family protein [Erythrobacter sp.
          NAP1]
 gi|85690566|gb|EAQ30569.1| Transcriptional regulator, ArsR family protein [Erythrobacter sp.
          NAP1]
          Length = 112

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   +  L       D      +IA    I    L   L  L  AG+V + R
Sbjct: 13 LSQETR--LETLKLLVRAGDDGLPAGEIARQLDIGSTLLSAHLSKLSNAGLVTSRR 66


>gi|150018173|ref|YP_001310427.1| helix-turn-helix, type 11 domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149904638|gb|ABR35471.1| Helix-turn-helix, type 11 domain protein [Clostridium
          beijerinckii NCIMB 8052]
          Length = 304

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M +++        ++Y  +         +++E   +S   +++ +  L +AGI + + +G
Sbjct: 1  MQISRLFQ-----IIYILLKRKS-ITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQG 54

Query: 60 RRGGVRL 66
          + GG+ L
Sbjct: 55 KGGGISL 61


>gi|319645865|ref|ZP_08000095.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
 gi|317391615|gb|EFV72412.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
          Length = 221

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          R +++  +  +      ++AE   IS   + + L+ L   G+VE V G
Sbjct: 24 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPG 71


>gi|218296341|ref|ZP_03497084.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
 gi|218243135|gb|EED09666.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
          Length = 198

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRG-G--VRLCRP-----ADQI 73
           P    ++AEA  +S   + K LQ L   G+V + VR   G G   RL R          
Sbjct: 19 RPLTAKEVAEALGLSRAAVGKHLQDLEARGLVRSEVRRPSGRGRPYRLYRAQDGESPYAA 78

Query: 74 TILDVVKATEESF 86
             DV++  EE+ 
Sbjct: 79 LCGDVLRGLEEAL 91


>gi|15966321|ref|NP_386674.1| putative transcription regulator protein [Sinorhizobium meliloti
          1021]
 gi|307307791|ref|ZP_07587520.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          BL225C]
 gi|307317453|ref|ZP_07596893.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          AK83]
 gi|15075592|emb|CAC47147.1| Transcription regulator GntR family [Sinorhizobium meliloti 1021]
 gi|306897042|gb|EFN27788.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          AK83]
 gi|306901657|gb|EFN32259.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          BL225C]
          Length = 244

 Score = 38.0 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 11 IRVLMYC-AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          +R  +   A           ++ +   +S   + + LQ L    ++ET RGR G   L R
Sbjct: 19 LRAAIESGAYPPGSKLPTEGELCQQYDVSRSVVRQALQSLAHDNLIETERGR-GAFVLER 77

Query: 69 P 69
           
Sbjct: 78 K 78


>gi|255017472|ref|ZP_05289598.1| hypothetical protein LmonF_06313 [Listeria monocytogenes FSL
           F2-515]
          Length = 55

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
             +  +  NA  DVL Q ++  L+++
Sbjct: 16  RELWTRMRNAVRDVLDQTTLADLLKH 41


>gi|167584446|ref|ZP_02376834.1| transcriptional regulator, GntR family protein [Burkholderia
           ubonensis Bu]
          Length = 271

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +       +AE   +S   + + +  L + G++E+ RG  
Sbjct: 64  GEGLPPERDLAERFQVSRDTVRRAIDKLSQQGLIESRRGAG 104


>gi|124441833|gb|ABN11532.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|124441837|gb|ABN11535.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|124441853|gb|ABN11547.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441857|gb|ABN11550.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441861|gb|ABN11553.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441865|gb|ABN11556.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 319

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70
          L+   +   +      +I++A   S   ++K ++ L K G  VE VR +  G RL +   
Sbjct: 3  LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 60

Query: 71 ----DQITIL 76
               +I   
Sbjct: 61 KLSESEIRFG 70


>gi|121633826|ref|YP_976064.1| plasmid replication protein [Enterococcus faecium]
 gi|124111994|ref|YP_001019023.1| putative Rep protein [Enterococcus faecium]
 gi|307352131|ref|YP_003896005.1| plasmid replication protein [Enterococcus faecalis]
 gi|121490885|emb|CAL36521.1| plasmid replication protein [Enterococcus faecium]
 gi|124012096|emb|CAL90927.1| putative Rep protein [Enterococcus faecium]
 gi|283481173|emb|CAZ67085.1| putative replication protein [Enterococcus faecium]
 gi|307155369|gb|ADN34750.1| plasmid replication protein [Enterococcus faecalis]
          Length = 499

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
           +   ++ E   I +  L K+L+ L +   +      GR GG+ L 
Sbjct: 395 STKKELTERLKIPKRSLDKVLKQLREENKIHFRVRAGRNGGIMLA 439


>gi|69243951|ref|ZP_00602529.1| similar to plasmid replication protein [Enterococcus faecium DO]
 gi|294615540|ref|ZP_06695399.1| RepE protein [Enterococcus faecium E1636]
 gi|68196677|gb|EAN11102.1| similar to plasmid replication protein [Enterococcus faecium DO]
 gi|291591578|gb|EFF23228.1| RepE protein [Enterococcus faecium E1636]
          Length = 499

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
           +   ++ E   I +  L K+L+ L +   +      GR GG+ L 
Sbjct: 395 STKKELTERLKIPKRSLDKVLKQLREENKIHFRVRAGRNGGIMLA 439


>gi|332528108|ref|ZP_08404139.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
          JA2]
 gi|332112679|gb|EGJ12472.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
          JA2]
          Length = 243

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 13 VLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           L+   A H D P  + +I+E   +      +IL  L    +V+  R + G  RL     
Sbjct: 7  ALLDMLAAHPD-PVSLKEISERTGLHPSTAHRILNDLTIGRLVD--RPQAGSYRLGMRLL 63

Query: 72 QITILDVVKA 81
          +  + ++VKA
Sbjct: 64 E--LGNLVKA 71


>gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505]
 gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505]
          Length = 370

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           R ++ C   +D P++I+ IAE       ++      L+ AGI++T
Sbjct: 299 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 343


>gi|269960647|ref|ZP_06175019.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3]
 gi|269834724|gb|EEZ88811.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3]
          Length = 336

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +L Y A H++ P  I  IAE   +   +   + Q 
Sbjct: 208 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQR 242


>gi|300769980|ref|ZP_07079859.1| LacI family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
 gi|300762456|gb|EFK59273.1| LacI family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
          Length = 368

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A+  + P  I +IA    IS   + + L      G+V T+R
Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMR 73


>gi|153834146|ref|ZP_01986813.1| melibiose operon regulatory protein [Vibrio harveyi HY01]
 gi|148869516|gb|EDL68514.1| melibiose operon regulatory protein [Vibrio harveyi HY01]
          Length = 332

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +L Y A H++ P  I  IAE   +   +   + Q 
Sbjct: 204 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQR 238


>gi|85859535|ref|YP_461737.1| transcriptional regulator [Syntrophus aciditrophicus SB]
 gi|85722626|gb|ABC77569.1| predicted transcriptional regulator [Syntrophus aciditrophicus SB]
          Length = 290

 Score = 38.0 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 20/92 (21%)

Query: 2   HLTK-RTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVET 56
            +T+ +T++G   +R+L Y  +      R  +IA A  I+     ++   + ++G  +  
Sbjct: 18  KITQNKTEFGSLEMRLLAYVQMRKMDVVRTKEIAAALKITPKQERELFSRMSRSGVFIRL 77

Query: 57  VRG--------RRGG-------VRLCRPADQI 73
            RG          GG         L R   +I
Sbjct: 78  TRGVYLVPPRFPAGGRLAVSEYYILSRLMREI 109


>gi|301321612|gb|ADK69002.1| Transcriptional regulator [Gordonia sp. KTR9]
          Length = 247

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +A+   +S + L + +  L   G+VET RGR G
Sbjct: 45 DLAQLLGVSPMTLREAMAVLRDEGLVETRRGRNG 78


>gi|293376782|ref|ZP_06623004.1| transcriptional regulator, DeoR family [Turicibacter sanguinis
          PC909]
 gi|325845672|ref|ZP_08168955.1| HTH domain protein [Turicibacter sp. HGF1]
 gi|292644648|gb|EFF62736.1| transcriptional regulator, DeoR family [Turicibacter sanguinis
          PC909]
 gi|325488273|gb|EGC90699.1| HTH domain protein [Turicibacter sp. HGF1]
          Length = 219

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L       + ++ Y  +       I ++AE   +S   + + +  L   GI + + RG
Sbjct: 1  MRL-------LELVFYL-LKCHSKVTIKELAETFDVSTKTIQRDIDKLCVLGIPIISTRG 52

Query: 60 RRGGV 64
          + GG+
Sbjct: 53 KNGGI 57


>gi|255023123|ref|ZP_05295109.1| hypothetical protein LmonocyFSL_06060 [Listeria monocytogenes FSL
          J1-208]
          Length = 86

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 9  YGIRVLMYCAIH-NDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVETVR 58
          Y +  L+   +  ++    + +      +A+   +S+ +  K+L  L + GI+E+ +
Sbjct: 6  YSLNTLIELGLRISEKVVELPEFLTYQILADHANVSKSYTSKVLGHLRQEGILESRK 62


>gi|114707104|ref|ZP_01440002.1| transcriptional regulator protein (repressor of nodulation
          genes), ArsR family [Fulvimarina pelagi HTCC2506]
 gi|114537300|gb|EAU40426.1| transcriptional regulator protein (repressor of nodulation
          genes), ArsR family [Fulvimarina pelagi HTCC2506]
          Length = 106

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A   +   ++  +AE   +S+  L + L  L   G VET R
Sbjct: 22 LRILCLLA---EGEMQVGALAERVGLSQSALSQHLAKLRAGGAVETRR 66


>gi|220920523|ref|YP_002495824.1| GntR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945129|gb|ACL55521.1| transcriptional regulator, GntR family [Methylobacterium nodulans
           ORS 2060]
          Length = 265

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            A     P    +IA    +S   + + +  L   G+VE     + G  + R   +  + 
Sbjct: 43  LARLPGQPINEKEIAARYGVSRTPVHEAMLKLADEGLVEIF--PQAGTYVARIPYR-DLP 99

Query: 77  DVV---KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA-----LNAFFD 120
           +V+   +A EES       A H     L     +   L +A       AF  
Sbjct: 100 EVIVIRRALEESSA--RLAAEHAKPADLAALDRIMVALDEAAADQDREAFRQ 149


>gi|755608|gb|AAA92879.1| biotin [acetyl-CoA carboxylase] ligase [Bacillus subtilis subsp.
          subtilis str. 168]
          Length = 305

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T R D     L+   +   +      +I++A   S   ++K ++ L K G  VE VR
Sbjct: 1  MRSTLRKD-----LIELFSQAGNEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55

Query: 59 GRRGGVRLCRPA-----DQITIL 76
           +  G RL +        +I   
Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76


>gi|304312329|ref|YP_003811927.1| tRNA-processing ribonuclease BN [gamma proteobacterium HdN1]
 gi|301798062|emb|CBL46284.1| tRNA-processing ribonuclease BN [gamma proteobacterium HdN1]
          Length = 422

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +R L+  A      +     +QI E   +      +I + L++A ++    G     +L
Sbjct: 317 ALRTLVLAARPFDRGETLLTQAQIEEQLGVPIPLSRRICEKLIRAKLLICNEGSD---QL 373

Query: 67  --CRPADQITILDVVKAT 82
              R  DQI++ D++ A 
Sbjct: 374 LPGRSIDQISLSDILTAI 391


>gi|227538430|ref|ZP_03968479.1| LacI family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227241712|gb|EEI91727.1| LacI family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 368

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A+  + P  I +IA    IS   + + L      G+V T+R
Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMR 73


>gi|15614248|ref|NP_242551.1| transcriptional repressor of the biotin operon [Bacillus
          halodurans C-125]
 gi|10174302|dbj|BAB05404.1| transcriptional repressor of the biotin operon [Bacillus
          halodurans C-125]
          Length = 323

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L       D      +I++A   S   ++K ++ L K+G  VE V+ +  G R+ +  DQ
Sbjct: 6  LKMLLTAGDDFVSGEKISQAIGCSRTAVWKHIEELRKSGYEVEAVQRK--GYRIVKRPDQ 63

Query: 73 ITILDVVKATE 83
          I   D+    E
Sbjct: 64 IKPHDIQVVLE 74


>gi|260061566|ref|YP_003194646.1| ArsR family transcription regulator [Robiginitalea biformata
          HTCC2501]
 gi|88785698|gb|EAR16867.1| transcription regulator, ArsR family protein (imported)
          [Robiginitalea biformata HTCC2501]
          Length = 84

 Score = 38.0 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +      +IA+   IS+  +   L  L +AG+V + R  +G   L
Sbjct: 21 KERDLSAGEIADQFNISKPSISHHLDLLKRAGLVSSRR--QGQFML 64


>gi|290960127|ref|YP_003491309.1| IclR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260649653|emb|CBG72768.1| putative IclR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 252

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR-GGVRLC 67
           +RVL   A H       ++IA    +    L  +L+ L + G VE T  G    G  L 
Sbjct: 17 ALRVLETVARHAGG-VTDAEIARRTGVDSERLTALLRMLRREGYVEQTTEGAYVTGAALA 75

Query: 68 R 68
          R
Sbjct: 76 R 76


>gi|254420441|ref|ZP_05034165.1| HTH domain family [Brevundimonas sp. BAL3]
 gi|196186618|gb|EDX81594.1| HTH domain family [Brevundimonas sp. BAL3]
          Length = 110

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70
          ++L Y A H D      +IA    IS+  + + L  L  AG+V +  +G+     L    
Sbjct: 15 KILAYLA-HAD--LTAGEIAAKFEISKPAVSQHLSVLEVAGLVTSEKKGQYVHYSLA--P 69

Query: 71 DQIT 74
          DQ+T
Sbjct: 70 DQLT 73


>gi|83642928|ref|YP_431363.1| ArsR family transcriptional regulator [Hahella chejuensis KCTC
          2396]
 gi|83630971|gb|ABC26938.1| transcription regulator (ArsR family) [Hahella chejuensis KCTC
          2396]
          Length = 124

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R+L Y    +  P    +IA+   IS+  + K L  L+ +G+V+
Sbjct: 17 RILAYL---SKSPLTAGEIADRFDISKPAISKHLSILLASGLVQ 57


>gi|152966816|ref|YP_001362600.1| hypothetical protein Krad_2870 [Kineococcus radiotolerans
          SRS30216]
 gi|151361333|gb|ABS04336.1| Helix-turn-helix type 11 domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 326

 Score = 38.0 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +AE   ++   + + +  L   G  V  ++G  GG RL
Sbjct: 30 ATLAERLDVTPRTVRRDVDRLRGLGYPVRALKGPGGGYRL 69


>gi|320532097|ref|ZP_08032978.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135702|gb|EFW27769.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 370

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           R ++ C   +D P++I+ IAE       ++      L+ AGI++T
Sbjct: 299 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 343


>gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075231|gb|ADJ64630.1| GntR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 255

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 18/120 (15%)

Query: 10  GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------- 59
            +  ++        D     S+I +   +S   + + +  L  AG+VET  G        
Sbjct: 27  ALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHGIGTFVLEA 86

Query: 60  RRGGVRLCRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           ++GG  +      I T+ D++   E    +            L  +      L++   A 
Sbjct: 87  KKGG-NINIDPATITTMRDLLALLELRISL------ETETAGLAAARRTEEQLQEIREAL 139


>gi|145294182|ref|YP_001137003.1| hypothetical protein cgR_0139 [Corynebacterium glutamicum R]
 gi|57157996|dbj|BAD83970.1| putative transcriptional regulator [Corynebacterium glutamicum]
 gi|140844102|dbj|BAF53101.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 107

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R+ +  A+ N      S++A+   +S+  +   L  L   G+V +   GR     L  P 
Sbjct: 21  RMAILLALRNGAARP-SELAQQLGVSKQVMSNQLSCLRGCGLVTSTPEGRHVWYTLADP- 78

Query: 71  DQITILDVVKATEESFFVA-----ECFASHKIDC 99
               + D   A  +          +C +     C
Sbjct: 79  ---RLRD---ALGDLLIPVLTIDPDCCSPEGCTC 106


>gi|296394859|ref|YP_003659743.1| IclR family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296182006|gb|ADG98912.1| transcriptional regulator, IclR family [Segniliparus rotundus DSM
          44985]
          Length = 263

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          R L+    +    P  I+Q+AE   + +    +++  L   G VE  RG  G  +L 
Sbjct: 21 RALLVLEILAQSGPTGITQLAEEIGVHKSTASRLVAVLEGRGFVE--RGANGKYQLG 75


>gi|300780580|ref|ZP_07090435.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533566|gb|EFK54626.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030]
          Length = 177

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           L+  A       R++++A+A  +S   L +++  L K G+V
Sbjct: 51 ALLNVAKAPKKSLRMTELADATMMSLSHLSRVVTRLEKKGLV 92


>gi|148642629|ref|YP_001273142.1| phosphate transport system regulator-like protein, PhoU
          [Methanobrevibacter smithii ATCC 35061]
 gi|148551646|gb|ABQ86774.1| phosphate transport system regulator-like protein, PhoU
          [Methanobrevibacter smithii ATCC 35061]
          Length = 293

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P+   +IAE   I+  ++ ++LQPLVK G V+
Sbjct: 18 ENPSTQDEIAEKLGITRRYVTQLLQPLVKEGTVK 51


>gi|25027501|ref|NP_737555.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|259507091|ref|ZP_05749991.1| ArsR family transcriptional regulator [Corynebacterium efficiens
          YS-314]
 gi|23492783|dbj|BAC17755.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|259165369|gb|EEW49923.1| ArsR family transcriptional regulator [Corynebacterium efficiens
          YS-314]
          Length = 133

 Score = 38.0 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67
          Y IR+L   +  +  P     + +   +    L + L  L K G+V + R        L 
Sbjct: 24 YRIRILEILSTESQVPVSA--MIQETGLESSHLSQHLAVLRKYGLVTSERNANAVSYSLT 81

Query: 68 RPADQITILDVVK 80
           P     + D+++
Sbjct: 82 HPQ----VADLLR 90


>gi|251795741|ref|YP_003010472.1| hypothetical protein Pjdr2_1723 [Paenibacillus sp. JDR-2]
 gi|247543367|gb|ACT00386.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2]
          Length = 319

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +++     N+      ++A+   +S+  + + +  L  +GI V   RG+ GG RL
Sbjct: 7  LSIMILL--QNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRL 61


>gi|154151641|ref|YP_001405259.1| signal transduction protein [Candidatus Methanoregula boonei 6A8]
 gi|154000193|gb|ABS56616.1| putative signal transduction protein with CBS domains
          [Methanoregula boonei 6A8]
          Length = 292

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  L+       +  +  +IA+    +   +   +Q L   G+V+ V G +GG 
Sbjct: 11 LITLITLYHQKSHSIKGEEIADMILRNPGTVRNQMQSLKAIGLVDGVPGPKGGY 64


>gi|328545556|ref|YP_004305665.1| transcriptional regulator [polymorphum gilvum SL003B-26A1]
 gi|326415296|gb|ADZ72359.1| Predicted transcriptional regulator [Polymorphum gilvum
          SL003B-26A1]
          Length = 340

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             +++AE   +S   +++ +  L+  G+ +E  RG  GG RL +
Sbjct: 20 VPATRLAERFEVSLRTIYRDVDRLLALGVPIEAERGAEGGYRLAK 64


>gi|307327034|ref|ZP_07606224.1| transcriptional regulator, ArsR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306887332|gb|EFN18328.1| transcriptional regulator, ArsR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 360

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P+   +++E+  I+   + + +  L KAG++ T R  RG   L
Sbjct: 298 GPHTTGELSESYGITPPEVSRHIAVLKKAGLLTTRR--RGRYVL 339


>gi|288917663|ref|ZP_06412026.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
 gi|288350878|gb|EFC85092.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
          Length = 253

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A    +S   + + +  L + G  +   +G  GG RL
Sbjct: 26 LAARLEVSPRTVRRDVDRLRELGYPIRATKGPDGGYRL 63


>gi|258648610|ref|ZP_05736079.1| YihY family protein [Prevotella tannerae ATCC 51259]
 gi|260851396|gb|EEX71265.1| YihY family protein [Prevotella tannerae ATCC 51259]
          Length = 413

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 11  IRVLMYCA-IHNDYPNRISQIAEACCISELFLFK---ILQPLVKAGIVETVRGRRGGVRL 66
           +  ++Y A    + P  + +IAE   ++   L +   ++Q L     ++  R        
Sbjct: 304 LLCVVYKAFERGEAPISVDRIAEDLKLNPSLLKEALELMQSLPFLLYLDQER-----YAP 358

Query: 67  CRPADQITILDVVKATEES 85
            R   Q+TI +V+KA +  
Sbjct: 359 ARDPRQLTIGEVIKALDRD 377


>gi|258650628|ref|YP_003199784.1| Helix-turn-helix type 11 domain-containing protein [Nakamurella
          multipartita DSM 44233]
 gi|258553853|gb|ACV76795.1| Helix-turn-helix type 11 domain protein [Nakamurella multipartita
          DSM 44233]
          Length = 335

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          R+L    +  +       ++AE   +S+  + K +  L   G  V+ VRG  G   L 
Sbjct: 7  RLLSLLGLMQSRRRWAGPELAERLGVSDRTVRKDIDRLRSLGYPVDAVRGAGGYYELG 64


>gi|182439119|ref|YP_001826838.1| DeoR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|326779771|ref|ZP_08239036.1| DeoR family transcriptional regulator [Streptomyces cf. griseus
          XylebKG-1]
 gi|178467635|dbj|BAG22155.1| putative DeoR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
 gi|326660104|gb|EGE44950.1| DeoR family transcriptional regulator [Streptomyces cf. griseus
          XylebKG-1]
          Length = 327

 Score = 38.0 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +        +++A    +SE  + +  Q L  AG+ V   RGR GG RL
Sbjct: 9  MVLLLQARPAMTAAELAAELEVSERTVTRDAQALSDAGVPVYAERGRAGGYRL 61


>gi|326780203|ref|ZP_08239468.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
 gi|326660536|gb|EGE45382.1| regulatory protein DeoR [Streptomyces cf. griseus XylebKG-1]
          Length = 321

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L   G  V   RG  GG +L   A+
Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRDLGYPVNASRGTGGGYQLGAGAE 68


>gi|256396309|ref|YP_003117873.1| GntR family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362535|gb|ACU76032.1| transcriptional regulator, GntR family [Catenulispora acidiphila
          DSM 44928]
          Length = 253

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+  A      +    +AE   +S   +   LQ L ++G +   +GR 
Sbjct: 27 LIDTAAPGTSLDSERDLAETLGVSRPTVRAALQDLARSGYLVRHQGRG 74


>gi|222445873|ref|ZP_03608388.1| hypothetical protein METSMIALI_01519 [Methanobrevibacter smithii
          DSM 2375]
 gi|261349582|ref|ZP_05974999.1| phosphate transport system regulator [Methanobrevibacter smithii
          DSM 2374]
 gi|222435438|gb|EEE42603.1| hypothetical protein METSMIALI_01519 [Methanobrevibacter smithii
          DSM 2375]
 gi|288861540|gb|EFC93838.1| phosphate transport system regulator [Methanobrevibacter smithii
          DSM 2374]
          Length = 293

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P+   +IAE   I+  ++ ++LQPLVK G V+
Sbjct: 18 ENPSTQDEIAEKLGITRRYVTQLLQPLVKEGTVK 51


>gi|229815644|ref|ZP_04445971.1| hypothetical protein COLINT_02695 [Collinsella intestinalis DSM
          13280]
 gi|229808874|gb|EEP44649.1| hypothetical protein COLINT_02695 [Collinsella intestinalis DSM
          13280]
          Length = 238

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           D      ++AE   +S   L   +  LV   ++E+ +G  G   L  P   I I  
Sbjct: 12 GDRLMPERELAERLGVSRTALRAAITQLVSTHVLESRQG-SGTYVL--PPKPINIFQ 65


>gi|182439539|ref|YP_001827258.1| DeoR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178468055|dbj|BAG22575.1| putative DeoR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 321

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L   G  V   RG  GG +L   A+
Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRDLGYPVNASRGTGGGYQLGAGAE 68


>gi|158424859|ref|YP_001526151.1| hypothetical protein AZC_3235 [Azorhizobium caulinodans ORS 571]
 gi|158331748|dbj|BAF89233.1| unknown protein [Azorhizobium caulinodans ORS 571]
          Length = 317

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           D G+  L+   + +  P  ISQ+A    +S   +  +LQ      +V    GR GG R
Sbjct: 208 DVGLVALVSF-VASGGPMSISQLARQFSVSRAHIANVLQLAEAQNLVCGEPGR-GGYR 263


>gi|322368081|ref|ZP_08042650.1| hypothetical protein ZOD2009_01325 [Haladaptatus paucihalophilus
          DX253]
 gi|320552097|gb|EFW93742.1| hypothetical protein ZOD2009_01325 [Haladaptatus paucihalophilus
          DX253]
          Length = 140

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y + VL +    N+ P R S I +   +S   L K L  L +AG++ 
Sbjct: 46 YALPVL-HLFSMNEGPLRFSDIEDRLDVSPTTLSKRLSELTEAGLLT 91


>gi|317419272|emb|CBN81309.1| Transposable element Tcb1 transposase [Dicentrarchus labrax]
          Length = 341

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
            I++   I    +  +++   K G V+ + GR G     R  D+ ++  +V+  +
Sbjct: 26 KAISKDLGIPVSTVRNVIKKFAKHGTVKNLPGRGG----KRKIDERSLRRLVRMVD 77


>gi|297561074|ref|YP_003680048.1| iron (metal) dependent repressor, DtxR family [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845522|gb|ADH67542.1| iron (metal) dependent repressor, DtxR family [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 233

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++V+       + P  IS +AE   +S   +  +L+ L + G+VE  R   G V L 
Sbjct: 14 DY-VKVIYDLQERGNGPVTISGMAERLSVSNSSVSGMLRKLSELGLVEHRR--YGAVNLT 70

Query: 68 RP 69
           P
Sbjct: 71 EP 72


>gi|226308918|ref|YP_002768878.1| DeoR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226188035|dbj|BAH36139.1| putative DeoR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 324

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   IS   + + +  L + G  +    G  GG RL
Sbjct: 25 LAERLDISHRTVRRDIDRLREMGYSIAATMGPDGGYRL 62


>gi|254490799|ref|ZP_05103982.1| LexA repressor [Methylophaga thiooxidans DMS010]
 gi|224463971|gb|EEF80237.1| LexA repressor [Methylophaga thiooxydans DMS010]
          Length = 202

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 16 YCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          Y   H   P  +S+IAE   I S+    + +Q LV AG++E   GR  G+RL    + I
Sbjct: 16 YVDEHGRSPL-VSEIAEGLGIRSQGTTHRYIQALVDAGLLERHVGRTRGLRLTEQPEDI 73


>gi|221067912|ref|ZP_03544017.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni
           KF-1]
 gi|220712935|gb|EED68303.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni
           KF-1]
          Length = 270

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           H +      QIA    +S     +ILQ L +AG ++  RG+
Sbjct: 208 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 248


>gi|83950681|ref|ZP_00959414.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
 gi|83838580|gb|EAP77876.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
          Length = 237

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
             D     ++++    ++   + + +  L +AG+  + RG   GV +        +   
Sbjct: 24 RPGDKLPTEAELSARFGVNRHTVRRAIAALAEAGLTHSQRGS--GVFVTAKPTDYPLGRR 81

Query: 79 VK 80
          V+
Sbjct: 82 VR 83


>gi|296118634|ref|ZP_06837212.1| transcriptional regulator, MarR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968533|gb|EFG81780.1| transcriptional regulator, MarR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 167

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 2   HLTK---RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            LT+    + +G   L   +  ++   R+S++AE    S   L +++  L K G V 
Sbjct: 44  QLTQNAGLSHFGYTALARLSEADNRSLRMSELAETANGSLSRLSQVIAKLEKKGWVT 100


>gi|218281381|ref|ZP_03487859.1| hypothetical protein EUBIFOR_00424 [Eubacterium biforme DSM 3989]
 gi|218217473|gb|EEC91011.1| hypothetical protein EUBIFOR_00424 [Eubacterium biforme DSM 3989]
          Length = 243

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      +++E   I+ + +   L+ L + G+++T RG  
Sbjct: 26 GDRLVSEREMSEQYGINRMTVRNALKKLQEEGVIKTKRGSG 66


>gi|120406178|ref|YP_956007.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
 gi|119958996|gb|ABM16001.1| regulatory protein, IclR [Mycobacterium vanbaalenii PYR-1]
          Length = 316

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
          +RVL + A H      +S++A    +++     I+  L  AG +  VR       RL   
Sbjct: 18 VRVLDFLARHPQERFGVSELARRVDLTKPTCLGIVTSLRDAGYL--VRDPADKTYRLG-- 73

Query: 70 ADQITIL 76
             IT+ 
Sbjct: 74 PSLITLG 80


>gi|150389135|ref|YP_001319184.1| regulatory protein GntR, HTH [Alkaliphilus metalliredigens QYMF]
 gi|149948997|gb|ABR47525.1| regulatory protein GntR, HTH [Alkaliphilus metalliredigens QYMF]
          Length = 124

 Score = 38.0 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++A++  I+   + K  + L K G + +VRG+ 
Sbjct: 37 SVRELAQSLTINPNTIQKAYRDLEKEGFIYSVRGKG 72


>gi|302551328|ref|ZP_07303670.1| IclR-family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302468946|gb|EFL32039.1| IclR-family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 260

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   D P R+ ++A+   +    ++ +LQ LV  G V T
Sbjct: 17 VELLELLAARGDRPARLQELADELGVPRSSMYALLQTLVSRGWVRT 62


>gi|229490407|ref|ZP_04384248.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|229322697|gb|EEN88477.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 128

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+++  +S+  +   L+ L +AG+++  R
Sbjct: 42 LRLLSLVASHEGGEACVCDISDSFDLSQPTISHHLKVLRQAGLLDCER 89


>gi|154251387|ref|YP_001412211.1| putative ribonuclease BN [Parvibaculum lavamentivorans DS-1]
 gi|154155337|gb|ABS62554.1| putative ribonuclease BN [Parvibaculum lavamentivorans DS-1]
          Length = 459

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 8   DYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
              ++ L+           P     +A    +    + +I   L +AG++    G     
Sbjct: 317 RMAVQALLLVHDAFERGQTPWTEEALARRLHVPMEAMAEISGALCEAGLLTFAAGTPSKF 376

Query: 65  RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
              RPAD+  + DV+ A  +       F+    D  L     + ++  K       ++  
Sbjct: 377 VPTRPADKTCVADVLAAVRKKR-----FSRSVTDDTLAHEPRVEALFEKMDEQQARLVDP 431

Query: 125 YSIECLVRNRSSIKKIFNAG 144
            +I  L+    +  ++ +AG
Sbjct: 432 VTIASLMAADEAAPEV-DAG 450


>gi|293605141|ref|ZP_06687532.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292816465|gb|EFF75555.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 68

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +R L        +D P  ++ + EA  + +  + +IL  LV+AG++
Sbjct: 8  ALRALTLLEQVARSDAPVSLAALTEATGLPKPSVLRILTRLVEAGML 54


>gi|291531033|emb|CBK96618.1| Transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 154

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          RVLMY A   +     + + +  CIS+  +  +++ L K+G +
Sbjct: 39 RVLMYIANSPEKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81


>gi|238618631|ref|YP_002913456.1| transcriptional regulator, MarR family [Sulfolobus islandicus
           M.16.4]
 gi|238379700|gb|ACR40788.1| transcriptional regulator, MarR family [Sulfolobus islandicus
           M.16.4]
          Length = 688

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQI--- 73
           + +D   + S++A+   +S+ +   +L+ L + G+VE  +  G+     L     +I   
Sbjct: 522 LPDDKGLKSSEVADKLRVSKQYAINVLKNLERKGLVEADKEDGKTFAWYLTPLGRKIKDL 581

Query: 74  --TILDVVKA 81
              + DV++ 
Sbjct: 582 VNNVGDVIEV 591


>gi|237739853|ref|ZP_04570334.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423461|gb|EEO38508.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 478

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K+++ L + G + +V+G+ 
Sbjct: 32 ENDKFFSVRQISIKYGLNPNTVLKVVKALEEEGYLYSVKGKG 73


>gi|47097012|ref|ZP_00234585.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
 gi|255030867|ref|ZP_05302818.1| hypothetical protein LmonL_20286 [Listeria monocytogenes LO28]
 gi|47014594|gb|EAL05554.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 51

 Score = 37.6 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
             +  +  NA  DVL Q ++  L+++
Sbjct: 12  RELWTRMRNAVRDVLDQTTLADLLKH 37


>gi|325067697|ref|ZP_08126370.1| hypothetical protein AoriK_07744 [Actinomyces oris K20]
          Length = 317

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           R ++ C   +D P++I+ IAE       ++      L+ AGI++T
Sbjct: 246 RTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNRLLAAGIIKT 290


>gi|298247850|ref|ZP_06971655.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297550509|gb|EFH84375.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 324

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL    +    P     ++A    +    + + +  L  AGI VE   GR GG RL
Sbjct: 7  RVLTVLELLQSKPFITGPELATRLEVDVRTVRRYITTLQDAGIPVEANIGRHGGYRL 63


>gi|239584277|gb|ACR82891.1| DeoR family transcriptional regulator [Streptomyces sp. KCTC
          9047]
          Length = 353

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   +++  + + +  L + G  V+   G  GG RL 
Sbjct: 23 SGAELAERLGVTDRTVRRDVDRLRELGYPVDASPGTGGGYRLA 65


>gi|229818654|ref|YP_002880180.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
 gi|229564567|gb|ACQ78418.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
          Length = 325

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
           D   R+L   A+    P    S++A+   +S   +   ++ L +    VE VRGR G  
Sbjct: 2  ADTAARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADIERLRRLDYPVEGVRGRAGHY 61

Query: 65 RLC 67
          RL 
Sbjct: 62 RLG 64


>gi|169825966|ref|YP_001696124.1| YobV [Lysinibacillus sphaericus C3-41]
 gi|168990454|gb|ACA37994.1| YobV [Lysinibacillus sphaericus C3-41]
          Length = 308

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++   I+        ++AE   +S   +++ ++ L  AGI V + +G
Sbjct: 1  MKLER-----LLTMIMILINR-KKVTAQELAELFNVSVRTIYRDIETLSCAGIPVISQQG 54

Query: 60 RRGGVRL 66
            GG+ L
Sbjct: 55 VHGGISL 61


>gi|163851335|ref|YP_001639378.1| regulatory protein ArsR [Methylobacterium extorquens PA1]
 gi|163662940|gb|ABY30307.1| regulatory protein ArsR [Methylobacterium extorquens PA1]
          Length = 120

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           +R++               +A+A  +S   +   L+ L  AG+V + R GR        P
Sbjct: 20  LRLVRALVTAGPGGLASGVLADAVGVSAATVSHHLKELSHAGLVTSRREGRSIIYSAAYP 79

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDC 99
           A    + D+V+     F + +C   H   C
Sbjct: 80  A----LSDLVQ-----FLMRDCCQGHPEVC 100


>gi|307323322|ref|ZP_07602532.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306890811|gb|EFN21787.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 253

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++   D G+          +    +   A A  + E+ + +    L + G+VE   GR 
Sbjct: 33  RISLAVDLGLLA------PGERLPNVQATAAALGVGEITVRRAFGTLEREGVVERRPGRT 86

Query: 62  GGVRLCRPADQITILDV 78
           GG  +     + T+  V
Sbjct: 87  GGTFIAERPRRRTVAQV 103


>gi|239940668|ref|ZP_04692605.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239987148|ref|ZP_04707812.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
 gi|291444106|ref|ZP_06583496.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291347053|gb|EFE73957.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 327

 Score = 37.6 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +        +++A    +SE  + +  Q L  AG+ V   RGR GG RL
Sbjct: 9  MVLLLQARPAMTAAELAAELEVSERTVTRDAQALSDAGVPVYAERGRAGGYRL 61


>gi|291443652|ref|ZP_06583042.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291346599|gb|EFE73503.1| DeoR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 342

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V   RG  GG +L   A+
Sbjct: 43 SGADLADRLGVTPRTVRRDVDKLRELGYPVNAARGTGGGYQLGAGAE 89


>gi|264677779|ref|YP_003277685.1| Crp/Fnr family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262208291|gb|ACY32389.1| transcriptional regulator, Crp/Fnr family [Comamonas testosteroni
           CNB-2]
          Length = 253

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           H +      QIA    +S     +ILQ L +AG ++  RG+
Sbjct: 191 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 231


>gi|302535064|ref|ZP_07287406.1| MarR family transcriptional regulator [Streptomyces sp. C]
 gi|302443959|gb|EFL15775.1| MarR family transcriptional regulator [Streptomyces sp. C]
          Length = 155

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----L 66
           +  + + A+     +  S++AE   +++    +I+  L K G V       GG R    L
Sbjct: 42  LHGMAFQALKGPG-STASELAERLGVTKQAAGQIVDDLEKRGYVRREPHPGGGRRKLVVL 100

Query: 67  CRPADQ--ITILDVVKATEESFF 87
              A+Q   T   V+   E    
Sbjct: 101 TPAAEQHLATAGRVLHGLEAELA 123


>gi|239940221|ref|ZP_04692158.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239986710|ref|ZP_04707374.1| DeoR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
          Length = 321

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V   RG  GG +L   A+
Sbjct: 22 SGADLADRLGVTPRTVRRDVDKLRELGYPVNAARGTGGGYQLGAGAE 68


>gi|171059567|ref|YP_001791916.1| IclR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777012|gb|ACB35151.1| transcriptional regulator, IclR family [Leptothrix cholodnii
          SP-6]
          Length = 256

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
            +L   A H D P  + QI+E   +      +IL  LV    V+  R   G  RL    
Sbjct: 18 FHLLDVLATHQD-PVSLKQISEHTGLHPSTAHRILNDLVAGRFVD--RPEAGSYRLGMRL 74

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 75 LE--LGNLVKA 83


>gi|153004345|ref|YP_001378670.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027918|gb|ABS25686.1| biotin--acetyl-CoA-carboxylase ligase [Anaeromyxobacter sp.
          Fw109-5]
          Length = 329

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL + A   D       I+    ++   ++K +  L  AG  ++ +  R  G RL    D
Sbjct: 11 VLAFLAEAGDEFVSGEAISGKLGLTRAAVWKHVNALRAAGYRIDALPAR--GYRLAEVPD 68

Query: 72 QITILDV 78
          ++T L++
Sbjct: 69 RLTALEL 75


>gi|288930886|ref|YP_003434946.1| hypothetical protein Ferp_0497 [Ferroglobus placidus DSM 10642]
 gi|288893134|gb|ADC64671.1| hypothetical protein Ferp_0497 [Ferroglobus placidus DSM 10642]
          Length = 478

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 13/70 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILD 77
                 + +IA  C +S     K L  LV+AG +    + RG      L +         
Sbjct: 60  GGKGVSLGEIARKCGLSRKNTLKHLNALVEAGYIVKEGSRRGAV--YTLTKEGR------ 111

Query: 78  VVKATEESFF 87
             +A EE   
Sbjct: 112 --RAVEEVLE 119


>gi|163748232|ref|ZP_02155528.1| putative transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
 gi|161378494|gb|EDQ02967.1| putative transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
          Length = 238

 Score = 37.6 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI----- 73
           +  +     +QIA A  +S   + + L+ L + G+VE  RG  G     RP++++     
Sbjct: 32  VQGEKLPSENQIATAFGVSRPVVREALRKLQEDGLVEARRGV-GTFVRRRPSEKLIEYAT 90

Query: 74  --TILDVVKATEESFFV 88
             ++  +++A E    V
Sbjct: 91  AGSVAGLMRAMEARITV 107


>gi|306830105|ref|ZP_07463289.1| HTH domain protein [Streptococcus mitis ATCC 6249]
 gi|304427631|gb|EFM30727.1| HTH domain protein [Streptococcus mitis ATCC 6249]
          Length = 320

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  ++ N       +IAE   IS   +++ +  L  AGI + + RG +G   
Sbjct: 21 ILLSLLNKKRITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGDFY 72


>gi|295098800|emb|CBK87889.1| Transcriptional regulators [Eubacterium cylindroides T2-87]
          Length = 250

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++E   +S++ + K +  L K G+V+ V+G+ 
Sbjct: 37 ELSEQYNVSKITIRKAMSNLAKDGLVQKVQGKG 69


>gi|111220159|ref|YP_710953.1| DeoR family transcriptional regulator [Frankia alni ACN14a]
 gi|111147691|emb|CAJ59347.1| Putative DeoR family transcriptional regulator [Frankia alni
          ACN14a]
          Length = 391

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     + VLM             Q+A+   +S   + + L  L +AG+ V   RG
Sbjct: 1  MRASRL----LSVLMLL--QTRGKLTARQLADELEVSVRTVHRDLDSLAQAGVPVLADRG 54

Query: 60 RRGGVRL 66
            GG RL
Sbjct: 55 VTGGYRL 61


>gi|83649342|ref|YP_437777.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83637385|gb|ABC33352.1| predicted transcriptional regulator [Hahella chejuensis KCTC
          2396]
          Length = 323

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     + +LM              +A+ C +S   +++ ++ L   GI V + RG
Sbjct: 1  MRASRL----LTILMTL--QARGQTTAPMLAKECGVSLRTVYRDIETLSALGIPVYSERG 54

Query: 60 RRGGVRL 66
            GG RL
Sbjct: 55 AEGGYRL 61


>gi|57640682|ref|YP_183160.1| bifunctional biotin-protein ligase/biotin operon repressor
          [Thermococcus kodakarensis KOD1]
 gi|57159006|dbj|BAD84936.1| bifunctional biotin-protein ligase/biotin operon repressor
          [Thermococcus kodakarensis KOD1]
          Length = 239

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
           A   D P    ++AE   IS + ++K ++ L + G  +E       G  L    D
Sbjct: 14 LAAIEDGPVSGEKLAEGLGISRVAVWKHIRELKRLGYKIEAS---HAGYFLRERPD 66


>gi|239635944|ref|ZP_04676961.1| HTH domain protein [Staphylococcus warneri L37603]
 gi|239598409|gb|EEQ80889.1| HTH domain protein [Staphylococcus warneri L37603]
          Length = 232

 Score = 37.6 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          I        +++A+   +S+  + + +  L   G+ +    G +GG ++     +I++
Sbjct: 14 IQQSNKITATELAKRFNVSKRTILRDIDDLENQGVQIHASHGSQGGYKIQDAQSKISL 71


>gi|315160677|gb|EFU04694.1| primase 1 [Enterococcus faecalis TX0645]
          Length = 464

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|299531599|ref|ZP_07045004.1| transcriptional regulator, Crp/Fnr family protein [Comamonas
           testosteroni S44]
 gi|298720315|gb|EFI61267.1| transcriptional regulator, Crp/Fnr family protein [Comamonas
           testosteroni S44]
          Length = 253

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           H +      QIA    +S     +ILQ L +AG ++  RG+
Sbjct: 191 HRELAVSQEQIARMLGLSRQTTNQILQELQQAGWLQLRRGK 231


>gi|238060495|ref|ZP_04605204.1| DeoR-family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237882306|gb|EEP71134.1| DeoR-family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 321

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S+IAE   ++   + + ++ L   G  V+   G  GG RL      P 
Sbjct: 24 SEIAERLQVTPRTVRRDIERLRDLGYPVQAAMGVHGGYRLVAGKAMPP 71


>gi|187729635|ref|YP_001798636.1| repE protein [Lactococcus garvieae]
 gi|313247834|ref|YP_004032996.1| replication protein [Enterococcus faecalis]
 gi|171854419|dbj|BAG16426.1| putative repE protein [Lactococcus garvieae]
 gi|312837001|dbj|BAJ34887.1| replication protein [Enterococcus faecalis]
          Length = 496

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|110800255|ref|YP_695934.1| GntR family transcriptional regulator [Clostridium perfringens
          ATCC 13124]
 gi|110674902|gb|ABG83889.1| transcriptional regulator, GntR family [Clostridium perfringens
          ATCC 13124]
          Length = 249

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 19 IHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          I+ +YP         ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 28 INGEYPLNSKLPSEPELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|29377853|ref|NP_816981.1| repE protein [Enterococcus faecalis V583]
 gi|257090960|ref|ZP_05585321.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|29345305|gb|AAO83052.1| repE protein [Enterococcus faecalis V583]
 gi|256999772|gb|EEU86292.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 496

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|182679855|ref|YP_001834001.1| helix-turn-helix type 11 domain-containing protein [Beijerinckia
          indica subsp. indica ATCC 9039]
 gi|182635738|gb|ACB96512.1| Helix-turn-helix type 11 domain protein [Beijerinckia indica
          subsp. indica ATCC 9039]
          Length = 324

 Score = 37.6 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +          +A+ C +S   +++ +  L  AGI V + RG  GG RL
Sbjct: 13 LQARGRVTAQALADECEVSLRTIYRDIDALSAAGIPVYSERGSEGGYRL 61


>gi|85703067|ref|ZP_01034171.1| regulatory protein, IclR [Roseovarius sp. 217]
 gi|85671995|gb|EAQ26852.1| regulatory protein, IclR [Roseovarius sp. 217]
          Length = 274

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRL 66
           +M C   +  P   S+IA    +    + +I+  L   G++    G RG   G RL
Sbjct: 23 AVMECVGSSGRPLTTSEIAVLLDMPTPTVHRIVHQLDMDGLLVQEAGSRGYVPGPRL 79


>gi|84386574|ref|ZP_00989601.1| melibiose operon regulator [Vibrio splendidus 12B01]
 gi|84378679|gb|EAP95535.1| melibiose operon regulator [Vibrio splendidus 12B01]
          Length = 339

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +L Y A H++ P  +  IAE   +   +   + Q 
Sbjct: 204 MLEYIATHHNQPLTVKDIAEHIGLHANYAMNVFQR 238


>gi|152966603|ref|YP_001362387.1| MarR family transcriptional regulator [Kineococcus radiotolerans
           SRS30216]
 gi|151361120|gb|ABS04123.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
           SRS30216]
          Length = 160

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---R 61
              +Y +  L + ++  +   R+S +AE    S   L  + + L K G +   R      
Sbjct: 43  SYFEYAV--LSWLSMQPERTTRMSDLAELVNSSLSRLSHLARRLEKQGWLT--RRPDPTD 98

Query: 62  GGVRLC 67
           G   L 
Sbjct: 99  GRYTLA 104


>gi|327394679|dbj|BAK12101.1| HTH-type transcriptional regulator TtgV TtgV [Pantoea ananatis
           AJ13355]
          Length = 323

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
             ++L     H      + +IA+   +    + +I+  L  A +V +     GG+RL 
Sbjct: 84  AAKILNALGEHPGG-MSLGEIAQVVDLPRSTVQRIVAALDSAELVRSS--GAGGLRLG 138


>gi|239931715|ref|ZP_04688668.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291440083|ref|ZP_06579473.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291342978|gb|EFE69934.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 345

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRIGGYRL 61


>gi|153007413|ref|YP_001368628.1| ROK family protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559301|gb|ABS12799.1| ROK family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 439

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 20/97 (20%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG------ 62
           R+++     +    R ++IA    +S   +  I++ L K G++   E VRGR G      
Sbjct: 59  RLVLALVRRHGALAR-AEIARLTGLSAQTVSVIIRALEKDGLITQGERVRGRVGQPSMPM 117

Query: 63  ----------GVRLCRPADQITILDVVKATEESFFVA 89
                     G+++ R + +I ++D + A  E   + 
Sbjct: 118 RLAADGVFSFGLKIGRRSAEIILMDFLGAIRERRHIT 154


>gi|99078675|ref|YP_611933.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035813|gb|ABF62671.1| transcriptional regulator, GntR family [Ruegeria sp. TM1040]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          +Q+AE   ++   + + L  + + G+V   RG   GV +        +   ++
Sbjct: 37 AQLAERFGVNRHTVRRALADMSEQGLVHARRGA--GVFVAAKPTDYPVGKRIR 87


>gi|289764641|ref|ZP_06524019.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|289716196|gb|EFD80208.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 366

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K++Q L + G + +V+G+ 
Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVIQMLEEEGYLYSVKGKG 73


>gi|237745302|ref|ZP_04575783.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|260495495|ref|ZP_05815621.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|229432531|gb|EEO42743.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|260197032|gb|EEW94553.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
          Length = 475

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K++Q L + G + +V+G+ 
Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVIQMLEEEGYLYSVKGKG 73


>gi|221197954|ref|ZP_03571000.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2M]
 gi|221204488|ref|ZP_03577505.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2]
 gi|221212911|ref|ZP_03585887.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD1]
 gi|221167124|gb|EED99594.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD1]
 gi|221175345|gb|EEE07775.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2]
 gi|221181886|gb|EEE14287.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2M]
          Length = 247

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                + AT+    +      H     L  +   T+VL K   A    L       +V +
Sbjct: 71  AAA--IDATDPVVDIV-----HPYLVALRDASRETAVLGKIQRASIAYL------DVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|254473908|ref|ZP_05087302.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062]
 gi|211957018|gb|EEA92224.1| helix-turn-helix, type 11 domain protein [Pseudovibrio sp. JE062]
          Length = 249

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +        +A+   IS+  LF+ L+ L + G+ +E  +GR GG+RL
Sbjct: 24 LKSGECPTTHDLAKELGISQRTLFRDLELLRERGLPIEADKGRGGGIRL 72


>gi|16762365|ref|NP_457982.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|29143853|ref|NP_807195.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|213052740|ref|ZP_03345618.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|289828400|ref|ZP_06546282.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|25513412|pir||AI0941 probable GntR-family regulatory protein STY3802 [imported] -
          Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|16504669|emb|CAD09555.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi]
 gi|29139489|gb|AAO71055.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|328883103|emb|CCA56342.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 319

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L   G  VE   G  GG RL      P 
Sbjct: 24 SELAERLSVSPRTIRRDIDRLRDLGYPVEATLGAVGGYRLVAGTAMPP 71


>gi|262066340|ref|ZP_06025952.1| transcriptional regulator, GntR family [Fusobacterium
          periodonticum ATCC 33693]
 gi|291379904|gb|EFE87422.1| transcriptional regulator, GntR family [Fusobacterium
          periodonticum ATCC 33693]
          Length = 478

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K+++ L + G + +++G+ 
Sbjct: 32 ENDKFFSVRQISIKYGLNPNTVLKVIKALEEEGYLYSIKGKG 73


>gi|182440644|ref|YP_001828363.1| DeoR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178469160|dbj|BAG23680.1| putative DeoR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 342

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   + + +  L + G  +   +G  GG RL
Sbjct: 26 LAERLEVSPRTVRRDVDRLRELGYPIVAFKGPDGGYRL 63


>gi|291557502|emb|CBL34619.1| Transcriptional regulators [Eubacterium siraeum V10Sc8a]
          Length = 154

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          RVLMY A         + + +  CIS+  +  +++ L K+G +
Sbjct: 39 RVLMYIANSPGKDIFAADLHKHLCISKPSVSALIKKLRKSGYI 81


>gi|284047599|ref|YP_003397938.1| transcriptional regulator, IclR family [Acidaminococcus
          fermentans DSM 20731]
 gi|283951820|gb|ADB46623.1| transcriptional regulator, IclR family [Acidaminococcus
          fermentans DSM 20731]
          Length = 250

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           IR+L   A        +++I++A  + +  +++IL+ L +AG +E    + G   L 
Sbjct: 14 AIRILELYAAQRRESLSLTEISKALGLHKTTVYRILRTLQQAGWME-QSAKTGKYYLG 70


>gi|257877281|ref|ZP_05656934.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|257811447|gb|EEV40267.1| regulatory protein [Enterococcus casseliflavus EC20]
          Length = 302

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + +L Y     +    IS+IA+A  IS     + +Q +  AG++++ RG  
Sbjct: 22 LSMLRYI---GNEKKSISEIAQALQISNAITTRHVQQMEDAGLLDSERGTG 69


>gi|205359959|ref|ZP_02833581.2| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205341797|gb|EDZ28561.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320088480|emb|CBY98239.1| Histidine utilization repressor [Salmonella enterica subsp.
          enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|15236282|ref|NP_195242.1| O-methyltransferase family 2 protein [Arabidopsis thaliana]
 gi|4455342|emb|CAB36723.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|7270467|emb|CAB80233.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|20466674|gb|AAM20654.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|23198188|gb|AAN15621.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|332661074|gb|AEE86474.1| O-methyltransferase family 2 protein [Arabidopsis thaliana]
          Length = 382

 Score = 37.6 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64
           +  P  +++++ A   S   L +I++ LV  GI + +  + G   G 
Sbjct: 63  SSQPVTLAELSSAVSASPSHLRRIMRFLVHQGIFKEIPTKDGLATGY 109


>gi|323463689|gb|ADX75842.1| transcriptional regulator, DeoR family [Staphylococcus
          pseudintermedius ED99]
          Length = 233

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 17 CAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           A+   D P    ++A+A  +S+  + + +Q L   G+ +    G  GG +L
Sbjct: 11 LALIQQDKPMTALELAQALNVSKRTILRDMQELEGKGVQIVAHAGMYGGYQL 62


>gi|312136054|ref|YP_004003392.1| GntR family transcriptional regulator [Caldicellulosiruptor
          owensensis OL]
 gi|311776105|gb|ADQ05592.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          owensensis OL]
          Length = 121

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    + ++A+   I+     ++ Q L + G+ +T RG  
Sbjct: 28 RPGEKLPSVREMAQKFNINPNTAQRVFQELEREGLSKTERGIG 70


>gi|301631285|ref|XP_002944730.1| PREDICTED: acetate operon repressor-like [Xenopus (Silurana)
          tropicalis]
          Length = 247

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           IR L   A H     R++++A+A  ++     ++LQ LV+ G++
Sbjct: 41 AIRALKLMAQHAPDGLRLTELAQALGLTRPTAHRLLQALVQEGML 85


>gi|284042042|ref|YP_003392382.1| IclR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946263|gb|ADB49007.1| transcriptional regulator, IclR family [Conexibacter woesei DSM
          14684]
          Length = 254

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + +LM  A  +D       IAE   I     + +L  LV AG++  VRG  G   L 
Sbjct: 24 AVAILMAVA-QSDNGLTTRAIAERVAIGRQAAYHLLHTLVGAGVL--VRGEGGRYMLG 78


>gi|238912213|ref|ZP_04656050.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|229492671|ref|ZP_04386472.1| transcriptional regulator, MarR family [Rhodococcus erythropolis
           SK121]
 gi|229320330|gb|EEN86150.1| transcriptional regulator, MarR family [Rhodococcus erythropolis
           SK121]
          Length = 169

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
           VL   +   D+  ++S +A+    S   L  ++  + KAG V  E +RG RG
Sbjct: 56  VLAALSDAPDHKLQLSVLAQRANASLSRLSHVITKMEKAGWVKREVIRGSRG 107


>gi|256825602|ref|YP_003149562.1| transcriptional regulator [Kytococcus sedentarius DSM 20547]
 gi|256688995|gb|ACV06797.1| predicted transcriptional regulator [Kytococcus sedentarius DSM
          20547]
          Length = 238

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R L+  ++          ++A    I+E  + + +  L   G  + +  G  G  RL
Sbjct: 7  RALVLLSLLQTRRAWTALELARHLDIAERTVRRDISRLRSLGYDIRSAPGPGGTYRL 63


>gi|195874212|ref|ZP_02701248.2| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|195630134|gb|EDX48774.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|149187376|ref|ZP_01865674.1| melibiose operon regulatory protein [Vibrio shilonii AK1]
 gi|148838912|gb|EDL55851.1| melibiose operon regulatory protein [Vibrio shilonii AK1]
          Length = 334

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +L Y A H++ P  I  IAE   +   +   + Q 
Sbjct: 204 MLEYIATHHNQPLTIKDIAEHIGLHTNYAMNVFQR 238


>gi|220928649|ref|YP_002505558.1| ArsR family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219998977|gb|ACL75578.1| transcriptional regulator, ArsR family [Clostridium
          cellulolyticum H10]
          Length = 300

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+ R    I+++   A ++     I QIAE   +S   +   ++ L  AGIV + R
Sbjct: 16 LSSRVR--IKIINILAQNS---LNIKQIAEELGLSSAIVTMHVKKLEAAGIVHSER 66


>gi|297199166|ref|ZP_06916563.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|297147311|gb|EDY59148.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 313

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 2  LQSRPSMTAAELARELEVSERTVSRDAQALSEAGVPVYADRGRAGGYRL 50


>gi|227548581|ref|ZP_03978630.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227079342|gb|EEI17305.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 113

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +++L + A     P  + ++A+   +S+  +   L+ L  AG++
Sbjct: 42 LQILSHLAGEGCGPTTVGELADILDLSQPTVSHHLKKLTDAGLL 85


>gi|62182529|ref|YP_218946.1| GntR family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|197251496|ref|YP_002148998.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|198243797|ref|YP_002217994.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200388647|ref|ZP_03215259.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|205354355|ref|YP_002228156.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|205360636|ref|ZP_02685002.2| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|207859256|ref|YP_002245907.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|62130162|gb|AAX67865.1| putative regulatory protein, gntR family [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|197215199|gb|ACH52596.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|197938313|gb|ACH75646.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605745|gb|EDZ04290.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|205274136|emb|CAR39146.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|205348225|gb|EDZ34856.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711059|emb|CAR35431.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|322626470|gb|EFY23276.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322666814|gb|EFY62990.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322684027|gb|EFY80036.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|323197656|gb|EFZ82789.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200770|gb|EFZ85841.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323243933|gb|EGA27944.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|297527131|ref|YP_003669155.1| transcriptional regulator, MarR family [Staphylothermus
          hellenicus DSM 12710]
 gi|297256047|gb|ADI32256.1| transcriptional regulator, MarR family [Staphylothermus
          hellenicus DSM 12710]
          Length = 114

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MHL----TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          M L    + +T   + +L   + +N     I ++++   +    + K ++ L +AG+V +
Sbjct: 35 MKLGDILSSKTR--LLILYSLSRNNG--LSIKELSKITGLPISVISKHVKKLEEAGLVIS 90

Query: 57 --VRGRRG 62
              G RG
Sbjct: 91 GLKNGNRG 98


>gi|284042062|ref|YP_003392402.1| ArsR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946283|gb|ADB49027.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM
          14684]
          Length = 105

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +R++   +  ++     + + +   +S+  L K +  LV AG V++ +G R G R
Sbjct: 14 LRLMTMLSAVSEAEF--ATLRDRLDVSDSVLSKHIATLVGAGYVKSRKGVRVGRR 66


>gi|282862253|ref|ZP_06271316.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
 gi|282563278|gb|EFB68817.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
          Length = 322

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPAMTAAELAGELEVSERTVTRDAQALSEAGVPVYADRGRTGGYRL 61


>gi|169828661|ref|YP_001698819.1| hypothetical protein Bsph_3178 [Lysinibacillus sphaericus C3-41]
 gi|168993149|gb|ACA40689.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 314

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +   ++      I ++AE C +S   + + L  L + G+ + +  G  GG R+ R 
Sbjct: 10 LMMKVNERKKFTIQEMAEECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRVLRE 65


>gi|319893265|ref|YP_004150140.1| transcriptional regulator, DeoR family [Staphylococcus
          pseudintermedius HKU10-03]
 gi|317162961|gb|ADV06504.1| transcriptional regulator, DeoR family [Staphylococcus
          pseudintermedius HKU10-03]
          Length = 233

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 17 CAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           A+   D P    ++A+A  +S+  + + +Q L   G+ +    G  GG +L
Sbjct: 11 LALIQQDKPMTALELAQALNVSKRTILRDMQELEGKGVQIVAHAGMYGGYQL 62


>gi|225574109|ref|ZP_03782720.1| hypothetical protein RUMHYD_02174 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038660|gb|EEG48906.1| hypothetical protein RUMHYD_02174 [Blautia hydrogenotrophica DSM
          10507]
          Length = 306

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
                  ++AE   +S   + + ++ L KAGI V TV+G +GG+R
Sbjct: 15 QKEKCTAPELAEKFEVSRRTINRDIEALCKAGIPVCTVQGAKGGIR 60


>gi|28199256|ref|NP_779570.1| heat-inducible transcription repressor [Xylella fastidiosa
          Temecula1]
 gi|182681982|ref|YP_001830142.1| heat-inducible transcription repressor [Xylella fastidiosa M23]
 gi|32129616|sp|Q87BS6|HRCA_XYLFT RecName: Full=Heat-inducible transcription repressor hrcA
 gi|238691053|sp|B2I6F8|HRCA_XYLF2 RecName: Full=Heat-inducible transcription repressor hrcA
 gi|28057362|gb|AAO29219.1| heat-inducible transcriptional repressor [Xylella fastidiosa
          Temecula1]
 gi|182632092|gb|ACB92868.1| heat-inducible transcription repressor HrcA [Xylella fastidiosa
          M23]
 gi|307578247|gb|ADN62216.1| heat-inducible transcription repressor [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 349

 Score = 37.6 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56
          L  R+   +R L+ C I N  P     +A+     IS   +  IL  L + G++ +
Sbjct: 9  LDSRSRQLLRTLISCYIQNGEPIGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64


>gi|325289325|ref|YP_004265506.1| helix-turn-helix, type 11 domain-containing protein
          [Syntrophobotulus glycolicus DSM 8271]
 gi|324964726|gb|ADY55505.1| helix-turn-helix, type 11 domain-containing protein
          [Syntrophobotulus glycolicus DSM 8271]
          Length = 304

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +  I +L+             ++AE   +SE  +++ ++ L  AGI +   +G
Sbjct: 1  MQINRLFE-TIYILLD-----KKTTTAKKLAERFEVSERTIYRDIETLSSAGIPIYASQG 54

Query: 60 RRGGVRL 66
          + GG+ L
Sbjct: 55 KGGGISL 61


>gi|306831258|ref|ZP_07464418.1| GntR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325978162|ref|YP_004287878.1| GntR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|304426494|gb|EFM29606.1| GntR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325178090|emb|CBZ48134.1| GntR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 122

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++AE   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68


>gi|288905188|ref|YP_003430410.1| transcriptional regulator, GntR family [Streptococcus
          gallolyticus UCN34]
 gi|288731914|emb|CBI13479.1| Putative transcriptional regulator, GntR family [Streptococcus
          gallolyticus UCN34]
          Length = 122

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++AE   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68


>gi|302546043|ref|ZP_07298385.1| ArsR family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302463661|gb|EFL26754.1| ArsR family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 162

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R  +  A+        S +A    +S   +   L  L++AG+V   R GR    RL  PA
Sbjct: 26 RARILLALAEGRALPASVLATEAGVSASTVSGHLAKLLEAGVVRVERQGRHRYYRLTGPA 85

Query: 71 DQITILDVVKAT 82
              + + ++A 
Sbjct: 86 ----VGEAIEAL 93


>gi|256377566|ref|YP_003101226.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM
          43827]
 gi|255921869|gb|ACU37380.1| Helix-turn-helix type 11 domain protein [Actinosynnema mirum DSM
          43827]
          Length = 314

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +AE   +S   + + +  L + G  +  V+G  GG RL
Sbjct: 26 LAERLDVSARTVRRDVDRLRELGYPIAAVKGPDGGYRL 63


>gi|171779316|ref|ZP_02920280.1| hypothetical protein STRINF_01161 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171281933|gb|EDT47364.1| hypothetical protein STRINF_01161 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 122

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++AE   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68


>gi|171185897|ref|YP_001794816.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus
          V24Sta]
 gi|170935109|gb|ACB40370.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus
          V24Sta]
          Length = 239

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-RRGGVRLCRPADQI 73
          +Y  +         +I++A  I    +++ L  L KAG V   RG R    +   P  ++
Sbjct: 20 IYITLVERGALTAREISDALGIPYTKVYQHLNRLEKAGAVNQERGSRPAKFK-AVPPSEV 78

Query: 74 ------TILDVVKATEESFF 87
                T  DV+K  + +F 
Sbjct: 79 YRRLVNTASDVLKTLKPTFD 98


>gi|152997221|ref|YP_001342056.1| regulatory protein GntR HTH [Marinomonas sp. MWYL1]
 gi|150838145|gb|ABR72121.1| regulatory protein GntR HTH [Marinomonas sp. MWYL1]
          Length = 248

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           D       + E   +S+  + + ++ L   G+++T  G  GG  L  
Sbjct: 33 GDRLPSEKDLIEQYEVSKGTVREAMKALEVEGLIKTKPGPGGGAWLTE 80


>gi|14590882|ref|NP_142954.1| hypothetical protein PH1045 [Pyrococcus horikoshii OT3]
 gi|3257460|dbj|BAA30143.1| 193aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 193

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +++Y  +  D     S+IAE   +S   + +    L + GI++ +     G+ L R AD
Sbjct: 46 IMIYKMLREDGRISDSRIAERLGVSVTTVRRHRLKLQREGILQVI-----GLLLLRAAD 99


>gi|320546637|ref|ZP_08040949.1| GntR family transcriptional regulator [Streptococcus equinus ATCC
          9812]
 gi|320448692|gb|EFW89423.1| GntR family transcriptional regulator [Streptococcus equinus ATCC
          9812]
          Length = 122

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++AE   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVRELAEEAGVNPNTMQRAFSELEREGMVYSQR 68


>gi|297798406|ref|XP_002867087.1| O-methyltransferase family 2 protein [Arabidopsis lyrata subsp.
          lyrata]
 gi|297312923|gb|EFH43346.1| O-methyltransferase family 2 protein [Arabidopsis lyrata subsp.
          lyrata]
          Length = 368

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64
          +  P  +++++ A   S   L +I++ LV  GI + +  + G   G 
Sbjct: 49 SSQPVTLAELSSAVSASPSHLRRIMRFLVHQGIFKEIPTKDGLATGY 95


>gi|229141840|ref|ZP_04270367.1| Transcriptional regulator, ArsR [Bacillus cereus BDRD-ST26]
 gi|228641596|gb|EEK97900.1| Transcriptional regulator, ArsR [Bacillus cereus BDRD-ST26]
          Length = 306

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L       +       +A+ C +SE  + + LQ L KA +V +   + G   L +  
Sbjct: 238 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 289

Query: 71  DQI 73
             I
Sbjct: 290 KNI 292


>gi|206976646|ref|ZP_03237551.1| transcriptional regulator, ArsR family [Bacillus cereus H3081.97]
 gi|217962588|ref|YP_002341160.1| transcriptional regulator, ArsR family [Bacillus cereus AH187]
 gi|222098557|ref|YP_002532615.1| transcriptional regulator, arsr family [Bacillus cereus Q1]
 gi|206745132|gb|EDZ56534.1| transcriptional regulator, ArsR family [Bacillus cereus H3081.97]
 gi|217063050|gb|ACJ77300.1| transcriptional regulator, ArsR family [Bacillus cereus AH187]
 gi|221242616|gb|ACM15326.1| transcriptional regulator, ArsR family [Bacillus cereus Q1]
          Length = 368

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L       +       +A+ C +SE  + + LQ L KA +V +   + G   L +  
Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 351

Query: 71  DQI 73
             I
Sbjct: 352 KNI 354


>gi|161524745|ref|YP_001579757.1| IclR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350501|ref|YP_001946129.1| IclR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160342174|gb|ABX15260.1| transcriptional regulator, IclR family [Burkholderia multivorans
           ATCC 17616]
 gi|189334523|dbj|BAG43593.1| IclR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 247

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                + AT+    +      H     L  +   T+VL K   A    L       +V +
Sbjct: 71  AAA--IDATDPVVDIV-----HPYLVALRDASRETAVLGKIQRASIAYL------DVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|52141727|ref|YP_085103.1| ArsR family transcriptional regulator [Bacillus cereus E33L]
 gi|51975196|gb|AAU16746.1| transcriptional regulator, ArsR family [Bacillus cereus E33L]
          Length = 368

 Score = 37.6 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L       +       +A+ C +SE  + + LQ L KA +V +   + G   L +  
Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKANLVTSK--KDGKYVLYKSQ 351

Query: 71  DQI 73
             I
Sbjct: 352 KNI 354


>gi|259415464|ref|ZP_05739385.1| phosphonate metabolism transcriptional regulator PhnF
          [Silicibacter sp. TrichCH4B]
 gi|259348694|gb|EEW60456.1| phosphonate metabolism transcriptional regulator PhnF
          [Silicibacter sp. TrichCH4B]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          +Q+AE   ++   + + L  + + G+V   RG   GV +        +   ++
Sbjct: 37 AQLAERFGVNRHTVRRALADMAEQGLVHARRGA--GVFVAAKPTDYPVGKRIR 87


>gi|289810265|ref|ZP_06540894.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 158

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 40 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 73


>gi|213426112|ref|ZP_03358862.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213582707|ref|ZP_03364533.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-0664]
 gi|213610026|ref|ZP_03369852.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E98-2068]
          Length = 243

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|209559995|ref|YP_002286467.1| hypothetical protein Spy49_1505c [Streptococcus pyogenes NZ131]
 gi|209541196|gb|ACI61772.1| hypothetical protein Spy49_1505c [Streptococcus pyogenes NZ131]
          Length = 115

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69
          R+  Y  I ++      +I     I     L  I+  +V  G ++ + R + GG  L   
Sbjct: 11 RIFCYLPIGSNMMVNSKEICRTFDIKDPKTLRDIIHGMVMKGYLIGSSRRKGGGYYLIDD 70

Query: 70 ----ADQITILD 77
              A+ I+ L+
Sbjct: 71 DDERAEAISSLE 82


>gi|168244177|ref|ZP_02669109.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|194449742|ref|YP_002048071.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|204930200|ref|ZP_03221177.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|194408046|gb|ACF68265.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|204320604|gb|EDZ05806.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205336838|gb|EDZ23602.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|157283838|ref|YP_001468106.1| BadM/Rrf2 family transcriptional regulator [Kineococcus
           radiotolerans SRS30216]
 gi|151362980|gb|ABS05982.1| transcriptional regulator, BadM/Rrf2 family [Kineococcus
           radiotolerans SRS30216]
          Length = 269

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFK-ILQPLVKAGIVETV 57
           +R+L+   + +  P    ++A+A  +S   L + +L  LV  G +E V
Sbjct: 72  VRILLALQVRSGQPLSTPELADAAMVSAAHLRRGVLPRLVDGGHLEAV 119


>gi|15236280|ref|NP_195241.1| O-methyltransferase family 2 protein [Arabidopsis thaliana]
 gi|4455341|emb|CAB36722.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|7270466|emb|CAB80232.1| O-methyltransferase-like protein [Arabidopsis thaliana]
 gi|332661073|gb|AEE86473.1| O-methyltransferase family 2 protein [Arabidopsis thaliana]
          Length = 325

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64
          +  P  +S+++ A   S   L +I++ LV  G+ + V  + G   G 
Sbjct: 49 SSQPVTLSELSSAVSASPSHLRRIMRFLVHQGLFKEVPTKDGLATGY 95


>gi|296333018|ref|ZP_06875475.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674878|ref|YP_003866550.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|317374855|sp|E0U174|BIRA_BACPZ RecName: Full=Bifunctional protein BirA; Includes: RecName:
          Full=Biotin operon repressor; Includes: RecName:
          Full=Biotin--[acetyl-CoA-carboxylase] synthetase;
          AltName: Full=Biotin--protein ligase
 gi|773349|gb|AAB60184.1| BirA protein [Bacillus subtilis]
 gi|296149869|gb|EFG90761.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413122|gb|ADM38241.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 325

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 1  MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T R D     L+   +          +I++A   S   ++K ++ L K G  VE VR
Sbjct: 1  MRSTLRKD-----LIELFSQAGSEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVR 55

Query: 59 GRRGGVRLCRPA-----DQITIL 76
           +  G RL +        +I   
Sbjct: 56 RK--GYRLIKKPGKLSESEIRFG 76


>gi|46198439|ref|YP_004106.1| IclR family transcriptional regulator [Thermus thermophilus HB27]
 gi|46196061|gb|AAS80479.1| transcriptional regulator, IclR family [Thermus thermophilus
          HB27]
          Length = 274

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          G+RVL   A   + P  +  +AE   +++  L+++L+ L +AG VE
Sbjct: 40 GLRVLEALAQAGESP--LGPLAERVGLAKSTLYRLLRALAQAGFVE 83


>gi|71898352|ref|ZP_00680525.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Ann-1]
 gi|71731875|gb|EAO33933.1| Negative regulator of class I heat shock protein [Xylella
          fastidiosa Ann-1]
          Length = 349

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVET 56
          L  R+   +R L+ C I N  P     +A+     IS   +  IL  L + G++ +
Sbjct: 9  LDSRSRQLLRTLISCYIQNGEPIGSKTLAQQAGLDISPATIRNILADLEELGLLNS 64


>gi|288559255|sp|Q0VPA7|Y1543_ALCBS RecName: Full=UPF0761 membrane protein ABO_1543
          Length = 429

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 28/124 (22%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQP------------LVKAGIVETVRGRRGGVRL 66
             +    R  +I            +++Q             LV A ++   R   GG  L
Sbjct: 303 QQSGKVLRSKEI-----------RQVMQESGISQWDEFRNLLVNANLIR--RTDEGGYIL 349

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            R    I++  +V                    P   +  L S + +A       L   S
Sbjct: 350 SRDLRNISLGQLVAMLPWPAHTQLRVRQQPESLPWEQA--LKSRMDEAREGMMAPLD-IS 406

Query: 127 IECL 130
           ++ L
Sbjct: 407 LDAL 410


>gi|257874692|ref|ZP_05654345.1| replication protein E [Enterococcus casseliflavus EC10]
 gi|257808856|gb|EEV37678.1| replication protein E [Enterococcus casseliflavus EC10]
          Length = 510

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG----IVETVRGRRGGVRLC 67
           +   ++ E+  I +  L K+L+ L +      +V    GR GG+ L 
Sbjct: 406 STKKELTESLKIPKRSLDKVLKQLREENKIHFLVRA--GRNGGIMLA 450


>gi|257868364|ref|ZP_05648017.1| plasmid replication protein [Enterococcus casseliflavus EC30]
 gi|257802478|gb|EEV31350.1| plasmid replication protein [Enterococcus casseliflavus EC30]
          Length = 499

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG----IVETVRGRRGGVRLC 67
           +   ++ E+  I +  L K+L+ L +      +V    GR GG+ L 
Sbjct: 395 STKKELTESLKIPKRSLDKVLKQLREENKIHFLVRA--GRNGGIMLA 439


>gi|237750146|ref|ZP_04580626.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374333|gb|EEO24724.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 190

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 12  RVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +VL Y + + D  + ++Q  IA A  I+   L + L+ L   GI+ T +G+
Sbjct: 136 KVLSYLSHNKDSLHTLTQRHIANALNIAPESLSRTLKALKTQGILTTHKGK 186


>gi|15674098|ref|NP_268273.1| zinc transport transcription regulator [Lactococcus lactis subsp.
          lactis Il1403]
 gi|281492776|ref|YP_003354756.1| MarR family transcriptional regulator [Lactococcus lactis subsp.
          lactis KF147]
 gi|12725171|gb|AAK06214.1|AE006439_11 zinc transport transcriptional regulator [Lactococcus lactis
          subsp. lactis Il1403]
 gi|281376428|gb|ADA65914.1| Transcriptional regulator, MarR family [Lactococcus lactis subsp.
          lactis KF147]
          Length = 145

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A   +  +  ++IAE   IS   + K L+ L +  ++++ R
Sbjct: 41 HILMLLA---EQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSSR 84


>gi|16767334|ref|NP_462949.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|194444714|ref|YP_002043330.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|197261755|ref|ZP_03161829.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|205357138|ref|ZP_02345193.2| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205357711|ref|ZP_02572740.2| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|16422634|gb|AAL22908.1| putative gntR family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|194403377|gb|ACF63599.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|197240010|gb|EDY22630.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|205323715|gb|EDZ11554.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205330029|gb|EDZ16793.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|261249185|emb|CBG27046.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. D23580]
 gi|267996364|gb|ACY91249.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301160576|emb|CBW20106.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. SL1344]
 gi|321225361|gb|EFX50419.1| Transcriptional regulator, GntR family [Salmonella enterica
          subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132413|gb|ADX19843.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
 gi|332990897|gb|AEF09880.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 240

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|55980476|ref|YP_143773.1| transcriptional regulator [Thermus thermophilus HB8]
 gi|55771889|dbj|BAD70330.1| transcriptional regulator [Thermus thermophilus HB8]
          Length = 274

 Score = 37.6 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          G+RVL   A   + P  +  +AE   +++  L+++L+ L +AG VE
Sbjct: 40 GLRVLEALAQAGESP--LGPLAERVGLAKSTLYRLLRALAQAGFVE 83


>gi|224538774|ref|ZP_03679313.1| hypothetical protein BACCELL_03669 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519622|gb|EEF88727.1| hypothetical protein BACCELL_03669 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 124

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVR 58
          LT+ T   I VL   +    +P R +Q+     I   +L  IL  L   G+V     +  
Sbjct: 2  LTELTQTAIAVLCDISA-GSHPYRTAQL----HIDPEYLIGILTKLETGGLVRHRDTSFA 56

Query: 59 GRRGGVRLCRPADQITILDVVKATEESFF 87
                 L RP   I++LDV++  +E   
Sbjct: 57 DTLSSYELVRPYTSISLLDVLETLDEHLN 85


>gi|161617200|ref|YP_001591165.1| hypothetical protein SPAB_05041 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161366564|gb|ABX70332.1| hypothetical protein SPAB_05041 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 243

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|170738620|ref|YP_001767275.1| AsnC family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192894|gb|ACA14841.1| transcriptional regulator, AsnC family [Methylobacterium sp.
          4-46]
          Length = 153

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M    RTD  +R+L       D     +++A+   +S     + +Q L++ G++  VR
Sbjct: 1  MRAPDRTD--LRMLRLL--QEDGRLTNAELAQRVNLSPATCHRRMQRLLREGLITGVR 54


>gi|124441841|gb|ABN11538.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441845|gb|ABN11541.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441849|gb|ABN11544.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441869|gb|ABN11559.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441873|gb|ABN11562.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441877|gb|ABN11565.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
 gi|124441881|gb|ABN11568.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus subtilis]
          Length = 319

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 14 LMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA- 70
          L+   +          +I++A   S   ++K ++ L K G  VE VR +  G RL +   
Sbjct: 3  LIELFSQAGSEFISGQKISDALGCSRTAVWKHIEELRKEGYEVEAVRRK--GYRLIKKPG 60

Query: 71 ----DQITIL 76
               +I   
Sbjct: 61 KLSESEIRFG 70


>gi|108805528|ref|YP_645465.1| GntR family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108766771|gb|ABG05653.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 239

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +     ++I E   +S   + +  Q LV  G+V  V GR 
Sbjct: 22 EGEQMPTEAEICERYGVSRHTVRQAFQSLVADGLVYRVPGRG 63


>gi|86739028|ref|YP_479428.1| putative transcriptional regulator [Frankia sp. CcI3]
 gi|86565890|gb|ABD09699.1| putative transcriptional regulator [Frankia sp. CcI3]
          Length = 388

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                +IA+   +S   +++ L+ L +AG+ V   RG  GG RL
Sbjct: 17 GRLTAREIADELEVSVRTVYRDLESLAEAGVPVLADRGATGGYRL 61


>gi|307943578|ref|ZP_07658922.1| regulatory protein GntR HTH [Roseibium sp. TrichSKD4]
 gi|307773208|gb|EFO32425.1| regulatory protein GntR HTH [Roseibium sp. TrichSKD4]
          Length = 257

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 10 GIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           IR  +   +  +    P   ++++E   +S   + + L+ L    ++ + RG  GG
Sbjct: 19 AIRTAIIDGHLVVEERLP-SEAELSERFEVSRSTVREALKRLAAQNLIRSERGSSGG 74


>gi|226360159|ref|YP_002777937.1| MarR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226238644|dbj|BAH48992.1| putative MarR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 169

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
           VL   +   +   ++S +A+    S   L  ++  + KAG V  E++RG RG
Sbjct: 56  VLASLSGEANRRLQLSLLAQRANASLSRLSHVVTKMEKAGWVRRESIRGSRG 107


>gi|163741211|ref|ZP_02148603.1| transcriptional regulator, GntR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385564|gb|EDQ09941.1| transcriptional regulator, GntR family protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 253

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           ++     +++AE   +S   + + L+ L    ++ T RG  GG  + R       A QIT
Sbjct: 41  DERLPSEAEMAEQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFEEAYAQQIT 100

Query: 75  ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119
              ++ +     F   C A + ++  C PL  +      L       F
Sbjct: 101 TSTLLLSMNAVSFDTACEARYALERACAPLAATRRTADHLATMRAEIF 148


>gi|58039045|ref|YP_191009.1| ArsR family transcriptional regulator [Gluconobacter oxydans
          621H]
 gi|58001459|gb|AAW60353.1| Transcriptional regulator ArsR family [Gluconobacter oxydans
          621H]
          Length = 127

 Score = 37.6 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM  +   D  + +S+I     I +  L + L  L +AG++E+ R
Sbjct: 26 LMILSALLDSTHAVSEIETMTGIGQPTLSQHLGALRRAGLIESQR 70


>gi|329924212|ref|ZP_08279399.1| arabinose metabolism transcriptional repressor [Paenibacillus sp.
          HGF5]
 gi|328940822|gb|EGG37135.1| arabinose metabolism transcriptional repressor [Paenibacillus sp.
          HGF5]
          Length = 363

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +          +IA+   +S   + +    L K G +E ++G+       R   
Sbjct: 26 LQAGKQVPSEHEIADQFGVSRQTVRQTFGELEKEGWLERIQGKG---TFARNPA 76


>gi|307327776|ref|ZP_07606959.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306886488|gb|EFN17491.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 313

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +        +++A    +SE  + +    L +AGI V   RGR GG RL
Sbjct: 1  MVLLLQARPSITGAELARELEVSERTVTRDAAALSEAGIPVYADRGRAGGYRL 53


>gi|300114551|ref|YP_003761126.1| Crp/Fnr family transcriptional regulator [Nitrosococcus watsonii
           C-113]
 gi|299540488|gb|ADJ28805.1| transcriptional regulator, Crp/Fnr family [Nitrosococcus watsonii
           C-113]
          Length = 214

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 12  RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55
           R L+  AI  +    I +      IA+    S   + +I+  L   G +E
Sbjct: 149 RTLLDLAIEKEGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198


>gi|56415913|ref|YP_152988.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364842|ref|YP_002144479.1| GntR-family regulatory protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|224585880|ref|YP_002639679.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|56130170|gb|AAV79676.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096319|emb|CAR61921.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|224470408|gb|ACN48238.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322613169|gb|EFY10113.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322619204|gb|EFY16087.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322626070|gb|EFY22882.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322632417|gb|EFY29165.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635101|gb|EFY31822.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642696|gb|EFY39286.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322647985|gb|EFY44457.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322650735|gb|EFY47136.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652918|gb|EFY49255.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322657233|gb|EFY53513.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322662279|gb|EFY58494.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322672084|gb|EFY68199.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322675806|gb|EFY71878.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322681778|gb|EFY77804.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322717027|gb|EFZ08598.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323193299|gb|EFZ78514.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323207225|gb|EFZ92177.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211427|gb|EFZ96268.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556152]
 gi|323218527|gb|EGA03235.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220990|gb|EGA05422.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225966|gb|EGA10185.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231646|gb|EGA15758.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236105|gb|EGA20183.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239473|gb|EGA23522.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323249296|gb|EGA33213.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250461|gb|EGA34344.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258915|gb|EGA42567.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260160|gb|EGA43783.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265279|gb|EGA48776.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270501|gb|EGA53947.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625786|gb|EGE32131.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326629482|gb|EGE35825.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
          Length = 243

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA A  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARAYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|330809130|ref|YP_004353592.1| GntR family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327377238|gb|AEA68588.1| putative transcription factor, GntR family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 243

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 14 LMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          ++   +    +     S +A    ++ + L   L  L + G++ET RGR GG  +C    
Sbjct: 26 MIDLGLLVEGEQLPSESTLATQLGVATVTLRDALAALRERGVIETRRGRNGGSFICAAPQ 85

Query: 72 Q 72
           
Sbjct: 86 T 86


>gi|319792579|ref|YP_004154219.1| GntR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595042|gb|ADU36108.1| GntR domain protein [Variovorax paradoxus EPS]
          Length = 285

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 20/121 (16%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------GG-VRLCRP 69
              D     S I +A  +S   + + L  L   G+VET+ G          GG  RL   
Sbjct: 53  RPGDKLPTESAIMQAYGVSRTVVREALSKLQAGGLVETLHGVGTFVLQPRPGGVFRL--D 110

Query: 70  ADQI--TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
             +I  ++ DV+   E    +            L  S      L     A  D     +I
Sbjct: 111 PGEIAASV-DVLAVLELRISL------ETESAGLAASRRTEEQLVAMRQALDDFEHNVTI 163

Query: 128 E 128
            
Sbjct: 164 A 164


>gi|312138661|ref|YP_004005997.1| DeoR family transcriptional regulator [Rhodococcus equi 103S]
 gi|325676270|ref|ZP_08155949.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|311888000|emb|CBH47312.1| putative DeoR family transcriptional regulator [Rhodococcus equi
          103S]
 gi|325552831|gb|EGD22514.1| DeoR-family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 322

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          ++AE   I+   + + +  L   G  V+   G  GG RL   A+
Sbjct: 25 ELAERLDITPRTVRRDVDKLRGLGYPVDATVGVGGGYRLGAGAE 68


>gi|262370098|ref|ZP_06063425.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262315137|gb|EEY96177.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 256

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+      I  ++     +     +  I+    +S+   ++ L+ LV AG+++ + G 
Sbjct: 1  MALSSFGK--ILTVLDLFSVSRPIINVDIISAELGLSQPTSYRYLKELVSAGLLQRLSGT 58

Query: 61 RGGVRLCRPADQITILD-VVKATEESFFV 88
           G   L     QI +LD + + T+    +
Sbjct: 59 SGDYTLG---SQIAVLDYISRTTDPLLQI 84


>gi|320011193|gb|ADW06043.1| DeoR family transcriptional regulator [Streptomyces flavogriseus
          ATCC 33331]
          Length = 348

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +S   + +  Q L +AG+ V   RGR GG RL
Sbjct: 36 MVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYADRGRAGGYRL 88


>gi|239830906|ref|ZP_04679235.1| Xylose repressor [Ochrobactrum intermedium LMG 3301]
 gi|239823173|gb|EEQ94741.1| Xylose repressor [Ochrobactrum intermedium LMG 3301]
          Length = 459

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 20/97 (20%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG------ 62
           R+++     +    R + IA    +S   +  I++ L K G++   E VRGR G      
Sbjct: 79  RLVLALVRRHGALAR-ADIARLTGLSAQTVSVIIRALEKDGLITQGERVRGRVGQPSMPM 137

Query: 63  ----------GVRLCRPADQITILDVVKATEESFFVA 89
                     G+++ R + +I ++D + A  E   + 
Sbjct: 138 RLAADGVFSFGLKIGRRSAEIILMDFLGAIRERRHIT 174


>gi|226360902|ref|YP_002778680.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226239387|dbj|BAH49735.1| putative IclR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 270

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 16/106 (15%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +  +     ++IA    + +  + +++  L + G VE   G RG  +L           V
Sbjct: 34  VAAEGRVGATEIAMRLGVHKSTVSRLIASLQQRGFVE-EAGVRGKYQLG--------FAV 84

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           V+  E +   +      + +C       L     + +N    VL  
Sbjct: 85  VRLAEATVARSGLVEVAQPECD-----RLADAFGETVN--LAVLDG 123


>gi|222148172|ref|YP_002549129.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
 gi|221735160|gb|ACM36123.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
          Length = 114

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +R+++ C +       + ++ E   I +  L + L  L +AGIVET R G++   RL   
Sbjct: 37 VRLMLVCTLVEGE-WSVGELEEKLDIHQPTLSQQLTVLREAGIVETRREGKQIFYRLTEA 95


>gi|217976298|ref|YP_002360445.1| regulatory protein ArsR [Methylocella silvestris BL2]
 gi|217501674|gb|ACK49083.1| regulatory protein ArsR [Methylocella silvestris BL2]
          Length = 114

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 14/42 (33%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H        +IA    +    L      L +AG++ + R
Sbjct: 25 LVRHEPDGLSAGEIARRLGVPHNTLSTHFSVLARAGLIRSER 66


>gi|150401183|ref|YP_001324949.1| signal transduction protein [Methanococcus aeolicus Nankai-3]
 gi|150013886|gb|ABR56337.1| putative signal transduction protein with CBS domains
          [Methanococcus aeolicus Nankai-3]
          Length = 302

 Score = 37.6 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-------- 65
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG          
Sbjct: 14 LIAIYEEKNKAVKGTEIAIKLNRNPGTIRNQMQALRALNLVDGVPGPKGGYVPTGQAYRS 73

Query: 66 --LCRPADQITI 75
            L      IT+
Sbjct: 74 IGLLCDKKDITV 85


>gi|329923022|ref|ZP_08278538.1| FCD domain protein [Paenibacillus sp. HGF5]
 gi|328941795|gb|EGG38080.1| FCD domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
             D      ++A++  IS   L +  + L + G++E   G  GG  L +  D
Sbjct: 29 APGDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79


>gi|261408114|ref|YP_003244355.1| GntR domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261284577|gb|ACX66548.1| GntR domain protein [Paenibacillus sp. Y412MC10]
          Length = 232

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
             D      ++A++  IS   L +  + L + G++E   G  GG  L +  D
Sbjct: 29 APGDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79


>gi|126698110|ref|YP_001087007.1| DeoR family transcriptional regulator [Clostridium difficile 630]
 gi|254974131|ref|ZP_05270603.1| DeoR family transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255091532|ref|ZP_05321010.1| DeoR family transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255099637|ref|ZP_05328614.1| DeoR family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255305521|ref|ZP_05349693.1| DeoR family transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255313259|ref|ZP_05354842.1| DeoR family transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255515949|ref|ZP_05383625.1| DeoR family transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649040|ref|ZP_05395942.1| DeoR family transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260682231|ref|YP_003213516.1| DeoR family transcriptional regulator [Clostridium difficile
          CD196]
 gi|260685830|ref|YP_003216963.1| DeoR family transcriptional regulator [Clostridium difficile
          R20291]
 gi|306519153|ref|ZP_07405500.1| DeoR-family transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115249547|emb|CAJ67364.1| Transcriptional regulator, DeoR family [Clostridium difficile]
 gi|260208394|emb|CBA60917.1| DeoR-family transcriptional regulator [Clostridium difficile
          CD196]
 gi|260211846|emb|CBE02259.1| DeoR-family transcriptional regulator [Clostridium difficile
          R20291]
          Length = 303

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + + T+  I +L+     N       ++A+   +S   +++ ++ L  +G+ V   +G
Sbjct: 1  MKINRLTEI-IVILL-----NKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKG 54

Query: 60 RRGGVRLCRPADQITI 75
          + GG+ L    ++ +I
Sbjct: 55 KGGGISLI---EEYSI 67


>gi|21227136|ref|NP_633058.1| transcriptional repressor [Methanosarcina mazei Go1]
 gi|20905467|gb|AAM30730.1| Transcriptional repressor [Methanosarcina mazei Go1]
          Length = 217

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MH  +  +Y +  ++Y    N  P +  QIAE   +S   + ++++ L   G VE     
Sbjct: 1   MHTDRLEEY-LETILYLITKNQSPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYK--P 57

Query: 61  RGGVRLCRPADQITIL-----DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
             GV L     +  +       V++         +   +HK  C L       +V    L
Sbjct: 58  YQGVELTEKGAEEAVRIKRKHQVLETFLAEVLDFDRREAHKEACELE-----HAVSDSVL 112

Query: 116 NAFFDVLTQ 124
              +D L  
Sbjct: 113 ERIYDFLGN 121


>gi|89067759|ref|ZP_01155213.1| transcriptional regulator, ArsR family protein [Oceanicola
          granulosus HTCC2516]
 gi|89046729|gb|EAR52784.1| transcriptional regulator, ArsR family protein [Oceanicola
          granulosus HTCC2516]
          Length = 120

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +L   A   + P R++ IA     S   + K ++ L  AG+V 
Sbjct: 27 ILTLLA--QEGPARVTDIAGRFDTSLNAVSKHIKVLENAGLVT 67


>gi|271963299|ref|YP_003337495.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270506474|gb|ACZ84752.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 239

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +  +      ++A    IS + L + ++ L +AG +   RGR GG
Sbjct: 33 LGVVTEKLPPERELAVQLGISRVTLREAIRALQEAGYLTVRRGRYGG 79


>gi|164687044|ref|ZP_02211072.1| hypothetical protein CLOBAR_00670 [Clostridium bartlettii DSM
          16795]
 gi|164603929|gb|EDQ97394.1| hypothetical protein CLOBAR_00670 [Clostridium bartlettii DSM
          16795]
          Length = 247

 Score = 37.6 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND       +A    +S   L + L  L + G+++ +RG+ 
Sbjct: 33 KNDRLPSEPDLARDLGVSRTTLRQALTLLQEDGLIKIIRGKG 74


>gi|317153119|ref|YP_004121167.1| ribonuclease BN [Desulfovibrio aespoeensis Aspo-2]
 gi|316943370|gb|ADU62421.1| ribonuclease BN [Desulfovibrio aespoeensis Aspo-2]
          Length = 474

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 22/86 (25%)

Query: 10  GIRVLMYCAIH--NDYPN-RISQIAEACCISELFLFKILQPLVKAGI----------VET 56
            + ++   A    +  P   + +I++        +  + + L KAG           V  
Sbjct: 323 AVLMMSLLARRFRDGRPLPSVEEISDGLMAPASLVSDLFRLLQKAGYTVLTDDQDHEV-- 380

Query: 57  VRGRRGGVRLCRPADQITILDVVKAT 82
                      R  D+I +LDVV+  
Sbjct: 381 -------YAPARALDEIRVLDVVRVV 399


>gi|251798051|ref|YP_003012782.1| ArsR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545677|gb|ACT02696.1| transcriptional regulator, ArsR family [Paenibacillus sp. JDR-2]
          Length = 310

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
          ++     N+ P  I ++AE   +S   + K +Q + + G++  E++ G RG
Sbjct: 24 MIEL--LNNGPMSIKELAETLGLSSAIVTKHIQKMEEGGLIKTESLSGTRG 72


>gi|271965514|ref|YP_003339710.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270508689|gb|ACZ86967.1| helix-turn-helix, type 11 [Streptosporangium roseum DSM 43021]
          Length = 318

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL    I    P     ++A    + E  + +    L + G+ VE  RGR GG RL
Sbjct: 5  RVLALLEILQAGPGLTGPELAARLEVDERTVRRYAVKLSELGVPVEAERGRHGGYRL 61


>gi|254502459|ref|ZP_05114610.1| HTH domain family [Labrenzia alexandrii DFL-11]
 gi|222438530|gb|EEE45209.1| HTH domain family [Labrenzia alexandrii DFL-11]
          Length = 341

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             + +AE   +S   +++ +  L+  G+ ++  RG  GG RL +
Sbjct: 20 VPATVLAERFHVSLRTVYRDIDRLIALGVPIDAERGAEGGYRLAK 64


>gi|254169351|ref|ZP_04876181.1| hypothetical protein ABOONEI_2511 [Aciduliprofundum boonei T469]
 gi|289596704|ref|YP_003483400.1| AAA ATPase [Aciduliprofundum boonei T469]
 gi|197621714|gb|EDY34299.1| hypothetical protein ABOONEI_2511 [Aciduliprofundum boonei T469]
 gi|289534491|gb|ADD08838.1| AAA ATPase [Aciduliprofundum boonei T469]
          Length = 390

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           Y A+++      S +A A  IS   L K L  L K+GI+
Sbjct: 209 YIAVNSGTLLSYSNMANALGISYQTLRKYLDALRKSGII 247


>gi|15608857|ref|NP_216235.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15841179|ref|NP_336216.1| Crp family transcriptional regulator [Mycobacterium tuberculosis
          CDC1551]
 gi|31792907|ref|NP_855400.1| transcriptional regulatory protein [Mycobacterium bovis
          AF2122/97]
 gi|121637627|ref|YP_977850.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148661517|ref|YP_001283040.1| Crp family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148822925|ref|YP_001287679.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|215403977|ref|ZP_03416158.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215411367|ref|ZP_03420175.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215427040|ref|ZP_03424959.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215430612|ref|ZP_03428531.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|215445905|ref|ZP_03432657.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218753427|ref|ZP_03532223.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|224990102|ref|YP_002644789.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253799242|ref|YP_003032243.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254231914|ref|ZP_04925241.1| hypothetical protein TBCG_01673 [Mycobacterium tuberculosis C]
 gi|254364557|ref|ZP_04980603.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254550730|ref|ZP_05141177.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260186672|ref|ZP_05764146.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260204989|ref|ZP_05772480.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289447334|ref|ZP_06437078.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289554508|ref|ZP_06443718.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289574387|ref|ZP_06454614.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289745843|ref|ZP_06505221.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis 02_1987]
 gi|289753810|ref|ZP_06513188.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          EAS054]
 gi|289757828|ref|ZP_06517206.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|289761875|ref|ZP_06521253.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|294993171|ref|ZP_06798862.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297634272|ref|ZP_06952052.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297731259|ref|ZP_06960377.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298525217|ref|ZP_07012626.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306775905|ref|ZP_07414242.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306779723|ref|ZP_07418060.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306784457|ref|ZP_07422779.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306788823|ref|ZP_07427145.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306793159|ref|ZP_07431461.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306797538|ref|ZP_07435840.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306803419|ref|ZP_07440087.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306807999|ref|ZP_07444667.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306967818|ref|ZP_07480479.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306972014|ref|ZP_07484675.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307079725|ref|ZP_07488895.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307084304|ref|ZP_07493417.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313658591|ref|ZP_07815471.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|1654021|emb|CAB03703.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13881400|gb|AAK46030.1| transcriptional regulator, Crp family [Mycobacterium tuberculosis
          CDC1551]
 gi|31618498|emb|CAD94450.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121493274|emb|CAL71745.1| Probable transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124600973|gb|EAY59983.1| hypothetical protein TBCG_01673 [Mycobacterium tuberculosis C]
 gi|134150071|gb|EBA42116.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148505669|gb|ABQ73478.1| Crp family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148721452|gb|ABR06077.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224773215|dbj|BAH26021.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253320745|gb|ACT25348.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289420292|gb|EFD17493.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289439140|gb|EFD21633.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289538818|gb|EFD43396.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289686371|gb|EFD53859.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis 02_1987]
 gi|289694397|gb|EFD61826.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          EAS054]
 gi|289709381|gb|EFD73397.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|289713392|gb|EFD77404.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|298495011|gb|EFI30305.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308215655|gb|EFO75054.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308327373|gb|EFP16224.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308330816|gb|EFP19667.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308334639|gb|EFP23490.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308338426|gb|EFP27277.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308342149|gb|EFP31000.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308345621|gb|EFP34472.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308349936|gb|EFP38787.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308354557|gb|EFP43408.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308358534|gb|EFP47385.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308362474|gb|EFP51325.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308366093|gb|EFP54944.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323719810|gb|EGB28924.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326903334|gb|EGE50267.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328458994|gb|AEB04417.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 259

 Score = 37.6 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             +L     H    ++ ++I E   ++   + +IL  L   G+V + RG RG  RL   
Sbjct: 19 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVAS-RGARGPYRLGP- 75

Query: 70 ADQIT 74
            +IT
Sbjct: 76 --EIT 78


>gi|302558027|ref|ZP_07310369.1| AsnC family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302475645|gb|EFL38738.1| AsnC family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 112

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RVL+  A   D   R+  +AE   I+E  +  I+  L  AG +   R
Sbjct: 20 RVLIALAQDPDA--RLRDVAERIGITERAVQLIVADLETAGYLTRTR 64


>gi|261403034|ref|YP_003247258.1| phosphate uptake regulator, PhoU [Methanocaldococcus vulcanius
          M7]
 gi|261370027|gb|ACX72776.1| phosphate uptake regulator, PhoU [Methanocaldococcus vulcanius
          M7]
          Length = 281

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          IRV++      + P    +IAE   IS  ++ K+L+PL+  G+V+
Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDKGVVK 52


>gi|271965550|ref|YP_003339746.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270508725|gb|ACZ87003.1| DeoR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 333

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++AE   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 31 SELAERLRVSPRTIRRDIDRLRELGYPVQASMGAVGGYRLVAGAAMPP 78


>gi|312915184|dbj|BAJ39158.1| hypothetical protein STMDT12_C42150 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
          Length = 243

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|170747798|ref|YP_001754058.1| ArsR family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654320|gb|ACB23375.1| transcriptional regulator, ArsR family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 118

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +R++               +AEA  +S   +   L+ L  AG+V + R GR        P
Sbjct: 19 LRLVRALVTAGPGGLASGALAEAVGVSAATVSHHLKELSHAGLVASRREGRSIIYSAAYP 78

Query: 70 ADQITILDVVKATEESFFVAECFASHKIDC 99
          A    + D++     +F + +C       C
Sbjct: 79 A----LSDLI-----AFLMKDCCQGRPEVC 99


>gi|153853509|ref|ZP_01994889.1| hypothetical protein DORLON_00878 [Dorea longicatena DSM 13814]
 gi|149753664|gb|EDM63595.1| hypothetical protein DORLON_00878 [Dorea longicatena DSM 13814]
          Length = 326

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          ++     +D      Q+ E   +S   ++K++  L K G  +E VR +  G RL    D 
Sbjct: 5  ILRLLKESDTYISGQQLCEQFQVSRTAIWKVIDQLKKEGYEIEAVRNK--GYRLIDSPDV 62

Query: 73 ITILDV 78
          ++  ++
Sbjct: 63 MSKAEI 68


>gi|57234340|ref|YP_181632.1| hypothetical protein DET0907 [Dehalococcoides ethenogenes 195]
 gi|57224788|gb|AAW39845.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
          Length = 111

 Score = 37.6 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
          T++ + VL + A H+       +IAE   I+E  + KI+  L   G +   + GR    R
Sbjct: 8  TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLEAEGYIAKKKEGRGIKYR 64

Query: 66 LCRPAD-------QITILDVVK 80
          +            +I I D ++
Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86


>gi|257126044|ref|YP_003164158.1| hypothetical protein Lebu_1278 [Leptotrichia buccalis C-1013-b]
 gi|257049983|gb|ACV39167.1| Helix-turn-helix type 11 domain protein [Leptotrichia buccalis
          C-1013-b]
          Length = 299

 Score = 37.2 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          VL+     N       +++E   +S   +++ ++ L  AGI + ++RG+ GG+RL
Sbjct: 10 VLILL---NKKTITAKKLSEHFNVSIRTIYRDIEALSFAGIPIYSLRGKNGGIRL 61


>gi|253574745|ref|ZP_04852085.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251845791|gb|EES73799.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 366

 Score = 37.2 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +          +IAE   +S   + +    L K G +E ++G+ 
Sbjct: 25 LQPGKQVPSENEIAEQFGLSRQTVRQTFGELEKEGWLERIQGKG 68


>gi|237741097|ref|ZP_04571578.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|229430629|gb|EEO40841.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
          Length = 474

 Score = 37.2 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K++Q L + G + +++G+ 
Sbjct: 32 ENDKFYSVRQISIKYEVNLNTVLKVVQMLEEEGYLYSIKGKG 73


>gi|225872232|ref|YP_002753687.1| putative sugar uptake ABC transporter, solute-binding protein
          [Acidobacterium capsulatum ATCC 51196]
 gi|225794334|gb|ACO34424.1| putative sugar uptake ABC transporter, solute-binding protein
          [Acidobacterium capsulatum ATCC 51196]
          Length = 369

 Score = 37.2 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          ++      D P  +  I +   IS+  +++IL+  V  G +   +G  G  RL     ++
Sbjct: 21 ILELLQQEDKPMALEAIYQRTRISKTTVYRILKTFVHRGYLAQSQG--GLYRLVSRPRKV 78

Query: 74 TIL 76
             
Sbjct: 79 RFG 81


>gi|239826909|ref|YP_002949533.1| GntR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239807202|gb|ACS24267.1| transcriptional regulator, GntR family with aminotransferase
          domain [Geobacillus sp. WCH70]
          Length = 490

 Score = 37.2 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +    + Q+++   +S + + K  Q L + G VE+ +G+ 
Sbjct: 33 GEKLPSVRQLSKELGVSLVTVQKAYQQLQQKGYVESFQGKG 73


>gi|16119304|ref|NP_396010.1| GntR family transcriptional regulator [Agrobacterium tumefaciens
          str. C58]
 gi|15161814|gb|AAK90451.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens
          str. C58]
          Length = 234

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 11 IRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R +   A + D       ++A    +S   + + L+ L   G++ + RG  
Sbjct: 21 LRAIKSGAYNPDERLPTEHELAAEFEVSRPVIREALKRLRDQGLIYSRRGAG 72


>gi|72161958|ref|YP_289615.1| ArsR family transcriptional regulator [Thermobifida fusca YX]
 gi|71915690|gb|AAZ55592.1| transcriptional regulator, ArsR family [Thermobifida fusca YX]
          Length = 125

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  +  A  +S+  +   L+ L +AG++   R
Sbjct: 46 LRLLSMIASHPKGEACVCDLTAAFDLSQPTISHHLKLLRQAGLITAER 93


>gi|322370532|ref|ZP_08045090.1| transcriptional regulator, MarR family protein [Haladaptatus
           paucihalophilus DX253]
 gi|320549949|gb|EFW91605.1| transcriptional regulator, MarR family protein [Haladaptatus
           paucihalophilus DX253]
          Length = 237

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61
           R  +Y AI ++    +S ++E   I    +   ++ L + G+VE  TVRG+R
Sbjct: 93  RAKIYDAIADEPGLSLSALSERTEIPRSTVRYHVRILQEEGLVETTTVRGKR 144


>gi|288922823|ref|ZP_06416989.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
 gi|288345838|gb|EFC80201.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
          Length = 364

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                   +IA+   +S   +++ ++ L  AGI V   RG  GG RL
Sbjct: 14 QARGRLTAREIADELAVSVRTVYRDVESLAGAGIPVVAERGSTGGYRL 61


>gi|225376464|ref|ZP_03753685.1| hypothetical protein ROSEINA2194_02106 [Roseburia inulinivorans
          DSM 16841]
 gi|225211840|gb|EEG94194.1| hypothetical protein ROSEINA2194_02106 [Roseburia inulinivorans
          DSM 16841]
          Length = 305

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +      ++AE   +S   + + ++ L KAGI + T +G  GG+ L
Sbjct: 15 QEEKTTAPELAEKFEVSRRTINRDIEDLCKAGIPIRTAQGTGGGISL 61


>gi|169634571|ref|YP_001708307.1| putative transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169153363|emb|CAP02480.1| putative transcriptional regulator [Acinetobacter baumannii]
          Length = 257

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV A +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRTVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD V + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|182419261|ref|ZP_02950514.1| lactose phosphotransferase system repressor [Clostridium
          butyricum 5521]
 gi|237668033|ref|ZP_04528017.1| lactose phosphotransferase system repressor [Clostridium
          butyricum E4 str. BoNT E BL5262]
 gi|182376901|gb|EDT74472.1| lactose phosphotransferase system repressor [Clostridium
          butyricum 5521]
 gi|237656381|gb|EEP53937.1| lactose phosphotransferase system repressor [Clostridium
          butyricum E4 str. BoNT E BL5262]
          Length = 259

 Score = 37.2 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 13/74 (17%)

Query: 1  MHL-----TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M +     +KR +Y   +L Y   + D     +++AE   +S L L +  Q L   G+V 
Sbjct: 1  MKINTSIISKRREY---ILKYLKEYPD--ISTAELAEKLNVSSLTLRRDFQALENDGLV- 54

Query: 56 TVRGRRGGVRLCRP 69
           VR   GG +L   
Sbjct: 55 -VR-YYGGAKLIED 66


>gi|251797915|ref|YP_003012646.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545541|gb|ACT02560.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2]
          Length = 131

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           D    +  +A    I+   + +  Q L + GIVET RG
Sbjct: 31 GDKIESVRDLALELQINPNTIQRTFQELEREGIVETRRG 69


>gi|319649365|ref|ZP_08003523.1| hypothetical protein HMPREF1013_00127 [Bacillus sp. 2_A_57_CT2]
 gi|317398999|gb|EFV79679.1| hypothetical protein HMPREF1013_00127 [Bacillus sp. 2_A_57_CT2]
          Length = 322

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + N+      ++A+   ++E  + + ++ L  AGI V   RG+ GG +L
Sbjct: 9  ILLLLQNNERMTTRELAKELEVTERTIHRDMEALSAAGIPVLAERGKFGGWKL 61


>gi|126660710|ref|ZP_01731809.1| hypothetical protein CY0110_09420 [Cyanothece sp. CCY0110]
 gi|126618008|gb|EAZ88778.1| hypothetical protein CY0110_09420 [Cyanothece sp. CCY0110]
          Length = 327

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
             Q+A    +    + K+ Q L +AG+VE++ G  G     +  + I+ 
Sbjct: 39 STRQLATMTGLHRNTISKVYQQLEEAGLVESIAG-SGIYVKAQNNEDISF 87


>gi|146295212|ref|YP_001178983.1| regulatory protein GntR, HTH [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145408788|gb|ABP65792.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 121

 Score = 37.2 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +  + + ++A+   ++   + ++LQ L +  ++ T RG  
Sbjct: 28 QPGEKLSSVREMAQMFGVNPNTIQRVLQELERENLIFTERGIG 70


>gi|293607627|ref|ZP_06689961.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292814060|gb|EFF73207.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 285

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-------RRGGVRLCRPAD 71
              D     S+I     +S   + + L  L  +G+VET  G         G V       
Sbjct: 79  RPGDKLPTESEIMRQFGVSRTVVREALSRLQASGLVETHHGVGTYALEPSGSVDFRVDPA 138

Query: 72  QI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAFFDVLTQ 124
            I T+ DV+   E       C  S       +    +    +R+AL+ F   L  
Sbjct: 139 DIATVRDVLVLLELRI----CLESEAAGLAAIRRSEVQLQEMRRALDLFKSALES 189


>gi|290954938|ref|YP_003486120.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644464|emb|CBG67549.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 321

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG 63
          ++  A  +       ++A A  +S   + + L  L  AG+ V   RGR GG
Sbjct: 10 MLLLASRD--AVTTQELASALGVSLRTITRDLNWLRDAGLPVTAQRGRLGG 58


>gi|322437600|ref|YP_004219690.1| transcriptional regulator, AraC family [Acidobacterium sp.
           MP5ACTX9]
 gi|321165493|gb|ADW71196.1| transcriptional regulator, AraC family [Acidobacterium sp.
           MP5ACTX9]
          Length = 294

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           RVL Y A H +    + ++A    IS  +L  + + 
Sbjct: 196 RVLSYIAEHLNESITLEELARVAEISPNYLIALFRQ 231


>gi|312139804|ref|YP_004007140.1| DeoR family transcriptional regulator [Rhodococcus equi 103S]
 gi|325676744|ref|ZP_08156417.1| TonB-dependent receptor [Rhodococcus equi ATCC 33707]
 gi|311889143|emb|CBH48456.1| putative DeoR family transcritional regulator [Rhodococcus equi
          103S]
 gi|325552292|gb|EGD21981.1| TonB-dependent receptor [Rhodococcus equi ATCC 33707]
          Length = 231

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66
          +  L      +        ++A    +S   + + L  L  +G ++ +  G  GG  L
Sbjct: 7  LHALSEMLRRSGPRGCTAERLATEFGVSVRTVKRDLAALENSGALLWSRPGPGGGYGL 64


>gi|154505275|ref|ZP_02042013.1| hypothetical protein RUMGNA_02789 [Ruminococcus gnavus ATCC
          29149]
 gi|153794473|gb|EDN76893.1| hypothetical protein RUMGNA_02789 [Ruminococcus gnavus ATCC
          29149]
          Length = 326

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83
              QI E   +S   ++K+++ L + G  VE VR R  G RL    D ++  ++V   +
Sbjct: 16 VSGQQICERFQVSRTAVWKVIKQLKEEGYEVEAVRNR--GYRLSSLPDILSREEIVSQID 73


>gi|119964331|ref|YP_946286.1| IclR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119951190|gb|ABM10101.1| putative transcriptional regulator, IclR family [Arthrobacter
           aurescens TC1]
          Length = 268

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR- 61
           +  D  +++L   A   D      +IAE   I +  + +++  LV   IV   + RG+  
Sbjct: 21  QSVDRALQILEILAREGDAGVS--EIAEEMGIHKSTVSRLVGSLVNRDIVRQNSERGKYQ 78

Query: 62  ---GGVRLCRP-ADQITI----LDVVKAT 82
              G +RL      ++++     +V++A 
Sbjct: 79  LGFGILRLASSIPGRLSVVHEAREVLEAL 107


>gi|94313372|ref|YP_586581.1| GntR family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93357224|gb|ABF11312.1| transcriptional regulator, GntR family [Cupriavidus metallidurans
          CH34]
          Length = 252

 Score = 37.2 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H        ++A A  +S   + + +  L  +G VET RG  
Sbjct: 44 AHGQRLPTEHELATAFDVSRNVVREAIARLKLSGYVETRRGTG 86


>gi|319746102|gb|EFV98376.1| RepE protein [Streptococcus agalactiae ATCC 13813]
          Length = 497

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 6   RTDYGIRVLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLV-KAGIVETVR- 58
           +TD    V+ Y      ++ P       +I E   I E  L K+L+ L  +  I  TV+ 
Sbjct: 373 KTD----VMAYLEGFYQSEDPFIQTTKKEIREKLNIPERSLDKVLKVLKTEQKIFFTVKH 428

Query: 59  GRRGGVRLC 67
           GR GG+RL 
Sbjct: 429 GRGGGIRLA 437


>gi|319943764|ref|ZP_08018045.1| YihY family protein [Lautropia mirabilis ATCC 51599]
 gi|319742997|gb|EFV95403.1| YihY family protein [Lautropia mirabilis ATCC 51599]
          Length = 653

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 17/143 (11%)

Query: 10  GIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVR 65
            + ++       +  +   R  ++A         +  IL+ LV  GIV  V +       
Sbjct: 319 ALAIMQALGERYLQGNAALRTEELARRFHTPGYAIDGILEALVAHGIVVRVDKSEPAAWM 378

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
             R    IT   V++A            +  I  P   +  +      A +    VL+  
Sbjct: 379 PGRDLSNITPWQVLEAV---------RHAGDIHPPEPDADRIIQTFSYAQDQMSAVLSTI 429

Query: 126 SIECLV----RNRSSIKKIFNAG 144
           S   L+    R R  ++     G
Sbjct: 430 SFRDLLTQPPRERQPVRSNMAHG 452


>gi|306824780|ref|ZP_07458124.1| RepE protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432991|gb|EFM35963.1| RepE protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 500

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 6   RTDYGIRVLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLV-KAGIVETVR- 58
           +TD    V+ Y      ++ P       +I E   I E  L K+L+ L  +  I  TV+ 
Sbjct: 376 KTD----VMAYLEGFYQSEDPFIQTTKKEIREKLNIPERSLDKVLKVLKTEQKIFFTVKH 431

Query: 59  GRRGGVRLC 67
           GR GG+RL 
Sbjct: 432 GRGGGIRLA 440


>gi|303244145|ref|ZP_07330483.1| phosphate uptake regulator, PhoU [Methanothermococcus okinawensis
          IH1]
 gi|302485530|gb|EFL48456.1| phosphate uptake regulator, PhoU [Methanothermococcus okinawensis
          IH1]
          Length = 283

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          D P    +IA+   IS  ++ K+L+PL++ G+V
Sbjct: 19 DEPETQDEIAQKLNISRRYVAKLLKPLMEKGVV 51


>gi|298483939|ref|ZP_07002109.1| DNA-binding transcriptional activator FucR [Bacteroides sp. D22]
 gi|298269848|gb|EFI11439.1| DNA-binding transcriptional activator FucR [Bacteroides sp. D22]
          Length = 331

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|293368959|ref|ZP_06615560.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CMC
          3f]
 gi|292635979|gb|EFF54470.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CMC
          3f]
          Length = 331

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|317128404|ref|YP_004094686.1| iron (metal) dependent repressor, DtxR family [Bacillus
          cellulosilyticus DSM 2522]
 gi|315473352|gb|ADU29955.1| iron (metal) dependent repressor, DtxR family [Bacillus
          cellulosilyticus DSM 2522]
          Length = 143

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K+         G+V T +G++ G R
Sbjct: 13 IYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSQYLVYEKYRGLVLTAKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|260175265|ref|ZP_05761677.1| FucR [Bacteroides sp. D2]
 gi|315923499|ref|ZP_07919739.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697374|gb|EFS34209.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 331

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|237713655|ref|ZP_04544136.1| FucR [Bacteroides sp. D1]
 gi|262406247|ref|ZP_06082796.1| FucR [Bacteroides sp. 2_1_22]
 gi|294643739|ref|ZP_06721538.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CC
          2a]
 gi|294810109|ref|ZP_06768780.1| transcriptional regulator, GntR family [Bacteroides xylanisolvens
          SD CC 1b]
 gi|229446377|gb|EEO52168.1| FucR [Bacteroides sp. D1]
 gi|262354950|gb|EEZ04041.1| FucR [Bacteroides sp. 2_1_22]
 gi|292640923|gb|EFF59142.1| transcriptional regulator, GntR family [Bacteroides ovatus SD CC
          2a]
 gi|294442713|gb|EFG11509.1| transcriptional regulator, GntR family [Bacteroides xylanisolvens
          SD CC 1b]
          Length = 331

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|225410057|ref|ZP_03761246.1| hypothetical protein CLOSTASPAR_05278 [Clostridium asparagiforme
          DSM 15981]
 gi|225042405|gb|EEG52651.1| hypothetical protein CLOSTASPAR_05278 [Clostridium asparagiforme
          DSM 15981]
          Length = 415

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R+++   +  +     S+IA+   +S   + KIL  L + G+++++ G+ 
Sbjct: 17 RLVLSL-MRQNAVISASEIAQRINLSITTVVKILAVLQENGLIKSM-GKG 64


>gi|160885845|ref|ZP_02066848.1| hypothetical protein BACOVA_03849 [Bacteroides ovatus ATCC 8483]
 gi|237719304|ref|ZP_04549785.1| FucR [Bacteroides sp. 2_2_4]
 gi|299149295|ref|ZP_07042355.1| FucR [Bacteroides sp. 3_1_23]
 gi|156108658|gb|EDO10403.1| hypothetical protein BACOVA_03849 [Bacteroides ovatus ATCC 8483]
 gi|229451164|gb|EEO56955.1| FucR [Bacteroides sp. 2_2_4]
 gi|298512729|gb|EFI36618.1| FucR [Bacteroides sp. 3_1_23]
          Length = 331

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|134103187|ref|YP_001108848.1| IclR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291003871|ref|ZP_06561844.1| IclR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133915810|emb|CAM05923.1| IclR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 257

 Score = 37.2 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L+           +S +AE+  +    + +I++ LV AG       RR    L      I
Sbjct: 23 LLELMADAGGEVALSDLAESSGLPLPTIHRIMRTLVSAGYARQQPSRR--YALG--PRLI 78

Query: 74 TILD 77
           + +
Sbjct: 79 RLGE 82


>gi|293602192|ref|ZP_06684642.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292819397|gb|EFF78428.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 235

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPAD 71
           +  +     + +AE   +S   + + +  L + GIVE  +G         G   L   A 
Sbjct: 30  LPGEKLPTEAALAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVYVTGLTGNRALRIDAT 89

Query: 72  QIT----ILDVV---KATEESFF 87
           ++T    +L VV   +A E    
Sbjct: 90  ELTSLDAVLHVVDLRRALETEIA 112


>gi|242398127|ref|YP_002993551.1| Sugar-specific transcriptional regulator TrmB family [Thermococcus
           sibiricus MM 739]
 gi|242264520|gb|ACS89202.1| Sugar-specific transcriptional regulator TrmB family [Thermococcus
           sibiricus MM 739]
          Length = 281

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           R L+Y  +        +++  A  I +   +++ + L K G+V+ ++GR+
Sbjct: 225 RALLYI-LEKGGRASQAEVRTALEIPKTTAWRMFKRLEKQGLVKIIKGRK 273


>gi|241895081|ref|ZP_04782377.1| BglG family transcriptional antiterminator [Weissella
          paramesenteroides ATCC 33313]
 gi|241871799|gb|EER75550.1| BglG family transcriptional antiterminator [Weissella
          paramesenteroides ATCC 33313]
          Length = 464

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRL 66
          ++LM+     D+      I++   +S+  +++++  L +   +VE+ RGR  G RL
Sbjct: 9  KILMFLGQQTDF-VDAQAISQTFDVSKKTVYRMINKLNQEQKVVESQRGR--GYRL 61


>gi|271963654|ref|YP_003337850.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270506829|gb|ACZ85107.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 255

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 4  TKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +  T+   R++   A    +  +      ++A    +S   + + +  L   GIVE  RG
Sbjct: 22 SVATEVADRLMTAVAIGDYLPGERLPGERELATILDVSRATVREAIGRLQAVGIVEIKRG 81

Query: 60 RRGG 63
          R GG
Sbjct: 82 RTGG 85


>gi|77164574|ref|YP_343099.1| Crp family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433971|ref|ZP_05047479.1| cyclic nucleotide-binding domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882888|gb|ABA57569.1| transcriptional regulatory protein, Crp family [Nitrosococcus
           oceani ATCC 19707]
 gi|207090304|gb|EDZ67575.1| cyclic nucleotide-binding domain protein [Nitrosococcus oceani
           AFC27]
          Length = 214

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 12  RVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVE 55
           R L+  AI       I +      IA+    S   + +I+  L   G +E
Sbjct: 149 RTLLDLAIEKGGKLIIEERPTHQEIAQRVGASREMVSRIMGDLATGGYIE 198


>gi|261409432|ref|YP_003245673.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261285895|gb|ACX67866.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 319

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++Y  ++N+     S +AE   +S+  +++ +  +  AGI V + +G
Sbjct: 1  MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 VNGGY 59


>gi|116872127|ref|YP_848908.1| transcriptional regulator [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116741005|emb|CAK20125.1| transcriptional regulator [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 125

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +Y A   D    + ++A    ++   + +    L +AGI+ TVRG   G  L     +I
Sbjct: 25 IYAA--GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIYTVRGT--GKYLTEDKRRI 79


>gi|159898470|ref|YP_001544717.1| helix-turn-helix type 11 domain-containing protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159891509|gb|ABX04589.1| Helix-turn-helix type 11 domain protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 321

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +      S++A+   I    + + +Q L   GI VE  RG  G  RL
Sbjct: 15 LQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRL 63


>gi|111018808|ref|YP_701780.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818338|gb|ABG93622.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 268

 Score = 37.2 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 16/106 (15%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +  +     S+IA    + +  + +++  L + G VE   G RG  +L           V
Sbjct: 32  VAAEGRVGASEIAVRLGVHKSTVSRLIASLQQRGFVE-EAGVRGKYQLG--------FAV 82

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           V+  E +   +      + +C       L     + +N    VL  
Sbjct: 83  VRLAEATVAQSGLVEVAQPECD-----RLADAFGETVN--LAVLDG 121


>gi|295106687|emb|CBL04230.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 143

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N+    + +++    ++   + K+ Q L + G + T RG+ 
Sbjct: 47 ENERLPSVRELSVQLGVNYNTINKVYQDLERDGFIFTRRGKG 88


>gi|152994106|ref|YP_001338941.1| helix-turn-helix type 11 domain-containing protein [Marinomonas
          sp. MWYL1]
 gi|150835030|gb|ABR69006.1| Helix-turn-helix type 11 domain protein [Marinomonas sp. MWYL1]
          Length = 328

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++LM    H       +++A+AC  S   +++ ++ L   G+ V + +G +GG RL
Sbjct: 7  LKMLMMLQTH--EKVTAAELADACETSIRTVYRDIEALSAIGVPVYSEQGVQGGYRL 61


>gi|291618289|ref|YP_003521031.1| TtgV [Pantoea ananatis LMG 20103]
 gi|291153319|gb|ADD77903.1| TtgV [Pantoea ananatis LMG 20103]
          Length = 261

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            ++L     H      + +IA+   +    + +I+  L  A +V +     GG+RL 
Sbjct: 22 AAKILNALGEHPGG-MSLGEIAQVVDLPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76


>gi|289435253|ref|YP_003465125.1| birA bifunctional protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289171497|emb|CBH28041.1| birA bifunctional protein [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 326

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|256828707|ref|YP_003157435.1| putative PaaX family transcriptional regulator [Desulfomicrobium
          baculatum DSM 4028]
 gi|256577883|gb|ACU89019.1| putative transcriptional regulator, PaaX family [Desulfomicrobium
          baculatum DSM 4028]
          Length = 102

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRR 61
          LT  T     VL   +       R+  IA    I+E  +  I+  L  AG ++ +  GRR
Sbjct: 13 LTNHT----HVLFCLSRDPG--MRMKDIASEVGITERAVQHIVADLRAAGYLIGSREGRR 66

Query: 62 GGV------RLCRPADQ-ITILDVVKATE 83
                   RL  P +    I DV++  E
Sbjct: 67 VTYTILRDQRLRHPLESGCCIGDVLEVLE 95


>gi|210622817|ref|ZP_03293361.1| hypothetical protein CLOHIR_01309 [Clostridium hiranonis DSM
          13275]
 gi|210154034|gb|EEA85040.1| hypothetical protein CLOHIR_01309 [Clostridium hiranonis DSM
          13275]
          Length = 71

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG-VRLC- 67
           ++L Y   +   P    ++AE   +S   + + +  L  AGI + T RGR GG  R+  
Sbjct: 7  FKILYYLLKNGTTPV--KELAEIFEVSTRTIHRDIDSLGSAGIPICTSRGRHGGVYRISI 64

Query: 68 -RPADQI 73
           R A  I
Sbjct: 65 LRAAKSI 71


>gi|56695382|ref|YP_165730.1| GntR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56677119|gb|AAV93785.1| transcriptional regulator, GntR family [Ruegeria pomeroyi DSS-3]
          Length = 236

 Score = 37.2 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 11/76 (14%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
              YG           D     +Q+A    ++   + + L  L   G+V   RG   GV
Sbjct: 19 AEGRYG---------EGDRLPTEAQLAATHGVNRHTVRRALADLADQGLVHARRGA--GV 67

Query: 65 RLCRPADQITILDVVK 80
           +        I   V+
Sbjct: 68 FVAARPTDYAIGKRVR 83


>gi|288574050|ref|ZP_06392407.1| biotin/acetyl-CoA-carboxylase ligase [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288569791|gb|EFC91348.1| biotin/acetyl-CoA-carboxylase ligase [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 327

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          ++L               I ++  +S   ++K +  L + G  VE+V  +  G R+    
Sbjct: 7  KILTMLKKRQGDFVSGQSICDSLGVSRTAVWKHVNQLKEDGYQVESVPRK--GYRIISSP 64

Query: 71 DQITILDVVKATEESF 86
          D +T  ++V   +  F
Sbjct: 65 DVLTSEEIVPLLDTDF 80


>gi|82702807|ref|YP_412373.1| ArsR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82410872|gb|ABB74981.1| transcriptional regulator, ArsR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 113

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
           L+      + P+ + ++ +   I +  L + L  L + G+V T R G+     L  P   
Sbjct: 33  LLILCQLINGPSSVGELEKDLGIRQPTLSQQLTVLREEGLVATERKGKYIIYSLANP--- 89

Query: 73  ITILDVVKATEESFFVAECFASHKID 98
               DVV+  E + +   C       
Sbjct: 90  ----DVVRIME-TLYSIYCGGGGNTP 110


>gi|24371812|ref|NP_715854.1| biotin--protein ligase [Shewanella oneidensis MR-1]
 gi|24345617|gb|AAN53299.1|AE015471_4 birA bifunctional protein [Shewanella oneidensis MR-1]
          Length = 319

 Score = 37.2 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
          + N++     ++A    IS   + K +  L   G+ + +V+GR  G +L  P   I+++D
Sbjct: 15 LSNEHFVSGEELATQLGISRAAVSKHVDTLEDYGVAIFSVKGR--GYKLANP---ISLID 69

Query: 78 ---VVKATEESFFVAECFASHKID 98
             +++A +       CF   +I 
Sbjct: 70 SSRLIQAID-----NRCFYFDEIP 88


>gi|332361422|gb|EGJ39226.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1056]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|332360358|gb|EGJ38170.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK49]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|327473976|gb|EGF19389.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK408]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|327469509|gb|EGF14978.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK330]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|327461337|gb|EGF07668.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1]
 gi|327489197|gb|EGF20990.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1058]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|327459779|gb|EGF06119.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1057]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|331693989|ref|YP_004330228.1| GntR domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326948678|gb|AEA22375.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 249

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          +R ++        D      ++ E   +S   L + L+ L    ++ + RG  GG  +  
Sbjct: 18 LRSMIVTGELRPGDRLPPEGELTERMAVSRSTLREALRVLSTQKLLTSSRGVGGGTFVAE 77

Query: 69 PADQ 72
          P+  
Sbjct: 78 PSTD 81


>gi|325694342|gb|EGD36255.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK150]
          Length = 311

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|255038357|ref|YP_003088978.1| transcriptional regulator, GntR family [Dyadobacter fermentans
          DSM 18053]
 gi|254951113|gb|ACT95813.1| transcriptional regulator, GntR family [Dyadobacter fermentans
          DSM 18053]
          Length = 339

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            D    I+Q++E   +S   + K  + L+K G++ +VRG+  G  + R
Sbjct: 34 RGDKIPSINQLSEEYLLSRDTVEKAYKHLIKDGVLISVRGK--GYFINR 80


>gi|226362409|ref|YP_002780187.1| arsenic resistance operon repressor ArsR [Rhodococcus opacus B4]
 gi|226240894|dbj|BAH51242.1| putative arsenic resistance operon repressor ArsR [Rhodococcus
          opacus B4]
          Length = 128

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+ +  +S+  +   L+ L  AG+++  R
Sbjct: 42 LRLLSLIASHAGGEACVCDISASFDLSQPTISHHLKVLRAAGLLDCER 89


>gi|213854844|ref|ZP_03383084.1| GntR family regulatory protein [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 203

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|170751887|ref|YP_001758147.1| CRP/FNR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658409|gb|ACB27464.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 257

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 11  IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +R L+           P     +A    +   +L +IL+ L + G+V   RGR       
Sbjct: 155 LRWLLSLQDRTGGDTLPITHELLASMLGVQRTYLTRILRVLQEQGLVRVGRGR------- 207

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCP 100
                ITILD  +A   S    EC A  +I C 
Sbjct: 208 -----ITILD-RRAV--SNAACECHARVRIQCE 232


>gi|315648280|ref|ZP_07901381.1| GntR domain protein [Paenibacillus vortex V453]
 gi|315276926|gb|EFU40269.1| GntR domain protein [Paenibacillus vortex V453]
          Length = 232

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           D      ++A++  IS   L +  + L + G++E   G  GG  L +  D
Sbjct: 31 GDVLPTERELAQSFGISRGTLREAFRILEREGLIEARPG--GGRFLSKALD 79


>gi|289643020|ref|ZP_06475152.1| GntR domain protein [Frankia symbiont of Datisca glomerata]
 gi|289507151|gb|EFD28118.1| GntR domain protein [Frankia symbiont of Datisca glomerata]
          Length = 258

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 32 EACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
          E   IS   + + L+ L   G+V    G  GG+ +     Q+ + 
Sbjct: 45 ERFGISPTVMNETLRILRNRGLVGVRPGAGGGIFVASLPPQVRLG 89


>gi|218290689|ref|ZP_03494780.1| transcriptional regulator, IclR family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239354|gb|EED06552.1| transcriptional regulator, IclR family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 257

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65
            RVL   + H    + +++IAE   +++    ++L+ L +   V    ++ R   G   
Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70

Query: 66 L---CRPADQITILDVV 79
          +    R AD   + DV 
Sbjct: 71 IPLGARAAD---LNDVY 84


>gi|254831624|ref|ZP_05236279.1| hypothetical protein Lmon1_09733 [Listeria monocytogenes 10403S]
          Length = 236

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56
           L+   ++G+R+       ++    + +      +A+    S+ +  K+L  L + GI+E+
Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207

Query: 57  VR 58
            +
Sbjct: 208 QK 209


>gi|16804171|ref|NP_465656.1| hypothetical protein lmo2132 [Listeria monocytogenes EGD-e]
 gi|224501069|ref|ZP_03669376.1| hypothetical protein LmonFR_00870 [Listeria monocytogenes FSL
           R2-561]
 gi|255029700|ref|ZP_05301651.1| hypothetical protein LmonL_12650 [Listeria monocytogenes LO28]
 gi|16411602|emb|CAD00210.1| lmo2132 [Listeria monocytogenes EGD-e]
          Length = 243

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56
           L+   ++G+R+       ++    + +      +A+    S+ +  K+L  L + GI+E+
Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207

Query: 57  VR 58
            +
Sbjct: 208 QK 209


>gi|47095706|ref|ZP_00233312.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224500202|ref|ZP_03668551.1| hypothetical protein LmonF1_11174 [Listeria monocytogenes Finland
           1988]
 gi|254826977|ref|ZP_05231664.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254899167|ref|ZP_05259091.1| hypothetical protein LmonJ_05124 [Listeria monocytogenes J0161]
 gi|254912692|ref|ZP_05262704.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937019|ref|ZP_05268716.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255025466|ref|ZP_05297452.1| hypothetical protein LmonocytFSL_02414 [Listeria monocytogenes FSL
           J2-003]
 gi|284802579|ref|YP_003414444.1| hypothetical protein LM5578_2335 [Listeria monocytogenes 08-5578]
 gi|284995721|ref|YP_003417489.1| hypothetical protein LM5923_2286 [Listeria monocytogenes 08-5923]
 gi|47015849|gb|EAL06776.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599359|gb|EEW12684.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609622|gb|EEW22230.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284058141|gb|ADB69082.1| hypothetical protein LM5578_2335 [Listeria monocytogenes 08-5578]
 gi|284061188|gb|ADB72127.1| hypothetical protein LM5923_2286 [Listeria monocytogenes 08-5923]
 gi|293590687|gb|EFF99021.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 236

 Score = 37.2 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 13/62 (20%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56
           L+   ++G+R+       ++    + +      +A+    S+ +  K+L  L + GI+E+
Sbjct: 155 LSTLIEFGLRI-------SEKVVELPEFLTYQILADHANTSKSYTSKVLGHLREDGILES 207

Query: 57  VR 58
            +
Sbjct: 208 QK 209


>gi|328866276|gb|EGG14661.1| transcription factor IIE [Dictyostelium fasciculatum]
          Length = 479

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +++   +      +  +IA    I   +  KIL  L    I+++ 
Sbjct: 58  IVIDAVLRQKKRVKEDEIANQINIPFKYCRKILMDLRGDSILKSQ 102


>gi|315644546|ref|ZP_07897678.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
 gi|315280053|gb|EFU43350.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
          Length = 310

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +D  +R+L       D P  + Q+AEA  I++  +   +Q L +A ++ + +G  
Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQADLIVSSQGAN 76


>gi|313637212|gb|EFS02728.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria seeligeri FSL
          S4-171]
          Length = 326

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|296534502|ref|ZP_06896924.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957]
 gi|296265172|gb|EFH11375.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957]
          Length = 105

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +  +    +  +AE   +S+  L + L  L + G+V T R
Sbjct: 32 RLVLLCHLIREGEITVGGLAERLGLSQPALSQHLGKLREDGLVATRR 78


>gi|255318212|ref|ZP_05359451.1| transcriptional regulator [Acinetobacter radioresistens SK82]
 gi|262379581|ref|ZP_06072737.1| GntR-family transcriptional regulator [Acinetobacter
          radioresistens SH164]
 gi|255304758|gb|EET83936.1| transcriptional regulator [Acinetobacter radioresistens SK82]
 gi|262299038|gb|EEY86951.1| GntR-family transcriptional regulator [Acinetobacter
          radioresistens SH164]
          Length = 239

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +A    +S + + + L  L   G+++T RGR GG
Sbjct: 43 ADLARLMGVSPITVREALNTLRVKGLIDTRRGRNGG 78


>gi|163736260|ref|ZP_02143679.1| regulatory protein GntR, HTH [Phaeobacter gallaeciensis BS107]
 gi|161390130|gb|EDQ14480.1| regulatory protein GntR, HTH [Phaeobacter gallaeciensis BS107]
          Length = 243

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           ++     +++AE   +S   + + L+ L    ++ T RG  GG  + R       A QIT
Sbjct: 31  DERLPSEAEMAEQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLNFEEAYAQQIT 90

Query: 75  ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119
              ++ +     F   C A + ++  C PL  +      L       F
Sbjct: 91  TSTLLLSMNAVSFDTACEARYALERACAPLAATRRTADHLATMRAEIF 138


>gi|115534808|ref|YP_783890.1| putative RepS protein [Enterococcus faecalis]
 gi|312904984|ref|ZP_07764120.1| primase 1 [Enterococcus faecalis TX0635]
 gi|12956991|emb|CAC29162.1| putative RepS protein [Enterococcus faecalis]
 gi|310631699|gb|EFQ14982.1| primase 1 [Enterococcus faecalis TX0635]
 gi|315574648|gb|EFU86839.1| primase 1 [Enterococcus faecalis TX0309B]
 gi|315582964|gb|EFU95155.1| primase 1 [Enterococcus faecalis TX0309A]
          Length = 496

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|63021984|ref|YP_232752.1| RepS [Streptococcus pyogenes]
 gi|63021998|ref|YP_232769.1| RepS [Streptococcus pyogenes]
 gi|132371|sp|P14752|REPS_STRPY RecName: Full=Protein repS
 gi|47424|emb|CAA34721.1| unnamed protein product [Streptococcus pyogenes]
 gi|456363|emb|CAA45928.1| repS [Streptococcus pyogenes]
 gi|496501|emb|CAA47078.1| RepS [Streptococcus pyogenes]
 gi|38707183|gb|AAR27193.1| RepS [Streptococcus pyogenes]
 gi|38707197|gb|AAR27207.1| RepS [Streptococcus pyogenes]
 gi|739948|prf||2004266A repS protein
          Length = 496

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|83942473|ref|ZP_00954934.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
           EE-36]
 gi|83846566|gb|EAP84442.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
           EE-36]
          Length = 247

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74
           ++     ++++    +S   + + L+ L    ++ T RG  GG  + R         QIT
Sbjct: 31  DERLPSEAELSAQFNVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQTQQIT 90

Query: 75  ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118
              ++ +  +  F   C   FA  +   PL  +      L    NA 
Sbjct: 91  TSTLLLSMNDVSFETACEARFALERACAPLSAARRQDHHLDAMQNAL 137


>gi|331267266|ref|YP_004326896.1| Zn(2+)-responsive AdcR transcriptional repressor, MarR family
          [Streptococcus oralis Uo5]
 gi|326683938|emb|CBZ01556.1| Zn(2+)-responsive AdcR transcriptional repressor, MarR family
          [Streptococcus oralis Uo5]
          Length = 146

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|297157315|gb|ADI07027.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 330

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +++    H   P     +AE   +S   + + ++ L  AG+ V T RG  GG+ L
Sbjct: 7  LSIMLLLQTHGQLP--AGALAERMEVSVRTIMRDVEALSAAGVPVYTTRGPHGGIAL 61


>gi|240172183|ref|ZP_04750842.1| hypothetical protein MkanA1_22909 [Mycobacterium kansasii ATCC
           12478]
          Length = 107

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLC--- 67
              +   + +  P    ++A    I+E  +  IL  L + G ++++  GRR    L    
Sbjct: 28  HAHVLLCVSSGEPLTARELALRIGITERSVQAILTDLTEEGYLIKSKVGRRNVYELNPQG 87

Query: 68  --RPADQI--TILDVVKAT 82
             R   +   T+ ++V A 
Sbjct: 88  RLRHPLEASHTVGELVTAL 106


>gi|53723809|ref|YP_103334.1| IclR family transcriptional regulator [Burkholderia mallei ATCC
          23344]
 gi|67643006|ref|ZP_00441756.1| transcriptional regulator, IclR family [Burkholderia mallei GB8
          horse 4]
 gi|121600089|ref|YP_993535.1| IclR family transcriptional regulator [Burkholderia mallei SAVP1]
 gi|124384049|ref|YP_001029038.1| IclR family transcriptional regulator [Burkholderia mallei NCTC
          10229]
 gi|126448519|ref|YP_001081042.1| IclR family transcriptional regulator [Burkholderia mallei NCTC
          10247]
 gi|167000642|ref|ZP_02266453.1| transcriptional regulator, IclR family [Burkholderia mallei
          PRL-20]
 gi|254177538|ref|ZP_04884193.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC
          10399]
 gi|254200292|ref|ZP_04906658.1| transcriptional regulator, IclR family [Burkholderia mallei FMH]
 gi|254209368|ref|ZP_04915714.1| transcriptional regulator, IclR family [Burkholderia mallei JHU]
 gi|254357961|ref|ZP_04974234.1| transcriptional regulator, IclR family [Burkholderia mallei
          2002721280]
 gi|52427232|gb|AAU47825.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC
          23344]
 gi|121228899|gb|ABM51417.1| transcriptional regulator, IclR family [Burkholderia mallei
          SAVP1]
 gi|124292069|gb|ABN01338.1| transcriptional regulator, IclR family [Burkholderia mallei NCTC
          10229]
 gi|126241389|gb|ABO04482.1| transcriptional regulator, IclR family [Burkholderia mallei NCTC
          10247]
 gi|147749888|gb|EDK56962.1| transcriptional regulator, IclR family [Burkholderia mallei FMH]
 gi|147750141|gb|EDK57212.1| transcriptional regulator, IclR family [Burkholderia mallei JHU]
 gi|148027088|gb|EDK85109.1| transcriptional regulator, IclR family [Burkholderia mallei
          2002721280]
 gi|160698577|gb|EDP88547.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC
          10399]
 gi|238524243|gb|EEP87677.1| transcriptional regulator, IclR family [Burkholderia mallei GB8
          horse 4]
 gi|243063451|gb|EES45637.1| transcriptional regulator, IclR family [Burkholderia mallei
          PRL-20]
          Length = 270

 Score = 37.2 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSAPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|332284862|ref|YP_004416773.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428815|gb|AEC20149.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 252

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            IA+   +S   L + +  L   G+V + +GR 
Sbjct: 45 QAIADRLGVSRTVLREAVSRLKANGLVTSKQGRG 78


>gi|329922569|ref|ZP_08278144.1| HTH domain protein [Paenibacillus sp. HGF5]
 gi|328942113|gb|EGG38395.1| HTH domain protein [Paenibacillus sp. HGF5]
          Length = 319

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++Y  ++N+     S +AE   +S+  +++ +  +  AGI V + +G
Sbjct: 1  MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 VNGGY 59


>gi|325001511|ref|ZP_08122623.1| IclR family protein transcriptional regulator [Pseudonocardia sp.
          P1]
          Length = 215

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          ++ P  +S+++    + +  + +++  L   G+VE      GG RL      I +L++ +
Sbjct: 31 DEGPVGVSELSRRLGVGKSAVHRLVTTLAAEGLVEQDP-HTGGYRLG-----IVVLELGR 84

Query: 81 AT 82
          A 
Sbjct: 85 AV 86


>gi|290959687|ref|YP_003490869.1| transcriptional repressor [Streptomyces scabiei 87.22]
 gi|260649213|emb|CBG72327.1| putative transcriptional repressor [Streptomyces scabiei 87.22]
          Length = 324

 Score = 37.2 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++A+   +S   + + +  L + G  V+   G  GG RL      P 
Sbjct: 26 ELADRLRVSRRTVRRDIDRLRELGYPVQATMGADGGYRLVAGKAMPP 72


>gi|318040143|ref|ZP_07972099.1| transcriptional regulator [Synechococcus sp. CB0101]
          Length = 136

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 20/125 (16%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA--DQITILDVVKAT 82
            RI Q+A+A  +S     K ++     G++      +GG RL  PA   +++++  ++A 
Sbjct: 6   LRIGQVAQATGLS----VKTVRFYSDEGLIHASSRSQGGYRLFDPAVVAELSLIRALRAM 61

Query: 83  EESFF----VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
           +        + +   S   +C       L S ++  + +  + LT      LV  ++ + 
Sbjct: 62  DVPLPELKRILDVRRSGHCNCS-----ALKSSIQTRIQSIDERLT-----ELVSMKAELA 111

Query: 139 KIFNA 143
           ++ ++
Sbjct: 112 QLLSS 116


>gi|295396470|ref|ZP_06806631.1| GntR-family transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
 gi|294970662|gb|EFG46576.1| GntR-family transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
          Length = 229

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          I  +       +A    +S   L  +L  L   GI+E  RGR GG R+       
Sbjct: 29 IRGEKLPAERDLAIELGVSRSTLRDVLGELQTTGILEISRGRYGGARVVGLPSDY 83


>gi|302535176|ref|ZP_07287518.1| ArsR family transcriptional regulator [Streptomyces sp. C]
 gi|302444071|gb|EFL15887.1| ArsR family transcriptional regulator [Streptomyces sp. C]
          Length = 374

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +M C      P   S++A    IS   + + L  L KAG++ T R
Sbjct: 303 MMLCRSLARAPYTTSELARVYGISAPEVSRHLAVLKKAGLMHTRR 347


>gi|315499140|ref|YP_004087944.1| transcriptional regulator, iclr family [Asticcacaulis excentricus
           CB 48]
 gi|315417152|gb|ADU13793.1| transcriptional regulator, IclR family [Asticcacaulis excentricus
           CB 48]
          Length = 129

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI--VETVRGRRGGVRLCR 68
           +R LM           +S+IAE   ++    +++   LV+ G   V    G  GG RL  
Sbjct: 58  VRGLMIVEAVASGRGSLSEIAETAGLARSTAYRLASTLVEQGYLSVAPRDGSGGGYRLG- 116

Query: 69  PADQITILD 77
               I +  
Sbjct: 117 -PKFIRLSQ 124


>gi|229111678|ref|ZP_04241226.1| Transcriptional regulator mntR [Bacillus cereus Rock1-15]
 gi|229129482|ref|ZP_04258453.1| Transcriptional regulator mntR [Bacillus cereus BDRD-Cer4]
 gi|229146777|ref|ZP_04275142.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST24]
 gi|228636605|gb|EEK93070.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST24]
 gi|228654087|gb|EEL09954.1| Transcriptional regulator mntR [Bacillus cereus BDRD-Cer4]
 gi|228671672|gb|EEL26968.1| Transcriptional regulator mntR [Bacillus cereus Rock1-15]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|213418665|ref|ZP_03351731.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
          Length = 247

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|212538957|ref|XP_002149634.1| O-methyltransferase family protein [Penicillium marneffei ATCC
           18224]
 gi|210069376|gb|EEA23467.1| O-methyltransferase family protein [Penicillium marneffei ATCC
           18224]
          Length = 464

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           D    +  IAE   + E  L K+++ +  AG + +     G
Sbjct: 102 DGVVPVRDIAELADVPETILSKVVRMMATAGFL-SQPQPGG 141


>gi|194289424|ref|YP_002005331.1| GntR family transcriptional regulator [Cupriavidus taiwanensis
          LMG 19424]
 gi|193223259|emb|CAQ69264.1| putative transcriptional regulator, GntR family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 248

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------G--GVRLCRPAD 71
                  Q+AE   +S   + ++ + L   G VE+ +G         G  G +L R  +
Sbjct: 28 GSRLPTGRQLAEQYGVSAAVIREVTEHLRSQGFVESRQGVGCTVRSRTGASGFQLPREPE 87


>gi|90416011|ref|ZP_01223944.1| putative AraC family transcriptional regulator [marine gamma
           proteobacterium HTCC2207]
 gi|90332385|gb|EAS47582.1| putative AraC family transcriptional regulator [marine gamma
           proteobacterium HTCC2207]
          Length = 326

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45
           R L+    +   P    +IA+   IS+  L ++ 
Sbjct: 230 RALLLLEQNLSRPLSTDEIADRLNISKRQLERLF 263


>gi|295840569|ref|ZP_06827502.1| GntR family transcriptional regulator [Streptomyces sp. SPB74]
 gi|295828059|gb|EFG65799.1| GntR family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 140

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++    +R L + A   D     +Q+     I+   +FK  + L + G+V++ +G  
Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73


>gi|266622318|ref|ZP_06115253.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
 gi|288865962|gb|EFC98260.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
          Length = 239

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            D      Q+ E   +S + + + +  LV  G +++ RG  
Sbjct: 30 KGDSFLTERQLQEKYDVSRVTVRQAVSELVNEGYLQSSRGVG 71


>gi|225855400|ref|YP_002736912.1| phage replication protein [Streptococcus pneumoniae JJA]
 gi|225722639|gb|ACO18492.1| phage replication protein [Streptococcus pneumoniae JJA]
          Length = 92

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-----RGRR 61
          ++  +   ++     +IA    IS   + +  + + KAG + TV     RGR 
Sbjct: 1  MVVLSNKENWLVYPEEIARRLNISREMVLRHFKKIEKAGYLRTVKKSLGRGRG 53


>gi|29832562|ref|NP_827196.1| DeoR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29609682|dbj|BAC73731.1| putative DeoR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 323

 Score = 37.2 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPTMTGAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61


>gi|325168491|ref|YP_004280281.1| transcriptional regulator protein, arsR family [Agrobacterium sp.
          H13-3]
 gi|325064214|gb|ADY67903.1| transcriptional regulator protein, arsR family [Agrobacterium sp.
          H13-3]
          Length = 114

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +I ++    + ++AE    S+  + + L  L   G+V T R
Sbjct: 28 LSIISEKEISVGELAERLNRSQSAVSQHLARLRADGLVTTRR 69


>gi|254473869|ref|ZP_05087263.1| GntR family regulatory protein [Pseudovibrio sp. JE062]
 gi|211956979|gb|EEA92185.1| GntR family regulatory protein [Pseudovibrio sp. JE062]
          Length = 230

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + E   +S   +   ++ L K G ++TVRG  
Sbjct: 36 LCERYGVSRPVVRGAMERLRKEGYIKTVRGSG 67


>gi|158520355|ref|YP_001528225.1| hypothetical protein Dole_0338 [Desulfococcus oleovorans Hxd3]
 gi|158509181|gb|ABW66148.1| hypothetical protein Dole_0338 [Desulfococcus oleovorans Hxd3]
          Length = 136

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           IRVL Y    N+ P     +      S   +  + + L K GIVE V G  G
Sbjct: 16 AIRVLTYL---NNKPPTAEDVEGLLGTSSEEVLLVCRKLEKKGIVEAVEGAYG 65


>gi|111018032|ref|YP_701004.1| MarR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817562|gb|ABG92846.1| probable transcriptional regulator, MarR family protein
           [Rhodococcus jostii RHA1]
          Length = 169

 Score = 37.2 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
           VL   +   +   ++S +A+    S   L  ++  + KAG V  E++RG RG
Sbjct: 56  VLASLSGETNRRLQLSLLAQRANASLSRLSHVITKMEKAGWVRRESIRGSRG 107


>gi|311898963|dbj|BAJ31371.1| putative GntR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 255

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRG 59
          +AE   +S   + + L  L   G+V + RG
Sbjct: 41 LAEQYGVSRGTVRQALAMLRADGLVTSRRG 70


>gi|299132438|ref|ZP_07025633.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
 gi|298592575|gb|EFI52775.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
          Length = 222

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPADQITILDVVKAT 82
           + +++    +S     + LQ L +A +V+T  RG+    RL   A+ I   ++V+A 
Sbjct: 39 SVEELSARSNLSFANTSRHLQILRRARLVDTERRGKNVFYRLAGDAEVI---ELVRAL 93


>gi|296119710|ref|ZP_06838267.1| putative transcriptional regulator [Corynebacterium ammoniagenes
          DSM 20306]
 gi|295967301|gb|EFG80569.1| putative transcriptional regulator [Corynebacterium ammoniagenes
          DSM 20306]
          Length = 118

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   +     P  + ++ E   +S+  +   L+ L +AG+++ VR
Sbjct: 47 LRLLSQLSAEGCGPVSVGELTETSGLSQPTVSHHLKRLTEAGLLDKVR 94


>gi|251771585|gb|EES52161.1| regulatory protein, ArsR [Leptospirillum ferrodiazotrophum]
          Length = 129

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRR 61
           L+      +R+      +        +I+    +S   L   L+ +  AG+VE T  GR 
Sbjct: 35  LSSGVR--LRIFRLLVSYEPEGLVAGEISSILEVSPTNLSFHLKAMAHAGLVEGTSMGRF 92

Query: 62  GGVRLCRPADQITILDVVKATEESFF-VAE--CFASHKIDCPLVGSCG 106
              R  R          ++  EE    + E  C A    +CP    CG
Sbjct: 93  VRYR-AR----------IRTMEEVIDYLTENCCQARGDNNCPPSSPCG 129


>gi|256372755|ref|YP_003110579.1| GntR family transcriptional regulator [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256009339|gb|ACU54906.1| regulatory protein GntR HTH [Acidimicrobium ferrooxidans DSM 10331]
          Length = 245

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           +A    IS   L   L  L   G + T RGR+GG  +    + +    + +
Sbjct: 51  LARMLGISLTTLRAALGILRLRGTITTRRGRQGGSVVTADPEAVRAAAIAR 101


>gi|258510181|ref|YP_003183615.1| transcriptional regulator, IclR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476907|gb|ACV57226.1| transcriptional regulator, IclR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 257

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65
            RVL   + H    + +++IAE   +++    ++L+ L +   V    ++ R   G   
Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70

Query: 66 L---CRPADQITILDVV 79
          +    R AD   + DV 
Sbjct: 71 IPLGARAAD---LNDVY 84


>gi|320161008|ref|YP_004174232.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
 gi|319994861|dbj|BAJ63632.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
          Length = 194

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +R+L   A  +     + QI+ +  +S   +   L  L +AG+V   
Sbjct: 29 LRILGVLANQS---MSVEQISTSLNLSPSTVSHHLAKLSEAGLVTAK 72


>gi|313632657|gb|EFR99636.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria seeligeri FSL
          N1-067]
          Length = 326

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|306828671|ref|ZP_07461864.1| adc operon repressor AdcR [Streptococcus mitis ATCC 6249]
 gi|304429177|gb|EFM32264.1| adc operon repressor AdcR [Streptococcus mitis ATCC 6249]
          Length = 146

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|302550418|ref|ZP_07302760.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302468036|gb|EFL31129.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 346

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +AE   +S   L + +  L   G  V    G  GG +L   A+
Sbjct: 26 LAERLGVSARTLRRDVDRLRALGYPVNASPGTGGGYQLGAGAE 68


>gi|284929478|ref|YP_003422000.1| GntR family transcriptional repressor [cyanobacterium UCYN-A]
 gi|284809922|gb|ADB95619.1| transcriptional regulator, GntR family [cyanobacterium UCYN-A]
          Length = 318

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  +    I Q+A+   +    + KI Q L + G+VE++ G  
Sbjct: 32 LPGERLPSIRQLAKTTGLHRNTINKIYQQLEEIGLVESIVGSG 74


>gi|85859314|ref|YP_461516.1| ribonuclease BN family membrane protein [Syntrophus aciditrophicus
           SB]
 gi|85722405|gb|ABC77348.1| membrane spanning protein ribonuclease BN-like family [Syntrophus
           aciditrophicus SB]
          Length = 454

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
                P    +I+    I   F+ ++L  L K+ ++        G R  +PA  I  L +
Sbjct: 346 AAGGKPLTAREISHRLEIPIRFVNELLFELAKSNVLSVTEAEGDGERGFQPAVDINALTI 405

Query: 79  VKATE 83
               E
Sbjct: 406 HYVLE 410


>gi|77454725|ref|YP_345593.1| putative arsenical resistance operon repressor [Rhodococcus
          erythropolis PR4]
 gi|229493331|ref|ZP_04387122.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|77019725|dbj|BAE46101.1| putative arsenic resistance operon repressor ArsR [Rhodococcus
          erythropolis PR4]
 gi|229319833|gb|EEN85663.1| ArsR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 122

 Score = 37.2 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I++   +S+  +   L+ L +AG+++  R
Sbjct: 37 LRLLSLVASHEGGEACVCDISDTFDLSQPTISHHLKVLRQAGLLDCER 84


>gi|313618191|gb|EFR90273.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria innocua FSL
          S4-378]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|16803943|ref|NP_465428.1| hypothetical protein lmo1904 [Listeria monocytogenes EGD-e]
 gi|47096487|ref|ZP_00234079.1| BirA bifunctional protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|224501297|ref|ZP_03669604.1| hypothetical protein LmonFR_02030 [Listeria monocytogenes FSL
          R2-561]
 gi|254831495|ref|ZP_05236150.1| hypothetical protein Lmon1_09078 [Listeria monocytogenes 10403S]
 gi|254899399|ref|ZP_05259323.1| hypothetical protein LmonJ_06284 [Listeria monocytogenes J0161]
 gi|254912462|ref|ZP_05262474.1| BirA [Listeria monocytogenes J2818]
 gi|254936789|ref|ZP_05268486.1| birA [Listeria monocytogenes F6900]
 gi|255029020|ref|ZP_05300971.1| hypothetical protein LmonL_07411 [Listeria monocytogenes LO28]
 gi|284802349|ref|YP_003414214.1| hypothetical protein LM5578_2105 [Listeria monocytogenes 08-5578]
 gi|284995491|ref|YP_003417259.1| hypothetical protein LM5923_2056 [Listeria monocytogenes 08-5923]
 gi|16411357|emb|CAC99982.1| birA [Listeria monocytogenes EGD-e]
 gi|47015140|gb|EAL06081.1| BirA bifunctional protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|258609384|gb|EEW21992.1| birA [Listeria monocytogenes F6900]
 gi|284057911|gb|ADB68852.1| hypothetical protein LM5578_2105 [Listeria monocytogenes 08-5578]
 gi|284060958|gb|ADB71897.1| hypothetical protein LM5923_2056 [Listeria monocytogenes 08-5923]
 gi|293590444|gb|EFF98778.1| BirA [Listeria monocytogenes J2818]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|284030004|ref|YP_003379935.1| MarR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809297|gb|ADB31136.1| transcriptional regulator, MarR family [Kribbella flavida DSM
           17836]
          Length = 175

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L + A     P R S +A+        + KIL+ L  AG +E  RG 
Sbjct: 59  ALRHLAA--GQPMRPSDLAQVMGTGPSNISKILKRLEAAGFIE--RGP 102


>gi|228910038|ref|ZP_04073858.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 200]
 gi|228922957|ref|ZP_04086251.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228836728|gb|EEM82075.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228849555|gb|EEM94389.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 200]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|229135027|ref|ZP_04263832.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST196]
 gi|228648412|gb|EEL04442.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST196]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|229152404|ref|ZP_04280596.1| Transcriptional regulator mntR [Bacillus cereus m1550]
 gi|228631012|gb|EEK87649.1| Transcriptional regulator mntR [Bacillus cereus m1550]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|255027109|ref|ZP_05299095.1| hypothetical protein LmonocytFSL_13668 [Listeria monocytogenes
          FSL J2-003]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|254827211|ref|ZP_05231898.1| birA [Listeria monocytogenes FSL N3-165]
 gi|258599594|gb|EEW12919.1| birA [Listeria monocytogenes FSL N3-165]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|328956642|ref|YP_004374028.1| transcriptional regulatory protein [Carnobacterium sp. 17-4]
 gi|328672966|gb|AEB29012.1| transcriptional regulatory protein [Carnobacterium sp. 17-4]
          Length = 300

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 9/56 (16%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCRPADQITILDV 78
            I +IA A  +S   + K ++ L  +G+++T R  G+ G       + +I+IL V
Sbjct: 33 MNIKEIAGAIGLSSAVITKHIKKLEASGLIKTERIPGKSG-------SQKISILKV 81


>gi|311109148|ref|YP_003982001.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763837|gb|ADP19286.1| bacterial regulatory protein, GntR family protein 68 [Achromobacter
           xylosoxidans A8]
          Length = 235

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPADQI 73
            +     S +AE   +S   + + +  L + GIVE  +G         G   L   A  +
Sbjct: 32  GEKLPTESALAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVYVTGHAGNRALRIDAADL 91

Query: 74  T----ILDVV---KATEESFF 87
           +    +L +V   +A E    
Sbjct: 92  SSLDAVLHIVDLRRALETEIA 112


>gi|289642795|ref|ZP_06474932.1| Helix-turn-helix type 11 domain protein [Frankia symbiont of
          Datisca glomerata]
 gi|289507364|gb|EFD28326.1| Helix-turn-helix type 11 domain protein [Frankia symbiont of
          Datisca glomerata]
          Length = 386

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                +IA+   +S   +++ L  L +AG+ V   RG  GG +L
Sbjct: 17 GRLTAREIADELEVSVRTVYRDLDSLAEAGVPVVAERGATGGYQL 61


>gi|270291886|ref|ZP_06198101.1| adc operon repressor AdcR [Streptococcus sp. M143]
 gi|270279414|gb|EFA25256.1| adc operon repressor AdcR [Streptococcus sp. M143]
          Length = 146

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|228941364|ref|ZP_04103916.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228974296|ref|ZP_04134865.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|229013422|ref|ZP_04170559.1| Transcriptional regulator mntR [Bacillus mycoides DSM 2048]
 gi|229019422|ref|ZP_04176245.1| Transcriptional regulator mntR [Bacillus cereus AH1273]
 gi|229025666|ref|ZP_04182072.1| Transcriptional regulator mntR [Bacillus cereus AH1272]
 gi|229061895|ref|ZP_04199224.1| Transcriptional regulator mntR [Bacillus cereus AH603]
 gi|228717408|gb|EEL69077.1| Transcriptional regulator mntR [Bacillus cereus AH603]
 gi|228735664|gb|EEL86253.1| Transcriptional regulator mntR [Bacillus cereus AH1272]
 gi|228741892|gb|EEL92069.1| Transcriptional regulator mntR [Bacillus cereus AH1273]
 gi|228747834|gb|EEL97700.1| Transcriptional regulator mntR [Bacillus mycoides DSM 2048]
 gi|228785346|gb|EEM33356.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228818290|gb|EEM64363.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|229071709|ref|ZP_04204925.1| Transcriptional regulator mntR [Bacillus cereus F65185]
 gi|229081462|ref|ZP_04213962.1| Transcriptional regulator mntR [Bacillus cereus Rock4-2]
 gi|229180482|ref|ZP_04307824.1| Transcriptional regulator mntR [Bacillus cereus 172560W]
 gi|229192415|ref|ZP_04319378.1| Transcriptional regulator mntR [Bacillus cereus ATCC 10876]
 gi|228590992|gb|EEK48848.1| Transcriptional regulator mntR [Bacillus cereus ATCC 10876]
 gi|228602906|gb|EEK60385.1| Transcriptional regulator mntR [Bacillus cereus 172560W]
 gi|228701877|gb|EEL54363.1| Transcriptional regulator mntR [Bacillus cereus Rock4-2]
 gi|228711440|gb|EEL63399.1| Transcriptional regulator mntR [Bacillus cereus F65185]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|218507150|ref|ZP_03505028.1| transcriptional regulator, histidine utilization repressor, GntR
          family protein [Rhizobium etli Brasil 5]
          Length = 131

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A    +S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84


>gi|154247275|ref|YP_001418233.1| regulatory protein GntR HTH [Xanthobacter autotrophicus Py2]
 gi|154161360|gb|ABS68576.1| regulatory protein GntR HTH [Xanthobacter autotrophicus Py2]
          Length = 255

 Score = 37.2 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++      ++A    +S   + + L+ L    ++ + RG  GG
Sbjct: 42 DERLPTEEELAAQFGVSRPTVREALKRLAARHLIRSRRGPTGG 84


>gi|328883860|emb|CCA57099.1| Transcriptional regulator, ArsR family [Streptomyces venezuelae
           ATCC 10712]
          Length = 359

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D P   +Q+A  C +S   + + L  L  AG+V   R
Sbjct: 304 DTPASTTQLAAHCGLSPAGVSQHLIALRNAGLVTAHR 340


>gi|228954488|ref|ZP_04116513.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228805145|gb|EEM51739.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAE+  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAESLSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|326382434|ref|ZP_08204126.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326199164|gb|EGD56346.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 93

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R+    A H      +  I+ A  +S+  +   L+ L  AG++E+ R   
Sbjct: 12 LRLFSLIASHEGGEACVCDISPAVDVSQPTISHHLKVLKNAGLLESERRAS 62


>gi|312865929|ref|ZP_07726150.1| transcriptional regulator, MarR family [Streptococcus downei
          F0415]
 gi|311098333|gb|EFQ56556.1| transcriptional regulator, MarR family [Streptococcus downei
          F0415]
          Length = 155

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + +L+  A        +SQ+AE   IS   + +++  LVK G ++
Sbjct: 39 VHLLVLLA--KGERMNLSQLAERRQISRSAVTQMVNRLVKKGYLK 81


>gi|220921050|ref|YP_002496351.1| transcriptional regulator, histidine utilization repressor, GntR
           family [Methylobacterium nodulans ORS 2060]
 gi|219945656|gb|ACL56048.1| transcriptional regulator, histidine utilization repressor, GntR
           family [Methylobacterium nodulans ORS 2060]
          Length = 686

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           S+++     S + + K+L  L +AG++E  R RR G  + RPA Q  +L +
Sbjct: 485 SELSALYGCSRMTVNKVLAGLAEAGLIE--RRRRAGSFVARPARQSAVLQI 533


>gi|167564761|ref|ZP_02357677.1| UbiC transcription regulator-associated protein [Burkholderia
          oklahomensis EO147]
 gi|167571927|ref|ZP_02364801.1| UbiC transcription regulator-associated protein [Burkholderia
          oklahomensis C6786]
          Length = 212

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +S +A    ++   + + +  L + G+V   RGR 
Sbjct: 8  SVSDLAARYDVNRHTIMRAIAELQQHGLVRVERGRG 43


>gi|110834404|ref|YP_693263.1| ribonuclease BN-like family protein [Alcanivorax borkumensis SK2]
 gi|110647515|emb|CAL16991.1| Ribonuclease BN-like family protein [Alcanivorax borkumensis SK2]
          Length = 458

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 48  LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
           LV A ++   R   GG  L R    I++  +V                    P   +  L
Sbjct: 362 LVNANLIR--RTDEGGYILSRDLRNISLGQLVAMLPWPAHTQLRVRQQPESLPWEQA--L 417

Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
            S + +A       L   S++ L
Sbjct: 418 KSRMDEAREGMMAPLD-ISLDAL 439


>gi|75761454|ref|ZP_00741421.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228902721|ref|ZP_04066868.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 4222]
 gi|74491060|gb|EAO54309.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228856908|gb|EEN01421.1| Transcriptional regulator mntR [Bacillus thuringiensis IBL 4222]
          Length = 163

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|116672154|ref|YP_833087.1| hypothetical protein Arth_3612 [Arthrobacter sp. FB24]
 gi|116612263|gb|ABK04987.1| conserved hypothetical protein [Arthrobacter sp. FB24]
          Length = 108

 Score = 37.2 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          +  A+  D   R++ IA+   I+     +IL+ L   G +   R GRR
Sbjct: 28 VLLAVAADPEMRVADIADRVGITPRAALQILKDLESGGYLHRTRVGRR 75


>gi|296130573|ref|YP_003637823.1| CoA-binding domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022388|gb|ADG75624.1| CoA-binding domain protein [Cellulomonas flavigena DSM 20109]
          Length = 231

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R L   A          ++A    +S   L K L  L   G     RG   G  +    
Sbjct: 34  LRALQATAAEGAVLTSSDELAARAGVSPAQLRKDLSFLGSYG----RRGV--GYDVAHLR 87

Query: 71  DQITI----LDVVKAT 82
           +QIT+     DV +  
Sbjct: 88  EQITVVLGLADVRRVL 103


>gi|260776890|ref|ZP_05885784.1| 3-methyladenine DNA glycosylase [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260606556|gb|EEX32830.1| 3-methyladenine DNA glycosylase [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 426

 Score = 37.2 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
          +R L          + ++++AE   IS+ +L ++ Q 
Sbjct: 63 LRALKMIEQGELQTSSLAELAERLGISDRYLRQLFQD 99


>gi|320162166|ref|YP_004175391.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
 gi|319996020|dbj|BAJ64791.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
          Length = 116

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L+  A++ + P+ +S +AE   I++    + L  L   G+V + R  +  V +     
Sbjct: 26 RILILYALN-EKPSNVSTLAEELGITQSAASRHLNVLRDRGLVISQRDGQSVVNMLADPR 84

Query: 72 QITILDVVKAT 82
           I  LD+++A 
Sbjct: 85 VIQALDLLRAV 95


>gi|258512285|ref|YP_003185719.1| transcriptional regulator, DeoR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479011|gb|ACV59330.1| transcriptional regulator, DeoR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 266

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          RVL+   A H        Q+AE   +SE+ + + ++ L   G+VET     GG ++ R A
Sbjct: 8  RVLLELLAQHG--FASYRQLAERLGVSEITVRRDMKALEAQGLVET---AFGGGQVARAA 62

Query: 71 DQ 72
           +
Sbjct: 63 RE 64


>gi|229553854|ref|ZP_04442579.1| plasmid replication protein RepR [Lactobacillus rhamnosus LMS2-1]
 gi|229312784|gb|EEN78757.1| plasmid replication protein RepR [Lactobacillus rhamnosus LMS2-1]
          Length = 491

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLC 67
               ++ +   IS   L K+L  +   G+++ V+  GR GG+ L 
Sbjct: 394 VTTRELRDQLGISSQVLTKVLAYVADYGLLKVVKQYGRHGGLYLT 438


>gi|224500254|ref|ZP_03668603.1| hypothetical protein LmonF1_11484 [Listeria monocytogenes Finland
          1988]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
                  +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 EGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|203284797|ref|YP_002221641.1| RepR protein [Lactobacillus rhamnosus HN001]
 gi|199631686|gb|ACH91662.1| RepR protein [Lactobacillus rhamnosus HN001]
          Length = 494

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLC 67
               ++ +   IS   L K+L  +   G+++ V+  GR GG+ L 
Sbjct: 397 VTTRELRDQLGISSQVLTKVLAYVADYGLLKVVKQYGRHGGLYLT 441


>gi|220914057|ref|YP_002489366.1| TrmB family transcripitonal regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219860935|gb|ACL41277.1| transcriptional regulator, TrmB [Arthrobacter chlorophenolicus
          A6]
          Length = 108

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL--CRP 69
          VL+  A    YP   S +A++  +S   +   L  L   G+V +V  GRR    L   R 
Sbjct: 25 VLLALAQAPSYP---SDLADSIGVSRQSMSNHLTCLRGCGLVVSVPDGRRTRYELADARL 81

Query: 70 ADQIT-ILDVVKATEE 84
             IT +L VV A + 
Sbjct: 82 GHAITDLLGVVLAVDP 97


>gi|158313797|ref|YP_001506305.1| helix-turn-helix type 11 domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158109202|gb|ABW11399.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec]
          Length = 330

 Score = 37.2 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     +  L+   +         ++A    +S   + + +  L +AG+ + +  G
Sbjct: 1  MRSSR-----LMALL-LHLQAHGRATAGELAAQFEVSVRTVRRDVAALAEAGVPLWSEPG 54

Query: 60 RRGGVRL 66
            GG+RL
Sbjct: 55 PHGGIRL 61


>gi|302540256|ref|ZP_07292598.1| LigA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302457874|gb|EFL20967.1| LigA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 371

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 15  MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M    H    P   S++A+   + +  + + L+ L  AG+VE+ R
Sbjct: 300 MELCRHLLGEPITTSELAQRLGLDDTQVSRTLRQLRDAGLVESER 344


>gi|302517433|ref|ZP_07269775.1| DeoR-family protein transcriptional regulator [Streptomyces sp.
          SPB78]
 gi|302426328|gb|EFK98143.1| DeoR-family protein transcriptional regulator [Streptomyces sp.
          SPB78]
          Length = 322

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +L+   +          ++A    ++   + + ++ L   G  V  ++G  GG RL 
Sbjct: 1  MLVLLGLLQRGRSWSGPELAARLGVTSRTVRRDVERLRALGYPVHALQGVGGGYRLG 57


>gi|290959357|ref|YP_003490539.1| GntR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260648883|emb|CBG71997.1| putative gntR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 137

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  +      D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 17 QIVQQTKQALR--LGLLEPGDKLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 72


>gi|260575231|ref|ZP_05843231.1| transcriptional regulator, Crp/Fnr family [Rhodobacter sp. SW2]
 gi|259022491|gb|EEW25787.1| transcriptional regulator, Crp/Fnr family [Rhodobacter sp. SW2]
          Length = 229

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           VL+  A +++     + +A     +   + + L    + G VET RGR   VRL  PA  
Sbjct: 163 VLLELAQNDEVHATQADLAARIGTAREVISRRLDSFARRGWVETDRGR---VRLTNPAAL 219

Query: 73  ITILD 77
             + +
Sbjct: 220 RRLAE 224


>gi|145593895|ref|YP_001158192.1| helix-turn-helix, type 11 domain-containing protein [Salinispora
          tropica CNB-440]
 gi|145303232|gb|ABP53814.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica
          CNB-440]
          Length = 339

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   +++  + + +  L + G  VE+  G  GG RL 
Sbjct: 39 TCAELAERMEVTDRTVRRDIARLRELGYGVESDPGPWGGYRLS 81


>gi|90409365|ref|ZP_01217450.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3]
 gi|90309531|gb|EAS37731.1| transcriptional repressor of aga operon [Psychromonas sp. CNPT3]
          Length = 258

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R L+   +H     +++ +AE   +S + +   L  L K GIV       GG  L +   
Sbjct: 8  RELILFHLHQKGSVQVADLAEMFSVSTVTIRNDLGALEKKGIVT---RAYGGAYLNKA-- 62

Query: 72 QITILD 77
           I++ +
Sbjct: 63 NISLTE 68


>gi|29832243|ref|NP_826877.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29609361|dbj|BAC73412.1| putative transcriptional regulator with cyclic nucleotide-binding
           domain [Streptomyces avermitilis MA-4680]
          Length = 234

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 19/82 (23%)

Query: 7   TDYGIRVLMYCAIHNDYPNRI----------SQIAEACCISELFLFKILQPLVKAGIVET 56
           T    RVL+  A     P              ++AE    SE  + ++L+ L + G+VET
Sbjct: 127 TRVA-RVLLELARAYGRPCATGVSIGVSLTQPELAELVGASEPSVHRVLRSLRERGVVET 185

Query: 57  VRGRRGGVR--LCRPADQITIL 76
                 G R  L R   ++TI 
Sbjct: 186 ------GYRRVLVRDLPELTIA 201


>gi|21222462|ref|NP_628241.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|256786466|ref|ZP_05524897.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289770356|ref|ZP_06529734.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|13122152|emb|CAC32330.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289700555|gb|EFD67984.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 111

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
           A   + P   S++A A  +S   + K L+ L + G+VE+  RGR
Sbjct: 22 LARLGEAPVSASELARALPVSRQAIVKHLEVLREVGLVESERRGR 66


>gi|329851788|ref|ZP_08266469.1| bacterial regulatory protein, arsR family protein [Asticcacaulis
          biprosthecum C19]
 gi|328839637|gb|EGF89210.1| bacterial regulatory protein, arsR family protein [Asticcacaulis
          biprosthecum C19]
          Length = 114

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +++L Y    +       +IAE   +++  L K L  L  AG++  V+
Sbjct: 16 LKILAYL---SKATLTAGEIAERFDMAKPSLSKHLSILENAGLITGVK 60


>gi|71153536|sp|Q9R9U0|SRPS_PSEPU RecName: Full=HTH-type transcriptional regulator srpS; AltName:
          Full=Solvent efflux pump srpABC operon corepressor
 gi|6560605|gb|AAF16681.1|AF061937_1 efflux pump regulator SrpS [Pseudomonas putida]
          Length = 259

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H  +   ++ IA+   +    + +I+  L +  +VE + G  GG RL 
Sbjct: 23 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 75


>gi|46908137|ref|YP_014526.1| birA bifunctional protein [Listeria monocytogenes serotype 4b
          str. F2365]
 gi|47094229|ref|ZP_00231941.1| BirA bifunctional protein [Listeria monocytogenes str. 4b H7858]
 gi|226224508|ref|YP_002758615.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Listeria monocytogenes Clip81459]
 gi|254825601|ref|ZP_05230602.1| birA [Listeria monocytogenes FSL J1-194]
 gi|254852808|ref|ZP_05242156.1| birA [Listeria monocytogenes FSL R2-503]
 gi|254931925|ref|ZP_05265284.1| birA [Listeria monocytogenes HPB2262]
 gi|255520918|ref|ZP_05388155.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Listeria monocytogenes FSL J1-175]
 gi|300763786|ref|ZP_07073783.1| BirA bifunctional protein [Listeria monocytogenes FSL N1-017]
 gi|46881407|gb|AAT04703.1| birA bifunctional protein [Listeria monocytogenes serotype 4b
          str. F2365]
 gi|47017401|gb|EAL08222.1| BirA bifunctional protein [Listeria monocytogenes str. 4b H7858]
 gi|225876970|emb|CAS05679.1| Putative transcriptional regulator and biotin
          acetyl-CoA-carboxylase synthetase [Listeria
          monocytogenes serotype 4b str. CLIP 80459]
 gi|258606135|gb|EEW18743.1| birA [Listeria monocytogenes FSL R2-503]
 gi|293583477|gb|EFF95509.1| birA [Listeria monocytogenes HPB2262]
 gi|293594844|gb|EFG02605.1| birA [Listeria monocytogenes FSL J1-194]
 gi|300515522|gb|EFK42572.1| BirA bifunctional protein [Listeria monocytogenes FSL N1-017]
 gi|328466254|gb|EGF37411.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Listeria monocytogenes 1816]
 gi|332312345|gb|EGJ25440.1| BirA bifunctional protein [Listeria monocytogenes str. Scott A]
          Length = 325

 Score = 37.2 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|307324376|ref|ZP_07603584.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306890107|gb|EFN21085.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 242

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          Y +  +         P  ++ +A    IS   + + LQ L++ G+ V T  GR GG  + 
Sbjct: 8  YAL--VEELRAAAPRPLTVAALAARFEISTRTVQRDLQALMQTGVPVRTTPGRGGGWSIA 65


>gi|312195155|ref|YP_004015216.1| IclR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226491|gb|ADP79346.1| transcriptional regulator, IclR family [Frankia sp. EuI1c]
          Length = 255

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  + VL   A   +      ++A    + +    ++L  L   G+VE  RGR G  
Sbjct: 10 QSVDRAVTVLEILARGGEAGVT--EVAAELGVHKSTASRLLGALEHRGLVEQPRGR-GKY 66

Query: 65 RLC 67
          RL 
Sbjct: 67 RLG 69


>gi|257062956|ref|YP_003142628.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256790609|gb|ACV21279.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 156

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +    +  +A    I+   + K    L   G +E+ RGR              + D+
Sbjct: 32  RPGEQLPTVRALASEISINYNTVNKAYLALKSEGYIESTRGRGA-----------FVRDL 80

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCG-LTSVLRKALNAFFDVLTQYSIEC-LVRNRSS 136
             A E     +    +   DC  V +C  L   L     A    + Q  ++  LV   +S
Sbjct: 81  --AVEVDEEFSHEVDTILGDC--VSACRDLGLTLDDVSRAMDAKIQQIKLDEGLVEPDAS 136


>gi|254992072|ref|ZP_05274262.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes
          FSL J2-064]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|213645961|ref|ZP_03376014.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. J185]
          Length = 176

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|124485464|ref|YP_001030080.1| hypothetical protein Mlab_0640 [Methanocorpusculum labreanum Z]
 gi|124363005|gb|ABN06813.1| putative signal transduction protein with CBS domains
          [Methanocorpusculum labreanum Z]
          Length = 292

 Score = 36.9 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LCRP 69
          +  L+       +P +   IA+    +   +   +  L   G+V+ + G +GG +   R 
Sbjct: 11 LITLISLYHQYSHPIKSEVIADIIRRNPGTVRNQMLALKVLGLVDGIPGPKGGYQPTARA 70

Query: 70 ADQITI 75
            ++ I
Sbjct: 71 YSELNI 76


>gi|325168692|ref|YP_004280482.1| ArsR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064415|gb|ADY68104.1| ArsR family transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 91

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L+      D    + ++A    +S+  L + L  L  A +V+T R
Sbjct: 10 LRILV------DAEIPVGELAHRVGLSQSALSQHLAKLRNANVVQTRR 51


>gi|313608007|gb|EFR84107.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes
          FSL F2-208]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|149377212|ref|ZP_01894960.1| Transcriptional regulator, DeoR family protein [Marinobacter
          algicola DG893]
 gi|149358511|gb|EDM46985.1| Transcriptional regulator, DeoR family protein [Marinobacter
          algicola DG893]
          Length = 318

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL    +         +++AE   +    + + +  L + GI V T +GR GG RL
Sbjct: 7  RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGIPVMTEQGRYGGYRL 63


>gi|294630704|ref|ZP_06709264.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
 gi|292834037|gb|EFF92386.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
          Length = 339

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            +++AE   ++E  + + +  L + G  V++  G  GG RL
Sbjct: 28 TCAELAERTAVTERTVRRDVARLRELGYVVDSEPGPWGGYRL 69


>gi|255691437|ref|ZP_05415112.1| FucR protein [Bacteroides finegoldii DSM 17565]
 gi|260622824|gb|EEX45695.1| FucR protein [Bacteroides finegoldii DSM 17565]
          Length = 331

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 LEGDSLPSINQLSAHYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|167996922|gb|ACA14313.1| transcriptional regulator [uncultured bacterium]
          Length = 120

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 22/103 (21%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L++ T   ++                +IA    +    +   L  L +AG V + R    
Sbjct: 13 LSQDTR--LKAFKLLVSQEPDGLPAGEIARQLSVPHNTMSAHLSVLARAGWVVSKR---- 66

Query: 63 GVRLCRPADQITILDVVKA----TEE--SFFVAECFASHKIDC 99
                 + QI    + +A     E    F + +C A H   C
Sbjct: 67 ------QSRQI----IYRASLSHMEAVVQFLLQDCCAGHPELC 99


>gi|164686859|ref|ZP_02210887.1| hypothetical protein CLOBAR_00455 [Clostridium bartlettii DSM
          16795]
 gi|164604249|gb|EDQ97714.1| hypothetical protein CLOBAR_00455 [Clostridium bartlettii DSM
          16795]
          Length = 298

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           +++ Y   H    +  S++AE   +S   +++ +  L  AGI +   +G+ GG+ L
Sbjct: 7  FKIVYYLLEH--EKSTASELAEKFEVSVRTIYRDIDALSSAGIPICATQGKGGGIYL 61


>gi|33867191|ref|NP_898749.1| ArsR family transcriptional regulator [Rhodococcus erythropolis]
 gi|33669025|gb|AAP74019.1| putative ArsR-family regulator [Rhodococcus erythropolis]
          Length = 141

 Score = 36.9 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   A H      +  I++   +S+  +   L+ L +AG+++  R
Sbjct: 55  LRLLSLVASHEGGEACVCDISDTFDLSQPTISHHLKVLRQAGLLDCER 102


>gi|295687580|ref|YP_003591273.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295429483|gb|ADG08655.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
           ATCC 21756]
          Length = 140

 Score = 36.9 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 18  AIHNDYPNRISQIAEACCIS----ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           A   D     +++A     S     + + ++   L KAG++    G  GG  L +PA+ I
Sbjct: 22  AFSADRAVASAELA----ASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAEAI 77

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
           T+  V+KA      +          CP+       + S +  A  A    L + ++  L+
Sbjct: 78  TLDMVLKAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRSAIEAADAAAAARLGEITVADLL 136

Query: 132 RN 133
            +
Sbjct: 137 AS 138


>gi|239980488|ref|ZP_04703012.1| GntR family transcriptional regulator [Streptomyces albus J1074]
 gi|291452348|ref|ZP_06591738.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291355297|gb|EFE82199.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 129

 Score = 36.9 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  +      D      ++ EA  ++   + K  + L + G+VE  RG
Sbjct: 17 QIVQQTRQALR--LGLLEPGDKLPTAREVVEATAVNPNTVLKAYRELEREGLVEARRG 72


>gi|94310727|ref|YP_583937.1| GntR family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93354579|gb|ABF08668.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans
          CH34]
          Length = 232

 Score = 36.9 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71
                  Q+AE   +S   + ++ + L   G+VE+ +G            G RL   AD
Sbjct: 28 GARLPTGKQLAERYGVSAAVIREVTEHLRSLGMVESRQGLGSTVRSRVSDSGFRLSGGAD 87

Query: 72 QITILDVVK 80
             + D+ +
Sbjct: 88 NTDLADIFE 96


>gi|253581551|ref|ZP_04858776.1| ribonuclease BN [Fusobacterium varium ATCC 27725]
 gi|251836621|gb|EES65156.1| ribonuclease BN [Fusobacterium varium ATCC 27725]
          Length = 419

 Score = 36.9 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRL 66
           IR L+   ++N  P  + ++AE   IS   +  IL    + G+V  V   +     G  +
Sbjct: 305 IRELIRRYLNNLSPVTVKELAERSNISYDVILHILNIFEENGLVAKVINVKNDNEEGFTI 364

Query: 67  CRPADQITILDVVKATEES 85
            +  DQI    +    E S
Sbjct: 365 LQNIDQINFKKIFNILENS 383


>gi|299821209|ref|ZP_07053097.1| GntR family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299816874|gb|EFI84110.1| GntR family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 122

 Score = 36.9 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    I ++A    I+   + K  Q L +  I+ TV+GR 
Sbjct: 32 GDRVPSIRELAALLGINPNTVSKAYQELERLEILSTVKGRG 72


>gi|217963944|ref|YP_002349622.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes
          HCC23]
 gi|217333214|gb|ACK39008.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria monocytogenes
          HCC23]
 gi|307571486|emb|CAR84665.1| bifunctional biotin operon
          repressor/biotin--[acetyl-CoA-carboxylase] synthetase
          [Listeria monocytogenes L99]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|33599846|ref|NP_887406.1| GntR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33567443|emb|CAE31356.1| putative GntR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
          Length = 246

 Score = 36.9 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73
            ++ E   +S   +   L+ L   G++ET +GR GG          L RP      A  I
Sbjct: 46  RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 105

Query: 74  TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           ++ ++++   A E +            D  L      T +L++AL      L 
Sbjct: 106 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPRVEQFLD 156


>gi|304570820|ref|YP_003858729.1| hypothetical protein CCNA_04004 [Caulobacter crescentus NA1000]
          Length = 319

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AI    P  + ++AE   +++  + + L PL + G+VE  R   
Sbjct: 47 LLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 93


>gi|293364448|ref|ZP_06611174.1| adc operon repressor AdcR [Streptococcus oralis ATCC 35037]
 gi|307702588|ref|ZP_07639540.1| putative transcriptional repressor [Streptococcus oralis ATCC
          35037]
 gi|322375152|ref|ZP_08049666.1| adc operon repressor AdcR [Streptococcus sp. C300]
 gi|291317294|gb|EFE57721.1| adc operon repressor AdcR [Streptococcus oralis ATCC 35037]
 gi|307623704|gb|EFO02689.1| putative transcriptional repressor [Streptococcus oralis ATCC
          35037]
 gi|321280652|gb|EFX57691.1| adc operon repressor AdcR [Streptococcus sp. C300]
          Length = 146

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|224283664|ref|ZP_03646986.1| transcription regulator ArsR [Bifidobacterium bifidum NCIMB
          41171]
 gi|313140820|ref|ZP_07803013.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum
          NCIMB 41171]
 gi|313133330|gb|EFR50947.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum
          NCIMB 41171]
          Length = 201

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +R+L   +  +  P  + QIAE    S   +   L+ L KAG V       G
Sbjct: 37 LRILTVMS--DTEPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDG 86


>gi|86751001|ref|YP_487497.1| MarR family transcriptional regulator [Rhodopseudomonas palustris
          HaA2]
 gi|86574029|gb|ABD08586.1| transcriptional regulator, MarR family [Rhodopseudomonas
          palustris HaA2]
          Length = 158

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          RVLM        P  +SQIA+   ++   + KI+  +   G+V T 
Sbjct: 55 RVLMLLV--EGRPLTVSQIADEAVVNISTMAKIINRMTDDGLVTTR 98


>gi|65321590|ref|ZP_00394549.1| COG1321: Mn-dependent transcriptional regulator [Bacillus
          anthracis str. A2012]
 gi|118479392|ref|YP_896543.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis str. Al Hakam]
 gi|228916839|ref|ZP_04080403.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228929248|ref|ZP_04092275.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228935528|ref|ZP_04098345.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228947919|ref|ZP_04110206.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229093261|ref|ZP_04224379.1| Transcriptional regulator mntR [Bacillus cereus Rock3-42]
 gi|229123722|ref|ZP_04252917.1| Transcriptional regulator mntR [Bacillus cereus 95/8201]
 gi|229140937|ref|ZP_04269481.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST26]
 gi|229198331|ref|ZP_04325038.1| Transcriptional regulator mntR [Bacillus cereus m1293]
 gi|118418617|gb|ABK87036.1| iron-dependent repressor [Bacillus thuringiensis str. Al Hakam]
 gi|228585210|gb|EEK43321.1| Transcriptional regulator mntR [Bacillus cereus m1293]
 gi|228642513|gb|EEK98800.1| Transcriptional regulator mntR [Bacillus cereus BDRD-ST26]
 gi|228659857|gb|EEL15502.1| Transcriptional regulator mntR [Bacillus cereus 95/8201]
 gi|228690235|gb|EEL44029.1| Transcriptional regulator mntR [Bacillus cereus Rock3-42]
 gi|228811906|gb|EEM58240.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228824142|gb|EEM69957.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228830538|gb|EEM76148.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228842809|gb|EEM87893.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|299132791|ref|ZP_07025986.1| putative transcriptional regulator, ArsR family [Afipia sp.
          1NLS2]
 gi|298592928|gb|EFI53128.1| putative transcriptional regulator, ArsR family [Afipia sp.
          1NLS2]
          Length = 123

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 14/99 (14%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L++ T   + V      H        +IA    +    +   L  L +AG++E       
Sbjct: 13 LSQPTR--LEVFRLLVKHEPDGLPAGEIARFMGVPHNTMSTHLAILTRAGLIEA------ 64

Query: 63 GVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDC 99
               R +  I     ++A      F V +C       C
Sbjct: 65 ----ARQSRSIVYRAQIEAVRGLAGFLVKDCCGGRPELC 99


>gi|297156072|gb|ADI05784.1| putative IclR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 263

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 17 VELLELLAARGDRPARLRELADELGVPRSSMYALLQTLIDRGWVRT 62


>gi|294786058|ref|ZP_06751343.1| transcriptional regulator, GntR family [Fusobacterium sp. 3_1_27]
 gi|294486280|gb|EFG33645.1| transcriptional regulator, GntR family [Fusobacterium sp. 3_1_27]
          Length = 474

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K++Q L + G + +++G+ 
Sbjct: 32 ENDKFYSVRQISIKYEVNSNTVLKVVQMLEEEGYLYSIKGKG 73


>gi|302540999|ref|ZP_07293341.1| IclR family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458617|gb|EFL21710.1| IclR family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 305

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 10  GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVR 65
            + ++M+ A    +P    ++ +AE   +S+  + ++L PL +  +V  +   GR    +
Sbjct: 55  ALSIVMFLAEDRGHPRGATLTDLAEGLGLSKSTILRLLAPLREVRLVDQDAENGR---YQ 111

Query: 66  LCRPADQITILDVV 79
           L        +  V 
Sbjct: 112 LG--PQNAFLGQVY 123


>gi|256846236|ref|ZP_05551693.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|256718005|gb|EEU31561.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
          Length = 474

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K++Q L + G + +++G+ 
Sbjct: 32 ENDKFYSVRQISIKYEVNSNTVLKVVQMLEEEGYLYSIKGKG 73


>gi|255320151|ref|ZP_05361337.1| transcriptional regulator, IclR family [Acinetobacter
          radioresistens SK82]
 gi|262379249|ref|ZP_06072405.1| predicted protein [Acinetobacter radioresistens SH164]
 gi|255302769|gb|EET82000.1| transcriptional regulator, IclR family [Acinetobacter
          radioresistens SK82]
 gi|262298706|gb|EEY86619.1| predicted protein [Acinetobacter radioresistens SH164]
          Length = 213

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          GI  L   A H      ++Q+AE   I+    ++I + L   G ++T
Sbjct: 10 GIHALELIARHQGQ-LTVAQLAELLEINRTIAYRITRTLTHLGYIKT 55


>gi|228987393|ref|ZP_04147513.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229157801|ref|ZP_04285876.1| Transcriptional regulator mntR [Bacillus cereus ATCC 4342]
 gi|228625758|gb|EEK82510.1| Transcriptional regulator mntR [Bacillus cereus ATCC 4342]
 gi|228772365|gb|EEM20811.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|289580804|ref|YP_003479270.1| hypothetical protein Nmag_1124 [Natrialba magadii ATCC 43099]
 gi|289530357|gb|ADD04708.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
          Length = 75

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELF---LFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +  A+ +  P  ++++A+    S      + +  + L +AG +   RG  G  RL R 
Sbjct: 11 ILAALDSAQPATVAELADVLE-SRPHPMTVERRCRALQQAGYLN--RGPGGAYRLTRA 65


>gi|254976710|ref|ZP_05273182.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255094094|ref|ZP_05323572.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255315845|ref|ZP_05357428.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255518506|ref|ZP_05386182.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255651625|ref|ZP_05398527.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260684668|ref|YP_003215953.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260688326|ref|YP_003219460.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306521428|ref|ZP_07407775.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|260210831|emb|CBA65891.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260214343|emb|CBE06709.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 320

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++D      QI+E   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LNSDKKVTAKQISEKLEINIRTVYRHIDALSASGVPIISDTGHNGGYTL 62


>gi|16801084|ref|NP_471352.1| hypothetical protein lin2018 [Listeria innocua Clip11262]
 gi|16414519|emb|CAC97248.1| birA [Listeria innocua Clip11262]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|315185685|gb|EFU19452.1| transcriptional regulator, ArsR family [Spirochaeta thermophila
          DSM 6578]
          Length = 313

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR-PADQITI 75
              ++QIAE   + +  +   +  L KAG++ET  V G++G  +LCR   ++I +
Sbjct: 37 ETLNVNQIAERLKLPQSTVATNIAILEKAGLIETEIVNGKKGNQKLCRTRYEEIMV 92


>gi|307719148|ref|YP_003874680.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
          6192]
 gi|306532873|gb|ADN02407.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
          6192]
          Length = 313

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR-PADQITI 75
              ++QIAE   + +  +   +  L KAG++ET  V G++G  +LCR   ++I +
Sbjct: 37 ETLNVNQIAERLKLPQSTVATNIAILEKAGLIETEIVNGKKGNQKLCRTRYEEIMV 92


>gi|281355905|ref|ZP_06242398.1| transcriptional regulator, GntR family with LacI sensor
          [Victivallis vadensis ATCC BAA-548]
 gi|281317274|gb|EFB01295.1| transcriptional regulator, GntR family with LacI sensor
          [Victivallis vadensis ATCC BAA-548]
          Length = 371

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++AE   +S   + K L  L   G +  VRGR 
Sbjct: 34 ELAERFGVSRQTVLKALDLLKNEGFLTGVRGRG 66


>gi|302541391|ref|ZP_07293733.1| IclR-family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302459009|gb|EFL22102.1| IclR-family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 264

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          +++L   A   D P R+ ++AE   +    ++ +LQ L+  G V T
Sbjct: 17 VQLLEVLAARGDQPARLRELAEELDVPRSSMYALLQTLIDRGWVRT 62


>gi|225619115|ref|YP_002720341.1| ribonuclease BN [Brachyspira hyodysenteriae WA1]
 gi|225213934|gb|ACN82668.1| Ribonuclease BN, Ribonuclease BN-like family [Brachyspira
           hyodysenteriae WA1]
          Length = 552

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69
           + ++ Y  I       + ++A+    +   + +I +PL K+  V +   G      L  P
Sbjct: 434 MHIISYRFIKRKKAITMYELAKELRTAPTIITEISEPLEKSMYVIKISNGPNISYSLGCP 493

Query: 70  ADQITILDVVKAT--EESF 86
            + ITI DV+ +   E  F
Sbjct: 494 PESITIGDVLYSLRMEGGF 512


>gi|168186280|ref|ZP_02620915.1| HTH domain family [Clostridium botulinum C str. Eklund]
 gi|169295800|gb|EDS77933.1| HTH domain family [Clostridium botulinum C str. Eklund]
          Length = 157

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66
          I++L+     +    +I +IAE   ++E  +      L +A   + +  G+ GG  L
Sbjct: 8  IKMLILL--KSRGKMKIKEIAEILEVNERSIRMYKNELEQAQIYINSTSGKYGGYEL 62


>gi|115378527|ref|ZP_01465683.1| transcriptional regulator MarR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822379|ref|YP_003954737.1| MarR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364449|gb|EAU63528.1| transcriptional regulator MarR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395451|gb|ADO72910.1| Transcriptional regulator, MarR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 160

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 21/113 (18%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--ITI----L 76
            P  I ++A    +S   + + +  + + G+V    G        + A +  IT+     
Sbjct: 47  EPATIRELATRAGLSHSAMSQTIAQMTRHGLVTAKPG--------QDARERIITLTPKAA 98

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
            ++ A E  + V E  A+  +D  L     L  VLR+A++A    L + S   
Sbjct: 99  AMLTALERQWRVTE-AAARSLDTDLGM--PLADVLRQAIDA----LDRRSFGD 144


>gi|110679546|ref|YP_682553.1| GntR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109455662|gb|ABG31867.1| transcriptional regulator, GntR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 252

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQITILDVVKA 81
           +++AE   +S   + + L+ L    ++ T RG  GG  + R         QIT   ++ +
Sbjct: 38  AELAEHFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLS 97

Query: 82  TEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAF 118
                F   C A + ++  C PL         L       
Sbjct: 98  MNAVSFSTACEARYALERACSPLSAERRTADHLATMRAEI 137


>gi|33591443|ref|NP_879087.1| GntR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33571085|emb|CAE40577.1| putative GntR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332380844|gb|AEE65691.1| GntR family transcriptional regulator [Bordetella pertussis CS]
          Length = 246

 Score = 36.9 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73
            ++ E   +S   +   L+ L   G++ET +GR GG          L RP      A  I
Sbjct: 46  RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 105

Query: 74  TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           ++ ++++   A E +            D  L      T +L++AL      L 
Sbjct: 106 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPHVEQFLD 156


>gi|229075913|ref|ZP_04208889.1| Transcriptional regulator mntR [Bacillus cereus Rock4-18]
 gi|228707228|gb|EEL59425.1| Transcriptional regulator mntR [Bacillus cereus Rock4-18]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|229098676|ref|ZP_04229616.1| Transcriptional regulator mntR [Bacillus cereus Rock3-29]
 gi|229104833|ref|ZP_04235493.1| Transcriptional regulator mntR [Bacillus cereus Rock3-28]
 gi|229117701|ref|ZP_04247071.1| Transcriptional regulator mntR [Bacillus cereus Rock1-3]
 gi|228665793|gb|EEL21265.1| Transcriptional regulator mntR [Bacillus cereus Rock1-3]
 gi|228678550|gb|EEL32767.1| Transcriptional regulator mntR [Bacillus cereus Rock3-28]
 gi|228684755|gb|EEL38693.1| Transcriptional regulator mntR [Bacillus cereus Rock3-29]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|229186446|ref|ZP_04313610.1| Transcriptional regulator mntR [Bacillus cereus BGSC 6E1]
 gi|228597073|gb|EEK54729.1| Transcriptional regulator mntR [Bacillus cereus BGSC 6E1]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|281357329|ref|ZP_06243818.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
 gi|281316360|gb|EFB00385.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
          Length = 302

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           R+L Y     D P  I ++AE   +S+  L ++ + 
Sbjct: 200 RILRYLEARLDQPVSIGELAEEFRLSQATLRRLFRK 235


>gi|126668457|ref|ZP_01739413.1| hypothetical protein MELB17_13277 [Marinobacter sp. ELB17]
 gi|126627074|gb|EAZ97715.1| hypothetical protein MELB17_13277 [Marinobacter sp. ELB17]
          Length = 116

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 28/118 (23%)

Query: 3   LTKRTDY-GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L++ T     R+L+    H        ++A    +    +   L  L +A +V + R   
Sbjct: 13  LSQETRLEAFRLLV---RHEPEGLPAGEVARQLGVPHNTMSAHLSVLARAELVLSQR--- 66

Query: 62  GGVRLCRPADQITILDVVKA----TEES--FFVAECFASHKIDC-PLVGS---CGLTS 109
                   +  I    + +A     +E+  F V +C A H   C PL  S   C   S
Sbjct: 67  -------QSRSI----IYRANLNCVQETIKFLVNDCCAGHPQVCEPLTSSLIACSTQS 113


>gi|33867148|ref|NP_898706.1| ArsR family transcriptional regulator [Rhodococcus erythropolis]
 gi|33668982|gb|AAP73976.1| putative ArsR-family regulator [Rhodococcus erythropolis]
          Length = 142

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 3   LTKRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV- 57
           L++   Y +    R  +  ++  + P   S +A+   +S   L   L  L   G+V  V 
Sbjct: 43  LSRFG-YALSDSTRTQVLLSLR-ETPGYPSDLADQIGVSRQILSNHLACLRGCGLVVAVP 100

Query: 58  RGRRGGVRLCRPADQI--TIL---DVVKATEESFFVAECFASHKIDC 99
            GRR    L  P  +I  T+    D+V A + +     C  S    C
Sbjct: 101 EGRRTRYELADP--RIGDTLGQLMDLVLAVDPTL----CPKSDAEGC 141


>gi|16127379|ref|NP_421943.1| MarR family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|13424817|gb|AAK25111.1| transcriptional regulator, MarR family [Caulobacter crescentus
          CB15]
          Length = 317

 Score = 36.9 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AI    P  + ++AE   +++  + + L PL + G+VE  R   
Sbjct: 45 LLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 91


>gi|323359279|ref|YP_004225675.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275650|dbj|BAJ75795.1| transcriptional regulator [Microbacterium testaceum StLB037]
          Length = 257

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 20/82 (24%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG------- 59
           D  +R+L   A     P     IA    I     + +L  L + G V  + G       
Sbjct: 12 ADQTLRILSLLARQPG-PVAAQTIATTLGIPRSSTYHLLATLEQHGYVVHLPGDRRWGLG 70

Query: 60 -----RRGGV-------RLCRP 69
                 GG        RL RP
Sbjct: 71 TAAFELGGGYARQQPLARLGRP 92


>gi|319951526|ref|ZP_08025331.1| PaaX family transcriptional regulator [Dietzia cinnamea P4]
 gi|319434823|gb|EFV90138.1| PaaX family transcriptional regulator [Dietzia cinnamea P4]
          Length = 103

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67
           VL+  A       R+  +A+A  I+E    +I+  L +AG +E VR GRR    L    
Sbjct: 15 HVLLCIAQDPG--MRLRDVADAVGITERAAQRIVAELEQAGYLERVRDGRRNRYHLNQEL 72

Query: 68 --RPA--DQITILDVVKAT 82
            R        + +++   
Sbjct: 73 PLRHPLERDHAVGEILSVL 91


>gi|293552991|ref|ZP_06673637.1| RepE [Enterococcus faecium E1039]
 gi|291602846|gb|EFF33052.1| RepE [Enterococcus faecium E1039]
          Length = 449

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 329 MAYISEKSDVYKPYLATTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388

Query: 67  C 67
            
Sbjct: 389 A 389


>gi|260599201|ref|YP_003211772.1| hypothetical protein CTU_34090 [Cronobacter turicensis z3032]
 gi|260218378|emb|CBA33431.1| unknown protein [Cronobacter turicensis z3032]
          Length = 219

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             D  N    I     +S+ ++ K+   L K G ++  RGR
Sbjct: 168 ERDEINACDFIRGKTNLSQSYILKVFSDLRKGGYIDISRGR 208


>gi|257885877|ref|ZP_05665530.1| replication protein E [Enterococcus faecium 1,231,501]
 gi|257821733|gb|EEV48863.1| replication protein E [Enterococcus faecium 1,231,501]
          Length = 449

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 329 MAYISEKSDVYKPYLATTKKEIREALGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388

Query: 67  C 67
            
Sbjct: 389 A 389


>gi|302531666|ref|ZP_07284008.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302440561|gb|EFL12377.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 320

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   +S   +   ++ L   G  V   RG  GG RL 
Sbjct: 22 TGAELAERLSVSARTIRNDVERLRTLGYPVHGSRGAVGGYRLG 64


>gi|290894258|ref|ZP_06557226.1| birA protein [Listeria monocytogenes FSL J2-071]
 gi|290556197|gb|EFD89743.1| birA protein [Listeria monocytogenes FSL J2-071]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGTYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|229031851|ref|ZP_04187839.1| Transcriptional regulator mntR [Bacillus cereus AH1271]
 gi|229163151|ref|ZP_04291106.1| Transcriptional regulator mntR [Bacillus cereus R309803]
 gi|228620214|gb|EEK77085.1| Transcriptional regulator mntR [Bacillus cereus R309803]
 gi|228729469|gb|EEL80458.1| Transcriptional regulator mntR [Bacillus cereus AH1271]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|288551488|ref|YP_003422542.1| hypothetical protein pSSVi_p2 [Sulfolobus solfataricus P2]
 gi|77176919|gb|ABA64555.1| hypothetical protein [Sulfolobus solfataricus P2]
          Length = 735

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           A+ +D   R  +IA+   +S+ +   +L+ L + G++E
Sbjct: 499 ALPDDGSLRSQEIADRLRVSKQYAINVLKNLERKGVIE 536


>gi|33595462|ref|NP_883105.1| GntR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33565540|emb|CAE40181.1| putative GntR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 261

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRP------ADQI 73
            ++ E   +S   +   L+ L   G++ET +GR GG          L RP      A  I
Sbjct: 61  RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARGI 120

Query: 74  TILDVVK---ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           ++ ++++   A E +            D  L      T +L++AL      L 
Sbjct: 121 SLQEMIEARVAIEPTIAELAALRRTPED--LQALIQATDLLQEALPRVEQFLD 171


>gi|328881894|emb|CCA55133.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 319

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +      +++A    +SE  + +    L +AG+ V   RGR GG RL
Sbjct: 9  LVLLLQSRPSMTAAELAAELEVSERTITRDALALSEAGVPVYADRGRGGGYRL 61


>gi|295400047|ref|ZP_06810027.1| transcriptional regulator, IclR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312110703|ref|YP_003989019.1| IclR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977826|gb|EFG53424.1| transcriptional regulator, IclR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215804|gb|ADP74408.1| transcriptional regulator, IclR family [Geobacillus sp. Y4.1MC1]
          Length = 261

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + + +           +++IA+   I++  +++IL  LV+ G VE
Sbjct: 13 ALHI-IDIVSSKKEGLGVTEIAKQMDINKSSVYRILSTLVQHGYVE 57


>gi|296131327|ref|YP_003638577.1| transcriptional regulator, MarR family [Cellulomonas flavigena
          DSM 20109]
 gi|296023142|gb|ADG76378.1| transcriptional regulator, MarR family [Cellulomonas flavigena
          DSM 20109]
          Length = 164

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           DY  +VL + ++  D   R+  +A    ++   L +I+  L   G V 
Sbjct: 43 ADY--QVLAWLSMAPDRTRRMRDLAARADVTLSHLSRIVARLEDRGWVR 89


>gi|213022044|ref|ZP_03336491.1| putative GntR-family regulatory protein [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 144

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +IA +  +S + + +    L+ AGI+ + RG  
Sbjct: 41 KEIARSYNVSLIVVKQAWSELINAGIISSQRGSG 74


>gi|156932662|ref|YP_001436578.1| hypothetical protein ESA_00446 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530916|gb|ABU75742.1| hypothetical protein ESA_00446 [Cronobacter sakazakii ATCC BAA-894]
          Length = 219

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 13  VLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            L+  A  N+      N    I     +S+ ++ K+   L K   ++  RGR
Sbjct: 157 CLIELAAKNEQEREEINACDFIRGKTNLSQSYILKVFSDLRKGDYIDISRGR 208


>gi|116873339|ref|YP_850120.1| bifunctional protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742217|emb|CAK21341.1| bifunctional protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|119720465|ref|YP_920960.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5]
 gi|119525585|gb|ABL78957.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5]
          Length = 233

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + Y I+   Y A+       +S++A+   IS    + +L  L   G++ +V GR
Sbjct: 22 FSRYEIKA--YLALLIRGVATVSEVADLSGISYTKAYDVLSSLENKGLLASVPGR 74


>gi|88602916|ref|YP_503094.1| ArsR family transcriptional regulator [Methanospirillum hungatei
          JF-1]
 gi|88188378|gb|ABD41375.1| transcriptional regulator, ArsR family [Methanospirillum hungatei
          JF-1]
          Length = 297

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++++            +S++A    IS+  + + L+ L   GIV++ R
Sbjct: 33 LKIIYLLTCDTTGTLGVSELASRLGISQPAVSQHLKTLKSEGIVDSRR 80


>gi|94309778|ref|YP_582988.1| GntR family transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353630|gb|ABF07719.1| Transcriptional regulator (GntR family) [Cupriavidus metallidurans
           CH34]
          Length = 272

 Score = 36.9 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-------- 72
            D     S+I     +S   + + L  L  +G+VET  G  G   L RPA+         
Sbjct: 62  GDKLPTESEIMARLGVSRTVVREALSRLQASGMVETRHGI-GTFVLNRPAETQSPFRIDP 120

Query: 73  ---ITILDVVKATE 83
              +T +DV+   E
Sbjct: 121 SAIVTAMDVLAMLE 134


>gi|320536828|ref|ZP_08036824.1| transcriptional regulator, GntR family [Treponema phagedenis
          F0421]
 gi|320146337|gb|EFW37957.1| transcriptional regulator, GntR family [Treponema phagedenis
          F0421]
          Length = 119

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    +  +A    ++   ++++   L  AG +E+ RGR 
Sbjct: 28 QGEKMPSLQDMALQMDVNPNTMYRVYTELESAGCIESQRGRG 69


>gi|313623172|gb|EFR93433.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria innocua FSL
          J1-023]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|311106060|ref|YP_003978913.1| transcriptional regulator family protein 16 [Achromobacter
          xylosoxidans A8]
 gi|310760749|gb|ADP16198.1| bacterial transcriptional regulator family protein 16
          [Achromobacter xylosoxidans A8]
          Length = 252

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +R L        +  P  ++ + +A  + +  + +IL  LV AG++
Sbjct: 8  ALRALTLLEQVARSGQPVSLAALTDATGLPKPSVLRILSRLVDAGML 54


>gi|302349143|ref|YP_003816781.1| Predicted transcription regulator, ArsR family [Acidilobus
          saccharovorans 345-15]
 gi|302329555|gb|ADL19750.1| Predicted transcription regulator, ArsR family [Acidilobus
          saccharovorans 345-15]
          Length = 105

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++  +  +R++   A     P   +QIAEA  ++   +   L+ LV++G+V T  G R G
Sbjct: 22 SRGGEMRLRIVELLAK---GPANANQIAEALGVNYRTVRHHLELLVESGLVIT-EGPRYG 77

Query: 64 --VRLCRPADQITILDV 78
              L +   + ++  V
Sbjct: 78 QLYYLSKDMLE-SLGRV 93


>gi|302523555|ref|ZP_07275897.1| GntR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|302432450|gb|EFL04266.1| GntR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 140

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++    +R L + A   D     +Q+     I+   +FK  + L + G+V++ +G  
Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73


>gi|288941255|ref|YP_003443495.1| ArsR family transcriptional regulator [Allochromatium vinosum DSM
          180]
 gi|288896627|gb|ADC62463.1| transcriptional regulator, ArsR family [Allochromatium vinosum
          DSM 180]
          Length = 315

 Score = 36.9 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R L+  A   +    + ++ +A  + +  + + L  L + G+V+  R
Sbjct: 19 LRCLLLLATQGE--LCVCELTQATGVVQPHVSRHLAQLRELGLVQDRR 64


>gi|326328735|ref|ZP_08195073.1| putative GntR-family transcriptional regulator [Nocardioidaceae
          bacterium Broad-1]
 gi|325953478|gb|EGD45480.1| putative GntR-family transcriptional regulator [Nocardioidaceae
          bacterium Broad-1]
          Length = 131

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  +  + +R  +      D    +  +     I+   + K  + L  AG+V    G  
Sbjct: 18 QIVTQVRHALR--LGLLREGDQLPTVKDVVSRLAINPNTVSKAYRELEHAGLVTARAGVG 75


>gi|313622857|gb|EFR93172.1| putative cyclic nucleotide-binding protein [Listeria innocua FSL
           J1-023]
          Length = 233

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQ------IAEACCISELFLFKILQPLVKAGIVET 56
           L    DYG+RV       ++    + +      +A+    S+ +  K+L  L + GI+E+
Sbjct: 155 LNTMIDYGLRV-------SEKTVELPKFLTYQILADHSNTSKSYTSKVLSNLREKGILES 207

Query: 57  VR 58
            +
Sbjct: 208 QK 209


>gi|306826109|ref|ZP_07459445.1| adc operon repressor AdcR [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304431825|gb|EFM34805.1| adc operon repressor AdcR [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 146

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|255528412|ref|ZP_05395211.1| Helix-turn-helix type 11 domain protein [Clostridium
          carboxidivorans P7]
 gi|296184883|ref|ZP_06853294.1| HTH domain protein [Clostridium carboxidivorans P7]
 gi|255507893|gb|EET84334.1| Helix-turn-helix type 11 domain protein [Clostridium
          carboxidivorans P7]
 gi|296050665|gb|EFG90088.1| HTH domain protein [Clostridium carboxidivorans P7]
          Length = 317

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          M   +        +++AE   + +  +++ +  L KA I V T +GR GG  
Sbjct: 10 MIITLQYKGLTTATELAETLEVDKKTIYRYINSLNKANIPVHTKKGRYGGFY 61


>gi|240172985|ref|ZP_04751643.1| putative transcriptional regulatory protein [Mycobacterium kansasii
           ATCC 12478]
          Length = 130

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +       + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 54  VRIAIVLQLRESQRC-VHELVDALGVPQPLVSQHLKILKAAGVVTGERSGREVLYRLADH 112

Query: 69  PADQITILDVVKATEES 85
               I +  V  A+EES
Sbjct: 113 HLAHIVVDAVAHASEES 129


>gi|167759380|ref|ZP_02431507.1| hypothetical protein CLOSCI_01727 [Clostridium scindens ATCC
          35704]
 gi|167662937|gb|EDS07067.1| hypothetical protein CLOSCI_01727 [Clostridium scindens ATCC
          35704]
          Length = 302

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG------GVRLCR 68
                   +AE   +S   + + ++ L KAGI + TV+G  G      G RL R
Sbjct: 15 QQQRVTAPYLAERFEVSRRTINRDIEDLCKAGIPLVTVQGANGGISIMEGYRLNR 69


>gi|146338500|ref|YP_001203548.1| hypothetical protein BRADO1418 [Bradyrhizobium sp. ORS278]
 gi|146191306|emb|CAL75311.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 326

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +         ++A+AC +S   +++ +  L  AGI V   RG  GG RL
Sbjct: 13 LQAKGQVTAPELAQACEVSVRTIYRDIDALSAAGIPVYAERGAEGGFRL 61


>gi|25027022|ref|NP_737076.1| putative transcription repressor [Corynebacterium efficiens
          YS-314]
 gi|23492302|dbj|BAC17276.1| putative transcription repressor [Corynebacterium efficiens
          YS-314]
          Length = 124

 Score = 36.9 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + +L     H D     + +A+A  IS   +   ++ LV A +V 
Sbjct: 50 LSILYLITTHPDGRVSSNALAQALGISAPTVTHHMKKLVSARLVT 94


>gi|329945026|ref|ZP_08292976.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529487|gb|EGF56391.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 370

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           R ++ C   +D P++I+ IAE       ++      L+ AGI++T
Sbjct: 299 RTMLVCIAKDDGPSQIADIAERMDRPVNYVSVYRNRLLTAGIIKT 343


>gi|315612219|ref|ZP_07887133.1| adc operon repressor AdcR [Streptococcus sanguinis ATCC 49296]
 gi|315315612|gb|EFU63650.1| adc operon repressor AdcR [Streptococcus sanguinis ATCC 49296]
          Length = 146

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 7  TDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +D  +      +LM     ++     S++A    +S+  + K ++ LVK G++ET R
Sbjct: 32 SDVALTNTQEHILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSR 85


>gi|229495956|ref|ZP_04389680.1| ribonuclease BN [Porphyromonas endodontalis ATCC 35406]
 gi|229317048|gb|EEN82957.1| ribonuclease BN [Porphyromonas endodontalis ATCC 35406]
          Length = 436

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 2   HLTKR-TDYGIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
            +++R TD+ + VL+   I        +  P  + Q+A+ C I       I++ L+   +
Sbjct: 294 KVSRRYTDF-LTVLIMAHIVQRFVDPKSQEPYTVEQLADQCHIPVKLTTMIVRQLLALNL 352

Query: 54  VE----TVRGRRGGVRLCRPADQITILDVVKATE 83
           +     T + R G        + +T+  ++   +
Sbjct: 353 IVEVKYTKQSRTGNYYPAVDPETLTVGSLIARLD 386


>gi|254474036|ref|ZP_05087429.1| GntR-family transcriptional regulator [Pseudovibrio sp. JE062]
 gi|211956925|gb|EEA92132.1| GntR-family transcriptional regulator [Pseudovibrio sp. JE062]
          Length = 254

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 24/121 (19%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV- 79
            D      +I+E   +S   +   +  L   G+V+  +G  G   L  P       DV+ 
Sbjct: 29  GDKLPTERKISEDLGVSRSLVRDAMIMLEVQGLVDVRKG-SGTYVLRLP------GDVMP 81

Query: 80  -KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
             A E      E   +               +L   + AF   +   +   +++ R ++ 
Sbjct: 82  DSALETDIGPFELLQA-------------RQLLESNIAAFAATMA--TKADIIQMRETLA 126

Query: 139 K 139
           K
Sbjct: 127 K 127


>gi|210618010|ref|ZP_03291845.1| hypothetical protein CLONEX_04078 [Clostridium nexile DSM 1787]
 gi|210149003|gb|EEA80012.1| hypothetical protein CLONEX_04078 [Clostridium nexile DSM 1787]
          Length = 304

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCR 68
           +R+L       +    +++IAE   I        ++ L +AG++ET      RG +++CR
Sbjct: 28  LRILSEL---EERAYNVNEIAECLQIPASSAALHVRVLEEAGLIETELRAAVRGSMKICR 84

Query: 69  PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
                  +D+ +  E           + +D  +  +CG+ S      + + DV  + S+
Sbjct: 85  KKVDGIFIDLQQEEEGEIDEIRMPIGNYVDYHVEPTCGIVS-----QDGYIDVEDEASV 138


>gi|170016654|ref|YP_001727573.1| biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc citreum KM20]
 gi|169803511|gb|ACA82129.1| Biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc citreum KM20]
          Length = 326

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+Y  I  D       IA++  ++   ++K +Q L   G  +E+VRG+  G R    A  
Sbjct: 7  LLYLLIQADGWVSGELIAQSLGMTRTSIWKSVQKLEAQGHTIESVRGQ--GYRYVEGAK- 63

Query: 73 ITILDV 78
          I++  +
Sbjct: 64 ISVAGI 69


>gi|83589342|ref|YP_429351.1| DeoR family transcriptional regulator [Moorella thermoacetica
          ATCC 39073]
 gi|83572256|gb|ABC18808.1| transcriptional regulator, DeoR family [Moorella thermoacetica
          ATCC 39073]
          Length = 254

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-RPADQIT 74
          A+       ++++A+    S   + + L+ L +AG++   R   GG  L  R  +++T
Sbjct: 13 ALQQKGWLSVTELAQIVGASPATVRRDLKELERAGVLIRTR---GGTCLADRLPEEMT 67


>gi|315282931|ref|ZP_07871226.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria marthii FSL
          S4-120]
 gi|313613419|gb|EFR87268.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria marthii FSL
          S4-120]
          Length = 325

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +IA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 DGAYLSGQEIADSLGCSRTAVWKQMEALRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|311108376|ref|YP_003981229.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
          A8]
 gi|310763065|gb|ADP18514.1| bacterial regulatory protein, GntR family protein 55
          [Achromobacter xylosoxidans A8]
          Length = 279

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 12 RVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          RVLM        +D  +   +++E   +S + + + +Q LV  G +  VRG  
Sbjct: 34 RVLMMILNWQQESDRFHTDHELSEQFDVSRMTVRQAIQELVDEGYLRRVRGSG 86


>gi|307323681|ref|ZP_07602891.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
 gi|306891170|gb|EFN22146.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
          Length = 260

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62
          +  D  + +L   A     P+ +++IAE   I +  +F++L  L   G+VE  T RGR  
Sbjct: 14 QSVDRAVSILQVLAKQG--PSGVTEIAEELGIHKSTVFRLLATLESRGMVEQDTERGRYR 71

Query: 63 -GVRLCRPAD 71
           G  +   A 
Sbjct: 72 IGYTMAELAA 81


>gi|256375418|ref|YP_003099078.1| GntR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255919721|gb|ACU35232.1| transcriptional regulator, GntR family [Actinosynnema mirum DSM
          43827]
          Length = 233

 Score = 36.9 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +A    I+   + K +  L   G+V +VR R 
Sbjct: 31 EDLAAEYGININTVRKTVATLEAEGLVTSVRRRG 64


>gi|328948750|ref|YP_004366087.1| transcription regulator [Treponema succinifaciens DSM 2489]
 gi|328449074|gb|AEB14790.1| transcription regulator [Treponema succinifaciens DSM 2489]
          Length = 312

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          L+Y  + +        +AE   +SE  + +  + L +AG+ V + +GR GG  +   
Sbjct: 9  LVYI-LLDKKSVTAKNLAEHFGVSERTILRWAESLAEAGVPVYSTQGRYGGFSIAEN 64


>gi|311030901|ref|ZP_07708991.1| manganese transport transcriptional regulator [Bacillus sp.
          m3-13]
          Length = 141

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I +    R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEDKGYARVSDIAEALAVHPSSVTKMVQKLDKDQYLIYEKYRGLVLTTKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|229174879|ref|ZP_04302399.1| Transcriptional regulator mntR [Bacillus cereus MM3]
 gi|228608547|gb|EEK65849.1| Transcriptional regulator mntR [Bacillus cereus MM3]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|163735106|ref|ZP_02142542.1| transcriptional regulator, GntR family, putative [Roseobacter
           litoralis Och 149]
 gi|161391564|gb|EDQ15897.1| transcriptional regulator, GntR family, putative [Roseobacter
           litoralis Och 149]
          Length = 243

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQITILDVVKA 81
           +++AE   +S   + + L+ L    ++ T RG  GG  + R         QIT   ++ +
Sbjct: 38  AELAEQFDVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRISFQDAYPQQITTSTLLLS 97

Query: 82  TEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAF 118
                F   C A + ++  C PL         L       
Sbjct: 98  MNAVSFSTACEARYALERACAPLSAERRTADHLATMRAEI 137


>gi|188583560|ref|YP_001927005.1| Crp/Fnr family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347058|gb|ACB82470.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium populi BJ001]
          Length = 253

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 11  IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+      D    P     +A    +   +L +IL+ L + G++E  RGR
Sbjct: 156 LRWLLTLQDRLDSNVLPITQEALAAMLGVQRTYLTRILRMLQQQGLIEVGRGR 208


>gi|45657030|ref|YP_001116.1| DeoR family transcriptional regulator [Leptospira interrogans
          serovar Copenhageni str. Fiocruz L1-130]
 gi|45600267|gb|AAS69753.1| putative transcriptional regulator (DeoR family) [Leptospira
          interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 317

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          R+L +   +          +A+   +SE  + + ++ L  +GI V   RG +GG  L  
Sbjct: 5  RLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVYAERGSKGGWELSE 63


>gi|18977111|ref|NP_578468.1| AsnC family transcriptional regulator [Pyrococcus furiosus DSM
           3638]
 gi|18892756|gb|AAL80863.1| transcriptional regulatory protein, asnC family [Pyrococcus
           furiosus DSM 3638]
          Length = 266

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           L+Y  + +D    IS++A+   +S   +   L+ L K GI++       G  +    +
Sbjct: 71  LIYL-LMDDARLSISELADRLGVSRPTIRSRLEKLEKEGIIQ-------GYTIKLNPE 120


>gi|73748676|ref|YP_307915.1| hypothetical protein cbdb_A858 [Dehalococcoides sp. CBDB1]
 gi|147669435|ref|YP_001214253.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1]
 gi|289432702|ref|YP_003462575.1| hypothetical protein DehalGT_0753 [Dehalococcoides sp. GT]
 gi|73660392|emb|CAI82999.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
 gi|146270383|gb|ABQ17375.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1]
 gi|288946422|gb|ADC74119.1| Helix-turn-helix type 11 domain protein [Dehalococcoides sp. GT]
          Length = 111

 Score = 36.9 bits (85), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
          T++ + VL + A H+       +IAE   I+E  + KI+  L   G +   + GR    R
Sbjct: 8  TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYIAKKKEGRGIKYR 64

Query: 66 LCRPAD-------QITILDVVK 80
          +            +I I D ++
Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86


>gi|298250804|ref|ZP_06974608.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297548808|gb|EFH82675.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 341

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +        +Q+A    +S   +++ LQ L   G+ V T RG  GG+ L
Sbjct: 10 ILLILQRKRSVSAAQLARQFEVSTRTIYRDLQTLSALGVPVYTSRGHGGGIHL 62


>gi|229086779|ref|ZP_04218942.1| Transcriptional regulator mntR [Bacillus cereus Rock3-44]
 gi|228696500|gb|EEL49322.1| Transcriptional regulator mntR [Bacillus cereus Rock3-44]
          Length = 163

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|288549994|ref|ZP_05968917.2| transcriptional regulator, GntR family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316925|gb|EFC55863.1| transcriptional regulator, GntR family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 497

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 10  GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +R+L+     A++   P    ++A +  +S   +   L  L + G +E+  G  
Sbjct: 58  ALRLLILDGRLALNTRLPGE-RELATSLNVSRTTISSALAHLREEGYLESRHGSG 111


>gi|209546305|ref|YP_002278195.1| GntR family transcriptional regulator [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209539162|gb|ACI59095.1| transcriptional regulator, histidine utilization repressor, GntR
          family [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 240

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A    +S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84


>gi|270308179|ref|YP_003330237.1| transcriptional regulator [Dehalococcoides sp. VS]
 gi|270154071|gb|ACZ61909.1| transcriptional regulator [Dehalococcoides sp. VS]
          Length = 111

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
          T++ + VL + A H+       +IAE   I+E  + KI+  L   G +   + GR    R
Sbjct: 8  TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYIAKKKEGRGIKYR 64

Query: 66 LCRPAD-------QITILDVVK 80
          +            +I I D ++
Sbjct: 65 INPDLSLRHESYQEIIIGDFLE 86


>gi|29830608|ref|NP_825242.1| GntR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29607720|dbj|BAC71777.1| putative GntR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 132

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  +      D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 21 QIVQQTKQALR--LGLLEPGDKLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 76


>gi|5759267|gb|AAD51062.1|AF175293_7 unknown [Enterococcus faecium]
          Length = 302

 Score = 36.9 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + C +         ++AE   +S   + + L  L  AG  V T +G  GG+ L
Sbjct: 9  ILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISL 61


>gi|261404091|ref|YP_003240332.1| ArsR family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261280554|gb|ACX62525.1| transcriptional regulator, ArsR family [Paenibacillus sp.
          Y412MC10]
          Length = 310

 Score = 36.9 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +D  +R+L       D P  + Q+AEA  I++  +   +Q L +A ++ + +G  
Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQGAN 76


>gi|159044867|ref|YP_001533661.1| regulatory protein [Dinoroseobacter shibae DFL 12]
 gi|157912627|gb|ABV94060.1| regulatory protein [Dinoroseobacter shibae DFL 12]
          Length = 242

 Score = 36.9 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +++AE   +S   + + L+ L    ++ T RG  GG
Sbjct: 38 AELAERFEVSRPTVREALKRLAAQNLIRTQRGATGG 73


>gi|329923250|ref|ZP_08278735.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
 gi|328941485|gb|EGG37776.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
          Length = 310

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +D  +R+L       D P  + Q+AEA  I++  +   +Q L +A ++ + +G  
Sbjct: 25 SDVRVRILEAL---GDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQGAN 76


>gi|322386226|ref|ZP_08059859.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
 gi|321269806|gb|EFX52733.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
          Length = 314

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
               +++AE   +S   +++ +  L  AGI + + +G+ GG+ +   
Sbjct: 34 GKVTATELAEKFEVSVRTIYRDVDSLSSAGIPIYSTQGKGGGIEIAED 81


>gi|228990464|ref|ZP_04150429.1| Transcriptional regulator, GntR [Bacillus pseudomycoides DSM
          12442]
 gi|228996566|ref|ZP_04156205.1| Transcriptional regulator, GntR [Bacillus mycoides Rock3-17]
 gi|229004216|ref|ZP_04162017.1| Transcriptional regulator, GntR [Bacillus mycoides Rock1-4]
 gi|228757077|gb|EEM06321.1| Transcriptional regulator, GntR [Bacillus mycoides Rock1-4]
 gi|228763198|gb|EEM12106.1| Transcriptional regulator, GntR [Bacillus mycoides Rock3-17]
 gi|228768990|gb|EEM17588.1| Transcriptional regulator, GntR [Bacillus pseudomycoides DSM
          12442]
          Length = 125

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + GIV T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELEREGIVVTRRGMG 71


>gi|227496552|ref|ZP_03926832.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833967|gb|EEH66350.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
          Length = 319

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 12/92 (13%)

Query: 3  LTKRTDYG-IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          ++ RTD   +R+++  A ++++   R + IA    +S+  + ++L+  V  G+V TV   
Sbjct: 1  MSARTDAAQLRLMVRIARMYHELGMRQTDIASELHVSQPRVSRLLKRAVAEGVVRTV--- 57

Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF 92
               +  P    T+L+  +A EE + +AEC 
Sbjct: 58 -----VTAPEGTYTVLE--EAVEERYGLAECI 82


>gi|254524438|ref|ZP_05136493.1| repressor [Stenotrophomonas sp. SKA14]
 gi|219722029|gb|EED40554.1| repressor [Stenotrophomonas sp. SKA14]
          Length = 322

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T       R+L   A+         +++AE   +    + + ++ L + G  V+   
Sbjct: 1  MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASA 55

Query: 59 GRRGGVRLC 67
          G  GG +L 
Sbjct: 56 GVGGGYQLG 64


>gi|191639668|ref|YP_001988834.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
          casei BL23]
 gi|190713970|emb|CAQ67976.1| Nicotinic acid mononucleotide adenyltransferase [Lactobacillus
          casei BL23]
 gi|327383779|gb|AEA55255.1| Transcriptional regulator, DeoR family [Lactobacillus casei LC2W]
 gi|327386972|gb|AEA58446.1| Transcriptional regulator, DeoR family [Lactobacillus casei
          BD-II]
          Length = 253

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +++    RI+ + +   +S   L K +  L + G ++ +R   GG  L +P ++
Sbjct: 14 LNDKGSVRIADLTKELDVSRETLRKDIAELGRQGKLQVIR---GGAVLNKPVNE 64


>gi|29832122|ref|NP_826756.1| IclR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29609240|dbj|BAC73291.1| putative IclR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 263

 Score = 36.9 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           A   D P R++++A+   +    ++ +LQ LV  G V T
Sbjct: 26 LAARGDRPARLTELADELDVPRSSMYALLQTLVTRGWVRT 65


>gi|284990922|ref|YP_003409476.1| IclR family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284064167|gb|ADB75105.1| transcriptional regulator, IclR family [Geodermatophilus obscurus
          DSM 43160]
          Length = 255

 Score = 36.9 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + VL   A  +    +++++A  C IS+    ++L  L     V    G  G   L   
Sbjct: 24 ALVVLQALA-EDGGAVQLAELARRCGISKPTAHRVLAGLRALAWVRAHEG--GRYSLGPQ 80

Query: 70 A 70
          A
Sbjct: 81 A 81


>gi|125717832|ref|YP_001034965.1| biotin--protein ligase [Streptococcus sanguinis SK36]
 gi|125497749|gb|ABN44415.1| Biotin--[acetyl-CoA-carboxylase] ligase, putative [Streptococcus
          sanguinis SK36]
          Length = 311

 Score = 36.9 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQTDDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|83720436|ref|YP_443377.1| transcriptional regulator [Burkholderia thailandensis E264]
 gi|83654261|gb|ABC38324.1| transcriptional regulator, putative [Burkholderia thailandensis
           E264]
          Length = 306

 Score = 36.9 bits (85), Expect = 1.00,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +T     G+ VL   A  +D P    ++AE   I +  + +I   LV AG +
Sbjct: 52  ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 101


>gi|302561031|ref|ZP_07313373.1| transcriptional regulator [Streptomyces griseoflavus Tu4000]
 gi|302478649|gb|EFL41742.1| transcriptional regulator [Streptomyces griseoflavus Tu4000]
          Length = 328

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +  Q L +AG+ V   RGR GG RL
Sbjct: 14 MVLLLQSRPSMTAAELASELEVSERTVTRDAQALSEAGVPVYADRGRIGGYRL 66


>gi|297159347|gb|ADI09059.1| ArsR family transcriptional regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 378

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+ +  A     P+   ++AE C I+   + + +  + KAG++ T R  RG   L
Sbjct: 307 MRMCLSLAR---GPHTTGELAEWCGITPPEVSRHIAVMKKAGLLTTRR--RGRYVL 357


>gi|283834223|ref|ZP_06353964.1| transcriptional regulator, GntR family [Citrobacter youngae ATCC
          29220]
 gi|291070377|gb|EFE08486.1| transcriptional regulator, GntR family [Citrobacter youngae ATCC
          29220]
          Length = 475

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+ +  P    ++A    +S   +   +  L + G +E+  G  
Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAAVLEVSRTTVASAMAQLREEGYLESRHGSG 87


>gi|307273345|ref|ZP_07554590.1| DRTGG domain protein [Enterococcus faecalis TX0855]
 gi|306509872|gb|EFM78897.1| DRTGG domain protein [Enterococcus faecalis TX0855]
          Length = 144

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA++  +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVRIIEGDV 85


>gi|190573593|ref|YP_001971438.1| putative DeoR family transcriptional regulator [Stenotrophomonas
          maltophilia K279a]
 gi|190011515|emb|CAQ45133.1| putative DeoR-family transcriptional regulator [Stenotrophomonas
          maltophilia K279a]
          Length = 322

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T       R+L   A+         +++AE   +    + + ++ L + G  V+   
Sbjct: 1  MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASS 55

Query: 59 GRRGGVRLC 67
          G  GG +L 
Sbjct: 56 GVGGGYQLG 64


>gi|153807914|ref|ZP_01960582.1| hypothetical protein BACCAC_02200 [Bacteroides caccae ATCC 43185]
 gi|149129523|gb|EDM20737.1| hypothetical protein BACCAC_02200 [Bacteroides caccae ATCC 43185]
          Length = 331

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 REGDSLPSINQLSAQYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|325662660|ref|ZP_08151260.1| hypothetical protein HMPREF0490_02000 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471157|gb|EGC74383.1| hypothetical protein HMPREF0490_02000 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 287

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           R+L Y   H   P  I +++E   +S  +L +I +
Sbjct: 189 RILTYINQHIQNPLTIKELSENFYLSPSYLCRIFK 223


>gi|307596090|ref|YP_003902407.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM
          14429]
 gi|307551291|gb|ADN51356.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM
          14429]
          Length = 249

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          T Y I+   Y A+  + P     +A    I    ++ +L  L + G VE
Sbjct: 17 TSYDIKA--YIALVENGPLTARDVAMKANIPSSKVYSVLHKLYRLGYVE 63


>gi|253577040|ref|ZP_04854362.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843534|gb|EES71560.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 319

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC---------RP 69
           N       Q+AE   +SE  + + ++ L  AGI V   RG RGG  L            
Sbjct: 14 QNRGKMSSRQLAELLEVSERTIVRDIEALSAAGIPVYAERGSRGGWVLADSYRTNLTGMR 73

Query: 70 ADQI 73
           ++I
Sbjct: 74 PEEI 77


>gi|225862626|ref|YP_002748004.1| hypothetical protein BCA_0686 [Bacillus cereus 03BB102]
 gi|225790965|gb|ACO31182.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 317

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVRRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|149198729|ref|ZP_01875772.1| transcriptional regulator, IclR family protein [Lentisphaera
          araneosa HTCC2155]
 gi|149138165|gb|EDM26575.1| transcriptional regulator, IclR family protein [Lentisphaera
          araneosa HTCC2155]
          Length = 259

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +RV+   A +      +S+I++A  I +   F+I   +   G +E
Sbjct: 19 ALRVMELLADNPKG-LTMSEISDALEIPKNSAFRITATMEHRGFLE 63


>gi|118469865|ref|YP_885744.1| DeoR family transcriptional regulator [Mycobacterium smegmatis
          str. MC2 155]
 gi|118171152|gb|ABK72048.1| DeoR-family protein transcriptional regulator [Mycobacterium
          smegmatis str. MC2 155]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RV+    +          ++AE   ++   + + ++ L + G  V   +G+ GG +L 
Sbjct: 10 RVVQLLGLLQSRRVWTGEELAERLGVTGRSVRRDIERLRELGYPVHASKGQGGGYQLG 67


>gi|150389109|ref|YP_001319158.1| GntR family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149948971|gb|ABR47499.1| transcriptional regulator, GntR family [Alkaliphilus
          metalliredigens QYMF]
          Length = 223

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 1  MHL-------TKRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49
          M +       T R DY +R+L    +   +        +++A    +S   + + L  L 
Sbjct: 1  MQIAERLAKETTR-DYALRILKYNIIMLELKPGSIVSENELATEIGVSRTPVREALIELS 59

Query: 50 KAGIVE 55
          K  IVE
Sbjct: 60 KTQIVE 65


>gi|116623501|ref|YP_825657.1| ArsR family transcriptional regulator [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116226663|gb|ABJ85372.1| transcriptional regulator, ArsR family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 113

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 15/72 (20%)

Query: 1  MHLTKR--TDYG-----------IRVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
          M  T    T Y            +R++ +  + H +    + +I E   +S   L   L 
Sbjct: 1  MKKTSEQVTRYADMFAAMGTESRLRIMQLLLSAHPEGMV-VGEIQEELGLSASNLSHHLD 59

Query: 47 PLVKAGIVETVR 58
           L   G+V   R
Sbjct: 60 KLKNEGLVRVTR 71


>gi|332668890|ref|YP_004451898.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484]
 gi|332337928|gb|AEE44511.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484]
          Length = 121

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RT   I  ++           ++ IAEA       + + L  L    +V + R
Sbjct: 35 RTRLAILAMLD-----GTEMPVNAIAEALGRPAPAVSQHLARLRAGRLVTSRR 82


>gi|315150459|gb|EFT94475.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0012]
          Length = 260

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|310658055|ref|YP_003935776.1| sigma-54-dependent transcriptional regulator [Clostridium
           sticklandii DSM 519]
 gi|308824833|emb|CBH20871.1| putative sigma-54-dependent transcriptional regulator [Clostridium
           sticklandii]
          Length = 668

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +L+  A   + P + ++           L KIL  L   G V + +GR G     +  ++
Sbjct: 615 MLIRLAEKENVPVKEAE-----------LKKILTNLKNQGFVNSGKGRAGTYITQKGLEE 663

Query: 73  IT 74
           ++
Sbjct: 664 LS 665


>gi|299822666|ref|ZP_07054552.1| conserved hypothetical protein [Listeria grayi DSM 20601]
 gi|299816195|gb|EFI83433.1| conserved hypothetical protein [Listeria grayi DSM 20601]
          Length = 196

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 1   MHLTKRTDYGIRVLMYCAI---HNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIV- 54
           M L        RV+ Y A+   +N+    +    IA++  +S + + +  + L K GI+ 
Sbjct: 33  MKLNTNQR---RVIEYLALIAGNNNGVCHVYRQTIADSLQVSPVTVSRAFRALKKLGIIK 89

Query: 55  ------ETVRGRRG 62
                 ++V G RG
Sbjct: 90  VQATAKKSVNGGRG 103


>gi|229179587|ref|ZP_04306939.1| transcriptional regulator [Bacillus cereus 172560W]
 gi|228603881|gb|EEK61350.1| transcriptional regulator [Bacillus cereus 172560W]
          Length = 219

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G+VE++ G
Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71


>gi|284033429|ref|YP_003383360.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283812722|gb|ADB34561.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 320

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +AE   +S   L + +  L + G  V+   G  GG  L 
Sbjct: 26 LAERLGVSARTLRRDIDRLRELGYPVDANPGVDGGYALA 64


>gi|89069250|ref|ZP_01156617.1| transcriptional regulator, GntR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89045248|gb|EAR51315.1| transcriptional regulator, GntR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 225

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 5   KRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            + DY      R+++   +        ++ A    +S   + + +  L + G+VE +R R
Sbjct: 10  TQADYAYGELKRMMLDGTLQFGAQMLEAEAATRLGVSRTPVREAMIRLQQEGMVE-LRPR 68

Query: 61  RGGVRLCRPADQIT-ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            G   L   AD +  I DV+ A E      E  A  + D   +        L  A++   
Sbjct: 69  HGMRVLPVSADDMRDIYDVLTALEGKAA--ELVAQKRPDEAALAG------LWDAVDQME 120

Query: 120 DVLTQYSIE 128
             L    ++
Sbjct: 121 RALAAEDLD 129


>gi|297567066|ref|YP_003686038.1| Helix-turn-helix type 11 domain-containing protein [Meiothermus
          silvanus DSM 9946]
 gi|296851515|gb|ADH64530.1| Helix-turn-helix type 11 domain protein [Meiothermus silvanus DSM
          9946]
          Length = 324

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                Q+AE   +SE  + + ++ L  AG+ V   RG RGG RL
Sbjct: 17 GRVTSRQLAERLEVSERTIHRDMEALTAAGVPVYAERGSRGGWRL 61


>gi|302877060|ref|YP_003845693.1| regulatory protein DeoR [Clostridium cellulovorans 743B]
 gi|307687751|ref|ZP_07630197.1| regulatory protein DeoR [Clostridium cellulovorans 743B]
 gi|302579917|gb|ADL53929.1| regulatory protein DeoR [Clostridium cellulovorans 743B]
          Length = 304

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   I N       ++AE   +S   + + +  L  AGI +    G+ GG +L
Sbjct: 9  ILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQL 61


>gi|240103565|ref|YP_002959874.1| hypothetical protein TGAM_1508 [Thermococcus gammatolerans EJ3]
 gi|239911119|gb|ACS34010.1| Hypothetical protein TGAM_1508 [Thermococcus gammatolerans EJ3]
          Length = 202

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +Y  + +    RI +IA    ++  + +++++ LV+ G V  V GR
Sbjct: 13 IYSVMFDREGLRIPEIARITGLNYTYTYQVVRSLVREGYVTVVGGR 58


>gi|190895398|ref|YP_001985690.1| transcriptional regulator GntR family [Rhizobium etli CIAT 652]
 gi|190699343|gb|ACE93427.1| putative transcriptional regulator protein, GntR family
          [Rhizobium etli CIAT 652]
          Length = 240

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A    +S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 37 DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84


>gi|329947526|ref|ZP_08294718.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 170 str. F0386]
 gi|328524216|gb|EGF51289.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 170 str. F0386]
          Length = 157

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          TDY  R L   +   D   RIS++A    +++    +++  L   G+V 
Sbjct: 49 TDY--RALALLSEAPDRELRISELAIRIGLNQSSTTRLVGRLELKGLVT 95


>gi|320156556|ref|YP_004188935.1| glycerol-3-phosphate regulon repressor, DeoR family [Vibrio
          vulnificus MO6-24/O]
 gi|319931868|gb|ADV86732.1| glycerol-3-phosphate regulon repressor, DeoR family [Vibrio
          vulnificus MO6-24/O]
          Length = 253

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R     ++L Y           + ++E   +S   + K +  L   G+V   R  
Sbjct: 1  MSLSTRQK---QILAYL-QQTHGVLSSALLSERFNVSVQTIRKDMNDLSDKGMV---RRV 53

Query: 61 RGGVRL 66
           GG+ L
Sbjct: 54 HGGISL 59


>gi|293605111|ref|ZP_06687503.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292816514|gb|EFF75603.1| IclR family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 246

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RVL   A    +D P  I+ +AE   +++  L++ +  L + G V    G  G
Sbjct: 12 RVLYVLATLARHDGPLTIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYG 64


>gi|297566010|ref|YP_003684982.1| IclR family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296850459|gb|ADH63474.1| transcriptional regulator, IclR family [Meiothermus silvanus DSM
          9946]
          Length = 835

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+   +  +RVL Y A H +      ++A     S    + +L  LV  G  E   G  
Sbjct: 6  RLST-VEAALRVLAYLAAHPEG-LEAREVARMLGKSLSTAYALLASLVAEGFAE-REGSS 62

Query: 62 GGVRLCRPA 70
             R+ + A
Sbjct: 63 --YRVSKAA 69


>gi|226307112|ref|YP_002767072.1| DeoR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226186229|dbj|BAH34333.1| putative DeoR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 321

 Score = 36.9 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R L   ++   +     +++A    +++  + + +  L   G  V++  G+ GG RL
Sbjct: 8  RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRALGYPVDSTSGKYGGYRL 64


>gi|315172227|gb|EFU16244.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX1346]
          Length = 260

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|311066999|ref|YP_003971922.1| hypothetical protein BATR1942_00155 [Bacillus atrophaeus 1942]
 gi|310867516|gb|ADP30991.1| hypothetical protein BATR1942_00155 [Bacillus atrophaeus 1942]
          Length = 219

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G+VE++ G
Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71


>gi|302544371|ref|ZP_07296713.1| putative ArsR-family transcriptional regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461989|gb|EFL25082.1| putative ArsR-family transcriptional regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 325

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+    A     P+   ++AEA  I+   + + +  L KAG++ T R  RG   L
Sbjct: 254 MRICRTLAR---GPHTTGELAEAYAITPPEVSRHIAVLKKAGLLHTRR--RGRYVL 304


>gi|327191407|gb|EGE58432.1| transcriptional regulator, histidine utilization repressor, GntR
           family [Rhizobium etli CNPAF512]
          Length = 256

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
            +A    +S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 53  DLATQYDVSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 100


>gi|315029306|gb|EFT41238.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX4000]
          Length = 260

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|317128134|ref|YP_004094416.1| GntR family transcriptional regulator [Bacillus cellulosilyticus
          DSM 2522]
 gi|315473082|gb|ADU29685.1| transcriptional regulator, GntR family [Bacillus cellulosilyticus
          DSM 2522]
          Length = 131

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            N+    + +++    I+   + K  Q L + G++ T+RGR 
Sbjct: 31 QPNEKLPSVRELSSQMVINPNTVSKAYQELERQGVIVTIRGRG 73


>gi|282898392|ref|ZP_06306383.1| RNA binding S1 [Raphidiopsis brookii D9]
 gi|281196923|gb|EFA71828.1| RNA binding S1 [Raphidiopsis brookii D9]
          Length = 718

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+H +    + +IA    +    + +I + L K GI +          L     + T+ D
Sbjct: 562 AVHPESYLLVEKIAGDLQVPLNQVTQIAERLKKTGIKK---------YLTDAIGEPTLRD 612

Query: 78  VVKATEES 85
           +++  E+ 
Sbjct: 613 ILRELEKP 620


>gi|228912354|ref|ZP_04076047.1| transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|228847276|gb|EEM92237.1| transcriptional regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G+VE++ G
Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71


>gi|297199584|ref|ZP_06916981.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|197713488|gb|EDY57522.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 260

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 17 VELLELLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 62


>gi|148380138|ref|YP_001254679.1| GntR family transcriptional regulator/aminotransferase, classes I
          and II [Clostridium botulinum A str. ATCC 3502]
 gi|153934045|ref|YP_001384436.1| GntR family transcriptional regulator [Clostridium botulinum A
          str. ATCC 19397]
 gi|153935225|ref|YP_001387972.1| GntR family transcriptional regulator [Clostridium botulinum A
          str. Hall]
 gi|148289622|emb|CAL83725.1| GntR family regulatory protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152930089|gb|ABS35589.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum A str. ATCC 19397]
 gi|152931139|gb|ABS36638.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum A str. Hall]
          Length = 497

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|29831226|ref|NP_825860.1| transcription regulator ArsR [Streptomyces avermitilis MA-4680]
 gi|29608341|dbj|BAC72395.1| putative ArsR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 374

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+  Y A     P    ++A A  +S   + + L  L KAG++ T R  RG   L
Sbjct: 303 LRLCRYIARA---PYTTGELAHAHDLSAPEVSRHLTVLKKAGLLTTRR--RGRYVL 353


>gi|53718904|ref|YP_107890.1| IclR family transcriptional regulatory protein [Burkholderia
          pseudomallei K96243]
 gi|76808634|ref|YP_332906.1| IclR family transcriptional regulator [Burkholderia pseudomallei
          1710b]
 gi|126439852|ref|YP_001058409.1| IclR family transcriptional regulator [Burkholderia pseudomallei
          668]
 gi|126453037|ref|YP_001065643.1| IclR family transcriptional regulator [Burkholderia pseudomallei
          1106a]
 gi|134283851|ref|ZP_01770548.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          305]
 gi|217423787|ref|ZP_03455288.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          576]
 gi|237811652|ref|YP_002896103.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          MSHR346]
 gi|242314650|ref|ZP_04813666.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106b]
 gi|254180300|ref|ZP_04886899.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1655]
 gi|254198066|ref|ZP_04904488.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          S13]
 gi|254258398|ref|ZP_04949452.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1710a]
 gi|52209318|emb|CAH35263.1| putative IclR-family transcriptional regulatory protein
          [Burkholderia pseudomallei K96243]
 gi|76578087|gb|ABA47562.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1710b]
 gi|126219345|gb|ABN82851.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          668]
 gi|126226679|gb|ABN90219.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106a]
 gi|134244839|gb|EBA44936.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          305]
 gi|169654807|gb|EDS87500.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          S13]
 gi|184210840|gb|EDU07883.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1655]
 gi|217393645|gb|EEC33666.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          576]
 gi|237502988|gb|ACQ95306.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          MSHR346]
 gi|242137889|gb|EES24291.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106b]
 gi|254217087|gb|EET06471.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1710a]
          Length = 275

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A  +D P    ++AE   I +  + +I   LV AG +
Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 70


>gi|71153381|sp|Q93PU6|TTGV_PSEPU RecName: Full=HTH-type transcriptional regulator ttgV; AltName:
          Full=Toluene tolerance pump ttgGHI operon repressor
 gi|14582623|gb|AAK69562.1|AF299253_2 putative regulatory protein TtgV [Pseudomonas putida]
          Length = 259

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H  +   ++ IA+   +    + +I+  L +  +VE + G  GG RL 
Sbjct: 23 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 75


>gi|172058224|ref|YP_001814684.1| regulatory protein GntR HTH [Exiguobacterium sibiricum 255-15]
 gi|171990745|gb|ACB61667.1| regulatory protein GntR HTH [Exiguobacterium sibiricum 255-15]
          Length = 172

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +  D      ++AE   IS   + + L+ L   GI+ET  G  G   L R 
Sbjct: 25 VPGDRIPSERELAERLSISRPSVREALRTLAYLGIIETRHG-GGSFLLNRD 74


>gi|317123900|ref|YP_004098012.1| MarR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587988|gb|ADU47285.1| regulatory protein MarR [Intrasporangium calvum DSM 43043]
          Length = 148

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 1  MHLTKRTDY------GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M +++R  +              A   D P   S++AE   IS   + +    LV+AG V
Sbjct: 26 MRISRRVRFESDQELAPHHFSVLARLEDAPRTNSELAEIERISAPSMKRTTTHLVEAGYV 85


>gi|315180082|gb|ADT86996.1| transcriptional regulator of sugar metabolism [Vibrio furnissii
          NCTC 11218]
          Length = 252

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R     ++L Y           + ++E   +S   + K +  L   G+V   R  
Sbjct: 1  MSLSTRQK---QILAYL-QQAHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRV 53

Query: 61 RGGVRL 66
           GG+ L
Sbjct: 54 HGGISL 59


>gi|313618822|gb|EFR90709.1| Rrf2 family protein [Listeria innocua FSL S4-378]
          Length = 51

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSS 136
             +  +  NA  DVL Q ++  L+++ + 
Sbjct: 12  RELWTRMRNAVRDVLDQTTLSDLLKHSTD 40


>gi|260768373|ref|ZP_05877307.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          furnissii CIP 102972]
 gi|260616403|gb|EEX41588.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          furnissii CIP 102972]
          Length = 252

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L+ R     ++L Y           + ++E   +S   + K +  L   G+V   R  
Sbjct: 1  MSLSTRQK---QILAYL-QQAHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRV 53

Query: 61 RGGVRL 66
           GG+ L
Sbjct: 54 HGGISL 59


>gi|163839361|ref|YP_001623766.1| GntR family transcriptional regulator [Renibacterium salmoninarum
          ATCC 33209]
 gi|162952837|gb|ABY22352.1| transcriptional regulator, GntR family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 257

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +AE   +S   L + L  L ++G +   RGR GG
Sbjct: 58 RDLAERLGVSRSTLREALSALQESGHLVIRRGRYGG 93


>gi|30022287|ref|NP_833918.1| manganese transport transcriptional regulator [Bacillus cereus
          ATCC 14579]
 gi|296504691|ref|YP_003666391.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis BMB171]
 gi|38604745|sp|Q818P5|MNTR_BACCR RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|29897844|gb|AAP11119.1| Manganese transport transcription regulator [Bacillus cereus ATCC
          14579]
 gi|296325743|gb|ADH08671.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis BMB171]
          Length = 142

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|19553477|ref|NP_601479.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62391120|ref|YP_226522.1| ArsR family regulatory protein [Corynebacterium glutamicum ATCC
           13032]
 gi|145296233|ref|YP_001139054.1| hypothetical protein cgR_2150 [Corynebacterium glutamicum R]
 gi|21325050|dbj|BAB99672.1| Predicted transcriptional regulators [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326459|emb|CAF20621.1| Bacterial regulatory proteins, ArsR family [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846153|dbj|BAF55152.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 123

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           +R+ +  A++ + P+ + ++ +    S+  + + L+ L  AGIV+  R GR+    L  P
Sbjct: 47  LRIEIILALN-ERPHYVHELVKLVKSSQPLVSQHLKVLKTAGIVDAERQGRQMTYSLAEP 105


>gi|326331915|ref|ZP_08198201.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
 gi|325950228|gb|EGD42282.1| DeoR-family transcriptional regulator [Nocardioidaceae bacterium
          Broad-1]
          Length = 317

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L   ++   +     ++++    +SE  L + ++ L   G  V+  RG  GG +L
Sbjct: 6  RMLQLLSLLQTHRFWPGTELSVRLEVSERTLRRDIERLRDLGYDVDATRGVAGGYQL 62


>gi|290962383|ref|YP_003493565.1| hypothetical protein SCAB_80781 [Streptomyces scabiei 87.22]
 gi|260651909|emb|CBG75039.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 115

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRR 61
             +  AI  D   R+  IA  C ++E  + KI+  L ++G +  T +GR 
Sbjct: 17 HARVLAAIAEDRTVRVRDIAARCRLTERAVQKIIADLEQSGFLSHTRQGRG 67


>gi|257139626|ref|ZP_05587888.1| transcriptional regulator, putative [Burkholderia thailandensis
          E264]
          Length = 275

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A  +D P    ++AE   I +  + +I   LV AG +
Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 70


>gi|256619140|ref|ZP_05475986.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 4200]
 gi|300860601|ref|ZP_07106688.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TUSoD Ef11]
 gi|307274881|ref|ZP_07556044.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX2134]
 gi|256598667|gb|EEU17843.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 4200]
 gi|300849640|gb|EFK77390.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TUSoD Ef11]
 gi|306508329|gb|EFM77436.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX2134]
 gi|315034048|gb|EFT45980.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0017]
          Length = 260

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|318060620|ref|ZP_07979343.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318077588|ref|ZP_07984920.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actF]
 gi|333022526|ref|ZP_08450590.1| putative GntR family transcriptional regulator [Streptomyces sp.
          Tu6071]
 gi|332742378|gb|EGJ72819.1| putative GntR family transcriptional regulator [Streptomyces sp.
          Tu6071]
          Length = 140

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++    +R L + A   D     +Q+     I+   +FK  + L + G+V++ +G  
Sbjct: 16 QIAQQVRQALR-LGHLA-PGDKLPTAAQVVATTAINPNTVFKAYRELEREGLVDSRQGVG 73


>gi|312126430|ref|YP_003991304.1| GntR family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776449|gb|ADQ05935.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 121

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +    + +++    I+     ++ Q L + G+ +T RG  
Sbjct: 30 GEKLPSVREMSRMFNINPNTAQRVFQELEREGLTKTERGIG 70


>gi|307595847|ref|YP_003902164.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM 14429]
 gi|307551048|gb|ADN51113.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM 14429]
          Length = 157

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           IRVL Y         + ++IA    + +  + +I++ L   G++   R
Sbjct: 84  IRVLSYLLSRGGDAYQ-AEIARELGLPKSTVSRIIRRLHDRGLITVRR 130


>gi|259417331|ref|ZP_05741250.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B]
 gi|259346237|gb|EEW58051.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B]
          Length = 339

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45
           +R +       ++P   ++IAE   IS   L ++ 
Sbjct: 231 VRAMAIMEEFIEHPLPTAEIAERAGISVRHLERLF 265


>gi|331697542|ref|YP_004333781.1| IclR family transcriptional regulator [Pseudonocardia
          dioxanivorans CB1190]
 gi|326952231|gb|AEA25928.1| transcriptional regulator, IclR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 256

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +R+L   A     P     + E   ++    + IL  L +AG     RG R G  L 
Sbjct: 11 AVRLLERIAREWPDPVPTGTLIEELGLNRSTCYNILGTLQRAGW-AATRGDRAGWWLG 67


>gi|296164650|ref|ZP_06847216.1| ArsR family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295899958|gb|EFG79398.1| ArsR family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 107

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      + +I+    +S+  +   L+ L  AG++   R
Sbjct: 37 LRMLSLIASHPGGEACVCEISATFDLSQPTISHHLKLLRSAGLLGCER 84


>gi|291302510|ref|YP_003513788.1| IclR family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290571730|gb|ADD44695.1| transcriptional regulator, IclR family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 263

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          VL   A         +++A A  I       +   L + G+V   R   GG  L     +
Sbjct: 24 VLRALAASGGRALSAAELATAADIPRSSAMNVCVALTQIGLV---RAVSGGFALGPGLTE 80

Query: 73 IT 74
          ++
Sbjct: 81 LS 82


>gi|227830319|ref|YP_002832099.1| TrmB family transcriptional regulator [Sulfolobus islandicus
           L.S.2.15]
 gi|227456767|gb|ACP35454.1| transcriptional regulator TrmB [Sulfolobus islandicus L.S.2.15]
          Length = 645

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A+ ++   +  ++A+A  IS+ +   +L+ L + G+VE V+
Sbjct: 477 ALPDEGGLKSQEVADALKISKQYAINVLKNLERKGVVEGVK 517


>gi|254518231|ref|ZP_05130287.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911980|gb|EEH97181.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 244

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 1  MHLTKRTDYGIRV---LMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAG 52
          M  +K+  Y + V   L       D P+         +A+   +S   L + L  L   G
Sbjct: 7  MKKSKKLRY-VEVYNTLFKMIKEEDLPDNYRLPSEPDLAKELGVSRTTLRQALSLLQDDG 65

Query: 53 IVETVRGRR 61
          +++ +RG+ 
Sbjct: 66 LIKNIRGKG 74


>gi|221195294|ref|ZP_03568350.1| iron-dependent transcriptional regulator [Atopobium rimae ATCC
          49626]
 gi|221185197|gb|EEE17588.1| iron-dependent transcriptional regulator [Atopobium rimae ATCC
          49626]
          Length = 142

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 3  LTKRT-DYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+K   DY +  +   ++    ND   R   IAE+  +S+  + K L  L + G+VE  R
Sbjct: 12 LSKAGEDY-LEAIYRISLDQPENDRSVRSVDIAESLDVSKASVNKALSLLKEQGMVEQSR 70

Query: 59 GRRGGVRLCRPADQITILDVVKA 81
             G V L    ++ T   V +A
Sbjct: 71 --YGRVTLTSDGEE-TARQVWRA 90


>gi|239618349|ref|YP_002941671.1| transcriptional regulator, GntR family [Kosmotoga olearia TBF
          19.5.1]
 gi|239507180|gb|ACR80667.1| transcriptional regulator, GntR family [Kosmotoga olearia TBF
          19.5.1]
          Length = 242

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            D      +I E   +S   + + L+ L + GI+E ++G+ 
Sbjct: 27 RGDQLPTEKEICEMFNVSRTTVRRALEELKREGIIERIKGKG 68


>gi|169797426|ref|YP_001715219.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184156651|ref|YP_001844990.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|213155760|ref|YP_002317805.1| transcriptional regulator, IclR family [Acinetobacter baumannii
           AB0057]
 gi|215484863|ref|YP_002327102.1| Pca operon regulatory protein [Acinetobacter baumannii AB307-0294]
 gi|239500950|ref|ZP_04660260.1| Pca operon regulatory protein [Acinetobacter baumannii AB900]
 gi|260556318|ref|ZP_05828537.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345133|ref|ZP_07225874.1| Pca operon regulatory protein [Acinetobacter baumannii AB056]
 gi|301510706|ref|ZP_07235943.1| Pca operon regulatory protein [Acinetobacter baumannii AB058]
 gi|301594966|ref|ZP_07239974.1| Pca operon regulatory protein [Acinetobacter baumannii AB059]
 gi|332854382|ref|ZP_08435334.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013150]
 gi|332867597|ref|ZP_08437745.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013113]
 gi|332873058|ref|ZP_08441015.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059]
 gi|169150353|emb|CAM88250.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183208245|gb|ACC55643.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193076164|gb|ABO10780.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213054920|gb|ACJ39822.1| transcriptional regulator, IclR family [Acinetobacter baumannii
           AB0057]
 gi|213985747|gb|ACJ56046.1| Pca operon regulatory protein [Acinetobacter baumannii AB307-0294]
 gi|260410373|gb|EEX03672.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506538|gb|ADX01992.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323516417|gb|ADX90798.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728058|gb|EGJ59449.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013150]
 gi|332733871|gb|EGJ65017.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6013113]
 gi|332738570|gb|EGJ69440.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059]
          Length = 257

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV A +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD V + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|162449397|ref|YP_001611764.1| ArsR family transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161159979|emb|CAN91284.1| transcriptional regulator, ArsR family [Sorangium cellulosum 'So ce
           56']
          Length = 145

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
           L+  T   I            P  + ++A+   IS+  + K L  L +AG++E  R GR+
Sbjct: 47  LSDATRRAI-----LVRLKTGPASVHELAQPFQISQQAISKHLATLERAGLIEKRRDGRQ 101


>gi|152968393|ref|YP_001364177.1| IclR family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151362910|gb|ABS05913.1| Transcriptional regulator IclR [Kineococcus radiotolerans
          SRS30216]
          Length = 254

 Score = 36.9 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +R+L + A     P   + +A +  +    ++++L  L   G V
Sbjct: 13 ALRILSFMAAQQG-PVAAATLARSLDLPRSSVYRLLAELAGQGFV 56


>gi|323698038|ref|ZP_08109950.1| ribonuclease BN [Desulfovibrio sp. ND132]
 gi|323457970|gb|EGB13835.1| ribonuclease BN [Desulfovibrio desulfuricans ND132]
          Length = 461

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 10  GIRVLMYCAI--HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            + +++  A   H   P   + +I++        +  + + L +AG   TV     G  +
Sbjct: 320 AVLMMVVLAKRFHEGAPLPSVEEISDGLMAPASLVSDLFRVLQQAGY--TVPAEVPGHEV 377

Query: 67  ---CRPADQITILDVVKAT--EESFFVAECFASH 95
               R    + +LDV++A   E    V   F   
Sbjct: 378 FAPARELTDVRVLDVIRAINMEGERRVFAEFDEK 411


>gi|284031485|ref|YP_003381416.1| GntR family transcriptional regulator with aminotransferase
          domain-containing protein [Kribbella flavida DSM 17836]
 gi|283810778|gb|ADB32617.1| transcriptional regulator, GntR family with aminotransferase
          domain protein [Kribbella flavida DSM 17836]
          Length = 464

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          G+R ++  +   +      ++ +   +    + +++  L   G+VET  G  
Sbjct: 13 GLRAVVQRSAPGEKLPSSRELVDRYRVGPGTVARVIAQLAAEGVVETRPGSG 64


>gi|260550503|ref|ZP_05824713.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406418|gb|EEW99900.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 257

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV A +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD V + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYVSRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|302877104|ref|YP_003845737.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
 gi|307687799|ref|ZP_07630245.1| transcriptional regulator, GntR family protein [Clostridium
          cellulovorans 743B]
 gi|302579961|gb|ADL53973.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
          Length = 244

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++++  +S   L + L  L   GIV+ +RG+ 
Sbjct: 42 ELSKSLGVSRSTLRQALALLQDDGIVKNIRGKG 74


>gi|253988656|ref|YP_003040012.1| regulatory protein, GntR [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211638020|emb|CAR66648.1| regulatory protein, gntr [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253780106|emb|CAQ83267.1| regulatory protein, gntr [Photorhabdus asymbiotica]
          Length = 250

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +++    +S + +   L  L    +++T RGR GG  +C+   +I
Sbjct: 43 ELSRLLGVSPVTVRDALNTLRTRQLIDTRRGRHGGSFVCQAPVEI 87


>gi|168213020|ref|ZP_02638645.1| transcriptional regulator, GntR family [Clostridium perfringens
          CPE str. F4969]
 gi|170715330|gb|EDT27512.1| transcriptional regulator, GntR family [Clostridium perfringens
          CPE str. F4969]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ VRG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNVRGKG 75


>gi|118465187|ref|YP_881256.1| ArsR family transcriptional regulator [Mycobacterium avium 104]
 gi|118166474|gb|ABK67371.1| transcriptional regulator, ArsR family protein [Mycobacterium avium
           104]
          Length = 143

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +   +   + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 66  VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 124

Query: 69  PADQITILDVVKATEES 85
               I +  V  A EE 
Sbjct: 125 HLAHIVVDAVAHAGEEP 141


>gi|113867403|ref|YP_725892.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113526179|emb|CAJ92524.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71
                  Q++E   +S   + ++ + L   G VE+ +G            G +L R  D
Sbjct: 28 GSRLPTGRQLSEQYGVSAAVIREVTEHLRSQGFVESRQGVGCTVRSRTGSAGFQLPREPD 87


>gi|29376199|ref|NP_815353.1| transcriptional repressor CodY [Enterococcus faecalis V583]
 gi|227518830|ref|ZP_03948879.1| transcriptional repressor CodY [Enterococcus faecalis TX0104]
 gi|227553447|ref|ZP_03983496.1| transcriptional repressor CodY [Enterococcus faecalis HH22]
 gi|229545745|ref|ZP_04434470.1| transcriptional repressor CodY [Enterococcus faecalis TX1322]
 gi|229549934|ref|ZP_04438659.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 29200]
 gi|255972717|ref|ZP_05423303.1| transcription pleiotropic repressor codY [Enterococcus faecalis T1]
 gi|255975769|ref|ZP_05426355.1| transcriptional repressor CodY [Enterococcus faecalis T2]
 gi|256762576|ref|ZP_05503156.1| transcription pleiotropic repressor codY [Enterococcus faecalis T3]
 gi|256853202|ref|ZP_05558572.1| transcriptional repressor CodY [Enterococcus faecalis T8]
 gi|256959056|ref|ZP_05563227.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           DS5]
 gi|256961851|ref|ZP_05566022.1| transcriptional repressor CodY [Enterococcus faecalis Merz96]
 gi|256965048|ref|ZP_05569219.1| transcriptional repressor CodY [Enterococcus faecalis HIP11704]
 gi|257079087|ref|ZP_05573448.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           JH1]
 gi|257082474|ref|ZP_05576835.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           E1Sol]
 gi|257085106|ref|ZP_05579467.1| transcriptional repressor CodY [Enterococcus faecalis Fly1]
 gi|257086667|ref|ZP_05581028.1| transcription pleiotropic repressor codY [Enterococcus faecalis D6]
 gi|257089961|ref|ZP_05584322.1| transcriptional pleiotropic repressor codY [Enterococcus faecalis
           CH188]
 gi|257416170|ref|ZP_05593164.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           AR01/DG]
 gi|257419372|ref|ZP_05596366.1| transcriptional repressor [Enterococcus faecalis T11]
 gi|257422534|ref|ZP_05599524.1| transcriptional repressor [Enterococcus faecalis X98]
 gi|293382916|ref|ZP_06628834.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis R712]
 gi|293389595|ref|ZP_06634052.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis S613]
 gi|294781642|ref|ZP_06746978.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis PC1.1]
 gi|307270941|ref|ZP_07552224.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX4248]
 gi|307273146|ref|ZP_07554392.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0855]
 gi|307277988|ref|ZP_07559072.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0860]
 gi|307289184|ref|ZP_07569140.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0109]
 gi|307291919|ref|ZP_07571788.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0411]
 gi|312899492|ref|ZP_07758822.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0470]
 gi|312903385|ref|ZP_07762565.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0635]
 gi|312907614|ref|ZP_07766605.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis DAPTO 512]
 gi|312910231|ref|ZP_07769078.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis DAPTO 516]
 gi|29343662|gb|AAO81423.1| transcriptional regulator CodY [Enterococcus faecalis V583]
 gi|227073743|gb|EEI11706.1| transcriptional repressor CodY [Enterococcus faecalis TX0104]
 gi|227177423|gb|EEI58395.1| transcriptional repressor CodY [Enterococcus faecalis HH22]
 gi|229304947|gb|EEN70943.1| transcriptional repressor CodY [Enterococcus faecalis ATCC 29200]
 gi|229309195|gb|EEN75182.1| transcriptional repressor CodY [Enterococcus faecalis TX1322]
 gi|255963735|gb|EET96211.1| transcription pleiotropic repressor codY [Enterococcus faecalis T1]
 gi|255968641|gb|EET99263.1| transcriptional repressor CodY [Enterococcus faecalis T2]
 gi|256683827|gb|EEU23522.1| transcription pleiotropic repressor codY [Enterococcus faecalis T3]
 gi|256711661|gb|EEU26699.1| transcriptional repressor CodY [Enterococcus faecalis T8]
 gi|256949552|gb|EEU66184.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           DS5]
 gi|256952347|gb|EEU68979.1| transcriptional repressor CodY [Enterococcus faecalis Merz96]
 gi|256955544|gb|EEU72176.1| transcriptional repressor CodY [Enterococcus faecalis HIP11704]
 gi|256987117|gb|EEU74419.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           JH1]
 gi|256990504|gb|EEU77806.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           E1Sol]
 gi|256993136|gb|EEU80438.1| transcriptional repressor CodY [Enterococcus faecalis Fly1]
 gi|256994697|gb|EEU81999.1| transcription pleiotropic repressor codY [Enterococcus faecalis D6]
 gi|256998773|gb|EEU85293.1| transcriptional pleiotropic repressor codY [Enterococcus faecalis
           CH188]
 gi|257157998|gb|EEU87958.1| transcription pleiotropic repressor codY [Enterococcus faecalis
           ARO1/DG]
 gi|257161200|gb|EEU91160.1| transcriptional repressor [Enterococcus faecalis T11]
 gi|257164358|gb|EEU94318.1| transcriptional repressor [Enterococcus faecalis X98]
 gi|291079581|gb|EFE16945.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis R712]
 gi|291081212|gb|EFE18175.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis S613]
 gi|294451338|gb|EFG19804.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis PC1.1]
 gi|295113042|emb|CBL31679.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus sp. 7L76]
 gi|306496917|gb|EFM66465.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0411]
 gi|306499893|gb|EFM69254.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0109]
 gi|306505385|gb|EFM74571.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0860]
 gi|306510131|gb|EFM79155.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0855]
 gi|306512439|gb|EFM81088.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX4248]
 gi|310626642|gb|EFQ09925.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis DAPTO 512]
 gi|310633261|gb|EFQ16544.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0635]
 gi|311289504|gb|EFQ68060.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis DAPTO 516]
 gi|311293362|gb|EFQ71918.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0470]
 gi|315027189|gb|EFT39121.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX2137]
 gi|315037056|gb|EFT48988.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0027]
 gi|315145124|gb|EFT89140.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX2141]
 gi|315147341|gb|EFT91357.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX4244]
 gi|315155675|gb|EFT99691.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0043]
 gi|315158154|gb|EFU02171.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0312]
 gi|315160542|gb|EFU04559.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0645]
 gi|315164093|gb|EFU08110.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX1302]
 gi|315168957|gb|EFU12974.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX1341]
 gi|315169809|gb|EFU13826.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX1342]
 gi|315575787|gb|EFU87978.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0309B]
 gi|315577629|gb|EFU89820.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0630]
 gi|315580439|gb|EFU92630.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0309A]
 gi|323480806|gb|ADX80245.1| GTP-sensing transcriptional repressor CodY [Enterococcus faecalis
           62]
 gi|327535210|gb|AEA94044.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis OG1RF]
 gi|329571619|gb|EGG53300.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX1467]
          Length = 260

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|16263024|ref|NP_435817.1| putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|14523678|gb|AAK65229.1| Transcriptional regulator, ArsR family [Sinorhizobium meliloti
           1021]
          Length = 115

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--R 68
           R+++ C +       + ++ E   + +  L + L  L  +GIV+T R G++   RL   +
Sbjct: 39  RLMIVCTLVQGE-YSVGELEEKVDVHQPHLSQHLTVLRGSGIVQTRRDGKQIFYRLTGEK 97

Query: 69  PADQI-TILDVVKATEE 84
            A  I  + D+    E+
Sbjct: 98  AARLIAALYDIFCVKED 114


>gi|15614452|ref|NP_242755.1| hypothetical protein BH1889 [Bacillus halodurans C-125]
 gi|10174507|dbj|BAB05608.1| BH1889 [Bacillus halodurans C-125]
          Length = 325

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          R++ +   I+      + ++AE   +S   + + LQ L + G+ + +  G  GG 
Sbjct: 6  RLMELMMVINRKRRFTVKELAEEFSVSSRTILRDLQELSELGVPLYSEVGPHGGY 60


>gi|226314242|ref|YP_002774138.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097192|dbj|BAH45634.1| putative transcriptional regulator [Brevibacillus brevis NBRC
          100599]
          Length = 318

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
           N       Q+AE   +SE  + + ++ L  +G+ V  +RG  GG  L  
Sbjct: 14 QNHGRMTSKQLAERLEVSERTVHRDMEALSSSGVPVYALRGADGGWALAE 63


>gi|170742565|ref|YP_001771220.1| ArsR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196839|gb|ACA18786.1| transcriptional regulator, ArsR family [Methylobacterium sp. 4-46]
          Length = 229

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70
           R  M  A+ +       ++A    I+       L  L +AG +V   +GR    RL  PA
Sbjct: 19  RAAMMQALMDGRALTAGELAGVAGITPQTASGHLAQLTRAGLLVVARQGRHRYHRLAGPA 78

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
                  V    E    VA   A      P      L
Sbjct: 79  -------VAHLIEGLMQVAGEAAPGPPTGPRDARLRL 108


>gi|332669370|ref|YP_004452378.1| helix-turn-helix type 11 domain-containing protein [Cellulomonas
          fimi ATCC 484]
 gi|332338408|gb|AEE44991.1| helix-turn-helix type 11 domain protein [Cellulomonas fimi ATCC
          484]
          Length = 318

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++A+   +++  +   +  L + G  V+ VRG  G  RL 
Sbjct: 25 ELADRLGVTDRTVRNDVARLRELGYPVDAVRGPGGRYRLG 64


>gi|311898470|dbj|BAJ30878.1| putative IclR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 273

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRG 59
          +++  D   R L   A   + P  + Q A    + +    ++L+ L + G V      R 
Sbjct: 1  MSQTVD---RALTILASLGEGPASLEQAAARIGVHKSTALRLLRTLQEHGFVHRQSDQRY 57

Query: 60 RRGG--VRLCRPADQ-ITILDV 78
          R GG    L   A + I I  V
Sbjct: 58 RLGGRLFALAHQALEGIDIRQV 79


>gi|309778334|ref|ZP_07673260.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308913900|gb|EFP59714.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 258

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +H +   R+  ++E   +SE  + K L  L   G++   R   GG  L R 
Sbjct: 14 LHANGKVRVKDLSERFSVSEDLIRKDLSALEAKGLL---RKAYGGAVLIRE 61


>gi|296163102|ref|ZP_06845874.1| transcriptional regulator, IclR family [Burkholderia sp. Ch1-1]
 gi|295886648|gb|EFG66494.1| transcriptional regulator, IclR family [Burkholderia sp. Ch1-1]
          Length = 259

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          L+            ++IAEA  I +  L K+++ L   G +  V   +G  RL 
Sbjct: 21 LLELLAQWGREMSHTEIAEALDIPKSSLTKLIRNLTDRGYLRFVAETKG-YRLG 73


>gi|226365145|ref|YP_002782928.1| DeoR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226243635|dbj|BAH53983.1| putative DeoR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 322

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +++A+   I+   + + ++ L   G  V+   G  GG +L   A+
Sbjct: 22 SGAELADRLGITPRTVRRDVEKLRDLGYPVDATVGVGGGYQLGAGAE 68


>gi|118468357|ref|YP_886943.1| ArsR family transcriptional regulator [Mycobacterium smegmatis
          str. MC2 155]
 gi|118169644|gb|ABK70540.1| ArsR-family protein transcriptional regulator [Mycobacterium
          smegmatis str. MC2 155]
          Length = 100

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          R+ +   +H      +  +AE    SE  + + L+ L + G V + R GR    RL
Sbjct: 28 RLEILLVLHRAPGIFVGDLAEVLGRSENAVSQALRVLRQQGWVSSTRVGRAVSYRL 83


>gi|284047277|ref|YP_003397617.1| ArsR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283951498|gb|ADB54242.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM
          14684]
          Length = 109

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
          +        S +A    IS   + K L  L  AG+V + R GR    RL      
Sbjct: 29 LSRQETVTASALAGELPISRQAVSKHLALLAGAGLVTSARAGRETLYRLTPDPLD 83


>gi|256377507|ref|YP_003101167.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921810|gb|ACU37321.1| transcriptional regulator, ArsR family [Actinosynnema mirum DSM
          43827]
          Length = 119

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        + ++  A  +S+  +   L+ L +AG+V++ R
Sbjct: 43 LRLLSMIAARAGGEVCVCELTPAFDLSQPTVSHHLKLLREAGLVDSER 90


>gi|254392521|ref|ZP_05007700.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294811155|ref|ZP_06769798.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326439727|ref|ZP_08214461.1| putative ArsR family transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706187|gb|EDY51999.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294323754|gb|EFG05397.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 331

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            L+  A H       +++     ++   + +    L KAG++ET R   GG
Sbjct: 266 ALLEAAAHTG---TTTELGRRVGVAPPVVSRHTAVLRKAGLLETRR--EGG 311


>gi|41408236|ref|NP_961072.1| hypothetical protein MAP2138 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396591|gb|AAS04455.1| hypothetical protein MAP_2138 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 141

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +   +   + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 64  VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 122

Query: 69  PADQITILDVVKATEES 85
               I +  V  A EE 
Sbjct: 123 HLAHIVVDAVAHAGEEP 139


>gi|242371961|ref|ZP_04817535.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350324|gb|EES41925.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 232

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          AI N      SQ+A+   +S+  + + +  L + G+ V    G+ GG ++     +I++
Sbjct: 13 AIQNSDKMTASQLAKEFNVSKRTILRDIDDLEEQGVKVYAQHGKLGGYQIKDAQSKISL 71


>gi|225388543|ref|ZP_03758267.1| hypothetical protein CLOSTASPAR_02279 [Clostridium asparagiforme
          DSM 15981]
 gi|225045388|gb|EEG55634.1| hypothetical protein CLOSTASPAR_02279 [Clostridium asparagiforme
          DSM 15981]
          Length = 326

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
            ++      Q+ E   +S   ++K +  L + G  ++ VR +  G RL + AD IT  +
Sbjct: 10 RESEGYLSGQQLCEQLGVSRTAVWKTIGQLKEEGYQIQAVRNK--GYRLVQGADVITRAE 67

Query: 78 VVKATE 83
          +V + +
Sbjct: 68 LVSSLD 73


>gi|153010652|ref|YP_001371866.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188]
 gi|151562540|gb|ABS16037.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188]
          Length = 116

 Score = 36.5 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +  +    + ++ EA  I +  L + L  L +AGIVET R
Sbjct: 39 RLMLACTL-AEREYSVGELEEALGIHQPTLSQQLGVLREAGIVETRR 84


>gi|228937238|ref|ZP_04099921.1| Transcriptional regulator, ArsR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822452|gb|EEM68398.1| Transcriptional regulator, ArsR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 368

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L       +       +A+ C +SE  + + LQ L KA +V +   + G   L +  
Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKAKLVTSK--KDGKYVLYKSQ 351

Query: 71  DQI 73
             I
Sbjct: 352 KNI 354


>gi|229106646|ref|ZP_04236887.1| Transcriptional regulator, ArsR [Bacillus cereus Rock3-28]
 gi|228676828|gb|EEL31433.1| Transcriptional regulator, ArsR [Bacillus cereus Rock3-28]
          Length = 368

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L       +       +A+ C +SE  + + LQ L KA +V +   + G   L +  
Sbjct: 300 LRIL------QERSLTTQSLAQICHLSEGAVSRHLQVLKKAKLVTSK--KDGKYVLYKSQ 351

Query: 71  DQI 73
             I
Sbjct: 352 KNI 354


>gi|218549887|ref|YP_002383678.1| hypothetical protein EFER_2572 [Escherichia fergusonii ATCC
          35469]
 gi|218357428|emb|CAQ90067.1| conserved hypothetical protein [Escherichia fergusonii ATCC
          35469]
          Length = 566

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRYAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|190410484|ref|YP_001965487.1| putative replication protein [Pediococcus acidilactici]
 gi|81176605|gb|ABB59533.1| putative replication protein [Pediococcus acidilactici]
          Length = 496

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|6690327|gb|AAF24084.1|AF117258_1 replication protein RepE [Staphylococcus aureus]
          Length = 151

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14 LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
          + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 31 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 90

Query: 67 C 67
           
Sbjct: 91 A 91


>gi|197103127|ref|YP_002128409.1| putative replication protein [Enterococcus faecium]
 gi|256959338|ref|ZP_05563509.1| replication protein RepE [Enterococcus faecalis DS5]
 gi|269124238|ref|YP_003305348.1| AM3 [Enterococcus faecalis]
 gi|2745827|gb|AAB94754.1| replication protein E [Cloning vector pIL252]
 gi|2773393|gb|AAB96788.1| replication protein E [Cloning vector pIL253]
 gi|3023047|gb|AAC38603.1| RepE [Enterococcus faecalis]
 gi|31873068|gb|AAP60031.1| RepE [Cloning vector pMSP3535]
 gi|32140770|gb|AAP70043.1| replication protein E [Shuttle vector pLEIItd+KR'']
 gi|32185268|gb|AAP73798.1| replication protein E [Shuttle vector pLEIItd+KR''deltaORF]
 gi|34558746|gb|AAQ75103.1| RepE [Shuttle vector pMSP3535-FT]
 gi|34558753|gb|AAQ75109.1| RepE [Shuttle vector pMSP3535-RT]
 gi|196158949|emb|CAP70025.1| putative replication protein [Enterococcus faecium]
 gi|222478236|gb|ACM62693.1| RepE [Shuttle vector pMSP3535H3]
 gi|256949834|gb|EEU66466.1| replication protein RepE [Enterococcus faecalis DS5]
 gi|267822502|gb|ACY79530.1| AM3 [Enterococcus faecalis]
          Length = 496

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|68537101|ref|YP_251806.1| ArsR family transcriptional regulator [Corynebacterium jeikeium
          K411]
 gi|260579446|ref|ZP_05847327.1| transcriptional regulator (ArsR family) [Corynebacterium jeikeium
          ATCC 43734]
 gi|68264700|emb|CAI38188.1| putative transcriptional regulator (ArsR family) [Corynebacterium
          jeikeium K411]
 gi|258602416|gb|EEW15712.1| transcriptional regulator (ArsR family) [Corynebacterium jeikeium
          ATCC 43734]
          Length = 115

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 7  TDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          T Y            +++L + A     P  ++Q+ +   +S+  +   L+ L  AG++ 
Sbjct: 29 TRYATLFKVLSDPARLQILSHLAAKGCEPISVNQLTDITGLSQPTVSHHLKRLTDAGLLR 88

Query: 56 TVR 58
            R
Sbjct: 89 KAR 91


>gi|305663532|ref|YP_003859820.1| hypothetical protein Igag_1128 [Ignisphaera aggregans DSM 17230]
 gi|304378101|gb|ADM27940.1| hypothetical protein Igag_1128 [Ignisphaera aggregans DSM 17230]
          Length = 128

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            +R LMY          I+QIA+   I+   L+++ + L KAG+ +T+        L R
Sbjct: 69  SVRTLMYLLYARAQGIPIAQIAKRLDIAHEQLYRLERLLAKAGLKDTI------YTLLR 121


>gi|108799433|ref|YP_639630.1| IclR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868546|ref|YP_938498.1| regulatory proteins, IclR [Mycobacterium sp. KMS]
 gi|108769852|gb|ABG08574.1| transcriptional regulator, IclR family [Mycobacterium sp. MCS]
 gi|119694635|gb|ABL91708.1| transcriptional regulator, IclR family [Mycobacterium sp. KMS]
          Length = 262

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  + VL   A          +IA A  + +  + +++  L   G VE V GR G  
Sbjct: 13 QSVDRALVVLEILAKAGQAGVT--EIAAALDVHKSTVSRLIAVLESRGYVEQVSGR-GKY 69

Query: 65 RLC 67
          RL 
Sbjct: 70 RLG 72


>gi|315649600|ref|ZP_07902685.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
 gi|315275073|gb|EFU38448.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
          Length = 318

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++Y  ++N+     S +AE   +S+  +++ +  +  AGI V + +G
Sbjct: 1  MKLER-----LISMIYMLLNNE-ILSASALAEKYNVSQRTIYRDIDAICAAGIPVVSYQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 VNGGY 59


>gi|312951575|ref|ZP_07770471.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0102]
 gi|310630541|gb|EFQ13824.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0102]
 gi|315152403|gb|EFT96419.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecalis TX0031]
          Length = 260

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            +  +       +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|308174246|ref|YP_003920951.1| DtxR family transcriptional regulator [Bacillus amyloliquefaciens
          DSM 7]
 gi|307607110|emb|CBI43481.1| transcriptional regulator (DtxR family) [Bacillus
          amyloliquefaciens DSM 7]
 gi|328554192|gb|AEB24684.1| manganese transport transcriptional regulator [Bacillus
          amyloliquefaciens TA208]
 gi|328912584|gb|AEB64180.1| transcriptional regulator (DtxR family) [Bacillus
          amyloliquefaciens LL3]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|229191387|ref|ZP_04318372.1| transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228592069|gb|EEK49903.1| transcriptional regulator [Bacillus cereus ATCC 10876]
          Length = 219

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G+VE++ G
Sbjct: 24 KAIVTLEVQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLVESIPG 71


>gi|222107135|ref|YP_002547926.1| transcriptional regulator GntR family [Agrobacterium vitis S4]
 gi|221738314|gb|ACM39210.1| transcriptional regulator GntR family [Agrobacterium vitis S4]
          Length = 250

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          H D       IAE+  IS + + K +  LV  G++   RG  
Sbjct: 38 HGDALPAERDIAESAGISRVTVRKAIDDLVAEGLLVRRRGAG 79


>gi|220927593|ref|YP_002504502.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium cellulolyticum
          H10]
 gi|219997921|gb|ACL74522.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium cellulolyticum
          H10]
          Length = 326

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD-----QIT 74
            D       I++A  +S   ++K +  L   G V     ++G  R  +  D     +I 
Sbjct: 11 EEDKYISGEDISKALNVSRTAVWKHINELRNDGYVIQSSSKKG-YRFLKAPDILDKREIN 69

Query: 75 I 75
          I
Sbjct: 70 I 70


>gi|297162522|gb|ADI12234.1| transcription regulator ArsR [Streptomyces bingchenggensis BCW-1]
          Length = 363

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 15  MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M    H    P   S++A+   + +  + + L+ L +AG++E+ R
Sbjct: 292 MELCRHLLGEPITTSELAKRLGLDDTQVSRTLRQLREAGLIESER 336


>gi|251798695|ref|YP_003013426.1| ArsR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546321|gb|ACT03340.1| transcriptional regulator, ArsR family [Paenibacillus sp. JDR-2]
          Length = 305

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 15/77 (19%)

Query: 1  MHLTKRTDYG-----------IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
          M +   TD+            +R+ ++        P  +  +A A  +S   +   ++ L
Sbjct: 1  MLIKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKL 60

Query: 49 VKAGIVET--VRGRRGG 63
           +AGI++T  VR ++GG
Sbjct: 61 EQAGIIQTKMVR-KQGG 76


>gi|167461852|ref|ZP_02326941.1| hypothetical protein Plarl_04730 [Paenibacillus larvae subsp.
          larvae BRL-230010]
 gi|322384718|ref|ZP_08058386.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321150417|gb|EFX43910.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 219

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G+VE++ G
Sbjct: 24 KAIVTLELQPEQRLNDKELAEKFGISRTPVREALKRLEDEGLVESIPG 71


>gi|254304387|ref|ZP_04971745.1| transcriptional regulator [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|148324579|gb|EDK89829.1| transcriptional regulator [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
          Length = 475

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K+++ L + G + +++G+ 
Sbjct: 32 ENDKFFSVRQISIKYEVNLNTVLKVIRMLEEEGYLYSIKGKG 73


>gi|46204549|ref|ZP_00209460.1| COG2378: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 345

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          ++A    +    + + +  L + G  V   RGR GG RL
Sbjct: 25 ELAARLGVDARTVRRDVDRLRELGYHVVATRGRVGGYRL 63


>gi|299536609|ref|ZP_07049921.1| putative transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
 gi|298728093|gb|EFI68656.1| putative transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
          Length = 319

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++       +IAE   I+   +++ +  L  +G+ +    G  GG  L
Sbjct: 14 LNSGRKITAKEIAEKLEINIRSVYRYINSLSASGVPIIAETGHHGGYTL 62


>gi|227486116|ref|ZP_03916432.1| transcriptional repressor [Anaerococcus lactolyticus ATCC 51172]
 gi|227235880|gb|EEI85895.1| transcriptional repressor [Anaerococcus lactolyticus ATCC 51172]
          Length = 100

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++       D P  +  IAE+  +S+  +   L+ L K  +V++ R
Sbjct: 29 MRIMYRL---FDGPVSVGDIAESLDMSQSAISHQLRNLKKNKLVKSER 73


>gi|194365137|ref|YP_002027747.1| Helix-turn-helix type 11 domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|194347941|gb|ACF51064.1| Helix-turn-helix type 11 domain protein [Stenotrophomonas
          maltophilia R551-3]
          Length = 322

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M  T       R+L   A+         +++AE   +    + + ++ L + G  V+   
Sbjct: 1  MRHTAH-----RLLRLIALLQARRQWSGAELAERMGVDRRSIRRDIERLRELGYPVQASA 55

Query: 59 GRRGGVRLC 67
          G  GG +L 
Sbjct: 56 GVGGGYQLG 64


>gi|194292466|ref|YP_002008373.1| DNA-binding protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226370|emb|CAQ72319.1| putative DNA-binding protein [Cupriavidus taiwanensis LMG 19424]
          Length = 86

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          ++VL         P  +++IA+   +    L ++L  L  AG+
Sbjct: 14 LQVLCQAGRDGGGPWSLARIAKRSGLPMSVLRRVLTQLQAAGL 56


>gi|218232690|ref|YP_002369007.1| manganese transport transcriptional regulator [Bacillus cereus
          B4264]
 gi|226704806|sp|B7HB75|MNTR_BACC4 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|218160647|gb|ACK60639.1| iron-dependent repressor family protein [Bacillus cereus B4264]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|116513072|ref|YP_811979.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|116108726|gb|ABJ73866.1| Transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
          Length = 145

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A      +  ++IAE   IS   + K L+ L +  ++++ R
Sbjct: 41 HILMILAA---EVSTNARIAEQLKISPAAVTKALKKLQEQELIKSSR 84


>gi|15643738|ref|NP_228786.1| hypothetical protein TM0978 [Thermotoga maritima MSB8]
 gi|222100574|ref|YP_002535142.1| SirA family protein [Thermotoga neapolitana DSM 4359]
 gi|4981517|gb|AAD36057.1|AE001760_7 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|221572964|gb|ACM23776.1| SirA family protein [Thermotoga neapolitana DSM 4359]
          Length = 184

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+ +T   + +LM      D     S++AE   I+    ++ L  +VKAGI++ V+   G
Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVVKTPEG 68


>gi|18313495|ref|NP_560162.1| hypothetical protein PAE2655 [Pyrobaculum aerophilum str. IM2]
 gi|18161034|gb|AAL64344.1| conserved within P. aerophilum [Pyrobaculum aerophilum str. IM2]
          Length = 186

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 13 VLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRL 66
          VLMY A            +  +     I E  + KIL  L  AG++E    GRR   RL
Sbjct: 11 VLMYMAWRHLICGFDYVTVKDMVSDLEIPERTVRKILAQLRDAGLLEMRTSGRRIKYRL 69


>gi|330470344|ref|YP_004408087.1| helix-turn-helix type 11 domain-containing protein
          [Verrucosispora maris AB-18-032]
 gi|328813315|gb|AEB47487.1| helix-turn-helix type 11 domain protein [Verrucosispora maris
          AB-18-032]
          Length = 327

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                  +++A    +SE  +++ +  L  AG+ V   RGR GG RL
Sbjct: 14 QAREAMTAAELARELEVSERTVYRDIVALSAAGVPVYADRGRAGGYRL 61


>gi|323698729|ref|ZP_08110641.1| regulatory protein ArsR [Desulfovibrio sp. ND132]
 gi|323458661|gb|EGB14526.1| regulatory protein ArsR [Desulfovibrio desulfuricans ND132]
          Length = 116

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +RVL     H +       +  A  + +  + + +  L   G V + R G+     L  P
Sbjct: 17 LRVLRLL-DHGERCVC--DLMAALDLPQSTVSRHMSFLRNGGWVSSRRKGKWVYYTLAEP 73

Query: 70 ADQIT--ILDVVK 80
           D I   +L++++
Sbjct: 74 QDAIQSEVLEILR 86


>gi|319793245|ref|YP_004154885.1| helix-turn-helix type 11 domain-containing protein [Variovorax
          paradoxus EPS]
 gi|315595708|gb|ADU36774.1| helix-turn-helix type 11 domain-containing protein [Variovorax
          paradoxus EPS]
          Length = 347

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1  MH--LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETV 57
          M   L+      IR+L             + +AE   I+E  L + +  L   G  V++ 
Sbjct: 1  MRPMLSASARL-IRLLSL--FQAQRAWTGAGLAERLEITERTLRRDVDRLRTLGYTVDST 57

Query: 58 RGRRGGVRLC 67
           G  GG RL 
Sbjct: 58 SGVAGGYRLG 67


>gi|259508495|ref|ZP_05751395.1| transcription repressor [Corynebacterium efficiens YS-314]
 gi|259163907|gb|EEW48461.1| transcription repressor [Corynebacterium efficiens YS-314]
          Length = 86

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + +L     H D     + +A+A  IS   +   ++ LV A +V 
Sbjct: 12 LSILYLITTHPDGRVSSNALAQALGISAPTVTHHMKKLVSARLVT 56


>gi|256829713|ref|YP_003158441.1| ArsR family transcriptional regulator [Desulfomicrobium baculatum
          DSM 4028]
 gi|256578889|gb|ACU90025.1| transcriptional regulator, ArsR family [Desulfomicrobium
          baculatum DSM 4028]
          Length = 109

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
          +R+LM+          ++QIAE   +S+  +   L+ L +A +V+   RG      + RP
Sbjct: 30 LRILMHV---GTGRLSVTQIAEELGLSQPLVSHHLKELKRALLVDVERRGPFIHYGISRP 86

Query: 70 ADQITILDVVKAT 82
               +LDV+++ 
Sbjct: 87 ----EVLDVLRSI 95


>gi|297582511|ref|YP_003698291.1| GntR family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297140968|gb|ADH97725.1| transcriptional regulator, GntR family [Bacillus selenitireducens
          MLS10]
          Length = 239

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +    P      ++E   IS + + + +  LV  G++   +GR 
Sbjct: 27 LQPGDPLPSERDLSETYGISRMTIRQAMTNLVNEGLLTRSKGRG 70


>gi|154686715|ref|YP_001421876.1| manganese transport transcriptional regulator [Bacillus
          amyloliquefaciens FZB42]
 gi|167011806|sp|A7Z6L9|MNTR_BACA2 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|154352566|gb|ABS74645.1| MntR [Bacillus amyloliquefaciens FZB42]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|21241147|ref|NP_640729.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106451|gb|AAM35265.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 296

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 52  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 105

Query: 63  -GVRL 66
            G  L
Sbjct: 106 RGYVL 110


>gi|150391546|ref|YP_001321595.1| helix-turn-helix, type 11 domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149951408|gb|ABR49936.1| Helix-turn-helix, type 11 domain protein [Alkaliphilus
          metalliredigens QYMF]
          Length = 115

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +       +++E   +S+  +++ L+ L  AGI V T +GRRGG+ L
Sbjct: 13 SKGRVTAKELSERFEVSQRTIYRDLESLSIAGIPVYTEKGRRGGISL 59


>gi|311064945|ref|YP_003971671.1| transcriptional regulator [Bifidobacterium bifidum PRL2010]
 gi|310867265|gb|ADP36634.1| Putative transcriptional regulator [Bifidobacterium bifidum
          PRL2010]
          Length = 201

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +R+L   +  +  P  + QIAE    S   +   L+ L KAG V       G
Sbjct: 37 LRILTVMS--DTKPVTVGQIAEQLGESAGTVSYHLKQLEKAGFVTQTPSPDG 86


>gi|310826092|ref|YP_003958449.1| hypothetical protein ELI_0470 [Eubacterium limosum KIST612]
 gi|308737826|gb|ADO35486.1| hypothetical protein ELI_0470 [Eubacterium limosum KIST612]
          Length = 122

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++       D    + ++A    ++   + K L  L + G+V   R
Sbjct: 21 LRIVSGLFAPGDKLPSVREMAAEASVNPNTMQKALSELERTGLVYAQR 68


>gi|296128170|ref|YP_003635420.1| regulatory protein ArsR [Cellulomonas flavigena DSM 20109]
 gi|296019985|gb|ADG73221.1| regulatory protein ArsR [Cellulomonas flavigena DSM 20109]
          Length = 225

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61
          VL    +  D     + +A +       + + +  LV AG+V T  RGRR
Sbjct: 16 VLRDLVLSADGTRTAADLARSTGHPPSSVAREVSRLVDAGLVRTTPRGRR 65


>gi|86749387|ref|YP_485883.1| IclR family transcriptional regulator [Rhodopseudomonas palustris
          HaA2]
 gi|86572415|gb|ABD06972.1| transcriptional regulator, IclR family [Rhodopseudomonas
          palustris HaA2]
          Length = 288

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          G+R L+        P  +S +A+AC +      +IL  L K+G V +
Sbjct: 50 GLR-LIEVFGAERRPMTLSDVAKACGLPRATARRILLTLQKSGFVTS 95


>gi|78060358|ref|YP_366933.1| GntR family transcriptional regulator [Burkholderia sp. 383]
 gi|77964908|gb|ABB06289.1| transcriptional regulator, GntR family [Burkholderia sp. 383]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +      ++AE   +S   + + +  L + G++E+ RG  
Sbjct: 72  GESLPPERELAEHFQVSRDTVRRAIDRLTRQGLIESRRGAG 112


>gi|24215607|ref|NP_713088.1| putative transcriptional regulator [Leptospira interrogans
          serovar Lai str. 56601]
 gi|24196760|gb|AAN50106.1| putative transcriptional regulator [Leptospira interrogans
          serovar Lai str. 56601]
          Length = 317

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          R+L +   +          +A+   +SE  + + ++ L  +GI V   RG +GG  L  
Sbjct: 5  RLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWELSE 63


>gi|11499852|ref|NP_071096.1| hypothetical protein AF2271 [Archaeoglobus fulgidus DSM 4304]
 gi|2648262|gb|AAB88995.1| predicted coding region AF_2271 [Archaeoglobus fulgidus DSM 4304]
          Length = 255

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P  I +I+E   IS   + + L+ L + G+VE
Sbjct: 23 SPKSIKEISELTGISPPLVSRHLKKLGELGLVE 55


>gi|163941963|ref|YP_001646847.1| manganese transport transcriptional regulator [Bacillus
          weihenstephanensis KBAB4]
 gi|226704808|sp|A9VGY7|MNTR_BACWK RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|163864160|gb|ABY45219.1| iron (metal) dependent repressor, DtxR family [Bacillus
          weihenstephanensis KBAB4]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|119387506|ref|YP_918540.1| phosphonates metabolism transcriptional regulator PhnF
          [Paracoccus denitrificans PD1222]
 gi|119378081|gb|ABL72844.1| transcriptional regulator, GntR family [Paracoccus denitrificans
          PD1222]
          Length = 243

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           D     + +A    ++   +   L  L +AG V + RG   GV +        + 
Sbjct: 26 GDKLPSEAVLAARFGVNRHTVRHALAALAEAGTVRSRRGA--GVFVAARPTDYPLG 79


>gi|332981873|ref|YP_004463314.1| biotin/acetyl-CoA-carboxylase ligase [Mahella australiensis 50-1
          BON]
 gi|332699551|gb|AEE96492.1| biotin/acetyl-CoA-carboxylase ligase [Mahella australiensis 50-1
          BON]
          Length = 330

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL-CRP- 69
          VL               I+ +  IS   ++K +  L + G V E+    R G +L   P 
Sbjct: 6  VLNMLLSSQGGFVSGEDISRSLNISRTAVWKYINELKEMGYVIESH--SRAGYKLIACPD 63

Query: 70 ---ADQITIL 76
              D+I++ 
Sbjct: 64 VLWPDEISLG 73


>gi|326941984|gb|AEA17880.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis serovar chinensis CT-43]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|317123977|ref|YP_004098089.1| IclR family transcriptional regulator [Intrasporangium calvum DSM
          43043]
 gi|315588065|gb|ADU47362.1| transcriptional regulator, IclR family [Intrasporangium calvum
          DSM 43043]
          Length = 290

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPA 70
          L+           +S++A++  +    + +I+Q LV  G V    + R       L    
Sbjct: 35 LLEAMADAGGIATLSELAKSTGLPMPTIHRIVQSLVAGGYVRKDVSHR-----YALG--P 87

Query: 71 DQITILDV 78
            I + +V
Sbjct: 88 RLIRLGEV 95


>gi|295106699|emb|CBL04242.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 140

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76
            D    +  +A    ++   + K+   L + G +++ R R+G   L    +P   I T  
Sbjct: 38  GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSGKPGVSISTTA 96

Query: 77  DVVKATEESFFVAECFA 93
           ++V       ++  CF 
Sbjct: 97  EIVT----QEYLKRCFE 109


>gi|293413700|ref|ZP_06656349.1| ybaE protein [Escherichia coli B185]
 gi|291433758|gb|EFF06731.1| ybaE protein [Escherichia coli B185]
          Length = 566

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQ 72
           +        +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + 
Sbjct: 16 LSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPES 75

Query: 73 ITILDVVKATE 83
          +    + KA E
Sbjct: 76 LRNAMMEKALE 86


>gi|251797532|ref|YP_003012263.1| transcriptional regulator, IclR family [Paenibacillus sp. JDR-2]
 gi|247545158|gb|ACT02177.1| transcriptional regulator, IclR family [Paenibacillus sp. JDR-2]
          Length = 257

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           I +L Y      +    +++I+    +    + +IL  L + G V
Sbjct: 7  AIHILDYLVPQGSEKEISVTEISRELDMPVQSVHRILASLSEHGFV 52


>gi|228992951|ref|ZP_04152875.1| Transcriptional regulator mntR [Bacillus pseudomycoides DSM
          12442]
 gi|229006545|ref|ZP_04164181.1| Transcriptional regulator mntR [Bacillus mycoides Rock1-4]
 gi|228754684|gb|EEM04093.1| Transcriptional regulator mntR [Bacillus mycoides Rock1-4]
 gi|228766808|gb|EEM15447.1| Transcriptional regulator mntR [Bacillus pseudomycoides DSM
          12442]
          Length = 163

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 34 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 93

Query: 66 L 66
          L
Sbjct: 94 L 94


>gi|291295685|ref|YP_003507083.1| transcriptional regulator, IclR family [Meiothermus ruber DSM
          1279]
 gi|290470644|gb|ADD28063.1| transcriptional regulator, IclR family [Meiothermus ruber DSM
          1279]
          Length = 880

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCR 68
           +RVL Y A H +     +++A     S    + +L  LV  G  E    R G   RL +
Sbjct: 13 ALRVLAYLAEHPEG-VEAARLAAFLGKSLSTAYALLASLVSEGFAE----RDGSTYRLSK 67

Query: 69 PA 70
           A
Sbjct: 68 NA 69


>gi|19704750|ref|NP_604312.1| aminotransferase class-I [Fusobacterium nucleatum subsp.
          nucleatum ATCC 25586]
 gi|296328478|ref|ZP_06870998.1| GntR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
 gi|19715074|gb|AAL95611.1| Transcriptional regulator, GntR family [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296154384|gb|EFG95182.1| GntR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
          Length = 475

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    + QI+    ++   + K+++ L + G + +++G+ 
Sbjct: 32 ENDKFYSVRQISIKYKVNLNTVLKVIRMLEEEGYLYSIKGKG 73


>gi|78045943|ref|YP_362118.1| IclR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034373|emb|CAJ22018.1| transcriptional regulator, IclR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 302

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 58  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111

Query: 63  -GVRL 66
            G  L
Sbjct: 112 RGYVL 116


>gi|302545543|ref|ZP_07297885.1| putative regulatory protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302463161|gb|EFL26254.1| putative regulatory protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 355

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
                 S++A    +S     +    L +AG+V T+R  +GG  L
Sbjct: 275 GGGCTTSELARRVGVSLASASQHASVLREAGLVHTLR--QGGAVL 317


>gi|298387240|ref|ZP_06996793.1| DNA-binding transcriptional activator FucR [Bacteroides sp.
          1_1_14]
 gi|298259909|gb|EFI02780.1| DNA-binding transcriptional activator FucR [Bacteroides sp.
          1_1_14]
          Length = 331

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|320010783|gb|ADW05633.1| ROK family protein [Streptomyces flavogriseus ATCC 33331]
          Length = 386

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV---RGRRG 62
          R  +   +    P   ++I E   +S+    ++L  L  AG+V +    RGR G
Sbjct: 18 RAALDL-LVAQGPLTRTRIGELTGLSKPTASQLLARLEDAGLVRSTGSQRGRPG 70


>gi|253568730|ref|ZP_04846141.1| FucR [Bacteroides sp. 1_1_6]
 gi|251842803|gb|EES70883.1| FucR [Bacteroides sp. 1_1_6]
          Length = 331

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|269958107|ref|YP_003327896.1| Helix-turn-helix type 11 domain-containing protein [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269306788|gb|ACZ32338.1| Helix-turn-helix type 11 domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 320

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
             ++A+   +++  +   +  L + G  V T RG  G  RL 
Sbjct: 22 SGQELAQRLGVTDRTVRNDVARLRELGYPVHTTRGPGGRYRLG 64


>gi|29346682|ref|NP_810185.1| FucR [Bacteroides thetaiotaomicron VPI-5482]
 gi|6015980|gb|AAF01483.1|AF137263_2 FucR [Bacteroides thetaiotaomicron]
 gi|29338579|gb|AAO76379.1| FucR [Bacteroides thetaiotaomicron VPI-5482]
          Length = 331

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    I+Q++    +S   +FK    L + G++++  G+ 
Sbjct: 34 REGDSLPSINQLSAEYGVSRDTVFKAFLDLRERGLIDSTPGKG 76


>gi|88800929|ref|ZP_01116481.1| hypothetical protein MED297_04644 [Reinekea sp. MED297]
 gi|88776304|gb|EAR07527.1| hypothetical protein MED297_04644 [Reinekea sp. MED297]
          Length = 248

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +Y A+    P  I  IA+   I+     ++L+ + + G+V
Sbjct: 19 IYLALLESGPASIRDIADRAGINRGTTHELLKRMQQKGVV 58


>gi|332669215|ref|YP_004452223.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484]
 gi|332338253|gb|AEE44836.1| regulatory protein ArsR [Cellulomonas fimi ATCC 484]
          Length = 110

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          RVL+      + P   S +A+A  +S   +   L  L   G+VE+V  GRR   RL  P
Sbjct: 26 RVLLAL---REAPAYPSDLADALGVSRQVMSNQLACLRGCGLVESVPDGRRTWYRLADP 81


>gi|297197906|ref|ZP_06915303.1| ArsR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|197717151|gb|EDY61185.1| ArsR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 125

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  + +   +S+  +   L+ L +AG+V + R
Sbjct: 46 LRLLSLIASHEGGEACVCDLTDPFDVSQPTISHHLKVLREAGLVGSER 93


>gi|125625160|ref|YP_001033643.1| transcriptional regulator of the zit operon [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|124493968|emb|CAL98965.1| transcriptional regulator of the zit operon [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|300071969|gb|ADJ61369.1| transcriptional regulator of the zit operon [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 145

 Score = 36.5 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A      +  ++IAE   IS   + K L+ L +  ++++ R
Sbjct: 41 HILMILAA---EVSTNARIAEQLKISPAAVTKALKKLQEQELIKSSR 84


>gi|325916833|ref|ZP_08179084.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas vesicatoria ATCC 35937]
 gi|325536984|gb|EGD08729.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas vesicatoria ATCC 35937]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H+     +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHS-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|317406130|gb|EFV86387.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans
          C54]
          Length = 245

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RVL   A    +D P  I+ +AE   +++  L++ +  L + G V    G  G
Sbjct: 11 RVLYVLATLARHDGPLSIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYG 63


>gi|315645218|ref|ZP_07898343.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
 gi|315279260|gb|EFU42566.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
          Length = 318

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L +   + N        +AE   +SE  + + ++ L  AGI V   RG  GG  L
Sbjct: 5  RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSHGGWVL 61


>gi|313103516|pdb|2XRN|A Chain A, Crystal Structure Of Ttgv
 gi|313103517|pdb|2XRN|B Chain B, Crystal Structure Of Ttgv
 gi|313103518|pdb|2XRO|A Chain A, Crystal Structure Of Ttgv In Complex With Its Dna
          Operator
 gi|313103519|pdb|2XRO|B Chain B, Crystal Structure Of Ttgv In Complex With Its Dna
          Operator
 gi|313103520|pdb|2XRO|E Chain E, Crystal Structure Of Ttgv In Complex With Its Dna
          Operator
 gi|313103521|pdb|2XRO|F Chain F, Crystal Structure Of Ttgv In Complex With Its Dna
          Operator
          Length = 241

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H  +   ++ IA+   +    + +I+  L +  +VE + G  GG RL 
Sbjct: 11 IMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGFRLG 63


>gi|295133403|ref|YP_003584079.1| regulatory protein GntR, HTH [Zunongwangia profunda SM-A87]
 gi|294981418|gb|ADF51883.1| regulatory protein GntR, HTH [Zunongwangia profunda SM-A87]
          Length = 346

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          Y +I    P  I++I+E   +S   + K    L    I+ +V+G+  G  + +
Sbjct: 31 YLSIDQKIP-SINEISEEFYLSRDTVEKAYNILKDQKIIISVKGK--GYYIAK 80


>gi|262202604|ref|YP_003273812.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262085951|gb|ACY21919.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247]
          Length = 123

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+ +  +S+  +   L+ L  AG+++  R
Sbjct: 39 LRLLSLVASHAGGEACVCDISASFDVSQPTISHHLKVLRSAGLLDCER 86


>gi|218883343|ref|YP_002427725.1| Putative transcriptional regulator, AsnC family [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764959|gb|ACL10358.1| Putative transcriptional regulator, AsnC family [Desulfurococcus
           kamchatkensis 1221n]
          Length = 151

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--LCR 68
           +++L Y   H+      SQ+++   +    + KIL  L + G VE      GG +  L +
Sbjct: 11  VQILKYLVRHSGQEIYQSQLSKDLNLDPRIISKILIKLEELGSVERTSITHGGRKTFLVK 70

Query: 69  PADQITILDVVKATEE----SFFVAECFAS----HKIDCPLVGSC 105
           P  +     +++  EE     + + E F        I CP +  C
Sbjct: 71  PVRE----KLIRIMEEAGIDPYSLEEIFNDVADIPCIKCPYIYKC 111


>gi|206971362|ref|ZP_03232313.1| iron-dependent repressor family protein [Bacillus cereus AH1134]
 gi|206734134|gb|EDZ51305.1| iron-dependent repressor family protein [Bacillus cereus AH1134]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|163853297|ref|YP_001641340.1| regulatory protein Crp [Methylobacterium extorquens PA1]
 gi|218532154|ref|YP_002422970.1| Crp/Fnr family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|240140707|ref|YP_002965187.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium extorquens AM1]
 gi|254563218|ref|YP_003070313.1| Crp/Fnr family transcriptional regulator [Methylobacterium
           extorquens DM4]
 gi|163664902|gb|ABY32269.1| regulatory protein Crp [Methylobacterium extorquens PA1]
 gi|218524457|gb|ACK85042.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium chloromethanicum CM4]
 gi|240010684|gb|ACS41910.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium extorquens AM1]
 gi|254270496|emb|CAX26499.1| putative transcriptional regulator, Crp/Fnr family
           [Methylobacterium extorquens DM4]
          Length = 253

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 11  IRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+      D    P     +A    +   +L +IL+ L + G++E  RGR
Sbjct: 156 LRWLLTLQDRLDNNVLPITQESLAAMLGVQRTYLTRILRMLQQQGLIEVGRGR 208


>gi|120405818|ref|YP_955647.1| MarR family transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958636|gb|ABM15641.1| transcriptional regulator, MarR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 363

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           R+++  A     P  +S++AEA  +S       L  L   G V + +   
Sbjct: 292 RLVVELA-RGSEPRSVSELAEAVGVSNQSASAALGRLAAEGWVTSSKAAG 340


>gi|111022640|ref|YP_705612.1| hypothetical protein RHA1_ro05675 [Rhodococcus jostii RHA1]
 gi|110822170|gb|ABG97454.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 332

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +++A+   I+   + + ++ L   G  V+   G  GG +L   A+
Sbjct: 32 SGAELADRLGITPRTVRRDVEKLRDLGYPVDATVGVGGGYQLGAGAE 78


>gi|78047870|ref|YP_364045.1| ArsR family transcriptional regulator [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|121593760|ref|YP_985656.1| ArsR family transcriptional regulator [Acidovorax sp. JS42]
 gi|78036300|emb|CAJ23991.1| transcriptional regulator, ArsR family [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|120605840|gb|ABM41580.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42]
          Length = 227

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKAT 82
           + ++AE   I+     + LQ L +AG V+T R G+    RL        +  VV A 
Sbjct: 41 SVEKLAELTGITVANASQHLQHLKRAGCVQTRRDGKHMLYRLGPGP----LASVVVAL 94


>gi|30264279|ref|NP_846656.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Ames]
 gi|42783323|ref|NP_980570.1| manganese transport transcriptional regulator [Bacillus cereus
          ATCC 10987]
 gi|47529721|ref|YP_021070.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. 'Ames Ancestor']
 gi|49187106|ref|YP_030358.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Sterne]
 gi|49478577|ref|YP_038265.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|52141292|ref|YP_085537.1| manganese transport transcriptional regulator [Bacillus cereus
          E33L]
 gi|165872975|ref|ZP_02217597.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0488]
 gi|167634486|ref|ZP_02392806.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0442]
 gi|167638583|ref|ZP_02396859.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0193]
 gi|170687379|ref|ZP_02878596.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0465]
 gi|170709030|ref|ZP_02899460.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0389]
 gi|177654824|ref|ZP_02936581.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0174]
 gi|190565919|ref|ZP_03018838.1| iron-dependent repressor family protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|196034810|ref|ZP_03102217.1| iron-dependent repressor family protein [Bacillus cereus W]
 gi|196041573|ref|ZP_03108865.1| iron-dependent repressor family protein [Bacillus cereus
          NVH0597-99]
 gi|196046344|ref|ZP_03113570.1| iron-dependent repressor family protein [Bacillus cereus 03BB108]
 gi|206976254|ref|ZP_03237162.1| iron-dependent repressor family protein [Bacillus cereus
          H3081.97]
 gi|217961693|ref|YP_002340263.1| manganese transport transcriptional regulator [Bacillus cereus
          AH187]
 gi|218905340|ref|YP_002453174.1| iron-dependent repressor family protein [Bacillus cereus AH820]
 gi|222097651|ref|YP_002531708.1| manganese transport transcriptional regulator [Bacillus cereus
          Q1]
 gi|225866185|ref|YP_002751563.1| iron-dependent repressor family protein [Bacillus cereus 03BB102]
 gi|227816979|ref|YP_002816988.1| iron-dependent repressor family protein [Bacillus anthracis str.
          CDC 684]
 gi|229603034|ref|YP_002868497.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0248]
 gi|254683968|ref|ZP_05147828.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. CNEVA-9066]
 gi|254721802|ref|ZP_05183591.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. A1055]
 gi|254736316|ref|ZP_05194022.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Western North America USA6153]
 gi|254741354|ref|ZP_05199041.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Kruger B]
 gi|254754012|ref|ZP_05206047.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Vollum]
 gi|254757883|ref|ZP_05209910.1| manganese transport transcriptional regulator [Bacillus anthracis
          str. Australia 94]
 gi|301055697|ref|YP_003793908.1| iron-dependent repressor family protein [Bacillus anthracis CI]
 gi|38604750|sp|Q81M27|MNTR_BACAN RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|81394859|sp|Q6HDW1|MNTR_BACHK RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|81409199|sp|Q730Y9|MNTR_BACC1 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|81686261|sp|Q634Y0|MNTR_BACCZ RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|226704804|sp|B7JMS8|MNTR_BACC0 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|226704807|sp|B7HNW6|MNTR_BACC7 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|254811530|sp|C3P8B4|MNTR_BACAA RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|254811531|sp|C3LKN2|MNTR_BACAC RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|254811532|sp|C1ERS6|MNTR_BACC3 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|254811533|sp|B9IXJ8|MNTR_BACCQ RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|30258924|gb|AAP28142.1| iron-dependent repressor family protein [Bacillus anthracis str.
          Ames]
 gi|42739251|gb|AAS43178.1| iron-dependent repressor family protein [Bacillus cereus ATCC
          10987]
 gi|47504869|gb|AAT33545.1| iron-dependent repressor family protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49181033|gb|AAT56409.1| iron-dependent repressor family protein [Bacillus anthracis str.
          Sterne]
 gi|49330133|gb|AAT60779.1| iron-dependent repressor [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51974761|gb|AAU16311.1| iron-dependent repressor [Bacillus cereus E33L]
 gi|164711258|gb|EDR16813.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0488]
 gi|167513431|gb|EDR88801.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0193]
 gi|167529938|gb|EDR92673.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0442]
 gi|170126057|gb|EDS94954.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0389]
 gi|170668574|gb|EDT19320.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0465]
 gi|172080485|gb|EDT65571.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0174]
 gi|190562838|gb|EDV16804.1| iron-dependent repressor family protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|195992349|gb|EDX56310.1| iron-dependent repressor family protein [Bacillus cereus W]
 gi|196022814|gb|EDX61495.1| iron-dependent repressor family protein [Bacillus cereus 03BB108]
 gi|196027561|gb|EDX66176.1| iron-dependent repressor family protein [Bacillus cereus
          NVH0597-99]
 gi|206745450|gb|EDZ56849.1| iron-dependent repressor family protein [Bacillus cereus
          H3081.97]
 gi|217065620|gb|ACJ79870.1| iron-dependent repressor family protein [Bacillus cereus AH187]
 gi|218537156|gb|ACK89554.1| iron-dependent repressor family protein [Bacillus cereus AH820]
 gi|221241709|gb|ACM14419.1| iron-dependent repressor [Bacillus cereus Q1]
 gi|225787220|gb|ACO27437.1| iron-dependent repressor family protein [Bacillus cereus 03BB102]
 gi|227003331|gb|ACP13074.1| iron-dependent repressor family protein [Bacillus anthracis str.
          CDC 684]
 gi|229267442|gb|ACQ49079.1| iron-dependent repressor family protein [Bacillus anthracis str.
          A0248]
 gi|300377866|gb|ADK06770.1| iron-dependent repressor family protein [Bacillus cereus biovar
          anthracis str. CI]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|47569463|ref|ZP_00240144.1| iron-dependent repressor [Bacillus cereus G9241]
 gi|47553878|gb|EAL12248.1| iron-dependent repressor [Bacillus cereus G9241]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|324328118|gb|ADY23378.1| manganese transport transcriptional regulator [Bacillus
          thuringiensis serovar finitimus YBT-020]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|313905421|ref|ZP_07838786.1| Helix-turn-helix type 11 domain protein [Eubacterium
          cellulosolvens 6]
 gi|313469744|gb|EFR65081.1| Helix-turn-helix type 11 domain protein [Eubacterium
          cellulosolvens 6]
          Length = 304

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79
           +      ++AE   +S   + + ++ L KAGI + T +G  GG         I+I+D  
Sbjct: 15 QEEKTTAPELAERFEVSRRTINRDIEDLCKAGIPIRTAQGTGGG---------ISIMDGY 65

Query: 80 K 80
          +
Sbjct: 66 R 66


>gi|294812240|ref|ZP_06770883.1| Putative DeoR-family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|326440919|ref|ZP_08215653.1| DeoR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294324839|gb|EFG06482.1| Putative DeoR-family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
          Length = 327

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + N      +++A    +SE  + +    L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQNRPSMTGAELARELEVSERTVTRDALALSEAGVPVHADRGRAGGYRL 61


>gi|228998997|ref|ZP_04158579.1| Transcriptional regulator mntR [Bacillus mycoides Rock3-17]
 gi|228760614|gb|EEM09578.1| Transcriptional regulator mntR [Bacillus mycoides Rock3-17]
          Length = 155

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 26 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 85

Query: 66 L 66
          L
Sbjct: 86 L 86


>gi|254490519|ref|ZP_05103705.1| hypothetical protein MDMS009_851 [Methylophaga thiooxidans
          DMS010]
 gi|224464263|gb|EEF80526.1| hypothetical protein MDMS009_851 [Methylophaga thiooxydans
          DMS010]
          Length = 121

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   +          +       I+E        L   L  LV AGIV + +
Sbjct: 13 LSQETR--LHAFRLLVKAGNEGLAAGYISEQLNTPHNTLSFHLTHLVNAGIVHSQK 66


>gi|182624222|ref|ZP_02952008.1| transcriptional regulator, GntR family [Clostridium perfringens D
          str. JGS1721]
 gi|177910636|gb|EDT73004.1| transcriptional regulator, GntR family [Clostridium perfringens D
          str. JGS1721]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|169334920|ref|ZP_02862113.1| hypothetical protein ANASTE_01326 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257658|gb|EDS71624.1| hypothetical protein ANASTE_01326 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 299

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          N        +A    +S   + + +  L KAGI + T RG  GG+ L
Sbjct: 15 NKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYL 61


>gi|168217072|ref|ZP_02642697.1| transcriptional regulator, GntR family [Clostridium perfringens
          NCTC 8239]
 gi|182380791|gb|EDT78270.1| transcriptional regulator, GntR family [Clostridium perfringens
          NCTC 8239]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|168209600|ref|ZP_02635225.1| transcriptional regulator, GntR family [Clostridium perfringens B
          str. ATCC 3626]
 gi|170712211|gb|EDT24393.1| transcriptional regulator, GntR family [Clostridium perfringens B
          str. ATCC 3626]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|110803289|ref|YP_698602.1| transcriptional regulator [Clostridium perfringens SM101]
 gi|110683790|gb|ABG87160.1| transcriptional regulator, GntR family [Clostridium perfringens
          SM101]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|126435087|ref|YP_001070778.1| regulatory proteins, IclR [Mycobacterium sp. JLS]
 gi|126234887|gb|ABN98287.1| transcriptional regulator, IclR family [Mycobacterium sp. JLS]
          Length = 262

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  + VL   A          +IA A  + +  + +++  L   G VE V GR G  
Sbjct: 13 QSVDRALVVLEILAKAGQAGVT--EIAAALDVHKSTVSRLIAVLESRGYVEQVSGR-GKY 69

Query: 65 RLC 67
          RL 
Sbjct: 70 RLG 72


>gi|54024998|ref|YP_119240.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016506|dbj|BAD57876.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 325

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           ++A    +S   L + ++ L + G  V T  G  G  RL 
Sbjct: 24 EELAARLAVSPRTLRRDVERLREYGYPVRTQPGPGGYYRLA 64


>gi|1303895|dbj|BAA12551.1| YqhN [Bacillus subtilis]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|18310265|ref|NP_562199.1| transcriptional regulator [Clostridium perfringens str. 13]
 gi|168207542|ref|ZP_02633547.1| transcriptional regulator, GntR family [Clostridium perfringens E
          str. JGS1987]
 gi|169344548|ref|ZP_02865516.1| transcriptional regulator, GntR family [Clostridium perfringens C
          str. JGS1495]
 gi|18144945|dbj|BAB80989.1| probable transcriptional regulator [Clostridium perfringens str.
          13]
 gi|169297309|gb|EDS79419.1| transcriptional regulator, GntR family [Clostridium perfringens C
          str. JGS1495]
 gi|170661101|gb|EDT13784.1| transcriptional regulator, GntR family [Clostridium perfringens E
          str. JGS1987]
          Length = 249

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A++  +S + L + L  L   G+V+ +RG+ 
Sbjct: 43 ELAKSFGVSRMTLRQALALLQDDGLVKNIRGKG 75


>gi|325970576|ref|YP_004246767.1| hypothetical protein SpiBuddy_0746 [Spirochaeta sp. Buddy]
 gi|324025814|gb|ADY12573.1| hypothetical protein SpiBuddy_0746 [Spirochaeta sp. Buddy]
          Length = 298

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++       +L Y   +         +AE   +S   +++ ++ L +AGI V ++ G
Sbjct: 1  MQTSRMFQ----ILYYLIANQ--TVTAGHLAEKLEVSTRTIYRDIERLSEAGIPVYSIAG 54

Query: 60 RRGGVRL 66
          R+GG+ L
Sbjct: 55 RQGGLAL 61


>gi|317500640|ref|ZP_07958859.1| biotin-[acetyl-CoA-carboxylase] ligase [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089880|ref|ZP_08338773.1| hypothetical protein HMPREF1025_02356 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316897958|gb|EFV20010.1| biotin-[acetyl-CoA-carboxylase] ligase [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330403577|gb|EGG83135.1| hypothetical protein HMPREF1025_02356 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 332

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
             D      +I E   +S   ++K+++ L + G  VE VR +  G R+    D
Sbjct: 10 READGYISGQEICEKFNVSRTAVWKVIRRLQEDGYEVEAVRNK--GYRMVESPD 61


>gi|289668140|ref|ZP_06489215.1| transcriptional regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|254564241|ref|YP_003071336.1| regulatory protein, Crp [Methylobacterium extorquens DM4]
 gi|254271519|emb|CAX27534.1| putative regulatory protein, Crp (cAMP receptor protein)
           [Methylobacterium extorquens DM4]
          Length = 290

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P   + +A+   IS + + ++LQ L + G++E
Sbjct: 217 PITQADLADTLGISCVHINRVLQKLRRDGLIE 248


>gi|229545945|ref|ZP_04434670.1| CBS domain transcriptional regulator [Enterococcus faecalis
          TX1322]
 gi|229550137|ref|ZP_04438862.1| CBS domain transcriptional regulator [Enterococcus faecalis ATCC
          29200]
 gi|255972914|ref|ZP_05423500.1| CBS domain-containing protein [Enterococcus faecalis T1]
 gi|256618952|ref|ZP_05475798.1| DRTGG domain-containing protein [Enterococcus faecalis ATCC 4200]
 gi|256762379|ref|ZP_05502959.1| CBS domain-containing protein [Enterococcus faecalis T3]
 gi|256853009|ref|ZP_05558379.1| CBS domain-containing protein [Enterococcus faecalis T8]
 gi|256962043|ref|ZP_05566214.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          Merz96]
 gi|256965241|ref|ZP_05569412.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          HIP11704]
 gi|257078895|ref|ZP_05573256.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          JH1]
 gi|257082659|ref|ZP_05577020.1| thioesterase [Enterococcus faecalis E1Sol]
 gi|257085368|ref|ZP_05579729.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis Fly1]
 gi|257086863|ref|ZP_05581224.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis D6]
 gi|257089766|ref|ZP_05584127.1| CBS domain-containing protein [Enterococcus faecalis CH188]
 gi|257415982|ref|ZP_05592976.1| DRTGG domain-containing protein [Enterococcus faecalis AR01/DG]
 gi|257422738|ref|ZP_05599728.1| CBS domain-containing protein [Enterococcus faecalis X98]
 gi|293383065|ref|ZP_06628983.1| thioesterase family protein [Enterococcus faecalis R712]
 gi|293387782|ref|ZP_06632326.1| thioesterase family protein [Enterococcus faecalis S613]
 gi|294779565|ref|ZP_06744959.1| DRTGG domain protein [Enterococcus faecalis PC1.1]
 gi|300860271|ref|ZP_07106358.1| DRTGG domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|307271138|ref|ZP_07552421.1| DRTGG domain protein [Enterococcus faecalis TX4248]
 gi|307277490|ref|ZP_07558582.1| DRTGG domain protein [Enterococcus faecalis TX2134]
 gi|307279179|ref|ZP_07560237.1| DRTGG domain protein [Enterococcus faecalis TX0860]
 gi|307288132|ref|ZP_07568142.1| DRTGG domain protein [Enterococcus faecalis TX0109]
 gi|307291357|ref|ZP_07571241.1| DRTGG domain protein [Enterococcus faecalis TX0411]
 gi|312900637|ref|ZP_07759934.1| DRTGG domain protein [Enterococcus faecalis TX0470]
 gi|312904116|ref|ZP_07763284.1| DRTGG domain protein [Enterococcus faecalis TX0635]
 gi|312907346|ref|ZP_07766337.1| DRTGG domain protein [Enterococcus faecalis DAPTO 512]
 gi|312909962|ref|ZP_07768810.1| DRTGG domain protein [Enterococcus faecalis DAPTO 516]
 gi|312952376|ref|ZP_07771251.1| DRTGG domain protein [Enterococcus faecalis TX0102]
 gi|229304723|gb|EEN70719.1| CBS domain transcriptional regulator [Enterococcus faecalis ATCC
          29200]
 gi|229308908|gb|EEN74895.1| CBS domain transcriptional regulator [Enterococcus faecalis
          TX1322]
 gi|255963932|gb|EET96408.1| CBS domain-containing protein [Enterococcus faecalis T1]
 gi|256598479|gb|EEU17655.1| DRTGG domain-containing protein [Enterococcus faecalis ATCC 4200]
 gi|256683630|gb|EEU23325.1| CBS domain-containing protein [Enterococcus faecalis T3]
 gi|256711468|gb|EEU26506.1| CBS domain-containing protein [Enterococcus faecalis T8]
 gi|256952539|gb|EEU69171.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          Merz96]
 gi|256955737|gb|EEU72369.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          HIP11704]
 gi|256986925|gb|EEU74227.1| CBS:Thioesterase superfamily protein DRTGG [Enterococcus faecalis
          JH1]
 gi|256990689|gb|EEU77991.1| thioesterase [Enterococcus faecalis E1Sol]
 gi|256993398|gb|EEU80700.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis Fly1]
 gi|256994893|gb|EEU82195.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus faecalis D6]
 gi|256998578|gb|EEU85098.1| CBS domain-containing protein [Enterococcus faecalis CH188]
 gi|257157810|gb|EEU87770.1| DRTGG domain-containing protein [Enterococcus faecalis ARO1/DG]
 gi|257164562|gb|EEU94522.1| CBS domain-containing protein [Enterococcus faecalis X98]
 gi|291079730|gb|EFE17094.1| thioesterase family protein [Enterococcus faecalis R712]
 gi|291082852|gb|EFE19815.1| thioesterase family protein [Enterococcus faecalis S613]
 gi|294453355|gb|EFG21763.1| DRTGG domain protein [Enterococcus faecalis PC1.1]
 gi|295112893|emb|CBL31530.1| Predicted transcriptional regulator containing CBS domains
          [Enterococcus sp. 7L76]
 gi|300849310|gb|EFK77060.1| DRTGG domain protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497588|gb|EFM67121.1| DRTGG domain protein [Enterococcus faecalis TX0411]
 gi|306500868|gb|EFM70186.1| DRTGG domain protein [Enterococcus faecalis TX0109]
 gi|306504304|gb|EFM73516.1| DRTGG domain protein [Enterococcus faecalis TX0860]
 gi|306505755|gb|EFM74933.1| DRTGG domain protein [Enterococcus faecalis TX2134]
 gi|306512636|gb|EFM81285.1| DRTGG domain protein [Enterococcus faecalis TX4248]
 gi|310626374|gb|EFQ09657.1| DRTGG domain protein [Enterococcus faecalis DAPTO 512]
 gi|310629760|gb|EFQ13043.1| DRTGG domain protein [Enterococcus faecalis TX0102]
 gi|310632592|gb|EFQ15875.1| DRTGG domain protein [Enterococcus faecalis TX0635]
 gi|311289920|gb|EFQ68476.1| DRTGG domain protein [Enterococcus faecalis DAPTO 516]
 gi|311292118|gb|EFQ70674.1| DRTGG domain protein [Enterococcus faecalis TX0470]
 gi|315027386|gb|EFT39318.1| DRTGG domain protein [Enterococcus faecalis TX2137]
 gi|315030008|gb|EFT41940.1| DRTGG domain protein [Enterococcus faecalis TX4000]
 gi|315033774|gb|EFT45706.1| DRTGG domain protein [Enterococcus faecalis TX0017]
 gi|315036860|gb|EFT48792.1| DRTGG domain protein [Enterococcus faecalis TX0027]
 gi|315145684|gb|EFT89700.1| DRTGG domain protein [Enterococcus faecalis TX2141]
 gi|315147869|gb|EFT91885.1| DRTGG domain protein [Enterococcus faecalis TX4244]
 gi|315150654|gb|EFT94670.1| DRTGG domain protein [Enterococcus faecalis TX0012]
 gi|315153339|gb|EFT97355.1| DRTGG domain protein [Enterococcus faecalis TX0031]
 gi|315155884|gb|EFT99900.1| DRTGG domain protein [Enterococcus faecalis TX0043]
 gi|315157949|gb|EFU01966.1| DRTGG domain protein [Enterococcus faecalis TX0312]
 gi|315160229|gb|EFU04246.1| DRTGG domain protein [Enterococcus faecalis TX0645]
 gi|315164252|gb|EFU08269.1| DRTGG domain protein [Enterococcus faecalis TX1302]
 gi|315166654|gb|EFU10671.1| DRTGG domain protein [Enterococcus faecalis TX1341]
 gi|315170062|gb|EFU14079.1| DRTGG domain protein [Enterococcus faecalis TX1342]
 gi|315174452|gb|EFU18469.1| DRTGG domain protein [Enterococcus faecalis TX1346]
 gi|315578461|gb|EFU90652.1| DRTGG domain protein [Enterococcus faecalis TX0630]
 gi|323480607|gb|ADX80046.1| bacterial regulatory protein, GntR family protein [Enterococcus
          faecalis 62]
 gi|327535013|gb|AEA93847.1| thioesterase [Enterococcus faecalis OG1RF]
 gi|329571438|gb|EGG53125.1| DRTGG domain protein [Enterococcus faecalis TX1467]
          Length = 439

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA++  +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVRIIEGDV 85


>gi|218899368|ref|YP_002447779.1| iron-dependent repressor family protein [Bacillus cereus G9842]
 gi|226704805|sp|B7IXJ5|MNTR_BACC2 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|218546048|gb|ACK98442.1| iron-dependent repressor family protein [Bacillus cereus G9842]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|166714115|ref|ZP_02245322.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|88856844|ref|ZP_01131497.1| putative GntR-family transcriptional regulator [marine
          actinobacterium PHSC20C1]
 gi|88813914|gb|EAR23783.1| putative GntR-family transcriptional regulator [marine
          actinobacterium PHSC20C1]
          Length = 272

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +  +     SQ+A+   ++ +   + L  L + G++ET RGR GG
Sbjct: 43 VPGERLPSESQLAKRFGVALVTAREGLSILRENGLIETRRGREGG 87


>gi|255975969|ref|ZP_05426555.1| CBS domain-containing protein [Enterococcus faecalis T2]
 gi|255968841|gb|EET99463.1| CBS domain-containing protein [Enterococcus faecalis T2]
          Length = 277

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA++  +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVRIIEGDV 85


>gi|182435036|ref|YP_001822755.1| ArsR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|326775552|ref|ZP_08234817.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
 gi|46403150|gb|AAS92597.1| putative transcription regulator [Streptomyces griseus]
 gi|178463552|dbj|BAG18072.1| putative ArsR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
 gi|326655885|gb|EGE40731.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
          Length = 131

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP 69
          +R L         P R+  +A    IS   + K L+ L +AG+V    RGR     L R 
Sbjct: 22 LRAL------ASGPARVVDLAARHPISRPAVSKHLRVLTEAGLVTVEDRGRERHYALARA 75


>gi|29375939|ref|NP_815093.1| CBS domain-containing protein [Enterococcus faecalis V583]
 gi|227518638|ref|ZP_03948687.1| CBS domain transcriptional regulator [Enterococcus faecalis
          TX0104]
 gi|227553168|ref|ZP_03983217.1| CBS domain transcriptional regulator [Enterococcus faecalis HH22]
 gi|29343401|gb|AAO81163.1| CBS domain protein [Enterococcus faecalis V583]
 gi|227073895|gb|EEI11858.1| CBS domain transcriptional regulator [Enterococcus faecalis
          TX0104]
 gi|227177694|gb|EEI58666.1| CBS domain transcriptional regulator [Enterococcus faecalis HH22]
 gi|315575572|gb|EFU87763.1| DRTGG domain protein [Enterococcus faecalis TX0309B]
 gi|315579986|gb|EFU92177.1| DRTGG domain protein [Enterococcus faecalis TX0309A]
          Length = 439

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA++  +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRSIAKSLSVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVRIIEGDV 85


>gi|221310375|ref|ZP_03592222.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. subtilis str. 168]
 gi|221314699|ref|ZP_03596504.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. subtilis str. NCIB 3610]
 gi|221319622|ref|ZP_03600916.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. subtilis str. JH642]
 gi|221323898|ref|ZP_03605192.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. subtilis str. SMY]
 gi|255767549|ref|NP_390332.2| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. subtilis str. 168]
 gi|321311936|ref|YP_004204223.1| manganese transport transcriptional regulator [Bacillus subtilis
          BSn5]
 gi|251757298|sp|P54512|MNTR_BACSU RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|34811004|pdb|1ON1|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ab Conformation.
 gi|34811005|pdb|1ON1|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ab Conformation.
 gi|93279290|pdb|2EV0|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Cadmium
 gi|93279291|pdb|2EV0|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Cadmium
 gi|93279292|pdb|2EV5|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Calcium
 gi|93279293|pdb|2EV5|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Calcium
 gi|93279294|pdb|2EV6|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Zinc
 gi|93279295|pdb|2EV6|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Zinc
 gi|93279433|pdb|2F5C|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Hexagonal Crystal Form
 gi|93279434|pdb|2F5D|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ac Conformation, Ph 6.5
 gi|93279435|pdb|2F5D|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ac Conformation, Ph 6.5
 gi|93279436|pdb|2F5E|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ab Conformation, Ph 6.5
 gi|93279437|pdb|2F5E|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ab Conformation, Ph 6.5
 gi|93279438|pdb|2F5F|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ac Conformation, Ph 8.5
 gi|93279439|pdb|2F5F|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr)
          Bound To Manganese, Ac Conformation, Ph 8.5
 gi|119389997|pdb|2HYG|D Chain D, The Structure Of Apo-Mntr From Bacillus Subtilis, Native
          Form
 gi|225185177|emb|CAB14383.2| transcriptional regulator (DtxR family) [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|291484896|dbj|BAI85971.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. natto BEST195]
 gi|320018210|gb|ADV93196.1| manganese transport transcriptional regulator [Bacillus subtilis
          BSn5]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|307596100|ref|YP_003902417.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM
          14429]
 gi|307551301|gb|ADN51366.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM
          14429]
          Length = 176

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          +++ TD  IRVL       +    +S+IAE   +S + +++ L+ L+  GI
Sbjct: 7  VSRFTDIEIRVLNVL--RENARASVSEIAERLGVSRVTVYRALRSLINKGI 55


>gi|302336969|ref|YP_003802175.1| GntR family transcriptional regulator [Spirochaeta smaragdinae
          DSM 11293]
 gi|301634154|gb|ADK79581.1| GntR domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 245

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +   D     SQI+E   +S+  + + +  L   G++ +V+G+ 
Sbjct: 32 SQPGDKLLSESQISENLNLSKTSVRECVSMLNNIGLIHSVQGKG 75


>gi|295099401|emb|CBK88490.1| Transcriptional regulators of sugar metabolism [Eubacterium
          cylindroides T2-87]
          Length = 253

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           L+Y  + ++   R+  +++   +SE  + K L  L K G +  +    GG  L + 
Sbjct: 8  ALIYEELQSNGRVRVKDLSKKFNVSEDLIRKDLNVLEKEGKLRKI---YGGAVLAKE 61


>gi|302531875|ref|ZP_07284217.1| predicted protein [Streptomyces sp. AA4]
 gi|302440770|gb|EFL12586.1| predicted protein [Streptomyces sp. AA4]
          Length = 236

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +     + +A    ++   + + L+ L   G++E   G RGG  + RP+  
Sbjct: 31 GERLPSEADLAARHGVARNTVREALKSLAGQGLLEIKVGARGGTFIARPSAD 82


>gi|227830715|ref|YP_002832495.1| TrmB family transcriptional regulator [Sulfolobus islandicus
           L.S.2.15]
 gi|227457163|gb|ACP35850.1| transcriptional regulator TrmB [Sulfolobus islandicus L.S.2.15]
          Length = 646

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A+ ++   +  ++A+A  IS+ +   +L+ L + G+VE V+
Sbjct: 478 ALPDEGGLKSQEVADALKISKQYAINVLKNLERKGVVEGVK 518


>gi|167951141|ref|ZP_02538215.1| Putative Transcriptional Regulator, ArsR family protein
          [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 121

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           ++ + +           D    + +I +    S+  + + L  L   GI+ + +GR+ G
Sbjct: 36 SLKAMSHPLRLKILCTLGDQEVSVQEIVDQVGTSQSNISQHLAILRDKGILASAQGRQPG 95

Query: 64 VR 65
          + 
Sbjct: 96 LL 97


>gi|146341971|ref|YP_001207019.1| ArsR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194777|emb|CAL78802.1| Putative transcriptional regulator, arsR family; arsR2
          [Bradyrhizobium sp. ORS278]
          Length = 111

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R L+    H        ++A    + +  L   L  L +AG+V + R
Sbjct: 12 AFRTLV---QHEPEGLPAGELARLLEVPQNTLSSHLAVLSRAGLVSSER 57


>gi|56962183|ref|YP_173906.1| AraC/XylS family transcriptional regulator [Bacillus clausii
           KSM-K16]
 gi|56908418|dbj|BAD62945.1| AraC/XylS family transcriptional regulator [Bacillus clausii
           KSM-K16]
          Length = 298

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL---VKAGIVETVRGRRGGVRLCR 68
           R L Y   + D    ++ IA +  +   +L ++ +          + + R  +    L +
Sbjct: 181 RALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAFTGKSIHEFLISYRINKAKAMLKQ 240

Query: 69  PADQITILDV 78
               I+I D+
Sbjct: 241 --TDISITDI 248


>gi|325929403|ref|ZP_08190531.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas perforans 91-118]
 gi|325540178|gb|EGD11792.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas perforans 91-118]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|289664380|ref|ZP_06485961.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 286

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|257123664|gb|ACV41692.1| MarR family regulatory protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 149

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           VL++   H D    +  I +   IS+     +++ + K G +E +
Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIEVI 82


>gi|225027700|ref|ZP_03716892.1| hypothetical protein EUBHAL_01959 [Eubacterium hallii DSM 3353]
 gi|224955014|gb|EEG36223.1| hypothetical protein EUBHAL_01959 [Eubacterium hallii DSM 3353]
          Length = 247

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
          ND      +IAE   +S   + +++  L   G++E  +G   G  L        +
Sbjct: 37 NDKILPEREIAEKLDVSRNSIREVMHMLEINGLLECRQGS--GNYLRCEPQDYMV 89


>gi|153815884|ref|ZP_01968552.1| hypothetical protein RUMTOR_02129 [Ruminococcus torques ATCC
          27756]
 gi|145846703|gb|EDK23621.1| hypothetical protein RUMTOR_02129 [Ruminococcus torques ATCC
          27756]
          Length = 332

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
             D      +I E   +S   ++K+++ L + G  VE VR +  G R+    D
Sbjct: 10 READGYISGQEICEKFNVSRTAVWKVIRRLQEDGYEVEAVRNK--GYRMVESPD 61


>gi|254239816|ref|ZP_04933138.1| hypothetical protein PA2G_00443 [Pseudomonas aeruginosa 2192]
 gi|126193194|gb|EAZ57257.1| hypothetical protein PA2G_00443 [Pseudomonas aeruginosa 2192]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI +   RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63


>gi|116049412|ref|YP_791785.1| hypothetical protein PA14_45460 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|115584633|gb|ABJ10648.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI +   RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63


>gi|325685995|gb|EGD28056.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 100

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          I +L Y   H + P     I     +S+  + K L  L K   V+
Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKHDFVQ 65


>gi|313106466|ref|ZP_07792697.1| hypothetical protein PA39016_000430034 [Pseudomonas aeruginosa
          39016]
 gi|310879199|gb|EFQ37793.1| hypothetical protein PA39016_000430034 [Pseudomonas aeruginosa
          39016]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI +   RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63


>gi|296390166|ref|ZP_06879641.1| hypothetical protein PaerPAb_18531 [Pseudomonas aeruginosa PAb1]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI +   RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63


>gi|296333391|ref|ZP_06875844.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305675103|ref|YP_003866775.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296149589|gb|EFG90485.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305413347|gb|ADM38466.1| manganese transport transcriptional regulator [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 142

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|271967605|ref|YP_003341801.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270510780|gb|ACZ89058.1| GntR domain-containing protein [Streptosporangium roseum DSM
          43021]
          Length = 226

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 20 HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-ADQITILD 77
                 I   +     +S   + + L+ L    ++ TVRG  GG  +  P  D I+   
Sbjct: 21 QPGDRLPIEPDLCVRYGVSRSTVREALRLLASQNLIRTVRGVTGGSFVAHPDPDHISAY- 79

Query: 78 VVKATEESFFVAE 90
               E SF +  
Sbjct: 80 ----LETSFDLMR 88


>gi|297561637|ref|YP_003680611.1| hypothetical protein Ndas_2690 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296846085|gb|ADH68105.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 324

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            S++A    +S   +   +  L   G  V    G  GG RL 
Sbjct: 26 TGSELAGRLGVSTRTVRADIGRLRSLGYPVAARPGVAGGYRLA 68


>gi|182419287|ref|ZP_02950540.1| GntR-family transcriptional regulator [Clostridium butyricum
          5521]
 gi|237668804|ref|ZP_04528788.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182376927|gb|EDT74498.1| GntR-family transcriptional regulator [Clostridium butyricum
          5521]
 gi|237657152|gb|EEP54708.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 122

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  IA    ++   + K L  L K G+V + R
Sbjct: 31 GDKLPSVRDIASEASVNPNTMQKALTELEKTGLVFSKR 68


>gi|15596664|ref|NP_250158.1| hypothetical protein PA1467 [Pseudomonas aeruginosa PAO1]
 gi|107100901|ref|ZP_01364819.1| hypothetical protein PaerPA_01001931 [Pseudomonas aeruginosa
          PACS2]
 gi|218892660|ref|YP_002441529.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254234565|ref|ZP_04927888.1| hypothetical protein PACG_00426 [Pseudomonas aeruginosa C3719]
 gi|9947420|gb|AAG04856.1|AE004576_5 hypothetical protein PA1467 [Pseudomonas aeruginosa PAO1]
 gi|126166496|gb|EAZ52007.1| hypothetical protein PACG_00426 [Pseudomonas aeruginosa C3719]
 gi|218772888|emb|CAW28700.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+   + +      S++A    +    L + +  L + GI +   RGR GG RL
Sbjct: 8  VLALLEL-LQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRL 63


>gi|291438850|ref|ZP_06578240.1| helix-turn-helix domain-containing protein [Streptomyces
          ghanaensis ATCC 14672]
 gi|291341745|gb|EFE68701.1| helix-turn-helix domain-containing protein [Streptomyces
          ghanaensis ATCC 14672]
          Length = 326

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           N      S++A    +S   +++ ++ L  +G+ V   RG  GG RL
Sbjct: 17 QNRGRMTASELAAELEVSVRTVYRDVEALGASGVPVRAERGPEGGYRL 64


>gi|316933161|ref|YP_004108143.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1]
 gi|315600875|gb|ADU43410.1| regulatory protein ArsR [Rhodopseudomonas palustris DX-1]
          Length = 118

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 3  LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + R+L+ C    D       +A+A  +    +   L  L +AG+V + R
Sbjct: 13 LSQETRLAVFRLLVRC--EPDG-VAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66


>gi|254774761|ref|ZP_05216277.1| transcriptional regulator, ArsR family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
          Length = 134

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +   +   + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 57  VRIAIVLQLRQSHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 115

Query: 69  PADQITILDVVKATEES 85
               I +  V  A EE 
Sbjct: 116 HLAHIVVDAVAHAGEEP 132


>gi|150402972|ref|YP_001330266.1| signal transduction protein [Methanococcus maripaludis C7]
 gi|150034002|gb|ABR66115.1| putative signal transduction protein with CBS domains
          [Methanococcus maripaludis C7]
          Length = 303

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LISIYREKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64


>gi|126649456|ref|ZP_01721697.1| YobV [Bacillus sp. B14905]
 gi|126593781|gb|EAZ87704.1| YobV [Bacillus sp. B14905]
          Length = 309

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++   I+        ++AE   +S   +++ ++ L  AG+ V + +G
Sbjct: 1  MKLER-----LLTMIMILINR-KKVTAQELAEVFNVSVRTIYRDIETLSCAGVPVISQQG 54

Query: 60 RRGGVRL 66
            GG+ L
Sbjct: 55 VHGGISL 61


>gi|186472598|ref|YP_001859940.1| helix-turn-helix type 11 domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184194930|gb|ACC72894.1| Helix-turn-helix type 11 domain protein [Burkholderia phymatum
          STM815]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +          +A+   +S   +++ +  L  AG+ V   RG  GG  L
Sbjct: 9  MLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFAL 61


>gi|108804604|ref|YP_644541.1| ArsR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108765847|gb|ABG04729.1| transcriptional regulator, ArsR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 125

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71
           +L Y A   +      +I EA   ++  +   LQ L   G V   R GRR    +     
Sbjct: 41  ILAYLARRGEAGVS--EIVEAIGATQPRVSVHLQCLAWCGYVRARREGRRAYYSIADE-- 96

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
              +L +++  EE          H   C + G C
Sbjct: 97  --RVLQMLRLAEELLADNR---EHVEACEVTGEC 125


>gi|294627580|ref|ZP_06706163.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598211|gb|EFF42365.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 302

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 58  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111

Query: 63  -GVRL 66
            G  L
Sbjct: 112 RGYVL 116


>gi|288932461|ref|YP_003436521.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM
          10642]
 gi|288894709|gb|ADC66246.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642]
          Length = 208

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          K +DY I+VL+      +     S+IAE   I    +++ ++ L K G+V   RG+
Sbjct: 8  KLSDYEIKVLLTLISEGE--LTASEIAEKSGIPRTSVYETVKSLEKKGLVV-CRGK 60


>gi|229171428|ref|ZP_04299013.1| Transcriptional regulator, DeoR [Bacillus cereus MM3]
 gi|228612132|gb|EEK69369.1| Transcriptional regulator, DeoR [Bacillus cereus MM3]
          Length = 326

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +L++ +          +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 19 ILIFASAQK--TFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70


>gi|284028078|ref|YP_003378009.1| transcriptional regulator TrmB [Kribbella flavida DSM 17836]
 gi|283807371|gb|ADB29210.1| transcriptional regulator, TrmB [Kribbella flavida DSM 17836]
          Length = 109

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP- 69
           RVL+      D P   + +AE   +S   L   L  L   G+V     GRR    L  P 
Sbjct: 24  RVLLAL---QDGPGYPADLAERIGVSRQSLSNHLACLRGCGLVVAEPEGRRTRYELADPQ 80

Query: 70  -ADQIT-ILDVVKATEESFFVAECFASHKIDCP 100
               +T +L+VV A +     A C      +C 
Sbjct: 81  LGTALTELLNVVLAVD----PACCRPDQSGECR 109


>gi|229819369|ref|YP_002880895.1| transcriptional regulator, TrmB [Beutenbergia cavernae DSM 12333]
 gi|229565282|gb|ACQ79133.1| transcriptional regulator, TrmB [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          GIR L   A     P  I++IA A  +     ++IL+ L   G+V  VR   G V L 
Sbjct: 30 GIRTLEVLADAA-RPLTIAEIATALGVHRSIAYRILRTLEDHGLV--VRDSGGAVALG 84


>gi|159905282|ref|YP_001548944.1| signal transduction protein [Methanococcus maripaludis C6]
 gi|159886775|gb|ABX01712.1| putative signal transduction protein with CBS domains
          [Methanococcus maripaludis C6]
          Length = 303

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LISIYREKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64


>gi|153006923|ref|YP_001381248.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5]
 gi|152030496|gb|ABS28264.1| putative ribonuclease BN [Anaeromyxobacter sp. Fw109-5]
          Length = 487

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%)

Query: 5   KRTDYGIRVLMYCA---------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           KR D  ++  +  A         +         ++A    +    + +IL+ LV+AG++ 
Sbjct: 318 KRADQALKETLAVAAGAQIARDFLAGGPRRSAPELAALLEVPPPVIEEILEALVRAGLL- 376

Query: 56  TVRGRRG---GVRLCRPADQITILDVVKAT 82
            VR       G    R  D I   D+  A 
Sbjct: 377 -VRAAVAQHVGYVPGRDLDDIRASDLRDAL 405


>gi|134046651|ref|YP_001098136.1| signal transduction protein [Methanococcus maripaludis C5]
 gi|132664276|gb|ABO35922.1| putative signal transduction protein with CBS domains
          [Methanococcus maripaludis C5]
          Length = 303

 Score = 36.5 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LISIYREKNKAVKGTEIAIRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64


>gi|239831872|ref|ZP_04680201.1| ArsR2 [Ochrobactrum intermedium LMG 3301]
 gi|239824139|gb|EEQ95707.1| ArsR2 [Ochrobactrum intermedium LMG 3301]
          Length = 119

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H     R  ++A    I +  +   L  L +AG+V + R
Sbjct: 25 LVRHEPAGIRAGELARMLDIPQNTMSAHLATLSRAGLVRSER 66


>gi|257064694|ref|YP_003144366.1| Mn-dependent transcriptional regulator [Slackia
          heliotrinireducens DSM 20476]
 gi|256792347|gb|ACV23017.1| Mn-dependent transcriptional regulator [Slackia
          heliotrinireducens DSM 20476]
          Length = 144

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          DY +  ++  A   + P R   +A+   +S+  + K +  L   G 
Sbjct: 24 DY-LEAIVDLAGPENNPIRAVDLAKKLDVSKASVSKAISNLKDKGF 68


>gi|229492720|ref|ZP_04386521.1| helix-turn-helix type 11 domain protein [Rhodococcus erythropolis
          SK121]
 gi|229320379|gb|EEN86199.1| helix-turn-helix type 11 domain protein [Rhodococcus erythropolis
          SK121]
          Length = 236

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 1  MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
          M++ +     +  L+       D     S+++E   ++   + + ++ L+ +G  +E   
Sbjct: 1  MNVNRAAR--LHALVEELRRQGDRGTTCSRLSEEFGVTTRTIKRDIETLMMSGAAIEARS 58

Query: 59 GRRGGVRL 66
          G  GG RL
Sbjct: 59 GPGGGYRL 66


>gi|296128192|ref|YP_003635442.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena
          DSM 20109]
 gi|296020007|gb|ADG73243.1| Helix-turn-helix type 11 domain protein [Cellulomonas flavigena
          DSM 20109]
          Length = 335

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            +        +++A    +SE    + L  L  AG+ + + +GR GG RL
Sbjct: 15 LLLQRRGRVTAAEVARELEVSERTARRDLDALAVAGVPLYSSQGRGGGWRL 65


>gi|258652485|ref|YP_003201641.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
 gi|258555710|gb|ACV78652.1| putative transcriptional regulator [Nakamurella multipartita DSM
          44233]
          Length = 237

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGGVRLCRPADQITIL 76
           D P   + +A    IS   + + L  L+  G V +     RG+RG     RPA    + 
Sbjct: 34 ADGPITAADLAARLGISPAAVRRHLDQLLAEGAVRSREASARGQRGR---GRPARSYLLT 90

Query: 77 DVVK 80
          DV +
Sbjct: 91 DVGR 94


>gi|320107916|ref|YP_004183506.1| IclR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319926437|gb|ADV83512.1| transcriptional regulator, IclR family [Terriglobus saanensis
           SP1PR4]
          Length = 265

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 35/153 (22%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC--- 67
           + VL   A  ++    + +IA    + +  +F+IL  L +AG VE      G  RL    
Sbjct: 14  LAVLESLAT-SERGKALKEIAADVGLGKSTVFRILFTLKEAGYVEQYA-ANGSYRLTLKT 71

Query: 68  -----RPADQITILDVVK--------ATEESFFVAECFASH-------------KIDCPL 101
                R ++++ + DV +          +ES  +AE  A               ++   +
Sbjct: 72  GGLARRHSERLRLTDVARPHLIRLRDDLDESVALAERRAQAVVLIDVLETSHPLRLSFQI 131

Query: 102 VGSCGLTS-VLRKALNAFFDVLTQYSIECLVRN 133
              C + +  L KA+ AF   L+   +  L++N
Sbjct: 132 GDDCPIHATALGKAVAAF---LSPEELASLLKN 161


>gi|294667220|ref|ZP_06732441.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603001|gb|EFF46431.1| transcriptional regulator, IclR family [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 302

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 58  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 111

Query: 63  -GVRL 66
            G  L
Sbjct: 112 RGYVL 116


>gi|257900269|ref|ZP_05679922.1| replication protein E [Enterococcus faecium Com15]
 gi|257838181|gb|EEV63255.1| replication protein E [Enterococcus faecium Com15]
          Length = 242

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 122 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 181

Query: 67  C 67
            
Sbjct: 182 A 182


>gi|257889189|ref|ZP_05668842.1| replication protein E [Enterococcus faecium 1,141,733]
 gi|257825261|gb|EEV52175.1| replication protein E [Enterococcus faecium 1,141,733]
          Length = 449

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 329 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 388

Query: 67  C 67
            
Sbjct: 389 A 389


>gi|257867814|ref|ZP_05647467.1| transcriptional repressor CodY [Enterococcus casseliflavus EC30]
 gi|257874141|ref|ZP_05653794.1| transcriptional repressor CodY [Enterococcus casseliflavus EC10]
 gi|257876706|ref|ZP_05656359.1| transcriptional repressor CodY [Enterococcus casseliflavus EC20]
 gi|257801897|gb|EEV30800.1| transcriptional repressor CodY [Enterococcus casseliflavus EC30]
 gi|257808305|gb|EEV37127.1| transcriptional repressor CodY [Enterococcus casseliflavus EC10]
 gi|257810872|gb|EEV39692.1| transcriptional repressor CodY [Enterococcus casseliflavus EC20]
          Length = 263

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|302561449|ref|ZP_07313791.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302479067|gb|EFL42160.1| DeoR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 346

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
           +A+   +S   + + +  L + G  V    G  GG +L   A+
Sbjct: 25 DLADRLGVSARTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 68


>gi|228960470|ref|ZP_04122121.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229047898|ref|ZP_04193474.1| Transcriptional regulator mntR [Bacillus cereus AH676]
 gi|228723355|gb|EEL74724.1| Transcriptional regulator mntR [Bacillus cereus AH676]
 gi|228799234|gb|EEM46200.1| Transcriptional regulator mntR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 137

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 8  IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTTKGKKIGER 67

Query: 66 L 66
          L
Sbjct: 68 L 68


>gi|227550332|ref|ZP_03980381.1| possible repE protein [Enterococcus faecium TX1330]
 gi|257897424|ref|ZP_05677077.1| replication protein E [Enterococcus faecium Com12]
 gi|227180534|gb|EEI61506.1| possible repE protein [Enterococcus faecium TX1330]
 gi|257833989|gb|EEV60410.1| replication protein E [Enterococcus faecium Com12]
          Length = 291

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 171 MAYISEKSDVYKPYLVTTKKEIRETLGIPERTLDKLLKVLKANQEIFFKIKSGRNGGIQL 230

Query: 67  C 67
            
Sbjct: 231 A 231


>gi|34811006|pdb|1ON2|A Chain A, Bacillus Subtilis Manganese Transport Regulator (Mntr),
          D8m Mutant, Bound To Manganese
 gi|34811007|pdb|1ON2|B Chain B, Bacillus Subtilis Manganese Transport Regulator (Mntr),
          D8m Mutant, Bound To Manganese
          Length = 142

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|86139920|ref|ZP_01058485.1| transcriptional regulator, GntR family protein [Roseobacter sp.
           MED193]
 gi|85823338|gb|EAQ43548.1| transcriptional regulator, GntR family protein [Roseobacter sp.
           MED193]
          Length = 243

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           +      S++A+   +S   + + L+ L    ++ T RG  GG  + R       A Q+T
Sbjct: 31  DQRLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFEDAYAQQVT 90

Query: 75  ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
              ++ +  E  F   C A +     L  +C   SVLR+
Sbjct: 91  TSTLLLSMNEVSFQTACEARYA----LERACAPLSVLRR 125


>gi|331086408|ref|ZP_08335488.1| hypothetical protein HMPREF0987_01791 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406174|gb|EGG85697.1| hypothetical protein HMPREF0987_01791 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 261

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           R+L Y   H   P  I +++E   +S  +L +I +
Sbjct: 163 RILTYINQHIQNPLTIEELSENFYLSPSYLCRIFK 197


>gi|325479714|gb|EGC82804.1| transcriptional regulator, GntR family [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 127

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                D    + +I+++  I++  + K  + L + GI+ET  G  
Sbjct: 27 DLLKDGDKFPSVREISKSLSINQTTVSKAFKELDRLGIIETKPGIG 72


>gi|307544444|ref|YP_003896923.1| RpiR family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307216468|emb|CBV41738.1| transcriptional regulator, RpiR family [Halomonas elongata DSM
          2581]
          Length = 301

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           L KR+ + +  L+  A      + IS +AE   +S   L ++ Q L   G 
Sbjct: 30 RLGKRSRHVLTALVT-APQQAAVSSISDLAERLGVSPSTLSRLAQRLGFEGF 80


>gi|296136487|ref|YP_003643729.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12]
 gi|295796609|gb|ADG31399.1| transcriptional regulator, ArsR family [Thiomonas intermedia K12]
          Length = 245

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLC 67
          R  M  A+ +       ++A    +S       L  L +AG++E   +GR    RL 
Sbjct: 19 RASMLLALGDGRALPAGELAACAGVSAATASGHLGALREAGLLEAKQQGRHRYYRLA 75


>gi|302525847|ref|ZP_07278189.1| histidine utilization repressor [Streptomyces sp. AA4]
 gi|302434742|gb|EFL06558.1| histidine utilization repressor [Streptomyces sp. AA4]
          Length = 265

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 11 IRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R L+   +    P     ++A+   +S L +   +  LV+ G++  VRG+ 
Sbjct: 31 LRRLVERELPPGSPIPSERELAQHYGVSRLTVRSAIGKLVEEGLLARVRGKG 82


>gi|239942417|ref|ZP_04694354.1| GntR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239988882|ref|ZP_04709546.1| GntR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
 gi|291445872|ref|ZP_06585262.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291348819|gb|EFE75723.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 154

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R L       D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 23 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 78


>gi|302527948|ref|ZP_07280290.1| predicted protein [Streptomyces sp. AA4]
 gi|302436843|gb|EFL08659.1| predicted protein [Streptomyces sp. AA4]
          Length = 324

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              P    ++A    +S   +++ ++ L  AGI V    G  GG RL
Sbjct: 14 QARQPRTAEELAARLEVSPRTVYRDIEALSAAGIPVYGEPGHDGGYRL 61


>gi|229918322|ref|YP_002886968.1| GntR family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229469751|gb|ACQ71523.1| transcriptional regulator, GntR family [Exiguobacterium sp. AT1b]
          Length = 129

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++A    I+   + K  Q L + G++E  RGR 
Sbjct: 31 RPGDKVMSVRELATDLVINPNTVSKAYQELERLGLLEMRRGRG 73


>gi|118589447|ref|ZP_01546853.1| predicted transcriptional regulator [Stappia aggregata IAM 12614]
 gi|118438147|gb|EAV44782.1| predicted transcriptional regulator [Stappia aggregata IAM 12614]
          Length = 342

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
             + +AE   +S   +++ +  L+  G+ V+  RG  GG RL 
Sbjct: 20 VPATVLAERFHVSLRTIYRDIDRLIALGVPVDAERGAEGGYRLA 63


>gi|56459794|ref|YP_155075.1| Fic domain-containing protein [Idiomarina loihiensis L2TR]
 gi|56178804|gb|AAV81526.1| Uncharacterized protein containing Fic domain [Idiomarina
           loihiensis L2TR]
          Length = 351

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 4   TKRTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           + +  Y     R ++   ++       +++AE   IS   + K +  L + G++      
Sbjct: 270 SGKGRYSGTSTRNMVLRLLNEQPEWSAARVAEVLNISSRAVEKHISKLKEQGVLIRKGSA 329

Query: 61  RGGVR 65
           RGG  
Sbjct: 330 RGGYW 334


>gi|21221003|ref|NP_626782.1| IclR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|6714758|emb|CAB66222.1| putative IclR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
          Length = 265

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 22 VELLEVLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67


>gi|326317421|ref|YP_004235093.1| GntR domain-containing protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374257|gb|ADX46526.1| GntR domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 272

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--------RRGG 63
           R+L+      D     S+I  A  +S   + + +  L  AG+VET  G        R GG
Sbjct: 48  RILV----PGDKLPTESEIMRAHDVSRTVVREAISRLQAAGLVETRHGIGTFVLQPRAGG 103

Query: 64  -VRLCRPADQITI-LDVVKATE 83
             RL     +++   DV+   E
Sbjct: 104 VFRL--DPSELSTSADVLAVLE 123


>gi|302546525|ref|ZP_07298867.1| DeoR-family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302464143|gb|EFL27236.1| DeoR-family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V +  G  GG RL   A+
Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVHSAPGTAGGYRLSAGAE 68


>gi|239930489|ref|ZP_04687442.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          ghanaensis ATCC 14672]
          Length = 323

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           N      S++A    +S   +++ ++ L  +G+ V   RG  GG RL
Sbjct: 14 QNRGRMTASELAAELEVSVRTVYRDVEALGASGVPVRAERGPEGGYRL 61


>gi|257791618|ref|YP_003182224.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|317487967|ref|ZP_07946550.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|325833209|ref|ZP_08165715.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
 gi|257475515|gb|ACV55835.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|316912916|gb|EFV34442.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|325485591|gb|EGC88059.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
          Length = 126

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++A    I+   + K+ + +  +G++ + RGR 
Sbjct: 32 QPGDQLPTVHEMAVNLNINYNTVNKVYRSMETSGLIMSKRGRG 74


>gi|146338618|ref|YP_001203666.1| IclR family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191424|emb|CAL75429.1| putative Transcriptional regulator, IclR family [Bradyrhizobium
          sp. ORS278]
          Length = 258

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +R+L   A  +    R+  IAEA   S+    ++LQ L   G  E   G+R   RL 
Sbjct: 1  MRLLRVLAEGDPKGLRLKDIAEAAGCSQPTAHRMLQDLAAEGFAEQAAGKR--YRLA 55


>gi|139439961|ref|ZP_01773298.1| Hypothetical protein COLAER_02336 [Collinsella aerofaciens ATCC
          25986]
 gi|133774727|gb|EBA38547.1| Hypothetical protein COLAER_02336 [Collinsella aerofaciens ATCC
          25986]
          Length = 243

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             DY      ++E   +S   +   LQ L + G+V   RGR 
Sbjct: 27 RPGDYLPSERDLSERYGLSRTTVRLALQELERLGLVVRQRGRG 69


>gi|254245873|ref|ZP_04939194.1| regulatory protein, GntR [Burkholderia cenocepacia PC184]
 gi|124870649|gb|EAY62365.1| regulatory protein, GntR [Burkholderia cenocepacia PC184]
          Length = 279

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70
              D     +++  A  +S   + + +  +  +G+VET  G  G           L    
Sbjct: 65  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQTLGIDP 123

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 124 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 169


>gi|160901166|ref|YP_001566748.1| GntR family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366750|gb|ABX38363.1| transcriptional regulator, GntR family [Delftia acidovorans SPH-1]
          Length = 224

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L+  A         + ++E+  IS   L +  + L K G++  V     GV +       
Sbjct: 22  LIDGAWEPGQKLSEASLSESLQISRNTLREAFRLLTKEGLL--VHEPNKGVSVA-APSIA 78

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
           +I+D+ +       + EC A  +   P+  +    S++R+A+ A
Sbjct: 79  SIIDIYRV----RRMVECQALAQAY-PMHPA---RSLMREAVEA 114


>gi|312863977|ref|ZP_07724213.1| transcriptional regulator, MarR family [Streptococcus vestibularis
           F0396]
 gi|311100390|gb|EFQ58597.1| transcriptional regulator, MarR family [Streptococcus vestibularis
           F0396]
          Length = 147

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67
            +LM  A   +     S++A+   +S+  + K ++ LVK G++E  + +  G      L 
Sbjct: 42  HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKGDGRVTYFVLT 98

Query: 68  RPADQI 73
           + A  I
Sbjct: 99  QEAQPI 104


>gi|256393498|ref|YP_003115062.1| MarR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359724|gb|ACU73221.1| transcriptional regulator, MarR family [Catenulispora acidiphila
           DSM 44928]
          Length = 188

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+    +   P  I+++AEA   +   L + +  +  AG+V T  G 
Sbjct: 66  VRELLRL--YRTGPMTITELAEAVDRTHSALSQKVAAMKAAGLVRTTPGP 113


>gi|229057088|ref|ZP_04196480.1| Transcriptional regulator, GntR [Bacillus cereus AH603]
 gi|228720229|gb|EEL71808.1| Transcriptional regulator, GntR [Bacillus cereus AH603]
          Length = 126

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|227495830|ref|ZP_03926141.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
          15434]
 gi|226834625|gb|EEH67008.1| conserved hypothetical protein [Actinomyces urogenitalis DSM
          15434]
          Length = 210

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           L+  A +      +S++     +   FL K +  LV  G V    G   G  + RP   
Sbjct: 22 ALVSLASN---WVSVSELEGQIQV-FSFLRKTVSKLVNCGTVWAGIGVFAGWLMSRP--T 75

Query: 73 ITILDVVKATEESFFV 88
          I+++  V A E +   
Sbjct: 76 ISVVAAVLAAEGTLAF 91


>gi|152976486|ref|YP_001376003.1| regulatory protein GntR HTH [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152025238|gb|ABS23008.1| regulatory protein GntR HTH [Bacillus cytotoxicus NVH 391-98]
          Length = 139

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          N+    + ++A    ++   + K  Q L + GI+ET+RG+ 
Sbjct: 33 NEKLPSVRELASLLIVNPNTVSKAYQDLERQGIIETLRGKG 73


>gi|160879790|ref|YP_001558758.1| helix-turn-helix type 11 domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160428456|gb|ABX42019.1| Helix-turn-helix type 11 domain protein [Clostridium
          phytofermentans ISDg]
          Length = 299

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + Y  ++        ++AE   +S   +++ +  L  AGI V T +G+ GG+ L
Sbjct: 9  ITYLLLNKKS-MTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISL 61


>gi|317404075|gb|EFV84529.1| regulatory protein [Achromobacter xylosoxidans C54]
          Length = 170

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 10 GIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----- 62
           +R L        ++ P  ++ + +A  + +  + +IL  LV AG++  +R   G     
Sbjct: 8  ALRALTLLEQVAGSEAPVSLAALTDATGLPKPSVLRILSRLVDAGML--LREPAGKRYIT 65

Query: 63 GVRLCRPADQ 72
          G RL   A  
Sbjct: 66 GPRLALLARD 75


>gi|307308375|ref|ZP_07588080.1| GntR domain protein [Sinorhizobium meliloti BL225C]
 gi|306901176|gb|EFN31783.1| GntR domain protein [Sinorhizobium meliloti BL225C]
          Length = 248

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 3  LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          LT RT   ++  +        D    +S++A+   +S   + + +  L   G+VE   G 
Sbjct: 4  LTSRTIQALKAHIIEGQLDKGDKLGSLSELAQKFGVSRTVIREAVSALRSDGVVEARHGV 63

Query: 61 R 61
           
Sbjct: 64 G 64


>gi|291460186|ref|ZP_06599576.1| putative transcriptional regulator [Oribacterium sp. oral taxon
          078 str. F0262]
 gi|291417133|gb|EFE90852.1| putative transcriptional regulator [Oribacterium sp. oral taxon
          078 str. F0262]
          Length = 306

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVV 79
           +      ++AE   +S+  + + ++ L KAGI + T +G  GG         I+I+D  
Sbjct: 15 QEEKTTAPELAERFEVSKRTINRDIEDLCKAGIPIRTAQGTGGG---------ISIMDGY 65

Query: 80 K 80
          +
Sbjct: 66 R 66


>gi|289771719|ref|ZP_06531097.1| IclR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|289701918|gb|EFD69347.1| IclR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 265

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 22 VELLEVLAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67


>gi|271966594|ref|YP_003340790.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270509769|gb|ACZ88047.1| putative transcriptional regulator, ArsR family [Streptosporangium
           roseum DSM 43021]
          Length = 315

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D P   +++A    +S   + + L  L  AG+V   R
Sbjct: 257 DAPASTTELARRTGLSPAGVSQYLTALRDAGLVSAHR 293


>gi|212223724|ref|YP_002306960.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
 gi|212008681|gb|ACJ16063.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
          Length = 282

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           R L+Y           +++ EA  + +   +++ + L + G+V+ ++GR+
Sbjct: 226 RALLYI-FDKGGRASQAEVREAIGLPKTTAWRMFKRLERKGLVKVIKGRK 274


>gi|162451495|ref|YP_001613862.1| GntR family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
 gi|161162077|emb|CAN93382.1| GntR-family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
          Length = 479

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 11 IRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +R L+  A          I Q+A    +S   +      LV AG++E+ RG  G
Sbjct: 20 LRALIEGARLPPGARLTSIRQLAGQLGVSPNTVVTAYDRLVAAGLLES-RGTAG 72


>gi|323464903|gb|ADX77056.1| protein RepR, truncated [Staphylococcus pseudintermedius ED99]
          Length = 270

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 150 MAYISEKSDVYKPYLATTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 209

Query: 67  C 67
            
Sbjct: 210 A 210


>gi|304398292|ref|ZP_07380166.1| transcriptional regulator, IclR family [Pantoea sp. aB]
 gi|304354158|gb|EFM18531.1| transcriptional regulator, IclR family [Pantoea sp. aB]
          Length = 259

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            ++L            + +IA+A  +    + +I+  L  A +V +     GG+RL 
Sbjct: 22 AAKILNALGEQPGG-MSLGEIAQAVELPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76


>gi|302188054|ref|ZP_07264727.1| regulatory protein GntR HTH [Pseudomonas syringae pv. syringae
          642]
          Length = 250

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGG----- 63
          +R  +      D      +  +A    ++   L + L  L   G+V+T  GR GG     
Sbjct: 19 LRTAIDLGFFEDGEMLPKEAVLARELHVTAFTLREALAELRSEGLVDTKPGRGGGTFVQH 78

Query: 64 -VRLCRPADQITILDV 78
            R+     +I + ++
Sbjct: 79 TSRVAHDKAEIRLREL 94


>gi|257869689|ref|ZP_05649342.1| transcriptional repressor CodY [Enterococcus gallinarum EG2]
 gi|257803853|gb|EEV32675.1| transcriptional repressor CodY [Enterococcus gallinarum EG2]
          Length = 263

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|253574024|ref|ZP_04851366.1| trehalose operon repressor [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251846501|gb|EES74507.1| trehalose operon repressor [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 240

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 16 YCAIHND--YPNRISQIA------------EACCISELFLFKILQPLVKAGIVETVRGRR 61
          Y AIHND        +IA            E    S   + K L  L + G ++ V+G+ 
Sbjct: 5  YLAIHNDIARQIEAGEIAPHSLLPSEHELKERYNTSRETIRKALTLLAQNGYIQKVQGKG 64


>gi|161504367|ref|YP_001571479.1| hypothetical protein SARI_02478 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865714|gb|ABX22337.1| hypothetical protein SARI_02478 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 566

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62
            +S++AE C  SE  L  +L+   +AG ++    + RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLKWEAQSGRGKRG 65


>gi|78188061|ref|YP_378399.1| biotin--acetyl-CoA-carboxylase ligase [Chlorobium chlorochromatii
          CaD3]
 gi|78170260|gb|ABB27356.1| Biotin--acetyl-CoA-carboxylase ligase [Chlorobium chlorochromatii
          CaD3]
          Length = 327

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          VL + ++   +    S++++   +S   ++K +  L   G  +E V GR  G RL
Sbjct: 8  VLHHLSVAAPHFVSGSELSQLLNVSATAIWKHITQLRHEGYAIEAVTGR--GYRL 60


>gi|48478526|ref|YP_024232.1| transcriptional regulator [Picrophilus torridus DSM 9790]
 gi|48431174|gb|AAT44039.1| transcriptional regulator [Picrophilus torridus DSM 9790]
          Length = 343

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 3  LTKR--TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          LTK   ++Y IRV  Y  +  + P   + + +   I +  ++ I   L K G+V    G 
Sbjct: 13 LTKFNLSNYAIRV--YKCLLLNGPMPATDVVKETGIPQPRVYDIFSLLEKKGLVSVSSGL 70

Query: 61 RGGVRLCRPADQ 72
          R  + +  P  +
Sbjct: 71 R-KIYMAVPPKE 81


>gi|10956204|ref|NP_044463.1| RepR [Streptococcus agalactiae]
 gi|10956210|ref|NP_053002.1| hypothetical protein [Streptococcus agalactiae]
 gi|132370|sp|P18629|REPR_STRAG RecName: Full=Protein repR
 gi|46641|emb|CAA35647.1| unnamed protein product [Streptococcus agalactiae]
 gi|511075|emb|CAA50899.1| repR [Streptococcus agalactiae]
 gi|1857520|gb|AAB48451.1| RepR [Streptococcus agalactiae]
 gi|30267508|gb|AAP21695.1| RepR [Expression vector pDAS112]
 gi|37496518|emb|CAD50593.1| RepR protein [Cloning vector pUvBBAC]
          Length = 496

 Score = 36.5 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I E   I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLATTKKEIREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|325922964|ref|ZP_08184674.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas gardneri ATCC 19865]
 gi|325546545|gb|EGD17689.1| beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR
           family [Xanthomonas gardneri ATCC 19865]
          Length = 286

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|325570908|ref|ZP_08146557.1| transcriptional regulator CodY [Enterococcus casseliflavus ATCC
           12755]
 gi|325156312|gb|EGC68495.1| transcriptional regulator CodY [Enterococcus casseliflavus ATCC
           12755]
          Length = 263

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALEGDEGRLTASSIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|315185693|gb|EFU19460.1| transcriptional regulator, AraC family [Spirochaeta thermophila DSM
           6578]
          Length = 318

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M     +    R+L Y   H      +S++AE   +   +L +      K G+
Sbjct: 178 MRY--FSRVA-RILKYLDTHYMDRISLSELAEREGVHPSYLSRFFHE--KVGL 225


>gi|320009474|gb|ADW04324.1| transcriptional regulator, GntR family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 136

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R L       D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 22 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 77


>gi|239930388|ref|ZP_04687341.1| GntR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291438744|ref|ZP_06578134.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291341639|gb|EFE68595.1| GntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 150

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R L    +  D      ++ EA  ++   + K  + L + G+VE  RG
Sbjct: 17 QIVQQTKQALR-LGEL-VPGDKLPTAREVVEATAVNPNTVLKAYRELEREGLVEARRG 72


>gi|269838401|ref|YP_003320629.1| Helix-turn-helix type 11 domain-containing protein [Sphaerobacter
          thermophilus DSM 20745]
 gi|269787664|gb|ACZ39807.1| Helix-turn-helix type 11 domain protein [Sphaerobacter
          thermophilus DSM 20745]
          Length = 323

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
              ++AE   +S   + + ++ L  AG+ V   RG RGG  L    D   
Sbjct: 19 MTARELAERLEVSPRTIQRDMEALSMAGVPVYAERGARGGWVL---PDDYR 66


>gi|254488156|ref|ZP_05101361.1| phosphonates metabolism transcriptional regulator PhnF
          [Roseobacter sp. GAI101]
 gi|214045025|gb|EEB85663.1| phosphonates metabolism transcriptional regulator PhnF
          [Roseobacter sp. GAI101]
          Length = 237

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     + +A    ++   +   L  L + G+V   RG   GV +        I   V+
Sbjct: 27 GDKLPTEAVLAARFGVNRHTVRNALAHLAQDGLVHARRGA--GVFVTMTPTDYPIGRRVR 84


>gi|254439619|ref|ZP_05053113.1| transcriptional regulator, GntR family protein [Octadecabacter
           antarcticus 307]
 gi|198255065|gb|EDY79379.1| transcriptional regulator, GntR family protein [Octadecabacter
           antarcticus 307]
          Length = 242

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           ++     ++++E   +S   + + L+ L    ++ T RG  GG  + R         QIT
Sbjct: 27  DERLPSEAELSEQFAVSRSTVREALKRLAAQSLIRTQRGATGGAFVNRLTFEQAYGQQIT 86

Query: 75  ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118
              ++ +  +  F   C   FA  +   PL         L       
Sbjct: 87  TSALLLSMNDVDFDTACEARFALERACAPLSAQRRTADHLATMRAEI 133


>gi|184155876|ref|YP_001844216.1| transcriptional regulator [Lactobacillus fermentum IFO 3956]
 gi|227513960|ref|ZP_03944009.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|260662865|ref|ZP_05863759.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|183227220|dbj|BAG27736.1| transcriptional regulator [Lactobacillus fermentum IFO 3956]
 gi|227087671|gb|EEI22983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552946|gb|EEX25945.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 125

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D     +Q++ +  I+   + K +  LV  G++E  RGR 
Sbjct: 29 QAGDQVPSTTQLSASLNINPATVLKGMNQLVALGLLEKRRGRG 71


>gi|154499764|ref|ZP_02037802.1| hypothetical protein BACCAP_03421 [Bacteroides capillosus ATCC
           29799]
 gi|150271362|gb|EDM98619.1| hypothetical protein BACCAP_03421 [Bacteroides capillosus ATCC
           29799]
          Length = 143

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 13  VLMYCAIHNDYPNRISQI-----AEACCISELFLFKILQPLVK---AGIVETVRGRRGGV 64
           +L+  A          QI     A+    S   +  ++  L +   AGI+ETVRG   G 
Sbjct: 81  ILLLLARRPGQVFSARQIYEAVAADTYDASWTGISSMVYKLRRKLGAGIIETVRGH--GY 138

Query: 65  R 65
           R
Sbjct: 139 R 139


>gi|150399812|ref|YP_001323579.1| signal transduction protein [Methanococcus vannielii SB]
 gi|150012515|gb|ABR54967.1| putative signal transduction protein with CBS domains
          [Methanococcus vannielii SB]
          Length = 303

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LLQIYKEKNKAVKGTEIAVRLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64


>gi|52079232|ref|YP_078023.1| GntR family transcriptional regulator [Bacillus licheniformis
          ATCC 14580]
 gi|52784597|ref|YP_090426.1| TreR [Bacillus licheniformis ATCC 14580]
 gi|319646989|ref|ZP_08001215.1| TreR protein [Bacillus sp. BT1B_CT2]
 gi|52002443|gb|AAU22385.1| transcriptional regulator (GntR family) [Bacillus licheniformis
          ATCC 14580]
 gi|52347099|gb|AAU39733.1| TreR [Bacillus licheniformis ATCC 14580]
 gi|317390813|gb|EFV71614.1| TreR protein [Bacillus sp. BT1B_CT2]
          Length = 238

 Score = 36.1 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 1  MHLTKRTDYGIRVLMY--CAIH--------NDYPNRISQIAEACCISELFLFKILQPLVK 50
          M + K       +++Y   A           D     + +AE    S   + K L  L +
Sbjct: 1  MKINKY------MMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQ 54

Query: 51 AGIVETVRGRR 61
           G ++ ++G+ 
Sbjct: 55 NGYIQKIKGKG 65


>gi|253574432|ref|ZP_04851773.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251846137|gb|EES74144.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 320

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          R++ +   ++      + ++A+   +S   + + LQ L + G+ + +  G  GG +
Sbjct: 6  RLMELMMTVNRKRRFTVKELAQEFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQ 61


>gi|229168948|ref|ZP_04296665.1| Transcriptional regulator mntR [Bacillus cereus AH621]
 gi|228614540|gb|EEK71648.1| Transcriptional regulator mntR [Bacillus cereus AH621]
          Length = 137

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 8  IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 67

Query: 66 L 66
          L
Sbjct: 68 L 68


>gi|251795907|ref|YP_003010638.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543533|gb|ACT00552.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L+  A+  D       IA    I+   + K  + +   G V T 
Sbjct: 29 RILLKWAVSGDKLPSRRDIAMQLNINPNTVQKAFKLMEDEGYVRTS 74


>gi|160934705|ref|ZP_02082091.1| hypothetical protein CLOLEP_03580 [Clostridium leptum DSM 753]
 gi|156866158|gb|EDO59530.1| hypothetical protein CLOLEP_03580 [Clostridium leptum DSM 753]
          Length = 304

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          ++Y  +        S +A    +S   +++ ++ L  AGI +   +GR GG+RL
Sbjct: 9  ILYL-LMEGETVTASALARRLEVSPRTIYRDVEALSGAGIPIYMTKGRGGGIRL 61


>gi|323358764|ref|YP_004225160.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275135|dbj|BAJ75280.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 131

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVRLCR 68
          +++L+  A   +    +SQI  A  +S+  + K L+ L +A +V TVR  G+     L  
Sbjct: 17 LQLLLDRATGGERGTSVSQIVSALGVSQPTVSKHLKVLREAQLV-TVREEGQHRYYSLAV 75

Query: 69 PADQ 72
              
Sbjct: 76 APLD 79


>gi|308187669|ref|YP_003931800.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1]
 gi|308058179|gb|ADO10351.1| HTH-type transcriptional regulator yiaJ [Pantoea vagans C9-1]
          Length = 261

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            ++L            + +IA+A  +    + +I+  L  A +V +     GG+RL 
Sbjct: 22 AAKILNALGEQPGG-MSLGEIAQAVELPRSTVQRIVAALDSAELVRSS--GAGGLRLG 76


>gi|254819966|ref|ZP_05224967.1| regulatory protein GntR, HTH [Mycobacterium intracellulare ATCC
          13950]
          Length = 236

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73
          S++ E   +S   L +  + L    +++  RG RGG R+ RP  +              +
Sbjct: 28 SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 87

Query: 74 TILDVVKA 81
          T+ DV  A
Sbjct: 88 TVKDVYDA 95


>gi|297567239|ref|YP_003686211.1| MarR family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296851688|gb|ADH64703.1| transcriptional regulator, MarR family [Meiothermus silvanus DSM
          9946]
          Length = 208

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +L   A   D   R+ +IAEA  I+       ++ LV  G+V   RG  
Sbjct: 46 ILTLLAQKGDR--RLGEIAEALGITPATASDAVKVLVAKGLVVKNRGPG 92


>gi|118467208|ref|YP_881752.1| GntR family transcriptional regulator [Mycobacterium avium 104]
 gi|118168495|gb|ABK69392.1| regulatory protein GntR, HTH [Mycobacterium avium 104]
          Length = 246

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73
           S++ E   +S   L +  + L    +++  RG RGG R+ RP  +              +
Sbjct: 38  SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97

Query: 74  TILDVVKA 81
           T+ DV  A
Sbjct: 98  TVKDVYDA 105


>gi|313905620|ref|ZP_07838982.1| transcriptional regulator, GntR family [Eubacterium
          cellulosolvens 6]
 gi|313469567|gb|EFR64907.1| transcriptional regulator, GntR family [Eubacterium
          cellulosolvens 6]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             +    + ++A    ++   + K L  L + G+V++ R
Sbjct: 29 RPGERLPSVRELAMDAAVNPNTMQKALAELERTGLVKSQR 68


>gi|312131035|ref|YP_003998375.1| transcriptional regulator, gntr family [Leadbetterella byssophila
          DSM 17132]
 gi|311907581|gb|ADQ18022.1| transcriptional regulator, GntR family [Leadbetterella byssophila
          DSM 17132]
          Length = 338

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    I++++    IS L + K  + L K GI+E  +G+ 
Sbjct: 34 QQGDSMPSINELSFQTDISRLTVEKSYKELRKLGILEAFQGKG 76


>gi|153938156|ref|YP_001391477.1| GntR family transcriptional regulator [Clostridium botulinum F
          str. Langeland]
 gi|152934052|gb|ABS39550.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum F str. Langeland]
 gi|295319502|gb|ADF99879.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum F str. 230613]
          Length = 497

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLKQNGLVTTIQGKG 73


>gi|110833229|ref|YP_692088.1| biotin-[acetyl-CoA-carboxylase] ligase [Alcanivorax borkumensis
          SK2]
 gi|110646340|emb|CAL15816.1| biotin-[acetyl-CoA-carboxylase] ligase [Alcanivorax borkumensis
          SK2]
          Length = 326

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
           L+   + +      S++ +   IS   ++K ++ L   G+ +E+V+G+  G RL +P +
Sbjct: 13 ALVRL-LSDGSFRSGSELGDELGISRAGVWKRVRRLTDFGLALESVKGK--GYRLAQPLE 69

Query: 72 QITILDVVK 80
           I   D+V+
Sbjct: 70 LIDP-DIVR 77


>gi|15615370|ref|NP_243673.1| manganese transport transcriptional regulator [Bacillus
          halodurans C-125]
 gi|20455069|sp|Q9K943|MNTR_BACHD RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|10175428|dbj|BAB06526.1| transcriptional regulator [Bacillus halodurans C-125]
          Length = 139

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K+         G++ T +G++ G R
Sbjct: 13 IYLLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLILTAKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|146279508|ref|YP_001169666.1| putative signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557749|gb|ABP72361.1| putative signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 243

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 14  LMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           L+       Y   +SQ  +A+A  +S + + ++L+ L +AG++   +GR
Sbjct: 167 LVGLGTQEGYACPLSQYLLADALGLSAVHINRVLRELREAGLMSFQKGR 215


>gi|116493387|ref|YP_805122.1| transcriptional regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103537|gb|ABJ68680.1| Transcriptional regulator [Pediococcus pentosaceus ATCC 25745]
          Length = 199

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +TD  +  L   A   +      +I+E   I    + +I++ L KAG V
Sbjct: 28 KTDNALETLKLLA--KETNVTPGRISEYLDIKPSSVTQIIKKLEKAGTV 74


>gi|317403940|gb|EFV84408.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          +L+      + P    ++AE   +S     + LQ L +AG V T R G+    RL    
Sbjct: 28 ILLEHIAQGERPV--ERLAELSGLSVANASQHLQQLRRAGFVVTRREGKHVYYRLGSAP 84


>gi|256787834|ref|ZP_05526265.1| IclR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 244

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 7  LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 46


>gi|297203712|ref|ZP_06921109.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|297148482|gb|EDY55795.2| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 257

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            L+  A+ +  P  ++ ++E   +S   + + L  L + G++  V G
Sbjct: 10 HQLILRALRSGGPASVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHG 57


>gi|163744310|ref|ZP_02151670.1| Predicted transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
 gi|161381128|gb|EDQ05537.1| Predicted transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
          Length = 101

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               +  +A+ C +S+  + + L+ L +AG+V++ R
Sbjct: 36 GGERSVGDLAQVCGLSQSTMSQQLKKLKEAGLVDSRR 72


>gi|119899455|ref|YP_934668.1| exoribonuclease II [Azoarcus sp. BH72]
 gi|288559235|sp|A1KAC6|Y3165_AZOSB RecName: Full=UPF0761 membrane protein azo3165
 gi|119671868|emb|CAL95782.1| exoribonuclease II [Azoarcus sp. BH72]
          Length = 408

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 10  GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            + +L   A   ++  P   + +     ++E     +L+ L + GI    R   G   L 
Sbjct: 286 AVEMLAALAEAQYDGRPVGFAALRRRTNLAEHAAEALLESLRECGI--ASRTEGGDWVLT 343

Query: 68  RPADQITILDVVK 80
           R A  I +  V++
Sbjct: 344 RAASDIRLSAVLQ 356


>gi|148255432|ref|YP_001240017.1| AsnC family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407605|gb|ABQ36111.1| transcriptional regulator, AsnC family [Bradyrhizobium sp. BTAi1]
          Length = 162

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L       D   R++++A+   IS+    + ++ L   G+++++R
Sbjct: 13 RILAEL--QADGRIRVNELADRVGISQPNCLRRVRTLRSRGVIKSIR 57


>gi|116662433|ref|YP_829486.1| ArsR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116613212|gb|ABK05905.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24]
          Length = 125

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 11 IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          +R+L            +  P  ++++A+A       + + L  L  +G+V+T + GR 
Sbjct: 36 LRMLAEPTRLHLLWQLSTGPKTVTELADASGAPRTVVSQHLAKLRLSGLVDTRKDGRH 93


>gi|313884947|ref|ZP_07818699.1| transcriptional regulator, MarR family [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619638|gb|EFR31075.1| transcriptional regulator, MarR family [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 145

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           V+ Y   H         I     IS+    +++Q + + G +E V
Sbjct: 23 HVVSYLGQHQAEDVFQKDIEAELEISKSVASQLVQRMERNGFIEVV 68


>gi|228980888|ref|ZP_04141192.1| Transcriptional regulator mntR [Bacillus thuringiensis Bt407]
 gi|228778824|gb|EEM27087.1| Transcriptional regulator mntR [Bacillus thuringiensis Bt407]
          Length = 137

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 8  IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGER 67

Query: 66 L 66
          L
Sbjct: 68 L 68


>gi|54025176|ref|YP_119418.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016684|dbj|BAD58054.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 156

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
             +Y +  L Y A   D     +++A     S+  L   +  + K G+VE
Sbjct: 40 TYVEYSV--LAYLAEPEDNRLTFAELAAKLEWSQSRLSHQITRMNKRGLVE 88


>gi|163939269|ref|YP_001644153.1| GntR family transcriptional regulator [Bacillus
          weihenstephanensis KBAB4]
 gi|163861466|gb|ABY42525.1| transcriptional regulator, GntR family [Bacillus
          weihenstephanensis KBAB4]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|322372051|ref|ZP_08046593.1| transcriptional regulator, TrmB [Haladaptatus paucihalophilus
          DX253]
 gi|320548473|gb|EFW90145.1| transcriptional regulator, TrmB [Haladaptatus paucihalophilus
          DX253]
          Length = 745

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +Y A+       +++I+E+  + +  ++  +  L   G VE +
Sbjct: 29 VYLALIRGGKQSMTEISESSGVPKQRVYDTVSDLRNEGFVEVI 71


>gi|32265665|ref|NP_859697.1| hypothetical protein HH0166 [Helicobacter hepaticus ATCC 51449]
 gi|32261713|gb|AAP76763.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 150

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12  RVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           R+L Y   H          QIA+   IS   L + L+ L   GI+ T +G+
Sbjct: 96  RLLAYLKNHKALLPTQTQRQIAQNLNISPESLSRTLKILKSKGILATTKGK 146


>gi|51245768|ref|YP_065652.1| transcriptional regulator [Desulfotalea psychrophila LSv54]
 gi|50876805|emb|CAG36645.1| related to transcriptional regulator [Desulfotalea psychrophila
          LSv54]
          Length = 271

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            ++E   +S+  L + +  L   G+V   +G  GGV +CR
Sbjct: 47 KDLSELFEVSKQTLRETINALEYMGLVTRKKGPGGGVYICR 87


>gi|323700153|ref|ZP_08112065.1| transcriptional regulator, AraC family [Desulfovibrio sp. ND132]
 gi|323460085|gb|EGB15950.1| transcriptional regulator, AraC family [Desulfovibrio desulfuricans
           ND132]
          Length = 284

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 10  GIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQ 46
            +R +  Y A H      + ++AEA  +S   L ++ Q
Sbjct: 182 AVRAVRDYLAAHLAEKVSLDELAEAASLSRCHLLRVFQ 219


>gi|323141553|ref|ZP_08076438.1| biotin--[acetyl-CoA-carboxylase] ligase [Phascolarctobacterium
          sp. YIT 12067]
 gi|322413965|gb|EFY04799.1| biotin--[acetyl-CoA-carboxylase] ligase [Phascolarctobacterium
          sp. YIT 12067]
          Length = 335

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          R+L         P    +I++   +S   ++K +Q L   G  +E+V   + G  L    
Sbjct: 7  RILELLRNSKGTPVSGEEISKELEVSRTAIWKHIQALKNEGYEIESV--PKRGYILREVP 64

Query: 71 D 71
          D
Sbjct: 65 D 65


>gi|322517557|ref|ZP_08070426.1| adc operon repressor AdcR [Streptococcus vestibularis ATCC 49124]
 gi|322123817|gb|EFX95391.1| adc operon repressor AdcR [Streptococcus vestibularis ATCC 49124]
          Length = 151

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67
            +LM  A   +     S++A+   +S+  + K ++ LVK G++E  + +  G      L 
Sbjct: 46  HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKGDGRVTYFVLT 102

Query: 68  RPADQI 73
           + A  I
Sbjct: 103 QEAQPI 108


>gi|300813652|ref|ZP_07093974.1| biotin--[acetyl-CoA-carboxylase] ligase [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512194|gb|EFK39372.1| biotin--[acetyl-CoA-carboxylase] ligase [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 327

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCRP 69
          VL     +        ++A+   IS   ++K +  L   G +   +T RG     +L   
Sbjct: 7  VLQELEKNRGRYISGQELADRLKISRTAIWKAINALKSDGFIIDSQTKRG----YKLDDA 62

Query: 70 ADQITI 75
          +D I++
Sbjct: 63 SDMISV 68


>gi|258512837|ref|YP_003186271.1| transcriptional regulator, MarR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479563|gb|ACV59882.1| transcriptional regulator, MarR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 112

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A   +       ++E   + +  L   ++ L + G+VE  R
Sbjct: 25 LRILRALA---EGEQTAGALSERLGVRQNTLSHHMRQLREHGLVEVRR 69


>gi|269839197|ref|YP_003323889.1| hypothetical protein Tter_2166 [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269790927|gb|ACZ43067.1| Helix-turn-helix type 11 domain protein [Thermobaculum terrenum
          ATCC BAA-798]
          Length = 320

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                ++AE   +SE  + + ++ L  AG+ +   RG  GG  L
Sbjct: 17 GKVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWAL 61


>gi|226363475|ref|YP_002781257.1| ArsR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226241964|dbj|BAH52312.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 119

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           ++++      +        +A    +SE  +   L  L KAG+V++VR         RP
Sbjct: 45  LKLMSILLTASGGEVCTCDLATGVGLSESTVSHHLGQLKKAGMVQSVRRGMNVFYGARP 103


>gi|190894750|ref|YP_001985043.1| ArsR family transcriptional regulator(repressor of nodulation
          genes) [Rhizobium etli CIAT 652]
 gi|218515281|ref|ZP_03512121.1| transcriptional regulator protein (repressor of nodulation
          genes), ArsR family [Rhizobium etli 8C-3]
 gi|190700411|gb|ACE94493.1| transcriptional regulator protein (repressor of nodulation
          genes), ArsR family [Rhizobium etli CIAT 652]
          Length = 130

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + +L       +    ++ +A+   +S+    + L  L + G+V+T R
Sbjct: 43 LHILHLL---TEGEVSVTDLADEVGLSQSSTSQHLAILREHGLVQTRR 87


>gi|169828566|ref|YP_001698724.1| hypothetical protein Bsph_3081 [Lysinibacillus sphaericus C3-41]
 gi|168993054|gb|ACA40594.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 314

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          +L++ +          +IA+A  IS   + + L  L   G+ +   +GR GG 
Sbjct: 10 ILLFVSAKKQ--FTAQEIADAFNISVRTVHRYLLDLSDMGLPIYAEQGRNGGY 60


>gi|167757082|ref|ZP_02429209.1| hypothetical protein CLORAM_02631 [Clostridium ramosum DSM 1402]
 gi|237735847|ref|ZP_04566328.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|167703257|gb|EDS17836.1| hypothetical protein CLORAM_02631 [Clostridium ramosum DSM 1402]
 gi|229381592|gb|EEO31683.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 118

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +       + ++A    ++   + K L  L + GI+ + R
Sbjct: 29 LPGSKLASVRELALEYGVNPNTIQKALSELERTGIIYSRR 68


>gi|126651686|ref|ZP_01723889.1| hypothetical protein BB14905_13775 [Bacillus sp. B14905]
 gi|126591635|gb|EAZ85741.1| hypothetical protein BB14905_13775 [Bacillus sp. B14905]
          Length = 314

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          +L++ +          +IA+A  IS   + + L  L   G+ +   +GR GG 
Sbjct: 10 ILLFVSAKKQ--FTAQEIADAFNISVRTVHRYLLDLSDMGLPIYAEQGRNGGY 60


>gi|158520031|ref|YP_001527901.1| putative ribonuclease BN [Desulfococcus oleovorans Hxd3]
 gi|158508857|gb|ABW65824.1| putative ribonuclease BN [Desulfococcus oleovorans Hxd3]
          Length = 450

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 9   YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG- 63
           YG+    +L+    + + P    QI+    +    + ++L+ L  AG+  +T+ G  G  
Sbjct: 329 YGLYVAHLLVKTFKNGEPPLTADQISARLDLPIRMVNRLLETLSAAGLATQTLSGTGGDP 388

Query: 64  -VRLCRPADQITILDVVKATE 83
             +  R    ITI    +A +
Sbjct: 389 AWQPGRDITDITIASATEAMD 409


>gi|75675087|ref|YP_317508.1| ArsR family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74419957|gb|ABA04156.1| transcriptional regulator, ArsR family [Nitrobacter winogradskyi
          Nb-255]
          Length = 131

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM  ++  +    +++I  A  I +  L + L  L KA +V T R
Sbjct: 27 LMILSLLREGEKSVTEIDAATGIGQPALSQQLAELRKAELVTTRR 71


>gi|39935334|ref|NP_947610.1| hypothetical protein RPA2265 [Rhodopseudomonas palustris CGA009]
 gi|39649186|emb|CAE27706.1| conserved hypothetical protein [Rhodopseudomonas palustris
          CGA009]
          Length = 331

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            R+L     +         ++AEAC +S   +++ +  L  +G+ V   RG  GG RL
Sbjct: 8  ASRMLSILTTLQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 66


>gi|324998220|ref|ZP_08119332.1| transcriptional regulator-like protein [Pseudonocardia sp. P1]
          Length = 161

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL   +       ++ ++A  C +S+  + +I+  L K G+VE
Sbjct: 49 VLSRLSAAPGRRMQMQELARRCFVSKSGISQIVTQLAKDGLVE 91


>gi|307328923|ref|ZP_07608092.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306885433|gb|EFN16450.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 319

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            + +A+   ++   + + +  L + G  V +  G  GG +L 
Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVHSAPGTGGGYQLG 64


>gi|304437118|ref|ZP_07397080.1| two component system response regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369877|gb|EFM23540.1| two component system response regulator [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 254

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 9   YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y +  + +   H   P  + ++A    +S  +L K+   
Sbjct: 152 YLLHAVRHIEAHMAEPITVREVAGELGLSVSYLHKLFAR 190


>gi|296877266|ref|ZP_06901306.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431786|gb|EFH17593.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis ATCC 15912]
          Length = 228

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           H + +       L +C  +     +++Q+A    IS   L ++++ +++ G+V+
Sbjct: 148 HYSVKERLATHFLEHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 201


>gi|227486313|ref|ZP_03916629.1| possible transcriptional regulator [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227235724|gb|EEI85739.1| possible transcriptional regulator [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 124

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M + ++T   I    Y   + D    + ++++   I++  + K  + L   GI++T  G 
Sbjct: 14 MQIVEQTKVAI-AAGYL-QNGDKFPSVRELSKELLINQTTVSKAFKELSSQGIIKTQPGI 71

Query: 61 RGGVRLCRPADQITILDVVKATEESFF 87
             + L      I   + +   EE   
Sbjct: 72 GTVIELNSEKIDIKRDEFIDKLEEDLS 98


>gi|182435540|ref|YP_001823259.1| ArsR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178464056|dbj|BAG18576.1| putative ArsR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 133

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94


>gi|73541002|ref|YP_295522.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118415|gb|AAZ60678.1| transcriptional regulator, GntR family [Ralstonia eutropha
          JMP134]
          Length = 240

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71
                  Q+A+   +S   + ++ + L   G+VET +G            G +L R  D
Sbjct: 28 GSRLPTGRQLADQYGVSAAVIREVTEHLRSQGLVETRQGVGCTVRSRTGSAGFQLPREPD 87


>gi|154245643|ref|YP_001416601.1| GntR domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154159728|gb|ABS66944.1| GntR domain protein [Xanthobacter autotrophicus Py2]
          Length = 513

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 8   DYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +R+L   A              QIAE   +S + +   L+ L  AG + +++G  
Sbjct: 45  RLAVRLLTLMASGRLPPGARLPPERQIAETVSVSRVCVRTALERLKSAGYLRSIQGSG 102


>gi|88854536|ref|ZP_01129203.1| putative GntR-family transcriptional regulator [marine
          actinobacterium PHSC20C1]
 gi|88816344|gb|EAR26199.1| putative GntR-family transcriptional regulator [marine
          actinobacterium PHSC20C1]
          Length = 247

 Score = 36.1 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
               +      ++A    +S   +   +  L  AG + + RGR GG
Sbjct: 37 LVGPGERLPAERELATMLAVSRDTVRDAIASLSDAGYLVSRRGRYGG 83


>gi|332522546|ref|ZP_08398798.1| transcriptional regulator, MarR family [Streptococcus porcinus
          str. Jelinkova 176]
 gi|332313810|gb|EGJ26795.1| transcriptional regulator, MarR family [Streptococcus porcinus
          str. Jelinkova 176]
          Length = 150

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           VL++ + + +    +  I     IS+     +++ + K G +E +
Sbjct: 37 HVLIFLSRNFERELFVKDIETELGISKSVASNLVKRMEKNGFIEVI 82


>gi|320531166|ref|ZP_08032156.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 171 str. F0337]
 gi|320136615|gb|EFW28573.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 171 str. F0337]
          Length = 143

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          TDY  R L   +  +D+  RIS +A    +++    +++  L   G+V 
Sbjct: 35 TDY--RALALLSRASDHELRISDLAVRVGLNQSSTTRLVGRLELKGLVT 81


>gi|288553351|ref|YP_003425286.1| manganese transport transcriptional regulator [Bacillus
          pseudofirmus OF4]
 gi|288544511|gb|ADC48394.1| manganese transport transcriptional regulator [Bacillus
          pseudofirmus OF4]
          Length = 140

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I +    R+S IAEA  +    + K++Q L K+         G+V T +G++ G R
Sbjct: 13 IYILIEDKGYARVSDIAEALEVHPSSVTKMVQKLDKSEYLIYERYRGLVLTAKGKKVGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|229822189|ref|YP_002883715.1| IclR family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229568102|gb|ACQ81953.1| transcriptional regulator, IclR family [Beutenbergia cavernae DSM
          12333]
          Length = 257

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++     +  P  +++I+    + +  L K+L  L + G V+T
Sbjct: 24 VLELLAQSPEPLTMTEISRRLSVPKSSLHKLLGTLERRGWVQT 66


>gi|91773442|ref|YP_566134.1| iron dependent repressor [Methanococcoides burtonii DSM 6242]
 gi|91712457|gb|ABE52384.1| iron dependent repressor [Methanococcoides burtonii DSM 6242]
          Length = 143

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1  MHLTK-RT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M+LT  RT DY ++  +   I     + +  IA    +S   +  + + L K G +    
Sbjct: 1  MYLTTERTEDY-LKA-IDTIIEKKGYSLVKDIARFLDVSPSSVTGMFKKLTKEGFINCE- 57

Query: 59 GRRGGVRLCRPADQ 72
           + GGV L     +
Sbjct: 58 -KYGGVTLAPDGRK 70


>gi|328946034|gb|EGG40180.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1087]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|325696613|gb|EGD38502.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK160]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|325687938|gb|EGD29958.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK72]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|324990825|gb|EGC22760.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK353]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|323351731|ref|ZP_08087385.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          VMC66]
 gi|322122217|gb|EFX93943.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          VMC66]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K +Q L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIQKLEKEGIQIESVKNR--GYRLT 59


>gi|326778367|ref|ZP_08237632.1| transcriptional regulator, GntR family [Streptomyces cf. griseus
          XylebKG-1]
 gi|326658700|gb|EGE43546.1| transcriptional regulator, GntR family [Streptomyces cf. griseus
          XylebKG-1]
          Length = 138

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R L       D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 22 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 77


>gi|295696695|ref|YP_003589933.1| hypothetical protein Btus_2106 [Bacillus tusciae DSM 2912]
 gi|295412297|gb|ADG06789.1| hypothetical protein Btus_2106 [Bacillus tusciae DSM 2912]
          Length = 356

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          R L+  A  +    ++S+I+E   +S+  +  ++    + G 
Sbjct: 34 RALVVLA--SAQKMKVSEISELYHLSQEHIRHVIHAFNQHGF 73


>gi|126651591|ref|ZP_01723794.1| hypothetical protein BB14905_13300 [Bacillus sp. B14905]
 gi|126591540|gb|EAZ85646.1| hypothetical protein BB14905_13300 [Bacillus sp. B14905]
          Length = 315

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +   ++      I ++A+ C +S   + + L  L + G+ + +  G  GG R+ R 
Sbjct: 10 LMMKVNERKKFTIQEMADECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRVLRE 65


>gi|220931123|ref|YP_002508031.1| regulatory protein ArsR [Halothermothrix orenii H 168]
 gi|219992433|gb|ACL69036.1| regulatory protein ArsR [Halothermothrix orenii H 168]
          Length = 97

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +      +IA    IS+  +   L  L  AG+VE  R
Sbjct: 25 KESDLTAGEIASEFDISKPSISHHLNILKNAGLVEARR 62


>gi|293400439|ref|ZP_06644585.1| putative transcriptional regulator [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306839|gb|EFE48082.1| putative transcriptional regulator [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 327

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          MHL +  +     ++Y  ++        ++AE   +S   +++ +  L  AGI + T +G
Sbjct: 1  MHLQRLFE-----IVYLLLYR-KKVTAKELAERFEVSTRTIYRDIDTLSAAGIPIYTNKG 54

Query: 60 RRGGVRL 66
          + GG+ L
Sbjct: 55 KDGGIFL 61


>gi|259047222|ref|ZP_05737623.1| biotin--[acetyl-CoA-carboxylase] ligase BirA [Granulicatella
          adiacens ATCC 49175]
 gi|259036272|gb|EEW37527.1| biotin--[acetyl-CoA-carboxylase] ligase BirA [Granulicatella
          adiacens ATCC 49175]
          Length = 330

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          D P     IA+   +S   ++K +Q L K G  + +    + G +L R  D +T+
Sbjct: 16 DKPLSGQDIADQLKLSRTAVWKAIQQLKKDGYEITSS--TKVGYQLSRQTDLLTL 68


>gi|254488478|ref|ZP_05101683.1| transcriptional regulator, ArsR family [Roseobacter sp. GAI101]
 gi|214045347|gb|EEB85985.1| transcriptional regulator, ArsR family [Roseobacter sp. GAI101]
          Length = 114

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 13/97 (13%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + VL            I  I     IS   L   ++ LV AG+V+  R            
Sbjct: 27  LHVLRILVRAGPEGLTIGTIGRRSGISGSTLTHHVKLLVAAGLVQQQR----------QG 76

Query: 71  DQITILDVVK-ATEE--SFFVAECFASHKIDCPLVGS 104
             I    V   A  +   F + EC A     CP    
Sbjct: 77  RSIICAAVAHDAVHDLSRFLLTECCADADTPCPDHTH 113


>gi|295840501|ref|ZP_06827434.1| DeoR-family transcriptional regulator [Streptomyces sp. SPB74]
 gi|197696578|gb|EDY43511.1| DeoR-family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 327

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +         ++A    ++   + + ++ L   G  V  ++G  GG RL 
Sbjct: 5  LQRGRNWSGPELAARLGVTARTVRRDVERLRALGYPVHALQGVGGGYRLG 54


>gi|4731015|gb|AAD28343.1|AF102509_1 regulatory protein [Mycobacterium smegmatis str. MC2 155]
          Length = 245

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++  + +D    P  +  +A    ++ + + + L  L +  +VET RGR GG  + RPA
Sbjct: 27 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLRELELVETRRGRSGGSFVRRPA 84


>gi|325920322|ref|ZP_08182259.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
 gi|325549184|gb|EGD20101.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
          Length = 298

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
          +AE   I    + + +  L + G  ++   G  GG RL + A  + +L      EE   +
Sbjct: 3  LAERLEIHPRSVRRDIDRLRELGYPIQAAPGTGGGYRLGQGAAALPLL-----FEEDEAL 57

Query: 89 A 89
           
Sbjct: 58 T 58


>gi|293610115|ref|ZP_06692416.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827347|gb|EFF85711.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124287|gb|ADY83810.1| transcriptional regulator, IclR family [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 257

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV A +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRPIINVDIICEELGLSKPTSYRYLKELVSADLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD + + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|228943453|ref|ZP_04105897.1| transcriptional regulator [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228976292|ref|ZP_04136763.1| transcriptional regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228783396|gb|EEM31504.1| transcriptional regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816233|gb|EEM62414.1| transcriptional regulator [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 219

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + ++   +  +      ++AE   IS   + + L+ L   G++E++ G
Sbjct: 24 KAIVTLELQPEQRLNDKELAEEFGISRTPVREALKRLEDEGLIESIPG 71


>gi|229015975|ref|ZP_04172936.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273]
 gi|229022192|ref|ZP_04178742.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272]
 gi|228739123|gb|EEL89569.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272]
 gi|228745335|gb|EEL95376.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273]
          Length = 313

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +L++ +          +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 10 ILIFASAK--RTFTAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|20093126|ref|NP_619201.1| iron dependent repressor [Methanosarcina acetivorans C2A]
 gi|19918464|gb|AAM07681.1| iron dependent repressor [Methanosarcina acetivorans C2A]
          Length = 224

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           +Y +  ++Y    N  P +  QIAE   +S   + ++++ L   G VE       GV L 
Sbjct: 11  EY-LETILYLITKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYK--PYQGVELT 67

Query: 68  RPADQITIL-----DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
               +  +       V++         +   +H+  C L       +V    L   +D L
Sbjct: 68  EKGAEEAVRIKRKHQVLETFLADVLDFDRKEAHREACELE-----HAVSDSVLERLYDFL 122

Query: 123 TQ 124
             
Sbjct: 123 GN 124


>gi|115467332|ref|NP_001057265.1| Os06g0240800 [Oryza sativa Japonica Group]
 gi|51535174|dbj|BAD37886.1| putative O-methyltransferase [Oryza sativa Japonica Group]
 gi|51535782|dbj|BAD37839.1| putative O-methyltransferase [Oryza sativa Japonica Group]
 gi|113595305|dbj|BAF19179.1| Os06g0240800 [Oryza sativa Japonica Group]
 gi|125596656|gb|EAZ36436.1| hypothetical protein OsJ_20767 [Oryza sativa Japonica Group]
          Length = 344

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%)

Query: 10 GIRVLMYC----AIHN-DYPNRISQIAEACCISE---LFLFKILQPLVKAGI 53
           +R         AIH       IS IA    +       L +I++ L  AGI
Sbjct: 33 ALRCAADLGVPSAIHRRGGAATISDIAADTGVHPAKLPHLRRIMRVLTVAGI 84


>gi|62390392|ref|YP_225794.1| ArsR family regulatory protein [Corynebacterium glutamicum ATCC
          13032]
 gi|41411213|emb|CAF21518.2| Bacterial regulatory proteins, ArsR family [Corynebacterium
          glutamicum ATCC 13032]
          Length = 119

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R+L   A     P  ++++ +   +S+  +   L+ + +AG ++
Sbjct: 44 LRILSQLAAGGCGPVSVNELTDLMGLSQPTISHHLKKMTEAGFLD 88


>gi|154244130|ref|YP_001415088.1| GntR family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154158215|gb|ABS65431.1| transcriptional regulator, GntR family [Xanthobacter
          autotrophicus Py2]
          Length = 311

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 22 DYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
            P     Q+A+   +S   +  +L  + + G+V    GRR   RL R  
Sbjct: 24 GAPMTSETQLAQTLGVSRTTVRAVLALMSETGLVTASEGRR---RLARHP 70


>gi|19745367|ref|NP_606503.1| hypothetical protein spyM18_0213 [Streptococcus pyogenes
          MGAS8232]
 gi|21909698|ref|NP_663966.1| hypothetical protein SpyM3_0162 [Streptococcus pyogenes MGAS315]
 gi|28895081|ref|NP_801431.1| hypothetical protein SPs0169 [Streptococcus pyogenes SSI-1]
 gi|50913572|ref|YP_059544.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS10394]
 gi|56807996|ref|ZP_00365805.1| COG1846: Transcriptional regulators [Streptococcus pyogenes M49
          591]
 gi|71902855|ref|YP_279658.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS6180]
 gi|71910009|ref|YP_281559.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS5005]
 gi|94987827|ref|YP_595928.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS9429]
 gi|94989703|ref|YP_597803.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS10270]
 gi|94991704|ref|YP_599803.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS2096]
 gi|94993586|ref|YP_601684.1| MarR family transcriptional regulator [Streptococcus pyogenes
          MGAS10750]
 gi|139473055|ref|YP_001127770.1| MarR family transcriptional regulator [Streptococcus pyogenes
          str. Manfredo]
 gi|306828061|ref|ZP_07461326.1| MarR family transcriptional regulator [Streptococcus pyogenes
          ATCC 10782]
 gi|19747473|gb|AAL97002.1| hypothetical protein spyM18_0213 [Streptococcus pyogenes
          MGAS8232]
 gi|21903881|gb|AAM78769.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810326|dbj|BAC63264.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50902646|gb|AAT86361.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS10394]
 gi|71801950|gb|AAX71303.1| transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS6180]
 gi|71852791|gb|AAZ50814.1| transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS5005]
 gi|94541335|gb|ABF31384.1| transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS9429]
 gi|94543211|gb|ABF33259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS10270]
 gi|94545212|gb|ABF35259.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS2096]
 gi|94547094|gb|ABF37140.1| Transcriptional regulator, MarR family [Streptococcus pyogenes
          MGAS10750]
 gi|134271301|emb|CAM29518.1| MarR family regulatory protein [Streptococcus pyogenes str.
          Manfredo]
 gi|304429777|gb|EFM32821.1| MarR family transcriptional regulator [Streptococcus pyogenes
          ATCC 10782]
          Length = 149

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          VL++ A H +    +  I +   IS+     +++ +VK G +
Sbjct: 38 VLVFLAKHQNQEIFVKDIEKQLRISKSVASHLVKRMVKNGFI 79


>gi|307326875|ref|ZP_07606066.1| putative transcriptional regulator, ArsR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887411|gb|EFN18406.1| putative transcriptional regulator, ArsR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 363

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             P   S++A+   +++  + + L+ L  AG++E+ R
Sbjct: 300 GEPITTSELAQRMGLADTQVSRTLRQLRDAGLIESER 336


>gi|255532122|ref|YP_003092494.1| regulatory protein GntR [Pedobacter heparinus DSM 2366]
 gi|255345106|gb|ACU04432.1| regulatory protein GntR HTH [Pedobacter heparinus DSM 2366]
          Length = 228

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++AEA  +S   L + L  L   G++ET + R  G+ L RP
Sbjct: 46 ELAEALDVSRNVLREALSRLRMLGMIETKKKR--GMILARP 84


>gi|332976050|gb|EGK12920.1| DeoR family transcriptional regulator [Desmospora sp. 8437]
          Length = 314

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R++ +   ++     ++ ++A+   +S+  + + L+ L + G+ + +  G  GG ++ R 
Sbjct: 6  RLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLRELSELGVPLYSEVGPHGGYQVIRE 65


>gi|330875909|gb|EGH10058.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 244

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +         +T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIVTVADVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|312194615|ref|YP_004014676.1| MarR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311225951|gb|ADP78806.1| regulatory protein MarR [Frankia sp. EuI1c]
          Length = 200

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL+  A   D   R+S++A+A  +S   L +++  LVK G+VE
Sbjct: 79  VLVQLAETPDGALRMSELADAVLLSRSGLTRLVDRLVKEGLVE 121


>gi|227541205|ref|ZP_03971254.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183049|gb|EEI64021.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 197

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   +     P  + ++ E   +S+  +   L+ L + G+++ VR
Sbjct: 126 LRLLSQLSAEGCGPVSVGELTETSGLSQPTVSHHLKRLTETGLLDKVR 173


>gi|187919091|ref|YP_001888122.1| IclR family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187717529|gb|ACD18752.1| transcriptional regulator, IclR family [Burkholderia phytofirmans
          PsJN]
          Length = 250

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           L+   +++D P  ++ IA+   + +  L ++L  L   G+V    G++    +     Q
Sbjct: 13 ALLEHLVNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQ 72

Query: 73 ITILDVVK 80
          + +  V+ 
Sbjct: 73 LALGVVMH 80


>gi|167752880|ref|ZP_02425007.1| hypothetical protein ALIPUT_01142 [Alistipes putredinis DSM 17216]
 gi|167659949|gb|EDS04079.1| hypothetical protein ALIPUT_01142 [Alistipes putredinis DSM 17216]
          Length = 456

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC----RPADQIT 74
             N+    + ++     +    +  +L  LV+ G++  +R       +     R   ++T
Sbjct: 324 RENEGALPVDELRRRLSLPTRIVNDVLHQLVRTGLLIEIRNPDDDREVAFAPGRDIHEMT 383

Query: 75  ILDVVK-------------ATEESFFVAECFASHKIDCPLVGSCGLTSV-LRKALNA 117
           + ++ +             ATEE+  +       +  C   G   L  + L  A+NA
Sbjct: 384 LYNIFRTIDNYSSTRLYFAATEETRRIDRALDELQTACRTAGD-RLRLIDLDDAVNA 439


>gi|163758590|ref|ZP_02165677.1| putative nodulation protein [Hoeflea phototrophica DFL-43]
 gi|162283880|gb|EDQ34164.1| putative nodulation protein [Hoeflea phototrophica DFL-43]
          Length = 98

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ C +      ++  +AE   +S+  L + L  L   G+V T R
Sbjct: 26 RLLILCNLARGE-VQVGVLAERVQLSQSALSQHLAKLRNQGLVSTRR 71


>gi|158520550|ref|YP_001528420.1| hypothetical protein Dole_0533 [Desulfococcus oleovorans Hxd3]
 gi|158509376|gb|ABW66343.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 183

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++ +T   IR+L+    + +  + + ++A+   +S   + + L  L K G++ + +
Sbjct: 9  ISSKTR--IRLLVRFFFNPEARSYLRELAKELDVSTNAVREELNQLRKTGLLTSEK 62


>gi|126436720|ref|YP_001072411.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236520|gb|ABN99920.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
          Length = 246

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73
           S++ E   +S   L +  + L    +++  RG RGG R+ RP  +              +
Sbjct: 38  SELMERFGVSRPTLREAFRVLESESLIQVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97

Query: 74  TILDVVKA 81
           T+ DV  A
Sbjct: 98  TVKDVYDA 105


>gi|84489206|ref|YP_447438.1| transcriptional regulator [Methanosphaera stadtmanae DSM 3091]
 gi|84372525|gb|ABC56795.1| predicted transcriptional regulator [Methanosphaera stadtmanae
          DSM 3091]
          Length = 295

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +   IA+    +   +   +Q L   G+V+ V G RGG +
Sbjct: 25 VKCESIADLMGRNSGTIRNQMQSLRSLGLVQGVPGPRGGYK 65


>gi|333010447|gb|EGK29880.1| transcriptional regulator, GntR family [Shigella flexneri VA-6]
          Length = 304

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + GI+  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGILTQV---GNDYVIARKPD 72


>gi|326776177|ref|ZP_08235442.1| transcriptional regulator, ArsR family [Streptomyces cf. griseus
          XylebKG-1]
 gi|326656510|gb|EGE41356.1| transcriptional regulator, ArsR family [Streptomyces cf. griseus
          XylebKG-1]
          Length = 133

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94


>gi|285019900|ref|YP_003377611.1| hypothetical protein XALc_3138 [Xanthomonas albilineans GPE PC73]
 gi|283475118|emb|CBA17617.1| hypothetical protein XALc_3138 [Xanthomonas albilineans]
          Length = 99

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR----- 65
           VL   A        + ++A    I+E  + +I+  L  AG+++  R GR+   R     
Sbjct: 14 HVLFCLAADPQQ--TLREVATKVGITERAVQRIVAELEAAGVLQRQRDGRQNTYRIVRGV 71

Query: 66 -LCRPADQ-ITILDVVKAT 82
           L  P +    I D++   
Sbjct: 72 PLRHPLEAHCRIGDLIDVV 90


>gi|39996726|ref|NP_952677.1| GntR family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39983607|gb|AAR35000.1| transcriptional regulator, GntR family [Geobacter sulfurreducens
          PCA]
 gi|298505737|gb|ADI84460.1| transcriptional regulator, GntR family [Geobacter sulfurreducens
          KN400]
          Length = 241

 Score = 36.1 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +      ++AE   +S   + + L  L  AG+VE+ +G  
Sbjct: 31 GEKLPPERELAEMFGVSRPSVREALNILAAAGLVESYQGGG 71


>gi|222053928|ref|YP_002536290.1| ribonuclease BN [Geobacter sp. FRC-32]
 gi|221563217|gb|ACM19189.1| ribonuclease BN [Geobacter sp. FRC-32]
          Length = 440

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 10  GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            + +L   A        P    ++AE+  +    + ++L  L  +G +    G       
Sbjct: 316 ALSILQEVATAFHLGSPPLTKERLAESLDVPIRLVRELLIQLTDSGYLIRSAGELSSYYP 375

Query: 67  CRPADQITILDVVKATEE 84
            R  +QI + +V+ +   
Sbjct: 376 ARELEQIPVNEVLSSLRG 393


>gi|254380787|ref|ZP_04996153.1| regulatory protein [Streptomyces sp. Mg1]
 gi|194339698|gb|EDX20664.1| regulatory protein [Streptomyces sp. Mg1]
          Length = 316

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILD 77
           D P   +Q+A    +S   + + L  L  AG+V   R GR       R A   T+L 
Sbjct: 258 DMPASTTQLAHRTGLSPAGVSQYLTALRNAGLVSAHRAGRSVLY--ARTAAAETLLQ 312


>gi|158424909|ref|YP_001526201.1| putative transcription regulator protein [Azorhizobium
          caulinodans ORS 571]
 gi|158331798|dbj|BAF89283.1| putative transcription regulator protein [Azorhizobium
          caulinodans ORS 571]
          Length = 334

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
                 +Q+A+   +S   +  +L  L +AG+V    GRR   +L R  
Sbjct: 24 GARLGSEAQLAQVLEVSRTTVRAVLAALAEAGLVTAEAGRR---QLARHP 70


>gi|108757345|ref|YP_635604.1| ArsR family transcriptional regulator [Myxococcus xanthus DK
          1622]
 gi|108461225|gb|ABF86410.1| transcriptional regulator, ArsR family [Myxococcus xanthus DK
          1622]
          Length = 108

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          R ++   +  D P     IAE   +S   + + L+ L+ AG+V   R GR    RL
Sbjct: 18 RRMLDLLVDGDRPVNS--IAENFEMSRPAVSQHLRVLLDAGLVTEQRHGRERRYRL 71


>gi|86356719|ref|YP_468611.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280821|gb|ABC89884.1| probable transcriptional regulator protein [Rhizobium etli CFN
          42]
          Length = 109

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           A   +    ++++A+   +S+  + K L+ L +AG++ + R      R+  PA   TI 
Sbjct: 21 LARLANGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGREANSRPRILEPAALKTIA 80

Query: 77 D 77
          D
Sbjct: 81 D 81


>gi|16799818|ref|NP_470086.1| hypothetical protein lin0743 [Listeria innocua Clip11262]
 gi|16413195|emb|CAC95975.1| lin0743 [Listeria innocua Clip11262]
          Length = 125

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           D    + ++A    ++   + +    L +AGI+ TVRG   G  L     +I
Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGT--GKYLTEDKRRI 79


>gi|313498376|gb|ADR59742.1| Regulatory protein GntR HTH [Pseudomonas putida BIRD-1]
          Length = 262

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +R  +      H +   + + +A+   ++   L + L  L + G+V+T  GR GG
Sbjct: 31 LRTAIDLGFLQHGEMLPKEALLAKELHVTAFTLREALAQLREEGLVDTKPGRGGG 85


>gi|312868158|ref|ZP_07728362.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096562|gb|EFQ54802.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis F0405]
          Length = 210

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           H + +       L +C  +     +++Q+A    IS   L ++++ +++ G+V+
Sbjct: 130 HYSVKERLATHFLEHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 183


>gi|291550802|emb|CBL27064.1| Transcriptional regulators [Ruminococcus torques L2-14]
          Length = 367

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  +      +++E   +S   + + L+ LVK  IVE+ RG  
Sbjct: 21 VSGEKLPSEQELSEQFQVSRQTVRRALEELVKENIVESRRGSG 63


>gi|288959597|ref|YP_003449938.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288911905|dbj|BAI73394.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 118

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 3  LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L + T   + R+L+    +        ++A+   +    L   L  L +AG++ + R
Sbjct: 13 LAQETRLAVFRLLITVGPNG---LTAGEVAQQVGVPASTLSHHLATLERAGLLRSWR 66


>gi|239942208|ref|ZP_04694145.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 372

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P    ++AE+  I+   + + L  L KAG+V T R  RG   L
Sbjct: 310 SPYTTGELAESHSITAPEVSRHLSVLKKAGLVTTRR--RGRYVL 351


>gi|226359430|ref|YP_002777207.1| arsenic resistance operon repressor ArsR [Rhodococcus opacus B4]
 gi|226237914|dbj|BAH48262.1| putative arsenic resistance operon repressor ArsR [Rhodococcus
          opacus B4]
          Length = 130

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+    +S+  +   L+ L  AG+++  R
Sbjct: 42 LRLLSLIASHAGGEACVCDISATIDLSQPTISHHLKVLRAAGLLDCER 89


>gi|297204628|ref|ZP_06922025.1| GntR regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197710696|gb|EDY54730.1| GntR regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 267

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 14/64 (21%)

Query: 32  EACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--------------TILD 77
           E   IS   L +  + L    ++   RG  GG R+  P   +              T+ D
Sbjct: 61  EQFGISRPTLREAFRVLESESLITVRRGAHGGARVSAPDSDVAARFAGLILEYRGATLGD 120

Query: 78  VVKA 81
           + +A
Sbjct: 121 IYRA 124


>gi|254427833|ref|ZP_05041540.1| biotin-(acetyl-CoA-carboxylase) ligase [Alcanivorax sp. DG881]
 gi|196194002|gb|EDX88961.1| biotin-(acetyl-CoA-carboxylase) ligase [Alcanivorax sp. DG881]
          Length = 320

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVK 80
            S++ E   IS   ++K +Q L   G+ +E+V+G+  G RL +P + I   D+V+
Sbjct: 19 SGSELGEVLGISRAGVWKRVQRLADFGLTLESVKGK--GYRLAQPLELID-SDIVQ 71


>gi|313607560|gb|EFR83856.1| conserved hypothetical protein [Listeria monocytogenes FSL F2-208]
          Length = 238

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 2   HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52
            LT R    Y +  L+   +                 +A+    S+ +  K+L  L + G
Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203

Query: 53  IVETVR 58
           I+E+ +
Sbjct: 204 ILESQK 209


>gi|307571718|emb|CAR84897.1| cyclic nucleotide-binding family protein [Listeria monocytogenes
           L99]
          Length = 238

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 2   HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52
            LT R    Y +  L+   +                 +A+    S+ +  K+L  L + G
Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203

Query: 53  IVETVR 58
           I+E+ +
Sbjct: 204 ILESQK 209


>gi|302552335|ref|ZP_07304677.1| helix-turn-helix domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302469953|gb|EFL33046.1| helix-turn-helix domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 348

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           N      S++A    +S   +++ ++ L  AG+ V   RG  GG RL
Sbjct: 14 QNRGRMTASELAAELEVSVRTVYRDVEALGAAGVPVCADRGPEGGYRL 61


>gi|300789860|ref|YP_003770151.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299799374|gb|ADJ49749.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 196

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +  L+    H +    I+++AEAC +S   + + ++ LV  GI+E  R GR    RL + 
Sbjct: 19 LLALVLL--HPEREYSITELAEACGVSPTAVLREVERLVGGGILEDRRVGRS---RLVKA 73

Query: 70 ADQITIL----DVVKATEESFFV 88
               +     +V+  T     +
Sbjct: 74 RTDTPLYRPLSEVIAITFGPLPL 96


>gi|262377840|ref|ZP_06071055.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter lwoffii SH145]
 gi|262307230|gb|EEY88378.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter lwoffii SH145]
          Length = 247

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 1  MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +    +R+L+        +      Q+ E   +S   L + +Q L+ AGI+++  
Sbjct: 1  MKVSDKVVQRLRLLIEKNNVQVGERLPAERQLCEQLGVSRSSLREAIQQLITAGIIQSKA 60

Query: 59 GRRGGVRLCRPADQITILDVVK 80
          G   G  L +     +   +V+
Sbjct: 61 GA--GTYLKQLPAHWSQYQIVE 80


>gi|290894420|ref|ZP_06557382.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556040|gb|EFD89592.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 238

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 2   HLTKRTD--YGIRVLMYCAIHNDYPN-------RISQIAEACCISELFLFKILQPLVKAG 52
            LT R    Y +  L+   +                 +A+    S+ +  K+L  L + G
Sbjct: 144 KLTSRESIYYSLNTLIELGLRISEKVVELPGFLTYQILADHANTSKSYTSKVLGYLRQEG 203

Query: 53  IVETVR 58
           I+E+ +
Sbjct: 204 ILESQK 209


>gi|239926649|ref|ZP_04683602.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 379

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGV 64
          +R LM      +     ++IA    IS+  +   ++ L +AG++       T RGR G  
Sbjct: 20 LRALM-----EEGRLTRAEIAARTGISKPTVSDSVRRLSEAGLLADTGERTTGRGRVGTY 74

Query: 65 R 65
           
Sbjct: 75 Y 75


>gi|254512575|ref|ZP_05124641.1| transcriptional regulator, DeoR family [Rhodobacteraceae
          bacterium KLH11]
 gi|221532574|gb|EEE35569.1| transcriptional regulator, DeoR family [Rhodobacteraceae
          bacterium KLH11]
          Length = 263

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R L+          R +QIA+   +SE  + ++++ L +A +VE V    GG  L R  D
Sbjct: 13 RELLDVLARLGGSARNTQIAQIMDVSEETVRRLVKTLARANMVERV---HGGTYLSRAQD 69

Query: 72 Q 72
           
Sbjct: 70 T 70


>gi|315230499|ref|YP_004070935.1| hypothetical protein TERMP_00735 [Thermococcus barophilus MP]
 gi|315183527|gb|ADT83712.1| hypothetical protein TERMP_00735 [Thermococcus barophilus MP]
          Length = 276

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            L+Y  +        +++  A  + +   +++ + L K G+V+ +RGR+
Sbjct: 221 ALLYI-LEKGGRASQAEVRNALGLPKTTAWRMFKRLEKQGLVKIIRGRK 268


>gi|168465551|ref|ZP_02699433.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Newport str. SL317]
 gi|195631869|gb|EDX50389.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Newport str. SL317]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|168333354|ref|ZP_02691634.1| transcriptional regulator, GntR family, putative [Epulopiscium
          sp. 'N.t. morphotype B']
          Length = 230

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVRLCRPADQIT-ILDV 78
           D       + E   +S   + + +  L K GIV T +G+  G     +  D +T +L++
Sbjct: 27 GDKLKPERVLVEEYEVSRSSVREAIGALNKMGIVVTRQGKNRGNYINDKAPDMLTKVLEI 86

Query: 79 VKATEESFFV 88
              +++  +
Sbjct: 87 YMILDDNLAI 96


>gi|194444886|ref|YP_002039699.1| extracellular solute-binding protein family 5 [Salmonella
          enterica subsp. enterica serovar Newport str. SL254]
 gi|194403549|gb|ACF63771.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Newport str. SL254]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|197251580|ref|YP_002145437.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Agona str. SL483]
 gi|197215283|gb|ACH52680.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Agona str. SL483]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|120403917|ref|YP_953746.1| helix-turn-helix, type 11 domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119956735|gb|ABM13740.1| Helix-turn-helix, type 11 domain protein [Mycobacterium
          vanbaalenii PYR-1]
          Length = 230

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR- 68
          +  L+     +  P   +++++   +S+  + + +Q L  AG+ +    G  GG  + R 
Sbjct: 7  LYALVDLLRGSRRPLSAARLSQEFEVSKRTIERDIQSLQLAGVPIYADYGVSGGYSILRE 66

Query: 69 ---PADQITI 75
             P   +T+
Sbjct: 67 HSLPPLNLTV 76


>gi|315642540|ref|ZP_07897017.1| RepE protein [Enterococcus italicus DSM 15952]
 gi|315482257|gb|EFU72821.1| RepE protein [Enterococcus italicus DSM 15952]
          Length = 374

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
           +    + E+  I +  L K+L+ L +   +      GR GG+ L 
Sbjct: 270 STKKDLTESLKIPKRSLDKVLKQLKEENKIHFRVRAGRNGGIMLA 314


>gi|315303842|ref|ZP_07874329.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria ivanovii FSL
          F6-596]
 gi|313627785|gb|EFR96431.1| biotin-(acetyl-CoA-carboxylase) ligase [Listeria ivanovii FSL
          F6-596]
          Length = 329

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
                  QIA++   S   ++K ++ L K G  +E VR R  G RL   A+Q T
Sbjct: 16 EGAYLSGQQIADSLGCSRTAVWKQMESLRKEGFEIEAVRNR--GYRLSATAEQYT 68


>gi|284997741|ref|YP_003419508.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5]
 gi|284445636|gb|ADB87138.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5]
          Length = 655

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           A+ ++   +  +IA+A  +S+ +   +L+ L + G+VE
Sbjct: 489 ALPDEGGLKSQEIADALKVSKQYAINVLKNLERKGVVE 526


>gi|239988675|ref|ZP_04709339.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291445662|ref|ZP_06585052.1| ArsR-family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348609|gb|EFE75513.1| ArsR-family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 370

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P    ++AE+  I+   + + L  L KAG+V T R  RG   L
Sbjct: 308 SPYTTGELAESHSITAPEVSRHLSVLKKAGLVTTRR--RGRYVL 349


>gi|261404782|ref|YP_003241023.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261281245|gb|ACX63216.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 317

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L +   + N        +AE   +SE  + + ++ L  AGI V   RG +GG  L
Sbjct: 5  RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61


>gi|187934272|ref|YP_001885773.1| transcriptional regulatory protein [Clostridium botulinum B str.
          Eklund 17B]
 gi|187722425|gb|ACD23646.1| transcriptional regulatory protein [Clostridium botulinum B str.
          Eklund 17B]
          Length = 244

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                   ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 33 EGSRLPSEPELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74


>gi|168231445|ref|ZP_02656503.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CDC 191]
 gi|194472206|ref|ZP_03078190.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Kentucky str.
          CVM29188]
 gi|194458570|gb|EDX47409.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Kentucky str.
          CVM29188]
 gi|205334083|gb|EDZ20847.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Kentucky
          str. CDC 191]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|167037447|ref|YP_001665025.1| MarR family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|297544513|ref|YP_003676815.1| MarR family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|320115860|ref|YP_004186019.1| regulatory protein MarR [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
 gi|166856281|gb|ABY94689.1| transcriptional regulator, MarR family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|296842288|gb|ADH60804.1| transcriptional regulator, MarR family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|319928951|gb|ADV79636.1| regulatory protein MarR [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 146

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          V++  + +   P  +  IA    IS   L  I+  LV+ G+V+
Sbjct: 44 VIIILSENKSNPMYMKDIALELGISPSTLTSIVDKLVEKGLVQ 86


>gi|111220934|ref|YP_711728.1| hypothetical protein FRAAL1481 [Frankia alni ACN14a]
 gi|111148466|emb|CAJ60137.1| hypothetical protein FRAAL1481 [Frankia alni ACN14a]
          Length = 426

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--RLCRP 69
          R+L   A   D  +    +A A   S   + ++ + L + G V   +G  G +  RL +P
Sbjct: 7  RILDQLAKVPDGLDDGR-LAAAIGASRGTVNQVCRRLAQTGQVRRAQGPGGLILNRLPQP 65

Query: 70 ADQIT--ILDVVKATEESFFVAE 90
          A  I     D V  TE +     
Sbjct: 66 AATIPEIPGDSVPVTEAAVEPVP 88


>gi|111022260|ref|YP_705232.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110821790|gb|ABG97074.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 250

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
            +A    +S   +   +  LV+AGI+ +  GR G        + I+I 
Sbjct: 39 RALAAQMDVSRPTVSSAISKLVEAGILRSRPGRHG------NPEVISIW 81


>gi|120402844|ref|YP_952673.1| regulatory protein GntR [Mycobacterium vanbaalenii PYR-1]
 gi|119955662|gb|ABM12667.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 251

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++  + +D    P  +  +A    ++ + + + L  L +  +VET RGR GG  + RPA
Sbjct: 28 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLREQELVETRRGRSGGSFVRRPA 85


>gi|16077849|ref|NP_388663.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221308617|ref|ZP_03590464.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221312941|ref|ZP_03594746.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221317866|ref|ZP_03599160.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221322139|ref|ZP_03603433.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|321314509|ref|YP_004206796.1| GntR family transcriptional regulator [Bacillus subtilis BSn5]
 gi|1717743|sp|P39796|TRER_BACSU RecName: Full=Trehalose operon transcriptional repressor
 gi|1000453|emb|CAA91016.1| TreR [Bacillus subtilis]
 gi|2626829|dbj|BAA23407.1| TreR [Bacillus subtilis]
 gi|2633106|emb|CAB12611.1| transcriptional regulator (GntR family) [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|291483219|dbj|BAI84294.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          natto BEST195]
 gi|320020783|gb|ADV95769.1| transcriptional regulator (GntR family) protein [Bacillus
          subtilis BSn5]
          Length = 238

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++      S   + K L  L + G ++ +RG+ G V L R 
Sbjct: 33 ELTAQYGTSRETVRKALHMLAQNGYIQKIRGK-GSVVLNRE 72


>gi|312960257|ref|ZP_07774768.1| transcriptional regulator, GntR family [Pseudomonas fluorescens
           WH6]
 gi|311285479|gb|EFQ64049.1| transcriptional regulator, GntR family [Pseudomonas fluorescens
           WH6]
          Length = 259

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRL 66
             A     P     +AE   +S   + + +  L  +G+VET  G            G R+
Sbjct: 33  ELARGTKMPTESQVMAE-HGVSRTVVREAISRLQASGLVETRHGVGTFVKDIPSPSGFRI 91

Query: 67  CRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
               D I T+ DV+   E    +     +  + C       L  V+R +L+A 
Sbjct: 92  --DPDTIVTLQDVLAVLELRISLE--VEAAGLACLGRTDEQLR-VMRDSLDAL 139


>gi|307719144|ref|YP_003874676.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306532869|gb|ADN02403.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 320

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           M     +    R+L Y   H      +S++AE   +   +L +      K G+
Sbjct: 178 MRY--FSRVA-RILKYLDTHYMDRISLSELAEREGVHPSYLSRFFHE--KVGL 225


>gi|299536823|ref|ZP_07050130.1| MarR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
 gi|298727647|gb|EFI68215.1| MarR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
          Length = 139

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +++  P+    IA    I +  + K++  LV+ G VET+ G+
Sbjct: 42 LNDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMTGK 83


>gi|297530180|ref|YP_003671455.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297253432|gb|ADI26878.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3]
          Length = 135

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 21/49 (42%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++      +D    +  +A+   I+   + K  + L + G + ++ G+ 
Sbjct: 24 IVRELWQPHDQLPSVRTMAKQLTINPNTIQKAYRELERDGWIYSIPGKG 72


>gi|288961372|ref|YP_003451711.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913680|dbj|BAI75167.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 255

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 11 IRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R L+     A  +  P    ++AEA  +S + + K L+ L+  G++   +G  
Sbjct: 34 LRTLIVEGRLAEQDALPGE-RELAEAFGVSRVTVRKALRELIAEGLLHQRQGAG 86


>gi|282866344|ref|ZP_06275389.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE]
 gi|282558740|gb|EFB64297.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE]
          Length = 365

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P    ++A++  I+   + + L  L KAG++ T R  RG   L
Sbjct: 303 SPYTTGELADSHGITAPEVSRHLSVLKKAGLITTRR--RGRYVL 344


>gi|258650303|ref|YP_003199459.1| MarR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258553528|gb|ACV76470.1| transcriptional regulator, MarR family [Nakamurella multipartita
           DSM 44233]
          Length = 201

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           IR L+    + + P  I +IA +  +S     + +  LV+AG+VE
Sbjct: 63  IRTLLTLTQNPE-PVPIHEIATSLELSVATAGRNVDQLVRAGLVE 106


>gi|302546051|ref|ZP_07298393.1| putative transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302463669|gb|EFL26762.1| putative transcriptional regulator [Streptomyces himastatinicus
          ATCC 53653]
          Length = 329

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   +        +++A    +SE  + +    L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQARPSMTGAELARELEVSERTVTRDAAALSEAGVPVYADRGRAGGYRL 61


>gi|256392517|ref|YP_003114081.1| GntR family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256358743|gb|ACU72240.1| transcriptional regulator, GntR family [Catenulispora acidiphila
          DSM 44928]
          Length = 253

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 12 RVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
            +   A            +A    +S   + + L  L + G+V + RG
Sbjct: 16 HAITEHAYGPGGKLPSEGALAGQYEVSRGTIRQALMLLRQDGLVTSRRG 64


>gi|224582294|ref|YP_002636092.1| solute-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|224466821|gb|ACN44651.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|200390286|ref|ZP_03216897.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Virchow
          str. SL491]
 gi|199602731|gb|EDZ01277.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Virchow
          str. SL491]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|149186320|ref|ZP_01864633.1| transcriptional regulator, ArsR family protein [Erythrobacter sp.
          SD-21]
 gi|148829909|gb|EDL48347.1| transcriptional regulator, ArsR family protein [Erythrobacter sp.
          SD-21]
          Length = 105

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM     +     + ++++   +S+  L + L  L + G+V+T R
Sbjct: 24 LMILCQLSQGEMTVGEMSKHVSLSQSALSQHLSLLRREGLVKTRR 68


>gi|146302056|ref|YP_001196647.1| MarR family transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156474|gb|ABQ07328.1| transcriptional regulator, MarR family [Flavobacterium johnsoniae
           UW101]
          Length = 345

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            +    I++IA     S+  + KI+Q +  AGIV+
Sbjct: 81  EERELTITEIANEIGHSQPSVSKIIQEMSNAGIVK 115


>gi|91778226|ref|YP_553434.1| IclR family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91690886|gb|ABE34084.1| transcriptional regulator, IclR family [Burkholderia xenovorans
          LB400]
          Length = 249

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          G+ +L   A  +  P  I  +AE   +++    + LQ L  AG 
Sbjct: 8  GLMLLEALADQSGRPVTIQLLAERVGLTKSNTHRTLQTLAHAGY 51


>gi|62179068|ref|YP_215485.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
 gi|62126701|gb|AAX64404.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
 gi|322713529|gb|EFZ05100.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 571

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 29 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 70


>gi|72161253|ref|YP_288910.1| regulatory proteins, IclR [Thermobifida fusca YX]
 gi|71914985|gb|AAZ54887.1| regulatory proteins, IclR [Thermobifida fusca YX]
          Length = 276

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            L+           +S++A++  +    + +I++ LV  G V  +  RR    L      
Sbjct: 40  CLLEIMAEAGGETSLSELAQSSGLPLPTIHRIVRSLVSNGYVRQLPSRR--YALG--PRL 95

Query: 73  ITILD 77
           I + +
Sbjct: 96  IGLGE 100


>gi|54024599|ref|YP_118841.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016107|dbj|BAD57477.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 111

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R+++       YP   S++AE   +S   L   L  L   G+V  V  GRR    L    
Sbjct: 26  RIMVRLRQQPGYP---SELAEQLGVSRQILSNHLACLRGCGLVVAVPEGRRVRYELADAR 82

Query: 71  DQITILDVVKATEESFFVAECFASHKIDC 99
               + D++     +   A C AS +  C
Sbjct: 83  VGAALGDLLGLV-LAVDPACCPASDERGC 110


>gi|42522964|ref|NP_968344.1| MarR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39574160|emb|CAE79337.1| transcriptional regulator, MarR family [Bdellovibrio bacteriovorus
           HD100]
          Length = 327

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVRLCRPADQIT 74
           + N+  N ++ IAEA   S   + KIL  + KAG+V    ++   RR  + L +    ++
Sbjct: 61  LSNEEQNTVTSIAEAIGHSHASVSKILTEMSKAGLVLEKTDSQDRRRTKITLSKKGKDLS 120

Query: 75  ------ILDVVKATE 83
                   DV +A E
Sbjct: 121 EKIERQYADVNEAIE 135


>gi|103485544|ref|YP_615105.1| MarR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98975621|gb|ABF51772.1| transcriptional regulator, MarR family [Sphingopyxis alaskensis
           RB2256]
          Length = 187

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R L + A        IS +     I++  L ++++ L   G+V T  G R      R A 
Sbjct: 73  RALYFIARQPG--LTISDLLALLGITKQSLGRVVKELEARGLVATRPGNR-----DRRAK 125

Query: 72  QITILDVVKATEESFF 87
           ++ + D  +A E   F
Sbjct: 126 ELRLTDAGRAAERELF 141


>gi|313619986|gb|EFR91525.1| transcriptional regulator [Listeria innocua FSL S4-378]
          Length = 125

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           D    + ++A    ++   + +    L +AGI+ TVRG   G  L     +I
Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGT--GKYLTEDKRRI 79


>gi|238911413|ref|ZP_04655250.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|229166296|ref|ZP_04294055.1| Transcriptional regulator, GntR [Bacillus cereus AH621]
 gi|228617241|gb|EEK74307.1| Transcriptional regulator, GntR [Bacillus cereus AH621]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|168237571|ref|ZP_02662629.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
 gi|194738291|ref|YP_002113487.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|194713793|gb|ACF93014.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|197289550|gb|EDY28913.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          Schwarzengrund str. SL480]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|55379029|ref|YP_136879.1| transcription regulator [Haloarcula marismortui ATCC 43049]
 gi|55231754|gb|AAV47173.1| transcription regulator [Haloarcula marismortui ATCC 43049]
          Length = 350

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 21/76 (27%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--------TVRGRRGGVRL 66
           Y +I +      S+IA+   +S+ +++ I + L   G VE        T+R        
Sbjct: 22 TYLSILSSGEATASEIADDTGVSKRYVYSISESLEDRGFVEVNDHVVPTTIR-------- 73

Query: 67 CRPADQITILDVVKAT 82
           RP ++     V+ A 
Sbjct: 74 ARPPEE-----VIDAL 84


>gi|329926151|ref|ZP_08280742.1| HTH domain protein [Paenibacillus sp. HGF5]
 gi|328939425|gb|EGG35779.1| HTH domain protein [Paenibacillus sp. HGF5]
          Length = 317

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L +   + N        +AE   +SE  + + ++ L  AGI V   RG +GG  L
Sbjct: 5  RLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61


>gi|331699924|ref|YP_004336163.1| GntR domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954613|gb|AEA28310.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 252

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRPADQITILDVVKATEESF 86
           ++++ +  +S   + + L+ L    +VET RG +GG         +     VV A  ES 
Sbjct: 47  AELSRSFEVSRSTVREALRSLASQHLVETRRGVQGGSFVSAPDPAR-----VVAAVGESL 101

Query: 87  FV 88
            V
Sbjct: 102 GV 103


>gi|325919773|ref|ZP_08181769.1| beta-ketoadipate pathway transcriptional regulator,
          PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865]
 gi|325549759|gb|EGD20617.1| beta-ketoadipate pathway transcriptional regulator,
          PcaR/PcaU/PobR family [Xanthomonas gardneri ATCC 19865]
          Length = 258

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +T     G+ VL   A H      +SQI+    IS   + ++L  L K G V    G +G
Sbjct: 14 MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAKLGYV----GEQG 67

Query: 63 -GVRL 66
           G  L
Sbjct: 68 RGYVL 72


>gi|91779398|ref|YP_554606.1| IclR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692058|gb|ABE35256.1| transcriptional regulator, IclR family [Burkholderia xenovorans
           LB400]
          Length = 293

 Score = 36.1 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 10  GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGV 64
            +R L           P  +SQ++    I +  L ++++ L   G V      RG   G+
Sbjct: 34  ALRALAVLEQLAAAGQPFSLSQLSLRLRIPKATLMRLIESLEAQGYVTHLPDSRGTDRGI 93

Query: 65  RLCRPADQITI 75
            L   A Q+ +
Sbjct: 94  TLGPKAAQLAL 104


>gi|291434965|ref|ZP_06574355.1| ROK-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291337860|gb|EFE64816.1| ROK-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 385

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGV 64
          +R LM      +     ++IA    IS+  +   ++ L +AG++       T RGR G  
Sbjct: 26 LRALM-----EEGRLTRAEIAARTGISKPTVSDSVRRLSEAGLLADTGERTTGRGRVGTY 80

Query: 65 R 65
           
Sbjct: 81 Y 81


>gi|282862958|ref|ZP_06272018.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
           ACTE]
 gi|282561940|gb|EFB67482.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
           ACTE]
          Length = 321

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R+L       + P   +++A    +S   + + L  L  AG+V   R
Sbjct: 260 RLLAEL----ETPASTTELARRTGLSRAGVSQCLTALRDAGLVSAHR 302


>gi|297570047|ref|YP_003691391.1| transcriptional regulator, ArsR family [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925962|gb|ADH86772.1| transcriptional regulator, ArsR family [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 136

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           +R++     H +    + ++A AC +    + + L+ L   G +E+ R GR+    +  P
Sbjct: 56  LRIVQILLDHEE---SVGELARACELPSHMVSEHLRLLKDRGFLESRRDGRKVFYSIAEP 112

Query: 70  ADQITILDVVKATEESF 86
           A    +  ++   EE F
Sbjct: 113 A----LASIMHCIEERF 125


>gi|256965551|ref|ZP_05569722.1| replication protein E [Enterococcus faecalis HIP11704]
 gi|305678688|ref|YP_003864107.1| RepE [Enterococcus faecalis]
 gi|256956047|gb|EEU72679.1| replication protein E [Enterococcus faecalis HIP11704]
 gi|304324942|gb|ADM24822.1| RepE [Enterococcus faecalis]
 gi|304324982|gb|ADM24861.1| RepE [Enterococcus faecalis]
 gi|304325023|gb|ADM24901.1| RepE [Enterococcus faecalis]
          Length = 496

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           +I EA  I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKEIREALSIPERTLDKLLKVLKANQEIFFKVKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|237749618|ref|ZP_04580098.1| hypothetical protein HRAG_02234 [Helicobacter bilis ATCC 43879]
 gi|229374786|gb|EEO25177.1| hypothetical protein HRAG_02234 [Helicobacter bilis ATCC 43879]
          Length = 184

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVR 58
            I++IAE   I+   L+KIL  LVK  + V++ R
Sbjct: 41 ISITKIAEHLNIARGHLYKILGKLVKRELIVKSCR 75


>gi|227833694|ref|YP_002835401.1| transcriptional regulator, arsR family [Corynebacterium
          aurimucosum ATCC 700975]
 gi|262184700|ref|ZP_06044121.1| transcriptional regulator, arsR family protein [Corynebacterium
          aurimucosum ATCC 700975]
 gi|227454710|gb|ACP33463.1| transcriptional regulator, arsR family [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 116

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60
          +R+L         P  ++++ E   +S+  +   L  L +AG++    RGR
Sbjct: 45 LRLLSILCDEGCGPMSVTELTELTALSQPTVSHHLARLREAGLLSRQQRGR 95


>gi|261367637|ref|ZP_05980520.1| transcriptional regulator, DeoR family [Subdoligranulum variabile
          DSM 15176]
 gi|282570427|gb|EFB75962.1| transcriptional regulator, DeoR family [Subdoligranulum variabile
          DSM 15176]
          Length = 303

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
                ++AE   +S   + + ++ L +AGI + T +G  GG+
Sbjct: 17 EQVTAPELAEQFEVSRRTIQRDIEALGRAGIPITTAQGAGGGI 59


>gi|188588841|ref|YP_001920916.1| transcriptional regulator, GntR family [Clostridium botulinum E3
          str. Alaska E43]
 gi|188499122|gb|ACD52258.1| transcriptional regulator, GntR family [Clostridium botulinum E3
          str. Alaska E43]
          Length = 132

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    + +++    I+   + K  + L + GI+ET+RG+ 
Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYRELEREGIIETLRGKG 72


>gi|182436331|ref|YP_001824050.1| GntR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178464847|dbj|BAG19367.1| putative GntR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
 gi|327187178|dbj|BAK08921.1| putative GntR family transcriptional regulator [Streptomyces
          griseus]
          Length = 134

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L ++  + +R  +      D    +  +A+   ++   + K  + L   G+V    G  
Sbjct: 21 QLVQQVRHALR--LGLLKEGDRLPTVKDVAKQMAVNPNTVLKAYRELEHDGLVAARPGVG 78


>gi|126466185|ref|YP_001041294.1| regulatory protein, ArsR [Staphylothermus marinus F1]
 gi|126015008|gb|ABN70386.1| regulatory protein, ArsR [Staphylothermus marinus F1]
          Length = 114

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 3  LTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRG 59
          L+ +T    R +L + + +N     I +++E   +    + K ++ L  AG+V +    G
Sbjct: 41 LSSKTR---RLILYHLSRNNG--LSIKELSEITRLPVSVISKHVKKLEDAGLVISGLKNG 95

Query: 60 RRG 62
           RG
Sbjct: 96 NRG 98


>gi|16759436|ref|NP_455053.1| solute-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|29142792|ref|NP_806134.1| solute-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|213645997|ref|ZP_03376050.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213850130|ref|ZP_03381028.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|289829267|ref|ZP_06546879.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
 gi|25511975|pir||AC0559 probable solute-binding protein STY0498 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501727|emb|CAD08915.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29138424|gb|AAO69994.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|320100459|ref|YP_004176051.1| putative AsnC family transcriptional regulator [Desulfurococcus
          mucosus DSM 2162]
 gi|319752811|gb|ADV64569.1| putative transcriptional regulator, AsnC family [Desulfurococcus
          mucosus DSM 2162]
          Length = 144

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRP 69
          L Y   H+      SQ+++   +    + +IL  L KAG+VE    T  GR+    L +P
Sbjct: 14 LKYLLKHSGQEIYQSQLSKELGVDPKVVSRILIKLEKAGVVERTPVTYEGRK--TFLVKP 71

Query: 70 ADQITILDVVKATEES 85
                  +VKA E+S
Sbjct: 72 VRD----KLVKAMEDS 83


>gi|239943015|ref|ZP_04694952.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989473|ref|ZP_04710137.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291446487|ref|ZP_06585877.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349434|gb|EFE76338.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 331

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           R L  CA+ +  P    ++A    +S     K    L  A ++ + R  RGG
Sbjct: 258 RALALCALSS--PCSTGELARRIGVSIGTASKHASVLRTAKLITSTR--RGG 305


>gi|229160406|ref|ZP_04288404.1| Transcriptional regulator, GntR [Bacillus cereus R309803]
 gi|228623130|gb|EEK79958.1| Transcriptional regulator, GntR [Bacillus cereus R309803]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|225026799|ref|ZP_03715991.1| hypothetical protein EUBHAL_01051 [Eubacterium hallii DSM 3353]
 gi|224955918|gb|EEG37127.1| hypothetical protein EUBHAL_01051 [Eubacterium hallii DSM 3353]
          Length = 123

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             D    +  +A    ++   + K L  L +  +V + R
Sbjct: 29 QPGDKLPSVRDLAAQAGVNPNTMQKALSELERENLVHSAR 68


>gi|242279976|ref|YP_002992105.1| ribonuclease BN [Desulfovibrio salexigens DSM 2638]
 gi|242122870|gb|ACS80566.1| ribonuclease BN [Desulfovibrio salexigens DSM 2638]
          Length = 456

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M   K +   + ++     ++++P  + ++A    +   F+  +L   V++GI+  ++G 
Sbjct: 316 MQ--KFSLLALSLMTMRFENSEHPYDLEELAGEIGVPVRFISPLLDRFVESGIL--IKGS 371

Query: 61  RGG---VRLCRPADQITILDVVKATEES 85
             G            +T+L V+     S
Sbjct: 372 EEGNELYSFAVSPRNLTMLQVMGILSGS 399


>gi|118467461|ref|YP_890908.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
 gi|118168748|gb|ABK69644.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
          Length = 245

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 15 MYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++  + +D    P  +  +A    ++ + + + L  L +  +VET RGR GG  + RPA
Sbjct: 27 IHLGLLDDGERLPVEV-DLAAQFGVAPMTVREALATLRELELVETRRGRSGGSFVRRPA 84


>gi|69244976|ref|ZP_00603166.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|115534849|ref|YP_783931.1| hypothetical protein pRE25p47 [Enterococcus faecalis]
 gi|255976308|ref|ZP_05426894.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|257080190|ref|ZP_05574551.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257090926|ref|ZP_05585287.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|296449278|ref|ZP_06891063.1| DeoR family transcriptional regulator [Clostridium difficile NAP08]
 gi|307283571|ref|ZP_07563754.1| HTH domain protein [Enterococcus faecalis TX0860]
 gi|312903593|ref|ZP_07762772.1| HTH domain protein [Enterococcus faecalis TX0635]
 gi|12957032|emb|CAC29202.1| hypothetical protein [Enterococcus faecalis]
 gi|68196142|gb|EAN10573.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|133919250|emb|CAL69041.1| hypothetical protein [Streptococcus pneumoniae]
 gi|138752659|emb|CAM32750.1| hypothetical protein [Streptococcus pneumoniae]
 gi|255969180|gb|EET99802.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256988220|gb|EEU75522.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256999738|gb|EEU86258.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|296261877|gb|EFH08687.1| DeoR family transcriptional regulator [Clostridium difficile NAP08]
 gi|306503595|gb|EFM72836.1| HTH domain protein [Enterococcus faecalis TX0860]
 gi|310633043|gb|EFQ16326.1| HTH domain protein [Enterococcus faecalis TX0635]
 gi|315162838|gb|EFU06855.1| HTH domain protein [Enterococcus faecalis TX0645]
 gi|319757838|gb|ADV69780.1| hypothetical protein SSUJS14_0691 [Streptococcus suis JS14]
 gi|323464891|gb|ADX77044.1| transcriptional regulator, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 190

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68
           +L+     +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L     
Sbjct: 10  ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65

Query: 69  -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124
            P    T  +V  A   +     C            +   + S+L+     +   L  
Sbjct: 66  LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122


>gi|326626801|gb|EGE33144.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|324325471|gb|ADY20731.1| GntR family transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|300933887|ref|ZP_07149143.1| ArsR family transcriptional regulator [Corynebacterium resistens
          DSM 45100]
          Length = 110

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +++L + A     P  ++++ E   +S+  +   L  L +AG++E  R
Sbjct: 39 LQLLSHIADTGCDPLTVNELTERTGLSQSTVSHHLGKLTEAGLLEKKR 86


>gi|297617464|ref|YP_003702623.1| biotin/acetyl-CoA-carboxylase ligase [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297145301|gb|ADI02058.1| biotin/acetyl-CoA-carboxylase ligase [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 349

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R+L     +       +++A    IS   ++K +  L K G  +  +     G RL
Sbjct: 33 RILSKLQQNQGEWVSGAELARELGISRTAVWKHIDSLRKEGYRITAI--PNQGYRL 86


>gi|284045497|ref|YP_003395837.1| GntR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949718|gb|ADB52462.1| transcriptional regulator, GntR family [Conexibacter woesei DSM
           14684]
          Length = 231

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 21/118 (17%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRP 69
           R ++   I       +  ++EA  IS   + + L  L KAG+V  E  RG R  V L R 
Sbjct: 29  RAILEGRIPPGQLTSVRALSEALGISRTPVREALVELAKAGMVAFERNRGVRVVVTLGRD 88

Query: 70  ADQI---TI-LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
            ++I    + L+V  A E    V  C  +                L + L+     L 
Sbjct: 89  VEEIFQLRLWLEVPAALE---AVPRCGGAE------------LEALARTLDGMRAHLD 131


>gi|291294735|ref|YP_003506133.1| Helix-turn-helix type 11 domain-containing protein [Meiothermus
          ruber DSM 1279]
 gi|290469694|gb|ADD27113.1| Helix-turn-helix type 11 domain protein [Meiothermus ruber DSM
          1279]
          Length = 321

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   +        +++A+   +S   + + ++ L  +G+ V   RG +GG RL
Sbjct: 9  ILLLLQTRGRATTAELAKRLEVSPRTIHRDMEALTASGVPVYAERGSKGGWRL 61


>gi|239820213|ref|YP_002947398.1| regulatory protein GntR HTH [Variovorax paradoxus S110]
 gi|239805066|gb|ACS22132.1| regulatory protein GntR HTH [Variovorax paradoxus S110]
          Length = 237

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          S++A    +S   + + L  L   GI+E+ RG  
Sbjct: 40 SELASQFGVSRPTVREALSRLRSDGIIESRRGSG 73


>gi|197264601|ref|ZP_03164675.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242856|gb|EDY25476.1| extracellular solute-binding protein, family 5 [Salmonella
          enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|166031104|ref|ZP_02233933.1| hypothetical protein DORFOR_00789 [Dorea formicigenerans ATCC
          27755]
 gi|166028951|gb|EDR47708.1| hypothetical protein DORFOR_00789 [Dorea formicigenerans ATCC
          27755]
          Length = 122

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++A    ++   + K L  L + G+V + R
Sbjct: 31 GDKLPSVRELAMEASVNPNTMQKALSELERIGLVHSRR 68


>gi|163731628|ref|ZP_02139075.1| phosphonates metabolism transcriptional regulator PhnF, putative
          [Roseobacter litoralis Och 149]
 gi|161395082|gb|EDQ19404.1| phosphonates metabolism transcriptional regulator PhnF, putative
          [Roseobacter litoralis Och 149]
          Length = 239

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     + +AE   ++   +   +  LV+ G+V T RG   G  +        I   V+
Sbjct: 30 GDKLPTEAALAERFGVNRHTVRHGISALVEEGLVRTRRGA--GAFVAATPTDYPIGKRVR 87


>gi|161615348|ref|YP_001589313.1| hypothetical protein SPAB_03119 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161364712|gb|ABX68480.1| hypothetical protein SPAB_03119 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|134045436|ref|YP_001096922.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C5]
 gi|132663061|gb|ABO34707.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C5]
          Length = 284

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          ++ P     IA+   +S  ++ K+L+PLV  G
Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49


>gi|118470828|ref|YP_889837.1| ArsR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172115|gb|ABK73011.1| transcriptional regulator, ArsR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 112

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 18/96 (18%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R+L+     N+ PN  + +AE   +S   L   L  L   G+V  V  GRR    L    
Sbjct: 24  RILLSL---NESPNYPADLAEQLGVSRQTLSNHLACLRGCGLVVAVPEGRRTRYELA--- 77

Query: 71  DQITILDVVKATEESFFVA-------ECFASHKIDC 99
               I    +A ++   +         C       C
Sbjct: 78  -DARIG---RALDDLMGLVLDVDPECRCVGPDGAVC 109


>gi|56414388|ref|YP_151463.1| solute-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|168818931|ref|ZP_02830931.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|56128645|gb|AAV78151.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|205344196|gb|EDZ30960.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|320084730|emb|CBY94521.1| HTH-type transcriptional regulator sgrR [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|134300310|ref|YP_001113806.1| signal-transduction protein [Desulfotomaculum reducens MI-1]
 gi|134053010|gb|ABO50981.1| putative signal-transduction protein with CBS domains
          [Desulfotomaculum reducens MI-1]
          Length = 211

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--- 57
          M L+KR +     ++   + ND P    QIAE   ++   L   L  L  AG +E     
Sbjct: 1  MELSKRQE----TIIEI-VKNDGPITGEQIAERLNLTRATLRPDLSILTMAGFLEARPRV 55

Query: 58 ----RGRRGGVRLCRPADQITILDV 78
               G+     L     ++ + +V
Sbjct: 56 GYYYNGKTADRILAEKITRLQVGEV 80


>gi|326382376|ref|ZP_08204068.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326199106|gb|EGD56288.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 111

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IR++             S +A A  +S       L  L  AG+V + R
Sbjct: 39 IRMMSLLMTDPTREMTASDLACAVGVSGGTATHHLNQLRGAGLVTSQR 86


>gi|322372839|ref|ZP_08047375.1| biotin-[acetyl-CoA-carboxylase] ligase [Streptococcus sp. C150]
 gi|321277881|gb|EFX54950.1| biotin-[acetyl-CoA-carboxylase] ligase [Streptococcus sp. C150]
          Length = 312

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP----AD 71
           A   D+      +A+   IS   ++K +Q L   GIV  +VR +  G RL +       
Sbjct: 11 LAKSPDF-VTGENLAKELGISRTAIWKAIQTLQNQGIVITSVRKK--GYRLEKGDILLPQ 67

Query: 72 QIT 74
           I+
Sbjct: 68 DIS 70


>gi|319937721|ref|ZP_08012124.1| hypothetical protein HMPREF9488_02960 [Coprobacillus sp. 29_1]
 gi|319807156|gb|EFW03770.1| hypothetical protein HMPREF9488_02960 [Coprobacillus sp. 29_1]
          Length = 155

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          L+  ++  D    ++Q+AE    S   + +I+  L + G + TV
Sbjct: 46 LICLSLFQDEEPTVNQLAEVMGSSHQNVKQIINKLEEKGFLITV 89


>gi|294813228|ref|ZP_06771871.1| Putative ArsR-family transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441662|ref|ZP_08216396.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325827|gb|EFG07470.1| Putative ArsR-family transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 378

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
             S++AE+  I+   + + L  L +AG+V T R  RG   L
Sbjct: 319 TTSELAESYGITAPEVSRHLGVLKRAGLVSTRR--RGRYVL 357


>gi|229149655|ref|ZP_04277885.1| Transcriptional regulator, GntR [Bacillus cereus m1550]
 gi|228633686|gb|EEK90285.1| Transcriptional regulator, GntR [Bacillus cereus m1550]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|168261106|ref|ZP_02683079.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Hadar str.
          RI_05P066]
 gi|204930608|ref|ZP_03221538.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Javiana
          str. GA_MM04042433]
 gi|204320542|gb|EDZ05745.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Javiana
          str. GA_MM04042433]
 gi|205349706|gb|EDZ36337.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Hadar str.
          RI_05P066]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|150021085|ref|YP_001306439.1| helix-turn-helix, type 11 domain-containing protein [Thermosipho
          melanesiensis BI429]
 gi|149793606|gb|ABR31054.1| Helix-turn-helix, type 11 domain protein [Thermosipho
          melanesiensis BI429]
          Length = 61

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
             P R S IA+   +    + K++  L K G VE+
Sbjct: 15 EGKPMRTSDIAKKLGVDTKVVSKLISELKKEGKVES 50


>gi|315644108|ref|ZP_07897278.1| transcriptional regulator, TrmB [Paenibacillus vortex V453]
 gi|315280483|gb|EFU43772.1| transcriptional regulator, TrmB [Paenibacillus vortex V453]
          Length = 125

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 1  MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M LT  T        R+ +   +    P  +  IAE   I +    K L+ L++AG+VE
Sbjct: 17 MELTTFTALAEPSRFRI-VDLLLRG--PMTVGDIAERLEIRQPQASKHLKVLLEAGLVE 72


>gi|257792117|ref|YP_003182723.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243]
 gi|325832574|ref|ZP_08165402.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
 gi|257476014|gb|ACV56334.1| transcriptional regulator, GntR family [Eggerthella lenta DSM 2243]
 gi|325485979|gb|EGC88438.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
          Length = 131

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76
            D    +  +A    ++   + K+   L + G +++ R R+G   L    +P   I +  
Sbjct: 34  GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSDKPGVSISSTA 92

Query: 77  DVVKATEESFFVAECFA 93
           ++V     S ++  CF 
Sbjct: 93  EIVT----SEYLKRCFE 105


>gi|205351766|ref|YP_002225567.1| solute-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205271547|emb|CAR36366.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|182437732|ref|YP_001825451.1| GntR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178466248|dbj|BAG20768.1| putative GntR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 143

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R L       D      ++ EA  I+   + K  + L + G+VE  RG
Sbjct: 27 QIVQQTKQALR-LGVL-EPGDRLPTAREVVEATAINPNTVLKAYRELEREGLVEARRG 82


>gi|16763837|ref|NP_459452.1| ABC transporter periplasmic binding protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. LT2]
 gi|167990441|ref|ZP_02571541.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|168240286|ref|ZP_02665218.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL486]
 gi|194451751|ref|YP_002044491.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|16418963|gb|AAL19411.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194410055|gb|ACF70274.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL476]
 gi|205331038|gb|EDZ17802.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar
          4,[5],12:i:- str. CVM23701]
 gi|205339787|gb|EDZ26551.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Heidelberg
          str. SL486]
 gi|261245739|emb|CBG23536.1| Putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267992173|gb|ACY87058.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          14028S]
 gi|301157067|emb|CBW16551.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312911489|dbj|BAJ35463.1| ABC transporter substrate binding protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. T000240]
 gi|321226034|gb|EFX51085.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|323128776|gb|ADX16206.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987405|gb|AEF06388.1| putative ABC transporter periplasmic binding protein [Salmonella
          enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|152974881|ref|YP_001374398.1| regulatory protein GntR HTH [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152023633|gb|ABS21403.1| regulatory protein GntR HTH [Bacillus cytotoxicus NVH 391-98]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +  Q L + GIV T RG  
Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELEREGIVITRRGMG 71


>gi|326407649|gb|ADZ64720.1| zinc transport transcription regulator [Lactococcus lactis subsp.
          lactis CV56]
          Length = 145

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A   +  +  ++IAE   IS   + K L+ L +  ++++ R
Sbjct: 41 HILMLLA---EQISTNAKIAEKLKISPAAVTKALKKLQEQELIKSGR 84


>gi|288916838|ref|ZP_06411211.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
 gi|288351723|gb|EFC85927.1| Helix-turn-helix type 11 domain protein [Frankia sp. EUN1f]
          Length = 324

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +++AE   ++   + + +  L   G  VE+  G RGG RL 
Sbjct: 24 AELAERLGVTTRTVRRDVDRLRDLGYPVESATGTRGGYRLG 64


>gi|229010759|ref|ZP_04167956.1| Transcriptional regulator, GntR [Bacillus mycoides DSM 2048]
 gi|229132260|ref|ZP_04261116.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST196]
 gi|228651198|gb|EEL07177.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST196]
 gi|228750433|gb|EEM00262.1| Transcriptional regulator, GntR [Bacillus mycoides DSM 2048]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|148256858|ref|YP_001241443.1| ArsR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409031|gb|ABQ37537.1| transcriptional regulator, ArsR family [Bradyrhizobium sp. BTAi1]
          Length = 111

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    +        ++A    + +  L   L  L +AG+V + R
Sbjct: 12 AFRLLV---QNEPQGLPAGELARLLEVPQNTLSAHLAVLARAGLVRSQR 57


>gi|119873454|ref|YP_931461.1| ATP-NAD/AcoX kinase [Pyrobaculum islandicum DSM 4184]
 gi|119674862|gb|ABL89118.1| ATP-NAD/AcoX kinase [Pyrobaculum islandicum DSM 4184]
          Length = 293

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           I    P   S+IA    +S   +   L+ L KAG+V+++
Sbjct: 242 IEERGPLAASEIAALSGLSPRTVRYALERLRKAGLVKSI 280


>gi|110668106|ref|YP_657917.1| hypothetical protein HQ2167A [Haloquadratum walsbyi DSM 16790]
 gi|109625853|emb|CAJ52293.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 307

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R L   A+H +    +S +A     S  +  ++++ L  AG+VET R
Sbjct: 7  VRALT--ALHGEQ--TVSDLATNLDRSLSYTSELVERLETAGLVETRR 50


>gi|86135961|ref|ZP_01054540.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          MED193]
 gi|85826835|gb|EAQ47031.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          MED193]
          Length = 249

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     +Q+A    ++   + + L  + + G+V   RG   GV +        I   V+
Sbjct: 37 GDKLPSEAQLAARFGVNRHTVRRALADMAEQGLVHARRGS--GVFVAATPTDYPIGKRVR 94


>gi|331086550|ref|ZP_08335628.1| hypothetical protein HMPREF0987_01931 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330410383|gb|EGG89815.1| hypothetical protein HMPREF0987_01931 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 327

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +       ++ E   +S   ++K++  L + G  +E VR +  G RL    D
Sbjct: 10 RESSGHVSGQELCERFQVSRTAIWKVISQLKEEGYEIEAVRNK--GYRLQESPD 61


>gi|323214493|gb|EFZ99244.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
          Length = 567

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|306833719|ref|ZP_07466846.1| MarR family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304424489|gb|EFM27628.1| MarR family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 146

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           ++Y   + D    I  I +   IS+     +++ + K G ++ +
Sbjct: 40 AVLYLHDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQII 84


>gi|295695053|ref|YP_003588291.1| transcriptional regulator, GntR family [Bacillus tusciae DSM
          2912]
 gi|295410655|gb|ADG05147.1| transcriptional regulator, GntR family [Bacillus tusciae DSM
          2912]
          Length = 131

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                + ++A    ++   + K  Q L + G++ET+RGR 
Sbjct: 33 GTRLPSVRELAVQLALNHNTVAKAYQELEREGLIETLRGRG 73


>gi|260907298|ref|ZP_05915620.1| ArsR family transcriptional regulator [Brevibacterium linens BL2]
          Length = 117

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 8  DYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          D  +R L              +P  +  IAE   +S+      L  L +AG+   VR
Sbjct: 10 DLSLRALADSNRRSILHAIRGHPLPVGSIAEVVGLSQQTTSHHLGVLRRAGLTVGVR 66


>gi|170782671|ref|YP_001711005.1| putative transcriptional regulator [Clavibacter michiganensis
          subsp. sepedonicus]
 gi|169157241|emb|CAQ02425.1| putative transcriptional regulator [Clavibacter michiganensis
          subsp. sepedonicus]
          Length = 235

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 5  KRTD--YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
           RTD  Y +  +         P    Q+AE   +S   + + L  L +AG+ +    GR 
Sbjct: 2  TRTDRLYAL--VEELRRVAPRPRSARQLAERFEVSSRTIERDLSALQQAGVPIWAEPGRT 59

Query: 62 GGV 64
          GG 
Sbjct: 60 GGY 62


>gi|145295747|ref|YP_001138568.1| hypothetical protein cgR_1673 [Corynebacterium glutamicum R]
 gi|140845667|dbj|BAF54666.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 101

 Score = 36.1 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L+    H      +S++A+   ++       LQ L   G+VE+ +
Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFK 74


>gi|262202998|ref|YP_003274206.1| DeoR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262086345|gb|ACY22313.1| Helix-turn-helix type 11 domain protein [Gordonia bronchialis DSM
          43247]
          Length = 324

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          ++A+   I+   + + +  L + G  V+   G  GG RL   A+
Sbjct: 25 ELADRLNITTRTVRRDVDKLRELGYPVDATVGVGGGYRLGAGAE 68


>gi|260433813|ref|ZP_05787784.1| transcriptional regulator, GntR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417641|gb|EEX10900.1| transcriptional regulator, GntR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 243

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           ++     S++A+   +S   + + L+ L    ++ T RG  GG  + R       + QIT
Sbjct: 31  DERLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGGAFVNRLSFQDAYSQQIT 90

Query: 75  ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119
              ++ +  E  F   C A + ++  C PL         L       F
Sbjct: 91  TSTLLLSMNEVSFDTACEARYALERACAPLSAQRRTADQLATMRAEIF 138


>gi|302873483|ref|YP_003842116.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
 gi|307688338|ref|ZP_07630784.1| transcriptional regulator, GntR family protein [Clostridium
          cellulovorans 743B]
 gi|302576340|gb|ADL50352.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
          Length = 124

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
            D    + ++AE   ++   + +  Q L +  I+ T RG   G  + + + +I
Sbjct: 30 EGDKLLSVREMAEKYSVNPNTIQRAYQELERNNIIYTQRGM--GTFITKDSSKI 81


>gi|213586411|ref|ZP_03368237.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|108802062|ref|YP_642259.1| hypothetical protein Mmcs_5099 [Mycobacterium sp. MCS]
 gi|119871214|ref|YP_941166.1| hypothetical protein Mkms_5187 [Mycobacterium sp. KMS]
 gi|126438041|ref|YP_001073732.1| hypothetical protein Mjls_5478 [Mycobacterium sp. JLS]
 gi|108772481|gb|ABG11203.1| hypothetical protein Mmcs_5099 [Mycobacterium sp. MCS]
 gi|119697303|gb|ABL94376.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126237841|gb|ABO01242.1| conserved hypothetical protein [Mycobacterium sp. JLS]
          Length = 119

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRR 61
           LT  T     VL+  A          +++    I+E  +  IL  LV  G + ++  GRR
Sbjct: 37  LTNHT----HVLLCLA--QSGSLTARELSLRIGITERSVQAILADLVADGYLTKSKVGRR 90

Query: 62  GGV------RLCRPADQI-TILDVVKAT 82
                    RL  P +   T+ +++ A 
Sbjct: 91  NSYTINPKGRLRHPLESAHTVGELIAAL 118


>gi|91780404|ref|YP_555611.1| IclR family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91693064|gb|ABE36261.1| transcriptional regulator, IclR family [Burkholderia xenovorans
          LB400]
          Length = 265

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R   ++ + A H       ++I++A  I +  L  +L  L + G +E
Sbjct: 5  ALRVLEIMEFVATHKAGCATHTEISQALGIPKSSLTALLTDLQRPGYLE 53


>gi|86740246|ref|YP_480646.1| GntR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567108|gb|ABD10917.1| transcriptional regulator, GntR family [Frankia sp. CcI3]
          Length = 234

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++     +S   L + ++ L   GI+   RG  GG+   RP
Sbjct: 36 ELLARLGVSRPSLRQAVRLLQAEGILTVRRGHHGGLYGQRP 76


>gi|18313234|ref|NP_559901.1| hypothetical protein PAE2282 [Pyrobaculum aerophilum str. IM2]
 gi|18160752|gb|AAL64083.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 239

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-----VRLCRP 69
          +Y A+     +    +AEA  I    ++  ++ L   G+V      +GG      R   P
Sbjct: 20 IYLALVERGESTARDLAEALNIPYTKVYAYIERLRDMGLVI----PQGGSRPLKYR-AVP 74

Query: 70 ADQI 73
            ++
Sbjct: 75 PAEV 78


>gi|30261454|ref|NP_843831.1| GntR family transcriptional regulator [Bacillus anthracis str.
          Ames]
 gi|47526646|ref|YP_017995.1| GntR family transcriptional regulator [Bacillus anthracis str.
          'Ames Ancestor']
 gi|47566243|ref|ZP_00237271.1| transcriptional regulator, GntR family [Bacillus cereus G9241]
 gi|49184288|ref|YP_027540.1| GntR family transcriptional regulator [Bacillus anthracis str.
          Sterne]
 gi|49480106|ref|YP_035578.1| GntR family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|52143983|ref|YP_082844.1| GntR family transcriptional regulator [Bacillus cereus E33L]
 gi|118476923|ref|YP_894074.1| GntR family transcriptional regulator [Bacillus thuringiensis
          str. Al Hakam]
 gi|165870455|ref|ZP_02215110.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0488]
 gi|167634273|ref|ZP_02392594.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0442]
 gi|167639211|ref|ZP_02397483.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0193]
 gi|170686806|ref|ZP_02878026.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0465]
 gi|170706242|ref|ZP_02896703.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0389]
 gi|177651459|ref|ZP_02934248.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0174]
 gi|190568022|ref|ZP_03020932.1| transcriptional regulator, GntR family [Bacillus anthracis
          Tsiankovskii-I]
 gi|196035343|ref|ZP_03102748.1| transcriptional regulator, GntR family [Bacillus cereus W]
 gi|196040640|ref|ZP_03107939.1| transcriptional regulator, GntR family [Bacillus cereus
          NVH0597-99]
 gi|196046530|ref|ZP_03113755.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108]
 gi|206977605|ref|ZP_03238498.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97]
 gi|217958932|ref|YP_002337480.1| transcriptional regulator, GntR family [Bacillus cereus AH187]
 gi|218902562|ref|YP_002450396.1| transcriptional regulator, GntR family [Bacillus cereus AH820]
 gi|222095089|ref|YP_002529149.1| transcriptional regulator, gntr family [Bacillus cereus Q1]
 gi|225863318|ref|YP_002748696.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102]
 gi|227815797|ref|YP_002815806.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          CDC 684]
 gi|228914026|ref|ZP_04077648.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228926486|ref|ZP_04089557.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932737|ref|ZP_04095608.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228945051|ref|ZP_04107412.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228984530|ref|ZP_04144707.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229029126|ref|ZP_04185223.1| Transcriptional regulator, GntR [Bacillus cereus AH1271]
 gi|229090409|ref|ZP_04221651.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-42]
 gi|229120995|ref|ZP_04250236.1| Transcriptional regulator, GntR [Bacillus cereus 95/8201]
 gi|229138144|ref|ZP_04266741.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST26]
 gi|229155021|ref|ZP_04283135.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 4342]
 gi|229172095|ref|ZP_04299660.1| Transcriptional regulator, GntR [Bacillus cereus MM3]
 gi|229183647|ref|ZP_04310870.1| Transcriptional regulator, GntR [Bacillus cereus BGSC 6E1]
 gi|229189535|ref|ZP_04316551.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 10876]
 gi|229195653|ref|ZP_04322419.1| Transcriptional regulator, GntR [Bacillus cereus m1293]
 gi|229603260|ref|YP_002865868.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0248]
 gi|254682482|ref|ZP_05146343.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. CNEVA-9066]
 gi|254726145|ref|ZP_05187927.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. A1055]
 gi|254733898|ref|ZP_05191612.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Western North America USA6153]
 gi|254740412|ref|ZP_05198103.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Kruger B]
 gi|254753803|ref|ZP_05205838.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Vollum]
 gi|254758898|ref|ZP_05210925.1| transcriptional regulator, GntR family protein [Bacillus
          anthracis str. Australia 94]
 gi|300118597|ref|ZP_07056336.1| transcriptional regulator, GntR family protein [Bacillus cereus
          SJ1]
 gi|301052994|ref|YP_003791205.1| GntR family transcriptional regulator [Bacillus anthracis CI]
 gi|30255308|gb|AAP25317.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          Ames]
 gi|47501794|gb|AAT30470.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          'Ames Ancestor']
 gi|47556796|gb|EAL15127.1| transcriptional regulator, GntR family [Bacillus cereus G9241]
 gi|49178215|gb|AAT53591.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          Sterne]
 gi|49331662|gb|AAT62308.1| transcriptional regulator, GntR family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51977452|gb|AAU19002.1| transcriptional regulator, GntR family [Bacillus cereus E33L]
 gi|118416148|gb|ABK84567.1| transcriptional regulator, GntR family [Bacillus thuringiensis
          str. Al Hakam]
 gi|164713950|gb|EDR19472.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0488]
 gi|167512650|gb|EDR88024.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0193]
 gi|167530161|gb|EDR92887.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0442]
 gi|170128776|gb|EDS97642.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0389]
 gi|170669329|gb|EDT20072.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0465]
 gi|172082737|gb|EDT67800.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0174]
 gi|190560756|gb|EDV14731.1| transcriptional regulator, GntR family [Bacillus anthracis
          Tsiankovskii-I]
 gi|195992020|gb|EDX55983.1| transcriptional regulator, GntR family [Bacillus cereus W]
 gi|196022714|gb|EDX61396.1| transcriptional regulator, GntR family [Bacillus cereus 03BB108]
 gi|196028430|gb|EDX67038.1| transcriptional regulator, GntR family [Bacillus cereus
          NVH0597-99]
 gi|206744178|gb|EDZ55592.1| transcriptional regulator, GntR family [Bacillus cereus H3081.97]
 gi|217065481|gb|ACJ79731.1| transcriptional regulator, GntR family [Bacillus cereus AH187]
 gi|218536278|gb|ACK88676.1| transcriptional regulator, GntR family [Bacillus cereus AH820]
 gi|221239147|gb|ACM11857.1| transcriptional regulator, GntR family [Bacillus cereus Q1]
 gi|225786539|gb|ACO26756.1| transcriptional regulator, GntR family [Bacillus cereus 03BB102]
 gi|227003946|gb|ACP13689.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          CDC 684]
 gi|228587902|gb|EEK45954.1| Transcriptional regulator, GntR [Bacillus cereus m1293]
 gi|228593980|gb|EEK51783.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 10876]
 gi|228599890|gb|EEK57487.1| Transcriptional regulator, GntR [Bacillus cereus BGSC 6E1]
 gi|228611438|gb|EEK68695.1| Transcriptional regulator, GntR [Bacillus cereus MM3]
 gi|228628579|gb|EEK85292.1| Transcriptional regulator, GntR [Bacillus cereus ATCC 4342]
 gi|228645286|gb|EEL01521.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST26]
 gi|228662427|gb|EEL18026.1| Transcriptional regulator, GntR [Bacillus cereus 95/8201]
 gi|228692897|gb|EEL46616.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-42]
 gi|228732184|gb|EEL83069.1| Transcriptional regulator, GntR [Bacillus cereus AH1271]
 gi|228775233|gb|EEM23622.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228814720|gb|EEM60980.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228826891|gb|EEM72654.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228833074|gb|EEM78640.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228845631|gb|EEM90660.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229267668|gb|ACQ49305.1| transcriptional regulator, GntR family [Bacillus anthracis str.
          A0248]
 gi|298724121|gb|EFI64824.1| transcriptional regulator, GntR family protein [Bacillus cereus
          SJ1]
 gi|300375163|gb|ADK04067.1| transcriptional regulator, GntR family [Bacillus cereus biovar
          anthracis str. CI]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|329941263|ref|ZP_08290542.1| transcriptional repressor [Streptomyces griseoaurantiacus M045]
 gi|329299794|gb|EGG43693.1| transcriptional repressor [Streptomyces griseoaurantiacus M045]
          Length = 325

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          ++AE   +S   + + +  L + G  V   RG  GG RL      P 
Sbjct: 28 ELAERLGVSRRTVRRDVDRLRELGYPVRASRGAEGGYRLVAGTAMPP 74


>gi|322614734|gb|EFY11663.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322618840|gb|EFY15728.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322623547|gb|EFY20386.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322629154|gb|EFY25933.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322631875|gb|EFY28629.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322637388|gb|EFY34090.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322642073|gb|EFY38683.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322647892|gb|EFY44367.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652365|gb|EFY48720.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322653268|gb|EFY49601.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660583|gb|EFY56819.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322664735|gb|EFY60928.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322669212|gb|EFY65362.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670757|gb|EFY66890.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322679004|gb|EFY75059.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682033|gb|EFY78058.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322685138|gb|EFY81135.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323192968|gb|EFZ78191.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323196950|gb|EFZ82092.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323203935|gb|EFZ88952.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323206980|gb|EFZ91933.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323214183|gb|EFZ98941.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323219165|gb|EGA03662.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226999|gb|EGA11180.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323230183|gb|EGA14303.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233921|gb|EGA18010.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323238385|gb|EGA22443.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323244072|gb|EGA28081.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323251859|gb|EGA35722.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323257855|gb|EGA41534.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323261131|gb|EGA44723.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323264939|gb|EGA48438.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323272502|gb|EGA55909.1| extracellular solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 566

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|320450542|ref|YP_004202638.1| transcriptional repressor [Thermus scotoductus SA-01]
 gi|320150711|gb|ADW22089.1| transcriptional repressor [Thermus scotoductus SA-01]
          Length = 223

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++ L         P     +AE   +    + ++L+ L   G+VE       G RL 
Sbjct: 12 DY-LKQLFLLEAERQGPVPTQALAERLGVKPPSVTEMLKKLTALGLVE--HAPYQGARLT 68

Query: 68 RPADQITILDVVK 80
              +I + +V++
Sbjct: 69 EAGRRIAL-EVLR 80


>gi|294142949|ref|YP_003558927.1| birA bifunctional protein [Shewanella violacea DSS12]
 gi|293329418|dbj|BAJ04149.1| birA bifunctional protein [Shewanella violacea DSS12]
          Length = 309

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
          A+  +      ++A+   IS   + K +  L   G+ + +V+G+  G +L  P   I
Sbjct: 3  ALSGEQFVSGEELAKQAGISRTAISKHIDSLEDYGVEIFSVKGK--GYKLANPVSLI 57


>gi|269216217|ref|ZP_06160071.1| iron-dependent transcriptional regulator [Slackia exigua ATCC
          700122]
 gi|269130476|gb|EEZ61554.1| iron-dependent transcriptional regulator [Slackia exigua ATCC
          700122]
          Length = 142

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY +  ++  A     P R   +A    +S+  + K L  L     VE  +   G V L 
Sbjct: 24 DY-LEAIVDLAGPERKPIRAVDLANKLDVSKASVSKALTTLKAKSYVE--QPYYGDVTLT 80

Query: 68 RPADQI 73
             ++ 
Sbjct: 81 EEGEEY 86


>gi|289578232|ref|YP_003476859.1| MarR family transcriptional regulator [Thermoanaerobacter
          italicus Ab9]
 gi|289527945|gb|ADD02297.1| transcriptional regulator, MarR family [Thermoanaerobacter
          italicus Ab9]
          Length = 146

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          V++  + +   P  +  IA    IS   L  I+  LV+ G+V+
Sbjct: 44 VIIILSENKSNPMYMKDIALELGISPSTLTSIVDKLVEKGLVQ 86


>gi|186476223|ref|YP_001857693.1| IclR family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184192682|gb|ACC70647.1| transcriptional regulator, IclR family [Burkholderia phymatum
          STM815]
          Length = 268

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTDLHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|153012048|ref|YP_001373259.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188]
 gi|151563936|gb|ABS17430.1| regulatory protein ArsR [Ochrobactrum anthropi ATCC 49188]
          Length = 115

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP- 69
           R+++ C++       + ++ E   + +  L + L  L  +GIVET R G++   RL    
Sbjct: 39  RLMIVCSLVEGE-YSVGRMEEKIGVHQPHLSQHLTVLRSSGIVETRREGKQIFYRLTEEK 97

Query: 70  ADQI--TILDVV 79
           A Q+  ++ D+ 
Sbjct: 98  AAQLVASLYDIF 109


>gi|30019506|ref|NP_831137.1| GntR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|206968030|ref|ZP_03228986.1| transcriptional regulator, GntR family [Bacillus cereus AH1134]
 gi|218231280|ref|YP_002366136.1| transcriptional regulator, GntR family [Bacillus cereus B4264]
 gi|228907085|ref|ZP_04070949.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 200]
 gi|228920166|ref|ZP_04083514.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228957730|ref|ZP_04119473.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229043196|ref|ZP_04190918.1| Transcriptional regulator, GntR [Bacillus cereus AH676]
 gi|229069006|ref|ZP_04202299.1| Transcriptional regulator, GntR [Bacillus cereus F65185]
 gi|229078639|ref|ZP_04211195.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-2]
 gi|229108911|ref|ZP_04238514.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-15]
 gi|229126770|ref|ZP_04255782.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-Cer4]
 gi|229177860|ref|ZP_04305233.1| Transcriptional regulator, GntR [Bacillus cereus 172560W]
 gi|296502034|ref|YP_003663734.1| GntR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|29895050|gb|AAP08338.1| Transcriptional regulator, GntR family [Bacillus cereus ATCC
          14579]
 gi|206736950|gb|EDZ54097.1| transcriptional regulator, GntR family [Bacillus cereus AH1134]
 gi|218159237|gb|ACK59229.1| transcriptional regulator, GntR family [Bacillus cereus B4264]
 gi|228605651|gb|EEK63099.1| Transcriptional regulator, GntR [Bacillus cereus 172560W]
 gi|228656710|gb|EEL12536.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-Cer4]
 gi|228674512|gb|EEL29753.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-15]
 gi|228704642|gb|EEL57072.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-2]
 gi|228714118|gb|EEL66000.1| Transcriptional regulator, GntR [Bacillus cereus F65185]
 gi|228726057|gb|EEL77292.1| Transcriptional regulator, GntR [Bacillus cereus AH676]
 gi|228801923|gb|EEM48797.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228839365|gb|EEM84658.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228852589|gb|EEM97379.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 200]
 gi|296323086|gb|ADH06014.1| GntR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 126

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|20094014|ref|NP_613861.1| transcriptional regulator [Methanopyrus kandleri AV19]
 gi|19886985|gb|AAM01791.1| Predicted transcriptional regulator [Methanopyrus kandleri AV19]
          Length = 129

 Score = 36.1 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--RRGGVR-LCRPA 70
           + P  +  +AE    S     K+LQ LV+ G+VE  R     GG R L RPA
Sbjct: 47 EEAPFTVEDVAEIINRSRSTAQKMLQSLVRVGMVERERETLPGGGRRYLYRPA 99


>gi|326939077|gb|AEA14973.1| GntR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 126

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|315441507|ref|YP_004074384.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
 gi|315265162|gb|ADU01903.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
          Length = 119

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 1  MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L    D   ++++               +A    +SE  +   L  L KAG+V + R
Sbjct: 34 MRLKALADPVRVKMMSLLFSSRPGEETSGDLAAVLDLSESTVSHHLGQLRKAGLVISDR 92


>gi|255102269|ref|ZP_05331246.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
          Length = 320

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++D      QIAE   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LNSDKKITAKQIAEKLEINIRTVYRYIDVLSASGVPIISDTGHNGGYSL 62


>gi|254464403|ref|ZP_05077814.1| phosphonates metabolism transcriptional regulator PhnF
          [Rhodobacterales bacterium Y4I]
 gi|206685311|gb|EDZ45793.1| phosphonates metabolism transcriptional regulator PhnF
          [Rhodobacterales bacterium Y4I]
          Length = 237

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
          +Q++    ++   + + L  +   G+V + RG   GV +        I   V+
Sbjct: 33 AQLSARFGVNRHTVRRALADMAAQGLVHSRRGA--GVFVAAKPTDYPIGKRVR 83


>gi|209883390|ref|YP_002287247.1| transcriptional regulator, ArsR family [Oligotropha
          carboxidovorans OM5]
 gi|209871586|gb|ACI91382.1| transcriptional regulator, ArsR family [Oligotropha
          carboxidovorans OM5]
          Length = 123

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A H         IA    +    +   L  L +AG++E  R
Sbjct: 25 LAEHEPDGLAAGDIARRLDVPHNTMSTHLATLTRAGLIEAER 66


>gi|126700761|ref|YP_001089658.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|255308129|ref|ZP_05352300.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|115252198|emb|CAJ70036.1| Transcriptional regulator, DeoR family [Clostridium difficile]
          Length = 320

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++D      QIAE   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LNSDKKITAKQIAEKLEINIRTVYRYIDVLSASGVPIISDTGHNGGYSL 62


>gi|54025203|ref|YP_119445.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016711|dbj|BAD58081.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 218

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITIL 76
           A+    P   ++++E   IS   L + ++ L + G++    G RG  RL  R  D+  I 
Sbjct: 32  ALAPSSPLVETELSEKLAISRGTLREAMRQLQQEGLITA--GPRG--RLYVRHLDEKEIR 87

Query: 77  DV--VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           D+  V+A  ES  V E                L   LR+AL+A      ++S++ 
Sbjct: 88  DIFAVRAALESLAVRELAE-------RTDRAELIPTLRRALDAMAR--AEHSLDE 133


>gi|19552837|ref|NP_600839.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62390508|ref|YP_225910.1| transcription regulator ArsR [Corynebacterium glutamicum ATCC
          13032]
 gi|21324394|dbj|BAB99018.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325845|emb|CAF21634.1| Bacterial regulatory protein, arsR family [Corynebacterium
          glutamicum ATCC 13032]
          Length = 101

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L+    H      +S++A+   ++       LQ L   G+VE+ +
Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFK 74


>gi|226942674|ref|YP_002797747.1| GntR family transcriptional regulator [Azotobacter vinelandii DJ]
 gi|226717601|gb|ACO76772.1| Transcriptional regulatory protein, GntR family [Azotobacter
           vinelandii DJ]
          Length = 252

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 17/109 (15%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71
            +     S+I EA  +S   + + +  L  +G VET  G            G R+     
Sbjct: 37  GEKLPTESEIMEAHGVSRTVVREAISRLQASGTVETRHGIGTFVLDTPSSSGFRI--DPA 94

Query: 72  QI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
            I T+ DV+   E    +  EC            S    + +R AL+AF
Sbjct: 95  TIVTLRDVMAILELRVSLEVECAGLAA----RRRSAEQLAAMRAALDAF 139


>gi|327356498|gb|EGE85355.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 826

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +RV++       YPNR+   A+    +   + +I   L K G +    G +
Sbjct: 519 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 566


>gi|317488735|ref|ZP_07947271.1| gntR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912166|gb|EFV33739.1| gntR family Bacterial regulatory protein [Eggerthella sp.
           1_3_56FAA]
          Length = 131

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---CRPADQI-TIL 76
            D    +  +A    ++   + K+   L + G +++ R R+G   L    +P   I +  
Sbjct: 34  GDQLPTVRGLAADVEVNYNTVSKVYMSLEQDGYIQSKR-RQGAFVLDVSDKPGVSISSTA 92

Query: 77  DVVKATEESFFVAECFA 93
           ++V     S ++  CF 
Sbjct: 93  EIVT----SEYLKRCFE 105


>gi|311281117|ref|YP_003943348.1| regulatory protein GntR HTH [Enterobacter cloacae SCF1]
 gi|308750312|gb|ADO50064.1| regulatory protein GntR HTH [Enterobacter cloacae SCF1]
          Length = 256

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +A+   +S + + + L  L    ++ TVRGR GG
Sbjct: 58 ADLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 93


>gi|307330826|ref|ZP_07609961.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
 gi|306883539|gb|EFN14590.1| Helix-turn-helix type 11 domain protein [Streptomyces
          violaceusniger Tu 4113]
          Length = 326

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +++A    ++E  + + +  L + G  V+++ G  GG R
Sbjct: 24 AELARHLDVTERTVRRDIDRLRELGYGVQSIPGPGGGYR 62


>gi|284042388|ref|YP_003392728.1| hypothetical protein Cwoe_0920 [Conexibacter woesei DSM 14684]
 gi|283946609|gb|ADB49353.1| Helix-turn-helix type 11 domain protein [Conexibacter woesei DSM
          14684]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
           ++A+   +S   + + +  L + G  V+ + G  GG RL      P 
Sbjct: 24 QELADRLDVSCRTIRRDVDRLRELGYPVDALTGPNGGYRLHAGTAMPP 71


>gi|270261317|ref|ZP_06189590.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044801|gb|EFA17892.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 103

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     + ++A+   I +  L + L  L + G+V T R
Sbjct: 26 LLLLCQLSQREMSVGELAQTLGIRQPTLSQQLSVLRQEGLVSTRR 70


>gi|239608033|gb|EEQ85020.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis ER-3]
          Length = 696

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +RV++       YPNR+   A+    +   + +I   L K G +    G +
Sbjct: 389 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 436


>gi|261200068|ref|XP_002626435.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis SLH14081]
 gi|239594643|gb|EEQ77224.1| meiosis specific protein Hop1 [Ajellomyces dermatitidis SLH14081]
          Length = 764

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +RV++       YPNR+   A+    +   + +I   L K G +    G +
Sbjct: 531 ALRVII----EEGYPNRVRDFAQKLNCNGQTIVQITDMLRKQGFLLATPGSK 578


>gi|223983867|ref|ZP_03634030.1| hypothetical protein HOLDEFILI_01311 [Holdemania filiformis DSM
           12042]
 gi|223964168|gb|EEF68517.1| hypothetical protein HOLDEFILI_01311 [Holdemania filiformis DSM
           12042]
          Length = 299

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5   KRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
             T Y I R + Y   H      + ++A++  ISE++L+K+ + 
Sbjct: 182 SSTRYLISRAVSYVYQHIGDHLTVKEVADSLNISEIYLYKLFKE 225


>gi|118463658|ref|YP_880734.1| transcriptional regulator [Mycobacterium avium 104]
 gi|118164945|gb|ABK65842.1| putative transcriptional regulator [Mycobacterium avium 104]
          Length = 118

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 1  MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L    D  +RV LM      D       +A A  +SE  +   L  L  AG V + R
Sbjct: 34 MRLKALAD-PVRVKLMSLLFTADGTCTTGSLAAAVGLSESTVSHHLGQLRTAGFVASDR 91


>gi|111021113|ref|YP_704085.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820643|gb|ABG95927.1| possible transcriptional regulator, ArsR family protein
          [Rhodococcus jostii RHA1]
          Length = 119

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          I+++      +D       +A    +SE  +   L  L KAG+V++VR
Sbjct: 45 IKLMSILLTASDGEVCTCDLATGVGLSESTVSHHLGQLKKAGMVQSVR 92


>gi|52144402|ref|YP_082427.1| hypothetical protein BCZK0823 [Bacillus cereus E33L]
 gi|51977871|gb|AAU19421.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 251

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     RIS++AE   + E  +      +  AGI +ET +GR GG  L 
Sbjct: 10 MIEL-LHARGKMRISELAEILEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63


>gi|24380380|ref|NP_722335.1| putative transcriptional regulator; repressor of the trehalose
          operon [Streptococcus mutans UA159]
 gi|21217544|gb|AAM43947.1|AF510742_1 TreR [Streptococcus mutans]
 gi|24378401|gb|AAN59641.1|AE015026_5 putative transcriptional regulator; repressor of the trehalose
          operon [Streptococcus mutans UA159]
          Length = 237

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     ++++    S   + K LQ L KAG ++TV+GR 
Sbjct: 23 GDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRG 63


>gi|330807595|ref|YP_004352057.1| GntR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375703|gb|AEA67053.1| putative Transcription factor, GntR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 247

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------ADQI-TILDVVK 80
           I EA  +S   + + L  L  AG+VET  G  G   L  P           I T+ DV+ 
Sbjct: 44  IMEAEGVSRSVVREALSRLQAAGLVETRHGV-GTFVLDMPAPEGFTLGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|322833685|ref|YP_004213712.1| IclR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168886|gb|ADW74585.1| transcriptional regulator, IclR family [Rahnella sp. Y9602]
          Length = 264

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
             +L     H      +  IA    +    + +I+  L + G+V +     GGVRL 
Sbjct: 21 AATILNSLGKHPQG-MSLGAIANEVDLPRSTVQRIVAALAEEGLVRSE--GSGGVRLG 75


>gi|307195522|gb|EFN77408.1| Histone-lysine N-methyltransferase SETMAR [Harpegnathos saltator]
          Length = 137

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           I+ ++     +D  N    IAE   +S  F+ K    L K G V+
Sbjct: 76  IKAIID----SDRHNTTRDIAEKLNVSHTFIEK---NLKKLGYVK 113


>gi|297156278|gb|ADI05990.1| DeoR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 328

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                ++AE   +S   + + ++ L  AG+ V T RG RGG+ L
Sbjct: 17 GQTSARELAERLEVSVRTVMRDVEALSAAGVPVYTERGARGGIAL 61


>gi|296501406|ref|YP_003663106.1| DeoR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|296322458|gb|ADH05386.1| DeoR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 322

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70


>gi|284044744|ref|YP_003395084.1| drug resistance transporter EmrB/QacA subfamily [Conexibacter
           woesei DSM 14684]
 gi|283948965|gb|ADB51709.1| drug resistance transporter, EmrB/QacA subfamily [Conexibacter
           woesei DSM 14684]
          Length = 666

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            + +L   A H   P  ++ +A  C ++   L      L  AG VE   G  G + L   
Sbjct: 553 ALWLLARIAEH--EPVTLAHVATHCGVAHRRLVTPFSELADAGYVE---GEGGALTLTPA 607

Query: 70  ADQITILDV 78
              I +  V
Sbjct: 608 GAAIRVRMV 616


>gi|269128744|ref|YP_003302114.1| Helix-turn-helix type 11 domain-containing protein
          [Thermomonospora curvata DSM 43183]
 gi|268313702|gb|ACZ00077.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   +    + + +  L + G  V++  G  GG RL 
Sbjct: 22 TGAELAERLQVGLRTVRRDIDRLRELGYPVDSTPGVAGGYRLG 64


>gi|228919502|ref|ZP_04082866.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228840145|gb|EEM85422.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 328

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72


>gi|228951139|ref|ZP_04113255.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228808549|gb|EEM55052.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|228957068|ref|ZP_04118841.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228802614|gb|EEM49458.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|228963745|ref|ZP_04124887.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228795981|gb|EEM43447.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 328

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72


>gi|228937886|ref|ZP_04100514.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228970767|ref|ZP_04131407.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977342|ref|ZP_04137737.1| Transcriptional regulator, DeoR [Bacillus thuringiensis Bt407]
 gi|228782319|gb|EEM30502.1| Transcriptional regulator, DeoR [Bacillus thuringiensis Bt407]
 gi|228788892|gb|EEM36831.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228821792|gb|EEM67792.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326938365|gb|AEA14261.1| DeoR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|228983849|ref|ZP_04144044.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228775898|gb|EEM24269.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 331

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229010079|ref|ZP_04167293.1| Transcriptional regulator, DeoR [Bacillus mycoides DSM 2048]
 gi|228751212|gb|EEM01024.1| Transcriptional regulator, DeoR [Bacillus mycoides DSM 2048]
          Length = 326

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70


>gi|229042510|ref|ZP_04190255.1| Transcriptional regulator, DeoR [Bacillus cereus AH676]
 gi|228726863|gb|EEL78075.1| Transcriptional regulator, DeoR [Bacillus cereus AH676]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229056421|ref|ZP_04195834.1| Transcriptional regulator, DeoR [Bacillus cereus AH603]
 gi|228720895|gb|EEL72444.1| Transcriptional regulator, DeoR [Bacillus cereus AH603]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229068333|ref|ZP_04201636.1| Transcriptional regulator, DeoR [Bacillus cereus F65185]
 gi|228714794|gb|EEL66666.1| Transcriptional regulator, DeoR [Bacillus cereus F65185]
          Length = 313

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229077961|ref|ZP_04210570.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2]
 gi|228705299|gb|EEL57676.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229083883|ref|ZP_04216192.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-44]
 gi|228699461|gb|EEL52137.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-44]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229101409|ref|ZP_04232152.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28]
 gi|228681985|gb|EEL36119.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28]
          Length = 316

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 24 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 64


>gi|229108257|ref|ZP_04237879.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15]
 gi|228675273|gb|EEL30495.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229131592|ref|ZP_04260474.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST196]
 gi|228651818|gb|EEL07773.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST196]
          Length = 326

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 70


>gi|229137448|ref|ZP_04266059.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST26]
 gi|228646006|gb|EEL02229.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST26]
          Length = 331

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229148986|ref|ZP_04277231.1| Transcriptional regulator, DeoR [Bacillus cereus m1550]
 gi|228634526|gb|EEK91110.1| Transcriptional regulator, DeoR [Bacillus cereus m1550]
          Length = 331

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229154350|ref|ZP_04282470.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 4342]
 gi|228629174|gb|EEK85881.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 4342]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|229159728|ref|ZP_04287737.1| Transcriptional regulator, DeoR [Bacillus cereus R309803]
 gi|228623753|gb|EEK80570.1| Transcriptional regulator, DeoR [Bacillus cereus R309803]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229165593|ref|ZP_04293367.1| Transcriptional regulator, DeoR [Bacillus cereus AH621]
 gi|228617876|gb|EEK74927.1| Transcriptional regulator, DeoR [Bacillus cereus AH621]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229177173|ref|ZP_04304562.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W]
 gi|228606354|gb|EEK63786.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W]
          Length = 313

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|229194966|ref|ZP_04321747.1| Transcriptional regulator, DeoR [Bacillus cereus m1293]
 gi|228588534|gb|EEK46571.1| Transcriptional regulator, DeoR [Bacillus cereus m1293]
          Length = 331

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|261419714|ref|YP_003253396.1| IclR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319766532|ref|YP_004132033.1| IclR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376171|gb|ACX78914.1| transcriptional regulator, IclR family [Geobacillus sp. Y412MC61]
 gi|317111398|gb|ADU93890.1| transcriptional regulator, IclR family [Geobacillus sp. Y412MC52]
          Length = 253

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L   ++ ++    I+ I+E   IS+    ++LQ L   G V+
Sbjct: 16 ALRLLQLFSM-DETELSITDISERLNISKSAAHRLLQTLKSEGFVK 60


>gi|198276634|ref|ZP_03209165.1| hypothetical protein BACPLE_02830 [Bacteroides plebeius DSM 17135]
 gi|198270159|gb|EDY94429.1| hypothetical protein BACPLE_02830 [Bacteroides plebeius DSM 17135]
          Length = 631

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           A+  + P  + +I +   + E  L K++  LV   I+    G
Sbjct: 586 ALLKENPLSLQEIKDKMQVPENHLMKVVSYLVSEEIIRQENG 627


>gi|206978379|ref|ZP_03239251.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|222094402|ref|YP_002528461.1| transcriptional regulator, deor family [Bacillus cereus Q1]
 gi|206743413|gb|EDZ54848.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|221238459|gb|ACM11169.1| Transcriptional regulator, DeoR family [Bacillus cereus Q1]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|218895702|ref|YP_002444113.1| hypothetical protein BCG9842_B4654 [Bacillus cereus G9842]
 gi|228899333|ref|ZP_04063596.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222]
 gi|218542212|gb|ACK94606.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228860364|gb|EEN04761.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|218231818|ref|YP_002365444.1| hypothetical protein BCB4264_A0684 [Bacillus cereus B4264]
 gi|218159775|gb|ACK59767.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|217958234|ref|YP_002336780.1| hypothetical protein BCAH187_A0777 [Bacillus cereus AH187]
 gi|217067346|gb|ACJ81596.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|111224265|ref|YP_715059.1| GntR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151797|emb|CAJ63517.1| Putative transcriptional regulator (GntR-family) [Frankia alni
          ACN14a]
          Length = 228

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++     +S   L + ++ L   GI+   RG  GG+   RP
Sbjct: 30 ELLARFGVSRPSLRQAVRLLQAEGILTVRRGHHGGLYGQRP 70


>gi|42779794|ref|NP_977041.1| hypothetical protein BCE_0716 [Bacillus cereus ATCC 10987]
 gi|42735711|gb|AAS39649.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 348

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 52 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 92


>gi|30018832|ref|NP_830463.1| DeoR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|229126080|ref|ZP_04255102.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4]
 gi|229143375|ref|ZP_04271806.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24]
 gi|29894374|gb|AAP07664.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC
          14579]
 gi|228640182|gb|EEK96581.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24]
 gi|228657402|gb|EEL13218.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|16265038|ref|NP_437830.1| putative transcriptional regulator, gntR family protein
          [Sinorhizobium meliloti 1021]
 gi|307309391|ref|ZP_07589050.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          BL225C]
 gi|15141177|emb|CAC49690.1| putative transcriptional regulator, gntR family protein
          [Sinorhizobium meliloti 1021]
 gi|306900121|gb|EFN30740.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          BL225C]
          Length = 257

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R ++     A+++  P    ++  A  +S + + + ++ L   G ++T  G+ 
Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAAYGVSRITVRQAIKELENLGYLQTRPGKG 81


>gi|163938571|ref|YP_001643455.1| helix-turn-helix type 11 domain-containing protein [Bacillus
          weihenstephanensis KBAB4]
 gi|163860768|gb|ABY41827.1| Helix-turn-helix type 11 domain protein [Bacillus
          weihenstephanensis KBAB4]
          Length = 317

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|47568100|ref|ZP_00238805.1| transcriptional regulator, DeoR family [Bacillus cereus G9241]
 gi|47555254|gb|EAL13600.1| transcriptional regulator, DeoR family [Bacillus cereus G9241]
          Length = 331

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 75


>gi|325662827|ref|ZP_08151396.1| hypothetical protein HMPREF0490_02136 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470879|gb|EGC74108.1| hypothetical protein HMPREF0490_02136 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 327

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +       ++ E   +S   ++K++  L + G  +E VR +  G RL    D
Sbjct: 10 RESSGHVSGQELCERFQVSRTAIWKVISQLKEEGYEIEAVRNK--GYRLQESPD 61


>gi|294787836|ref|ZP_06753080.1| YihY family protein [Simonsiella muelleri ATCC 29453]
 gi|294484129|gb|EFG31812.1| YihY family protein [Simonsiella muelleri ATCC 29453]
          Length = 405

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 11  IRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           IR+L+    +        +  + +   +    L  IL  L K G +++ +       L +
Sbjct: 285 IRILLKLDESRIQSKVLSVEDLRQVVNMDYDSLDNILLQLKKYGFIKSHK----NYWLLK 340

Query: 69  P-ADQITILDVV 79
               +ITIL+++
Sbjct: 341 KLPTEITILELM 352


>gi|290581312|ref|YP_003485704.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|254998211|dbj|BAH88812.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 237

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY     ++++    S   + K LQ L KAG ++TV+GR 
Sbjct: 23 GDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRG 63


>gi|238022761|ref|ZP_04603187.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147]
 gi|237865964|gb|EEP67100.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147]
          Length = 396

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 19/86 (22%)

Query: 52  GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
           G V     R GG  LCR  D+I + D+ +A          F +    C       L  ++
Sbjct: 330 GYVA---RRAGGWVLCRSPDEIGLGDLFRAF--------VFDADNSVCDDE---RLNGLM 375

Query: 112 RKALNAFFDVLTQYSIECLVRNRSSI 137
           R       D L    +  ++R    +
Sbjct: 376 RGV----ADGLDGR-LGDVLRGGKRM 396


>gi|229027588|ref|ZP_04183807.1| hypothetical protein bcere0029_57940 [Bacillus cereus AH1272]
 gi|228733717|gb|EEL84492.1| hypothetical protein bcere0029_57940 [Bacillus cereus AH1272]
          Length = 642

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 15  MYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG--RRG---G 63
           +Y A+               +IAE   +SE  + + ++ L K  IV  V+G  R+G   G
Sbjct: 480 IYLAMQLSEIELEKEAFTKEEIAEIAHVSEKTVQRYIKELTKHSIVVNVKGNSRKGIKKG 539

Query: 64  VRLCR 68
            ++ R
Sbjct: 540 YKINR 544


>gi|192290890|ref|YP_001991495.1| hypothetical protein Rpal_2507 [Rhodopseudomonas palustris TIE-1]
 gi|192284639|gb|ACF01020.1| Helix-turn-helix type 11 domain protein [Rhodopseudomonas
          palustris TIE-1]
          Length = 321

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +         ++AEAC +S   +++ +  L  +G+ V   RG  GG RL
Sbjct: 8  LQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 56


>gi|220915850|ref|YP_002491154.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953704|gb|ACL64088.1| ribonuclease BN [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 439

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 12  RVLMYCAIHNDYPNRISQ---IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           R L+  A   D          +A     +     + L  L +  IV ++    GG+   R
Sbjct: 300 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAALRQRAIVVSL--ADGGLVPAR 357

Query: 69  PADQITILDVVKATEE 84
           P ++IT+LDV +A   
Sbjct: 358 PLEKITLLDVRQAVSG 373


>gi|20093980|ref|NP_613827.1| transcription regulator [Methanopyrus kandleri AV19]
 gi|19886942|gb|AAM01757.1| Predicted transcriptional regulator consisting of a V4R domain
          and a DNA-binding HTH domain [Methanopyrus kandleri
          AV19]
          Length = 245

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +       IS IA    +S+  +   LQ L KAG+V+ ++
Sbjct: 27 LEERGSMTISDIARELNLSKSTVHHHLQELRKAGLVDVIK 66


>gi|39933773|ref|NP_946049.1| GntR family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|192289192|ref|YP_001989797.1| GntR family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|39647620|emb|CAE26140.1| possible transcriptional regulator, GntR family [Rhodopseudomonas
          palustris CGA009]
 gi|192282941|gb|ACE99321.1| transcriptional regulator, GntR family [Rhodopseudomonas
          palustris TIE-1]
          Length = 242

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 15 MYCAIHNDYPNRI------SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AI +            ++IAE   ++   + + L  L + G+V   RG  
Sbjct: 20 IELAIADGRYLPGGKLPGETEIAENYGVNRHTVRRALAALAERGLVRAERGSG 72


>gi|75759356|ref|ZP_00739453.1| Transcriptional regulator, GntR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218896386|ref|YP_002444797.1| transcriptional regulator, GntR family [Bacillus cereus G9842]
 gi|228900035|ref|ZP_04064270.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 4222]
 gi|74493188|gb|EAO56307.1| Transcriptional regulator, GntR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218540702|gb|ACK93096.1| transcriptional regulator, GntR family [Bacillus cereus G9842]
 gi|228859576|gb|EEN04001.1| Transcriptional regulator, GntR [Bacillus thuringiensis IBL 4222]
          Length = 126

 Score = 35.7 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|330910239|gb|EGH38749.1| oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli AA86]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|320449630|ref|YP_004201726.1| acetate operon repressor [Thermus scotoductus SA-01]
 gi|320149799|gb|ADW21177.1| acetate operon repressor [Thermus scotoductus SA-01]
          Length = 234

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          G+ VL   A   +       +AE   +++  L+++LQ LV+ G VE  RG     R+   
Sbjct: 18 GLSVLQALAELKEAGLSP--LAERTGLTKSTLYRLLQTLVRHGFVEEERGV---YRVG-- 70

Query: 70 ADQITILDVV 79
               +  V 
Sbjct: 71 PKAFAVGQVY 80


>gi|312964530|ref|ZP_07778786.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli 2362-75]
 gi|312290764|gb|EFR18641.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli 2362-75]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|331656502|ref|ZP_08357464.1| putative extracellular solute-binding protein [Escherichia coli
          TA206]
 gi|331054750|gb|EGI26759.1| putative extracellular solute-binding protein [Escherichia coli
          TA206]
          Length = 571

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|300787330|ref|YP_003767621.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796844|gb|ADJ47219.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 136

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          I+VL   A   +    ++++ E        L + L  L + G+V + R G      L +P
Sbjct: 28 IQVLEVLAAAGEEGTPVTRLLEVTDCEASHLSQHLAVLRRTGVVTSTRTGNAVEYWLAQP 87


>gi|316932134|ref|YP_004107116.1| GntR family transcriptional regulator [Rhodopseudomonas palustris
          DX-1]
 gi|315599848|gb|ADU42383.1| transcriptional regulator, GntR family [Rhodopseudomonas
          palustris DX-1]
          Length = 242

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 15 MYCAIHNDYPNRI------SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AI +            ++IAE   ++   + + L  L + G+V   RG  
Sbjct: 20 IELAIADGRYLPGGKLPGETEIAENYGVNRHTVRRALAALAERGLVRAERGSG 72


>gi|331645630|ref|ZP_08346733.1| putative extracellular solute-binding protein [Escherichia coli
          M605]
 gi|281177616|dbj|BAI53946.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|331044382|gb|EGI16509.1| putative extracellular solute-binding protein [Escherichia coli
          M605]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|269126827|ref|YP_003300197.1| regulatory protein ArsR [Thermomonospora curvata DSM 43183]
 gi|268311785|gb|ACY98159.1| regulatory protein ArsR [Thermomonospora curvata DSM 43183]
          Length = 328

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R  +  A+  D P   + +AE   +S   +   L  L +AG++   R R G
Sbjct: 262 RAALLVAL--DVPASTATLAERHGLSPSGVSAHLTALHRAGLLT--RRRHG 308


>gi|290960657|ref|YP_003491839.1| regulator [Streptomyces scabiei 87.22]
 gi|260650183|emb|CBG73299.1| putative regulator [Streptomyces scabiei 87.22]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 6   RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-- 63
           R+   +RV +      D       +AE   I E+ + + L+ + + G+++  RGR GG  
Sbjct: 43  RSRIALRVRLRSVRPGDRLPDAGVLAEELGIGEITVRRALEGMCQDGLLDRRRGRAGGTF 102

Query: 64  --------VRLCRPADQITILDVVKAT 82
                   V L    ++   L+  +  
Sbjct: 103 VAQEWDTVVALTHDPEEAASLEAFRLL 129


>gi|251778864|ref|ZP_04821784.1| transcriptional regulator, GntR family [Clostridium botulinum E1
          str. 'BoNT E Beluga']
 gi|243083179|gb|EES49069.1| transcriptional regulator, GntR family [Clostridium botulinum E1
          str. 'BoNT E Beluga']
          Length = 132

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    + +++    I+   + K  + L + GI+ET+RG+ 
Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYRELEREGIIETLRGKG 72


>gi|229102985|ref|ZP_04233674.1| catabolite protein activator [Bacillus cereus Rock3-28]
 gi|228680400|gb|EEL34588.1| catabolite protein activator [Bacillus cereus Rock3-28]
          Length = 233

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             IS IA+   +S   + ++LQ L K  ++E   G 
Sbjct: 178 TSISSIADFIGVSYRHVIRVLQKLNKEKLIEKKNGV 213


>gi|229096877|ref|ZP_04227846.1| catabolite protein activator [Bacillus cereus Rock3-29]
 gi|229115865|ref|ZP_04245263.1| catabolite protein activator [Bacillus cereus Rock1-3]
 gi|228667608|gb|EEL23052.1| catabolite protein activator [Bacillus cereus Rock1-3]
 gi|228686487|gb|EEL40396.1| catabolite protein activator [Bacillus cereus Rock3-29]
          Length = 233

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             IS IA+   +S   + ++LQ L K  ++E   G 
Sbjct: 178 TSISSIADFIGVSYRHVIRVLQKLNKEKLIEKKNGV 213


>gi|222032240|emb|CAP74979.1| Uncharacterized protein ybae [Escherichia coli LF82]
 gi|312945023|gb|ADR25850.1| hypothetical protein NRG857_02105 [Escherichia coli O83:H1 str.
          NRG 857C]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|222153787|ref|YP_002562964.1| MarR family regulatory protein [Streptococcus uberis 0140J]
 gi|222114600|emb|CAR43600.1| MarR family regulatory protein [Streptococcus uberis 0140J]
          Length = 150

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL+Y   H +    +  I  A CIS+     +++ + K G ++
Sbjct: 37 HVLIYLDKHQNQEIYVKDIENALCISKSVASNLVKRMEKNGFID 80


>gi|215485526|ref|YP_002327957.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli O127:H6 str.
          E2348/69]
 gi|215263598|emb|CAS07928.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli O127:H6 str.
          E2348/69]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|116873810|ref|YP_850591.1| hypothetical protein lwe2394 [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742688|emb|CAK21812.1| conserved hypothetical protein [Listeria welshimeri serovar 6b
          str. SLCC5334]
          Length = 298

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          R+L    +  +     S++AE   +S   +++ +  L+ AG  V ++ G+ GG  
Sbjct: 5  RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVSLPGKNGGFM 59


>gi|110640706|ref|YP_668434.1| putative extracellular solute-binding protein [Escherichia coli
          536]
 gi|191173698|ref|ZP_03035222.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli F11]
 gi|110342298|gb|ABG68535.1| putative extracellular solute-binding protein [Escherichia coli
          536]
 gi|190906056|gb|EDV65671.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli F11]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTVLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|318056811|ref|ZP_07975534.1| ArsR family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318076875|ref|ZP_07984207.1| ArsR family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 146

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 40 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 87


>gi|269977817|ref|ZP_06184774.1| putative DNA-binding protein [Mobiluncus mulieris 28-1]
 gi|269933987|gb|EEZ90564.1| putative DNA-binding protein [Mobiluncus mulieris 28-1]
          Length = 495

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           ++L Y A H        ++AE   IS      IL  LVK G+V 
Sbjct: 438 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLVKTGLVT 479


>gi|242238750|ref|YP_002986931.1| phosphonate metabolism transcriptional regulator PhnF [Dickeya
          dadantii Ech703]
 gi|242130807|gb|ACS85109.1| phophonate C-P lyase system transcriptional regulator PhnF, GntR
          family [Dickeya dadantii Ech703]
          Length = 239

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           DY     Q+A    ++   L + +  LV  G+V+  RG  G + L RP
Sbjct: 30 GDYLPSEQQLAARYDVNRHTLRRAVDELVNQGLVQRRRGV-GTLVLMRP 77


>gi|206967866|ref|ZP_03228822.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206736786|gb|EDZ53933.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 317

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYVLDLSDMGLPIYAEQGRNGGYK 61


>gi|163855862|ref|YP_001630160.1| heat-inducible transcription repressor [Bordetella petrii DSM
          12804]
 gi|163259590|emb|CAP41891.1| heat-inducible transcriptional repressor [Bordetella petrii]
          Length = 335

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 20/46 (43%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++ L+   I +  P     +++   +S   +  ++  L   G++ +
Sbjct: 9  LKALIERHIADGQPVGSRTLSKVFDLSPATIRNVMADLEDLGLIHS 54


>gi|22537479|ref|NP_688330.1| MarR family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|22534358|gb|AAN00203.1|AE014253_1 transcriptional regulator, MarR family [Streptococcus agalactiae
          2603V/R]
          Length = 146

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           ++MY   H D    I  + E   IS+     +++ + K G +  V
Sbjct: 37 HLVMYLYKHPDKDMSIKAVEEILHISKSVASNLVKRMEKNGFIAIV 82


>gi|327309781|ref|YP_004336679.1| GntR domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326955116|gb|AEA28812.1| GntR domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 254

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           D      ++ +A  +S   + + L+ L    +VET RG  GG
Sbjct: 48 GDRLPSEPELCKAFGVSRSTIREALRVLASQNLVETRRGATGG 90


>gi|319652299|ref|ZP_08006416.1| hypothetical protein HMPREF1013_03029 [Bacillus sp. 2_A_57_CT2]
 gi|317395960|gb|EFV76681.1| hypothetical protein HMPREF1013_03029 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           N+     +++A+   I  + + K  + L   G + + +GR G     R   QI +     
Sbjct: 23  NEKLPSENELADQYGIPRMVVRKAYEQLQDLGFIFSKQGR-GSYVQNRK-QQIPL----- 75

Query: 81  ATEESFFVAECFASHKIDCPLVGSC 105
                   +E    H  D      C
Sbjct: 76  ILTGDISFSEKMNEHGYDFRSENVC 100


>gi|310826698|ref|YP_003959055.1| hypothetical protein ELI_1104 [Eubacterium limosum KIST612]
 gi|308738432|gb|ADO36092.1| predicted protein [Eubacterium limosum KIST612]
          Length = 500

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
               D    I +I+    IS   + + L  L + G +   RGR
Sbjct: 23 LYREGDSLPTIEKISGQFNISINTVRQSLINLERDGFIRLTRGR 66


>gi|251780643|ref|ZP_04823563.1| transcriptional regulatory protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243084958|gb|EES50848.1| transcriptional regulatory protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 244

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 42 ELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74


>gi|228964416|ref|ZP_04125530.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228795273|gb|EEM42765.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 126

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|226947132|ref|YP_002802205.1| multidrug efflux pump operon transcriptional regulator protein
          [Azotobacter vinelandii DJ]
 gi|226722059|gb|ACO81230.1| multidrug efflux pump operon transcriptional regulator protein
          [Azotobacter vinelandii DJ]
          Length = 261

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     H      ++ IA+A  +    + +I+  L    +VE + G  GG RL 
Sbjct: 26 IMRTLGEHPQG-LSLAAIAQAVKLPRSTVQRIVCALEAEYLVEAM-GPSGGFRLG 78


>gi|188588660|ref|YP_001920884.1| transcriptional regulatory protein [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188498941|gb|ACD52077.1| transcriptional regulatory protein [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   L + L  L   G+++ +RG+ 
Sbjct: 42 ELAKFIGVSRTTLRQALALLQDDGLIKNIRGKG 74


>gi|223935063|ref|ZP_03626982.1| transcriptional regulator, GntR family [bacterium Ellin514]
 gi|223896516|gb|EEF62958.1| transcriptional regulator, GntR family [bacterium Ellin514]
          Length = 240

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +    P     +I E   +S     K L  L K G V  ++G+ 
Sbjct: 26 LAPGNPVPSENEIIEKYQVSNTTARKALHELEKEGWVTRIKGKG 69


>gi|188585365|ref|YP_001916910.1| transcriptional regulator, GntR family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350052|gb|ACB84322.1| transcriptional regulator, GntR family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 138

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 19 IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D     + ++A+   I+   + K  + L   G + +VRGR 
Sbjct: 29 LKPDEKVPSVRELAQTLTINPNTIQKAYKDLETEGFIYSVRGRG 72


>gi|94497022|ref|ZP_01303595.1| transcriptional regulator, ArsR family, ArsR1 [Sphingomonas sp.
          SKA58]
 gi|294010409|ref|YP_003543869.1| ArsR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|94423394|gb|EAT08422.1| transcriptional regulator, ArsR family, ArsR1 [Sphingomonas sp.
          SKA58]
 gi|292673739|dbj|BAI95257.1| ArsR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 139

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    H        ++A+A  + +  +   L  L +AG+V + R
Sbjct: 48 AFRLLV---RHEPEGLPAGEVAKALDVPQNTMSVHLATLARAGLVTSER 93


>gi|70606992|ref|YP_255862.1| transcriptional regulator Lrs14-like protein [Sulfolobus
          acidocaldarius DSM 639]
 gi|68567640|gb|AAY80569.1| transcriptional regulator Lrs14-like protein [Sulfolobus
          acidocaldarius DSM 639]
          Length = 123

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62
          L++  +++D    I ++AE   +S+  + K L  L   G++E    +  GR+G
Sbjct: 32 LIFRLLYSDTKLNIEELAEEFKVSKALISKSLSELANKGLIEREKVSNEGRKG 84


>gi|300935458|ref|ZP_07150453.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300459340|gb|EFK22833.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 372

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           A +N+      QIAE   +S+  + ++   L K G++ T R   
Sbjct: 12 IAEYNNG-LTYKQIAEKYGMSKRNVERLGAKLAKRGLISTRRAPG 55


>gi|228951835|ref|ZP_04113933.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228807758|gb|EEM54279.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 126

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|229016709|ref|ZP_04173641.1| Transcriptional regulator, GntR [Bacillus cereus AH1273]
 gi|229022915|ref|ZP_04179434.1| Transcriptional regulator, GntR [Bacillus cereus AH1272]
 gi|228738356|gb|EEL88833.1| Transcriptional regulator, GntR [Bacillus cereus AH1272]
 gi|228744563|gb|EEL94633.1| Transcriptional regulator, GntR [Bacillus cereus AH1273]
          Length = 126

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|110679644|ref|YP_682651.1| phosphonates metabolism transcriptional regulator PhnF, putative
          [Roseobacter denitrificans OCh 114]
 gi|109455760|gb|ABG31965.1| phosphonates metabolism transcriptional regulator PhnF, putative
          [Roseobacter denitrificans OCh 114]
          Length = 222

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     + +AE   ++   +   +  LV  G+V T RG   G  +        I   V+
Sbjct: 13 GDKLPTEAALAERFGVNRHTVRHGISALVAEGLVRTRRGA--GAFVAATPTDYPIGKRVR 70


>gi|42780546|ref|NP_977793.1| GntR family transcriptional regulator [Bacillus cereus ATCC
          10987]
 gi|42736466|gb|AAS40401.1| transcriptional regulator, GntR family [Bacillus cereus ATCC
          10987]
          Length = 126

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 29 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|72163340|ref|YP_290997.1| GntR family transcriptional regulator [Thermobifida fusca YX]
 gi|71917072|gb|AAZ56974.1| transcriptional regulator, GntR family [Thermobifida fusca YX]
          Length = 259

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           A   + P+  + + E   +S   + K +  L  AG+V T +G+ G     RP 
Sbjct: 30 LAPGEEIPSEAA-LMERYGVSSGTVRKAVAELRTAGLVVTYQGK-GSFVKSRPP 81


>gi|38232748|ref|NP_938515.1| hypothetical protein DIP0119 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199006|emb|CAE48623.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 579

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
           + +  P   ++IAE+  +    + +IL+ L +AG
Sbjct: 525 LSSGSPISAAEIAESIGMPRPEITEILRNLRRAG 558


>gi|148257904|ref|YP_001242489.1| hypothetical protein BBta_6686 [Bradyrhizobium sp. BTAi1]
 gi|146410077|gb|ABQ38583.1| hypothetical protein BBta_6686 [Bradyrhizobium sp. BTAi1]
          Length = 327

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +          +AEAC +S   +++ +  L  AGI V   RG  GG RL
Sbjct: 13 LQAKGQVTAPALAEACEVSVRTIYRDIDALAAAGIPVYAERGAEGGFRL 61


>gi|117926787|ref|YP_867404.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1]
 gi|117610543|gb|ABK45998.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1]
          Length = 369

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRR 61
           L+   +  +++L Y   H      I  IA    ++   L K L  LV+ G +V    GR 
Sbjct: 306 LSALPEISVQILEYAREHG--RVTIGDIATLTGVNRNTLKKHLSQLVEKGHLVLHGSGRG 363

Query: 62  GGVRLC 67
               L 
Sbjct: 364 AWYALA 369


>gi|308067307|ref|YP_003868912.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856586|gb|ADM68374.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 317

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
           LM   + +       ++AE   +S   + + L  L + G+ + T  G  GG R
Sbjct: 7  ALMRI-LDSRKKYTARELAERFGVSVRTIQRDLDYLQQTGLPLYTEMGPHGGYR 59


>gi|283833305|ref|ZP_06353046.1| regulatory protein [Citrobacter youngae ATCC 29220]
 gi|291070943|gb|EFE09052.1| regulatory protein [Citrobacter youngae ATCC 29220]
          Length = 241

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +A+   +S + + + L  L    ++ TVRGR GG
Sbjct: 43 TDLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 78


>gi|254519950|ref|ZP_05132006.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913699|gb|EEH98900.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 252

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--ADQITIL 76
          +  D   R+  ++E   +SE  + K L  L + G    ++   GG  L R    +  T  
Sbjct: 12 LKRDGKVRVKDLSEKFNVSEGMIRKDLSKLEQHG---NIKRTYGGAILERKIIHNDNTTS 68

Query: 77 DVVKATEESFFVAECFASH 95
           ++   EE   +A      
Sbjct: 69 RIISNIEEKEKIARLVMDE 87


>gi|261419861|ref|YP_003253543.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319766676|ref|YP_004132177.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376318|gb|ACX79061.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61]
 gi|317111542|gb|ADU94034.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52]
          Length = 125

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 21/49 (42%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++      +D    +  +A+   I+   + K  + L + G + ++ G+ 
Sbjct: 24 IVRELWQPHDQLPSVRTMAKQLMINPNTIQKAYRELERDGWIYSIPGKG 72


>gi|163746398|ref|ZP_02153756.1| transcriptional regulator, GntR family, putative [Oceanibulbus
          indolifex HEL-45]
 gi|161380283|gb|EDQ04694.1| transcriptional regulator, GntR family, putative [Oceanibulbus
          indolifex HEL-45]
          Length = 257

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +      +++AE   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DQRLPSEAELAEQFEVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|118468406|ref|YP_888758.1| ArsR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169693|gb|ABK70589.1| transcriptional regulator, ArsR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 114

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +       + ++ +A  + +  + + L+ L +AG+V + R GR    RL   
Sbjct: 38  LRIAIVLQLQQSQRC-VHELVDALDVPQPLVSQHLRILKQAGVVSSERAGREVLYRLVDH 96

Query: 69  PADQITILDVVKATEE 84
               I +  +  A+E+
Sbjct: 97  HLAHIVVDAIAHASED 112


>gi|145595458|ref|YP_001159755.1| hypothetical protein Strop_2939 [Salinispora tropica CNB-440]
 gi|145304795|gb|ABP55377.1| transcriptional regulator [Salinispora tropica CNB-440]
          Length = 238

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          ++      D    I++I+    +        L  LV AG++   R   G
Sbjct: 32 ILELTRAADGGLTIAEISARTGLHPSTARSHLDRLVNAGLLVKARSSGG 80


>gi|91779399|ref|YP_554607.1| IclR family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91692059|gb|ABE35257.1| transcriptional regulator, IclR family [Burkholderia xenovorans
          LB400]
          Length = 250

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           L+   +++D P  ++ IA+   + +  L ++L  L   G+V    G++    +     Q
Sbjct: 13 ALLEHLVNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQ 72

Query: 73 ITIL 76
          + + 
Sbjct: 73 LALG 76


>gi|327189567|gb|EGE56720.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 279

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69
          R + +   H D    + QI+EA  +S   L ++       G+V   ++ G   G RL R 
Sbjct: 6  RAIWFIESHFDSDLSLEQISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59

Query: 70 -----ADQITILDV 78
                   TIL+V
Sbjct: 60 VPALVGSSATILEV 73


>gi|323705081|ref|ZP_08116657.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535507|gb|EGB25282.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 953

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 23/80 (28%)

Query: 34  CCISELFLFKILQPLVKAGIVETVRG------------------RRGGVRLCRPADQITI 75
              S     KI++ L K G +  + G                   +GG  + R A  IT+
Sbjct: 688 YRTSPHHKLKIVRALRKKGYIVAMTGDGINDAPAVKEANIGIAMGKGGTDVTRNASDITL 747

Query: 76  LD-----VVKATEESFFVAE 90
            D     +V A +E   + E
Sbjct: 748 ADDNFTTIVMAIKEGRGINE 767


>gi|323693744|ref|ZP_08107941.1| hypothetical protein HMPREF9475_02804 [Clostridium symbiosum
          WAL-14673]
 gi|323502195|gb|EGB18060.1| hypothetical protein HMPREF9475_02804 [Clostridium symbiosum
          WAL-14673]
          Length = 326

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69
          +R+L       +      +I E   +S   ++K+++ L   G ++E VR +  G RL   
Sbjct: 6  LRML----KEAEGYISGQEICEKFNVSRTAVWKVIKQLETEGYLIEAVRNK--GYRLKMA 59

Query: 70 ADQITILDV 78
           D ++  ++
Sbjct: 60 GDILSRAEI 68


>gi|323484888|ref|ZP_08090243.1| hypothetical protein HMPREF9474_01994 [Clostridium symbiosum
          WAL-14163]
 gi|323401769|gb|EGA94112.1| hypothetical protein HMPREF9474_01994 [Clostridium symbiosum
          WAL-14163]
          Length = 326

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69
          +R+L       +      +I E   +S   ++K+++ L   G ++E VR +  G RL   
Sbjct: 6  LRML----KEAEGYISGQEICEKFNVSRTAVWKVIKQLETEGYLIEAVRNK--GYRLKMA 59

Query: 70 ADQITILDV 78
           D ++  ++
Sbjct: 60 GDILSRAEI 68


>gi|295096758|emb|CBK85848.1| transcriptional regulator, GntR family [Enterobacter cloacae
          subsp. cloacae NCTC 9394]
          Length = 473

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A++   P    ++A A  +S   +   L  L + G +E+  G  
Sbjct: 34 ALRLLILDGRLALNT-RPPGERELAAALSVSRTTISSALAHLREEGYLESRHGSG 87


>gi|282899504|ref|ZP_06307469.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
 gi|281195611|gb|EFA70543.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
          Length = 718

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+H +    + +IA    +    + +I + L K GI +          L     + T+ D
Sbjct: 562 AVHPESYPLVEKIAGDLQVPLNQVTQIAERLKKTGIKK---------YLTDAIGEPTLRD 612

Query: 78  VVKATEES 85
           +++  E+ 
Sbjct: 613 ILRELEKP 620


>gi|251800075|ref|YP_003014806.1| hypothetical protein Pjdr2_6117 [Paenibacillus sp. JDR-2]
 gi|247547701|gb|ACT04720.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2]
          Length = 314

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R++ +   ++     ++ ++A+   +S+  + + LQ L + G+ + +  G  GG ++ R 
Sbjct: 6  RLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLQELSELGVPLYSEVGPHGGYQVLRE 65


>gi|114761179|ref|ZP_01441094.1| transcriptional regulator, ArsR familyy protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545427|gb|EAU48429.1| transcriptional regulator, ArsR familyy protein [Roseovarius sp.
           HTCC2601]
          Length = 112

 Score = 35.7 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+               +I     I    L   L  L +AG+V + R            
Sbjct: 19  LRIFRLLVQRGPGGTPAMEIGRLLDIKPSTLSGHLAALKRAGLVSSER----------QH 68

Query: 71  DQITILDVVKATEE--SFFVAECFASHKIDCPLVG 103
            +I     + A      F + +C    +  C  +G
Sbjct: 69  REIQYAPRLDAVNGLVRFLLEDCCGGDEGACSGIG 103


>gi|326800139|ref|YP_004317958.1| regulatory protein GntR HTH [Sphingobacterium sp. 21]
 gi|326550903|gb|ADZ79288.1| regulatory protein GntR HTH [Sphingobacterium sp. 21]
          Length = 239

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +IA +  +S   + + L  L   G++ET + R  G+ L  P       D++ + E+    
Sbjct: 51  EIAASLGVSRNIVREALSRLKALGLIETKKKR--GMVLAEP-------DILGSFEKVLDP 101


>gi|319949883|ref|ZP_08023890.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea
          P4]
 gi|319436454|gb|EFV91567.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea
          P4]
          Length = 95

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T  G+  L +          +S +AEA  I+     + L+ L + G V   R
Sbjct: 17 TRLGL--LAHMHHAGPGVATVSDLAEAVGITRNAASQALRILREQGWVSATR 66


>gi|312199288|ref|YP_004019349.1| GntR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230624|gb|ADP83479.1| GntR domain protein [Frankia sp. EuI1c]
          Length = 274

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69
           R+L   A          Q+ E   +S   + + L+ L   G+V   RG  GG  + RP  
Sbjct: 25  RILSSTAGDAYRLPTQEQLVEEFGVSYPSVREALRILETEGLVTVRRGNVGGGEVHRPDS 84

Query: 70  ------------ADQITILDV---VKATEESFFVAECFASHK 96
                       A+++T+ D+   ++  E     AEC     
Sbjct: 85  ASSAYHLGLVLQAERVTLGDLAGGLRLFE-PLCAAECARRPD 125


>gi|239934204|ref|ZP_04691157.1| GntR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291442648|ref|ZP_06582038.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291345543|gb|EFE72499.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 130

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L ++  + +R  +      D    +  +A+   ++   + K  + L   G+V    G  
Sbjct: 17 QLVQQVRHALR--LGLLKEGDRLPTVKDVAKQMAVNPNTVLKAYRELEHDGLVAARPGVG 74


>gi|239928934|ref|ZP_04685887.1| GntR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291437263|ref|ZP_06576653.1| gntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291340158|gb|EFE67114.1| gntR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 246

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 21 NDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  P    + +A+   ++   + + L  L  +G+VE + GR       R  
Sbjct: 28 SGQPLPSEEALAKQFGVTRPTVRQGLSELRASGLVEAIMGRG---TFARSP 75


>gi|238922019|ref|YP_002935533.1| ArsR family transcriptional regulator [Eubacterium eligens ATCC
          27750]
 gi|238873691|gb|ACR73399.1| ArsR family transcriptional regulator [Eubacterium eligens ATCC
          27750]
          Length = 89

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            + N+      +IAE   IS+  L K L  L +A +V + +
Sbjct: 19 LKLLNEKDLSAGEIAEHFDISKPALTKHLNILREAELVSSEK 60


>gi|254481030|ref|ZP_05094276.1| biotin-(acetyl-CoA-carboxylase) ligase [marine gamma
          proteobacterium HTCC2148]
 gi|214038825|gb|EEB79486.1| biotin-(acetyl-CoA-carboxylase) ligase [marine gamma
          proteobacterium HTCC2148]
          Length = 313

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
              ++A+   +S   ++K L  L + G+ +E+V+G+  G R+      IT+LD
Sbjct: 3  VSGQELADLLGVSRTAVWKQLNKLEELGLEIESVKGK--GYRI---PGGITLLD 51


>gi|169833824|ref|YP_001693500.1| phage replication protein [Streptococcus pneumoniae Hungary19A-6]
 gi|168996326|gb|ACA36938.1| phage replication protein [Streptococcus pneumoniae Hungary19A-6]
 gi|321156973|emb|CBW38962.1| Phage protein [Streptococcus phage V22]
          Length = 113

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG 62
          +++  A H ++     +IA+   ++   + K  +   +AG +  +R    G  G
Sbjct: 1  MMVVLANHPNWQVYPDEIAKRKGVNRKTIDKYFKIFEEAGYLRKIRKKPPGNGG 54


>gi|150396345|ref|YP_001326812.1| ROK family protein [Sinorhizobium medicae WSM419]
 gi|150027860|gb|ABR59977.1| ROK family protein [Sinorhizobium medicae WSM419]
          Length = 371

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRP 69
          +R+L      ++ PN  + +A    +S   L  +   L+  G +VE   G  GG  L RP
Sbjct: 9  LRIL-----RDEGPNSRAILARRSKLSATTLTHVTAQLLADGSVVEEEPGASGG--LGRP 61

Query: 70 ADQITIL 76
          A  I +L
Sbjct: 62 ALAIRLL 68


>gi|107100456|ref|ZP_01364374.1| hypothetical protein PaerPA_01001481 [Pseudomonas aeruginosa
          PACS2]
 gi|254245288|ref|ZP_04938610.1| hypothetical protein PA2G_06180 [Pseudomonas aeruginosa 2192]
 gi|126198666|gb|EAZ62729.1| hypothetical protein PA2G_06180 [Pseudomonas aeruginosa 2192]
          Length = 266

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|254239372|ref|ZP_04932695.1| hypothetical protein PACG_05569 [Pseudomonas aeruginosa C3719]
 gi|126171303|gb|EAZ56814.1| hypothetical protein PACG_05569 [Pseudomonas aeruginosa C3719]
          Length = 266

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|119717990|ref|YP_924955.1| regulatory proteins, IclR [Nocardioides sp. JS614]
 gi|119538651|gb|ABL83268.1| regulatory protein, IclR [Nocardioides sp. JS614]
          Length = 252

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 28/133 (21%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +  L+     +  P     +A    +     + +L+ LV  G             L R 
Sbjct: 14  ALH-LLDAVGSSTRPMTAKALARQARMPLPTTYHLLRTLVHEGY------------LARD 60

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--AFFDVLT--QY 125
            +   + D  +A            +         +  +   LR  LN  A+  VL   + 
Sbjct: 61  PEGYVLGD--RAI---------TLAGAPTLRPTHTHRILEHLRDELNAPAYLSVLDDGEI 109

Query: 126 SIECLVRNRSSIK 138
            +  +  +R+S +
Sbjct: 110 RLADVADSRTSPR 122


>gi|290960548|ref|YP_003491730.1| IclR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260650074|emb|CBG73190.1| putative IclR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 263

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 26 LAARGDRPARLQELADELGVPRSSMYALLQTLIGRGWVRT 65


>gi|171057801|ref|YP_001790150.1| GntR domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170775246|gb|ACB33385.1| GntR domain protein [Leptothrix cholodnii SP-6]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----G-----GVRLC 67
            A  +  P   + +AE   +S   + + +  L  AG+VET  G      G     G R+ 
Sbjct: 32  LAQGDKLPTEAAIMAE-FAVSRTVVREAISKLQAAGLVETRHGIGTFVLGVGEAPGFRIA 90

Query: 68  RPADQI-TILDVVKATE 83
              +Q  T+ DV+   E
Sbjct: 91  --PEQYNTLRDVIAVLE 105


>gi|220912501|ref|YP_002487810.1| GntR family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219859379|gb|ACL39721.1| transcriptional regulator, GntR family [Arthrobacter
          chlorophenolicus A6]
          Length = 288

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 12 RVLMYCAIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R ++  A+         + +     +S   + + L  L   G++   RGR 
Sbjct: 37 RQIVDLALPPGSSLPTEEELQRQFGVSRSVVRQSLAGLSDLGLIRRQRGRG 87


>gi|168233010|ref|ZP_02658068.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237694|ref|ZP_02662752.1| putative regulatory protein, GntR family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|194469484|ref|ZP_03075468.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736476|ref|YP_002116991.1| putative regulatory protein GntR family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|194455848|gb|EDX44687.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711978|gb|ACF91199.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197289428|gb|EDY28793.1| putative regulatory protein, GntR family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|205332827|gb|EDZ19591.1| putative regulatory protein, GntR family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
          Length = 240

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++A A  +S + + +    L+ AGI+ + RG  
Sbjct: 38 KEVARAYNVSLIVVKQAWSELINAGIISSQRGSG 71


>gi|162149592|ref|YP_001604053.1| ArsR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209544823|ref|YP_002277052.1| ArsR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161788169|emb|CAP57774.1| putative transcriptional regulator ArsR [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532500|gb|ACI52437.1| transcriptional regulator, ArsR family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 142

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LM  ++     + + +I     I +  L + L  L ++G+V T R  R
Sbjct: 27 LMILSLLLAGEHTVGEIETRTGIGQPALSQQLAELRRSGLVTTRRAAR 74


>gi|117165128|emb|CAJ88682.1| putative marR-family regulatory protein [Streptomyces ambofaciens
          ATCC 23877]
          Length = 157

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          G+R ++   +H   P  + ++A A  IS  F+ +++       +VE+V
Sbjct: 47 GVRAVLAL-LHRGGPMTVPRMARAQAISRQFVQRMVNEAAAQDLVESV 93


>gi|15613686|ref|NP_241989.1| hypothetical protein BH1123 [Bacillus halodurans C-125]
 gi|10173739|dbj|BAB04842.1| BH1123 [Bacillus halodurans C-125]
          Length = 526

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           V++Y   H      +  IA+   IS  +L +I + 
Sbjct: 429 VMIYIEKHLAENITLQDIADELYISRNYLGQIFKK 463


>gi|323490538|ref|ZP_08095744.1| AraC family transcriptional regulator [Planococcus donghaensis
           MPA1U2]
 gi|323395804|gb|EGA88644.1| AraC family transcriptional regulator [Planococcus donghaensis
           MPA1U2]
          Length = 261

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           +V++Y     +    + +IA+   IS   L +I +    AGI
Sbjct: 150 KVVIYINDEVERDLSVEEIAKHFNISTSHLSRIFRE--HAGI 189


>gi|307321366|ref|ZP_07600765.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          AK83]
 gi|306893011|gb|EFN23798.1| transcriptional regulator, GntR family [Sinorhizobium meliloti
          AK83]
          Length = 257

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R ++     A+++  P    ++  A  +S + + + ++ L   G ++T  G+ 
Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAAYGVSRITVRQAIKELENLGYLQTRPGKG 81


>gi|300784632|ref|YP_003764923.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299794146|gb|ADJ44521.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 262

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +    P     ++A+   +S L +   +  LV+ G++  VRG+ 
Sbjct: 36 LPPGAPIPSERELAQRYGVSRLTVRSAIGKLVEEGLLARVRGKG 79


>gi|298247895|ref|ZP_06971700.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM
           44963]
 gi|297550554|gb|EFH84420.1| transcriptional regulator, ArsR family [Ktedonobacter racemifer DSM
           44963]
          Length = 147

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPA 70
            D P  + +I E   + +  + K L+ L +AGIVE      R      +L R  
Sbjct: 52  RDGPLTVGEITERLGLQQPQVSKHLKVLSEAGIVEVQPQANRRI---YKLRREP 102


>gi|297157038|gb|ADI06750.1| transcriptional regulator, ArsR family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 235

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          +RVL    +    P   S++ E    S+  +   L  L KAG++ T R GR+   RL
Sbjct: 26 LRVLALTHVSQHGPCPFSELVEVTGQSQAQVSNHLAVLRKAGLLVTERQGRQSLYRL 82


>gi|296159032|ref|ZP_06841859.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1]
 gi|295890593|gb|EFG70384.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1]
          Length = 230

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 2  HLTKRTDYG---IRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +  RTDY     RVL+      +I         +IAE   +S   + +  + L K G+V
Sbjct: 7  KIQARTDYVDEVYRVLLDAISEGSIAPGTRIVQEEIAEQLAVSRSPVLQAFRLLKKDGLV 66

Query: 55 ETVRGRR 61
          E   GR 
Sbjct: 67 EDAPGRG 73


>gi|320009443|gb|ADW04293.1| transcriptional regulator, GntR family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 309

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           +      ++A    +S   + + L  L K  ++ T +G   G  +    D+
Sbjct: 34 GERLATQEELASRFGVSRATVSQALAILRKEELIVTRQGS--GSYVASEPDE 83


>gi|254492253|ref|ZP_05105427.1| Ribonuclease BN-like family [Methylophaga thiooxidans DMS010]
 gi|224462578|gb|EEF78853.1| Ribonuclease BN-like family [Methylophaga thiooxydans DMS010]
          Length = 449

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 17/129 (13%)

Query: 10  GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           G+ ++   A    +N  P  I Q+ E   ++   +  +L  L   G++  + G       
Sbjct: 328 GLWLMTVIAKRFCNNQPPLTIQQLEEQTGLTNNAVQDLLSNLESGGLLVELAGDETAYVP 387

Query: 67  CRPADQITILDVVKAT----EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
            +    I +  ++       E S FV +                + ++L+   +A   VL
Sbjct: 388 AQDIASIRVAAIMHCLRTAEENSHFVVKSLVDED----------VNALLQNISDAQAKVL 437

Query: 123 TQYSIECLV 131
              ++  L 
Sbjct: 438 GGMTLRDLA 446


>gi|218893025|ref|YP_002441894.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|218773253|emb|CAW29065.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 266

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|118592788|ref|ZP_01550177.1| probable transcriptional regulatory protein [Stappia aggregata IAM
           12614]
 gi|118434558|gb|EAV41210.1| probable transcriptional regulatory protein [Stappia aggregata IAM
           12614]
          Length = 267

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 12/84 (14%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +++  +  +R+L      ++    + QIA+   +    + +I+  L+   +V       G
Sbjct: 32  ISRAAEI-LRIL----KKDNSGLSLGQIADRVHLPRSTVQRIVNALIAERLVMASA-AEG 85

Query: 63  GVRLC------RPADQITILDVVK 80
           G+RL         A +I + ++V+
Sbjct: 86  GLRLGSEIQSLAAAGRINMAELVR 109


>gi|49082854|gb|AAT50827.1| PA1015 [synthetic construct]
          Length = 267

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|15596212|ref|NP_249706.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116054438|ref|YP_792256.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|9946926|gb|AAG04404.1|AE004534_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115589659|gb|ABJ15674.1| probable transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 266

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|309810472|ref|ZP_07704293.1| transcriptional regulator, ArsR family [Dermacoccus sp. Ellin185]
 gi|308435567|gb|EFP59378.1| transcriptional regulator, ArsR family [Dermacoccus sp. Ellin185]
          Length = 315

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R+L +       P R + IA A  IS       L  L K G+V T R
Sbjct: 255 RILDHL----RVPARTTDIASALDISPATASHHLHILNKTGLVITQR 297


>gi|297559689|ref|YP_003678663.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296844137|gb|ADH66157.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 265

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L+           +SQ+A++  +    + +I++ LV  G V  +  RR    L      I
Sbjct: 31 LLEIMAEAGGETSLSQLADSSGLPLPTIHRIIRTLVGNGYVRQLPSRR--YALG--PRLI 86

Query: 74 TILD 77
           + D
Sbjct: 87 GLGD 90


>gi|296390627|ref|ZP_06880102.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 266

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 21 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 63


>gi|296188009|ref|ZP_06856401.1| HTH domain protein [Clostridium carboxidivorans P7]
 gi|296047135|gb|EFG86577.1| HTH domain protein [Clostridium carboxidivorans P7]
          Length = 320

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++       QI+E   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LNSGAKITAKQISERLEINIRSVYRYMDALCASGVPIISEPGHNGGYSL 62


>gi|227487476|ref|ZP_03917792.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227092700|gb|EEI28012.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 197

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   +  +  P  + ++ E   +S+  +   L+ L + G+++ VR
Sbjct: 126 LRLLSQLSAESCGPVSVGELTETSGLSQPTVSHHLKRLTETGLLDKVR 173


>gi|239827981|ref|YP_002950605.1| GntR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808274|gb|ACS25339.1| transcriptional regulator, GntR family [Geobacillus sp. WCH70]
          Length = 125

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +    L + GIVET RG+ 
Sbjct: 31 GDKLPSVREMAVETGVNPNTIQRTYSELERMGIVETRRGQG 71


>gi|83593052|ref|YP_426804.1| ArsR family transcriptional regulator [Rhodospirillum rubrum ATCC
          11170]
 gi|83575966|gb|ABC22517.1| transcriptional regulator, ArsR family [Rhodospirillum rubrum
          ATCC 11170]
          Length = 122

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+++ CA+       +  + E   I +  L + L  L  AG+VET R
Sbjct: 44 LRLMLVCALVEGE-YGVGALEERLGIGQPALSQHLGVLRAAGLVETRR 90


>gi|329924778|ref|ZP_08279767.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
 gi|328940443|gb|EGG36766.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
          Length = 300

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78
            I  +A+   IS   + K ++ L  AGI+ T  V G+ G         +I+IL V
Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKVPGKSG-------QQKISILKV 81


>gi|323246658|gb|EGA30632.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
          Length = 409

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|320120438|gb|EFE27604.2| transcriptional regulator, DeoR family [Filifactor alocis ATCC
          35896]
          Length = 314

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y           S++A+   +S   +++ +  L  +GI +  ++G+ GG+ +   
Sbjct: 22 FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSLSSSGIPIYALKGKGGGIEIAED 79


>gi|313105958|ref|ZP_07792220.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878722|gb|EFQ37316.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 271

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           I++L + A H D P  ++ IA A  IS    F IL+ L    +
Sbjct: 26 AIQILRHLA-HADGPQGVAAIARATGISPSSAFNILRTLSNERL 68


>gi|297530328|ref|YP_003671603.1| IclR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297253580|gb|ADI27026.1| transcriptional regulator, IclR family [Geobacillus sp. C56-T3]
          Length = 253

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+L   ++ ++    I+ I+E   IS+    ++LQ L   G V+
Sbjct: 16 ALRLLQLFSM-DETELSITDISERLNISKSAAHRLLQTLKSEGFVK 60


>gi|213622594|ref|ZP_03375377.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 542

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|261405963|ref|YP_003242204.1| ArsR family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261282426|gb|ACX64397.1| transcriptional regulator, ArsR family [Paenibacillus sp.
          Y412MC10]
          Length = 300

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78
            I  +A+   IS   + K ++ L  AGI+ T  V G+ G         +I+IL V
Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKVPGKSG-------QQKISILKV 81


>gi|145593619|ref|YP_001157916.1| helix-turn-helix, type 11 domain-containing protein [Salinispora
          tropica CNB-440]
 gi|145302956|gb|ABP53538.1| Helix-turn-helix, type 11 domain protein [Salinispora tropica
          CNB-440]
          Length = 320

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
            +++A    +S   +   +  L   G  V    G  GG RL      P 
Sbjct: 22 TSAELAGRLEVSTRTVRADIARLRSLGYPVHARPGVAGGYRLVAGTAMPP 71


>gi|29828599|ref|NP_823233.1| hypothetical protein SAV_2057 [Streptomyces avermitilis MA-4680]
 gi|29605703|dbj|BAC69768.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 109

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVR------LCRPA 70
          AI  D   RI  IA  C ++E  + KI+  L + G +  T +GR    R      L  PA
Sbjct: 23 AIAEDPTVRIRDIAAHCRLTERAVQKIISDLEQGGYLTHTRQGRSNTYRIQPGTFLRHPA 82

Query: 71 DQ-ITILDVVKAT 82
          D   T+ D++   
Sbjct: 83 DNGSTVADLLSLL 95


>gi|307699716|ref|ZP_07636772.1| transcriptional regulator, ArsR family [Mobiluncus mulieris
          FB024-16]
 gi|307615078|gb|EFN94291.1| transcriptional regulator, ArsR family [Mobiluncus mulieris
          FB024-16]
          Length = 304

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++ P   +++A+A  +S+  L + L  L  AG+++
Sbjct: 29 SNGPQTATELAKALYLSKAVLSRHLSMLRHAGLIK 63


>gi|256397734|ref|YP_003119298.1| hypothetical protein Caci_8641 [Catenulispora acidiphila DSM
          44928]
 gi|256363960|gb|ACU77457.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 320

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++AE   ++   +   ++ L + G  VE   G  GG RL 
Sbjct: 25 ELAERLGVTTRTVRNDVERLRELGYPVEARPGVAGGYRLG 64


>gi|284030168|ref|YP_003380099.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283809461|gb|ADB31300.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 333

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              ++AE   +S   + + ++ L  AG+ V T RGR GG  L
Sbjct: 19 LSARELAERLEVSTRTVMRDMEALSAAGVPVYTERGRNGGCVL 61


>gi|154500855|ref|ZP_02038893.1| hypothetical protein BACCAP_04540 [Bacteroides capillosus ATCC
          29799]
 gi|150270355|gb|EDM97681.1| hypothetical protein BACCAP_04540 [Bacteroides capillosus ATCC
          29799]
          Length = 302

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
                ++AE   +S   + + ++ L +AGI + T +G  GG+
Sbjct: 17 EKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGI 59


>gi|160901785|ref|YP_001567366.1| regulatory protein GntR HTH [Petrotoga mobilis SJ95]
 gi|160359429|gb|ABX31043.1| regulatory protein GntR HTH [Petrotoga mobilis SJ95]
          Length = 353

 Score = 35.7 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            D     +++AE   +S   + K +  L K G + T RG  
Sbjct: 24 KGDRILSENKLAEFFSVSRQTVRKAIYDLEKEGYLVTRRGSG 65


>gi|289643533|ref|ZP_06475650.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506659|gb|EFD27641.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca
           glomerata]
          Length = 255

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +RVL++       P R S +A    +++  +   LQ L + G+VE  R
Sbjct: 86  LRVLVHLHAGPPPPARTSALARELDVADPTVSDALQALRRKGLVERER 133


>gi|291296819|ref|YP_003508217.1| biotin/acetyl-CoA-carboxylase ligase [Meiothermus ruber DSM 1279]
 gi|290471778|gb|ADD29197.1| biotin/acetyl-CoA-carboxylase ligase [Meiothermus ruber DSM 1279]
          Length = 307

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +       +A A  +S   ++K +  L KAG  VET +GR  G RL 
Sbjct: 10 ERFQSGEALASALGVSRTAVWKQVVELRKAGYPVETQKGR--GYRLA 54


>gi|262200873|ref|YP_003272081.1| hypothetical protein Gbro_0875 [Gordonia bronchialis DSM 43247]
 gi|262084220|gb|ACY20188.1| Helix-turn-helix type 11 domain protein [Gordonia bronchialis DSM
          43247]
          Length = 328

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + VLM    H+      +Q+A+   +SE  + + +  L  +GI V   RGR GG  L
Sbjct: 7  LAVLMLLKTHS--RMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFAL 61


>gi|227825019|ref|ZP_03989851.1| transcriptional regulator [Acidaminococcus sp. D21]
 gi|226905518|gb|EEH91436.1| transcriptional regulator [Acidaminococcus sp. D21]
          Length = 261

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-- 67
            +R+L   A        ++ I+ A  + +  +++IL+ L  AG +E    + G  RL   
Sbjct: 25  AVRILELYAAQRRESLSLTGISRALSLHKTTVYRILRTLQHAGWIEQSE-KSGQYRLGTG 83

Query: 68  --RPADQITILDVVK--ATEESFFVAECFAS 94
               A  +++ + VK   TE    +++CF  
Sbjct: 84  ILMVASAVSVHNTVKDLITEALNDLSDCFNE 114


>gi|254424859|ref|ZP_05038577.1| phosphonates metabolism transcriptional regulator PhnF
          [Synechococcus sp. PCC 7335]
 gi|196192348|gb|EDX87312.1| phosphonates metabolism transcriptional regulator PhnF
          [Synechococcus sp. PCC 7335]
          Length = 251

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D     SQ+++   ++   + + +  L + G++ + RG  
Sbjct: 28 GDRLPPESQLSQQFSVNRNTIRQAISLLKQEGLLRSQRGSG 68


>gi|91772790|ref|YP_565482.1| iron dependent repressor [Methanococcoides burtonii DSM 6242]
 gi|91711805|gb|ABE51732.1| iron dependent repressor [Methanococcoides burtonii DSM 6242]
          Length = 163

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 14/125 (11%)

Query: 4   TKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           T+RT DY +++L    I      R+  ++E   ++   +  + + L + G +     + G
Sbjct: 3   TERTEDY-LKILDSI-IKKKGYARVKDVSEIMGLNPSSVTGMFKKLNREGYINYE--KYG 58

Query: 63  GVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGL-TSVLRKALNAF 118
            V L    ++I      +ATEE + V + F              +C +   +  + L+ F
Sbjct: 59  AVTLTPKGEEIA-----RATEEKYDVLQEFLQILGVDTKTADEDACRIEHGLTHETLDVF 113

Query: 119 FDVLT 123
              + 
Sbjct: 114 TKFIE 118


>gi|324998376|ref|ZP_08119488.1| LysR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 305

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL---VKAGIVETVRGRR---- 61
          Y +R+L       D    +  +AE   +S   + + L  L    ++G++E   GRR    
Sbjct: 5  YRLRMLTLL----DGLGTVRAVAETMHVSPSTVSQQLGVLESETRSGLLE-RTGRRVRLT 59

Query: 62 -GGVRLCRPADQI 73
            G+ L R   +I
Sbjct: 60 PAGLVLARRGREI 72


>gi|302528943|ref|ZP_07281285.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437838|gb|EFL09654.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 185

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 17 CAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVR 58
           A+  D P  I+Q+AE   I   S  +    ++ L +AGIV  VR
Sbjct: 41 LAVLRDGPATITQVAEQLGIAKGSSSY---HMRVLERAGIVHVVR 82


>gi|229095300|ref|ZP_04226292.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29]
 gi|228688159|gb|EEL42045.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29]
          Length = 324

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 32 TAQEIADEFNISVRTVHRYILDLGDMGLPIYAEQGRNGGYK 72


>gi|229114249|ref|ZP_04243670.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3]
 gi|228669269|gb|EEL24690.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3]
          Length = 313

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYILDLGDMGLPIYAEQGRNGGYK 61


>gi|192292440|ref|YP_001993045.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192286189|gb|ACF02570.1| transcriptional regulator, ArsR family [Rhodopseudomonas
          palustris TIE-1]
          Length = 118

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 3  LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + R+L+              +A+A  +    +   L  L +AG+V + R
Sbjct: 13 LSQETRLAVFRLLV---RREPDGVAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66


>gi|167032893|ref|YP_001668124.1| GntR domain-containing protein [Pseudomonas putida GB-1]
 gi|166859381|gb|ABY97788.1| GntR domain protein [Pseudomonas putida GB-1]
          Length = 234

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI------------TI 75
            ++AE   IS   L + +  L   G+V ++ G+     L   AD I            ++
Sbjct: 34  RELAEQLGISRPSLREAVTVLETLGLVRSMPGKG---VLVLDADAISHEAGVDTSAAASL 90

Query: 76  LDVVKA---TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
            DV++     E   F+    A       +         +R+AL A
Sbjct: 91  ADVLELRYTLEP--FIVGLVAQSANSQDIGQLRLTLMDMREALEA 133


>gi|313897202|ref|ZP_07830746.1| transcriptional regulator, GntR family [Clostridium sp. HGF2]
 gi|312957923|gb|EFR39547.1| transcriptional regulator, GntR family [Clostridium sp. HGF2]
          Length = 488

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A    +S   + K L  L + G V T+ G+ 
Sbjct: 283 KQLAAIYNVSVSTIRKALTELSQRGFVRTINGKG 316


>gi|296331873|ref|ZP_06874338.1| transcriptional regulator (GntR family) protein [Bacillus
          subtilis subsp. spizizenii ATCC 6633]
 gi|305673485|ref|YP_003865157.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296150951|gb|EFG91835.1| transcriptional regulator (GntR family) protein [Bacillus
          subtilis subsp. spizizenii ATCC 6633]
 gi|305411729|gb|ADM36848.1| transcriptional regulator (GntR family) protein [Bacillus
          subtilis subsp. spizizenii str. W23]
          Length = 238

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++      S   + K L  L + G ++ +RG+ G V L R 
Sbjct: 33 ELTAQYDTSRETVRKALHMLAQNGYIQKIRGK-GSVVLNRE 72


>gi|237731341|ref|ZP_04561822.1| GntR-family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226906880|gb|EEH92798.1| GntR-family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 241

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +A+   +S + + + L  L    ++ TVRGR GG
Sbjct: 43 TDLAKMMGVSHITIREALNTLRANNLIHTVRGRNGG 78


>gi|167568407|ref|ZP_02361281.1| transcriptional regulator [Burkholderia oklahomensis C6786]
          Length = 523

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           R L+Y   H   P  + Q+A+   +S   L  + +
Sbjct: 423 RALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 457


>gi|167561189|ref|ZP_02354105.1| transcriptional regulator [Burkholderia oklahomensis EO147]
          Length = 523

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           R L+Y   H   P  + Q+A+   +S   L  + +
Sbjct: 423 RALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 457


>gi|126735825|ref|ZP_01751570.1| transcriptional regulator, GntR family, putative [Roseobacter sp.
          CCS2]
 gi|126715012|gb|EBA11878.1| transcriptional regulator, GntR family, putative [Roseobacter sp.
          CCS2]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELADQFEVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|45358762|ref|NP_988319.1| phosphate transporter PhoU [Methanococcus maripaludis S2]
 gi|45047628|emb|CAF30755.1| phosphate transport system regulatory protein-related
          [Methanococcus maripaludis S2]
          Length = 284

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          ++ P     IA+   +S  ++ K+L+PLV  G
Sbjct: 18 DEEPETQDDIADRLGVSRRYVAKLLKPLVDGG 49


>gi|322372343|ref|ZP_08046879.1| transcriptional regulator, MarR family [Streptococcus sp. C150]
 gi|321277385|gb|EFX54454.1| transcriptional regulator, MarR family [Streptococcus sp. C150]
          Length = 147

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + Y + + D    I  I +  CIS+     +++ + K G VE
Sbjct: 40 AVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGFVE 82


>gi|253577280|ref|ZP_04854598.1| DRTGG domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251843284|gb|EES71314.1| DRTGG domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 444

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI----TILD 77
               + ++A+A  +SE   ++ ++     GIV T   R G VR+ +    I    T  D
Sbjct: 24 GTKISVRKLAKALGVSEGTAYRAVKEAENLGIVITKE-RIGTVRVEKKPRNISDQLTFGD 82

Query: 78 VVKATEE 84
          VV+  E 
Sbjct: 83 VVEIVEG 89


>gi|228477912|ref|ZP_04062526.1| transcriptional regulator [Streptococcus salivarius SK126]
 gi|228250402|gb|EEK09642.1| transcriptional regulator [Streptococcus salivarius SK126]
          Length = 147

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + Y + + D    I  I +  CIS+     +++ + K G VE
Sbjct: 40 AVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGFVE 82


>gi|221198437|ref|ZP_03571483.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2M]
 gi|221208886|ref|ZP_03581883.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2]
 gi|221171169|gb|EEE03619.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2]
 gi|221182369|gb|EEE14770.1| transcriptional regulator, IclR family [Burkholderia multivorans
           CGD2M]
          Length = 314

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 64  MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 120

Query: 71  DQITILDVVKA 81
            +  + ++VKA
Sbjct: 121 LE--LGNLVKA 129


>gi|159905857|ref|YP_001549519.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C6]
 gi|159887350|gb|ABX02287.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C6]
          Length = 284

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          ++ P     IA+   +S  ++ K+L+PLV  G
Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49


>gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281500|gb|ABR89910.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 221

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 16  YCAIHNDYPNRISQIAE-----ACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLC 67
           Y A     P    ++AE     +  +    +  ++  + +   A ++ET RG   G  L 
Sbjct: 160 YLAHQAGRPVSAGELAEHLYGDSEGVDTNAIEALVLRMRRKFGADLIETRRGF--GYMLS 217


>gi|150402372|ref|YP_001329666.1| phosphate uptake regulator PhoU [Methanococcus maripaludis C7]
 gi|150033402|gb|ABR65515.1| phosphate uptake regulator, PhoU [Methanococcus maripaludis C7]
          Length = 284

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          ++ P     IA+   +S  ++ K+L+PLV  G
Sbjct: 18 DEEPETQDDIADRLNVSRRYVAKLLKPLVDGG 49


>gi|325003042|ref|ZP_08124154.1| MarR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 161

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL +   H   P R ++IA A       + + +  LVKAG+VE
Sbjct: 52 HVLAHL--HFGGPQRATEIAAAFHSDPSTISRQVSALVKAGLVE 93


>gi|300172534|ref|YP_003771699.1| biotin operon repressor/biotin--[acetyl-CoA-carboxylase]
          synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886912|emb|CBL90880.1| Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase]
          synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 326

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR----- 65
          R+L + A H         +A+   IS   ++K+++ L + G  +++      G R     
Sbjct: 6  RILHFFAEHEGEYLSGETLAKNLDISRAAVWKVIKKLTEQGHTIDSQ--HHVGYRYQSGK 63

Query: 66 ---------LCRPADQITILDVVKAT 82
                   L     QI + DV+ +T
Sbjct: 64 VLSVPMIRQLAHSDWQIKLFDVIDST 89


>gi|294617131|ref|ZP_06696791.1| RepE protein [Enterococcus faecium E1679]
 gi|291596608|gb|EFF27841.1| RepE protein [Enterococcus faecium E1679]
          Length = 497

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67
           +   ++ E   I E  L K+L+ L            GR GG+ L 
Sbjct: 393 STKKELREELKIPERSLDKVLKQLKNENKIYYRVRSGRNGGITLA 437


>gi|220912622|ref|YP_002487931.1| hypothetical protein Achl_1867 [Arthrobacter chlorophenolicus A6]
 gi|219859500|gb|ACL39842.1| Helix-turn-helix type 11 domain protein [Arthrobacter
          chlorophenolicus A6]
          Length = 232

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          +  L    + +        ++A    +S   + + L  L  +G  V +  G  GG  L 
Sbjct: 7  LHALSEMLLRSGKRGVSAERLAGEFEVSVRTIKRDLDALENSGAPVWSRPGPGGGYGLA 65


>gi|196044224|ref|ZP_03111460.1| HTH domain family [Bacillus cereus 03BB108]
 gi|196024863|gb|EDX63534.1| HTH domain family [Bacillus cereus 03BB108]
          Length = 317

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     RIS++AE   + E  +      +  AGI +ET +GR GG  L 
Sbjct: 10 MIEL-LHARGKMRISELAELLEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63


>gi|116250905|ref|YP_766743.1| HTH family transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115255553|emb|CAK06630.1| putative HTH family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 115

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +     + + ++ E   + +  L + L  L  +GIVET R
Sbjct: 39 RLMIVCTLVEGE-HSVGELEEKIDVHQPHLSQHLTVLRGSGIVETRR 84


>gi|73537549|ref|YP_297916.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120886|gb|AAZ63072.1| transcriptional regulator, GntR family [Ralstonia eutropha
          JMP134]
          Length = 247

 Score = 35.7 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           D     S++     +S   + + L  L  +G+VET  G  G   L RPA+ 
Sbjct: 41 GDKLPTESEVMATFGVSRTVVREALSRLQASGLVETRHGI-GTFVLARPAET 91


>gi|331266805|ref|YP_004326435.1| transcriptional repressor CodY [Streptococcus oralis Uo5]
 gi|326683477|emb|CBZ01095.1| transcriptional repressor CodY [Streptococcus oralis Uo5]
          Length = 262

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|325478232|gb|EGC81351.1| putative HTH-type transcriptional repressor CzrA [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 100

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVK 80
           D    + QIA +  +S+  +   L+ L ++ +V++ R G+     L     +I I   ++
Sbjct: 37  DGEVSVGQIATSLDMSQSAISHQLKYLKESNLVKSKRNGKSMLYYLADDHVKIIIKTGLE 96

Query: 81  ATEE 84
             EE
Sbjct: 97  HIEE 100


>gi|315612764|ref|ZP_07887675.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis ATCC 49296]
 gi|322374709|ref|ZP_08049223.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. C300]
 gi|315314874|gb|EFU62915.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis ATCC 49296]
 gi|321280209|gb|EFX57248.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. C300]
          Length = 262

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|92118294|ref|YP_578023.1| hypothetical protein Nham_2789 [Nitrobacter hamburgensis X14]
 gi|91801188|gb|ABE63563.1| hypothetical protein Nham_2789 [Nitrobacter hamburgensis X14]
          Length = 157

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVK---AGIVETVRGRRGGVRLCRPADQITI 75
            H      IS +A A  +S    +K    L     AG+V   RG +GG ++   AD +  
Sbjct: 53  RHQIDRLPISDVASAFGVSRPTFYKAQSALADHGLAGLVPRQRGPKGGHKI--SADVLAY 110

Query: 76  LDVVKATEESFFVAECFA 93
           +D ++AT     V +C  
Sbjct: 111 IDQLRATRPGLTVPQCVD 128


>gi|145223674|ref|YP_001134352.1| transcriptional regulator, TrmB [Mycobacterium gilvum PYR-GCK]
 gi|145216160|gb|ABP45564.1| transcriptional regulator, IclR family [Mycobacterium gilvum
          PYR-GCK]
          Length = 267

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62
          +  D  ++VL   A H        +IA    + +  + +++  L   G VE  + RG+  
Sbjct: 20 QSVDRALQVLEIVAAHGQAGVT--EIAAELGVHKSTVSRLVAVLEARGYVEQVSERGK-- 75

Query: 63 GVRLC 67
            RL 
Sbjct: 76 -YRLG 79


>gi|329957871|ref|ZP_08298346.1| hypothetical protein HMPREF9445_03230 [Bacteroides clarus YIT
          12056]
 gi|328522748|gb|EGF49857.1| hypothetical protein HMPREF9445_03230 [Bacteroides clarus YIT
          12056]
          Length = 123

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LT +T   I +L   A  ++  + + ++      S   + ++L+ L    I+  + G+  
Sbjct: 2  LTIQTQVAITILHSIATSHES-HSLGRL-----FSTNIVSELLEQLEMGKIIRLIPGKEK 55

Query: 63 G----VRLCRPADQITILDVVKATEESFFVA 89
          G      L RP+  I++LD+++AT E     
Sbjct: 56 GKITSYELTRPSVNISLLDILEATGEHLNCT 86


>gi|298249630|ref|ZP_06973434.1| transcriptional regulator, MarR family with acetyltransferase
           activity [Ktedonobacter racemifer DSM 44963]
 gi|297547634|gb|EFH81501.1| transcriptional regulator, MarR family with acetyltransferase
           activity [Ktedonobacter racemifer DSM 44963]
          Length = 308

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 9   YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRR 61
           Y +   RV+   A    +    S +     +   +L ++L  L + G++E VR    GR+
Sbjct: 35  YSLTESRVIFDLA--QGHALTASDLCRELGLDAGYLSRLLNRLEQQGLLEKVRSESDGRQ 92

Query: 62  GGVRLCRPADQI-TILD 77
             +RL     Q  ++LD
Sbjct: 93  RLLRLTAEGKQAFSVLD 109


>gi|271968708|ref|YP_003342904.1| glc operon transcriptional activator [Streptosporangium roseum DSM
           43021]
 gi|270511883|gb|ACZ90161.1| glc operon transcriptional activator [Streptosporangium roseum DSM
           43021]
          Length = 247

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           T R    + V +      +      +IA A  + E+   + L  L + G++E  RGR GG
Sbjct: 26  TVRARIAMAVDLGLLQPGERLPPTGEIARALDVGEMTARRALVALCEEGMLERRRGRTGG 85

Query: 64  VRLC-RPA----DQI-----TILDVVKATEESFFVAECFASH 95
             +  RPA     +I        DV +  ++   + EC  +H
Sbjct: 86  TLVAPRPAGGRVREIAAYQAAAGDVHRLIDQRL-LLECGTAH 126


>gi|254386170|ref|ZP_05001482.1| deoR-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194345027|gb|EDX25993.1| deoR-family transcriptional regulator [Streptomyces sp. Mg1]
          Length = 326

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL----CRPA 70
          S++A    +S   + + +  L + G  VE   G  GG RL      P 
Sbjct: 24 SELAARLRVSARTIRRDIDRLRELGYPVEATLGADGGYRLVAGAAMPP 71


>gi|126650777|ref|ZP_01722993.1| transcriptional regulator, MarR family protein [Bacillus sp.
          B14905]
 gi|126592442|gb|EAZ86460.1| transcriptional regulator, MarR family protein [Bacillus sp.
          B14905]
          Length = 139

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          + +  P+    IA    I +  + K++  LV+ G VET+ G+
Sbjct: 42 LKDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMAGK 83


>gi|159041368|ref|YP_001540620.1| hypothetical protein Cmaq_0795 [Caldivirga maquilingensis IC-167]
 gi|157920203|gb|ABW01630.1| hypothetical protein Cmaq_0795 [Caldivirga maquilingensis IC-167]
          Length = 297

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGGVRLCRPADQIT 74
           I+       + I E   +S+  +   L  L   GI+E +    RGRR   +L      IT
Sbjct: 34  INGKEYVTFNDIVENTGLSQRAVRGALSELKAKGIIEVILDVSRGRRYLYKLI--PSNIT 91

Query: 75  ILDVVKATEESFFVAE 90
           I++  +  E   ++ +
Sbjct: 92  IVE--EQVESGLYLVD 105


>gi|108800412|ref|YP_640609.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119869541|ref|YP_939493.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436035|ref|YP_001071726.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108770831|gb|ABG09553.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS]
 gi|119695630|gb|ABL92703.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS]
 gi|126235835|gb|ABN99235.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS]
          Length = 120

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          +R+ +   + +     + ++ +A  + +  + + L+ L +AG+V + R GR    RL
Sbjct: 44 VRIAIVLHLQHSARC-VHELVDALGVPQPLVSQHLRILKQAGVVASERSGREVLYRL 99


>gi|55377094|ref|YP_134944.1| transcription regulator [Haloarcula marismortui ATCC 43049]
 gi|55229819|gb|AAV45238.1| transcription regulator [Haloarcula marismortui ATCC 43049]
          Length = 356

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 9  YGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          YG+       Y A+    P     +AE   +S+ +++ I   L   G V
Sbjct: 19 YGLSETEAETYLAVVEKGPATARTVAETAGVSKSYVYDICDSLAVDGFV 67


>gi|152966315|ref|YP_001362099.1| MarR family transcriptional regulator [Kineococcus radiotolerans
           SRS30216]
 gi|151360832|gb|ABS03835.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
           SRS30216]
          Length = 191

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + L+    H+  P  I  +A+   ++   + + +  +  AG+  +  G
Sbjct: 61  KALIRL--HHRGPLSIKALAQQVGVTHSAMSQTVTAMRHAGLTNSTAG 106


>gi|315444000|ref|YP_004076879.1| IclR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315262303|gb|ADT99044.1| transcriptional regulator, IclR family [Mycobacterium sp. Spyr1]
          Length = 267

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRG 62
          +  D  ++VL   A H        +IA    + +  + +++  L   G VE  + RG+  
Sbjct: 20 QSVDRALQVLEIVAAHGQAGVT--EIAAELGVHKSTVSRLVAVLEARGYVEQVSERGK-- 75

Query: 63 GVRLC 67
            RL 
Sbjct: 76 -YRLG 79


>gi|311029714|ref|ZP_07707804.1| trehalose operon repressor [Bacillus sp. m3-13]
          Length = 235

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + E    S   + K L  L + G ++ VRG+ G + L R 
Sbjct: 33 DLMELFDTSRETVRKALNQLAQNGYIQKVRGK-GSIVLARD 72


>gi|307326889|ref|ZP_07606080.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887425|gb|EFN18420.1| GntR domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 236

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          G+R         D      ++A+   IS   + + +  L   G+VE  +G  GG+ L R 
Sbjct: 30 GLRA-------GDRLPTERELAQRLGISRASVKQAIVVLEVQGLVEVRQG--GGMCLLRD 80


>gi|304313816|ref|YP_003848963.1| transcriptional regulator [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587275|gb|ADL57650.1| predicted transcriptional regulator [Methanothermobacter
          marburgensis str. Marburg]
          Length = 248

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 7  TDY---GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          TDY       ++            S +AEA  I    ++++L+ L   G VE  RG+
Sbjct: 15 TDYQAAAYTAMVSLVSAG-----ASDVAEASGIPRSRIYEVLRQLSDRGFVEVERGK 66


>gi|300118620|ref|ZP_07056358.1| hypothetical protein BCSJ1_14990 [Bacillus cereus SJ1]
 gi|298724009|gb|EFI64713.1| hypothetical protein BCSJ1_14990 [Bacillus cereus SJ1]
          Length = 314

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     RIS++AE   + E  +      +  AGI +ET +GR GG  L 
Sbjct: 10 MIEL-LHARGKMRISELAEILEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63


>gi|323528383|ref|YP_004230535.1| regulatory protein ArsR [Burkholderia sp. CCGE1001]
 gi|323385385|gb|ADX57475.1| regulatory protein ArsR [Burkholderia sp. CCGE1001]
          Length = 111

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R ++     ++    +  I E   +S+  + K L+ L +AG VE+ 
Sbjct: 14 RAILSLLASSER--SVGDIEEQLNLSQPSVSKHLRVLREAGFVESR 57


>gi|320012718|gb|ADW07568.1| transcriptional regulator, ArsR family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 131

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 47 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 94


>gi|256958863|ref|ZP_05563034.1| DRTGG domain-containing protein [Enterococcus faecalis DS5]
 gi|256949359|gb|EEU65991.1| DRTGG domain-containing protein [Enterococcus faecalis DS5]
          Length = 439

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 26/129 (20%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
                +  IA++  +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18  GDRISVRSIAKSLSVSEGTAYRTIKDAENIGLVPTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK------ALNAFFDVLTQYSIECLV 131
           VV+  E                 L GS GL  VL K         A    +T  S+  +V
Sbjct: 77  VVRIIEGDV--------------LGGSSGLDKVLNKFVIGAMTETAMTRYITPGSL-MIV 121

Query: 132 RNRSSIKKI 140
            NR  ++K+
Sbjct: 122 GNRQGVQKL 130


>gi|163744158|ref|ZP_02151518.1| transcriptional regulator, GntR family protein [Oceanibulbus
          indolifex HEL-45]
 gi|161380976|gb|EDQ05385.1| transcriptional regulator, GntR family protein [Oceanibulbus
          indolifex HEL-45]
          Length = 237

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
             D     +Q+A    ++   + + +  + + G+  + RG   GV + +      I   
Sbjct: 24 APGDRLPTEAQLAARFGVNRHTVRRAISNMNEGGLTYSRRGA--GVFVAQRPTDYAIGKR 81

Query: 79 VK 80
          V+
Sbjct: 82 VR 83


>gi|315645508|ref|ZP_07898632.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
 gi|315278986|gb|EFU42296.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
          Length = 261

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +     I VL+     N       ++AE   +S   +++ +  L +AGI +   +G
Sbjct: 1  MKIDRL--LAITVLLL----NRGRLSAKELAERFEVSSKTIYRDMDTLCRAGIPIAAHQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 ISGGF 59


>gi|312904720|ref|ZP_07763870.1| primase 1 [Enterococcus faecalis TX0635]
 gi|310631943|gb|EFQ15226.1| primase 1 [Enterococcus faecalis TX0635]
          Length = 439

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 362 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 414


>gi|307270915|ref|ZP_07552201.1| primase 1 [Enterococcus faecalis TX4248]
 gi|307273541|ref|ZP_07554782.1| primase 1 [Enterococcus faecalis TX0855]
 gi|312952158|ref|ZP_07771038.1| primase 1 [Enterococcus faecalis TX0102]
 gi|314949853|ref|ZP_07853162.1| primase 1 [Enterococcus faecium TX0082]
 gi|306509781|gb|EFM78810.1| primase 1 [Enterococcus faecalis TX0855]
 gi|306512742|gb|EFM81388.1| primase 1 [Enterococcus faecalis TX4248]
 gi|310629878|gb|EFQ13161.1| primase 1 [Enterococcus faecalis TX0102]
 gi|313643797|gb|EFS08377.1| primase 1 [Enterococcus faecium TX0082]
 gi|315575425|gb|EFU87616.1| primase 1 [Enterococcus faecalis TX0309B]
 gi|315578521|gb|EFU90712.1| primase 1 [Enterococcus faecalis TX0630]
 gi|315581769|gb|EFU93960.1| primase 1 [Enterococcus faecalis TX0309A]
          Length = 474

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 362 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 414


>gi|260596822|ref|YP_003209393.1| hypothetical protein CTU_10300 [Cronobacter turicensis z3032]
 gi|260215999|emb|CBA28664.1| Uncharacterized protein ybaE [Cronobacter turicensis z3032]
          Length = 564

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            I+++A  C  SE  +  +L  L + G +    ++ RG+RG
Sbjct: 12 VTIAELAARCFCSERHVRTLLGQLQQQGWLRWRAQSGRGKRG 53


>gi|257080240|ref|ZP_05574601.1| plasmid replication protein [Enterococcus faecalis JH1]
 gi|256988270|gb|EEU75572.1| plasmid replication protein [Enterococcus faecalis JH1]
          Length = 324

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 212 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 264


>gi|255976324|ref|ZP_05426910.1| replication protein [Enterococcus faecalis T2]
 gi|255969196|gb|EET99818.1| replication protein [Enterococcus faecalis T2]
          Length = 496

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 384 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 436


>gi|255525724|ref|ZP_05392655.1| Helix-turn-helix type 11 domain protein [Clostridium
          carboxidivorans P7]
 gi|255510547|gb|EET86856.1| Helix-turn-helix type 11 domain protein [Clostridium
          carboxidivorans P7]
          Length = 314

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++       QI+E   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 8  LNSGAKITAKQISERLEINIRSVYRYMDALCASGVPIISEPGHNGGYSL 56


>gi|239816444|ref|YP_002945354.1| GntR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239803021|gb|ACS20088.1| transcriptional regulator, GntR family [Variovorax paradoxus
          S110]
          Length = 234

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A+          IA+   +S   + + L+ L K G V    GR 
Sbjct: 30 ALAPGERITQEDIAQRLSVSRQPVLQALRLLKKDGFVHDAPGRG 73


>gi|241206401|ref|YP_002977497.1| AraC family transcriptional regulator [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240860291|gb|ACS57958.1| transcriptional regulator, AraC family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 279

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69
          R + +   H +    + +I+EA  +S   L ++       G+V   ++ G   G RL R 
Sbjct: 6  RAIWFIESHFESDISLEEISEAAGLSRYHLSRVF------GLVTGYSISGYIRGRRLSRA 59


>gi|190410504|ref|YP_001966128.1| RepR [Enterococcus faecium]
 gi|78522974|gb|ABB46227.1| RepR [Enterococcus faecium]
          Length = 497

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 385 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 437


>gi|116253919|ref|YP_769757.1| AraC family transcriptional regulator [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115258567|emb|CAK09671.1| putative AraC family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 279

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69
          R + +   H +    + +I+EA  +S   L ++       G+V   ++ G   G RL R 
Sbjct: 6  RAIWFIESHFESDISLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59


>gi|110668876|ref|YP_658687.1| transcriptional regulator [Haloquadratum walsbyi DSM 16790]
 gi|109626623|emb|CAJ53089.1| transcriptional regulator (probable sugar-specific)
          [Haloquadratum walsbyi DSM 16790]
          Length = 285

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          LT+  +  ++ L+         +    ++EA  I +  ++ +L  L   G ++ + GR  
Sbjct: 16 LTEYEEQALQSLIEL-----GRSTAPSLSEATGIPKARVYGVLDDLSDEGFIKIIPGRPK 70

Query: 63 GVRLCRPADQITILDVVKATE 83
               +P  +  +LD  +A E
Sbjct: 71 EYE-TKPPAE--LLD--QAIE 86


>gi|69245260|ref|ZP_00603338.1| similar to plasmid replication protein [Enterococcus faecium DO]
 gi|115534803|ref|YP_783885.1| putative Rep protein [Enterococcus faecalis]
 gi|121633851|ref|YP_976089.1| replication protein [Enterococcus faecium]
 gi|124112017|ref|YP_001019046.1| putative replication protein [Enterococcus faecium]
 gi|190606521|ref|YP_001974806.1| putative replication protein [Enterococcus faecium]
 gi|197103137|ref|YP_002128419.1| putative replication protein [Enterococcus faecium]
 gi|257088773|ref|ZP_05583134.1| replication protein repS [Enterococcus faecalis CH188]
 gi|258616892|ref|ZP_05714662.1| putative replication protein [Enterococcus faecium DO]
 gi|261206739|ref|ZP_05921432.1| replication protein [Enterococcus faecium TC 6]
 gi|289567285|ref|ZP_06447665.1| repR protein [Enterococcus faecium D344SRF]
 gi|293559716|ref|ZP_06676241.1| RepR [Enterococcus faecium E1162]
 gi|294623212|ref|ZP_06702088.1| RepR [Enterococcus faecium U0317]
 gi|12956986|emb|CAC29157.1| putative Rep protein [Enterococcus faecalis]
 gi|68195935|gb|EAN10369.1| similar to plasmid replication protein [Enterococcus faecium DO]
 gi|121490910|emb|CAL36546.1| replication protein [Enterococcus faecium]
 gi|124012119|emb|CAL90952.1| putative replication protein [Enterococcus faecium]
 gi|190350291|emb|CAP62642.1| putative replication protein [Enterococcus faecium]
 gi|196158959|emb|CAP70035.1| putative replication protein [Enterococcus faecium]
 gi|256997585|gb|EEU84105.1| replication protein repS [Enterococcus faecalis CH188]
 gi|260079040|gb|EEW66738.1| replication protein [Enterococcus faecium TC 6]
 gi|281336166|gb|ADA62715.1| similar to plasmid replication protein [Enterococcus faecium]
 gi|289160924|gb|EFD08844.1| repR protein [Enterococcus faecium D344SRF]
 gi|291597379|gb|EFF28554.1| RepR [Enterococcus faecium U0317]
 gi|291606325|gb|EFF35734.1| RepR [Enterococcus faecium E1162]
          Length = 497

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLC 67
            A          ++A    + +  L KIL  L +   V  +  RGR GG+ + 
Sbjct: 385 LASEPYLNLSKKELASQLTMPKRTLDKILNELREENKVFYKVTRGRNGGMIIA 437


>gi|325571506|ref|ZP_08147006.1| transcription regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325155982|gb|EGC68178.1| transcription regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 238

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 19 IHNDYPNRISQIA--EACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ND     +++A  E    S   + + +Q L + G+V +V+GR 
Sbjct: 20 LYNDTMVLPTEMALIERFGTSRNTVRRAIQLLNEDGLVYSVKGRG 64


>gi|296242237|ref|YP_003649724.1| hypothetical protein Tagg_0497 [Thermosphaera aggregans DSM
          11486]
 gi|296094821|gb|ADG90772.1| hypothetical protein Tagg_0497 [Thermosphaera aggregans DSM
          11486]
          Length = 243

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCR 68
          +L Y  ++    + I  I+++  +S L + KIL  L     VE    + G G  L  
Sbjct: 11 ILEYLNMYPG--SGIKDISDSTGLSPLIVRKILYKLKNDNYVE----KSGNGYVLTE 61


>gi|271963352|ref|YP_003337548.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum
          DSM 43021]
 gi|270506527|gb|ACZ84805.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum
          DSM 43021]
          Length = 334

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 3  LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++         + CA H  D P  + ++A  C      L ++L+ L   G+V T     
Sbjct: 15 VSRFAALATMAELGCADHLKDGPLSVEELAVRCGADPAALGRVLRQLAAMGMVATA--AA 72

Query: 62 GGVRLCRPADQITILDV 78
          G   L      +   DV
Sbjct: 73 GTYELTEAGATLR-GDV 88


>gi|225574904|ref|ZP_03783514.1| hypothetical protein RUMHYD_02982 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037872|gb|EEG48118.1| hypothetical protein RUMHYD_02982 [Blautia hydrogenotrophica DSM
          10507]
          Length = 123

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L + G+V + R
Sbjct: 31 GDRLPSVRDLASEAAVNPNTMQKALSELERNGLVYSQR 68


>gi|213162327|ref|ZP_03348037.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
          Length = 441

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|217966792|ref|YP_002352298.1| DeoR family transcriptional regulator [Dictyoglomus turgidum DSM
          6724]
 gi|217335891|gb|ACK41684.1| transcriptional regulator, DeoR family [Dictyoglomus turgidum DSM
          6724]
          Length = 254

 Score = 35.7 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          R+L            + +IA+   ISE+ + + L  L K G+++ VRG
Sbjct: 10 RILQLI--REKGYLTVQEIAKELSISEITVRRDLNFLEKQGLIKRVRG 55


>gi|306831574|ref|ZP_07464732.1| MarR family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426359|gb|EFM29473.1| MarR family transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 162

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
            +MY   + D    I  I +   IS+     +++ + K G ++ V
Sbjct: 56  AVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQVV 100


>gi|300918172|ref|ZP_07134779.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 115-1]
 gi|300414623|gb|EFJ97933.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 115-1]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            IS++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTISELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|288905491|ref|YP_003430713.1| transcriptional regulator, MarR family [Streptococcus
          gallolyticus UCN34]
 gi|325978480|ref|YP_004288196.1| MarR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|288732217|emb|CBI13782.1| putative transcriptional regulator, MarR family [Streptococcus
          gallolyticus UCN34]
 gi|325178408|emb|CBZ48452.1| MarR family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 146

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +MY   + D    I  I +   IS+     +++ + K G ++ V
Sbjct: 40 AVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGFIQVV 84


>gi|282877816|ref|ZP_06286628.1| ROK family protein [Prevotella buccalis ATCC 35310]
 gi|281300027|gb|EFA92384.1| ROK family protein [Prevotella buccalis ATCC 35310]
          Length = 400

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +L Y  +H+     I +I++   IS     KI+  L+  G V + +G+R
Sbjct: 20 ILKYLMLHDG--CTIPEISKHIGISVPTTTKIITNLMSKGFVVS-KGKR 65


>gi|170767713|ref|ZP_02902166.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia albertii TW07627]
 gi|170123201|gb|EDS92132.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia albertii TW07627]
          Length = 566

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+    AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQDAGWLEWRAQSGRGKRGQLRFLVTPESLRNTMIEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|139437281|ref|ZP_01771441.1| Hypothetical protein COLAER_00420 [Collinsella aerofaciens ATCC
          25986]
 gi|133776928|gb|EBA40748.1| Hypothetical protein COLAER_00420 [Collinsella aerofaciens ATCC
          25986]
          Length = 98

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L       +      ++AE   IS+  L   L  L  AG+V   R
Sbjct: 22 RILELL---REGNCTAGELAEHFDISKPSLSHHLATLKNAGLVTDER 65


>gi|86751164|ref|YP_487660.1| GntR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574192|gb|ABD08749.1| transcriptional regulator, GntR family [Rhodopseudomonas palustris
           HaA2]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+    P   +++A    +S   + + L+ LV +G+VE+      G  + +P        
Sbjct: 52  ALPPGAPLDETELAHRFKVSRTPVREALRQLVTSGLVESR--PHHGAVVAKP-------- 101

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
              + E    + E  A  +  C    +  +T + R+ L A  D L
Sbjct: 102 ---SFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDEL 143


>gi|283834979|ref|ZP_06354720.1| Uxu operon transcriptional regulator [Citrobacter youngae ATCC
           29220]
 gi|291069257|gb|EFE07366.1| Uxu operon transcriptional regulator [Citrobacter youngae ATCC
           29220]
          Length = 257

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +  +      +IAE   ++   + + L  L   G+VE  RG             I +LD 
Sbjct: 28  LPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136
                 +        +    C   G   L    R+ L +        Q + E +V+ R +
Sbjct: 76  ------NADAQTIDGNDVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIVKMRQA 128

Query: 137 IK 138
           ++
Sbjct: 129 LQ 130


>gi|262372355|ref|ZP_06065634.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter junii SH205]
 gi|262312380|gb|EEY93465.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter junii SH205]
          Length = 247

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 1  MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M ++ +    +R+L+        +      Q+ E   +S   L + +Q L+ AGI+++  
Sbjct: 1  MKVSDKVVQRLRLLIEKNNVQVGERLPAERQLCEQLGVSRSSLREAIQQLITAGIIQSKA 60

Query: 59 GRR 61
          G  
Sbjct: 61 GAG 63


>gi|320013185|gb|ADW08033.1| regulatory protein ArsR [Streptomyces flavogriseus ATCC 33331]
          Length = 335

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R  +  A+     +   Q+AE   IS     + +  L  AG+V ++R
Sbjct: 268 RAAVLEALATPAGHNTKQLAERLAISPASASEHVAALRAAGLVTSLR 314


>gi|146340629|ref|YP_001205677.1| AsnC/Lrp family transcriptional regulator [Bradyrhizobium sp.
          ORS278]
 gi|146193435|emb|CAL77451.1| putative transcriptional regulatory protein, AsnC/Lrp family;
          putative leucine-responsive regulatory protein
          [Bradyrhizobium sp. ORS278]
          Length = 161

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L       D   RI+++A+   IS+    + ++ L  +G+++ +R
Sbjct: 13 RILAEL--QADGRIRINELADRVGISQPNCLRRVRALRGSGVIKAIR 57


>gi|39936618|ref|NP_948894.1| ArsR family transcriptional regulator ArsR2 [Rhodopseudomonas
          palustris CGA009]
 gi|39650474|emb|CAE28997.1| transcriptional regulator, ArsR family, ArsR2 [Rhodopseudomonas
          palustris CGA009]
          Length = 118

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 3  LTKRTDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + R+L+              +A+A  +    +   L  L +AG+V + R
Sbjct: 13 LSQETRLAVFRLLV---RREPDGVAAGDLAKAVGVPANTMSVHLGVLSRAGLVTSER 66


>gi|122894068|ref|YP_001004131.1| transcriptional repressor of TraB [Streptomyces ghanaensis]
 gi|3135877|emb|CAA56754.1| traR [Streptomyces ghanaensis]
          Length = 246

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    +  +A    IS+    K +  L   G+VE++ G  
Sbjct: 30 GDRIPSVRDLATEWSISQATAMKAVAALRADGLVESITGVG 70


>gi|25010441|ref|NP_734836.1| hypothetical protein gbs0367 [Streptococcus agalactiae NEM316]
 gi|25010753|ref|NP_735148.1| hypothetical protein gbs0698 [Streptococcus agalactiae NEM316]
 gi|25011064|ref|NP_735459.1| hypothetical protein gbs1010 [Streptococcus agalactiae NEM316]
 gi|23094794|emb|CAD46012.1| Unknown [Streptococcus agalactiae NEM316]
 gi|23095107|emb|CAD46342.1| unknown [Streptococcus agalactiae NEM316]
 gi|23095463|emb|CAD46669.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 497

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 13  VLMYCA--IHNDYP---NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVR 65
           V+ Y      +D P        I E   I E  L K+L+ L            GR GG+R
Sbjct: 376 VMAYLEGYFQSDDPFIQTTKKAIREELNIPERSLDKVLKALKADNKIFFAVKSGRGGGIR 435

Query: 66  LC 67
           L 
Sbjct: 436 LT 437


>gi|152976607|ref|YP_001376124.1| manganese transport transcriptional regulator [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|189028679|sp|A7GSM1|MNTR_BACCN RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|152025359|gb|ABS23129.1| iron dependent repressor [Bacillus cytotoxicus NVH 391-98]
          Length = 142

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYLLIDEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTAKGKKIGER 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|325277396|ref|ZP_08143016.1| GntR domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324097469|gb|EGB95695.1| GntR domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 217

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           IR L+        D       +AE   IS   L + L  L   G+V    G+ 
Sbjct: 3  AIRKLIEAGDYQPGDALPSQRDLAEQLGISRASLREALSSLSALGLVSVQPGKG 56


>gi|300859457|ref|YP_003784440.1| MarR family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686911|gb|ADK29833.1| MarR-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302207137|gb|ADL11479.1| MarR-family transcriptional regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|308277391|gb|ADO27290.1| Putative MarR-family transcriptional regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 176

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + ++   A  N  P RIS IA+A  I        L  L K GIVE +R
Sbjct: 61  LTIMTRLA--NTGPARISHIAQAEGIRMPTASNALHHLEKRGIVERIR 106


>gi|289642042|ref|ZP_06474195.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca
           glomerata]
 gi|289508115|gb|EFD29061.1| transcriptional regulator, MarR family [Frankia symbiont of Datisca
           glomerata]
          Length = 166

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG---RRGGVRLCRP 69
           V+    +H   P  I+++AE+   +   L + +  +  AG V T+ G   R   V L   
Sbjct: 46  VMELLRLHAHGPMTITELAESVGRTHSALSQKVAAMRAAGWVHTITGDDARSKKVTLTDN 105

Query: 70  ADQI 73
           A  I
Sbjct: 106 ARDI 109


>gi|271968960|ref|YP_003343156.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270512135|gb|ACZ90413.1| putative transcriptional regulator, ArsR family [Streptosporangium
           roseum DSM 43021]
          Length = 322

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L+  A   + P   +Q+A    +S   + + L  L  AG+V   R
Sbjct: 256 RALL-LA-ELETPASTTQLARRAGLSAAGVSQHLTALRDAGLVTAHR 300


>gi|291301021|ref|YP_003512299.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290570241|gb|ADD43206.1| transcriptional regulator, ArsR family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 90

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70
          D P  +++IA    +    + + L+ L  AG+V ET RGR+   RL    
Sbjct: 8  DGPQPVTEIAAHFDMRRPSVSEHLKALRDAGLVAETKRGRQRFYRLEPEP 57


>gi|220930003|ref|YP_002506912.1| GntR family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|220000331|gb|ACL76932.1| transcriptional regulator, GntR family [Clostridium
          cellulolyticum H10]
          Length = 126

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +D    + ++A+   I+   + K  + L   GI+ +V+G+ 
Sbjct: 32 DDKILSVRELAQTLTINPNTIQKAYKDLEAEGIIYSVKGKG 72


>gi|187479194|ref|YP_787219.1| heat-inducible transcription repressor [Bordetella avium 197N]
 gi|115423781|emb|CAJ50332.1| heat-inducible transcription repressor [Bordetella avium 197N]
          Length = 334

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 22/46 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++ L+   I +  P     +++   +S   +  ++  L + G++++
Sbjct: 9  LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIQS 54


>gi|331270226|ref|YP_004396718.1| GntR family transcriptional regulator [Clostridium botulinum
          BKT015925]
 gi|329126776|gb|AEB76721.1| transcriptional regulator, GntR family [Clostridium botulinum
          BKT015925]
          Length = 242

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D      ++ E   IS   + + +Q L   G V    G+ 
Sbjct: 30 QEHDRLPSERELCEKYDISRSTVRQTMQELENNGYVYREHGKG 72


>gi|330501281|ref|YP_004378150.1| GntR family transcriptional regulator [Pseudomonas mendocina
          NK-01]
 gi|328915567|gb|AEB56398.1| GntR family transcriptional regulator [Pseudomonas mendocina
          NK-01]
          Length = 234

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 8  DYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +Y ++ +            D       +AE   +S   L + L  L   G+V    G+ 
Sbjct: 11 EYALQAIRRLIEEEGYRPGDALPSQRDLAERLGVSRASLREALSSLSALGLVSVQAGKG 69


>gi|266623860|ref|ZP_06116795.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM
           13479]
 gi|288864330|gb|EFC96628.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM
           13479]
          Length = 284

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            L++ T+Y          H D P  + ++A+    S  +L +I + 
Sbjct: 171 KLSEITEY-------MKNHYDEPLSLEKVADRFGFSPTYLSRIFKR 209


>gi|254818708|ref|ZP_05223709.1| putative arsenical resistance operon repressor [Mycobacterium
          intracellulare ATCC 13950]
          Length = 118

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      + +I+    +S+  +   L+ L  AG+++  R
Sbjct: 38 LRLLSLVASHPGGQACVCEISPTFDVSQPTISHHLKTLRSAGLLDCER 85


>gi|253680992|ref|ZP_04861795.1| transcriptional regulator, GntR family [Clostridium botulinum D
          str. 1873]
 gi|253562841|gb|EES92287.1| transcriptional regulator, GntR family [Clostridium botulinum D
          str. 1873]
          Length = 242

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D      ++ E   IS   + + +Q L   G V    G+ 
Sbjct: 30 QEHDRLPSERELCEKYDISRSTVRQTMQELENNGYVYREHGKG 72


>gi|261350680|ref|ZP_05976097.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861463|gb|EFC93761.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 479

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R++ Y A+         ++A+   +S   +  IL  L K  ++  +     G ++ +   
Sbjct: 294 RIVTYIAMQKSGGTSNVKLAQMLGVSPNTINNILNVLEKTQLLFPITAYGTGSKIIKKPW 353

Query: 72  QI 73
           + 
Sbjct: 354 EY 355


>gi|257413371|ref|ZP_05591625.1| transcriptional regulator, GntR family [Roseburia intestinalis
           L1-82]
 gi|257203749|gb|EEV02034.1| transcriptional regulator, GntR family [Roseburia intestinalis
           L1-82]
          Length = 180

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            D    +  +A    ++   + K    L + G+V + R
Sbjct: 89  GDKLPSVRDLAAEAAVNPNTMQKAFTELERTGLVFSQR 126


>gi|223986158|ref|ZP_03636179.1| hypothetical protein HOLDEFILI_03487 [Holdemania filiformis DSM
          12042]
 gi|223961866|gb|EEF66357.1| hypothetical protein HOLDEFILI_03487 [Holdemania filiformis DSM
          12042]
          Length = 305

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +  +     ++Y  +         ++A+   +S   +++ L  L +AGI +   RG
Sbjct: 1  MQMNRCFE-----IVYLLLER-KKITAQELADRFEVSVRTIYRDLDFLSQAGIPIYARRG 54

Query: 60 RRGGVRL 66
          + GG+ L
Sbjct: 55 KDGGIEL 61


>gi|326692449|ref|ZP_08229454.1| biotin-(acetyl-CoA carboxylase) ligase [Leuconostoc argentinum
          KCTC 3773]
          Length = 312

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          H D       IA    IS   ++K +  L +AG  +E+ RG   G R
Sbjct: 14 HADEWVSGETIATDLQISRAAVWKAINKLTEAGFMIESQRGL--GYR 58


>gi|315646339|ref|ZP_07899459.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
 gi|315278538|gb|EFU41854.1| transcriptional regulator, ArsR family protein [Paenibacillus
          vortex V453]
          Length = 300

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQITILDV 78
            I  +A+   IS   + K ++ L  AGI+ T  + G+ G         +I+IL V
Sbjct: 33 MNIKDLAQELQISSPIVTKHIKKLEDAGIIRTEKIPGKSG-------QQKISILKV 81


>gi|315442559|ref|YP_004075438.1| transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315260862|gb|ADT97603.1| transcriptional regulator [Mycobacterium sp. Spyr1]
          Length = 302

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
           +++L + A        +S++A    +S+     I+  L +AG +  VR       RL   
Sbjct: 18  VQILDFLASRPTERYGVSELARRVGLSKPTCLGIVTSLTEAGYL--VRDPADKTYRLG-- 73

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
              IT+    +A +ES  V+     H     L    G T+ L   ++       + ++  
Sbjct: 74  PSLITLGH--RA-QESMRVSPAARDHLR--RLSARYGATAALSAVVD------DRITLLD 122

Query: 130 LVR 132
           LV 
Sbjct: 123 LVA 125


>gi|306829118|ref|ZP_07462308.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus mitis ATCC 6249]
 gi|304428204|gb|EFM31294.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus mitis ATCC 6249]
          Length = 262

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|314948321|ref|ZP_07851712.1| HTH domain protein [Enterococcus faecium TX0082]
 gi|281336192|gb|ADA62741.1| conserved hypothetical protein [Enterococcus faecium]
 gi|313645238|gb|EFS09818.1| HTH domain protein [Enterococcus faecium TX0082]
          Length = 180

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68
           +L+     +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L     
Sbjct: 10  ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65

Query: 69  -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124
            P    T  +V  A   +     C            +   + S+L+     +   L  
Sbjct: 66  LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122


>gi|195977366|ref|YP_002122610.1| transcriptional regulator MarR family [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|225869747|ref|YP_002745694.1| MarR family regulatory protein [Streptococcus equi subsp. equi
          4047]
 gi|195974071|gb|ACG61597.1| transcriptional regulator MarR family [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|225699151|emb|CAW92367.1| MarR family regulatory protein [Streptococcus equi subsp. equi
          4047]
          Length = 149

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           VL++   H D    +  I +   IS+     +++ + K G +  V
Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIRVV 82


>gi|187934164|ref|YP_001885866.1| YtrA family transcriptional regulator [Clostridium botulinum B
          str. Eklund 17B]
 gi|187722317|gb|ACD23538.1| transcriptional regulator YtrA [Clostridium botulinum B str.
          Eklund 17B]
          Length = 132

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    + +++    I+   + K  + L + GI+ET+RG+ 
Sbjct: 31 EGEKLPSVRELSSILTINPNTISKAYKELEREGIIETLRGKG 72


>gi|154150516|ref|YP_001404134.1| iron dependent repressor [Candidatus Methanoregula boonei 6A8]
 gi|153999068|gb|ABS55491.1| iron dependent repressor [Methanoregula boonei 6A8]
          Length = 142

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 3  LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++++T DY +  ++  ++   Y  R   IAE   I    + +++Q L + G V T R + 
Sbjct: 4  ISRKTEDY-LEAILNISLVKGY-ARTKDIAEELNIQPPSVVEMIQKLSQTGFV-TYR-KY 59

Query: 62 GGVRLCRPADQITILDVVK 80
           GV L     +I   +VVK
Sbjct: 60 EGVTLTDNGRKI--AEVVK 76


>gi|187477034|ref|YP_785058.1| GntR family transcriptional regulator [Bordetella avium 197N]
 gi|115421620|emb|CAJ48130.1| GntR-family transcriptional regulator [Bordetella avium 197N]
          Length = 244

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL---------CRPADQITILDVV 79
           +I     +S   + + L  L +AG+VET  G  G   L           PA+  +I D++
Sbjct: 45  EIMRQFGVSRTVVREALSRLQEAGLVETRHGV-GTYALQASPGADFRVSPAELASIRDIL 103

Query: 80  KATE 83
            A E
Sbjct: 104 VALE 107


>gi|119718314|ref|YP_925279.1| IclR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119538975|gb|ABL83592.1| transcriptional regulator, IclR family [Nocardioides sp. JS614]
          Length = 269

 Score = 35.7 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +LM+ A        +++IAE   +S+  + ++L  L   G+VE
Sbjct: 29 ILMHFASTPQTDFGVTEIAEELGLSKAAVHRVLASLRSRGLVE 71


>gi|331696227|ref|YP_004332466.1| ArsR family transcriptional regulator [Pseudonocardia
          dioxanivorans CB1190]
 gi|326950916|gb|AEA24613.1| transcriptional regulator, ArsR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 127

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  I+ A  ++   +   L+ L  AG+V + R
Sbjct: 39 LRLLSLIAAHEGGEACVCDISGAFALTGPTISHHLKVLRTAGLVSSQR 86


>gi|297180082|gb|ADI16306.1| transcriptional regulator [uncultured bacterium HF0070_11A08]
          Length = 231

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R   Y A   +     +++A    ++   + + L  L + G V + +G  
Sbjct: 14 VRAGHYAA--GEKMPTEAELARRFNVNRHTVRRALGLLRENGFVLSKKGAG 62


>gi|262369025|ref|ZP_06062354.1| ArsR family transcriptional regulator [Acinetobacter johnsonii
          SH046]
 gi|262316703|gb|EEY97741.1| ArsR family transcriptional regulator [Acinetobacter johnsonii
          SH046]
          Length = 107

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +++L       D    + +I E+  I +  L + L  L KA +V T R G++   RL  P
Sbjct: 35 LKILCVLV---DGEMNVQEIEESTDIHQPTLSQQLTVLRKADMVSTRREGKQIFYRLSDP 91


>gi|254558001|ref|YP_003064418.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300769005|ref|ZP_07078895.1| DeoR family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308182076|ref|YP_003926204.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|254046928|gb|ACT63721.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300493417|gb|EFK28595.1| DeoR family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308047567|gb|ADO00111.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 255

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +      +I+ I++   +S   + K +  L K G+V+ +RG
Sbjct: 14 LRQQGTIKITDISKEISVSRETVRKDIYTLDKQGLVQAIRG 54


>gi|297204172|ref|ZP_06921569.1| MarR-family regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197714143|gb|EDY58177.1| MarR-family regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 160

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
              Y +   +Y   H        ++A+   +  L++ K+ + L  AG++E  R
Sbjct: 35 THAQYSLVASLYGMRHGGERPSQRRLADRTGLEPLYVSKLARSLESAGLLERAR 88


>gi|157149694|ref|YP_001450199.1| biotin--protein ligase [Streptococcus gordonii str. Challis
          substr. CH1]
 gi|262282523|ref|ZP_06060291.1| biotin-protein ligase [Streptococcus sp. 2_1_36FAA]
 gi|157074488|gb|ABV09171.1| BirA bifunctional protein [Streptococcus gordonii str. Challis
          substr. CH1]
 gi|262261814|gb|EEY80512.1| biotin-protein ligase [Streptococcus sp. 2_1_36FAA]
          Length = 311

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          L       D      +IA+   I+   ++K +Q L K GI +E+V+ R  G RL
Sbjct: 7  LYDILSQADDYVNGEKIAQELGITRTSIWKAIQKLEKEGIQIESVKNR--GYRL 58


>gi|150376126|ref|YP_001312722.1| GntR domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030673|gb|ABR62789.1| GntR domain protein [Sinorhizobium medicae WSM419]
          Length = 233

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A   D       ++A    +S   + + L+ L + G++ + RG  
Sbjct: 28 AYKPDERLPTEHELATEFEVSRPIVREALRRLREQGLIYSRRGAG 72


>gi|89899336|ref|YP_521807.1| hypothetical protein Rfer_0524 [Rhodoferax ferrireducens T118]
 gi|89344073|gb|ABD68276.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 281

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 15  MYCAIHNDYPNRISQ--IAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +  A   D P       +A A   ISE  L   L  L  AG++E     RG  RL   A 
Sbjct: 12  LMLAT-GDKPMAARDAILAGALFNISENSLRVTLARLSAAGLIEAAE--RGAYRLGPAAT 68

Query: 72  QITILDV---------VKATEESFFVAECFASHKID 98
            +   +V         ++A + S  V  C A  + D
Sbjct: 69  DL-AGEVATWRTMESRLRAWQGSHIVVHCGALGRSD 103


>gi|78060594|ref|YP_367169.1| transcriptional regulator-like [Burkholderia sp. 383]
 gi|77965144|gb|ABB06525.1| transcriptional regulator-like protein [Burkholderia sp. 383]
          Length = 326

 Score = 35.7 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++     + ++M              +A+A  +SE  + + +  L  AG+ +   RG
Sbjct: 1  MKASRL----LSIMMML--QARGRMTAPALADALEVSERTILRDIDQLSTAGVPIWGDRG 54

Query: 60 RRGGVRLC 67
          R GG +L 
Sbjct: 55 RNGGFQLS 62


>gi|330995023|ref|ZP_08318942.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          sp. SXCC-1]
 gi|329757912|gb|EGG74437.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          sp. SXCC-1]
          Length = 113

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + +      H         +A    + +  +   L  L +AG++ + R
Sbjct: 13 LSQSTR--LEIFRLLVRHEPNGLPAGDVARHLDVPQNTISAHLATLTRAGLLTSQR 66


>gi|307727339|ref|YP_003910552.1| regulatory protein ArsR [Burkholderia sp. CCGE1003]
 gi|307587864|gb|ADN61261.1| regulatory protein ArsR [Burkholderia sp. CCGE1003]
          Length = 111

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R ++     ++    +  I E   +S+  + K L+ L +AG VE+ 
Sbjct: 14 RAILSLLASSER--SVGDIEEQLNLSQPSVSKHLRVLREAGFVESR 57


>gi|257466803|ref|ZP_05631114.1| aminotransferase class-I [Fusobacterium gonidiaformans ATCC
          25563]
 gi|315917951|ref|ZP_07914191.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC
          25563]
 gi|313691826|gb|EFS28661.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC
          25563]
          Length = 477

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           I QI+    ++   + K+ Q L + G + +++G+ 
Sbjct: 38 SIRQISIKFQVNLNTVLKVFQTLEEEGYLYSIKGKG 73


>gi|257452831|ref|ZP_05618130.1| aminotransferase class-I [Fusobacterium sp. 3_1_5R]
 gi|317059372|ref|ZP_07923857.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|313685048|gb|EFS21883.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
          Length = 477

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           I QI+    ++   + K+ Q L + G + +++G+ 
Sbjct: 38 SIRQISIKFQVNLNTVLKVFQTLEEEGYLYSIKGKG 73


>gi|269119286|ref|YP_003307463.1| DeoR family transcriptional regulator [Sebaldella termitidis ATCC
          33386]
 gi|268613164|gb|ACZ07532.1| transcriptional regulator, DeoR family [Sebaldella termitidis
          ATCC 33386]
          Length = 255

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          V++   ++ +    + ++++   ISE  + K LQ L K G ++  R   G ++L R    
Sbjct: 9  VILDM-LNKEGKVNVKELSKTFNISESMIRKDLQSLEKNGKLK--RTYGGAIQLER---- 61

Query: 73 ITILDVVKATEESFFVAE 90
           T++D     EE F +  
Sbjct: 62 -TLVD-----EEDFIITR 73


>gi|219856296|ref|YP_002473418.1| hypothetical protein CKR_2953 [Clostridium kluyveri NBRC 12016]
 gi|219570020|dbj|BAH08004.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 329

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +        S+++E   + +  +++ +  L KA I V T +GR GG  + + 
Sbjct: 23 LQYKELTTASELSEMLKVDKKTIYRYINSLNKANIPVHTRKGRYGGFYIDKS 74


>gi|187920423|ref|YP_001889455.1| GntR domain-containing protein [Burkholderia phytofirmans PsJN]
 gi|187718861|gb|ACD20084.1| GntR domain protein [Burkholderia phytofirmans PsJN]
          Length = 233

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R  +  A H           Q++E   +S   + + +  L   G++   RG  
Sbjct: 17 ALRAEID-AGHFPAESRLPTEQQLSERLNVSRSVVREAIAQLKSDGVLVARRGAG 70


>gi|153955954|ref|YP_001396719.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348812|gb|EDK35348.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 320

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +        S+++E   + +  +++ +  L KA I V T +GR GG  + + 
Sbjct: 14 LQYKELTTASELSEMLKVDKKTIYRYINSLNKANIPVHTRKGRYGGFYIDKS 65


>gi|150399266|ref|YP_001323033.1| phosphate uptake regulator PhoU [Methanococcus vannielii SB]
 gi|150011969|gb|ABR54421.1| phosphate uptake regulator, PhoU [Methanococcus vannielii SB]
          Length = 284

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + P     IAE   +S  ++ K+L+PLV  G + 
Sbjct: 18 EEEPETQDDIAEKLNVSRRYVAKLLKPLVDEGAIR 52


>gi|223933439|ref|ZP_03625424.1| GTP-sensing pleiotropic transcriptional repressor CodY
           [Streptococcus suis 89/1591]
 gi|223897877|gb|EEF64253.1| GTP-sensing pleiotropic transcriptional repressor CodY
           [Streptococcus suis 89/1591]
          Length = 262

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           +L   A +       S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|294812321|ref|ZP_06770964.1| Putative AfsR-like transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324920|gb|EFG06563.1| Putative AfsR-like transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 1033

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 11  IRVLM-YCAIHNDYPNRISQIAEA-------CCISELFLFKILQPLVKAGIVETVRGRRG 62
           +R L+   A+    P  +  IA                +  ++  L +A   E V    G
Sbjct: 26  LRALLTVLALRPGRPVTVGLIAAEIWDEEPPEDTPGA-VQALVGRLRRAIGREAVESVAG 84

Query: 63  GVRLCRPADQITI-------LDVVKATE 83
           G RL   AD + +        + V+A E
Sbjct: 85  GYRLRADADDVDLHRFDRLAGEGVRAFE 112


>gi|158423710|ref|YP_001525002.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330599|dbj|BAF88084.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 113

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+      +    +  +AE   +S+  L + L  +   G+VET R
Sbjct: 37 LLVLCQLVEGERSVGDLAEVVGLSQSALSQHLAKMRLQGLVETRR 81


>gi|333023470|ref|ZP_08451534.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
          Tu6071]
 gi|332743322|gb|EGJ73763.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
          Tu6071]
          Length = 126

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 40 LRLLSMIASRAGGEVCVCDLTPAFDLSQPTISHHLKLLKQAGLIDSER 87


>gi|332669850|ref|YP_004452858.1| putative transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338888|gb|AEE45471.1| putative transcriptional regulator [Cellulomonas fimi ATCC 484]
          Length = 244

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI------VETVRGR 60
          L++  + +  P  + ++A+   + E    + LQ LV  G       V T RGR
Sbjct: 19 LLHL-LQSGGPATVGELADRTGLHENTAREHLQRLVVDGFVHREPEVRTTRGR 70


>gi|319936327|ref|ZP_08010743.1| hypothetical protein HMPREF9488_01576 [Coprobacillus sp. 29_1]
 gi|319808442|gb|EFW04994.1| hypothetical protein HMPREF9488_01576 [Coprobacillus sp. 29_1]
          Length = 300

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          ++Y  +   +     ++AE   +S   +++ +  L  AGI V   +G+ GG+
Sbjct: 9  MVYLLLQKGH-MTAPELAEHFEVSVRTIYRDIDILSLAGIPVYATQGKGGGI 59


>gi|307296739|ref|ZP_07576558.1| regulatory protein ArsR [Sphingobium chlorophenolicum L-1]
 gi|306877868|gb|EFN09093.1| regulatory protein ArsR [Sphingobium chlorophenolicum L-1]
          Length = 112

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    H        ++A+A  + +  +   L  L +AG+V + R
Sbjct: 21 AFRLLV---RHEPEGLPAGEVAKALDVPQNTMSVHLATLARAGLVTSER 66


>gi|290958818|ref|YP_003490000.1| regulatory protein [Streptomyces scabiei 87.22]
 gi|260648344|emb|CBG71455.1| putative regulatory protein [Streptomyces scabiei 87.22]
          Length = 345

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
             S++A    +S   +   +  L ++G++ + R   GG+ L
Sbjct: 274 TTSEVAARVGLSPATVSHHVAVLRESGLLTSRR--LGGIVL 312


>gi|257880793|ref|ZP_05660446.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883436|ref|ZP_05663089.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257892137|ref|ZP_05671790.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260558605|ref|ZP_05830795.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|257815021|gb|EEV43779.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257819094|gb|EEV46422.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257828497|gb|EEV55123.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260075343|gb|EEW63655.1| conserved hypothetical protein [Enterococcus faecium C68]
          Length = 173

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68
           +L+     +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L     
Sbjct: 10  ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65

Query: 69  -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124
            P    T  +V  A   +     C            +   + S+L+     +   L  
Sbjct: 66  LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122


>gi|226306638|ref|YP_002766598.1| hypothetical protein RER_31510 [Rhodococcus erythropolis PR4]
 gi|226185755|dbj|BAH33859.1| hypothetical protein RER_31510 [Rhodococcus erythropolis PR4]
          Length = 343

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +  + VLM    H +    + ++A     S   + +IL  L + G V+  
Sbjct: 136 EVAVSVLM----HPERTFAVRELARELGRSPSTVSEILAALRRDGFVDAR 181


>gi|182436829|ref|YP_001824548.1| AraC family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326777425|ref|ZP_08236690.1| transcriptional regulator, AraC family [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465345|dbj|BAG19865.1| putative AraC-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657758|gb|EGE42604.1| transcriptional regulator, AraC family [Streptomyces cf. griseus
           XylebKG-1]
          Length = 321

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG---IVETVRGRRGGVRL 66
            +R +        +P   +++A    +S   L K    LV  G    +   R       L
Sbjct: 211 ALRAM---HADPAHPWTTAELAVRAGVSRTTLAKRFTELVGEGPVAYLTAWRMTLAADLL 267

Query: 67  CRPADQITILDVVKAT 82
            RP  ++T+  V +  
Sbjct: 268 TRP--ELTVAAVARRV 281


>gi|167629558|ref|YP_001680057.1| hypothetical protein HM1_1473 [Heliobacterium modesticaldum Ice1]
 gi|167592298|gb|ABZ84046.1| conserved hypothetical protein [Heliobacterium modesticaldum
          Ice1]
          Length = 237

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRRGG-VRLCR 68
          Y   H +    + +IA+   I        L  L + G++E      ++ GR G    L +
Sbjct: 23 YIVNHPNATCTVKEIAQEFSIHPNVARLHLSKLEEIGLLESGWDHQSMPGRPGRVYSLRK 82

Query: 69 PADQITI 75
           A  IT+
Sbjct: 83 KA--ITL 87


>gi|148252441|ref|YP_001237026.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404614|gb|ABQ33120.1| Putative transcriptional regulator protein, Fnr/CRP family
           [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +AEA   S + L ++LQ L   G++E  RG 
Sbjct: 178 LAEAIGTSTVHLNRVLQELRTKGLLEIERGA 208


>gi|9937220|gb|AAG02351.1|AF210249_10 metal-dependent regulatory protein [Streptomyces verticillus]
          Length = 113

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL       D P  +  +  A  I    L + L  L ++GIV + R
Sbjct: 22 IRVLELL---QDGPMPVRDLLAAIEIEPSALSQQLAVLRRSGIVTSTR 66


>gi|52079695|ref|YP_078486.1| DNA-binding protein [Bacillus licheniformis ATCC 14580]
 gi|52785058|ref|YP_090887.1| hypothetical protein BLi01288 [Bacillus licheniformis ATCC 14580]
 gi|319646507|ref|ZP_08000736.1| hypothetical protein HMPREF1012_01772 [Bacillus sp. BT1B_CT2]
 gi|52002906|gb|AAU22848.1| hypothetical DNA-binding protein [Bacillus licheniformis ATCC
          14580]
 gi|52347560|gb|AAU40194.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391095|gb|EFV71893.1| hypothetical protein HMPREF1012_01772 [Bacillus sp. BT1B_CT2]
          Length = 315

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          +   IH        ++A    +S   + + L  L   G+ + +  G  GG  L    
Sbjct: 10 LMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYLLNEP 66


>gi|22537099|ref|NP_687950.1| GntR family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|25010982|ref|NP_735377.1| GntR family transcriptional regulator [Streptococcus agalactiae
          NEM316]
 gi|76788533|ref|YP_329655.1| GntR family transcriptional regulator [Streptococcus agalactiae
          A909]
 gi|77406845|ref|ZP_00783874.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          H36B]
 gi|77408945|ref|ZP_00785668.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          COH1]
 gi|77411009|ref|ZP_00787364.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          CJB111]
 gi|77413239|ref|ZP_00789436.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          515]
 gi|22533959|gb|AAM99822.1|AE014234_12 transcriptional regulator, GntR family [Streptococcus agalactiae
          2603V/R]
 gi|23095382|emb|CAD46587.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563590|gb|ABA46174.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          A909]
 gi|77160699|gb|EAO71813.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          515]
 gi|77162933|gb|EAO73889.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          CJB111]
 gi|77172445|gb|EAO75591.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          COH1]
 gi|77174539|gb|EAO77379.1| transcriptional regulator, GntR family [Streptococcus agalactiae
          H36B]
 gi|319744958|gb|EFV97288.1| GntR family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 122

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + ++A+   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVRELAQEAGVNPNTMQRAFTELEREGMVFSQR 68


>gi|310639970|ref|YP_003944728.1| arsr family transcriptional regulator [Paenibacillus polymyxa
          SC2]
 gi|309244920|gb|ADO54487.1| ArsR family transcriptional regulator [Paenibacillus polymyxa
          SC2]
          Length = 318

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRG 62
          + +++  A   + P  I ++AEA  +S   +   ++ L +A I+ T    GR G
Sbjct: 22 LNMIVLLA---EKPMNIRELAEALGLSSAIMTMHVKKLERASIISTKMLPGRGG 72


>gi|308067258|ref|YP_003868863.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856537|gb|ADM68325.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 318

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RGRRG 62
          + +++  A   + P  I ++AEA  +S   +   ++ L +A I+ T    GR G
Sbjct: 22 LNMIVLLA---EKPMNIRELAEALGLSSAIMTMHVKKLERASIISTKMLPGRGG 72


>gi|306825665|ref|ZP_07459004.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432026|gb|EFM35003.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 262

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLIGDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|271964160|ref|YP_003338356.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270507335|gb|ACZ85613.1| GntR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
          Length = 115

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             D       +AEA  I+   + + L+ L   G++E  RGR G   L RP
Sbjct: 31 APGDRLPPARDLAEALGINANTVLRALRDLRDEGVLEFRRGR-GVSVLSRP 80


>gi|260430039|ref|ZP_05784014.1| regulatory protein IclR [Citreicella sp. SE45]
 gi|260418962|gb|EEX12217.1| regulatory protein IclR [Citreicella sp. SE45]
          Length = 253

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + +L+           ++QI+E    ++    + L  L   G  ET  GR G  RL 
Sbjct: 13 ALEILLILGDATAEGFSLAQISERLGCAKSVAHRSLSALRAKGFAETA-GRYGHYRLG 69


>gi|300780724|ref|ZP_07090578.1| ArsR family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
 gi|300532431|gb|EFK53492.1| ArsR family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
          Length = 156

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +++++     N  P+ + ++      S+  + + L+ L  AG+V   R GR    RL  P
Sbjct: 31 LQIILLL---NQQPHVVHELVTELEKSQPLVSQHLRVLKNAGLVSATRTGREMVYRLAIP 87

Query: 70 ADQITILDVVKATEE 84
              +++ ++++   
Sbjct: 88 ----SVMSIIESISG 98


>gi|238755624|ref|ZP_04616960.1| Transcriptional regulator, ArsR family/rhodanese-like domain
          protein [Yersinia ruckeri ATCC 29473]
 gi|238706137|gb|EEP98518.1| Transcriptional regulator, ArsR family/rhodanese-like domain
          protein [Yersinia ruckeri ATCC 29473]
          Length = 182

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVK 80
           ++AE   IS     + LQ L + G V+  R G+     L R   Q  +L  ++
Sbjct: 2  ERLAELANISIANASQHLQHLKRVGFVQARRDGKNVLYSLGRGPVQ-NLLTAIR 54


>gi|228938569|ref|ZP_04101176.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228971447|ref|ZP_04132073.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978061|ref|ZP_04138439.1| Transcriptional regulator, GntR [Bacillus thuringiensis Bt407]
 gi|229144057|ref|ZP_04272473.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST24]
 gi|228639454|gb|EEK95868.1| Transcriptional regulator, GntR [Bacillus cereus BDRD-ST24]
 gi|228781533|gb|EEM29733.1| Transcriptional regulator, GntR [Bacillus thuringiensis Bt407]
 gi|228788314|gb|EEM36267.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228821075|gb|EEM67093.1| Transcriptional regulator, GntR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 111

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 14 LPGDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 56


>gi|225869311|ref|YP_002745259.1| MarR family transcriptional regulator [Streptococcus equi subsp.
          zooepidemicus]
 gi|225702587|emb|CAX00597.1| MarR family regulatory protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 149

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           VL++   H D    +  I +   IS+     +++ + K G +  V
Sbjct: 37 HVLVFLHCHQDRDIFVKDIEKELQISKSVTSNLVKRMEKNGFIRVV 82


>gi|254453576|ref|ZP_05067013.1| phosphonates metabolism transcriptional regulator PhnF
          [Octadecabacter antarcticus 238]
 gi|198267982|gb|EDY92252.1| phosphonates metabolism transcriptional regulator PhnF
          [Octadecabacter antarcticus 238]
          Length = 237

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
            D     +  A    ++   + + L  L   GIV   RG   GV +        I   V
Sbjct: 26 QGDKLPTEAVFAARFGVNRHTVRQALGALADEGIVHARRGA--GVFVAMTPTDYPIGRRV 83

Query: 80 K 80
          +
Sbjct: 84 R 84


>gi|187929868|ref|YP_001900355.1| IclR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187726758|gb|ACD27923.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J]
          Length = 256

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          RVLM  A    +  P    ++ E   + +  L++ +  L + G V    G
Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71


>gi|28379860|ref|NP_786752.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|28272701|emb|CAD65630.1| transcription regulator [Lactobacillus plantarum WCFS1]
          Length = 255

 Score = 35.3 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +      +I+ I++   +S   + K +  L K G+V+ +RG
Sbjct: 14 LRQQGTIKITDISKEISVSRETVRKDIYTLDKQGLVQAIRG 54


>gi|329921987|ref|ZP_08277794.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
 gi|328942447|gb|EGG38710.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
          Length = 305

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +R+L Y A   D P  +S++A         L   L  L  AG++ + 
Sbjct: 232 LRLLRYIA---DEPKAVSEMASELGQPYEQLMHHLMILRAAGLLRSH 275


>gi|296125224|ref|YP_003632476.1| ribonuclease BN [Brachyspira murdochii DSM 12563]
 gi|296017040|gb|ADG70277.1| ribonuclease BN [Brachyspira murdochii DSM 12563]
          Length = 583

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITILD 77
           I+      + ++A+    +   + +I   L K+  V + V G      L    + ITI D
Sbjct: 473 INRKKAITMYELAKELRTAPNTITEISNALEKSMFVIKIVNGSNISYSLGSQPESITIGD 532

Query: 78  VV 79
           ++
Sbjct: 533 IL 534


>gi|227488724|ref|ZP_03919040.1| DeoR family transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
 gi|227091146|gb|EEI26458.1| DeoR family transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51867]
          Length = 276

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  ++R +     L+  ++  D    +  +A+AC ++     + L  L K G+V   R  
Sbjct: 1  MRFSERQE-----LIETSLARDGHVSVPALAKACGVAPETARRDLAKLEKMGLV---RRV 52

Query: 61 RGG 63
           GG
Sbjct: 53 HGG 55


>gi|88604407|ref|YP_504585.1| biotin--acetyl-CoA-carboxylase ligase [Methanospirillum hungatei
          JF-1]
 gi|88189869|gb|ABD42866.1| Biotin--acetyl-CoA-carboxylase ligase [Methanospirillum hungatei
          JF-1]
          Length = 326

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          ++     +D P   S+IAEA  +S+  ++K +  L + G   T  G  G   L
Sbjct: 8  VLEILERSDKPVETSEIAEALSLSKSAVWKHINELRQLGYDITASGEEG-YVL 59


>gi|331697017|ref|YP_004333256.1| IclR family transcriptional regulator [Pseudonocardia
          dioxanivorans CB1190]
 gi|326951706|gb|AEA25403.1| transcriptional regulator, IclR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 258

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +   D   R+L   + +    + +S+IA A  + +  + +IL+ L    +V 
Sbjct: 13 SPAVDSAARILELLSRYRTRTSTLSEIAAALELPKSTVLRILRTLQAHSLVH 64


>gi|308068754|ref|YP_003870359.1| AsrR family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858033|gb|ADM69821.1| Transcriptional regulator, ArsR family [Paenibacillus polymyxa
           E681]
          Length = 198

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 1   MHLTKRTDY--GI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
           M L K  +Y   +      R+L+  +           +A+   +S+  +      L +AG
Sbjct: 1   MQLDKMVNYHKALADPTRMRILLLLSR---GEMHGQALAKKLNLSQPTVTHHASKLREAG 57

Query: 53  IVETVRGRRGGV-----RLCRPADQITILDVVKATEESFFVAE 90
           +++  R +          L R   + T+  + +  E    V+E
Sbjct: 58  LIKERRDKNTVYFTLNPELIRQHAEATVRFIFEKGEGEEEVSE 100


>gi|303326997|ref|ZP_07357439.1| regulatory protein GntR, HTH [Desulfovibrio sp. 3_1_syn3]
 gi|302862985|gb|EFL85917.1| regulatory protein GntR, HTH [Desulfovibrio sp. 3_1_syn3]
          Length = 238

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VV 79
            D       +AE+  +S   + K +Q L   G++E+ +G  G     R  D   + + ++
Sbjct: 36  GDKLPPERALAESFGVSRSSIRKAIQMLAGKGLLESRQG-DGTYV--RAPDMEPLKNAIL 92

Query: 80  KATEESFFVAE 90
           +A +    V +
Sbjct: 93  EAVDSENLVFD 103


>gi|115433821|ref|XP_001217047.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189899|gb|EAU31599.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 459

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 5   KRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53
             T+Y        A H     P  IS++A+A  + E  L +I++ L + G 
Sbjct: 84  SATEYA------LADHVQKLQPCSISELAQASGLHEQGLSQIVRYLREMGY 128


>gi|107022241|ref|YP_620568.1| GntR-like [Burkholderia cenocepacia AU 1054]
 gi|116689186|ref|YP_834809.1| GntR domain-containing protein [Burkholderia cenocepacia HI2424]
 gi|170732490|ref|YP_001764437.1| GntR domain-containing protein [Burkholderia cenocepacia MC0-3]
 gi|105892430|gb|ABF75595.1| transcriptional regulator, GntR family [Burkholderia cenocepacia AU
           1054]
 gi|116647275|gb|ABK07916.1| transcriptional regulator, GntR family [Burkholderia cenocepacia
           HI2424]
 gi|169815732|gb|ACA90315.1| GntR domain protein [Burkholderia cenocepacia MC0-3]
          Length = 249

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70
              D     +++  A  +S   + + +  +  +G+VET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQTLGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 139


>gi|296269252|ref|YP_003651884.1| GntR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092039|gb|ADG87991.1| transcriptional regulator, GntR family [Thermobispora bispora DSM
          43833]
          Length = 132

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI-TIL-DV 78
           D       IA+A  ++   + + L+ L   G++E  RGR  GV + R  D   ++   V
Sbjct: 33 GDRLPPARDIADALGVNVNTVLRSLRELRDEGLLEFRRGR--GVTVVRRPDARESLAPRV 90

Query: 79 VKATEE 84
          V+  EE
Sbjct: 91 VELLEE 96


>gi|218677048|ref|YP_002395867.1| putative transcriptional regulator [Vibrio splendidus LGP32]
 gi|218325316|emb|CAV27342.1| putative transcriptional regulator [Vibrio splendidus LGP32]
          Length = 475

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +D    I Q++E   +S+  + +  Q L   G V +V   + G R+  P + I
Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYRVKAPNNTI 79


>gi|222480263|ref|YP_002566500.1| transcriptional regulator, ArsR family [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222453165|gb|ACM57430.1| transcriptional regulator, ArsR family [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 223

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L   A     P  +++I+E   +S   +   L+ L +AG+VE+ 
Sbjct: 17 RILRLLATK---PCYVTEISEYLDVSPKAVIDHLRKLDEAGLVEST 59


>gi|152972529|ref|YP_001337675.1| hypothetical protein KPN_04024 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|329997051|ref|ZP_08302678.1| hypothetical protein HMPREF9538_00314 [Klebsiella sp. MS 92-3]
 gi|150957378|gb|ABR79408.1| hypothetical protein KPN_04024 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328539166|gb|EGF65197.1| hypothetical protein HMPREF9538_00314 [Klebsiella sp. MS 92-3]
          Length = 232

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 11  IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+   A + +   R    +S I     +S   +  IL  L K G +   RG 
Sbjct: 166 VRTLLTELADYPEEYRRQINALSFIQRRTNLSRSRVMSILAELRKGGYITVHRGV 220


>gi|126725842|ref|ZP_01741684.1| putative transcription regulator protein [Rhodobacterales
          bacterium HTCC2150]
 gi|126705046|gb|EBA04137.1| putative transcription regulator protein [Rhodobacterales
          bacterium HTCC2150]
          Length = 108

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L    A++   P  ++ +A+   IS   + + L+ L  AG+V   
Sbjct: 16 RMLFETLAMN---PMSVADLAQTQPISRPAVSQHLKVLENAGLVTAS 59


>gi|7648577|gb|AAF65593.1|AF139916_14 hypothetical protein [Brevibacterium linens]
          Length = 231

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
            IR+L++ A           IA    IS     K++  LV  G +
Sbjct: 86  AIRMLIH-AQKQGRVVTPKDIARDVGISSASTTKLIDRLVAGGHL 129


>gi|54024435|ref|YP_118677.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54015943|dbj|BAD57313.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 294

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-- 68
          + +L   A   + P  ++ IAE   I+      +L  L  AG    VR    G RL    
Sbjct: 20 VEILTLLAGAAE-PLPVAAIAERLGIARATATAVLAELDLAGW--AVRVPDRGYRLGPGL 76

Query: 69 --------PADQITILDVVKAT 82
                  P +   I D+++  
Sbjct: 77 LTLTGPPLPPE---IGDILQEL 95


>gi|332663128|ref|YP_004445916.1| GntR family transcriptional regulator [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332331942|gb|AEE49043.1| transcriptional regulator, GntR family [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 336

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----GG 63
              ND    IS+++    ++   + K  + L + G + +V+G+     GG
Sbjct: 30 LLKKNDQLPSISEMSAHYDLARDTVEKAYRELRERGFIVSVQGKGYYVSGG 80


>gi|330832185|ref|YP_004401010.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis ST3]
 gi|329306408|gb|AEB80824.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis ST3]
          Length = 262

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           +L   A +       S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|326385159|ref|ZP_08206827.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326196124|gb|EGD53330.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 131

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I+ A  +S+  +   L+ L  AG++++ R
Sbjct: 45 LRLFSLIASHAGGEACVCDISPAVDVSQPTVSHHLKVLKAAGLLDSER 92


>gi|310640033|ref|YP_003944791.1| deor family transcriptional regulator [Paenibacillus polymyxa
          SC2]
 gi|309244983|gb|ADO54550.1| DeoR family transcriptional regulator [Paenibacillus polymyxa
          SC2]
          Length = 310

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
           LM   + +       ++AE   +S   + + L  L + G+ + T  G  GG R
Sbjct: 7  ALMRI-LDSRKKYTARELAERFGVSVRTIQRDLDYLQQTGLPLYTETGPHGGYR 59


>gi|302023375|ref|ZP_07248586.1| transcriptional repressor CodY [Streptococcus suis 05HAS68]
          Length = 262

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           +L   A +       S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 194 ILGELAGNEGQ-LTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|262045637|ref|ZP_06018655.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037022|gb|EEW38275.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 232

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 11  IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+   A + +   R    +S I     +S   +  IL  L K G +   RG 
Sbjct: 166 VRTLLTELADYPEEYRRQINALSFIQRRTNLSRSRVMSILAELRKGGYITVHRGV 220


>gi|239933278|ref|ZP_04690231.1| GntR family transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291441632|ref|ZP_06581022.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291344527|gb|EFE71483.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 276

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            D     +++     +S   L + L+ L   G+V   RG  GG
Sbjct: 64  GDRLRPEAEMLAHYNVSRETLREALRLLEVQGLVSIKRGPGGG 106


>gi|227542279|ref|ZP_03972328.1| DeoR family transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
 gi|227181940|gb|EEI62912.1| DeoR family transcriptional regulator [Corynebacterium
          glucuronolyticum ATCC 51866]
          Length = 276

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  ++R +     L+  ++  D    +  +A+AC ++     + L  L K G+V   R  
Sbjct: 1  MRFSERQE-----LIETSLARDGHVSVPSLAKACGVAPETARRDLAKLEKMGLV---RRV 52

Query: 61 RGG 63
           GG
Sbjct: 53 HGG 55


>gi|147920495|ref|YP_685711.1| hypothetical protein RCIX1061 [uncultured methanogenic archaeon
          RC-I]
 gi|110621107|emb|CAJ36385.1| conserved hypothetical protein [uncultured methanogenic archaeon
          RC-I]
          Length = 142

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCR 68
          I ++ + A +ND+   IS+I+E   +S   +   L  L+   ++E  +  G     RL R
Sbjct: 13 ITIVDFLAENNDFAYTISEISEFTGLSRPTVHSKLPMLIHNRLIEIDSQAGHVKTYRLAR 72

Query: 69 P 69
           
Sbjct: 73 N 73


>gi|145224056|ref|YP_001134734.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK]
 gi|315444392|ref|YP_004077271.1| ArsR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145216542|gb|ABP45946.1| transcriptional regulator, ArsR family [Mycobacterium gilvum
           PYR-GCK]
 gi|315262695|gb|ADT99436.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
          Length = 135

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            D       +A A  +SE  +   L  L +AG+VE+ R
Sbjct: 71  PDEELCSGDLAVAVGLSESTVSHHLSHLRRAGLVESAR 108


>gi|67515727|ref|XP_657749.1| hypothetical protein AN0145.2 [Aspergillus nidulans FGSC A4]
 gi|40746862|gb|EAA66018.1| hypothetical protein AN0145.2 [Aspergillus nidulans FGSC A4]
          Length = 1201

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
               I  +AE   + E  L +I++    AG ++
Sbjct: 258 GTVPIKDVAELAGVPETHLSRIIRMTATAGFLD 290


>gi|322377978|ref|ZP_08052466.1| adc operon repressor AdcR [Streptococcus sp. M334]
 gi|321281154|gb|EFX58166.1| adc operon repressor AdcR [Streptococcus sp. M334]
          Length = 170

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 66  HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 109


>gi|269215427|ref|ZP_06159281.1| regulatory protein GntR, HTH [Slackia exigua ATCC 700122]
 gi|269130914|gb|EEZ61989.1| regulatory protein GntR, HTH [Slackia exigua ATCC 700122]
          Length = 141

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  +    +  +A    I+   + K    L   G VE+ RGR 
Sbjct: 39 VPGEQLPTVRALASDISINYNTVNKAYLALKSDGYVESTRGRG 81


>gi|221633518|ref|YP_002522743.1| putative transcriptional regulator [Thermomicrobium roseum DSM
          5159]
 gi|221156809|gb|ACM05936.1| putative transcriptional regulator [Thermomicrobium roseum DSM
          5159]
          Length = 346

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV-KAGIVETVRGRRGGVRL 66
          L+  A       R  ++A    +SE  + K LQ L  + G+    R   GG  L
Sbjct: 25 LVMLAQAPKRYTR-RELAARYQVSERQIGKDLQFLRERLGL-AIERAPGGGYYL 76


>gi|254476314|ref|ZP_05089700.1| regulatory protein GntR, HTH [Ruegeria sp. R11]
 gi|214030557|gb|EEB71392.1| regulatory protein GntR, HTH [Ruegeria sp. R11]
          Length = 242

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     ++++E   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELSEQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|254380949|ref|ZP_04996315.1| GntR-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194339860|gb|EDX20826.1| GntR-family transcriptional regulator [Streptomyces sp. Mg1]
          Length = 137

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           + ++T   +R  M      D      ++ EA  ++   + K  + L + G+VE  RG
Sbjct: 21 QIVQQTKQALR--MGLLEPGDKLPAAREVVEATAVNPNTVLKAYRELEREGLVEARRG 76


>gi|120611014|ref|YP_970692.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1]
 gi|120589478|gb|ABM32918.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1]
          Length = 379

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG--VRL---CR 68
           L   A H   P R+  +AE      ++  + +  L +AG V  +RG  G     L    R
Sbjct: 151 LALIAQHQ--PMRLEHLAELTGRGRVYTRQRVHKLRRAGKVN-IRGVDGSWRYVLPDYVR 207

Query: 69  PADQI 73
               I
Sbjct: 208 TPADI 212


>gi|111025613|ref|YP_708033.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824592|gb|ABG99875.1| transcriptional regulator, IclR family protein [Rhodococcus
          jostii RHA1]
          Length = 284

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +R L+     +  P R+S++AE   ++   + + L  L   G+VE   G  GG 
Sbjct: 41 LRCLV----SSPNPLRVSELAELSGLAYTTVHRALGSLRAEGLVE-QGGPNGGY 89


>gi|120403274|ref|YP_953103.1| regulatory protein ArsR [Mycobacterium vanbaalenii PYR-1]
 gi|119956092|gb|ABM13097.1| transcriptional regulator, ArsR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 129

 Score = 35.3 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
           R+ +   +H      +S +A A   SE  + + L+ L + G V   R GR    RL    
Sbjct: 57  RLEILLCLHRAPGICVSDLAAALGRSENTVSQALRVLRQQGWVTNTRAGRSVTYRL---- 112

Query: 71  DQITILDVVK 80
           +  T+ D++ 
Sbjct: 113 EDETVHDLLH 122


>gi|326331868|ref|ZP_08198155.1| regulatory protein [Nocardioidaceae bacterium Broad-1]
 gi|325950365|gb|EGD42418.1| regulatory protein [Nocardioidaceae bacterium Broad-1]
          Length = 241

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           H +      ++A+   ++ +   + L  L   G+V T RGR GG
Sbjct: 37 AHGERLPSEPELAQMLGVATVTAREALVALRAKGLVVTTRGRGGG 81


>gi|313835550|gb|EFS73264.1| oxidoreductase family, NAD-binding Rossmann fold protein
           [Propionibacterium acnes HL037PA2]
          Length = 818

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72
           +   +        + + EA  +S   +  IL  L  +G V  +RG    GG  L RPA  
Sbjct: 66  VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 121

Query: 73  ITI-LDV 78
            ++  DV
Sbjct: 122 WSLGGDV 128


>gi|302339154|ref|YP_003804360.1| ArsR family transcriptional regulator [Spirochaeta smaragdinae
          DSM 11293]
 gi|301636339|gb|ADK81766.1| transcriptional regulator, ArsR family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 308

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRG 62
          IRV +   +  + P  I++IA+A  +++  +   +  L KAG++  E+++G++G
Sbjct: 25 IRVEILL-LVQERPRNINEIAQALDMAQSTIATNVMVLEKAGLIRTESIKGKKG 77


>gi|326790332|ref|YP_004308153.1| AraC family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326541096|gb|ADZ82955.1| transcriptional regulator, AraC family [Clostridium lentocellum DSM
           5427]
          Length = 298

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58
           Y + H      ++ IAE   IS  +L KI +    L     + ++R
Sbjct: 201 YISAHYTEDLTLTSIAEQFYISPFYLSKIFKKSTNLSIIEYINSLR 246


>gi|295980970|emb|CBJ57218.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 169

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR--- 68
           +L+     +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L     
Sbjct: 10  ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFL 65

Query: 69  -PADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124
            P    T  +V  A   +     C            +   + S+L+     +   L  
Sbjct: 66  LPPVMFTAAEV-GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 122


>gi|289579814|ref|YP_003478280.1| hypothetical protein Nmag_0120 [Natrialba magadii ATCC 43099]
 gi|289529367|gb|ADD03718.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
          Length = 114

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          RV+ Y A ++D     S+IA    + +  +  +L  L  A +V 
Sbjct: 24 RVITYLARNDDKAFTPSEIAAGTGVKKGSVSTVLSRLEDANLVR 67


>gi|288559839|ref|YP_003423325.1| phosphate uptake regulator PhoU [Methanobrevibacter ruminantium
          M1]
 gi|288542549|gb|ADC46433.1| phosphate uptake regulator PhoU [Methanobrevibacter ruminantium
          M1]
          Length = 297

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          D P+   +IAE   IS  ++ ++L+PL++  IV+
Sbjct: 18 DKPSTQDEIAEKLKISRRYVTQLLKPLIEEDIVK 51


>gi|312198084|ref|YP_004018145.1| GCN5-related N-acetyltransferase [Frankia sp. EuI1c]
 gi|311229420|gb|ADP82275.1| GCN5-related N-acetyltransferase [Frankia sp. EuI1c]
          Length = 317

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGGVRLC 67
           RVL   A         +++     +   +L +IL+     G+ ET      GRR  VRL 
Sbjct: 51  RVLYELAQRP--TTSAAELRRELDVDASYLGRILRRFGADGLTETTASTQDGRRRDVRLT 108

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
           R     T  ++ + ++E         S                L  A+ A  +VL     
Sbjct: 109 RHGHD-TFAELNRLSDERAHRFLGALSEADQ----------HRLLTAMEAIQNVLGGRPR 157

Query: 128 ECLV 131
             LV
Sbjct: 158 ADLV 161


>gi|229095946|ref|ZP_04226922.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-29]
 gi|228687456|gb|EEL41358.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-29]
          Length = 126

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|97182146|sp|Q9LBW6|RMPR_MYCGS RecName: Full=Putative HTH-type transcriptional regulator rmpR;
          AltName: Full=DNA-binding regulatory protein rmpR
          Length = 274

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +     + ++E   +    L + L  L + G+VET RGR GG
Sbjct: 40 GERLPPEAALSEMFGVGGATLREALSELRERGVVETRRGRSGG 82


>gi|120406816|ref|YP_956645.1| UbiC transcription regulator-associated domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119959634|gb|ABM16639.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 245

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A   D     +++++   ++ L + + L  L + G++ETVRG+ 
Sbjct: 33 AKPGDKLPSEAELSQEFEVNRLTVRRALDELNQRGLIETVRGKG 76


>gi|150016758|ref|YP_001309012.1| GntR family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149903223|gb|ABR34056.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB
          8052]
          Length = 132

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +    + ++A    I+   + K    L + GI+ET+RG+ 
Sbjct: 32 GEKLPSVRELASILMINPNTISKAYGELEREGIIETLRGKG 72


>gi|324324687|gb|ADY19947.1| transcriptional regulator [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 313

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|301052300|ref|YP_003790511.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|300374469|gb|ADK03373.1| possible transcriptional regulator [Bacillus cereus biovar
          anthracis str. CI]
          Length = 313

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|239927349|ref|ZP_04684302.1| DeoR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291435690|ref|ZP_06575080.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291338585|gb|EFE65541.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 375

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                  +++A    +S   +++ ++ L  AG+ V   RGR GGVRL
Sbjct: 14 QQRERVPATELARRLEVSVRTVYRDVEALSAAGVPVYAERGRYGGVRL 61


>gi|228913337|ref|ZP_04076970.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228846246|gb|EEM91265.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 326

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|228925836|ref|ZP_04088920.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228833851|gb|EEM79404.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 327

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 75


>gi|228944400|ref|ZP_04106773.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228815302|gb|EEM61550.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 326

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|229089710|ref|ZP_04220971.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-42]
 gi|228693609|gb|EEL47311.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-42]
          Length = 326

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|229120298|ref|ZP_04249548.1| Transcriptional regulator, DeoR [Bacillus cereus 95/8201]
 gi|228663108|gb|EEL18698.1| Transcriptional regulator, DeoR [Bacillus cereus 95/8201]
          Length = 326

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|229182982|ref|ZP_04310214.1| Transcriptional regulator, DeoR [Bacillus cereus BGSC 6E1]
 gi|228600439|gb|EEK58027.1| Transcriptional regulator, DeoR [Bacillus cereus BGSC 6E1]
          Length = 327

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 35 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 75


>gi|226363627|ref|YP_002781409.1| ArsR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226242116|dbj|BAH52464.1| putative ArsR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 103

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCR 68
          R+L   A   D P     +A    +S   + + LQ L +AG+V    + R R     L  
Sbjct: 17 RLLEILA---DGPLTAGDLAGRFDLSRPAVAEHLQVLRRAGLVRDEPSGRQRH--YHLTA 71

Query: 69 PADQITILDV 78
                + DV
Sbjct: 72 EP----LADV 77


>gi|254477455|ref|ZP_05090841.1| phosphonates metabolism transcriptional regulator PhnF [Ruegeria
          sp. R11]
 gi|214031698|gb|EEB72533.1| phosphonates metabolism transcriptional regulator PhnF [Ruegeria
          sp. R11]
          Length = 240

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     +Q+A    ++   + + L  + + G++   RG   GV +        I   V+
Sbjct: 26 GDKLPSEAQLASRFGVNRHTVRRALAEMAEEGLLHARRGA--GVFVASRPTDYPIGKRVR 83


>gi|196047165|ref|ZP_03114382.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196022035|gb|EDX60725.1| conserved hypothetical protein [Bacillus cereus 03BB108]
          Length = 313

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|196035766|ref|ZP_03103169.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218901844|ref|YP_002449678.1| hypothetical protein BCAH820_0705 [Bacillus cereus AH820]
 gi|195991733|gb|EDX55698.1| conserved hypothetical protein [Bacillus cereus W]
 gi|218539384|gb|ACK91782.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 317

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|118476334|ref|YP_893485.1| DeoR family transcriptional regulator [Bacillus thuringiensis
          str. Al Hakam]
 gi|118415559|gb|ABK83978.1| transcriptional regulator, DeoR family [Bacillus thuringiensis
          str. Al Hakam]
          Length = 322

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|49476855|ref|YP_034906.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49328411|gb|AAT59057.1| conserved hypothetical protein, possible transcriptional
          regulator [Bacillus thuringiensis serovar konkukian
          str. 97-27]
          Length = 317

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|52144662|ref|YP_082165.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51978131|gb|AAU19681.1| conserved hypothetical protein; possible transcriptional
          regulator [Bacillus cereus E33L]
          Length = 317

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|30260802|ref|NP_843179.1| hypothetical protein BA_0648 [Bacillus anthracis str. Ames]
 gi|47777840|ref|YP_017276.2| hypothetical protein GBAA_0648 [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49183640|ref|YP_026892.1| hypothetical protein BAS0615 [Bacillus anthracis str. Sterne]
 gi|165872698|ref|ZP_02217327.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167635219|ref|ZP_02393535.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167640880|ref|ZP_02399138.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170689045|ref|ZP_02880245.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170708460|ref|ZP_02898902.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177652823|ref|ZP_02935196.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568555|ref|ZP_03021461.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227816482|ref|YP_002816491.1| hypothetical protein BAMEG_3939 [Bacillus anthracis str. CDC 684]
 gi|229602563|ref|YP_002865246.1| hypothetical protein BAA_0730 [Bacillus anthracis str. A0248]
 gi|254684275|ref|ZP_05148135.1| hypothetical protein BantC_10502 [Bacillus anthracis str.
          CNEVA-9066]
 gi|254722079|ref|ZP_05183868.1| hypothetical protein BantA1_06372 [Bacillus anthracis str. A1055]
 gi|254738740|ref|ZP_05196443.1| hypothetical protein BantWNA_26554 [Bacillus anthracis str.
          Western North America USA6153]
 gi|254742048|ref|ZP_05199735.1| hypothetical protein BantKB_13741 [Bacillus anthracis str. Kruger
          B]
 gi|254754965|ref|ZP_05206999.1| hypothetical protein BantV_21007 [Bacillus anthracis str. Vollum]
 gi|254762304|ref|ZP_05214148.1| hypothetical protein BantA9_27807 [Bacillus anthracis str.
          Australia 94]
 gi|30254251|gb|AAP24665.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47551545|gb|AAT29751.2| conserved hypothetical protein [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49177567|gb|AAT52943.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711559|gb|EDR17107.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167511100|gb|EDR86488.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167529478|gb|EDR92229.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170126581|gb|EDS95466.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170667030|gb|EDT17793.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172081857|gb|EDT66926.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560349|gb|EDV14328.1| conserved hypothetical protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|227006835|gb|ACP16578.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229266971|gb|ACQ48608.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 317

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 21 TAQEIADEFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 61


>gi|55378342|ref|YP_136192.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049]
 gi|62286605|sp|Q5V1W6|CDC63_HALMA RecName: Full=Cell division control protein 6 homolog 3; Short=CDC6
           homolog 3
 gi|55231067|gb|AAV46486.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049]
          Length = 403

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 28/105 (26%)

Query: 1   MH-LTKRTDYGIRVLMYCAIHNDYPNRISQ-------IAEACCISELFLFKI---LQPLV 49
           M  LTK     +  ++  A   + P RI         IAE   +  L   ++   L  L 
Sbjct: 292 MRELTKHGHLALVAMLQLAFEQETPARIRDVYPLYRRIAEGSNVDPLVRRRMHDHLADLA 351

Query: 50  KAGIVETV---RGRRGGVR--------LCRPADQITILDVVKATE 83
             GI+       GR GG          L      I + DVV+  +
Sbjct: 352 MLGILGRQMKNEGRAGGHYYQYEFDVGL-----DI-VGDVVRDFD 390


>gi|314928575|gb|EFS92406.1| oxidoreductase family, NAD-binding Rossmann fold protein
           [Propionibacterium acnes HL044PA1]
 gi|314970376|gb|EFT14474.1| oxidoreductase family, NAD-binding Rossmann fold protein
           [Propionibacterium acnes HL037PA3]
          Length = 818

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72
           +   +        + + EA  +S   +  IL  L  +G V  +RG    GG  L RPA  
Sbjct: 66  VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 121

Query: 73  ITI-LDV 78
            ++  DV
Sbjct: 122 WSLGGDV 128


>gi|297195234|ref|ZP_06912632.1| DeoR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|297152717|gb|EFH31958.1| DeoR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 343

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V    G  GG +L   A+
Sbjct: 32 SGADLADRLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 78


>gi|296165059|ref|ZP_06847613.1| ArsR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899591|gb|EFG79043.1| ArsR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 128

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69
           +R++   A H      +  +     +S+  +   L+ LV+AG++  T RG+    RL   
Sbjct: 53  LRLVSMIAGHEGAEACVCDLTATVGLSQPTVSHHLKILVEAGLLDRTQRGKWAYYRLVPA 112

Query: 70  ADQITILDVVKATEESFFVAEC 91
           A        + A     FV  C
Sbjct: 113 A--------LDAL-GGVFVVRC 125


>gi|289192118|ref|YP_003458059.1| phosphate uptake regulator, PhoU [Methanocaldococcus sp.
          FS406-22]
 gi|288938568|gb|ADC69323.1| phosphate uptake regulator, PhoU [Methanocaldococcus sp.
          FS406-22]
          Length = 281

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          IRV++      + P    +IAE   IS  ++ K+L+PL+   IV+
Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVK 52


>gi|256811270|ref|YP_003128639.1| phosphate uptake regulator, PhoU [Methanocaldococcus fervens
          AG86]
 gi|256794470|gb|ACV25139.1| phosphate uptake regulator, PhoU [Methanocaldococcus fervens
          AG86]
          Length = 281

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          IRV++      + P    +IAE   IS  ++ K+L+PL+   IV+
Sbjct: 13 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVK 52


>gi|228906397|ref|ZP_04070280.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200]
 gi|228853213|gb|EEM97987.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200]
          Length = 112

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA+   IS   + + +  L   G+ +   +GR GG +
Sbjct: 32 TAQEIADEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 72


>gi|229076878|ref|ZP_04209756.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-18]
 gi|228706273|gb|EEL58543.1| Transcriptional regulator, GntR [Bacillus cereus Rock4-18]
          Length = 126

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|297561055|ref|YP_003680029.1| hypothetical protein Ndas_2098 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296845503|gb|ADH67523.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 318

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++A+   +S   + + +  L + G  ++   G  GG +L 
Sbjct: 25 ELADRLQVSPRTVRRDVDRLRELGYPIQATMGTGGGYQLG 64


>gi|218764888|gb|ACL11813.1| putative transcriptional regulator [Mycobacterium brisbanense]
          Length = 278

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PAD 71
            +    +        S +++   +S   + + L  LV AG+V      + G R+ R   D
Sbjct: 75  AIRDLRLAPGTELSESALSQRFGVSRTPVREALAKLVDAGLVHVT--PQVGTRVARIRPD 132

Query: 72  QITILDVVK-ATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFD 120
            +     V+   E          + +  C      +  L  +L +   A+ D
Sbjct: 133 DVRQAQFVREHLE--------LGAFEAACARTDLSTERLHHLLDEQREAYDD 176


>gi|218289291|ref|ZP_03493526.1| transcriptional regulator, MarR family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240639|gb|EED07819.1| transcriptional regulator, MarR family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 112

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A   +       ++E   + +  L   ++ L + G+VE  R
Sbjct: 25 LRILKALA---EGEQTAGALSERLGVRQNTLSHHMRQLREHGLVEVRR 69


>gi|206901174|ref|YP_002250349.1| transcriptional regulator, GntR family [Dictyoglomus thermophilum
          H-6-12]
 gi|206740277|gb|ACI19335.1| transcriptional regulator, GntR family [Dictyoglomus thermophilum
          H-6-12]
          Length = 122

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++AE   ++   + K  Q L + GI  T+RG  
Sbjct: 31 GDKLPSVRELAEMLKVNPNTVQKAYQELEREGITYTLRGTG 71


>gi|254388331|ref|ZP_05003566.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294814322|ref|ZP_06772965.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197702053|gb|EDY47865.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294326921|gb|EFG08564.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 331

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L+  A    +P   +++A    +S   + + L  L  AG+V   R
Sbjct: 267 RALL-LAELT-HPASTTELARRLGLSAGGVSQHLTALRAAGLVSAHR 311


>gi|261406254|ref|YP_003242495.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261282717|gb|ACX64688.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10]
          Length = 305

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +R+L Y A   D P  +S++A         L   L  L  AG++ + 
Sbjct: 232 LRLLRYIA---DEPKAVSEMASELGQPYEQLMHHLMILRAAGLLRSH 275


>gi|239827690|ref|YP_002950314.1| manganese transport transcriptional regulator [Geobacillus sp.
          WCH70]
 gi|259495860|sp|C5D492|MNTR_GEOSW RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|239807983|gb|ACS25048.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          WCH70]
          Length = 142

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTAKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|148257014|ref|YP_001241599.1| GntR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409187|gb|ABQ37693.1| transcriptional regulator, GntR family [Bradyrhizobium sp. BTAi1]
          Length = 228

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 9  YG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y  +R  L+        P   +QIA A  +S   + + +  L   G+VE
Sbjct: 17 YADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVE 65


>gi|108758017|ref|YP_634671.1| ROK family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108461897|gb|ABF87082.1| transcriptional regulator, ROK family [Myxococcus xanthus DK
          1622]
          Length = 408

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---GGVR 65
           +     ++IA    +S   +  I+  L ++G+V ++ G     GG R
Sbjct: 29 RERQISRAEIARRTELSPSTVSAIVADLERSGLVRSI-GAGVSRGGRR 75


>gi|78045081|ref|YP_359689.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997196|gb|ABB16095.1| DNA repair protein RadA domain protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 547

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
                  +IAE        +  +L+ L + G+V +  GR     L    + I
Sbjct: 416 GGSASPKEIAEITERPHGSVKHLLRKLEEDGLVTSFNGR---YSLTTSLNDI 464


>gi|330011677|ref|ZP_08307144.1| transcriptional regulator, GntR family [Klebsiella sp. MS 92-3]
 gi|328534101|gb|EGF60739.1| transcriptional regulator, GntR family [Klebsiella sp. MS 92-3]
          Length = 475

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34  ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67  CRPADQITI 75
                 + +
Sbjct: 93  PERPADLPL 101


>gi|296129950|ref|YP_003637200.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM
           20109]
 gi|296021765|gb|ADG75001.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM
           20109]
          Length = 163

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           VL++ ++    P    ++A+AC ++E  + +++  L + G V             RP D+
Sbjct: 43  VLVHLSM---SPMSQRELADACGVTEQTMSRVVARLARTGYVS-----------RRPHDE 88

Query: 73  ITILDVVKATE-ESFFVAECFASHKID 98
                VV  TE  +  +A C       
Sbjct: 89  DRRRHVVAITESGASALAACADPTPAQ 115


>gi|262041465|ref|ZP_06014666.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041185|gb|EEW42255.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 475

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34  ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67  CRPADQITI 75
                 + +
Sbjct: 93  PERPADLPL 101


>gi|238893408|ref|YP_002918142.1| putative GntR-family transcriptional regulator [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545724|dbj|BAH62075.1| putative GntR-family transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 481

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 40  ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 98

Query: 67  CRPADQITI 75
                 + +
Sbjct: 99  PERPADLPL 107


>gi|229819143|ref|YP_002880669.1| IclR family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229565056|gb|ACQ78907.1| transcriptional regulator, IclR family [Beutenbergia cavernae DSM
          12333]
          Length = 259

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          G+ +L + A H      + +IA    IS    ++++  L   G + +     GGVRL 
Sbjct: 19 GLTILEFVAEHG--RVGVGEIAAELEISRSAAYRLVSQLRDRGFL-SEPSDGGGVRLG 73


>gi|256374422|ref|YP_003098082.1| AsnC family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255918725|gb|ACU34236.1| transcriptional regulator, AsnC family [Actinosynnema mirum DSM
          43827]
          Length = 149

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           L+  A+  D     +++A    +S   + + ++ L  AG++   R
Sbjct: 11 ALVD-ALQADARLSYNELARKVGVSPPTVAQRVRRLENAGVITGYR 55


>gi|172039640|ref|YP_001806141.1| hypothetical protein cce_4727 [Cyanothece sp. ATCC 51142]
 gi|171701094|gb|ACB54075.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 333

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
             Q+A    +    + K+ Q L +A +VE++ G  G     +  ++I++
Sbjct: 45 STRQLATMTGLHRNTISKVYQQLEEASLVESIAG-SGIYVKAQNNEEISL 93


>gi|152968994|ref|YP_001334103.1| GntR family transcriptional regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953843|gb|ABR75873.1| putative transcriptional regulator (GntR family) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 475

 Score = 35.3 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 10  GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34  ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67  CRPADQITI 75
                 + +
Sbjct: 93  PERPADLPL 101


>gi|330684496|gb|EGG96212.1| HTH domain protein [Staphylococcus epidermidis VCU121]
          Length = 232

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          I        S++A+   +S+  + + +  L   G+ +    G +GG ++     +I +
Sbjct: 14 IQQSNKITASELAKRFNVSKRTILRDIDDLENQGVQIHASHGSQGGYKIQDAQAKIAL 71


>gi|328957030|ref|YP_004374416.1| hypothetical protein CAR_c07060 [Carnobacterium sp. 17-4]
 gi|328673354|gb|AEB29400.1| hypothetical protein CAR_c07060 [Carnobacterium sp. 17-4]
          Length = 443

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ----ITILD 77
               +  IA+   +SE   ++ ++     G+V T++ R G +R+ R   +    +T  +
Sbjct: 18 GEKISVRSIAKNLNVSEGTAYRAIKDAQNDGLVSTIQ-RVGTIRIERKMKETFETLTYGE 76

Query: 78 VVKATEESF 86
          VVK  +   
Sbjct: 77 VVKIIDGDI 85


>gi|329116402|ref|ZP_08245119.1| trehalose operon repressor [Streptococcus parauberis NCFD 2020]
 gi|326906807|gb|EGE53721.1| trehalose operon repressor [Streptococcus parauberis NCFD 2020]
          Length = 244

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +    S   + K L  L KAG+V++ +GR 
Sbjct: 38 ELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRG 70


>gi|305663699|ref|YP_003859987.1| iron (metal) dependent repressor, DtxR family [Ignisphaera
          aggregans DSM 17230]
 gi|304378268|gb|ADM28107.1| iron (metal) dependent repressor, DtxR family [Ignisphaera
          aggregans DSM 17230]
          Length = 223

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIV 54
             R + IA+   +S   + K L+ L K G +
Sbjct: 27 GTVRTNDIAQELGVSPSTVSKTLRKLAKDGYI 58


>gi|303242402|ref|ZP_07328886.1| Helix-turn-helix type 11 domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302590080|gb|EFL59844.1| Helix-turn-helix type 11 domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 300

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              +++E   +S+  +++ +  L  AGI +   +G+ GG+ L
Sbjct: 19 VTAKELSEHFEVSQRTIYRDVDALSAAGIPIYANKGKGGGISL 61


>gi|283832216|ref|ZP_06351957.1| putative ARAC-type regulatory protein [Citrobacter youngae ATCC
           29220]
 gi|291071855|gb|EFE09964.1| putative ARAC-type regulatory protein [Citrobacter youngae ATCC
           29220]
          Length = 287

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            P     +A+   IS   L KI       G VE VR
Sbjct: 196 QPLSRENVAQFFNISPNHLSKIFTQHGTMGFVEYVR 231


>gi|229102059|ref|ZP_04232770.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-28]
 gi|229114900|ref|ZP_04244313.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-3]
 gi|228668592|gb|EEL24021.1| Transcriptional regulator, GntR [Bacillus cereus Rock1-3]
 gi|228681259|gb|EEL35425.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-28]
          Length = 126

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +  Q L + G+V T RG  
Sbjct: 31 GDKIPSVRELASELQVNPNTIQRTFQELERDGVVVTRRGMG 71


>gi|291288770|ref|YP_003505586.1| transcriptional regulator, IclR family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885930|gb|ADD69630.1| transcriptional regulator, IclR family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 263

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 6  RTDYGIRVL------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +++Y ++ +      +      D+   I+ I     ++   + K+L  L   G VE  R 
Sbjct: 5  KSEYAVQAVSNAIDILELLGEQDHEFSITDIVSDLNLTRSNVNKLLSTLELLGYVEHNR- 63

Query: 60 RRGGVRLCRPADQIT 74
            G  RL     QI+
Sbjct: 64 YTGNFRLGVKTFQIS 78


>gi|261855721|ref|YP_003263004.1| iron (metal) dependent repressor, DtxR family [Halothiobacillus
          neapolitanus c2]
 gi|261836190|gb|ACX95957.1| iron (metal) dependent repressor, DtxR family [Halothiobacillus
          neapolitanus c2]
          Length = 227

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 1  MHLT-KRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M  +    DY ++ +   A   +D     S IAE   I++  +  +L+ L   G++E  R
Sbjct: 1  MKTSIAYEDY-LKAIFKLAEQRSDSAASTSAIAERLNIAQASVTAMLKRLSHDGLIEYER 59

Query: 59 GRRGGVRLCRPADQITILDVVK 80
              G RL      I I D+++
Sbjct: 60 --YQGARLTSAGAAIAI-DMIR 78


>gi|167837174|ref|ZP_02464057.1| transcriptional regulator, IclR family protein [Burkholderia
          thailandensis MSMB43]
          Length = 270

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|104780995|ref|YP_607493.1| GntR family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95109982|emb|CAK14687.1| putative transcriptional regulator, GntR family [Pseudomonas
          entomophila L48]
          Length = 233

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL------CRPADQI---TILDV 78
           ++AE   IS   L + +  L   G+V ++ G+ G + L       +  + I   ++ DV
Sbjct: 34 RELAEQLGISRPSLREAVTVLETLGLVRSMPGK-GVLVLDADSAQAQEPEAIAAASLADV 92

Query: 79 VK 80
          ++
Sbjct: 93 LE 94


>gi|50955714|ref|YP_063002.1| IclR family transcriptional regulator [Leifsonia xyli subsp. xyli
          str. CTCB07]
 gi|50952196|gb|AAT89897.1| transcriptional regulator, IclR family [Leifsonia xyli subsp.
          xyli str. CTCB07]
          Length = 251

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +R+L + A     P   + IA A  +    ++ +L  L + G V
Sbjct: 11 LRILNHLAGQRG-PVPAASIAAALTLPRSTVYHLLTALGEHGFV 53


>gi|296268295|ref|YP_003650927.1| hypothetical protein Tbis_0303 [Thermobispora bispora DSM 43833]
 gi|296091082|gb|ADG87034.1| protein of unknown function DUF742 [Thermobispora bispora DSM
           43833]
          Length = 117

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L  C      P+ ++ +A    +S   L  +L  L   G++ +VR  +    + R  
Sbjct: 51  LRILRIC----RTPSTVADLASELGLSLNVLRILLSDLRDKGLI-SVR-PQA--TVARLP 102

Query: 71  DQITILDVVKAT 82
           D+  + +V++A 
Sbjct: 103 DERILREVIQAF 114


>gi|284039259|ref|YP_003389189.1| MarR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818552|gb|ADB40390.1| transcriptional regulator, MarR family [Spirosoma linguale DSM
          74]
          Length = 161

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           TD+ +  LM+ A   +     +++A+  C+++  + KI+  L   G + T +
Sbjct: 47 FTDFKMSYLMFLANIEEGGTTNNELAKRACVTKQMMSKIVGLLEAEGYIYTQK 99


>gi|256392480|ref|YP_003114044.1| GntR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358706|gb|ACU72203.1| transcriptional regulator, GntR family [Catenulispora acidiphila
           DSM 44928]
          Length = 250

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 6   RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           R+   +RV +      +       IAE   +SE+ + + L+ + + G+++  RGR GG
Sbjct: 46  RSRIALRVRLGVLASGERLPDTGVIAEELGMSEMTVRRALETMCQDGLLDRRRGRVGG 103


>gi|160940186|ref|ZP_02087531.1| hypothetical protein CLOBOL_05075 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436766|gb|EDP14533.1| hypothetical protein CLOBOL_05075 [Clostridium bolteae ATCC
           BAA-613]
          Length = 487

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A    +S   + K L  L + G V+T+ G+ 
Sbjct: 283 KQLAGQYNVSLSTVRKALSELEQRGFVKTLNGKG 316


>gi|78065748|ref|YP_368517.1| GntR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966493|gb|ABB07873.1| transcriptional regulator, GntR family [Burkholderia sp. 383]
          Length = 253

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70
              D     +++  A  +S   + + +  +  +G+VET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLVETRHGI-GSFVLELSRRQTLGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LAALRRALDAI 139


>gi|326442712|ref|ZP_08217446.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 328

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L+  A    +P   +++A    +S   + + L  L  AG+V   R
Sbjct: 264 RALL-LAELT-HPASTTELARRLGLSAGGVSQHLTALRAAGLVSAHR 308


>gi|206575907|ref|YP_002237281.1| transcriptional regulator, GntR family [Klebsiella pneumoniae
          342]
 gi|288934217|ref|YP_003438276.1| GntR family transcriptional regulator with [Klebsiella variicola
          At-22]
 gi|206564965|gb|ACI06741.1| transcriptional regulator, GntR family [Klebsiella pneumoniae
          342]
 gi|288888946|gb|ADC57264.1| transcriptional regulator, GntR family [Klebsiella variicola
          At-22]
          Length = 245

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   +S   L K L+ L + G++E   G  
Sbjct: 29 KELAELYDVSRNTLRKALKTLEEDGLIERRHGSG 62


>gi|114761158|ref|ZP_01441073.1| transcriptional regulator, GntR family protein [Pelagibaca
          bermudensis HTCC2601]
 gi|114545406|gb|EAU48408.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          HTCC2601]
          Length = 236

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          Q+AE   +S   L   L+ L + G+V + +G  
Sbjct: 31 QLAEEFGVSRPVLRTALERLREEGLVVSRQGAG 63


>gi|145296411|ref|YP_001139232.1| hypothetical protein cgR_2325 [Corynebacterium glutamicum R]
 gi|57158181|dbj|BAD84148.1| putative regulator [Corynebacterium glutamicum]
 gi|140846331|dbj|BAF55330.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 260

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
             +L   A       R+  +AE   IS   + +IL  L   G V+
Sbjct: 17 AATILETVASAGSEGIRLLDLAEDTGISRPTVHRILGDLRALGYVQ 62


>gi|330836038|ref|YP_004410679.1| transcriptional regulator, AraC family [Spirochaeta coccoides DSM
            17374]
 gi|329747941|gb|AEC01297.1| transcriptional regulator, AraC family [Spirochaeta coccoides DSM
            17374]
          Length = 1082

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 12   RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            R + Y   H        Q+AEA  +SE +L +I + 
Sbjct: 985  RAMAYLQAHAAEHVSRWQVAEAVNVSEDYLTRIFRR 1020


>gi|312144156|ref|YP_003995602.1| regulatory protein ArsR [Halanaerobium sp. 'sapolanicus']
 gi|311904807|gb|ADQ15248.1| regulatory protein ArsR [Halanaerobium sp. 'sapolanicus']
          Length = 111

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+ +   +  +    +S++ +   I +  L + L  L  AGI+++ R
Sbjct: 34 VRLTIVKGLLAEEGCNVSEMQQCLDIPQSTLSQHLAKLRDAGILKSER 81


>gi|301059313|ref|ZP_07200240.1| IclR helix-turn-helix domain protein [delta proteobacterium
          NaphS2]
 gi|300446542|gb|EFK10380.1| IclR helix-turn-helix domain protein [delta proteobacterium
          NaphS2]
          Length = 268

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A   +    +  I+E   I    L++I+  L + G V
Sbjct: 14 GLNVLELLAEQ-ESEMGLKTISERLNIPVPSLWRIMGVLKENGYV 57


>gi|282932547|ref|ZP_06337970.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1]
 gi|281303327|gb|EFA95506.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1]
          Length = 289

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 4   TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +K+  Y  +      ++ Y A H+     +S++A      + +L ++ Q L K   + 
Sbjct: 175 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 231


>gi|217965164|ref|YP_002350842.1| transcriptional regulator [Listeria monocytogenes HCC23]
 gi|217334434|gb|ACK40228.1| transcriptional regulator [Listeria monocytogenes HCC23]
 gi|307570276|emb|CAR83455.1| transcriptional regulator, GntR family [Listeria monocytogenes
          L99]
          Length = 125

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +    L +AGI+ TVRG  
Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGTG 69


>gi|217077650|ref|YP_002335368.1| HTH domain superfamily [Thermosipho africanus TCF52B]
 gi|217037505|gb|ACJ76027.1| HTH domain superfamily [Thermosipho africanus TCF52B]
          Length = 59

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
              P +  +IAE   +    + K++  L K G +E+
Sbjct: 12 KEGKPMKAGEIAEKLGVDSKVVSKLISELKKEGKIES 48


>gi|297195659|ref|ZP_06913057.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197718998|gb|EDY62906.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 121

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  IA+   +S+  +   L+ L +AG++ + R
Sbjct: 50 LRLFSKVASHPGGEACVCDIAD-VGVSQPTVSHHLKKLREAGLLTSER 96


>gi|11499892|ref|NP_071136.1| hypothetical protein AF2311 [Archaeoglobus fulgidus DSM 4304]
 gi|2648208|gb|AAB88945.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 49

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
              P R   IA+   +    + KI++ L K G+V +
Sbjct: 3  RAGKPVRPGDIAKETGLDSKEVSKIIKELRKEGLVHS 39


>gi|13472669|ref|NP_104236.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023416|dbj|BAB50022.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 281

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           R  +  A        +++IA    +S ++L +I Q 
Sbjct: 181 RAKLVLASDLSRRWTLAEIAAEVGVSPVYLTQIFQQ 216


>gi|93006609|ref|YP_581046.1| IclR family transcriptional regulator [Psychrobacter
          cryohalolentis K5]
 gi|92394287|gb|ABE75562.1| transcriptional regulator, IclR family [Psychrobacter
          cryohalolentis K5]
          Length = 272

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          RVL  +     +  P  +S +AEA  I    ++++L+ L   G V+
Sbjct: 29 RVLQIVEMLAKSQRPMSVSDLAEALDIPIPSMYRLLEQLQNLGFVQ 74


>gi|330719707|gb|EGG98245.1| Biotin-protein ligase / Biotin operon repressor [gamma
          proteobacterium IMCC2047]
          Length = 165

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
          + +   +   ++++   +S   ++K +  L + G+ +  V+G+  G RL    D +++  
Sbjct: 10 LSDGRFHSGEELSQGLGVSRTAIWKQISKLEQLGLQINAVKGK--GYRLADELDLLSLPS 67

Query: 78 VVK 80
          + +
Sbjct: 68 IYE 70


>gi|332285976|ref|YP_004417887.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429929|gb|AEC21263.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 227

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          LM  AI       I  IA    +S+  + + L  L + G+V 
Sbjct: 30 LMSLAIAPGARIPIDAIARELNVSQTPVREALSRLEREGLVH 71


>gi|315223274|ref|ZP_07865135.1| primase 1 [Streptococcus anginosus F0211]
 gi|315187706|gb|EFU21460.1| primase 1 [Streptococcus anginosus F0211]
          Length = 497

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRLC 67
                I E   I E  L K+L+ L K     ++   GR GG+R+ 
Sbjct: 393 TTKKAIREELSIPERSLDKVLKVLKKEQKIFLKVKSGRGGGIRIA 437


>gi|313679243|ref|YP_004056982.1| heat-inducible transcription repressor hrca [Oceanithermus
          profundus DSM 14977]
 gi|313151958|gb|ADR35809.1| heat-inducible transcription repressor HrcA [Oceanithermus
          profundus DSM 14977]
          Length = 310

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + +L    I    P     +AE   +S   +   L  L  AG++E
Sbjct: 9  LHLLTRAYIETGKPVPSRWLAERLGVSPATVRYDLADLEAAGLIE 53


>gi|309781432|ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
 gi|308919845|gb|EFP65506.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
          Length = 256

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          RVLM  A    +  P    ++ E   + +  L++ +  L + G V    G
Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71


>gi|296138499|ref|YP_003645742.1| hypothetical protein Tpau_0766 [Tsukamurella paurometabola DSM
          20162]
 gi|296026633|gb|ADG77403.1| Helix-turn-helix type 11 domain protein [Tsukamurella
          paurometabola DSM 20162]
          Length = 303

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
               +QIAE   +S   + + ++ L  AGI V T RGR GG+ L
Sbjct: 17 GTMTAAQIAEELEVSTRTVLRDVEALSTAGIPVYTDRGRGGGISL 61


>gi|163790780|ref|ZP_02185206.1| CBS domain protein [Carnobacterium sp. AT7]
 gi|159873960|gb|EDP68038.1| CBS domain protein [Carnobacterium sp. AT7]
          Length = 443

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ----ITILD 77
                +  IA+   +SE   ++ ++     G+V T++ R G +R+ R   +    +T  +
Sbjct: 18  GEKISVRSIAKNLSVSEGTAYRAIKEAQNNGLVSTIQ-RVGTIRIERKMKETFETLTYGE 76

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
           VVK  E             +D  L     +   + +  +A    +T  S+  +V NR ++
Sbjct: 77  VVKIIEGDIL----GGEEGLDKDLSKF--IIGAMTE--DAMIRYITPGSL-MIVGNRENV 127

Query: 138 KKI 140
           +K+
Sbjct: 128 QKL 130


>gi|241663977|ref|YP_002982337.1| IclR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866004|gb|ACS63665.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D]
          Length = 256

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          RVLM  A    +  P    ++ E   + +  L++ +  L + G V    G
Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAG 71


>gi|254252804|ref|ZP_04946122.1| regulatory protein GntR [Burkholderia dolosa AUO158]
 gi|124895413|gb|EAY69293.1| regulatory protein GntR [Burkholderia dolosa AUO158]
          Length = 283

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70
              D     +++  A  +S   + + +  +  +G++ET  G  G           L    
Sbjct: 65  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQPLGIDP 123

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 124 ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 169


>gi|194365492|ref|YP_002028102.1| ArsR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348296|gb|ACF51419.1| transcriptional regulator, ArsR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 221

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           + ++AE   +S     + LQ L +AG+V+T R   G   L R  D   + +++ A     
Sbjct: 41  VERLAELTGLSVANTSQHLQQLRRAGLVQTRR--DGKRILYRSGDG-PLGNLMAAL---- 93

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
                      D        +  V+  ++    D L   ++E L++ R ++
Sbjct: 94  ----------RDYADHQRSEMHDVIADSVLR-RDALDGLTVEQLLQQRDNV 133


>gi|86140214|ref|ZP_01058776.1| transcriptional regulator, AraC family protein [Roseobacter sp.
          MED193]
 gi|85823151|gb|EAQ43364.1| transcriptional regulator, AraC family protein [Roseobacter sp.
          MED193]
          Length = 277

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +RVL Y   +      + Q+AE   +S     ++   L      + VR     +RL R A
Sbjct: 10 LRVLDYIHDNPAGDLSLDQLAEVAAMSRFHWHRVFHALTGETCAQAVRR----IRLHRAA 65

Query: 71 DQI-----TILDV 78
            +     ++ ++
Sbjct: 66 SDLLMTQSSLGEI 78


>gi|110634652|ref|YP_674860.1| IclR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285636|gb|ABG63695.1| transcriptional regulator, IclR family [Chelativorans sp. BNC1]
          Length = 520

 Score = 35.3 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          G+R++   A   D     S++A    +    + ++L  L + G V    G RG  RL 
Sbjct: 22 GLRLIEALAAGGD-LVSPSELAGRVKLDRAVVRRLLMTLDRFGYVTA--GVRG-YRLA 75


>gi|330468849|ref|YP_004406592.1| regulatory protein arsr [Verrucosispora maris AB-18-032]
 gi|328811820|gb|AEB45992.1| regulatory protein arsr [Verrucosispora maris AB-18-032]
          Length = 112

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A     P  IS +AE   IS   + K ++ L +AG+V T +
Sbjct: 24 LARLGAAPATISDLAEPFAISLTGMKKHVRVLEEAGLVVTEK 65


>gi|326382886|ref|ZP_08204576.1| IclR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326198476|gb|EGD55660.1| IclR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 319

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R+L + A        ++ ++  C +S+     I+  L  AG V 
Sbjct: 27 VRILDFLASRPSEQFSLADLSRNCEVSKPTCLGIVSELCGAGYVT 71


>gi|307545993|ref|YP_003898472.1| GntR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218017|emb|CBV43287.1| transcriptional regulator, GntR family [Halomonas elongata DSM
           2581]
          Length = 244

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC------RPADQI---TILDV 78
           S++ +A  +S   + + +  L   G+VET RG  G   L       RPA  I   T+ D+
Sbjct: 45  SELCDAFGVSRTVIREAITHLKSLGLVETRRGV-GTTVLRTDVVEPRPAVHISPTTVEDI 103

Query: 79  VKATE 83
           ++  E
Sbjct: 104 LQVLE 108


>gi|300785123|ref|YP_003765414.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299794637|gb|ADJ45012.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 237

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
          +  L   A   + P+ + Q+A+A  ++   L   L  L  AG+V     GR    R+ R 
Sbjct: 28 LTALQVLAA--EGPHTMVQLADALGVTAPRLGNHLARLRAAGLVTVEHTGRHALYRVGRE 85


>gi|302554301|ref|ZP_07306643.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302471919|gb|EFL35012.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 325

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                ++AE   +S   +++ ++ L  AG+ V   RGR GG+ L
Sbjct: 17 GRVPARELAERLEVSVRTVYRDVESLSAAGVPVYAERGRHGGIEL 61


>gi|254511554|ref|ZP_05123621.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium KLH11]
 gi|221535265|gb|EEE38253.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium KLH11]
          Length = 243

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     S++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSESELADQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|213029568|ref|ZP_03344015.1| putative solute-binding protein [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 146

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 24 VTVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|195978006|ref|YP_002123250.1| transcriptional regulator GntR family [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|225868664|ref|YP_002744612.1| GntR family regulatory protein [Streptococcus equi subsp.
          zooepidemicus]
 gi|195974711|gb|ACG62237.1| transcriptional regulator GntR family [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|225701940|emb|CAW99468.1| GntR family regulatory protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 123

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +++          D    + + AE   ++   + + L  L + GIV + R
Sbjct: 18 HIMLQIVSQEIKSGDQLPTVREYAEIAGVNPNTMQRALTELEREGIVYSQR 68


>gi|167836515|ref|ZP_02463398.1| transcriptional regulator, IclR family protein [Burkholderia
          thailandensis MSMB43]
          Length = 248

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          VL   AI +D P    ++AE   I +  + +I   LV AG +
Sbjct: 3  VLRRIAI-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43


>gi|160901654|ref|YP_001567235.1| GntR family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359298|gb|ABX30912.1| transcriptional regulator, GntR family [Petrotoga mobilis SJ95]
          Length = 234

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           +AE   ++   + K+L  L + G +++ +GR  G +
Sbjct: 36 DLAEEFHVTRTTIRKVLSLLKQQGTIKSYQGR--GYK 70


>gi|118471555|ref|YP_885511.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118172842|gb|ABK73738.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 239

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +++   +S   L + ++ L + G+VE   GR GG
Sbjct: 42 RDLSQKLGVSRTTLRQAIRTLEERGVVEVRLGRGGG 77


>gi|114571380|ref|YP_758060.1| ArsR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114341842|gb|ABI67122.1| transcriptional regulator, ArsR family [Maricaulis maris MCS10]
          Length = 110

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                 P    ++A+   I    +   LQ L +AG++   R
Sbjct: 25 LCDQAPEPASAGELAQGFDIPPSTMTGHLQALERAGLIRAER 66


>gi|317486282|ref|ZP_07945114.1| HTH domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922452|gb|EFV43706.1| HTH domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 307

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
             ++AE C +S   + + L  L  AGI V + RG  GG+ L + 
Sbjct: 20 TAKELAEHCSVSVRTIQRDLDALSLAGIPVFSSRGYGGGIGLLKE 64


>gi|311104370|ref|YP_003977223.1| heat-inducible transcription repressor HrcA [Achromobacter
          xylosoxidans A8]
 gi|310759059|gb|ADP14508.1| heat-inducible transcription repressor HrcA [Achromobacter
          xylosoxidans A8]
          Length = 334

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 21/46 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++ L+   I +  P     +++   +S   +  ++  L + G++ +
Sbjct: 9  LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMSDLEELGLIHS 54


>gi|308450583|ref|XP_003088350.1| hypothetical protein CRE_18359 [Caenorhabditis remanei]
 gi|308247920|gb|EFO91872.1| hypothetical protein CRE_18359 [Caenorhabditis remanei]
          Length = 262

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+      I  ++     +     +  I E   +S+   ++ L+ LV A I++ + G 
Sbjct: 1   MALSSFGK--ILTVLDLFSVSRPVINVDVICEELGLSKPTSYRYLKELVSADILQRLNGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I ++D + + T+    +++ F     +      C L + L  
Sbjct: 59  SGDYTLGP---KIAVMDYISRTTDPLVQISKPFMQEISE--RTELCCLLTHLND 107


>gi|332652949|ref|ZP_08418694.1| transcriptional regulator, DeoR family [Ruminococcaceae bacterium
          D16]
 gi|332518095|gb|EGJ47698.1| transcriptional regulator, DeoR family [Ruminococcaceae bacterium
          D16]
          Length = 302

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
                ++AE   +S   + + ++ L +AGI + T +G  GG+
Sbjct: 17 EKVTAPELAEQFEVSRRTIQRDIESLCRAGIPISTAQGAGGGI 59


>gi|303328235|ref|ZP_07358673.1| transcriptional regulator, DeoR family [Desulfovibrio sp.
          3_1_syn3]
 gi|302861565|gb|EFL84501.1| transcriptional regulator, DeoR family [Desulfovibrio sp.
          3_1_syn3]
          Length = 303

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          N       ++AE C +S   + + L  L  AGI + + RG  GGV L + 
Sbjct: 15 NGSYTTAKELAEYCSVSVRTIQRDLDALSLAGIPICSSRGYGGGVGLLKE 64


>gi|291541653|emb|CBL14763.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Ruminococcus
          bromii L2-63]
          Length = 322

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          ++      D     S+I+E   +S   ++K +  L + G  +++V  R  G RL
Sbjct: 5  IIELLTKTDGYVSGSEISEQLGVSRQAVWKAINNLKEQGYKIDSVTNR--GYRL 56


>gi|290508420|ref|ZP_06547791.1| GntR family transcriptional regulator, glv operon transcriptional
          regulator [Klebsiella sp. 1_1_55]
 gi|289777814|gb|EFD85811.1| GntR family transcriptional regulator, glv operon transcriptional
          regulator [Klebsiella sp. 1_1_55]
          Length = 237

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   +S   L K L+ L + G++E   G  
Sbjct: 21 KELAELYDVSRNTLRKALKTLEEDGLIERRHGSG 54


>gi|323339640|ref|ZP_08079912.1| iron-dependent repressor [Lactobacillus ruminis ATCC 25644]
 gi|323092936|gb|EFZ35536.1| iron-dependent repressor [Lactobacillus ruminis ATCC 25644]
          Length = 215

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          K+ DY ++++              QIA +  I+   + +++  LVK G+V        G+
Sbjct: 4  KKEDY-LKIIFELGGRK-KKVSNKQIAMSLNIAAGSVTEMVSKLVKEGLVNHT--PYAGI 59

Query: 65 RLCRPADQI 73
           L +   +I
Sbjct: 60 SLTKKGTEI 68


>gi|218682765|ref|ZP_03530366.1| ArsR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 117

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H  +     ++A    + +  +   L  L +AG+V + R
Sbjct: 25 LVRHEPHGIPAGELARLIDVPQNTMSAHLATLSRAGLVTSER 66


>gi|148978698|ref|ZP_01815101.1| predicted DNA-binding transcriptional regulator of phosphonate
          uptake and biodegradation [Vibrionales bacterium
          SWAT-3]
 gi|145962236|gb|EDK27519.1| predicted DNA-binding transcriptional regulator of phosphonate
          uptake and biodegradation [Vibrionales bacterium
          SWAT-3]
          Length = 231

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
          +  DY    SQ+AE   ++   L + +  LV  G+++  +G+  G  + R   +  +
Sbjct: 20 VPGDYLPPESQLAERFSVNRHTLRRAVDELVSTGLIQRHQGK--GNMVIRQPSEYRL 74


>gi|57640769|ref|YP_183247.1| Lrp/AsnC family transcription regulator [Thermococcus
          kodakarensis KOD1]
 gi|57159093|dbj|BAD85023.1| transcription regulator, Lrp/AsnC family [Thermococcus
          kodakarensis KOD1]
          Length = 192

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          L+Y  + +D    IS++AE   +S   +   L+ L K G+++       G  +    +
Sbjct: 10 LIYL-LMDDARLSISELAERLGVSRPTVRARLEKLEKEGVIQ-------GYTIKLNPE 59


>gi|120554772|ref|YP_959123.1| CRP/FNR family transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120324621|gb|ABM18936.1| transcriptional regulator, Crp/Fnr family [Marinobacter aquaeolei
           VT8]
          Length = 250

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           P   S IA+A  +S + + ++ Q L   G+V +
Sbjct: 177 PLTQSLIADALGLSAVHVNRVFQELKDEGLVSS 209


>gi|328881425|emb|CCA54664.1| Transcriptional regulator, DeoR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 328

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V    G  GG +L   A+
Sbjct: 22 SGADLADRLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 68


>gi|297198000|ref|ZP_06915397.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|297146960|gb|EDY59031.2| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 265

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  I V+   A   +      ++A    + +   F++L  L   G+VE   G RG  
Sbjct: 19 QSVDRAIHVMEILAQRGEAGVS--EVAAEIDVHKSTAFRLLGALEARGLVE-QAGERGKY 75

Query: 65 RLC 67
          RL 
Sbjct: 76 RLG 78


>gi|290476854|ref|YP_003469765.1| transcriptional regulator, ArsR family/rhodanese-like domain
           protein [Xenorhabdus bovienii SS-2004]
 gi|289176198|emb|CBJ83003.1| Transcriptional regulator, ArsR family/rhodanese-like domain
           protein [Xenorhabdus bovienii SS-2004]
          Length = 227

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVVKA 81
           + + +  +AE   +S     + LQ L +AG V+T R G+    R+        + +++ A
Sbjct: 36  HESSVEHLAEISGLSITNTSQHLQQLRRAGFVQTRREGKHVLYRIGDGP----VANILAA 91

Query: 82  TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
             +           + +   V S  +            + L   SIE L+R +  
Sbjct: 92  LRDYLA------YQQTEIQRVVSDSIHHP---------EHLEGVSIEELLRRQEE 131


>gi|255319731|ref|ZP_05360939.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262379988|ref|ZP_06073143.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255303260|gb|EET82469.1| putative transcriptional regulator [Acinetobacter radioresistens
           SK82]
 gi|262298182|gb|EEY86096.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 256

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M L+      I  ++     +     +  I E   +S+   ++ L+ LV + I++ + G 
Sbjct: 1   MALSSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSSDILQRISGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD + + T+     +  F S   +      C L + L +
Sbjct: 59  SGDYTLG---SKIAVLDYISRTTDPVVQASSPFMSEIAE--RTELCCLLTHLNQ 107


>gi|284028518|ref|YP_003378449.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283807811|gb|ADB29650.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 323

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          + L+   +  + P     ++     +++    + +  L +AGI +E+  GR GG  L R
Sbjct: 14 KALLALELIQNVPGITGDRLGRRLGVTDRAARRYVGILREAGIPIESTPGRYGGYTLGR 72


>gi|225403114|ref|ZP_03760411.1| hypothetical protein CLOSTASPAR_04442 [Clostridium asparagiforme
           DSM 15981]
 gi|225043251|gb|EEG53497.1| hypothetical protein CLOSTASPAR_04442 [Clostridium asparagiforme
           DSM 15981]
          Length = 429

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           R + Y  +H   P  + QIAE   +S  +L +    
Sbjct: 330 RAVTYIRLHLAEPLTLKQIAEGIRVSPSYLSRTFNR 365


>gi|261407734|ref|YP_003243975.1| ROK family protein [Paenibacillus sp. Y412MC10]
 gi|261284197|gb|ACX66168.1| ROK family protein [Paenibacillus sp. Y412MC10]
          Length = 386

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73
          I N+ P   + IA+   +S   + +I+  L + G V     +   GR       R +  I
Sbjct: 21 IKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74

Query: 74 TILD 77
           +LD
Sbjct: 75 RLLD 78


>gi|183980844|ref|YP_001849135.1| GntR family transcriptional regulator [Mycobacterium marinum M]
 gi|183174170|gb|ACC39280.1| transcriptional regulatory protein (probably GntR-family)
          [Mycobacterium marinum M]
          Length = 245

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
           ++AE   ++   L + L  L + G++ET +G      + R    +T   VV+A 
Sbjct: 42 RELAEQLGVNRTSLRQGLARLQQMGLIETRQGSG---NVVRDPQSLTHPAVVEAL 93


>gi|159046368|ref|YP_001542039.1| PaaX family transcriptional regulator [Dinoroseobacter shibae DFL
          12]
 gi|157914127|gb|ABV95558.1| transcriptional regulator PaaX [Dinoroseobacter shibae DFL 12]
          Length = 264

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 16 YCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
            A   D       + QI+    I    +   L  L K G +++ R GR     L 
Sbjct: 31 DLAQAPDARISAALLRQISAQIGIRPEAMRVALHRLRKDGWIDSARAGRTSAYFLT 86


>gi|118619656|ref|YP_907988.1| GntR family transcriptional regulator [Mycobacterium ulcerans
          Agy99]
 gi|118571766|gb|ABL06517.1| transcriptional regulatory protein (probably GntR-family)
          [Mycobacterium ulcerans Agy99]
          Length = 245

 Score = 35.3 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
           ++AE   ++   L + L  L + G++ET +G      + R    +T   VV+A 
Sbjct: 42 RELAEQLGVNRTSLRQGLARLQQMGLIETRQGSG---NVVRDPQSLTHPAVVEAL 93


>gi|260425307|ref|ZP_05779287.1| transcriptional regulator, Crp/Fnr family [Citreicella sp. SE45]
 gi|260423247|gb|EEX16497.1| transcriptional regulator, Crp/Fnr family [Citreicella sp. SE45]
          Length = 242

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 13  VLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            L+     + Y   ++Q  +A+A  +S + + ++L+ L +AG+V    G  G
Sbjct: 165 ALVGLGSKDGYACPLTQYLLADALGLSAVHVNRVLRQLREAGMVTFRDGFVG 216


>gi|297562967|ref|YP_003681941.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296847415|gb|ADH69435.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 260

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           A + D P  +  ++E   I    L+ ++Q LV  G V +
Sbjct: 26 LARYRD-PVTLRTLSEEMGIPRSSLYALVQTLVNRGWVRS 64


>gi|182437899|ref|YP_001825618.1| ArsR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466415|dbj|BAG20935.1| putative ArsR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 372

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P    ++A++  I+   + + L  L KAG+V T R  RG   L
Sbjct: 310 SPYTTGELADSNGITSPEVSRHLSVLKKAGLVTTRR--RGRYVL 351


>gi|209550993|ref|YP_002282910.1| AraC family transcriptional regulator [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209536749|gb|ACI56684.1| transcriptional regulator, AraC family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 279

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69
          R + +   H +    + +I+EA  +S   L ++       G+V   ++ G   G RL R 
Sbjct: 6  RAIWFIESHFESDLSLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59


>gi|311743090|ref|ZP_07716898.1| transcriptional regulator [Aeromicrobium marinum DSM 15272]
 gi|311313770|gb|EFQ83679.1| transcriptional regulator [Aeromicrobium marinum DSM 15272]
          Length = 169

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +L+  +  + +  R++++A+A   S   +   +  L +AG V  VRG
Sbjct: 61  ILVRLSEADGWSIRMAELADAVGYSRSRVTHTVARLERAGWV--VRG 105


>gi|311106034|ref|YP_003978887.1| transcriptional regulator family protein 15 [Achromobacter
          xylosoxidans A8]
 gi|310760723|gb|ADP16172.1| bacterial transcriptional regulator family protein 15
          [Achromobacter xylosoxidans A8]
          Length = 248

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          RVL   A    +D P  I+ +AE   +++  L++ +  L + G V    G  G
Sbjct: 14 RVLYVLATLARHDGPLSIAALAEQTGLAQSTLYRQVALLKRWGFVAEHDGEYG 66


>gi|259418984|ref|ZP_05742901.1| Helix-turn-helix domain containing protein, type 11 [Silicibacter
          sp. TrichCH4B]
 gi|259345206|gb|EEW57060.1| Helix-turn-helix domain containing protein, type 11 [Silicibacter
          sp. TrichCH4B]
          Length = 239

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66
          +       ++ +A+    S   + + L  L   G V  +  GR GG++L
Sbjct: 14 LRRTGATTVADLAQEVGASRRTILRDLNSLRDEGFVIHSEPGRGGGLQL 62


>gi|251787929|ref|YP_003002650.1| AraC family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536550|gb|ACT05171.1| transcriptional regulator, AraC family [Dickeya zeae Ech1591]
          Length = 401

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           I+ L+Y   H      + ++AE   IS   L  +L+
Sbjct: 291 IKALLYLGEHFQREVTLIELAENSHISPSHLSYLLK 326


>gi|167462504|ref|ZP_02327593.1| transcriptional regulator, MarR family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
 gi|322383827|ref|ZP_08057574.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321151643|gb|EFX44716.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 153

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          AIH+  P  ++ ++ A  I    + K +  L K G V+ V G+       +   +I + D
Sbjct: 40 AIHDLGPTTVTNLSNALIIKPPTVTKTINRLEKLGYVKRVAGKN------KKEREIALTD 93

Query: 78 VVK 80
          + +
Sbjct: 94 LSR 96


>gi|156935001|ref|YP_001438917.1| hypothetical protein ESA_02852 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156533255|gb|ABU78081.1| hypothetical protein ESA_02852 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 576

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
            IS++A  C  SE  +  +L+ L + G +    ++ RG+RG
Sbjct: 24 VTISELAVRCFCSERHMRTLLRQLEQHGWLRWRAQSGRGKRG 65


>gi|119897461|ref|YP_932674.1| L-lactate dehydrogenase operon regulatory protein [Azoarcus sp.
          BH72]
 gi|119669874|emb|CAL93787.1| probable L-lactate dehydrogenase operon regulatory protein
          [Azoarcus sp. BH72]
          Length = 260

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R+L       D      ++A    +S   L + +Q LV  G++ + +G  
Sbjct: 22 RILDGVLKPGDRLQPERELAAELGVSRPSLREAIQKLVSKGLLHSRQGGG 71


>gi|108758048|ref|YP_633780.1| YihY family protein [Myxococcus xanthus DK 1622]
 gi|108461928|gb|ABF87113.1| YihY family protein [Myxococcus xanthus DK 1622]
          Length = 461

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 17  CAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
            A  +  P     ++A    + E  + +++  +V A ++E  R R+GG+R  +    +T+
Sbjct: 326 LAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVTAELLE--RLRKGGLRPAKDPAVLTL 383

Query: 76  LDVVKATEE 84
            D   A   
Sbjct: 384 ADTTLAVHG 392


>gi|83720359|ref|YP_442399.1| IclR family transcriptional regulator [Burkholderia thailandensis
          E264]
 gi|167581320|ref|ZP_02374194.1| transcriptional regulator, IclR family protein [Burkholderia
          thailandensis TXDOH]
 gi|167619402|ref|ZP_02388033.1| transcriptional regulator, IclR family protein [Burkholderia
          thailandensis Bt4]
 gi|257138601|ref|ZP_05586863.1| IclR family transcriptional regulator [Burkholderia thailandensis
          E264]
 gi|83654184|gb|ABC38247.1| transcriptional regulator, IclR family [Burkholderia
          thailandensis E264]
          Length = 270

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|304405516|ref|ZP_07387175.1| transcriptional regulator, ArsR family [Paenibacillus
          curdlanolyticus YK9]
 gi|304345555|gb|EFM11390.1| transcriptional regulator, ArsR family [Paenibacillus
          curdlanolyticus YK9]
          Length = 117

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          D P  + +IA+   +++  + K L+ L  AG+VE
Sbjct: 22 DGPLPVGEIADRLELNQPQVSKHLRVLTSAGLVE 55


>gi|326778535|ref|ZP_08237800.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
 gi|326658868|gb|EGE43714.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
          Length = 370

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
            P    ++A++  I+   + + L  L KAG+V T R  RG   L
Sbjct: 308 SPYTTGELADSNGITSPEVSRHLSVLKKAGLVTTRR--RGRYVL 349


>gi|296159029|ref|ZP_06841856.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1]
 gi|295890590|gb|EFG70381.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1]
          Length = 233

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          ++          IAE   +S   + + L+ L K G+V+   GR     L  P +   + D
Sbjct: 30 SLAPGTRLTQEDIAEQLSVSRSPVLQALRLLKKDGLVQDAPGRG---LLVAPLEASALAD 86

Query: 78 VVKA 81
          + + 
Sbjct: 87 LYEI 90


>gi|293399760|ref|ZP_06643906.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
 gi|291306160|gb|EFE47403.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
          Length = 124

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ND    +  +A    ++   + K  Q L   G + TV+G+ 
Sbjct: 33 NDKLPSVRSLASQLGVNPNTVAKAYQELETQGYIYTVKGKG 73


>gi|284041813|ref|YP_003392153.1| GntR family transcriptional regulator with aminotransferase
          domain [Conexibacter woesei DSM 14684]
 gi|283946034|gb|ADB48778.1| transcriptional regulator, GntR family with aminotransferase
          domain [Conexibacter woesei DSM 14684]
          Length = 482

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +      ++ E   +S + + + +  LV  G+V +  G  
Sbjct: 24 GEKLPSSRELTERHHVSPVTVSRAIAALVAEGLVVSRPGAG 64


>gi|260427481|ref|ZP_05781460.1| ROK domain protein [Citreicella sp. SE45]
 gi|260421973|gb|EEX15224.1| ROK domain protein [Citreicella sp. SE45]
          Length = 390

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 23/92 (25%)

Query: 10  GIRV----LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRG 62
           G+R     L+   +        ++IA+   +S   +  IL+ L   G +      RGR G
Sbjct: 17  GVRAHNERLILSLVRRGGGLPGAEIAKLTALSPQTVSNILRKLENDGFLRRGAPQRGRVG 76

Query: 63  ----------------GVRLCRPADQITILDV 78
                           G++L R +  + +LD+
Sbjct: 77  KPSIPMQIDPDGALSFGMKLGRRSADLAVLDL 108


>gi|257869831|ref|ZP_05649484.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257803995|gb|EEV32817.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 253

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +L Y   H D      + +IA+    S   L ++ Q L  +G +E
Sbjct: 30 HILTYLVSHTDKIEGVPLRKIAQELYTSPATLVRLAQKLGFSGYLE 75


>gi|290894441|ref|ZP_06557401.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|290556002|gb|EFD89556.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
          Length = 125

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++A    ++   + +    L +AGI+ TVRG  
Sbjct: 29 GDKLLSVRELATKLEVNPTTIQRAYAELEEAGIIFTVRGTG 69


>gi|253826971|ref|ZP_04869856.1| putative transcriptional regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253510377|gb|EES89036.1| putative transcriptional regulator [Helicobacter canadensis MIT
           98-5491]
          Length = 189

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            QIA+    S   L ++L+   + G+++T +G+
Sbjct: 151 RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 183


>gi|255283824|ref|ZP_05348379.1| putative response regulator receiver domain protein [Bryantella
           formatexigens DSM 14469]
 gi|255265707|gb|EET58912.1| putative response regulator receiver domain protein [Bryantella
           formatexigens DSM 14469]
          Length = 538

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           Y A + D    +   A    IS  +L ++ +     G 
Sbjct: 440 YIASNIDKRLTLHDTALTFNISPNYLSQLFKKYRNVGF 477


>gi|224419256|ref|ZP_03657262.1| hypothetical protein HcanM9_08288 [Helicobacter canadensis MIT
           98-5491]
          Length = 145

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            QIA+    S   L ++L+   + G+++T +G+
Sbjct: 107 RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 139


>gi|146342145|ref|YP_001207193.1| putative GntR family transcriptional regulator [Bradyrhizobium
          sp. ORS278]
 gi|146194951|emb|CAL78976.1| putative transcriptional regulator, GntR Family [Bradyrhizobium
          sp. ORS278]
          Length = 228

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 9  YG-IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y  +R  L+        P   +QIA A  +S   + + +  L   G+VE
Sbjct: 17 YADLRAELVSLVRRPGEPISEAQIATAYGVSRTPVREAILKLSDEGLVE 65


>gi|83593957|ref|YP_427709.1| tRNA-processing RNAse BN [Rhodospirillum rubrum ATCC 11170]
 gi|123526051|sp|Q2RR23|Y2625_RHORT RecName: Full=UPF0761 membrane protein Rru_A2625
 gi|83576871|gb|ABC23422.1| tRNA-processing RNAse BN [Rhodospirillum rubrum ATCC 11170]
          Length = 440

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 2   HLTKRT--------DYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLV 49
            LT+             + +++  A               ++      +     +L+ L 
Sbjct: 300 RLTRAGQDERAARLRIAVEIMVAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLD 359

Query: 50  KAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
           KAG++  +R   G V   R   +IT+ +++ A 
Sbjct: 360 KAGLL--IRDEDGAVLPGRDPRRITLAEILHAL 390


>gi|53719905|ref|YP_108891.1| IclR regulatory protein [Burkholderia pseudomallei K96243]
 gi|76810367|ref|YP_334125.1| IclR regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126441885|ref|YP_001059632.1| IclR family transcriptional regulator [Burkholderia pseudomallei
          668]
 gi|126453545|ref|YP_001066914.1| IclR family transcriptional regulator [Burkholderia pseudomallei
          1106a]
 gi|134277854|ref|ZP_01764569.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          305]
 gi|167720360|ref|ZP_02403596.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei DM98]
 gi|167739352|ref|ZP_02412126.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei 14]
 gi|167816567|ref|ZP_02448247.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei 91]
 gi|167824962|ref|ZP_02456433.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei 9]
 gi|167846480|ref|ZP_02471988.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei B7210]
 gi|167895057|ref|ZP_02482459.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei 7894]
 gi|167903444|ref|ZP_02490649.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei NCTC 13177]
 gi|167911693|ref|ZP_02498784.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei 112]
 gi|167919693|ref|ZP_02506784.1| transcriptional regulator, IclR family protein [Burkholderia
          pseudomallei BCC215]
 gi|217421127|ref|ZP_03452632.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          576]
 gi|226195460|ref|ZP_03791048.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pakistan 9]
 gi|237813025|ref|YP_002897476.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          MSHR346]
 gi|242316507|ref|ZP_04815523.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106b]
 gi|254184360|ref|ZP_04890950.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1655]
 gi|254191394|ref|ZP_04897898.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254195932|ref|ZP_04902358.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          S13]
 gi|254258677|ref|ZP_04949731.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1710a]
 gi|254297023|ref|ZP_04964476.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          406e]
 gi|52210319|emb|CAH36298.1| IclR regulatory protein [Burkholderia pseudomallei K96243]
 gi|76579820|gb|ABA49295.1| IclR regulatory protein [Burkholderia pseudomallei 1710b]
 gi|126221378|gb|ABN84884.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          668]
 gi|126227187|gb|ABN90727.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106a]
 gi|134251504|gb|EBA51583.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          305]
 gi|157806870|gb|EDO84040.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          406e]
 gi|157939066|gb|EDO94736.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pasteur 52237]
 gi|169652677|gb|EDS85370.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          S13]
 gi|184214891|gb|EDU11934.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1655]
 gi|217396539|gb|EEC36556.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          576]
 gi|225932420|gb|EEH28419.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pakistan 9]
 gi|237504046|gb|ACQ96364.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          MSHR346]
 gi|242139746|gb|EES26148.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1106b]
 gi|254217366|gb|EET06750.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          1710a]
          Length = 270

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|298249646|ref|ZP_06973450.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297547650|gb|EFH81517.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 336

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L++  +         ++AE   +SE  L++ +  L  AG+ +    G RGG  L
Sbjct: 15 LLALVFL-LQRYPHLTARELAERLQVSERTLYRDINDLSLAGVPIYGEGGPRGGYTL 70


>gi|296814872|ref|XP_002847773.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238840798|gb|EEQ30460.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 750

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +++++     + YP RI   A++   S   + +I   L K G ++   G +
Sbjct: 491 RQALKIII----EDGYPLRIRDFAQSLHCSGNEVVQITDLLRKNGFLQATPGSK 540


>gi|224583984|ref|YP_002637782.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224468511|gb|ACN46341.1| putative regulatory protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
          Length = 228

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R +++C I    P    +I+    +S   + +    L + G+++ +R +RG        +
Sbjct: 23 RDIVHCLIPPGTPLSEKEISTRFNVSRQPVREAFIKLAENGLIQ-IRPQRGSYV-----N 76

Query: 72 QITILDVVKATEESFFVAECFASHKIDC 99
          +I++  V            CF    I+C
Sbjct: 77 KISLSQV---------QNGCFVRQAIEC 95


>gi|220919124|ref|YP_002494428.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219956978|gb|ACL67362.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 221

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             +QIAE   ++   +++ L  L  A + +   +GR GG  L R
Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLRAEQGRGGGYALDR 65


>gi|118588112|ref|ZP_01545522.1| hypothetical protein SIAM614_11063 [Stappia aggregata IAM 12614]
 gi|118439734|gb|EAV46365.1| hypothetical protein SIAM614_11063 [Stappia aggregata IAM 12614]
          Length = 317

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGGVR 65
           G+  +M   ++        +I+    + +  + ++L+ L   G +   R    GR  G+ 
Sbjct: 39  GVHAMMEIGLNPG--ITAKEISARLKLEKSTISRLLKSLEARGDIRQTRSDSDGRSFGLT 96

Query: 66  LCRPAD 71
           L     
Sbjct: 97  LTEAGK 102


>gi|15827363|ref|NP_301626.1| ArsR family transcriptional regulator [Mycobacterium leprae TN]
 gi|13092912|emb|CAC30335.1| putative ArsR-family transcriptional regulator [Mycobacterium
           leprae]
          Length = 140

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
           +R+ +   +       + ++ +A  I +  + + L+ L  AGIV   R GR    RL 
Sbjct: 64  VRIAIVLQLRESQRC-VHELVDALGIPQPLVSQHLKILKGAGIVAGERSGREMLYRLA 120


>gi|15669837|ref|NP_248651.1| repressor protein [Methanocaldococcus jannaschii DSM 2661]
 gi|42559941|sp|Q59035|Y1641_METJA RecName: Full=Uncharacterized protein MJ1641
 gi|1500541|gb|AAB99661.1| repressor protein [Methanocaldococcus jannaschii DSM 2661]
          Length = 287

 Score = 35.3 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          IRV++      + P    +IAE   IS  ++ K+L+PL+   IV 
Sbjct: 19 IRVII-----EEEPETQDEIAEKLGISRRYVAKLLKPLIDEKIVR 58


>gi|332285187|ref|YP_004417098.1| heat-inducible transcription repressor [Pusillimonas sp. T7-7]
 gi|330429140|gb|AEC20474.1| heat-inducible transcription repressor [Pusillimonas sp. T7-7]
          Length = 335

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG------GV 64
          ++ L+   I +  P     +++   +S   +  ++  L   G++ +     G      G 
Sbjct: 9  LKALIEKYIADGQPVGSRTLSKMFDLSPATIRNVMADLEDLGLIHSPHTSAGRIPTPKGY 68

Query: 65 RL 66
          RL
Sbjct: 69 RL 70


>gi|329113619|ref|ZP_08242398.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
          DM001]
 gi|326697065|gb|EGE48727.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum
          DM001]
          Length = 456

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       +A+   IS   + K    L + G+V +V+GR 
Sbjct: 38 GDRLPAHRDLADRLGISVGTVTKAYNVLERRGLVRSVKGRG 78


>gi|317404840|gb|EFV85213.1| ArsR family Transcriptional regulator [Achromobacter xylosoxidans
          C54]
          Length = 246

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLCRPA 70
          R  M C + +      +++A A  I         Q L + G+VE   +G+    RL    
Sbjct: 22 RARMLCVLLDGRARTATELAAAADIGASTASSHFQRLREQGLVEQAAQGKHRYYRLAN-- 79

Query: 71 DQITILDVVKATE 83
                +V +A E
Sbjct: 80 -----AEVARALE 87


>gi|311067742|ref|YP_003972665.1| hypothetical protein BATR1942_03900 [Bacillus atrophaeus 1942]
 gi|310868259|gb|ADP31734.1| hypothetical protein BATR1942_03900 [Bacillus atrophaeus 1942]
          Length = 278

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           P +  ++A+   +SE  + + L  L K G +   R   G
Sbjct: 56 KPLKAKEMADVFGVSEKTVRRWLDQLEKNGYIMVRRAPYG 95


>gi|302331698|gb|ADL21892.1| Putative MarR-family transcriptional regulator [Corynebacterium
          pseudotuberculosis 1002]
          Length = 153

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + ++   A  N  P RIS IA+A  I        L  L K GIVE +R
Sbjct: 38 LTIMTRLA--NTGPARISHIAQAEGIRMPTASNALHHLEKRGIVERIR 83


>gi|300724726|ref|YP_003714051.1| SOS response transcriptional repressor [Xenorhabdus nematophila
          ATCC 19061]
 gi|297631268|emb|CBJ91963.1| transcriptional repressor for SOS response (signal peptidase of
          LexA family) [Xenorhabdus nematophila ATCC 19061]
          Length = 205

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
              P   ++IA      S     + L+ L + G++E + G   G+RL R A+
Sbjct: 21 QTGMPPTRAEIAARLGFRSPNAAEEHLKALARKGVIEIISGASRGIRLLREAE 73


>gi|297561848|ref|YP_003680822.1| hypothetical protein Ndas_2906 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296846296|gb|ADH68316.1| Helix-turn-helix type 11 domain protein [Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 334

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++ E   +S   L + ++ L      VE   G  GG RL 
Sbjct: 41 SGAELTERLGVSARTLRRDVERLRGLDYQVEGTPGVAGGYRLA 83


>gi|293606701|ref|ZP_06689055.1| regulatory protein [Achromobacter piechaudii ATCC 43553]
 gi|292814914|gb|EFF74041.1| regulatory protein [Achromobacter piechaudii ATCC 43553]
          Length = 271

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
          ++AE   +S   + ++ Q LV +G +E  RG R   RL  P   +++   ++A
Sbjct: 46 ELAERTGLSAATVSRLTQTLVTSGFLEYERGARA-YRLAAPV--LSLGHAMRA 95


>gi|284032528|ref|YP_003382459.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283811821|gb|ADB33660.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 317

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++A    +S   L   ++ L   G  VE   G  GG RL 
Sbjct: 25 ELAGRLGVSTRTLRADVEKLRGLGYPVEARSGVAGGYRLG 64


>gi|167563364|ref|ZP_02356280.1| transcriptional regulator, IclR family protein [Burkholderia
          oklahomensis EO147]
 gi|167570534|ref|ZP_02363408.1| transcriptional regulator, IclR family protein [Burkholderia
          oklahomensis C6786]
          Length = 270

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|118463919|ref|YP_881044.1| GntR family transcriptional regulator [Mycobacterium avium 104]
 gi|118165206|gb|ABK66103.1| regulatory protein GntR, HTH [Mycobacterium avium 104]
          Length = 246

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ--------------I 73
           S++ E   +S   L +  + L    ++   RG RGG R+ RP  +              +
Sbjct: 38  SELMERFGVSRPTLREAFRVLESESLIVVQRGVRGGARVTRPRRETLARYAGLILEYEGV 97

Query: 74  TILDVVKA 81
           T+ DV  A
Sbjct: 98  TLKDVYDA 105


>gi|81330309|ref|YP_398701.1| replication protein [Enterococcus faecium]
 gi|80751071|dbj|BAE48143.1| replication protein [Enterococcus faecium]
          Length = 533

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRG 62
             +  I+E   I    L  IL+ L  A   I++T RGR G
Sbjct: 418 VSMGTISEETQIPVSTLKVILKELRTANTVILQTSRGRYG 457


>gi|145222120|ref|YP_001132798.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK]
 gi|145214606|gb|ABP44010.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK]
          Length = 302

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
           +++L + A        +S +A    +S+     I+  L +AG +  VR       RL   
Sbjct: 18  VQILDFLASRPTERYGVSDLARRVGLSKPTCLGIVTSLTEAGYL--VRDPADKTYRLG-- 73

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
              IT+    +A +ES  V+     H     L    G T+ L   ++       + ++  
Sbjct: 74  PSLITLGH--RA-QESMRVSPAARDHLR--RLSARYGATAALSAVVD------DRITLLD 122

Query: 130 LVR 132
           LV 
Sbjct: 123 LVA 125


>gi|118579093|ref|YP_900343.1| biotin--acetyl-CoA-carboxylase ligase [Pelobacter propionicus DSM
          2379]
 gi|118501803|gb|ABK98285.1| biotin--acetyl-CoA-carboxylase ligase [Pelobacter propionicus DSM
          2379]
          Length = 324

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71
           ++      D       I+    +S   ++K +  L KAG V E V  R  G +L    D
Sbjct: 6  AILRLFREQDGFVSGEMISRELHVSRTAIWKQINALRKAGYVIEAVPSR--GYQLLSAPD 63

Query: 72 QITILDVVKATE 83
           ++  ++    +
Sbjct: 64 LLSSAEIAVQLD 75


>gi|158315338|ref|YP_001507846.1| MarR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158110743|gb|ABW12940.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec]
          Length = 146

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
           R+ +  A+H   P  +S +A A  +++  + + L+ L +   V   R GR     L  PA
Sbjct: 64  RLAILLAVHYAGPISVSDLATAVGMNDAAVSQALRVLRQQNAVLAERDGRIIRYSLADPA 123


>gi|332366529|gb|EGJ44275.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK1059]
          Length = 311

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   +S   ++K ++ L K GI +E+V+ R  G RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGVSRTSIWKAIKKLEKEGIQIESVKNR--GYRLT 59


>gi|330967711|gb|EGH67971.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 171

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATVADVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|332716577|ref|YP_004444043.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3]
 gi|325063262|gb|ADY66952.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3]
          Length = 235

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A   D       ++A    +S   + + L+ L + G + + RG  
Sbjct: 28 AYKPDERLPTEHELAMEFEVSRPVVREALRRLREQGFIYSRRGSG 72


>gi|284167318|ref|YP_003405596.1| TrmB family transcriptional regulator [Haloterrigena turkmenica
          DSM 5511]
 gi|284016973|gb|ADB62923.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM
          5511]
          Length = 742

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +Y A+  +    +  ++EA  + +  ++ I++ L + G VE
Sbjct: 29 VYLALVQNGKQSMRDLSEASDVPKQRVYDIVEELREQGFVE 69


>gi|264678937|ref|YP_003278844.1| GntR family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262209450|gb|ACY33548.1| transcriptional regulator, GntR family [Comamonas testosteroni
          CNB-2]
          Length = 364

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  +AE+  +S   + +    L   G+V++ RG  
Sbjct: 61 SVRALAESAGVSRDTVVQAYDKLAAQGLVQSRRGSG 96


>gi|228964013|ref|ZP_04125143.1| hypothetical protein bthur0004_8730 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795665|gb|EEM43142.1| hypothetical protein bthur0004_8730 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 305

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     +IS++AE   + E  +      +  AGI +ET +GR GG  L 
Sbjct: 1  MIEL-LHAREKMKISELAELLEVKERMVRIYRDDIEMAGIKIETTKGRDGGYSLS 54


>gi|255532109|ref|YP_003092481.1| regulatory protein GntR [Pedobacter heparinus DSM 2366]
 gi|255345093|gb|ACU04419.1| regulatory protein GntR HTH [Pedobacter heparinus DSM 2366]
          Length = 228

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++AEA  +S   L + L  L   G+VET + R  G+ L RP
Sbjct: 46 ELAEALDVSRNVLREALSRLRMLGMVETKKKR--GMILSRP 84


>gi|269127849|ref|YP_003301219.1| Helix-turn-helix type 11 domain-containing protein
          [Thermomonospora curvata DSM 43183]
 gi|268312807|gb|ACY99181.1| Helix-turn-helix type 11 domain protein [Thermomonospora curvata
          DSM 43183]
          Length = 320

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                   ++A    +SE  +++ +  L +AG+ V   +GRRGG RL
Sbjct: 14 QARGTMTARELARELEVSERTVYRDVLALSEAGVPVYAEQGRRGGYRL 61


>gi|269925417|ref|YP_003322040.1| protein of unknown function DUF43 [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269789077|gb|ACZ41218.1| protein of unknown function DUF43 [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 386

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          IR+L   A     P    +++++  +    L  + + L   GI+E    R+GG+ L 
Sbjct: 27 IRLLQVVAARG--PISAKELSQSIGLPIPVLAAVRRELESRGILE----RKGGIVLT 77


>gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|21225106|ref|NP_630885.1| transcription regulator ArsR [Streptomyces coelicolor A3(2)]
 gi|6855369|emb|CAB71260.1| putative ArsR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
          Length = 113

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +++LM  A  +     + ++A+   +S   +   L+ L   G++E+ R
Sbjct: 38 LQLLMKLAERSGGEAAVHELAD-VGVSPATVSHHLKRLRCIGLIESRR 84


>gi|87309487|ref|ZP_01091622.1| putative transcriptional regulator [Blastopirellula marina DSM
          3645]
 gi|87287795|gb|EAQ79694.1| putative transcriptional regulator [Blastopirellula marina DSM
          3645]
          Length = 124

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          R ++     +  P  +  + EA  +S+  + K L  L K G+V +VR ++G  RL
Sbjct: 20 RQIIDLLAQSTRPQAVGDLVEALQLSQPTVSKHLAVLRKVGVV-SVR-KQGQHRL 72


>gi|120555963|ref|YP_960314.1| putative ribonuclease BN [Marinobacter aquaeolei VT8]
 gi|120325812|gb|ABM20127.1| tRNA-processing RNAse BN [Marinobacter aquaeolei VT8]
          Length = 451

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 13  VLMYCAIHN---DYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-- 66
            LM+          P    + + +   I      KI   L++AG++  + GR G  +L  
Sbjct: 322 ALMWMVAKPFSRGEPAPQQESLEQQLRIPGEVTRKISDKLIRAGLLN-LAGRDGD-QLVP 379

Query: 67  CRPADQITILDVVKAT 82
            R  D IT+  V++A 
Sbjct: 380 GRTLDLITVGSVLRAV 395


>gi|328908190|gb|EGG27949.1| oxidoreductase, NAD-binding domain protein [Propionibacterium sp.
          P08]
          Length = 766

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--GGVRLCRPADQ 72
          +   +        + + EA  +S   +  IL  L  +G V  +RG    GG  L RPA  
Sbjct: 14 VLLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWV--IRGASDPGG--LGRPATT 69

Query: 73 ITIL 76
           ++ 
Sbjct: 70 WSLG 73


>gi|327536351|gb|AEA95185.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          OG1RF]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSEEGIQLALWPQTPPLTITVLE 87


>gi|320450228|ref|YP_004202324.1| IclR family transcriptional regulator [Thermus scotoductus SA-01]
 gi|320150397|gb|ADW21775.1| transcriptional regulator, IclR family [Thermus scotoductus
          SA-01]
          Length = 260

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +S++A+A  I +     +L  L + G+++  RGR G  RL 
Sbjct: 24 VSEVAKALGIPKSSAHALLATLAQIGLLK--RGREGRYRLG 62


>gi|315146434|gb|EFT90450.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX4244]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|307288308|ref|ZP_07568304.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0109]
 gi|306500746|gb|EFM70067.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0109]
 gi|315163564|gb|EFU07581.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX1302]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|300786558|ref|YP_003766849.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796072|gb|ADJ46447.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 106

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +R+L+      D P     IAE   ++   L + L+ L +AG+V   R GR    RL   
Sbjct: 20 LRLLL------DGPMPAGSIAERFEMARPSLSEHLRVLREAGLVTEQRQGRHRVYRLDAA 73

Query: 70 ADQ 72
            +
Sbjct: 74 PLE 76


>gi|288871334|ref|ZP_06410116.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium hathewayi DSM
          13479]
 gi|288863858|gb|EFC96156.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium hathewayi DSM
          13479]
          Length = 328

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83
              ++ +   +S   ++K +  L + G  +E VR +  G RL    D IT  +++   E
Sbjct: 19 VSGQELCDRFGVSRTAVWKAIGQLKEEGFQIEAVRNK--GYRLLSSDDVITEAELMSCME 76

Query: 84 ESF 86
             
Sbjct: 77 GGL 79


>gi|282162661|ref|YP_003358131.1| Kor [Streptomyces sp. Y27]
 gi|281494404|gb|ADA71991.1| Kor [Streptomyces sp. Y27]
          Length = 252

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             DY          +      + ++AE    S+         L  +G+V   RGR G  
Sbjct: 16 TAGDYA---------YGARMPSVRELAERYETSQQTAAAAYAALEGSGMVRVGRGREGTT 66

Query: 65 RLCRPADQITIL 76
              P     + 
Sbjct: 67 VTAGPPADAHLG 78


>gi|265764938|ref|ZP_06093213.1| GntR family regulatory protein [Bacteroides sp. 2_1_16]
 gi|263254322|gb|EEZ25756.1| GntR family regulatory protein [Bacteroides sp. 2_1_16]
          Length = 326

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    I+Q+++A  +S   +FK    L + GI+++  G+ 
Sbjct: 31 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 71


>gi|257417345|ref|ZP_05594339.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          AR01/DG]
 gi|257159173|gb|EEU89133.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          ARO1/DG]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|257088392|ref|ZP_05582753.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis D6]
 gi|256996422|gb|EEU83724.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis D6]
 gi|315026465|gb|EFT38397.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX2137]
 gi|315167102|gb|EFU11119.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX1341]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|256960566|ref|ZP_05564737.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          Merz96]
 gi|293385236|ref|ZP_06631052.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          R712]
 gi|293389753|ref|ZP_06634197.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          S613]
 gi|312906586|ref|ZP_07765586.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          DAPTO 512]
 gi|312910953|ref|ZP_07769788.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          DAPTO 516]
 gi|256951062|gb|EEU67694.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          Merz96]
 gi|291077436|gb|EFE14800.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          R712]
 gi|291081000|gb|EFE17963.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          S613]
 gi|310627234|gb|EFQ10517.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          DAPTO 512]
 gi|311288821|gb|EFQ67377.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          DAPTO 516]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWSQTPPLTITVLE 87


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGI 53
           LT + +Y +  L +  +        + I E            I E+++  + + L  AG+
Sbjct: 150 LTAK-EYAV--LEHLVLRAGQVVSKADILEHVWDFAYSGDPNIVEVYVSTLRRKLG-AGL 205

Query: 54  VETVRGRRGGVRLCRP 69
           + TVRG   G  L RP
Sbjct: 206 IRTVRGA--GYLLERP 219


>gi|256618011|ref|ZP_05474857.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis ATCC
          4200]
 gi|256597538|gb|EEU16714.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis ATCC
          4200]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|255970579|ref|ZP_05421165.1| predicted protein [Enterococcus faecalis T1]
 gi|257420326|ref|ZP_05597316.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis X98]
 gi|307276534|ref|ZP_07557652.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX2134]
 gi|312953778|ref|ZP_07772607.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0102]
 gi|255961597|gb|EET94073.1| predicted protein [Enterococcus faecalis T1]
 gi|257162150|gb|EEU92110.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis X98]
 gi|306506644|gb|EFM75796.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX2134]
 gi|310628304|gb|EFQ11587.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0102]
 gi|315152713|gb|EFT96729.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0031]
 gi|315154662|gb|EFT98678.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0043]
 gi|315159659|gb|EFU03676.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0312]
 gi|323479157|gb|ADX78596.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis 62]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|300861651|ref|ZP_07107735.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TUSoD Ef11]
 gi|300849112|gb|EFK76865.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TUSoD Ef11]
 gi|315144218|gb|EFT88234.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX2141]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|299821658|ref|ZP_07053546.1| biotin--[acetyl-CoA-carboxylase] ligase [Listeria grayi DSM
          20601]
 gi|299817323|gb|EFI84559.1| biotin--[acetyl-CoA-carboxylase] ligase [Listeria grayi DSM
          20601]
          Length = 324

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70
          R+L     H +      +IA+    S   ++K ++ L   G ++E VR +  G RL   A
Sbjct: 6  RLLALFQAHENDFLSGQKIADHLNCSRTAIWKQMEQLRTEGFLIEAVRNK--GYRLRASA 63

Query: 71 DQIT 74
          +Q T
Sbjct: 64 EQYT 67


>gi|227517168|ref|ZP_03947217.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis TX0104]
 gi|227075391|gb|EEI13354.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis TX0104]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|224825331|ref|ZP_03698436.1| GntR domain protein [Lutiella nitroferrum 2002]
 gi|224602252|gb|EEG08430.1| GntR domain protein [Lutiella nitroferrum 2002]
          Length = 250

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLC 67
                D     + I     +S   + + +  L  AG+VET  G           G  R+ 
Sbjct: 36  LLKPGDKLPTEAAIMRELDVSRTVVREAISRLQAAGLVETRHGIGTFVLEPSGEGAFRI- 94

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            PA   TI DV+   E    +    A             L   +R+AL+AF   L Q
Sbjct: 95  DPATVTTIQDVLALLELRISLETEAAGLAAARRSDEQLQL---MRQALDAFLAALEQ 148


>gi|254472271|ref|ZP_05085671.1| nodulation protein nolr [Pseudovibrio sp. JE062]
 gi|211958554|gb|EEA93754.1| nodulation protein nolr [Pseudovibrio sp. JE062]
          Length = 105

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          LM           + ++AEA  +S+  L + L  +  + +V T R  +
Sbjct: 29 LMVLCRLVQSECTVGELAEAVNLSQSALSQHLAKMRASNLVSTRRSAQ 76


>gi|209808784|ref|YP_002274355.1| Rep protein [Enterococcus faecium]
 gi|257892076|ref|ZP_05671729.1| replication protein [Enterococcus faecium 1,231,410]
 gi|257894955|ref|ZP_05674608.1| replication protein [Enterococcus faecium 1,231,408]
 gi|260562529|ref|ZP_05833037.1| rep protein [Enterococcus faecium C68]
 gi|209528621|dbj|BAG74922.1| Rep protein [Enterococcus faecium]
 gi|257828436|gb|EEV55062.1| replication protein [Enterococcus faecium 1,231,410]
 gi|257831334|gb|EEV57941.1| replication protein [Enterococcus faecium 1,231,408]
 gi|260073039|gb|EEW61386.1| rep protein [Enterococcus faecium C68]
          Length = 533

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRG 62
             +  I+E   I    L  IL+ L  A   I+ T RGR G
Sbjct: 418 VSMGTISEETQIPVSTLKVILKELRTANTVILRTSRGRYG 457


>gi|196248289|ref|ZP_03146990.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16]
 gi|196212014|gb|EDY06772.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16]
          Length = 135

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          ++      +D    +  +A+   ++   + K  + L + G + +V G+ G     RP +
Sbjct: 24 IVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGK-GSFVASRPKE 81


>gi|163855233|ref|YP_001629531.1| IclR family transcriptional regulator [Bordetella petrii DSM
          12804]
 gi|163258961|emb|CAP41260.1| transcriptional regulator, IclR family [Bordetella petrii]
          Length = 283

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R+L   A H D P  + +++    +      +IL  LV    VE  R   G  +L  
Sbjct: 27 AMRLLDALAAHPD-PVTLKELSATTGLHASTAHRILNDLVVGRYVE--RVDNGLYQLGM 82


>gi|281357925|ref|ZP_06244410.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
 gi|281315583|gb|EFA99611.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
          Length = 261

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
             R + Y   + +    ++++A AC +S   L  + + 
Sbjct: 146 AARAMAYLEENYNRNISVAEVANACGVSPSHLHLLFRR 183


>gi|138895129|ref|YP_001125582.1| acetoin transport repressor [Geobacillus thermodenitrificans
          NG80-2]
 gi|134266642|gb|ABO66837.1| Acetoin transport repressor [Geobacillus thermodenitrificans
          NG80-2]
          Length = 141

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          ++      +D    +  +A+   ++   + K  + L + G + +V G+ G     RP +
Sbjct: 30 IVRELWQPHDQLPSVRAMAKQLMVNPNTIQKAYRELERDGWIYSVPGK-GSFVASRPKE 87


>gi|134098630|ref|YP_001104291.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291003682|ref|ZP_06561655.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133911253|emb|CAM01366.1| transcriptional regulator, GntR family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 279

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 13 VLMYCA---IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +L   A   +    P     ++A    +S L + + +  LV  G++  VRG+ 
Sbjct: 43 ILRELASGELLPGSPVPSERELATRYGVSRLTVREAVGQLVADGLLVRVRGKG 95


>gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|78066907|ref|YP_369676.1| IclR family transcriptional regulator [Burkholderia sp. 383]
 gi|77967652|gb|ABB09032.1| transcriptional regulator, IclR family [Burkholderia sp. 383]
          Length = 269

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|29377684|ref|NP_816838.1| BirA bifunctional protein [Enterococcus faecalis V583]
 gi|227555181|ref|ZP_03985228.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis HH22]
 gi|229547919|ref|ZP_04436644.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis ATCC 29200]
 gi|255974163|ref|ZP_05424749.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T2]
 gi|257080344|ref|ZP_05574705.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          E1Sol]
 gi|257083102|ref|ZP_05577463.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Fly1]
 gi|257091461|ref|ZP_05585822.1| predicted protein [Enterococcus faecalis CH188]
 gi|257418063|ref|ZP_05595057.1| predicted protein [Enterococcus faecalis T11]
 gi|307284745|ref|ZP_07564901.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0860]
 gi|312905541|ref|ZP_07764655.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0635]
 gi|29345152|gb|AAO82908.1| BirA bifunctional protein [Enterococcus faecalis V583]
 gi|227175699|gb|EEI56671.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis HH22]
 gi|229306940|gb|EEN72936.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus
          faecalis ATCC 29200]
 gi|255967035|gb|EET97657.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T2]
 gi|256988374|gb|EEU75676.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          E1Sol]
 gi|256991132|gb|EEU78434.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis Fly1]
 gi|257000273|gb|EEU86793.1| predicted protein [Enterococcus faecalis CH188]
 gi|257159891|gb|EEU89851.1| predicted protein [Enterococcus faecalis T11]
 gi|295114531|emb|CBL33168.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Enterococcus
          sp. 7L76]
 gi|306503004|gb|EFM72261.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0860]
 gi|310631270|gb|EFQ14553.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0635]
 gi|315150849|gb|EFT94865.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0012]
 gi|315161235|gb|EFU05252.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0645]
 gi|315171077|gb|EFU15094.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX1342]
 gi|315172938|gb|EFU16955.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX1346]
 gi|315574602|gb|EFU86793.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0309B]
 gi|315578498|gb|EFU90689.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0630]
 gi|315580830|gb|EFU93021.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0309A]
          Length = 330

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A+   +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQRLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|53711543|ref|YP_097535.1| FucR [Bacteroides fragilis YCH46]
 gi|60679805|ref|YP_209949.1| GntR family regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|253564396|ref|ZP_04841853.1| GntR family regulatory protein [Bacteroides sp. 3_2_5]
 gi|52214408|dbj|BAD47001.1| FucR [Bacteroides fragilis YCH46]
 gi|60491239|emb|CAH05987.1| putative GntR-family regulatory protein [Bacteroides fragilis
          NCTC 9343]
 gi|251948172|gb|EES88454.1| GntR family regulatory protein [Bacteroides sp. 3_2_5]
          Length = 326

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    I+Q+++A  +S   +FK    L + GI+++  G+ 
Sbjct: 31 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 71


>gi|84499373|ref|ZP_00997661.1| transcriptional regulator, GntR family protein [Oceanicola
          batsensis HTCC2597]
 gi|84392517|gb|EAQ04728.1| transcriptional regulator, GntR family protein [Oceanicola
          batsensis HTCC2597]
          Length = 250

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +  D     +Q++    ++   + + L+ L    +V + RG   GV + +      I   
Sbjct: 26 MPGDRLPTEAQLSARFGVNRHTVRRALRDLSDRDLVLSRRGA--GVFVTQRPTDYPIGTR 83

Query: 79 VK 80
          V+
Sbjct: 84 VR 85


>gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|331695134|ref|YP_004331373.1| Crp/Fnr family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949823|gb|AEA23520.1| transcriptional regulator, Crp/Fnr family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 245

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           R+L+  A+  + P     +A    +    L KIL+   +AG++E
Sbjct: 183 RLLLDEAVDGEVPLPQRTLAAMLGVQRPSLNKILKEFERAGLIE 226


>gi|320661215|gb|EFX28646.1| putative transporter subunit: periplasmic-binding component of
          ABC superfamily protein [Escherichia coli O55:H7 str.
          USDA 5905]
          Length = 566

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + K
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|331651383|ref|ZP_08352408.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli M718]
 gi|331051124|gb|EGI23176.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli M718]
          Length = 566

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + K
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|302391274|ref|YP_003827094.1| sigma54 specific transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
 gi|302203351|gb|ADL12029.1| putative sigma54 specific transcriptional regulator [Acetohalobium
           arabaticum DSM 5501]
          Length = 728

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 15  MYCAIHNDYPNRISQIAEACCI-----SELFLFKILQPLVKAGIVETVRGRRG 62
           +Y A   D      +IA+   I     S   +   L  L + G+V+  +GR+G
Sbjct: 660 LYLAKQLDENIGRREIAKNAEINNLYLSPQMVRSRLNKLEEHGLVDIGKGRQG 712


>gi|301022561|ref|ZP_07186433.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 69-1]
 gi|300397442|gb|EFJ80980.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 69-1]
          Length = 566

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + K
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|291281352|ref|YP_003498170.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O55:H7 str. CB9615]
 gi|290761225|gb|ADD55186.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O55:H7 str. CB9615]
          Length = 571

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + K
Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 88

Query: 81 ATE 83
          A E
Sbjct: 89 ALE 91


>gi|239981016|ref|ZP_04703540.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291452881|ref|ZP_06592271.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291355830|gb|EFE82732.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 230

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +H      + +IAE   +S   + + L  L   G++++V+ R  G R+     + ++ D 
Sbjct: 34 LHPGQEFTVKEIAEQYGVSATPVREALVDLSAQGLLDSVQHR--GFRV----HEFSVAD- 86

Query: 79 VKAT 82
           +A 
Sbjct: 87 YRAM 90


>gi|226349541|ref|YP_002776655.1| putative ArsR family transcriptional regulator [Rhodococcus
          opacus B4]
 gi|226245456|dbj|BAH55803.1| putative ArsR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 145

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
               ++ IA         + + L  L  A +V + R G R   RL
Sbjct: 46 GGERSVNDIAAIVGTPASTVSRHLAQLRAAHLVASRRIGTRRLYRL 91


>gi|222102666|ref|YP_002539705.1| transcriptional regulator ROK family [Agrobacterium vitis S4]
 gi|221739267|gb|ACM40000.1| transcriptional regulator ROK family [Agrobacterium vitis S4]
          Length = 412

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R ++  AIH   P   ++IA+   +++  + +I+  L+  G+V   R R+G
Sbjct: 16 RAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVMEARRRQG 66


>gi|196248736|ref|ZP_03147436.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16]
 gi|196211612|gb|EDY06371.1| transcriptional regulator, GntR family [Geobacillus sp. G11MC16]
          Length = 242

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 28 QPGEMIASERELAEMYDISRMTVRQAVNNLVNDGYLVRRRGKG 70


>gi|53803853|ref|YP_114295.1| heat-inducible transcription repressor HrcA [Methylococcus
          capsulatus str. Bath]
 gi|61213337|sp|Q607A3|HRCA_METCA RecName: Full=Heat-inducible transcription repressor hrcA
 gi|53757614|gb|AAU91905.1| heat-inducible transcription repressor HrcA [Methylococcus
          capsulatus str. Bath]
          Length = 350

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L++R    ++ L+   I    P     +A    +S   +  ++  L + G++ +     G
Sbjct: 7  LSERAQQLLKALVERYIGEGQPVGSRVLARDAGLSPATIRNVMADLEELGLITSPHTSAG 66

Query: 63 ------GVRL 66
                G RL
Sbjct: 67 RLPTVSGYRL 76


>gi|15800175|ref|NP_286187.1| hypothetical protein Z0552 [Escherichia coli O157:H7 EDL933]
 gi|15829753|ref|NP_308526.1| hypothetical protein ECs0499 [Escherichia coli O157:H7 str.
          Sakai]
 gi|168747879|ref|ZP_02772901.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4113]
 gi|168754550|ref|ZP_02779557.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4401]
 gi|168760400|ref|ZP_02785407.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4501]
 gi|168768400|ref|ZP_02793407.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4486]
 gi|168777141|ref|ZP_02802148.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4196]
 gi|168778938|ref|ZP_02803945.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4076]
 gi|168786296|ref|ZP_02811303.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC869]
 gi|168798009|ref|ZP_02823016.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC508]
 gi|195936009|ref|ZP_03081391.1| hypothetical protein EscherichcoliO157_06016 [Escherichia coli
          O157:H7 str. EC4024]
 gi|208809498|ref|ZP_03251835.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4206]
 gi|208815594|ref|ZP_03256773.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4045]
 gi|208823207|ref|ZP_03263525.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4042]
 gi|209398118|ref|YP_002269092.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4115]
 gi|217325797|ref|ZP_03441881.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. TW14588]
 gi|254791629|ref|YP_003076466.1| putative ABC transporter periplasmic-binding protein [Escherichia
          coli O157:H7 str. TW14359]
 gi|261223928|ref|ZP_05938209.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily protein [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261256358|ref|ZP_05948891.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily protein [Escherichia coli O157:H7 str.
          FRIK966]
 gi|12513307|gb|AAG54795.1|AE005223_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359956|dbj|BAB33922.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187767565|gb|EDU31409.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4196]
 gi|188017614|gb|EDU55736.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4113]
 gi|189002915|gb|EDU71901.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4076]
 gi|189358103|gb|EDU76522.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4401]
 gi|189362431|gb|EDU80850.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4486]
 gi|189369079|gb|EDU87495.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4501]
 gi|189373580|gb|EDU91996.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC869]
 gi|189379301|gb|EDU97717.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC508]
 gi|208729299|gb|EDZ78900.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4206]
 gi|208732242|gb|EDZ80930.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4045]
 gi|208737400|gb|EDZ85084.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4042]
 gi|209159518|gb|ACI36951.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. EC4115]
 gi|209778628|gb|ACI87626.1| hypothetical protein ECs0499 [Escherichia coli]
 gi|209778630|gb|ACI87627.1| hypothetical protein ECs0499 [Escherichia coli]
 gi|209778632|gb|ACI87628.1| hypothetical protein ECs0499 [Escherichia coli]
 gi|209778634|gb|ACI87629.1| hypothetical protein ECs0499 [Escherichia coli]
 gi|209778636|gb|ACI87630.1| hypothetical protein ECs0499 [Escherichia coli]
 gi|217322018|gb|EEC30442.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. TW14588]
 gi|254591029|gb|ACT70390.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli O157:H7 str. TW14359]
 gi|320192861|gb|EFW67501.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli O157:H7 str. EC1212]
 gi|320638440|gb|EFX08154.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. G5101]
 gi|320643821|gb|EFX12944.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H- str. 493-89]
 gi|320649172|gb|EFX17750.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H- str. H 2687]
 gi|320656065|gb|EFX23981.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320665191|gb|EFX32284.1| Bacterial extracellular solute-binding protein, family 5
          [Escherichia coli O157:H7 str. LSU-61]
 gi|326341209|gb|EGD65001.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli O157:H7 str. 1044]
 gi|326346016|gb|EGD69755.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli O157:H7 str. 1125]
          Length = 566

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + K
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEK 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|107028688|ref|YP_625783.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          AU 1054]
 gi|116690153|ref|YP_835776.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170733485|ref|YP_001765432.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|206560566|ref|YP_002231331.1| IclR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|254247778|ref|ZP_04941099.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184]
 gi|105897852|gb|ABF80810.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          AU 1054]
 gi|116648242|gb|ABK08883.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          HI2424]
 gi|124872554|gb|EAY64270.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184]
 gi|169816727|gb|ACA91310.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          MC0-3]
 gi|198036608|emb|CAR52505.1| IclR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 269

 Score = 35.3 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|317404976|gb|EFV85338.1| GntR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 267

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRR----------GGVRLCRPADQITILDV 78
           ++A    +S   + + L  L +  +VE++RG            GG+    PA    +  +
Sbjct: 69  ELAALFEVSRPVVRQALDRLREDQLVESMRGSGSYVRAKPDLMGGMSAVDPAR--RVGHI 126

Query: 79  VKATE 83
           ++  E
Sbjct: 127 LEGLE 131


>gi|314953413|ref|ZP_07856333.1| hypothetical protein HMPREF9523_02707 [Enterococcus faecium
          TX0133A]
 gi|313594554|gb|EFR73399.1| hypothetical protein HMPREF9523_02707 [Enterococcus faecium
          TX0133A]
          Length = 410

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
          M LT R +Y    LM    +         + E   IS  +L K+ + L  +
Sbjct: 6  MDLTNRFNY----LMLLINYPQTAVPKKYLLEQLYISPSYLEKLTKQLNHS 52


>gi|314939910|ref|ZP_07847114.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133a04]
 gi|314944131|ref|ZP_07850785.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133C]
 gi|314994119|ref|ZP_07859432.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133B]
 gi|314996100|ref|ZP_07861174.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133a01]
 gi|313589713|gb|EFR68558.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133a01]
 gi|313591455|gb|EFR70300.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133B]
 gi|313597289|gb|EFR76134.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133C]
 gi|313640838|gb|EFS05418.1| M protein trans-acting positive regulator [Enterococcus faecium
          TX0133a04]
          Length = 411

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
          M LT R +Y    LM    +         + E   IS  +L K+ + L  +
Sbjct: 7  MDLTNRFNY----LMLLINYPQTAVPKKYLLEQLYISPSYLEKLTKQLNHS 53


>gi|307324396|ref|ZP_07603604.1| transcriptional regulator, GntR family [Streptomyces
          violaceusniger Tu 4113]
 gi|306890127|gb|EFN21105.1| transcriptional regulator, GntR family [Streptomyces
          violaceusniger Tu 4113]
          Length = 258

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
              P    SQ+ E   +S   + K +  L   G++E + G+ G      PA  +TI
Sbjct: 28 KPGSPLPSESQLIERYKVSRPTVRKAIAALRAEGLIEVIHGK-GSYVRALPAPAVTI 83


>gi|299537256|ref|ZP_07050559.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298727497|gb|EFI68069.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 132

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +R+L       +    +  IA    IS     + ++ L + G V
Sbjct: 28 SVRILQMI--QKEAEVTVRDIAGLLNISPNTASEHVKKLERHGWV 70


>gi|296268336|ref|YP_003650968.1| ArsR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296091123|gb|ADG87075.1| transcriptional regulator, ArsR family [Thermobispora bispora DSM
          43833]
          Length = 127

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  +  A  ++   +   L+ L +AG++++ R
Sbjct: 50 LRLLSLIACHEAGETCVCDLTAAFDLTPPTISHHLRVLKQAGLIDSER 97


>gi|295112566|emb|CBL31203.1| Primase C terminal 1 (PriCT-1). [Enterococcus sp. 7L76]
          Length = 496

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 14  LMYCAIHNDY-----PNRISQIAEACCISELFLFKILQPLVKAG--IVETVRGRRGGVRL 66
           + Y +  +D           ++ E   I E  L K+L+ L        +   GR GG++L
Sbjct: 376 MAYISEKSDVYKPYLVTTKKELREVLGIPERTLDKLLKVLKANQEIFFKIKPGRNGGIQL 435

Query: 67  C 67
            
Sbjct: 436 A 436


>gi|218290162|ref|ZP_03494321.1| transcriptional regulator, DeoR family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239757|gb|EED06947.1| transcriptional regulator, DeoR family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 266

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          RVL+   A H        Q+AE   +SE+ + + ++ L   G+VET     GG ++ R +
Sbjct: 8  RVLLELLAQHG--FASYRQLAERLGVSEITVRRDMKALEAQGLVET---AFGGGQVARAS 62

Query: 71 DQ 72
           +
Sbjct: 63 RE 64


>gi|170701993|ref|ZP_02892913.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          IOP40-10]
 gi|171320026|ref|ZP_02909097.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MEX-5]
 gi|170133083|gb|EDT01491.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          IOP40-10]
 gi|171094719|gb|EDT39762.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MEX-5]
          Length = 269

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|94971572|ref|YP_593620.1| DeoR family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94553622|gb|ABF43546.1| transcriptional regulator, DeoR family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 314

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                 +AE   +SE  + + ++ L  +G+ V  VRG +GG +L
Sbjct: 17 GRMTGRDLAERLEVSERTVHRDMESLSASGVPVYAVRGAQGGWQL 61


>gi|83717843|ref|YP_439282.1| ArsR family transcriptional regulator [Burkholderia thailandensis
          E264]
 gi|167577681|ref|ZP_02370555.1| transcriptional regulator, ArsR family protein [Burkholderia
          thailandensis TXDOH]
 gi|167615806|ref|ZP_02384441.1| transcriptional regulator, ArsR family protein [Burkholderia
          thailandensis Bt4]
 gi|257142401|ref|ZP_05590663.1| ArsR family transcriptional regulator [Burkholderia thailandensis
          E264]
 gi|83651668|gb|ABC35732.1| transcriptional regulator, ArsR family [Burkholderia
          thailandensis E264]
          Length = 115

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R+LM C +       +S I     I +  L + L  L +  +VET R G+     L    
Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLGVLREHALVETRRDGKNIYYALASEP 91

Query: 71 D 71
           
Sbjct: 92 A 92


>gi|115352220|ref|YP_774059.1| IclR family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|172061087|ref|YP_001808739.1| IclR family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|115282208|gb|ABI87725.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          AMMD]
 gi|171993604|gb|ACB64523.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MC40-6]
          Length = 269

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|329936033|ref|ZP_08285833.1| Transcriptional regulator, ArsR family [Streptomyces
          griseoaurantiacus M045]
 gi|329304511|gb|EGG48389.1| Transcriptional regulator, ArsR family [Streptomyces
          griseoaurantiacus M045]
          Length = 117

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 41 LRLFSSVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 87


>gi|325964462|ref|YP_004242368.1| ArsR family transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323470549|gb|ADX74234.1| transcriptional regulator, ArsR family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 125

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 11 IRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          +R+L            ++ P  ++++  A  +    + + L  L  +G+V+T + GR 
Sbjct: 36 LRMLAEPTRLHLLWQLSEGPKTVTELTAAASVPRTVVSQHLAKLRLSGLVDTRKDGRH 93


>gi|318057810|ref|ZP_07976533.1| GntR family transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 287

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 10  GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67
            +R  +    +          + E   +S   + + +Q L   G VETV     G R L 
Sbjct: 100 ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 157

Query: 68  RPADQ-ITILDVVKATE 83
           R AD    + +V+   E
Sbjct: 158 RTADDAAALAEVLFLIE 174


>gi|315185461|gb|EFU19232.1| iron (metal) dependent repressor, DtxR family [Spirochaeta
          thermophila DSM 6578]
          Length = 156

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 1  MH---LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M    LT R  DY +  +   A       R+  IAEA  +S   +   L  L   G +E
Sbjct: 1  MRQEDLTSRMEDY-LEAIYVLA-KTKRVARVRDIAEALGVSRSTVSNTLHTLSDKGFIE 57


>gi|311105792|ref|YP_003978645.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760481|gb|ADP15930.1| bacterial regulatory protein, GntR family protein 27 [Achromobacter
           xylosoxidans A8]
          Length = 267

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK---ATEES 85
           ++A    +S   + + L  L +  +V+++RG  G     +P       D++    A + +
Sbjct: 69  ELAALFEVSRPVVRQALDRLREDQLVDSIRG-SGSYVRAKP-------DLMGGMPAVDPA 120

Query: 86  FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
             V       ++   +   C   + LR+      D
Sbjct: 121 RRVGHILEGLELRMVIEPECAYLAALRRTDEDLRD 155


>gi|302522661|ref|ZP_07275003.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78]
 gi|302431556|gb|EFL03372.1| GntR-family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 281

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 10  GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67
            +R  +    +          + E   +S   + + +Q L   G VETV     G R L 
Sbjct: 94  ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 151

Query: 68  RPADQ-ITILDVVKATE 83
           R AD    + +V+   E
Sbjct: 152 RTADDAAALAEVLFLIE 168


>gi|239977987|ref|ZP_04700511.1| MarR family transcriptional regulator [Streptomyces albus J1074]
 gi|291449894|ref|ZP_06589284.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291352843|gb|EFE79745.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 146

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV------RL 66
           VL +    ++    ++++A    ++   + + +  LV  G++ +  G   G       RL
Sbjct: 47  VLAHL--RHESALSVAELARRAGVTRQTMHRAVTQLVGEGLLTSEPGP--GFPRSTLIRL 102

Query: 67  CRPA---DQITILDVVKATEESF 86
                    I +  +++  EE  
Sbjct: 103 TEAGCRRRDIALG-ILRDLEEEL 124


>gi|256390536|ref|YP_003112100.1| hypothetical protein Caci_1336 [Catenulispora acidiphila DSM
          44928]
 gi|256356762|gb|ACU70259.1| Helix-turn-helix type 11 domain protein [Catenulispora acidiphila
          DSM 44928]
          Length = 314

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +      + +A    +S   + + LQ L +AG  +   RGR GGV L
Sbjct: 9  LLLTLQSRESTTTADLAAHVGVSVRTVIRDLQWLQEAGFPLLIRRGRWGGVSL 61


>gi|261364415|ref|ZP_05977298.1| transcriptional regulator, ArsR family [Neisseria mucosa ATCC
          25996]
 gi|288567318|gb|EFC88878.1| transcriptional regulator, ArsR family [Neisseria mucosa ATCC
          25996]
          Length = 100

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 23/43 (53%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
            L+     ++ P+ ++++AE+  + +  +   L  L +AG+V
Sbjct: 24 HRLVVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66


>gi|158334467|ref|YP_001515639.1| hypothetical protein AM1_1289 [Acaryochloris marina MBIC11017]
 gi|158304708|gb|ABW26325.1| hypothetical protein AM1_1289 [Acaryochloris marina MBIC11017]
          Length = 756

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-------VETVRGRRG 62
           R+L Y       P  ++++A   C S+  + ++++ L + G        VE   GR G
Sbjct: 601 RLLEYFQQSPGVPFEVAELATHFCSSQSHMRRLVKRLWRQGHITEEVREVEANNGRGG 658


>gi|134102558|ref|YP_001108219.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291007071|ref|ZP_06565044.1| GntR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133915181|emb|CAM05294.1| GntR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 111

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D       +A A  I+   + + L+ L   G++E  RGR 
Sbjct: 27 APGDRLPPARDLAAALQINANTVLRALRQLRDEGLLEFRRGRG 69


>gi|119720455|ref|YP_920950.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5]
 gi|119525575|gb|ABL78947.1| transcriptional regulator, TrmB [Thermofilum pendens Hrk 5]
          Length = 342

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +Y A+    P+ + ++++   +    L + L+ LV+ G+VE  RG+
Sbjct: 22 IYQALLKYGPSTLRELSDKVDMVGSQLHQYLKRLVRLGLVEVSRGK 67


>gi|30387203|ref|NP_848180.1| putative transcriptional regulator [Corynebacterium jeikeium]
 gi|30349357|gb|AAP22078.1| putative transcriptional regulator [Corynebacterium jeikeium]
          Length = 321

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
               +++AE   +S   + + ++ L  AG+ V   RGR GG+ L
Sbjct: 17 QRITTTELAERLEVSRRTVLRDVEALSTAGVPVYAERGRNGGIVL 61


>gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 219

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|158316161|ref|YP_001508669.1| ArsR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111566|gb|ABW13763.1| transcriptional regulator, ArsR family [Frankia sp. EAN1pec]
          Length = 113

 Score = 35.3 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL   A   D P  + ++  A  +    L + L  L ++GIV   R
Sbjct: 22 IRVLELLA---DGPMPVRELLAAIEVEPSNLSQQLAVLRRSGIVTATR 66


>gi|330466340|ref|YP_004404083.1| putative transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328809311|gb|AEB43483.1| putative transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 159

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RTD  +R L    + ND P    ++  A  IS      ++  L +AG+V   R
Sbjct: 36 RTD--LRAL-DLVLANDGPFSAGELTRALKISPAATTTVIDRLERAGLVARTR 85


>gi|325289926|ref|YP_004266107.1| transcriptional regulator, GntR family [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324965327|gb|ADY56106.1| transcriptional regulator, GntR family [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 119

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + + +E+  ++   + ++   L + GI  + RG  
Sbjct: 30 GDKMMSVREYSESLKVNPNTIQRVFLELEREGITYSQRGVG 70


>gi|301161325|emb|CBW20865.1| putative GntR-family regulatory protein [Bacteroides fragilis
          638R]
          Length = 329

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    I+Q+++A  +S   +FK    L + GI+++  G+ 
Sbjct: 34 GDSLPSINQLSQAYEVSRDTVFKAFLDLKERGIIDSTPGKG 74


>gi|297194784|ref|ZP_06912182.1| DeoR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|297152462|gb|EDY67323.2| DeoR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 321

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          M   + +      +++A    +SE  + +    L +AG+ V   RGR GG RL
Sbjct: 9  MVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYADRGRAGGYRL 61


>gi|256851060|ref|ZP_05556449.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260661272|ref|ZP_05862186.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
 gi|256616122|gb|EEU21310.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260548209|gb|EEX24185.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
          Length = 259

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 4   TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +K+  Y  +      ++ Y A H+     +S++A      + +L ++ Q L K   + 
Sbjct: 145 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 201


>gi|221196879|ref|ZP_03569926.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
 gi|221203549|ref|ZP_03576568.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221212538|ref|ZP_03585515.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
 gi|221167637|gb|EEE00107.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
 gi|221177483|gb|EEE09911.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221183433|gb|EEE15833.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
          Length = 289

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + VL   A +      ++ IA+   I      ++L  L+  G V   R   G   L 
Sbjct: 8  ALAVLELLAKNGGR-MSLATIADTLNIPRSGTHRLLSMLIDEGFVRQDR-EHGEYMLA 63


>gi|254389785|ref|ZP_05005009.1| differentiation regulon [Streptomyces clavuligerus ATCC 27064]
 gi|197703496|gb|EDY49308.1| differentiation regulon [Streptomyces clavuligerus ATCC 27064]
          Length = 218

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++  D G+RVL   A   D+   ++++++   ++   ++++L  L +  +V 
Sbjct: 19 SQTLDRGLRVLKLLA-DTDHGLTVTELSQRLGVNRTVVYRLLATLEQHALVR 69


>gi|167839980|ref|ZP_02466664.1| transcriptional regulator, ArsR family protein [Burkholderia
          thailandensis MSMB43]
          Length = 115

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R+LM C +       +S I     I +  L + L  L +  +VET R G+     L    
Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLGVLREHALVETRRDGKNIYYSLASEP 91

Query: 71 D 71
           
Sbjct: 92 A 92


>gi|161524313|ref|YP_001579325.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189350931|ref|YP_001946559.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|221214783|ref|ZP_03587752.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
 gi|160341742|gb|ABX14828.1| transcriptional regulator, IclR family [Burkholderia multivorans
          ATCC 17616]
 gi|189334953|dbj|BAG44023.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|221165322|gb|EED97799.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
          Length = 269

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|148555159|ref|YP_001262741.1| ArsR family transcriptional regulator [Sphingomonas wittichii
          RW1]
 gi|148500349|gb|ABQ68603.1| transcriptional regulator, ArsR family [Sphingomonas wittichii
          RW1]
          Length = 110

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H        +IA    + +  +   L  L +AG+V + R
Sbjct: 25 LVKHEPVGMAAGEIARRLDVPQNTMSAHLGILARAGLVRSER 66


>gi|117927782|ref|YP_872333.1| GntR family transcriptional regulator [Acidothermus
          cellulolyticus 11B]
 gi|117648245|gb|ABK52347.1| transcriptional regulator, GntR family [Acidothermus
          cellulolyticus 11B]
          Length = 253

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           Y +R L+  A   D     +Q+     +S + + + L  L + G +E  +GR 
Sbjct: 31 RY-LRELIASAKPGDRLPSEAQLCARFGVSRMTVRQALGELERDGSIERSQGRG 83


>gi|114045690|ref|YP_736240.1| biotin--protein ligase [Shewanella sp. MR-7]
 gi|113887132|gb|ABI41183.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. MR-7]
          Length = 319

 Score = 34.9 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
          + ++Y     ++A    IS   + K +  L   G+ + +V+GR  G +L  P   I    
Sbjct: 15 LSSEYFVSGEELATQLGISRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72

Query: 78 VVKATEESFFVAECFASHKID 98
          ++++ +       CF   +I 
Sbjct: 73 LIQSID-----NRCFYFDEIP 88


>gi|326386102|ref|ZP_08207726.1| transcriptional regulator, GntR family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209327|gb|EGD60120.1| transcriptional regulator, GntR family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 218

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          A+ +     I  IA+    S   + + L  L   G+VE VR R  G R+     +I+  D
Sbjct: 22 ALRSGSLYSIGDIAQQLGTSPTPIREALLELENDGLVELVRNR--GFRI----REISRAD 75

Query: 78 V 78
          +
Sbjct: 76 I 76


>gi|311896260|dbj|BAJ28668.1| putative IclR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 216

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++  D G+RVL   A  ++    ++++A    ++   ++++L  L + G+V 
Sbjct: 6  SQTLDRGVRVLKLLA-DSERGLTVTELAARLAVNRTVVYRLLATLEQHGLVR 56


>gi|300724533|ref|YP_003713858.1| transcriptional regulator [Xenorhabdus nematophila ATCC 19061]
 gi|297631075|emb|CBJ91761.1| TRANSCRIPTION REGULATOR PROTEIN [Xenorhabdus nematophila ATCC
           19061]
          Length = 156

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 20/132 (15%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           RVL   A     P  IS +A+     +  + ++LQ L   G V       G  R      
Sbjct: 42  RVLSTLA--GSGPIGISLLAQRTVSKQPTITRVLQRLESQGHVARFSNGGGDRR------ 93

Query: 72  QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
            IT+   V+ TE    V E   +              SVL    N    +L +  ++ L+
Sbjct: 94  -ITL---VRLTETGLEVVEELLAEAKSHE-------QSVLEPLGNGKSQLLKEV-LQELI 141

Query: 132 RNRSSIKKIFNA 143
           +  + I+K+   
Sbjct: 142 KQHTPIRKVLGE 153


>gi|293376298|ref|ZP_06622538.1| transcriptional regulator, AraC family [Turicibacter sanguinis
           PC909]
 gi|325843206|ref|ZP_08167892.1| transcriptional regulator, AraC family [Turicibacter sp. HGF1]
 gi|292645076|gb|EFF63146.1| transcriptional regulator, AraC family [Turicibacter sanguinis
           PC909]
 gi|325489450|gb|EGC91820.1| transcriptional regulator, AraC family [Turicibacter sp. HGF1]
          Length = 276

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 3   LTKRTDYGIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
           ++K++DY IR  + +   +      + +I+    I+  +L K+   L
Sbjct: 166 MSKQSDY-IRQAIEFIETNYARHITVEEISNYVGINRKYLTKLFNEL 211


>gi|289644341|ref|ZP_06476425.1| transcriptional regulator, GntR family [Frankia symbiont of
          Datisca glomerata]
 gi|289505866|gb|EFD26881.1| transcriptional regulator, GntR family [Frankia symbiont of
          Datisca glomerata]
          Length = 263

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++A+   +S + + + +Q L   G+V  +RGR 
Sbjct: 36 AELADKMGVSRVTINRAVQILRAEGLVRVLRGRG 69


>gi|262274231|ref|ZP_06052043.1| transcriptional regulator IclR family [Grimontia hollisae CIP
          101886]
 gi|262222041|gb|EEY73354.1| transcriptional regulator IclR family [Grimontia hollisae CIP
          101886]
          Length = 255

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          RVL  +     ++ P   ++++    I +  + ++LQ L + G V+T    RGG+     
Sbjct: 14 RVLEIIEAVSRSERPPSPAELSIMLDIPKPSIHRLLQQLEREGFVQTNM--RGGLIPANR 71

Query: 70 ADQITIL 76
             I + 
Sbjct: 72 MHDIALG 78


>gi|259046503|ref|ZP_05736904.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
 gi|259036668|gb|EEW37923.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
          Length = 297

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y  + +      SQ+A+   +S   +++ +  L  AGI +   +G+ GG+ + R 
Sbjct: 7  FRLLYY--VLSKRKVTASQLADHFEVSIRTIYRDIDNLSSAGIPIYATQGKGGGIEISRD 64


>gi|256379974|ref|YP_003103634.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255924277|gb|ACU39788.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
          43827]
          Length = 164

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          T+Y +  L+  A   +   R+S++A A  +S   + +++  +V+ G++E
Sbjct: 45 TEYAV--LLMLAEAPERRLRMSELASAVALSGSRVTRVVDAMVRLGLLE 91


>gi|312110477|ref|YP_003988793.1| bifunctional BirA, biotin operon
          repressor/biotin--acetyl-CoA-carboxylase ligase
          [Geobacillus sp. Y4.1MC1]
 gi|311215578|gb|ADP74182.1| bifunctional BirA, biotin operon
          repressor/biotin--acetyl-CoA-carboxylase ligase
          [Geobacillus sp. Y4.1MC1]
          Length = 329

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R L+   +  N       +I+E    S   ++K ++ L K G  +E VR    G R+ + 
Sbjct: 11 RKLLELFSEANGEFISGQKISEMLGCSRTAVWKHIEELRKEGFELEAVRRL--GYRIVKA 68

Query: 70 ADQITILDV 78
           D++T  ++
Sbjct: 69 PDKVTANEI 77


>gi|221090739|ref|XP_002170430.1| PREDICTED: similar to transposase-like [Hydra magnipapillata]
          Length = 303

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +L+  A   +       IA+   +S+  L K L  + + G   + RGR G
Sbjct: 15 ILI-LAQQKN---STRDIAKIVNVSQSCLSKTLSRIRQCG-TFSSRGRSG 59


>gi|219557642|ref|ZP_03536718.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|260200781|ref|ZP_05768272.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289443178|ref|ZP_06432922.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289569770|ref|ZP_06449997.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289416097|gb|EFD13337.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289543524|gb|EFD47172.1| transcriptional regulator [Mycobacterium tuberculosis T17]
          Length = 259

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             +L     H    ++ ++I E   ++   + +IL  L   G+V + R  RG  RL   
Sbjct: 19 AAELLRVLQAHPGGLSQ-AEIGERVGMARSTVSRILNALEDEGLVASRR-ARGPYRLGP- 75

Query: 70 ADQIT 74
            +IT
Sbjct: 76 --EIT 78


>gi|148271560|ref|YP_001221121.1| GntR family transcriptional regulator [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
 gi|147829490|emb|CAN00403.1| putative transcriptional regulator, GntR family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +  S++AE   +    + + +  L   G+V + RG  
Sbjct: 33 GAKLSSESELAERFQVHRHTVRQAVAALATDGLVVSRRGSG 73


>gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 219

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y  ++       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|138895844|ref|YP_001126297.1| GntR family transcriptional regulator [Geobacillus
          thermodenitrificans NG80-2]
 gi|134267357|gb|ABO67552.1| Transcriptional regulator GntR family [Geobacillus
          thermodenitrificans NG80-2]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                    ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 28 QPGEMIPSERELAETYDISRMTVRQAVNNLVNDGYLVRRRGKG 70


>gi|92112430|ref|YP_572358.1| IclR family transcriptional regulator [Chromohalobacter
          salexigens DSM 3043]
 gi|91795520|gb|ABE57659.1| transcriptional regulator, IclR family [Chromohalobacter
          salexigens DSM 3043]
          Length = 260

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +RVL   +   D    + ++AE   I +    +I   L + G V     R G  RL 
Sbjct: 10 LRVLETLSSEPDG-IPLQRLAERLEIPKSAAHRICNELGRQGYVR-QETRTGHYRLS 64


>gi|10803659|ref|NP_046057.1| hypothetical protein VNG7112 [Halobacterium sp. NRC-1]
 gi|169237301|ref|YP_001690507.1| hypothetical protein OE7209F [Halobacterium salinarum R1]
 gi|169237344|ref|YP_001690549.1| hypothetical protein OE8041F [Halobacterium salinarum R1]
 gi|2822390|gb|AAC82896.1| unknown [Halobacterium sp. NRC-1]
 gi|167728367|emb|CAP15171.1| hypothetical protein OE7209F [Halobacterium salinarum R1]
 gi|167728860|emb|CAP15752.1| hypothetical protein OE8041F [Halobacterium salinarum R1]
          Length = 130

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           L +   H++Y     +IA+   I+E  + K ++ L +  +VE
Sbjct: 25 ALDFLVRHHEYGFSPREIADRTDINESSVAKTMRRLEENDVVE 67


>gi|45357615|ref|NP_987172.1| putative CBS domain-containing signal transduction protein
          [Methanococcus maripaludis S2]
 gi|45047175|emb|CAF29608.1| Conserved Hypothetical protein with 2 CBS domains [Methanococcus
          maripaludis S2]
          Length = 303

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          L+      +   + ++IA     +   +   +Q L    +V+ V G +GG 
Sbjct: 14 LISIYREKNKAVKGTEIAVKLSRNPGTIRNQMQALRALNLVDGVPGPKGGY 64


>gi|317405373|gb|EFV85691.1| ArsR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 228

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71
            L+   +  +  + + Q+A    +S     + LQ L +AG +++ R G+    R      
Sbjct: 35  ALLQAVLQRE--STVEQLALGVGLSITNASQHLQQLKRAGFIQSRRDGKHVLYRGGAGP- 91

Query: 72  QITILDVVKATEE 84
              + +V+ A ++
Sbjct: 92  ---VSEVLSALQD 101


>gi|281358007|ref|ZP_06244491.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
          BAA-548]
 gi|281315380|gb|EFA99409.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
          BAA-548]
          Length = 200

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
            P   S ++EA  I+     K+L+ LV  G  E    +RGG  L   A
Sbjct: 19 GAPATPSSLSEAVGINPSTARKLLEDLVLTGFAE-QSSKRGGYTLGPSA 66


>gi|269959234|ref|ZP_06173618.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835936|gb|EEZ90011.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 316

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 6   RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  Y I          +      +IAE   +S   + + +  L   G+VE  +G  
Sbjct: 75  KGAYAI---------GERLPTEREIAEQYDVSRTVIREAIIMLELEGLVEVRKGSG 121


>gi|291295011|ref|YP_003506409.1| ABC-3 protein [Meiothermus ruber DSM 1279]
 gi|290469970|gb|ADD27389.1| ABC-3 protein [Meiothermus ruber DSM 1279]
          Length = 364

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 10  GIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             R+L+ + A H+D P    ++ E    +  FL ++ +   +AG +E VR
Sbjct: 295 AARLLVAHLA-HHDQPVPEGEVLEEFGWNPRFLKQVREKARQAGWLEVVR 343


>gi|254453203|ref|ZP_05066640.1| regulatory protein GntR, HTH [Octadecabacter antarcticus 238]
 gi|198267609|gb|EDY91879.1| regulatory protein GntR, HTH [Octadecabacter antarcticus 238]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP------ADQIT 74
           ++     ++++E   +S   + + L+ L    ++ T RG  GG  + R         QIT
Sbjct: 27  DERLPSEAELSEQFAVSRSTVREALKRLAAQSLIRTQRGAMGGAFVNRLTFEQAYGQQIT 86

Query: 75  ILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAF 118
              ++ +  +  F   C   FA  +   PL         L       
Sbjct: 87  TSALLLSMNDVNFDTACEARFALERACAPLSAQRRTADHLATMRAEI 133


>gi|167842127|ref|ZP_02468811.1| transcriptional regulator [Burkholderia thailandensis MSMB43]
          Length = 513

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 10  GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
            +R  L+Y   H   P  + Q+A+   +S   L  + +
Sbjct: 410 ALRKALLYLGEHYANPISMEQLAQHAHVSPSHLSYLFR 447


>gi|157370119|ref|YP_001478108.1| ArsR family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157321883|gb|ABV40980.1| transcriptional regulator, ArsR family [Serratia proteamaculans
          568]
          Length = 103

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     + ++A+A  I +  L + L  L + G+V T R
Sbjct: 26 LLLLCQLSQGEMSVGELAQALEIRQPTLSQQLGVLRQEGLVSTRR 70


>gi|83952675|ref|ZP_00961405.1| transcriptional regulator, DeoR family protein [Roseovarius
          nubinhibens ISM]
 gi|83835810|gb|EAP75109.1| transcriptional regulator, DeoR family protein [Roseovarius
          nubinhibens ISM]
          Length = 265

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
              R + +AEA  +SE  + + ++ L K GIV  V    GGV L 
Sbjct: 24 GGSARTAALAEALSVSEETVRRTVKALAKTGIVHRV---HGGVYLA 66


>gi|325110667|ref|YP_004271735.1| regulatory protein ArsR [Planctomyces brasiliensis DSM 5305]
 gi|324970935|gb|ADY61713.1| regulatory protein ArsR [Planctomyces brasiliensis DSM 5305]
          Length = 107

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC------RPADQIT 74
           D P  +++I  +  +    L   L+ L +AG+V   R GR     L       R    I 
Sbjct: 39  DGPRTVAEINASLDVEPTLLSHHLRALREAGLVTRERQGRHASYALASALVERRKGRAID 98

Query: 75  IL 76
           + 
Sbjct: 99  LG 100


>gi|319762845|ref|YP_004126782.1| cyclic nucleotide-binding protein [Alicycliphilus denitrificans BC]
 gi|330824924|ref|YP_004388227.1| Crp/Fnr family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117406|gb|ADU99894.1| cyclic nucleotide-binding protein [Alicycliphilus denitrificans BC]
 gi|329310296|gb|AEB84711.1| transcriptional regulator, Crp/Fnr family [Alicycliphilus
           denitrificans K601]
          Length = 239

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           A++   P   + IA    I+  +  ++L  L +AG++ 
Sbjct: 182 ALNVSLPVSKATIASRLSITPEYFSRVLHELEEAGLIR 219


>gi|296117378|ref|ZP_06835968.1| manganese transport regulator MntR [Gluconacetobacter hansenii
          ATCC 23769]
 gi|295976144|gb|EFG82932.1| manganese transport regulator MntR [Gluconacetobacter hansenii
          ATCC 23769]
          Length = 152

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 4  TKRT----DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +++T    DY + ++    +H+    R   IA+   +S+  + K+L  L   G+V   R 
Sbjct: 17 SRKTALVEDY-VELIADL-LHDGQEARQVDIAQRLGVSQPTVAKMLCRLEADGLVT--RR 72

Query: 60 RRGGVRLCRPADQ 72
             G+ L    ++
Sbjct: 73 PYRGIFLTEAGEK 85


>gi|320008873|gb|ADW03723.1| helix-turn-helix, type 11 domain-containing protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 238

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           L+        P   +++A+   +S   + + +  L  AG+ +    G  GG  + R 
Sbjct: 9  ALVDLLRGARRPRPAARLADEFGVSTRTIERDIAALQLAGVPIYAEHGATGGYAILRE 66


>gi|302523099|ref|ZP_07275441.1| DeoR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|302431994|gb|EFL03810.1| DeoR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 410

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   ++   + + +  L + G  + TV+G  GG RL
Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63


>gi|302525428|ref|ZP_07277770.1| DeoR family transcriptional regulator [Streptomyces sp. AA4]
 gi|302434323|gb|EFL06139.1| DeoR family transcriptional regulator [Streptomyces sp. AA4]
          Length = 308

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            +        +++AE   IS     + L+ L  AGI V    GR GG  L
Sbjct: 11 LLLQARGRVTAAELAEDLEISVATARRDLEALSAAGIPVYPQPGRGGGWSL 61


>gi|229161590|ref|ZP_04289570.1| Transcriptional regulator, DeoR [Bacillus cereus R309803]
 gi|228621835|gb|EEK78681.1| Transcriptional regulator, DeoR [Bacillus cereus R309803]
          Length = 320

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +       QI+E   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LRSGEKITAKQISEKLEINIRTVYRYIDTLSTSGVPIISEPGHNGGYTL 62


>gi|168187242|ref|ZP_02621877.1| transcriptional regulator, GntR family [Clostridium botulinum C
          str. Eklund]
 gi|169294879|gb|EDS77012.1| transcriptional regulator, GntR family [Clostridium botulinum C
          str. Eklund]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D      ++ E   IS   + + +Q L   G V    G+ 
Sbjct: 30 QEHDKLPSERELCEQYDISRSTVRQTMQELENNGYVYREHGKG 72


>gi|167769178|ref|ZP_02441231.1| hypothetical protein ANACOL_00501 [Anaerotruncus colihominis DSM
          17241]
 gi|167668818|gb|EDS12948.1| hypothetical protein ANACOL_00501 [Anaerotruncus colihominis DSM
          17241]
          Length = 123

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  L   A   +    +  +A    I+   + K  Q L + G++ +V G+ 
Sbjct: 23 LVALGALA-PGEQLPSVRALARDLGINPNTVQKAYQELERRGVICSVAGKG 72


>gi|167586735|ref|ZP_02379123.1| transcriptional regulator, IclR family protein [Burkholderia
          ubonensis Bu]
          Length = 269

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|134103427|ref|YP_001109088.1| transcriptional regulator/aminotransferase [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291006033|ref|ZP_06564006.1| transcriptional regulator/aminotransferase [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133916050|emb|CAM06163.1| transcriptional regulator/aminotransferase [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 483

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +AE   +S   + + L+ L ++G  E+ RG  
Sbjct: 55 RDLAETLGVSRTLVARTLERLRESGFAESRRGAG 88


>gi|118443452|ref|YP_878791.1| GntR family transcriptional regulator [Clostridium novyi NT]
 gi|118133908|gb|ABK60952.1| transcriptional regulator, GntR family [Clostridium novyi NT]
          Length = 244

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D      ++ E   IS   + + +Q L   G V    G+ 
Sbjct: 32 QEHDKLPSERELCEQYDISRSTVRQTMQELENNGYVYREHGKG 74


>gi|322390859|ref|ZP_08064368.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis ATCC 903]
 gi|321142444|gb|EFX37913.1| cyclic nucleotide-binding domain protein [Streptococcus
           parasanguinis ATCC 903]
          Length = 228

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           H + +       L +C  +     +++Q+A    IS   L ++++ +++ G+V+
Sbjct: 148 HYSVKERLASHFLKHCDENGTLKPKMNQLALRFGISYRHLSRVIKQMIEEGLVQ 201


>gi|315647850|ref|ZP_07900951.1| ROK family protein [Paenibacillus vortex V453]
 gi|315276496|gb|EFU39839.1| ROK family protein [Paenibacillus vortex V453]
          Length = 386

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73
          I N+ P   + IA+   +S   + +I+  L + G V     +   GR       R +  I
Sbjct: 21 IKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74

Query: 74 TILD 77
           +LD
Sbjct: 75 RLLD 78


>gi|307132876|ref|YP_003884892.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306530405|gb|ADN00336.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 401

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL-QPLV 49
           I+ L+Y   H      + ++AE   IS   L  +L   L 
Sbjct: 291 IKALLYLGEHFQQEVTLIELAENSHISPSHLSYLLKHSLR 330


>gi|295398916|ref|ZP_06808898.1| biotin/acetyl-CoA-carboxylase ligase [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294978382|gb|EFG53978.1| biotin/acetyl-CoA-carboxylase ligase [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 329

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          R L+   +  N       +I+E    S   ++K ++ L K G  +E VR    G R+ + 
Sbjct: 11 RKLLELFSEANGEFISGQKISEMLGCSRTAVWKHIEELRKEGFELEAVRRL--GYRIVKA 68

Query: 70 ADQITILDV 78
           D++T  ++
Sbjct: 69 PDKVTANEI 77


>gi|238059827|ref|ZP_04604536.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237881638|gb|EEP70466.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 109

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R  +  A+  D P   +++AE    +   L   L  L   G+V     GRR    L  P 
Sbjct: 22  RARLLLALR-DGPGYPAELAELLGTTRQNLSNHLTCLRGCGLVVAAPEGRRTRYELADPR 80

Query: 71  DQITILDVVKATEESFFVAECFASHKIDC 99
               + D++     +     C  S + DC
Sbjct: 81  LSHALGDLLGLV-LAVDPVACPDSDEKDC 108


>gi|206560084|ref|YP_002230848.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
 gi|198036125|emb|CAR52020.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
          Length = 247

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                  A +    V +    H +   L  +   T+VL K   A    L       +V +
Sbjct: 71  A-----AAIDAPDPVVDIVHPHLVA--LRDASRETAVLGKIQGASVTYL------DVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|159040740|ref|YP_001539992.1| transcriptional regulator, TrmB [Caldivirga maquilingensis
          IC-167]
 gi|157919575|gb|ABW01002.1| transcriptional regulator, TrmB [Caldivirga maquilingensis
          IC-167]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          + Y +RV  Y  +    P     IA+   +    ++ +L+ +V+ G+++   G+R  V +
Sbjct: 16 SKYQLRV--YLTLVERGPLTAGLIAKYADVPSSKVYSVLKSMVRLGLIDVDSGKRPEVFV 73

Query: 67 CRPADQI------TILDVVK 80
           +P  ++       I D+V+
Sbjct: 74 AKPPKEMFNIVVSRINDIVE 93


>gi|333023081|ref|ZP_08451145.1| putative DeoR family transcriptional regulator [Streptomyces sp.
          Tu6071]
 gi|332742933|gb|EGJ73374.1| putative DeoR family transcriptional regulator [Streptomyces sp.
          Tu6071]
          Length = 424

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   ++   + + +  L + G  + TV+G  GG RL
Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63


>gi|330988172|gb|EGH86275.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 244

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
             E    +            L         L +   AF  +L  
Sbjct: 103 LLEFRLSL------EVEAAGLAAQRRSPEALLELKRAFDALLDG 140


>gi|332285535|ref|YP_004417446.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330429488|gb|AEC20822.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 238

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
            ++E    S   + ++L  L  +G +    G   G    RPA +I+
Sbjct: 41 RDLSERFNTSRGSVRRVLAALRDSGWITQAVGS--GTFAARPAHEIS 85


>gi|322373802|ref|ZP_08048337.1| adc operon repressor AdcR [Streptococcus sp. C150]
 gi|321277174|gb|EFX54244.1| adc operon repressor AdcR [Streptococcus sp. C150]
          Length = 151

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67
            +LM  A   +     S++A+   +S+  + K ++ LVK G++E  + +  G      L 
Sbjct: 46  HILMLLA---EGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKDDGRVTYFVLT 102

Query: 68  RPADQI 73
           + A  I
Sbjct: 103 QEAQPI 108


>gi|313899580|ref|ZP_07833089.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
 gi|312955687|gb|EFR37346.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
          Length = 255

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          +H +   ++ +++E   +SE  + K L  L   G+++      GG  L R 
Sbjct: 14 LHANGKVKVKELSERFSVSEDLIRKDLSALEAKGLLKK---AYGGAVLIRE 61


>gi|311069054|ref|YP_003973977.1| manganese transport transcriptional regulator [Bacillus
          atrophaeus 1942]
 gi|310869571|gb|ADP33046.1| manganese transport transcriptional regulator [Bacillus
          atrophaeus 1942]
          Length = 142

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|307710287|ref|ZP_07646728.1| putative transcriptional repressor [Streptococcus mitis SK564]
 gi|307618879|gb|EFN98014.1| putative transcriptional repressor [Streptococcus mitis SK564]
          Length = 146

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|257051219|ref|YP_003129052.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940]
 gi|256689982|gb|ACV10319.1| transcriptional regulator, TrmB [Halorhabdus utahensis DSM 12940]
          Length = 356

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           Y A+  +   + S IA+A  +S+ +++ + + L   G VE
Sbjct: 25 TYLAVLENGEAKASTIADATGVSKRYVYSVCEELEDQGFVE 65


>gi|209885930|ref|YP_002289787.1| GntR-family transcriptional regulator [Oligotropha
          carboxidovorans OM5]
 gi|209874126|gb|ACI93922.1| GntR-family transcriptional regulator [Oligotropha
          carboxidovorans OM5]
          Length = 425

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +    +  IR   + A   +    I  +A+   ++   +    + L  AG++E  RGR
Sbjct: 1  MQIMSSLEAAIRRGTFAA--GEALPPIRTLADKLGVNRNTVASAYRQLSDAGLIEG-RGR 57

Query: 61 RG 62
          +G
Sbjct: 58 QG 59


>gi|163752639|ref|ZP_02159812.1| birA bifunctional protein [Shewanella benthica KT99]
 gi|161327469|gb|EDP98682.1| birA bifunctional protein [Shewanella benthica KT99]
          Length = 320

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
          A+  +      ++A+   IS   + K +  L   G+ + +V+G+  G +L  P   I
Sbjct: 14 ALAGELFVSGEELAKQAGISRTAISKHIDSLEDYGVEIFSVKGK--GYKLANPVSLI 68


>gi|71734123|ref|YP_276371.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554676|gb|AAZ33887.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|71065512|ref|YP_264239.1| ArsR family transcriptional regulator [Psychrobacter arcticus
          273-4]
 gi|71038497|gb|AAZ18805.1| transcriptional regulator, ArsR family [Psychrobacter arcticus
          273-4]
          Length = 124

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   ++       H        +IA    +    +   L  L +AG V + R
Sbjct: 13 LSQDTR--LKAFRLLVSHEPKGLAAGEIARQLSVPHNTMSTHLAVLARAGWVISER 66


>gi|15904019|ref|NP_359569.1| adc operon repressor AdcR [Streptococcus pneumoniae R6]
 gi|148998024|ref|ZP_01825537.1| Transcriptional repressor for Zn(2+)-responsive expression
           [Streptococcus pneumoniae SP11-BS70]
 gi|182685110|ref|YP_001836857.1| adc operon repressor AdcR [Streptococcus pneumoniae CGSP14]
 gi|183603586|ref|ZP_02964427.1| putative transcriptional repressor [Streptococcus pneumoniae
           CDC0288-04]
 gi|298501678|ref|YP_003723618.1| multiple antibiotic resistance operon transcriptional repressor
           MarR family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307128436|ref|YP_003880467.1| putative transcriptional repressor [Streptococcus pneumoniae
           670-6B]
 gi|15459680|gb|AAL00780.1| Transcriptional repressor for Zn(2+)-responsive expression
           [Streptococcus pneumoniae R6]
 gi|147756034|gb|EDK63077.1| Transcriptional repressor for Zn(2+)-responsive expression
           [Streptococcus pneumoniae SP11-BS70]
 gi|182630444|gb|ACB91392.1| adc operon repressor AdcR [Streptococcus pneumoniae CGSP14]
 gi|183574062|gb|EDT94590.1| putative transcriptional repressor [Streptococcus pneumoniae
           CDC0288-04]
 gi|298237273|gb|ADI68404.1| multiple antibiotic resistance operon transcriptional repressor
           MarR family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|306485498|gb|ADM92367.1| putative transcriptional repressor [Streptococcus pneumoniae
           670-6B]
          Length = 166

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 62  HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 105


>gi|70726457|ref|YP_253371.1| hypothetical protein SH1456 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68447181|dbj|BAE04765.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 323

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++K +   IR ++Y   H         IA    IS   + K++  L K G  +E++  + 
Sbjct: 1  MSKYSQDVIR-MLYM--HQSEYISGQYIANQLNISRAAVKKVIDQLKKDGCKIESINHK- 56

Query: 62 GGVRLCRPAD 71
           G +L    D
Sbjct: 57 -GHQLNELPD 65


>gi|77408449|ref|ZP_00785188.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           COH1]
 gi|77172972|gb|EAO76102.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           COH1]
          Length = 214

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVE 55
           +S +A++  IS   L +++  +VK G+++
Sbjct: 165 LSSLADSFGISYRHLLRVIHDMVKEGLIQ 193


>gi|152966810|ref|YP_001362594.1| MarR family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151361327|gb|ABS04330.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
          SRS30216]
          Length = 188

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          + L+    H   P  I  +A    ++   + + +  + + G++++  G
Sbjct: 49 KALIRLHRHG--PLTIKALAGHLGVTHSAMSQTVTAMRRDGLLDSAPG 94


>gi|329895947|ref|ZP_08271236.1| Glycolate utilization operon transcriptional activator GlcC
          [gamma proteobacterium IMCC3088]
 gi|328922079|gb|EGG29440.1| Glycolate utilization operon transcriptional activator GlcC
          [gamma proteobacterium IMCC3088]
          Length = 254

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           Q+A+   +S   + + L+ L   GI+ET RGR 
Sbjct: 35 RQLAQRLSVSRPVVREALKELRGRGIIETQRGRG 68


>gi|310658916|ref|YP_003936637.1| GntR family transcriptional regulator [Clostridium sticklandii
          DSM 519]
 gi|308825694|emb|CBH21732.1| transcriptional regulator, GntR family [Clostridium sticklandii]
          Length = 127

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          I  +    +  +A+   ++   + K  Q L + GI+ T+RG+ 
Sbjct: 30 IPGERLPSVRDMAKEMTLNPNTVQKAYQELERQGIISTLRGKG 72


>gi|240173236|ref|ZP_04751894.1| putative transcriptional regulatory protein [Mycobacterium
          kansasii ATCC 12478]
          Length = 119

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++++ Y    +       ++A A  +S+  +   L  L  AG+V + R
Sbjct: 45 VKIMSYLFSSSAGEQTSGELAAALSLSDGTVSHHLAQLRNAGLVISDR 92


>gi|239987242|ref|ZP_04707906.1| putative AfsR-like transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 134

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 33/117 (28%)

Query: 11  IRVLM-YCAIHNDYPNRISQI----------AEACCISELFLFKILQPLVKA---GIVET 56
           +R L+   A+          +          A+A       L  ++  L +A   G VE+
Sbjct: 29  LRALLTVLALRPGRTVPAGHLVDEVWDGDPPADAAGA----LQALVGRLRRALGRGAVES 84

Query: 57  VRGRRGGVRLCRPADQITI-------LDVVKATEESFFVAECFASHKIDCPLVGSCG 106
           V    GG RL  P D + +        +  +A E+    A               CG
Sbjct: 85  V---AGGYRLAAPPDAVDLHRFERLAGEGSRALEDGEPPA-----PSPPWGRPSPCG 133


>gi|218283597|ref|ZP_03489569.1| hypothetical protein EUBIFOR_02159 [Eubacterium biforme DSM 3989]
 gi|218215746|gb|EEC89284.1| hypothetical protein EUBIFOR_02159 [Eubacterium biforme DSM 3989]
          Length = 251

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +Y A   +     ++++E   +S++ + K +Q L   G V+ V+G+ 
Sbjct: 25 VYVAR--EKMPTENELSEQYNVSKITIRKAIQNLSDEGYVKKVQGKG 69


>gi|261408677|ref|YP_003244918.1| MarR family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261285140|gb|ACX67111.1| transcriptional regulator, MarR family [Paenibacillus sp.
          Y412MC10]
          Length = 158

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
             P  ++ IAE   +S+    KI   L+KAG V 
Sbjct: 60 EQEPINLTSIAERINLSKGNTSKIANKLLKAGWVR 94


>gi|170693338|ref|ZP_02884498.1| transcriptional regulator, ArsR family [Burkholderia graminis
          C4D1M]
 gi|170141868|gb|EDT10036.1| transcriptional regulator, ArsR family [Burkholderia graminis
          C4D1M]
          Length = 111

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R ++     ++    +  I E   +S+  + K L+ L  AG VE+ 
Sbjct: 14 RAILSLLAASEQ--SVGDIEEQLNLSQPSVSKHLRVLRDAGFVESR 57


>gi|163844673|ref|YP_001622328.1| hypothetical protein BSUIS_B0510 [Brucella suis ATCC 23445]
 gi|163675396|gb|ABY39506.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 257

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 45 GEALPPERDIAEYANISRVTVRKAMDDLVKAGLL--VRRHGSGTFVVRPGERV 95


>gi|157370157|ref|YP_001478146.1| manganese transport regulator MntR [Serratia proteamaculans 568]
 gi|157321921|gb|ABV41018.1| iron (metal) dependent repressor, DtxR family [Serratia
           proteamaculans 568]
          Length = 156

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV--- 79
              R + IA+   +S     K +  L  AG+VE+      GV L    +Q  +   V   
Sbjct: 54  REARTTDIAKRFGVSHPTAIKNIARLKSAGLVESR--PYRGVFLTEEGEQ--LAQKVRRR 109

Query: 80  -KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
            +       +  C         L        +    L  F   L ++
Sbjct: 110 HRIV---VDLLVCLGVPNETAELDSEGIEHHISSDTLAVFEQYLQKH 153


>gi|16119548|ref|NP_396254.1| ArsR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15162102|gb|AAK90695.1| transcriptional regulator, ArsR family [Agrobacterium tumefaciens
           str. C58]
          Length = 119

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 27/118 (22%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L++ T   + ++    +          +AE   +S   +   L+ L +AG+++  R    
Sbjct: 13  LSQETR--LHIVRILVVAGPDGMAAGAVAERAKVSPSNVSFHLKELERAGLIKQKR---- 66

Query: 63  GVRLCRPADQI-------TILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSV 110
                  A  I        +  +++     F + +C A H   C       +CG+ + 
Sbjct: 67  ------EARSIIYTANYHCLGALIR-----FLMEDCCAGHPEICAQAVEVAACGVQTA 113


>gi|333023637|ref|ZP_08451701.1| putative GntR family transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332743489|gb|EGJ73930.1| putative GntR family transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 281

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 10  GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC 67
            +R  +    +          + E   +S   + + +Q L   G VETV     G R L 
Sbjct: 94  ALRTALDSGELEPGRVYSAPALGERYGVSATPVREAMQRLAAEGAVETV--PNRGFRVLA 151

Query: 68  RPADQ-ITILDVVKATE 83
           R AD    + +V+   E
Sbjct: 152 RTADDAAALAEVLFLIE 168


>gi|330816062|ref|YP_004359767.1| Transcriptional regulator, GntR family protein [Burkholderia
           gladioli BSR3]
 gi|327368455|gb|AEA59811.1| Transcriptional regulator, GntR family protein [Burkholderia
           gladioli BSR3]
          Length = 252

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 15/113 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--------PA 70
              D     +++  +  +S   + + +  +  +G++ET  G  G   L            
Sbjct: 35  RPGDKLPTETEVMASQGVSRTVVREAISRMQASGLIETRHGI-GSFVLAPERRRALGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
             I T+ DV+   E    + +EC +                 LR+AL+A    
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANEAD----LVALRRALDAIAQS 142


>gi|311695920|gb|ADP98793.1| GntR domain protein [marine bacterium HP15]
          Length = 252

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 1  MHLTKRTDYGI-RVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +++   Y + R+++   +  +       Q+A    +S   + + L  L   G++ET  
Sbjct: 1  MAISQEISYRLERLILDGGLAPEQKIPSERQLATRLGVSRAVIREALHELQGRGVIETRH 60

Query: 59 GRR 61
          G+ 
Sbjct: 61 GKG 63


>gi|298293214|ref|YP_003695153.1| GntR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929725|gb|ADH90534.1| transcriptional regulator, GntR family [Starkeya novella DSM 506]
          Length = 225

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++   I    P    +IAE   +S   + +    L +AG+VE +  R 
Sbjct: 22 KAIITLEITPGAPLSEQEIAERYKVSRQPVREAFIALARAGLVEILPRRG 71


>gi|257482102|ref|ZP_05636143.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 208

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|302560721|ref|ZP_07313063.1| IclR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302478339|gb|EFL41432.1| IclR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 260

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + VL   A   D P R+ ++A+   +    ++ +LQ L+  G V T
Sbjct: 17 VEVLELLAARVDRPARLQELADTLGVPRSSMYALLQTLISRGWVRT 62


>gi|239833640|ref|ZP_04681968.1| regulatory protein ArsR [Ochrobactrum intermedium LMG 3301]
 gi|239821703|gb|EEQ93272.1| regulatory protein ArsR [Ochrobactrum intermedium LMG 3301]
          Length = 116

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +       + ++ EA  I +  L + L  L +AG+VET R
Sbjct: 39 RLMLACTLAEGE-YSVGELEEALGIHQPTLSQQLGVLREAGVVETRR 84


>gi|213965708|ref|ZP_03393901.1| transcriptional regulator, ArsR family [Corynebacterium
          amycolatum SK46]
 gi|213951659|gb|EEB63048.1| transcriptional regulator, ArsR family [Corynebacterium
          amycolatum SK46]
          Length = 230

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          + +L Y     + P R+  +AE+  I+E  L   L+ L +A IV+  R G+     +  P
Sbjct: 23 LAILEYL--LKNGPTRVRSLAESTNIAESTLSNNLRRLREAEIVDVERQGKSATYSIANP 80

Query: 70 ADQITILDVV 79
              +I  V+
Sbjct: 81 ----SIRQVI 86


>gi|182420188|ref|ZP_02951419.1| transcriptional regulator, GntR family [Clostridium butyricum
          5521]
 gi|237668245|ref|ZP_04528229.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182375991|gb|EDT73581.1| transcriptional regulator, GntR family [Clostridium butyricum
          5521]
 gi|237656593|gb|EEP54149.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 131

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ND    + +++    I+   + K    L + GI+ET+RG+ 
Sbjct: 32 NDKLPSVREMSTILTINPNTISKAYGELERDGIIETLRGKG 72


>gi|153832568|ref|ZP_01985235.1| GntR-family transcriptional regulator [Vibrio harveyi HY01]
 gi|148871134|gb|EDL70012.1| GntR-family transcriptional regulator [Vibrio harveyi HY01]
          Length = 238

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   IS   + K L  L   GIV++  G  
Sbjct: 28 RELAEKYDISRFSVRKALSKLEAIGIVKSKVGSG 61


>gi|89100877|ref|ZP_01173727.1| transcriptional regulator, ArsR family protein [Bacillus sp. NRRL
          B-14911]
 gi|89084413|gb|EAR63564.1| transcriptional regulator, ArsR family protein [Bacillus sp. NRRL
          B-14911]
          Length = 118

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          R ++      + P    +IA    IS   + K L  L +A +++  + GR     L
Sbjct: 20 REVLRLVAEKERPVS--EIAGHFSISRTAVAKHLHILSEAKLIKGRKAGREKLYTL 73


>gi|115361057|ref|YP_778194.1| GntR family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115286385|gb|ABI91860.1| transcriptional regulator, GntR family [Burkholderia ambifaria
          AMMD]
          Length = 493

 Score = 34.9 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+ +  A           +A+   +S   +      LV  G + +  G  
Sbjct: 31 ALRIEIAKAQPGTRLPPTRDLAKELGVSRNTVTTAYSELVNEGCIVSRFGAG 82


>gi|330719755|gb|EGG98275.1| Transcriptional regulator2C ArsR family [gamma proteobacterium
          IMCC2047]
          Length = 114

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +RV+ Y  +       +  I  +  +S+  + + L  L  AG+V + R
Sbjct: 19 LRVM-YLLLERGELC-VCDIVSSLEVSQSVVSRHLAYLRNAGLVSSRR 64


>gi|320450559|ref|YP_004202655.1| HTH domain family [Thermus scotoductus SA-01]
 gi|320150728|gb|ADW22106.1| HTH domain family [Thermus scotoductus SA-01]
          Length = 198

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV------RGRRGGVRL----CRPADQ 72
           P    ++AEA  +S + + K LQ L   G+V +       RGR    RL     R A  
Sbjct: 19 RPYTAKELAEALGVSRVAVLKHLQDLEARGLVRSEVRKCLGRGRP--YRLYMAQDREAPY 76

Query: 73 ITI-LDVVKATE 83
           ++  DV+K  E
Sbjct: 77 ASLCGDVLKEVE 88


>gi|312110540|ref|YP_003988856.1| transcriptional antiterminator, BglG [Geobacillus sp. Y4.1MC1]
 gi|311215641|gb|ADP74245.1| transcriptional antiterminator, BglG [Geobacillus sp. Y4.1MC1]
          Length = 638

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL-----VKAGIVETVRGRRGGVRL 66
          +L+  +  +  P     IA+   +S+  +   ++ +      K  ++E++RG+  G  L
Sbjct: 11 ILLLLS-KSKKPVTSEWIAKELGVSDRTIRNEIKQMQQNIESKGILIESIRGK--GYVL 66


>gi|296129277|ref|YP_003636527.1| transcriptional regulator, GntR family with aminotransferase
          domain [Cellulomonas flavigena DSM 20109]
 gi|296021092|gb|ADG74328.1| transcriptional regulator, GntR family with aminotransferase
          domain [Cellulomonas flavigena DSM 20109]
          Length = 446

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  D    + ++A A  +S   +    Q L  AG+V + RGR G   L  PA
Sbjct: 32 LPGDRLPTVRELAGALGVSPATVGSAWQTLASAGLVIS-RGRAGTSVLPGPA 82


>gi|295695167|ref|YP_003588405.1| transcriptional regulator, GntR family [Bacillus tusciae DSM
          2912]
 gi|295410769|gb|ADG05261.1| transcriptional regulator, GntR family [Bacillus tusciae DSM
          2912]
          Length = 320

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      +++E   +S   + +  Q L   G++ +++GR 
Sbjct: 33 GDKLPTERELSERLQVSRNTVSQAYQELEAEGVLTSIQGRG 73


>gi|312196815|ref|YP_004016876.1| GntR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228151|gb|ADP81006.1| transcriptional regulator, GntR family [Frankia sp. EuI1c]
          Length = 237

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          RV++  A        + +IA    +S + + + L  LV  G+V T R  RGG  + 
Sbjct: 34 RVILDGAAAPGSTVPVDEIAAHYQVSRIPVREALMSLVGEGLV-THR-ARGGYTVA 87


>gi|302543192|ref|ZP_07295534.1| ArsR family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302460810|gb|EFL23903.1| ArsR family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 118

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A   + P   +++AEA  + +      L+ L   G+V   R
Sbjct: 40 LLILARLREGPCPATELAEAVGMQQSACSHQLRLLRNLGLVTGTR 84


>gi|239927290|ref|ZP_04684243.1| MarR family regulatory protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291435631|ref|ZP_06575021.1| marR-family regulatory protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291338526|gb|EFE65482.1| marR-family regulatory protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 157

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          G+R ++   +H + P  + Q+  A  IS  F+ +++      G+VE+V
Sbjct: 47 GVRAVLAL-LHRNGPMTVPQMGRAQAISRQFVQRMVNDAAARGLVESV 93


>gi|163753991|ref|ZP_02161114.1| transcriptional regulator, DeoR family protein [Kordia algicida
          OT-1]
 gi|161326205|gb|EDP97531.1| transcriptional regulator, DeoR family protein [Kordia algicida
          OT-1]
          Length = 258

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 13 VLMYCA--------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG 63
          V+   A        + +      +++AE   +S   +++ ++ L +AG+ V T+ GR  G
Sbjct: 24 VMTQLARLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGR--G 81

Query: 64 VRL 66
            L
Sbjct: 82 YSL 84


>gi|144901033|emb|CAM77897.1| transcriptional regulator, GntR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 244

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 8   DYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
               R+L   A              Q+AE   +S + +   LQ L   G+++ V+G  GG
Sbjct: 20  RVADRILARIASGEWAVGQRLPGERQLAEDMGVSRVSVRAALQTLKTQGLLDAVQG--GG 77

Query: 64  VRLCRPAD--QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
            R+   A     ++  +VKA  E+               + G   + +  R A NA    
Sbjct: 78  TRVVSNAACMDASLAQLVKANHETLADLA---------EIRGQIEVWAARRAAQNATPAH 128

Query: 122 LTQYS 126
           L + S
Sbjct: 129 LAELS 133


>gi|332281596|ref|ZP_08394009.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332103948|gb|EGJ07294.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 571

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88

Query: 81 ATE 83
          A E
Sbjct: 89 ALE 91


>gi|332094601|gb|EGI99647.1| bacterial extracellular solute-binding protein, family 5
          [Shigella boydii 5216-82]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|323965132|gb|EGB60591.1| extracellular solute-binding protein [Escherichia coli M863]
 gi|327254773|gb|EGE66389.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli STEC_7v]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|323191365|gb|EFZ76628.1| bacterial extracellular solute-binding protein, family 5 Middle
          protein [Escherichia coli RN587/1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|320197081|gb|EFW71700.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli WV_060327]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|320186075|gb|EFW60820.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Shigella flexneri CDC 796-83]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|331681840|ref|ZP_08382473.1| putative extracellular solute-binding protein [Escherichia coli
          H299]
 gi|331081042|gb|EGI52207.1| putative extracellular solute-binding protein [Escherichia coli
          H299]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|331671991|ref|ZP_08372787.1| putative extracellular solute-binding protein [Escherichia coli
          TA280]
 gi|331070980|gb|EGI42339.1| putative extracellular solute-binding protein [Escherichia coli
          TA280]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|331661826|ref|ZP_08362749.1| putative extracellular solute-binding protein [Escherichia coli
          TA143]
 gi|331060248|gb|EGI32212.1| putative extracellular solute-binding protein [Escherichia coli
          TA143]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|300812572|ref|ZP_07092989.1| transcriptional regulator, ArsR family [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
 gi|300496445|gb|EFK31550.1| transcriptional regulator, ArsR family [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
          Length = 100

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          I +L Y   H + P     I     +S+  + K L  L K   V+
Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65


>gi|300937062|ref|ZP_07151928.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 21-1]
 gi|300457893|gb|EFK21386.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 21-1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|300900517|ref|ZP_07118684.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 198-1]
 gi|300355998|gb|EFJ71868.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 198-1]
          Length = 457

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|300958013|ref|ZP_07170177.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 175-1]
 gi|300315280|gb|EFJ65064.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 175-1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|301025650|ref|ZP_07189170.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 196-1]
 gi|299880031|gb|EFI88242.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 196-1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|293603747|ref|ZP_06686165.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292817850|gb|EFF76913.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 380

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 21/46 (45%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           ++ L+   I +  P     +++   +S   +  ++  L + G++ +
Sbjct: 55  LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 100


>gi|260450368|gb|ACX40790.1| extracellular solute-binding protein family 5 [Escherichia coli
          DH1]
 gi|315135127|dbj|BAJ42286.1| putative transporter subunit:periplasmic-binding component of ABC
          superfamily [Escherichia coli DH1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|258652482|ref|YP_003201638.1| ArsR family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258555707|gb|ACV78649.1| transcriptional regulator, ArsR family [Nakamurella multipartita
          DSM 44233]
          Length = 130

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
          R ++        P    ++ +A  I +  + K L+ L + G+V+   RGR+   RL    
Sbjct: 29 RQILDLLAGGGRPVN--ELVQALGIPQPLVSKHLRVLREVGLVQVHDRGRQRVYRLDGEP 86


>gi|260853668|ref|YP_003227559.1| putative transporter subunit [Escherichia coli O26:H11 str.
          11368]
 gi|260866606|ref|YP_003233008.1| putative transporter subunit [Escherichia coli O111:H- str.
          11128]
 gi|257752317|dbj|BAI23819.1| predicted transporter subunit [Escherichia coli O26:H11 str.
          11368]
 gi|257762962|dbj|BAI34457.1| predicted transporter subunit [Escherichia coli O111:H- str.
          11128]
 gi|323153482|gb|EFZ39736.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli EPECa14]
 gi|323178286|gb|EFZ63864.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 1180]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|257063051|ref|YP_003142723.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256790704|gb|ACV21374.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 126

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +       + ++     ++   + K+ + + K G V T RG+ 
Sbjct: 30 LPGQQLPTVRELCAELNVNYNTVSKVYKDIEKDGYVITRRGKG 72


>gi|237798504|ref|ZP_04586965.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|298488394|ref|ZP_07006425.1| Predicted D-glucarate or D-galactorate regulator, GntR family
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157019|gb|EFH98108.1| Predicted D-glucarate or D-galactorate regulator, GntR family
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|331021356|gb|EGI01413.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|261368571|ref|ZP_05981454.1| arabinose metabolism transcriptional repressor [Subdoligranulum
          variabile DSM 15176]
 gi|282569288|gb|EFB74823.1| arabinose metabolism transcriptional repressor [Subdoligranulum
          variabile DSM 15176]
          Length = 354

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L++   H        +++E   +S   +   LQ L + G+++  +G  
Sbjct: 16 LLHQGQHGYKLPTEQELSERYGLSRQTVRHALQMLEQEGLIQRRQGSG 63


>gi|218703729|ref|YP_002411248.1| hypothetical protein ECUMN_0485 [Escherichia coli UMN026]
 gi|293403566|ref|ZP_06647657.1| ybaE protein [Escherichia coli FVEC1412]
 gi|298379178|ref|ZP_06989059.1| ybaE protein [Escherichia coli FVEC1302]
 gi|218430826|emb|CAR11700.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291429419|gb|EFF02439.1| ybaE protein [Escherichia coli FVEC1412]
 gi|298280291|gb|EFI21795.1| ybaE protein [Escherichia coli FVEC1302]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|218688309|ref|YP_002396521.1| hypothetical protein ECED1_0469 [Escherichia coli ED1a]
 gi|218425873|emb|CAR06679.1| conserved hypothetical protein [Escherichia coli ED1a]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|218698643|ref|YP_002406272.1| hypothetical protein ECIAI39_0228 [Escherichia coli IAI39]
 gi|218368629|emb|CAR16368.1| conserved hypothetical protein [Escherichia coli IAI39]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|218553012|ref|YP_002385925.1| hypothetical protein ECIAI1_0449 [Escherichia coli IAI1]
 gi|218359780|emb|CAQ97321.1| conserved hypothetical protein [Escherichia coli IAI1]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|218693908|ref|YP_002401575.1| hypothetical protein EC55989_0459 [Escherichia coli 55989]
 gi|256020417|ref|ZP_05434282.1| hypothetical protein ShiD9_15975 [Shigella sp. D9]
 gi|300924172|ref|ZP_07140164.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 182-1]
 gi|301330688|ref|ZP_07223290.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 78-1]
 gi|218350640|emb|CAU96332.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|300419625|gb|EFK02936.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 182-1]
 gi|300843349|gb|EFK71109.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 78-1]
 gi|320201689|gb|EFW76265.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Escherichia coli EC4100B]
 gi|323945351|gb|EGB41407.1| bacterial extracellular solute-binding protein [Escherichia coli
          H120]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|167949179|ref|ZP_02536253.1| Putative Transcriptional Regulator, ArsR family protein
          [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 126

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++ + +           D    + +I E    S+  + + L+ L    IV + +
Sbjct: 36 ALKAMAHPLRWKILCSLGDSELSVGEIVERTGTSQSNISQHLEQLRNKNIVVSRK 90


>gi|170683749|ref|YP_001742589.1| solute-binding family 5 protein [Escherichia coli SMS-3-5]
 gi|306813087|ref|ZP_07447280.1| hypothetical protein ECNC101_14282 [Escherichia coli NC101]
 gi|170521467|gb|ACB19645.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli SMS-3-5]
 gi|305853850|gb|EFM54289.1| hypothetical protein ECNC101_14282 [Escherichia coli NC101]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|152965925|ref|YP_001361709.1| hypothetical protein Krad_1959 [Kineococcus radiotolerans
          SRS30216]
 gi|151360442|gb|ABS03445.1| Helix-turn-helix type 11 domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 234

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L              +Q+A    +S   + + +  L +AG+ V    G  GG  L
Sbjct: 7  LHALSEELRRAGPRGRTAAQLAGWLEVSTRTVKRDVAALQQAGLPVWAQSGPGGGYVL 64


>gi|153003475|ref|YP_001377800.1| regulatory protein ArsR [Anaeromyxobacter sp. Fw109-5]
 gi|152027048|gb|ABS24816.1| regulatory protein ArsR [Anaeromyxobacter sp. Fw109-5]
          Length = 123

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRP 69
          R ++   A     P R++ +A    +S   + K ++ L +AG+V  T RGR   + L   
Sbjct: 33 RAILDQLAR---GPARVTDVAAPFAMSLNAVSKHIKVLERAGLVRRTRRGREHTLELEPA 89

Query: 70 ADQITILDVVK 80
               + +VV+
Sbjct: 90 P----LREVVR 96


>gi|117622705|ref|YP_851618.1| hypothetical protein APECO1_1566 [Escherichia coli APEC O1]
 gi|218557355|ref|YP_002390268.1| hypothetical protein ECS88_0442 [Escherichia coli S88]
 gi|227884544|ref|ZP_04002349.1| solute-binding family 5 protein [Escherichia coli 83972]
 gi|300987955|ref|ZP_07178471.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 45-1]
 gi|301049652|ref|ZP_07196601.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 185-1]
 gi|115511829|gb|ABI99903.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218364124|emb|CAR01789.1| conserved hypothetical protein [Escherichia coli S88]
 gi|227838630|gb|EEJ49096.1| solute-binding family 5 protein [Escherichia coli 83972]
 gi|294492028|gb|ADE90784.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli IHE3034]
 gi|300298589|gb|EFJ54974.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 185-1]
 gi|300407625|gb|EFJ91163.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 45-1]
 gi|307552352|gb|ADN45127.1| putative extracellular solute-binding protein YbaE [Escherichia
          coli ABU 83972]
 gi|307628085|gb|ADN72389.1| hypothetical protein UM146_15130 [Escherichia coli UM146]
 gi|315289837|gb|EFU49227.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 110-3]
 gi|315294221|gb|EFU53572.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 153-1]
 gi|323952943|gb|EGB48811.1| extracellular solute-binding protein [Escherichia coli H252]
 gi|323958638|gb|EGB54341.1| extracellular solute-binding protein [Escherichia coli H263]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|91209519|ref|YP_539505.1| hypothetical protein UTI89_C0473 [Escherichia coli UTI89]
 gi|237707560|ref|ZP_04538041.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91071093|gb|ABE05974.1| hypothetical protein YbaE [Escherichia coli UTI89]
 gi|226898770|gb|EEH85029.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 571

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88

Query: 81 ATE 83
          A E
Sbjct: 89 ALE 91


>gi|74311025|ref|YP_309444.1| hypothetical protein SSON_0433 [Shigella sonnei Ss046]
 gi|73854502|gb|AAZ87209.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323164248|gb|EFZ50055.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Shigella sonnei 53G]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|33593487|ref|NP_881131.1| heat-inducible transcription repressor [Bordetella pertussis
          Tohama I]
 gi|33598007|ref|NP_885650.1| heat-inducible transcription repressor [Bordetella parapertussis
          12822]
 gi|33602913|ref|NP_890473.1| heat-inducible transcription repressor [Bordetella bronchiseptica
          RB50]
 gi|46576476|sp|Q7VVX7|HRCA_BORPE RecName: Full=Heat-inducible transcription repressor hrcA
 gi|46576485|sp|Q7W514|HRCA_BORPA RecName: Full=Heat-inducible transcription repressor hrcA
 gi|46576493|sp|Q7WGH9|HRCA_BORBR RecName: Full=Heat-inducible transcription repressor hrcA
 gi|33568544|emb|CAE34302.1| heat-inducible transcription repressor [Bordetella bronchiseptica
          RB50]
 gi|33572843|emb|CAE42776.1| heat-inducible transcription repressor [Bordetella pertussis
          Tohama I]
 gi|33574436|emb|CAE38774.1| heat-inducible transcription repressor [Bordetella parapertussis]
 gi|332382895|gb|AEE67742.1| heat-inducible transcription repressor [Bordetella pertussis CS]
          Length = 334

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 21/46 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++ L+   I +  P     +++   +S   +  ++  L + G++ +
Sbjct: 9  LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 54


>gi|32474234|ref|NP_867228.1| ribonuclease BN [Rhodopirellula baltica SH 1]
 gi|32444772|emb|CAD74773.1| probable ribonuclease BN [Rhodopirellula baltica SH 1]
          Length = 577

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI---VETVRGRRGGVRLCRPAD 71
           +  A          ++++   +S   + ++   L++A     V T  G+   + L RPAD
Sbjct: 444 VAIAFAEGEAVGRQELSDRLGLSSRVVHEMETRLIEANFLRRVVTGAGQENQLTLARPAD 503

Query: 72  QITILDVVK 80
            I + +V++
Sbjct: 504 NILLAEVMR 512


>gi|16128430|ref|NP_414979.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli str. K-12 substr.
          MG1655]
 gi|89107315|ref|AP_001095.1| predicted transporter subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|170080031|ref|YP_001729351.1| ABC transporter periplasmic-binding protein [Escherichia coli
          str. K-12 substr. DH10B]
 gi|238899733|ref|YP_002925529.1| putative transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli BW2952]
 gi|256023936|ref|ZP_05437801.1| putative transporter subunit: periplasmic-binding component of
          ABC superfamily protein [Escherichia sp. 4_1_40B]
 gi|300947902|ref|ZP_07162050.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 116-1]
 gi|301647371|ref|ZP_07247183.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 146-1]
 gi|307137090|ref|ZP_07496446.1| putative transporter subunit: periplasmic-binding component of
          ABC superfamily protein [Escherichia coli H736]
 gi|331640965|ref|ZP_08342100.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli H736]
 gi|2506605|sp|P46890|YBAE_ECOLI RecName: Full=Uncharacterized protein ybaE
 gi|1580716|dbj|BAA11649.1| YbaE [Escherichia coli W3110]
 gi|1773129|gb|AAB40201.1| hypothetical protein [Escherichia coli]
 gi|1786650|gb|AAC73548.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli str. K-12 substr.
          MG1655]
 gi|85674585|dbj|BAE76225.1| predicted transporter subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|169887866|gb|ACB01573.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238863245|gb|ACR65243.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli BW2952]
 gi|300452502|gb|EFK16122.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 116-1]
 gi|301074516|gb|EFK89322.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 146-1]
 gi|315616614|gb|EFU97231.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli 3431]
 gi|323943252|gb|EGB39408.1| extracellular solute-binding protein [Escherichia coli E482]
 gi|331037763|gb|EGI09983.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli H736]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|1019765|emb|CAA91182.1| ybaE [Escherichia coli K-12]
          Length = 358

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|84502318|ref|ZP_01000466.1| putative transcription regulator protein [Oceanicola batsensis
          HTCC2597]
 gi|84389678|gb|EAQ02397.1| putative transcription regulator protein [Oceanicola batsensis
          HTCC2597]
          Length = 156

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +  A+H D       +A+   +S+  L++ L+ L  AGI++  R
Sbjct: 10 LLMALHADASASQRALADRIGLSQNALWRRLKRLESAGIIKGSR 53


>gi|157159972|ref|YP_001457290.1| solute-binding family 5 protein [Escherichia coli HS]
 gi|188493569|ref|ZP_03000839.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 53638]
 gi|312970542|ref|ZP_07784723.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli 1827-70]
 gi|157065652|gb|ABV04907.1| bacterial extracellular solute-binding proteins, family 5
          [Escherichia coli HS]
 gi|188488768|gb|EDU63871.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 53638]
 gi|310337191|gb|EFQ02329.1| bacterial extracellular solute-binding s, family 5 Middle family
          protein [Escherichia coli 1827-70]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|157155849|ref|YP_001461632.1| solute-binding family 5 protein [Escherichia coli E24377A]
 gi|157077879|gb|ABV17587.1| bacterial extracellular solute-binding proteins, family 5
          [Escherichia coli E24377A]
 gi|324116933|gb|EGC10846.1| extracellular solute-binding protein [Escherichia coli E1167]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|82542933|ref|YP_406880.1| hypothetical protein SBO_0339 [Shigella boydii Sb227]
 gi|187730849|ref|YP_001879156.1| extracellular solute-binding protein [Shigella boydii CDC
          3083-94]
 gi|191168229|ref|ZP_03030023.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli B7A]
 gi|193064173|ref|ZP_03045257.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli E22]
 gi|193067556|ref|ZP_03048523.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli E110019]
 gi|194429027|ref|ZP_03061559.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli B171]
 gi|260842646|ref|YP_003220424.1| putative transporter subunit [Escherichia coli O103:H2 str.
          12009]
 gi|293418516|ref|ZP_06660951.1| ybaE protein [Escherichia coli B088]
 gi|300820309|ref|ZP_07100461.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 119-7]
 gi|300903287|ref|ZP_07121215.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 84-1]
 gi|301301596|ref|ZP_07207731.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 124-1]
 gi|307312177|ref|ZP_07591813.1| extracellular solute-binding protein family 5 [Escherichia coli
          W]
 gi|309794822|ref|ZP_07689243.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 145-7]
 gi|331666801|ref|ZP_08367675.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli TA271]
 gi|331676117|ref|ZP_08376829.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli H591]
 gi|81244344|gb|ABB65052.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187427841|gb|ACD07115.1| bacterial extracellular solute-binding protein, family 5
          [Shigella boydii CDC 3083-94]
 gi|190901689|gb|EDV61444.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli B7A]
 gi|192929202|gb|EDV82812.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli E22]
 gi|192958968|gb|EDV89404.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli E110019]
 gi|194412964|gb|EDX29254.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli B171]
 gi|257757793|dbj|BAI29290.1| predicted transporter subunit [Escherichia coli O103:H2 str.
          12009]
 gi|291325044|gb|EFE64459.1| ybaE protein [Escherichia coli B088]
 gi|300404582|gb|EFJ88120.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 84-1]
 gi|300527094|gb|EFK48163.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 119-7]
 gi|300843093|gb|EFK70853.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 124-1]
 gi|306907679|gb|EFN38181.1| extracellular solute-binding protein family 5 [Escherichia coli
          W]
 gi|308121475|gb|EFO58737.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 145-7]
 gi|309700706|emb|CBJ00002.1| putative substrate-binding protein [Escherichia coli ETEC H10407]
 gi|315059725|gb|ADT74052.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli W]
 gi|315256273|gb|EFU36241.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 85-1]
 gi|320176588|gb|EFW51632.1| Oligopeptide ABC transporter, periplasmic oligopeptide-binding
          protein OppA [Shigella dysenteriae CDC 74-1112]
 gi|323160444|gb|EFZ46392.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli E128010]
 gi|323170532|gb|EFZ56182.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli LT-68]
 gi|323184724|gb|EFZ70095.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 1357]
 gi|323379710|gb|ADX51978.1| extracellular solute-binding protein family 5 [Escherichia coli
          KO11]
 gi|323938631|gb|EGB34880.1| bacterial extracellular solute-binding protein [Escherichia coli
          E1520]
 gi|324016694|gb|EGB85913.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 117-3]
 gi|331066025|gb|EGI37909.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli TA271]
 gi|331076175|gb|EGI47457.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli H591]
 gi|332098590|gb|EGJ03556.1| bacterial extracellular solute-binding protein, family 5
          [Shigella boydii 3594-74]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|317490089|ref|ZP_07948578.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|316910794|gb|EFV32414.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
          Length = 128

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++A    ++   + K+ Q L   G++ + RG+R
Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75


>gi|300786195|ref|YP_003766486.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299795709|gb|ADJ46084.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            + +A+   ++   +   +  L + G  VE   G +GG RL 
Sbjct: 22 TGADLADRLGVTARTVRTDIGKLRELGYPVEAAPGVQGGYRLG 64


>gi|289168854|ref|YP_003447123.1| Zn(2+)-responsive AdcR transcriptional repressor [Streptococcus
          mitis B6]
 gi|303259662|ref|ZP_07345638.1| adc operon repressor AdcR [Streptococcus pneumoniae SP-BS293]
 gi|303264565|ref|ZP_07350484.1| adc operon repressor AdcR [Streptococcus pneumoniae BS397]
 gi|307707837|ref|ZP_07644314.1| putative transcriptional repressor [Streptococcus mitis NCTC
          12261]
 gi|307711164|ref|ZP_07647586.1| putative transcriptional repressor [Streptococcus mitis SK321]
 gi|288908421|emb|CBJ23263.1| Zn(2+)-responsive AdcR transcriptional repressor [Streptococcus
          mitis B6]
 gi|302639214|gb|EFL69673.1| adc operon repressor AdcR [Streptococcus pneumoniae SP-BS293]
 gi|302645935|gb|EFL76163.1| adc operon repressor AdcR [Streptococcus pneumoniae BS397]
 gi|307616097|gb|EFN95293.1| putative transcriptional repressor [Streptococcus mitis NCTC
          12261]
 gi|307617126|gb|EFN96304.1| putative transcriptional repressor [Streptococcus mitis SK321]
          Length = 146

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|259489657|tpe|CBF90109.1| TPA: toxin biosynthesis regulatory protein AflJ, putative
           (AFU_orthologue; AFUA_4G14550) [Aspergillus nidulans
           FGSC A4]
          Length = 479

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
               I  +AE   + E  L +I++    AG ++
Sbjct: 103 GTVPIKDVAELAGVPETHLSRIIRMTATAGFLD 135


>gi|295399011|ref|ZP_06808993.1| transcriptional regulator, GntR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312110383|ref|YP_003988699.1| GntR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978477|gb|EFG54073.1| transcriptional regulator, GntR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215484|gb|ADP74088.1| transcriptional regulator, GntR family [Geobacillus sp. Y4.1MC1]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +          ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 27 LQPGEMIPSERELAETYDISRMTVRQAINNLVNDGYLVRKRGKG 70


>gi|229491070|ref|ZP_04384901.1| regulatory protein, ArsR [Rhodococcus erythropolis SK121]
 gi|229322051|gb|EEN87841.1| regulatory protein, ArsR [Rhodococcus erythropolis SK121]
          Length = 140

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          D    ++++AE        + + L  L  A +V T R
Sbjct: 41 DRECSVNELAERVGKPAPSVSQHLAKLRMARLVRTRR 77


>gi|291536454|emb|CBL09566.1| Transcriptional regulators [Roseburia intestinalis M50/1]
 gi|291538676|emb|CBL11787.1| Transcriptional regulators [Roseburia intestinalis XB6B4]
          Length = 147

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 9  YGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          YG+R +    +Y   H    +    + E   +S+  + K +  L + G +E
Sbjct: 29 YGLRHVELDILYLISHEKQKDTAKDLIEIQHLSKAHISKSVDNLKQHGYIE 79


>gi|197124386|ref|YP_002136337.1| hypothetical protein AnaeK_4003 [Anaeromyxobacter sp. K]
 gi|196174235|gb|ACG75208.1| Helix-turn-helix type 11 domain protein [Anaeromyxobacter sp. K]
          Length = 221

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             +QIAE   ++   +++ L  L  A + +   +GR GG  L R
Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLHAEQGRGGGYALDR 65


>gi|145592011|ref|YP_001154013.1| transcriptional regulator, TrmB [Pyrobaculum arsenaticum DSM
          13514]
 gi|145283779|gb|ABP51361.1| transcriptional regulator, TrmB [Pyrobaculum arsenaticum DSM
          13514]
          Length = 239

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PA 70
          +Y A+         ++++   I    ++  L+ L + G++       GGVR  +    P 
Sbjct: 20 IYLALVERGEMTARELSDLLGIPYTKIYAHLERLERLGLIT----PTGGVRPAKFRATPP 75

Query: 71 DQITILDVVKAT 82
           +     V +  
Sbjct: 76 VE-----VYRIL 82


>gi|172060638|ref|YP_001808290.1| IclR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993155|gb|ACB64074.1| transcriptional regulator, IclR family [Burkholderia ambifaria
           MC40-6]
          Length = 247

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                + AT+    +      H     L  +   T+VL K   A    L       +V +
Sbjct: 71  AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQGASVTYL------DVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|110808146|ref|YP_691666.1| hypothetical protein SFV_4388 [Shigella flexneri 5 str. 8401]
 gi|110617694|gb|ABF06361.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 231

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGVLTQV---GNDYVIARKPD 72


>gi|23011566|ref|ZP_00051889.1| COG0664: cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases
           [Magnetospirillum magnetotacticum MS-1]
          Length = 263

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           P     +AE   +   +L + L+ L + G+++  RGR
Sbjct: 172 PVTHEVLAELLGVQRSYLTRTLRTLQQQGLIQVRRGR 208


>gi|327308844|ref|XP_003239113.1| hypothetical protein TERG_01097 [Trichophyton rubrum CBS 118892]
 gi|326459369|gb|EGD84822.1| hypothetical protein TERG_01097 [Trichophyton rubrum CBS 118892]
          Length = 780

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +++++     + YP R+ + A+    S   + +I   L K G +E   G +
Sbjct: 515 RQALKIII----EDGYPLRVKEFAQRLHCSGNEVVQITDLLRKNGFLEPTPGSK 564


>gi|325965395|ref|YP_004243300.1| ArsR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471482|gb|ADX75166.1| transcriptional regulator, ArsR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 108

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 19/104 (18%)

Query: 9   YGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
           Y +      R+L+  A    YP   S +A+   +S   +   L  L   G+V  V  GRR
Sbjct: 15  YAVSDPTRARILLALADAPAYP---SDLADTLSVSRQSMSNHLTCLRGCGLVVAVPDGRR 71

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
               L        +   ++         +        C   G+C
Sbjct: 72  TRYELA----DARLGHAIRDLLGVVLAVD-----PACCAPDGTC 106


>gi|320322584|gb|EFW78677.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320330163|gb|EFW86149.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330875401|gb|EGH09550.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 228

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|212635256|ref|YP_002311781.1| AraC family transcriptional regulator [Shewanella piezotolerans
           WP3]
 gi|212556740|gb|ACJ29194.1| Transcriptional regulator, AraC family [Shewanella piezotolerans
           WP3]
          Length = 302

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           +L Y A + D    I  +A+   +   ++ K+ Q
Sbjct: 193 ILKYIADNYDQKITIDDVAKLTGLHPNYVMKLFQ 226


>gi|153008303|ref|YP_001369518.1| GntR family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151560191|gb|ABS13689.1| putative transcriptional regulator, GntR family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AEA  +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAEAMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|325261217|ref|ZP_08127955.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. D5]
 gi|324032671|gb|EGB93948.1| biotin-[acetyl-CoA-carboxylase] ligase [Clostridium sp. D5]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKATE 83
              Q+ E   +S   ++K +  L + G  VE VR R  G  +    D I+  ++V   +
Sbjct: 16 VSGQQLCEKLGVSRTAVWKAINQLKEEGYQVEAVRNR--GYHIVESPDVISKEEIVSMID 73

Query: 84 ESFF 87
           ++ 
Sbjct: 74 TNWA 77


>gi|320335394|ref|YP_004172105.1| 4-alpha-glucanotransferase [Deinococcus maricopensis DSM 21211]
 gi|319756683|gb|ADV68440.1| 4-alpha-glucanotransferase [Deinococcus maricopensis DSM 21211]
          Length = 650

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 52/145 (35%)

Query: 10  GIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRR 61
            IR   L+  A+  D P    Q+  A  ++E  L      L   G+          RG  
Sbjct: 508 AIRPNALLALAL-PDTPATAEQLDAALRVAETHL------LTPLGLRTLSPEDAAYRGAY 560

Query: 62  GGVRLCRPAD--QITI---------------LDVVKATEESFFVAECFASHKIDCPLVGS 104
           GG RL R A   Q T+                DVV+A                       
Sbjct: 561 GGHRLVRDAAYHQGTVWPWPLGAYVTLLLRRGDVVRA-------------------RWAL 601

Query: 105 CGLTSVLRKA-LNAFFDVLTQYSIE 128
            GL + L +A +    +V    ++ 
Sbjct: 602 AGLRAHLWEAGVGGVSEVFAGTTLA 626


>gi|296115392|ref|ZP_06834028.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          hansenii ATCC 23769]
 gi|295978053|gb|EFG84795.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          hansenii ATCC 23769]
          Length = 117

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + +      H         +A    + +  +   L  L +AG++ + R
Sbjct: 13 LSQSTR--LEIFRLLVRHEPDGLPAGDVARHLDVPQNTISAHLATLTRAGLLTSQR 66


>gi|253581181|ref|ZP_04858439.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847538|gb|EES75510.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 363

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          AI          ++++   +S   + K L  L + G VE   GR 
Sbjct: 24 AIRPGEKLPSENELSQKYSLSRHTVRKALGILEQDGYVEAFHGRG 68


>gi|229822382|ref|YP_002883908.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
 gi|229568295|gb|ACQ82146.1| Helix-turn-helix type 11 domain protein [Beutenbergia cavernae
          DSM 12333]
          Length = 260

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +A    +SE  + + +  L +AG+ +    G  GG  L   A 
Sbjct: 27 LARELEVSERTVKRDIAALQQAGLPIWAQSGPGGGYVLAGSAS 69


>gi|217069793|gb|ACJ83258.1| transcriptional regulator [Achromobacter sp. SY8]
          Length = 151

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 27/114 (23%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           L++ T   + +  +             IAE        + + L  L +AG++   RG   
Sbjct: 36  LSQPTR--LEIFRFLMAREPEGAPAGLIAETVEGPHNTVSQHLSVLARAGLI---RG--- 87

Query: 63  GVRLCRPADQITILDVVKA---TEE---SFFVAECFASHKIDC-----PLVGSC 105
                R    I    + +A         SF + +C   H   C      L G C
Sbjct: 88  ----DRQGRSI----IYRADVGVMGTLMSFMLTDCCHGHPEACAPVIAALAGHC 133


>gi|254426650|ref|ZP_05040364.1| transcriptional regulator, ArsR family protein [Synechococcus sp.
          PCC 7335]
 gi|196187402|gb|EDX82370.1| transcriptional regulator, ArsR family protein [Synechococcus sp.
          PCC 7335]
          Length = 107

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R L+      + P    Q+A    +S   + + L  L K G+V   R GR+   RL    
Sbjct: 20 RSLLDHLQKGEQPV--KQLAAPFDMSLPAISQHLSVLCKVGLVTQRREGRQRFYRLTPEP 77

Query: 71 -DQIT 74
            QI+
Sbjct: 78 LKQIS 82


>gi|167771693|ref|ZP_02443746.1| hypothetical protein ANACOL_03065 [Anaerotruncus colihominis DSM
          17241]
 gi|167666333|gb|EDS10463.1| hypothetical protein ANACOL_03065 [Anaerotruncus colihominis DSM
          17241]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +       +AE+  +S   + + L+ L + G++++  G  GG  + +P
Sbjct: 38 GERLPSEQALAESFGVSRNVMRESLKLLKERGLIDSRMG--GGSYITKP 84


>gi|171186382|ref|YP_001795301.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta]
 gi|170935594|gb|ACB40855.1| transcriptional regulator, TrmB [Thermoproteus neutrophilus V24Sta]
          Length = 116

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R ++            S+I +   + +  + K L+ L +AG VE   RGR   V L R  
Sbjct: 51  RAILRLLEERQGVVYQSEIVKELGLPKSTVHKALRRLSEAGYVEIQKRGRLNLVVLKRAT 110

Query: 71  DQIT 74
            + +
Sbjct: 111 SEAS 114


>gi|114800550|ref|YP_760335.1| ArsR family transcriptional regulator [Hyphomonas neptunium ATCC
          15444]
 gi|114740724|gb|ABI78849.1| transcriptional regulator, ArsR family [Hyphomonas neptunium ATCC
          15444]
          Length = 93

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+ + CA+ ++    ++Q+A+    S+  + + L  L  AG+VE+ R
Sbjct: 20 RLKIMCAL-SEGEQPVNQLADMTGQSQSAVSQHLAKLRAAGLVESRR 65


>gi|325523665|gb|EGD01937.1| IclR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 269

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|317402177|gb|EFV82768.1| heat-inducible transcription repressor hrcA [Achromobacter
          xylosoxidans C54]
          Length = 334

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 21/46 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          ++ L+   I +  P     +++   +S   +  ++  L + G++ +
Sbjct: 9  LKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHS 54


>gi|302556419|ref|ZP_07308761.1| GntR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302474037|gb|EFL37130.1| GntR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 126

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A   +      ++AE+  ++   + +  Q L   G++E  RGR 
Sbjct: 30 AAPGERLPPAREVAESLGVNVHTVLRGYQRLRDEGLIELRRGRG 73


>gi|297162769|gb|ADI12481.1| putative transcriptional regulator, ArsR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 361

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
            P+  S++A    +S   + + L  L +AG++ + R GR     L  P
Sbjct: 299 GPHTTSELAHTWELSPPEVSRHLAVLRRAGLLTSRRHGRYVRYTLNLP 346


>gi|229916263|ref|YP_002884909.1| manganese transport transcriptional regulator [Exiguobacterium sp.
           AT1b]
 gi|229467692|gb|ACQ69464.1| iron (metal) dependent repressor, DtxR family [Exiguobacterium sp.
           AT1b]
          Length = 142

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 21/103 (20%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
           +Y  +      R+S IAE   +    + K++Q L +          G++ T +G++ G R
Sbjct: 13  IYLLMSEKGYARVSDIAEHLGVHPSSVTKMVQKLDREEYLVYEKYRGLMLTKKGQKVGKR 72

Query: 66  LC-RPA------DQITI--LDVVKATEESFFVAECFASHKIDC 99
           L  R A        I +   DV +  E    +    +S+ +DC
Sbjct: 73  LVERHAMLESFLRLIGVDEADVYEDVEG---IEHHLSSNTLDC 112


>gi|257388734|ref|YP_003178507.1| iron (metal) dependent repressor, DtxR family [Halomicrobium
          mukohataei DSM 12286]
 gi|257171041|gb|ACV48800.1| iron (metal) dependent repressor, DtxR family [Halomicrobium
          mukohataei DSM 12286]
          Length = 227

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 3  LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          L+ +  DY ++ L       +     S +A+A  ++      +L  L  AG VE  R + 
Sbjct: 2  LSAKMEDY-LKALYQLQRDEEGAVSTSSLADALDVTPPTASSMLDTLADAGFVE--REKY 58

Query: 62 GGVRLCRPADQITILDVVK 80
           G  L    + + + +VV+
Sbjct: 59 KGAHLTPEGETVAL-EVVR 76


>gi|170720782|ref|YP_001748470.1| GntR domain-containing protein [Pseudomonas putida W619]
 gi|169758785|gb|ACA72101.1| GntR domain protein [Pseudomonas putida W619]
          Length = 236

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           IR  +     A     P    Q+AE   +S   + + +  L   G++   RG
Sbjct: 17 AIRAEIDSGRLAAEARLP-TEQQLAEQLNVSRSVVREAVAQLKADGVLIARRG 68


>gi|118576521|ref|YP_876264.1| biotin-(acetyl-CoA carboxylase) ligase [Cenarchaeum symbiosum A]
 gi|118195042|gb|ABK77960.1| biotin-(acetyl-CoA carboxylase) ligase [Cenarchaeum symbiosum A]
          Length = 323

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  T R+   +RVL               +A    IS + ++K ++ +   G  VE+  G
Sbjct: 1  MICTARSRGFVRVLDILKRAGGRYVSGPSMAAELGISRVAVWKHVRKIRSFGYEVES--G 58

Query: 60 RRGGVRLC 67
          RR G RL 
Sbjct: 59 RRLGYRLA 66


>gi|221066495|ref|ZP_03542600.1| transcriptional regulator, GntR family with aminotransferase
          domain [Comamonas testosteroni KF-1]
 gi|220711518|gb|EED66886.1| transcriptional regulator, GntR family with aminotransferase
          domain [Comamonas testosteroni KF-1]
          Length = 495

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  +AE+  +S   + +    L   G+V++ RG  
Sbjct: 61 SVRALAESAGVSRDTVVQAYDKLAAQGLVQSRRGSG 96


>gi|15901982|ref|NP_346586.1| adc operon repressor AdcR [Streptococcus pneumoniae TIGR4]
 gi|111658284|ref|ZP_01408975.1| hypothetical protein SpneT_02000553 [Streptococcus pneumoniae
          TIGR4]
 gi|116516635|ref|YP_817386.1| adc operon repressor AdcR [Streptococcus pneumoniae D39]
 gi|148988814|ref|ZP_01820229.1| adc operon repressor AdcR [Streptococcus pneumoniae SP6-BS73]
 gi|148991975|ref|ZP_01821749.1| adc operon repressor AdcR [Streptococcus pneumoniae SP9-BS68]
 gi|149003028|ref|ZP_01827937.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS69]
 gi|149006850|ref|ZP_01830531.1| adc operon repressor AdcR [Streptococcus pneumoniae SP18-BS74]
 gi|149012038|ref|ZP_01833186.1| adc operon repressor AdcR [Streptococcus pneumoniae SP19-BS75]
 gi|149020086|ref|ZP_01835060.1| adc operon repressor AdcR [Streptococcus pneumoniae SP23-BS72]
 gi|168484001|ref|ZP_02708953.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC1873-00]
 gi|168486276|ref|ZP_02710784.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC1087-00]
 gi|168489242|ref|ZP_02713441.1| putative transcriptional repressor [Streptococcus pneumoniae
          SP195]
 gi|168494070|ref|ZP_02718213.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC3059-06]
 gi|168576045|ref|ZP_02721950.1| putative transcriptional repressor [Streptococcus pneumoniae
          MLV-016]
 gi|169833647|ref|YP_001695528.1| putative transcriptional repressor [Streptococcus pneumoniae
          Hungary19A-6]
 gi|194398300|ref|YP_002038763.1| MarR family transcriptional regulator [Streptococcus pneumoniae
          G54]
 gi|225855665|ref|YP_002737177.1| putative transcriptional repressor [Streptococcus pneumoniae JJA]
 gi|225861990|ref|YP_002743499.1| putative transcriptional repressor [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237649336|ref|ZP_04523588.1| adc operon repressor AdcR [Streptococcus pneumoniae CCRI 1974]
 gi|237821949|ref|ZP_04597794.1| adc operon repressor AdcR [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230551|ref|ZP_06964232.1| adc operon repressor AdcR [Streptococcus pneumoniae str. Canada
          MDR_19F]
 gi|298255415|ref|ZP_06979001.1| adc operon repressor AdcR [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|307068789|ref|YP_003877755.1| transcriptional regulator [Streptococcus pneumoniae AP200]
 gi|3758892|emb|CAA96184.1| AdcR protein [Streptococcus pneumoniae]
 gi|14973684|gb|AAK76226.1| adc operon repressor AdcR [Streptococcus pneumoniae TIGR4]
 gi|116077211|gb|ABJ54931.1| adc operon repressor AdcR [Streptococcus pneumoniae D39]
 gi|147758769|gb|EDK65765.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS69]
 gi|147761451|gb|EDK68416.1| adc operon repressor AdcR [Streptococcus pneumoniae SP18-BS74]
 gi|147763993|gb|EDK70926.1| adc operon repressor AdcR [Streptococcus pneumoniae SP19-BS75]
 gi|147925625|gb|EDK76701.1| adc operon repressor AdcR [Streptococcus pneumoniae SP6-BS73]
 gi|147929024|gb|EDK80035.1| adc operon repressor AdcR [Streptococcus pneumoniae SP9-BS68]
 gi|147930764|gb|EDK81745.1| adc operon repressor AdcR [Streptococcus pneumoniae SP23-BS72]
 gi|168996149|gb|ACA36761.1| putative transcriptional repressor [Streptococcus pneumoniae
          Hungary19A-6]
 gi|172042708|gb|EDT50754.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC1873-00]
 gi|183570699|gb|EDT91227.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC1087-00]
 gi|183572230|gb|EDT92758.1| putative transcriptional repressor [Streptococcus pneumoniae
          SP195]
 gi|183575844|gb|EDT96372.1| putative transcriptional repressor [Streptococcus pneumoniae
          CDC3059-06]
 gi|183578048|gb|EDT98576.1| putative transcriptional repressor [Streptococcus pneumoniae
          MLV-016]
 gi|194357967|gb|ACF56415.1| transcriptional regulator, MarR family [Streptococcus pneumoniae
          G54]
 gi|225722232|gb|ACO18085.1| putative transcriptional repressor [Streptococcus pneumoniae JJA]
 gi|225726478|gb|ACO22329.1| putative transcriptional repressor [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|301795088|emb|CBW37557.1| MarR-family regulatory protein [Streptococcus pneumoniae INV104]
 gi|301802838|emb|CBW35616.1| MarR-family regulatory protein [Streptococcus pneumoniae INV200]
 gi|306410326|gb|ADM85753.1| Transcriptional regulator [Streptococcus pneumoniae AP200]
 gi|327388911|gb|EGE87259.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA04375]
 gi|332071249|gb|EGI81744.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA17545]
 gi|332071442|gb|EGI81936.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA41301]
 gi|332071609|gb|EGI82102.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA17570]
 gi|332198592|gb|EGJ12675.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA41317]
 gi|332198789|gb|EGJ12871.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA47368]
 gi|332198991|gb|EGJ13072.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Streptococcus pneumoniae GA47901]
          Length = 146

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|323358535|ref|YP_004224931.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274906|dbj|BAJ75051.1| transcriptional regulator [Microbacterium testaceum StLB037]
          Length = 366

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          R  +  A+H+D   RISQ+ E   ++ + L + L  L K G++   R   GG
Sbjct: 15 RAHILSALHSDGAVRISQLTEDLGVATVTLRRDLAQLEKEGVL---RRVHGG 63


>gi|299771802|ref|YP_003733828.1| Pca operon regulatory protein [Acinetobacter sp. DR1]
 gi|298701890|gb|ADI92455.1| Pca operon regulatory protein [Acinetobacter sp. DR1]
          Length = 257

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV   +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRPVINVDIICEELGLSKPTSYRYLKELVSTDLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD + + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|266620990|ref|ZP_06113925.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
 gi|288867371|gb|EFC99669.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
          Length = 123

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 21/48 (43%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++            + ++A    ++   + K L  L ++GI+ + R
Sbjct: 21 LRIISGIYAAGSRLPSVRELAGEASVNPNTMQKALSELEQSGIIYSQR 68


>gi|261250811|ref|ZP_05943385.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891]
 gi|260937684|gb|EEX93672.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891]
          Length = 338

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +L Y A H++ P     IAE   +   +   + Q 
Sbjct: 204 MLEYIATHHNMPLTTKAIAEHVGLHANYAMNVFQR 238


>gi|271502289|ref|YP_003335315.1| AraC family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345844|gb|ACZ78609.1| transcriptional regulator, AraC family [Dickeya dadantii Ech586]
          Length = 401

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           I+ L+Y   H      + ++AE   IS   L  +L+
Sbjct: 291 IKALLYLGEHFQREVTLIELAENSHISPSHLSYLLK 326


>gi|256389258|ref|YP_003110822.1| HxlR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355484|gb|ACU68981.1| transcriptional regulator, HxlR family [Catenulispora acidiphila
           DSM 44928]
          Length = 153

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 13  VLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGI----VETVRGRRGGVRLC 67
            L+  A+  + P R +++      +SE  L + LQ L + G     V++    +   +L 
Sbjct: 50  ALIMMALR-EGPVRFNELRRRVDGVSEKMLSQGLQALERDGFVAREVQSTMPPKVEYQLT 108

Query: 68  RPADQIT--ILDVVKATEESFFVAE 90
               Q +  + D+V+  E      E
Sbjct: 109 PLGTQTSDRLADLVEFLEGRMPEVE 133


>gi|297566057|ref|YP_003685029.1| GntR family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296850506|gb|ADH63521.1| transcriptional regulator, GntR family [Meiothermus silvanus DSM
          9946]
          Length = 231

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          VL   A     +P   +Q+++   +S +   + LQ L + G +   +G+ 
Sbjct: 10 VLRELAKPQPGFPLSENQLSQRFGVSRMTARRALQELEREGYLSRQQGKG 59


>gi|168211512|ref|ZP_02637137.1| transcription regulator [Clostridium perfringens B str. ATCC
          3626]
 gi|182625025|ref|ZP_02952803.1| transcription regulator [Clostridium perfringens D str. JGS1721]
 gi|170710518|gb|EDT22700.1| transcription regulator [Clostridium perfringens B str. ATCC
          3626]
 gi|177909822|gb|EDT72240.1| transcription regulator [Clostridium perfringens D str. JGS1721]
          Length = 318

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +LM   +H       + +A+   +S   +++ ++ L   GI + T RG  GG++L
Sbjct: 9  ILMLLQVHKQ--LTANDLAKRLEVSVRTIYRDIESLSSLGIPIFTERGTNGGIKL 61


>gi|28871684|ref|NP_794303.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966709|ref|ZP_03394860.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato T1]
 gi|28854936|gb|AAO57998.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928559|gb|EEB62103.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|116623075|ref|YP_825231.1| GntR family transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226237|gb|ABJ84946.1| transcriptional regulator, GntR family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 242

 Score = 34.9 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGV 64
           R L       D     S I +   +S   + + +  L  AG VET  G          G 
Sbjct: 30  RAL----KPGDKLPTESAIMQNFGVSRTVVREAISALQAAGFVETRHGIGTFVLDSPSGF 85

Query: 65  RLCRPADQI-TILDVVKATE 83
                   I T+ D++   E
Sbjct: 86  EFRVEPRSIPTVRDILAMLE 105


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGI 53
           LT + +Y +  L +  +        + I E            I E+++  + + L  AG+
Sbjct: 150 LTAK-EYAV--LEHLVLRAGQVVSKADILEHVWDFAYSGDPNIVEVYVSTLRRKLG-AGL 205

Query: 54  VETVRGRRGGVRLCRP 69
           + TVRG   G  L RP
Sbjct: 206 IRTVRGA--GYLLERP 219


>gi|329847066|ref|ZP_08262094.1| ROK family protein [Asticcacaulis biprosthecum C19]
 gi|328842129|gb|EGF91698.1| ROK family protein [Asticcacaulis biprosthecum C19]
          Length = 377

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRR 61
          +  DY  RV++  AI    P   S++A A  ++   +  I + L++ GIV+    + G R
Sbjct: 3  RAGDYNQRVILQ-AIRAGGPVTRSELAGATGLTHQSVINITRRLMEDGIVQDEGAIIGGR 61

Query: 62 G--GVRLCRPAD 71
          G    RL    D
Sbjct: 62 GQPAARLAVNPD 73


>gi|312141538|ref|YP_004008874.1| gntr family transcriptional regulator [Rhodococcus equi 103S]
 gi|311890877|emb|CBH50196.1| putative GntR family transcriptional regulator [Rhodococcus equi
           103S]
          Length = 272

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 24/136 (17%)

Query: 12  RVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------- 63
           R+L    A   D   + +++ E   ++   L + L+ L   G+V   RG RGG       
Sbjct: 34  RILRGDLA-EGDVLPKEAELREQYPVNVQSLREALRILEAEGLVRVRRGNRGGAVVHRPT 92

Query: 64  ---------VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR 112
                    + L      I   DV +A    E    A C         +V    L ++  
Sbjct: 93  PGNVAYSLSMVLAMSGTDID--DVGRALHEIEPMCAALCAEREDRATEVVP--ILRTLHE 148

Query: 113 KALNAFFDVLTQYSIE 128
           ++L    D++   ++ 
Sbjct: 149 ESLANVDDLVAATTLS 164


>gi|271965797|ref|YP_003339993.1| MarR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270508972|gb|ACZ87250.1| transcriptional regulator, MarR family [Streptosporangium roseum
          DSM 43021]
          Length = 162

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L+  A  +  P  I ++A++   S   + + +  + K  +V +  G 
Sbjct: 47 LIRLA--HTGPLTIRELAKSLNRSHSAISQTIAAMRKEDLVTSEPGP 91


>gi|269125029|ref|YP_003298399.1| GntR family transcriptional regulator [Thermomonospora curvata
          DSM 43183]
 gi|269128713|ref|YP_003302083.1| GntR family transcriptional regulator [Thermomonospora curvata
          DSM 43183]
 gi|268309987|gb|ACY96361.1| transcriptional regulator, GntR family [Thermomonospora curvata
          DSM 43183]
 gi|268313671|gb|ACZ00046.1| transcriptional regulator, GntR family [Thermomonospora curvata
          DSM 43183]
          Length = 272

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILDVV 79
           D     S++A    +S   +   L  L K+G V+T R R G   L  R    IT+ D  
Sbjct: 27 GDRLPTESELAARWKVSTSTVKDALSELRKSGRVQT-RPREGTFVLPRRRPLTITLND-- 83

Query: 80 KATEESFFVAE 90
          +  +     AE
Sbjct: 84 RELDMPQVPAE 94


>gi|269102069|ref|ZP_06154766.1| putative ARAC-type regulatory protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161967|gb|EEZ40463.1| putative ARAC-type regulatory protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 290

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVRGRRGGVRLCRP 69
           + +Y   +   P     IA    +S   L +I +    +  A  +  VR  R    L + 
Sbjct: 185 ICIYIQENFHRPITRETIANRFNVSPNHLSRIFRQQGHMRLADYISWVRIERAKFMLKKY 244

Query: 70  A 70
            
Sbjct: 245 P 245


>gi|257413363|ref|ZP_05591622.1| transcriptional regulator, MarR family [Roseburia intestinalis
          L1-82]
 gi|257203810|gb|EEV02095.1| transcriptional regulator, MarR family [Roseburia intestinalis
          L1-82]
          Length = 148

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 9  YGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          YG+R +    +Y   H    +    + E   +S+  + K +  L + G +E
Sbjct: 30 YGLRHVELDILYLISHEKQKDTAKDLIEIQHLSKAHISKSVDNLKQHGYIE 80


>gi|256042844|ref|ZP_05445790.1| Rrf2 family transcriptional regulator protein [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 42

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 98  DCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
           DC     C +  V+     A  +VL   ++  
Sbjct: 1   DC-NEAECQVRHVMLDVREAIANVLDHRTLAD 31


>gi|239980624|ref|ZP_04703148.1| GntR family transcriptional regulator [Streptomyces albus J1074]
 gi|291452481|ref|ZP_06591871.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291355430|gb|EFE82332.1| GntR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 139

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M +  +T   +R L    +  D      ++ E   I+   + K  + L + G+VE   GR
Sbjct: 16 MQIVLQTKQALR-LGVL-VPGDKLPTAKEVVETAAINPHTVLKAYRELEREGLVELQPGR 73

Query: 61 R 61
           
Sbjct: 74 G 74


>gi|156935946|ref|YP_001439862.1| DNA-binding transcriptional repressor LldR [Cronobacter sakazakii
          ATCC BAA-894]
 gi|156534200|gb|ABU79026.1| hypothetical protein ESA_03840 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 262

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 11 IRVLM-YCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          IR L+    +          Q+A+   +S   L + LQ L++ G++ + RG  
Sbjct: 16 IRALITERGLEAGMRLPSERQLAQELGVSRNSLREALQILIRDGLLISRRGGG 68


>gi|121604496|ref|YP_981825.1| GntR domain-containing protein [Polaromonas naphthalenivorans CJ2]
 gi|120593465|gb|ABM36904.1| transcriptional regulator, GntR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 273

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPAD 71
            D     ++I     +S   + + L  L  +G+V+T  G           G  ++   AD
Sbjct: 51  GDKMPTEAEIMARFDVSRTVVRESLSKLQASGLVKTRHGIGTFVLSPQEAGNFKIA--AD 108

Query: 72  Q-ITILDVVKATE 83
              TI DV+   E
Sbjct: 109 DFATIADVISVLE 121


>gi|330888721|gb|EGH21382.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 223

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|291442709|ref|ZP_06582099.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291345604|gb|EFE72560.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 110

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RVL+  A      +R+  +A+A  I+E  +  I+  L  AG +   R
Sbjct: 19 RVLIALARDPG--SRLRDVADAIDITERAVQLIVADLEAAGYLTRTR 63


>gi|251768321|ref|ZP_04820500.1| transcriptional regulator, IclR family [Burkholderia mallei
          PRL-20]
 gi|243060191|gb|EES42377.1| transcriptional regulator, IclR family [Burkholderia mallei
          PRL-20]
          Length = 180

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A  +D P    ++AE   I +  + +I   LV  G +
Sbjct: 21 ITALAR-GLAVLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSTGFL 70


>gi|268316788|ref|YP_003290507.1| transcriptional regulator, GntR family [Rhodothermus marinus DSM
          4252]
 gi|262334322|gb|ACY48119.1| transcriptional regulator, GntR family [Rhodothermus marinus DSM
          4252]
          Length = 305

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             ++A    IS   + K  Q L   G++ +  GRR    L RP
Sbjct: 37 STRELARQLGISFHTVRKAYQQLEAEGLIHSQSGRR---YLVRP 77


>gi|284034456|ref|YP_003384387.1| GntR family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813749|gb|ADB35588.1| transcriptional regulator, GntR family [Kribbella flavida DSM
          17836]
          Length = 305

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + QIA+   ++     K++  L   G+VET  G  
Sbjct: 22 RPGDRVPSVRQIAQNEGVAISTATKVIARLRDDGLVETTVGSG 64


>gi|237730435|ref|ZP_04560916.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226905974|gb|EEH91892.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 475

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+ +  P    ++A    +S   +   +  L + G +E+  G  
Sbjct: 34 ALRLLILDGRLALDSRLPGE-RELAVVLQVSRTTVASAMAQLREEGYLESRHGSG 87


>gi|206578925|ref|YP_002240059.1| transcriptional regulator, GntR family/aminotransferase family
          protein [Klebsiella pneumoniae 342]
 gi|206567983|gb|ACI09759.1| transcriptional regulator, GntR family/aminotransferase family
          protein [Klebsiella pneumoniae 342]
          Length = 475

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67 CRPADQ 72
                
Sbjct: 93 PERPAD 98


>gi|115265521|dbj|BAF32783.1| transcriptional regulator of GntR family [Pseudomonas syringae pv.
           actinidiae]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|134296313|ref|YP_001120048.1| IclR family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134139470|gb|ABO55213.1| transcriptional regulator, IclR family [Burkholderia
          vietnamiensis G4]
          Length = 269

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|330994447|ref|ZP_08318372.1| Biofilm growth-associated repressor [Gluconacetobacter sp.
          SXCC-1]
 gi|329758447|gb|EGG74966.1| Biofilm growth-associated repressor [Gluconacetobacter sp.
          SXCC-1]
          Length = 134

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM  A   D    + +I     I +  L + L  L +A IV T +
Sbjct: 27 LMVLACLLDGEKSVGEIEARTGIGQPTLSQQLAELRRAEIVVTRK 71


>gi|330465866|ref|YP_004403609.1| regulatory protein arsr [Verrucosispora maris AB-18-032]
 gi|328808837|gb|AEB43009.1| regulatory protein arsr [Verrucosispora maris AB-18-032]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 10  GIRVLM------YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +  L+        A  +D      ++A    IS   + +    L  AG++ + R R 
Sbjct: 254 ALAALLGRTRAAVLAASDDG-CSTGELARRLYISPAAVSQHTTVLRNAGLLASHRDRN 310


>gi|318057232|ref|ZP_07975955.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 410

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   ++   + + +  L + G  + TV+G  GG RL
Sbjct: 26 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 63


>gi|307243819|ref|ZP_07525950.1| transcriptional regulator, DeoR family [Peptostreptococcus
          stomatis DSM 17678]
 gi|306492822|gb|EFM64844.1| transcriptional regulator, DeoR family [Peptostreptococcus
          stomatis DSM 17678]
          Length = 299

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y           +++A+   +S   +++ +  +  AGI +   +G+ GG+ + + 
Sbjct: 8  FRILYYI--LEKEKVTANELADKFEVSVRTIYRDIDSISSAGIPIYATQGKGGGIEIAKD 65


>gi|296535434|ref|ZP_06897627.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
 gi|296264231|gb|EFH10663.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
           49957]
          Length = 119

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 30/111 (27%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R                ++A         +   L  L +AG+V + R  R         
Sbjct: 19  LRAFRLLIRQGPEGLPAGEVARRLGAPHNTISTHLAILTRAGLVASRRESR--------- 69

Query: 71  DQITILDVVKATEE-------SFFVAECFASHKIDC--------PLVGSCG 106
                  V+ A E         F V EC       C        PL   C 
Sbjct: 70  ------QVIYAVEAGGARALIGFLVEECCGGRPEACAPLIEAALPLAACCP 114


>gi|289626657|ref|ZP_06459611.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|289649479|ref|ZP_06480822.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi
          str. 2250]
 gi|330869617|gb|EGH04326.1| transcriptional regulator GntR [Pseudomonas syringae pv. aesculi
          str. 0893_23]
 gi|330987510|gb|EGH85613.1| transcriptional regulator GntR [Pseudomonas syringae pv.
          lachrymans str. M301315]
 gi|331011429|gb|EGH91485.1| transcriptional regulator GntR [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 228

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|289641762|ref|ZP_06473920.1| GntR domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508406|gb|EFD29347.1| GntR domain protein [Frankia symbiont of Datisca glomerata]
          Length = 231

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +++     +S   + + L  L +  ++    G  GGV +  P  Q+ +  V
Sbjct: 38 TELISRFEVSPSVMNEALGILRERDLITVRPGPNGGVFVANPPPQVRLGGV 88


>gi|284042362|ref|YP_003392702.1| ArsR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946583|gb|ADB49327.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM
           14684]
          Length = 141

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
           L       D    + ++AE   +S+  +   L+ L +  +V   R GR    RL
Sbjct: 52  LRLLWALLDGELTVEELAERTELSQSAVSHQLRLLRQGRLVSVRRSGRHAHYRL 105


>gi|257790419|ref|YP_003181025.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|257474316|gb|ACV54636.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
          Length = 128

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++A    ++   + K+ Q L   G++ + RG+R
Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75


>gi|302528243|ref|ZP_07280585.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437138|gb|EFL08954.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 276

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + P  ++++A    +      +ILQ LV+ G VE
Sbjct: 24 GERPLTLAELARRSHVPRSSAHRILQRLVELGWVE 58


>gi|238897128|ref|YP_002921874.1| hypothetical protein KP1_5387 [Klebsiella pneumoniae NTUH-K2044]
 gi|238549456|dbj|BAH65807.1| hypothetical protein KP1_5387 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 232

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 11  IRVLM-YCAIHNDYPNR----ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +R L+   A + +   R    +S I     +S   +  IL  L K G +   RG 
Sbjct: 166 VRTLLTELADYPEAYRRQINVLSFIQRRTNLSRSRIMSILSELRKGGYITVHRGV 220


>gi|258405048|ref|YP_003197790.1| regulatory protein GntR HTH [Desulfohalobium retbaense DSM 5692]
 gi|257797275|gb|ACV68212.1| regulatory protein GntR HTH [Desulfohalobium retbaense DSM 5692]
          Length = 254

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 13 VLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++   +          ++ +   IS   L   L+ L   G+V+T RG  
Sbjct: 26 IVLDLGLEPGDRLPAERRLCQLMHISRTTLRNFLRMLEGRGLVQTKRGSG 75


>gi|289579989|ref|YP_003478455.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii
          ATCC 43099]
 gi|289529542|gb|ADD03893.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii
          ATCC 43099]
          Length = 225

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++ +      +D   + S+IAEA  ++   +  +L+ L   G+V+  R +  GV L 
Sbjct: 8  DY-LKAIYQLQRDHDERVKTSEIAEALDVTSPTVTSMLEKLGDRGLVD--REKYRGVTLT 64

Query: 68 RPADQITILDVVK 80
             + + + +VV+
Sbjct: 65 DEGETVAL-EVVR 76


>gi|111018059|ref|YP_701031.1| GntR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817589|gb|ABG92873.1| transcriptional regulator, GntR family protein [Rhodococcus
          jostii RHA1]
          Length = 247

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            A   D      ++AEA  +S   + + +Q L +AG+VE  +G
Sbjct: 29 DLAA-GDALPSERRLAEAFGVSRPAIREAIQKLAQAGLVEVRQG 71


>gi|92109554|ref|YP_571841.1| ArsR family transcriptional regulator [Nitrobacter hamburgensis
          X14]
 gi|91802636|gb|ABE65009.1| transcriptional regulator, ArsR family [Nitrobacter hamburgensis
          X14]
          Length = 155

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H         IAE        L   L  LV+AG++ + R
Sbjct: 45 LVKHEPVGITAGVIAETVGAPHNTLSTHLAILVRAGLLRSSR 86


>gi|91772993|ref|YP_565685.1| hypothetical protein Mbur_0996 [Methanococcoides burtonii DSM
          6242]
 gi|91712008|gb|ABE51935.1| Hypothetical protein Mbur_0996 [Methanococcoides burtonii DSM
          6242]
          Length = 160

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           IS++AE   IS   L K++Q   + G++ + +
Sbjct: 29 NISELAEEVNISRPTLTKVVQMFSEWGLLLSSK 61


>gi|94313149|ref|YP_586358.1| IclR family transcriptional regulator family [Cupriavidus
          metallidurans CH34]
 gi|93357001|gb|ABF11089.1| transcriptional regulator, IclR family [Cupriavidus metallidurans
          CH34]
          Length = 266

 Score = 34.9 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 11 IRVLMYC-AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +R L    A  +  P    +Q+AE   +    + ++   LV+ G +E   G   G RL 
Sbjct: 22 LRGLNLLRAFVSGAPVLSNAQLAERSGLPRPTVSRLTHSLVEGGYLE-YDGVSKGYRLA 79


>gi|329893889|ref|ZP_08269940.1| transcriptional regulator, AsnC family protein [gamma
          proteobacterium IMCC3088]
 gi|328923408|gb|EGG30724.1| transcriptional regulator, AsnC family protein [gamma
          proteobacterium IMCC3088]
          Length = 158

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M    +TD  +++L      ND     ++IAE   +S+   ++ +Q L  AG  E     
Sbjct: 1  MQELTKTD--LKILELL--QNDSTISTAEIAEHIGLSQSPCWRRIQRLEHAGFFEER--- 53

Query: 61 RGGVRLCRP 69
            G+RL R 
Sbjct: 54 --GIRLNRD 60


>gi|324998000|ref|ZP_08119112.1| oxidoreductase [Pseudonocardia sp. P1]
          Length = 253

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  I +L   A+  +      ++A A  + +   F++L  L + G+VE + G RG  
Sbjct: 13 QSVDRAITLLELMALRGEAGVS--ELAAALDVHKSTAFRLLGALEEHGLVEQI-GDRGKY 69

Query: 65 RLC 67
          RL 
Sbjct: 70 RLG 72


>gi|312966875|ref|ZP_07781093.1| hypothetical protein EC236275_2694 [Escherichia coli 2362-75]
 gi|312288339|gb|EFR16241.1| hypothetical protein EC236275_2694 [Escherichia coli 2362-75]
 gi|323169305|gb|EFZ54981.1| hypothetical protein SS53G_0475 [Shigella sonnei 53G]
 gi|323170041|gb|EFZ55697.1| hypothetical protein ECLT68_5685 [Escherichia coli LT-68]
          Length = 81

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +L Y A +        +IA A       +   L+ L ++G+V     + GG
Sbjct: 1  MTILDYIAANPG--CSSGEIAAALNTPTTTINAELRRLWRSGLVTRKERKTGG 51


>gi|289675955|ref|ZP_06496845.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae
           FF5]
          Length = 230

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|282165035|ref|YP_003357420.1| hypothetical protein MCP_2365 [Methanocella paludicola SANAE]
 gi|282157349|dbj|BAI62437.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 352

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRLCRPA 70
           R++ Y         + S +      S+  L  +L  L + G I++  +G+   +RL RP 
Sbjct: 288 RIVRYLEEAGGQMFQ-SDLVRKTDFSKSKLSMVLSDLKEKGTIIKIKKGKENLIRLNRPP 346

Query: 71  DQ 72
            +
Sbjct: 347 AE 348


>gi|269959308|ref|ZP_06173692.1| hypothetical protein VME_00760 [Vibrio harveyi 1DA3]
 gi|269836010|gb|EEZ90085.1| hypothetical protein VME_00760 [Vibrio harveyi 1DA3]
          Length = 240

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   IS   + K L  L   GIV++  G  
Sbjct: 30 RELAEKYDISRFSVRKALSKLEAIGIVKSKVGSG 63


>gi|255657094|ref|ZP_05402503.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296452073|ref|ZP_06893784.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296879533|ref|ZP_06903515.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259023|gb|EFH05907.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296429471|gb|EFH15336.1| DeoR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 320

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +D      +IAE   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LSSDKKITAKEIAEKLEINIRTVYRYIDVLSASGVPIISDIGHNGGYSL 62


>gi|222084753|ref|YP_002543282.1| sugar transcriptional regulator protein [Agrobacterium
          radiobacter K84]
 gi|221722201|gb|ACM25357.1| sugar transcriptional regulator protein [Agrobacterium
          radiobacter K84]
          Length = 415

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62
          R+++     +   ++ + IA    +S   +  I++ L K G++   E VRGR G
Sbjct: 34 RLVLSLVRRHGALSK-ADIARRSGLSAQTVSVIMRALEKDGLLSRGEPVRGRVG 86


>gi|66047455|ref|YP_237296.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258162|gb|AAY39258.1| regulatory protein, GntR:Bacterial regulatory protein, GntR
           [Pseudomonas syringae pv. syringae B728a]
 gi|330969583|gb|EGH69649.1| transcriptional regulator GntR [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|78047893|ref|YP_364068.1| ArsR family transcriptional regulator [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|121593768|ref|YP_985664.1| ArsR family transcriptional regulator [Acidovorax sp. JS42]
 gi|78036323|emb|CAJ24014.1| transcriptional regulator, ArsR family [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|120605848|gb|ABM41588.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42]
          Length = 117

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L++C      P+ +  IAE+  +S+  +   L+ L  A +V+ VR
Sbjct: 41 LRILLFC---MKGPSAVGDIAESLELSQSLVSHHLRLLRGARLVKGVR 85


>gi|50083397|ref|YP_044907.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp.
          ADP1]
 gi|49529373|emb|CAG67085.1| transcriptional repressor for L-lactate utilization (GntR family)
          [Acinetobacter sp. ADP1]
          Length = 250

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            D      Q+A +  IS   L + +Q L   GI+ + RG
Sbjct: 22 QGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61


>gi|182437449|ref|YP_001825168.1| IclR family transcriptional regulator [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|7341298|gb|AAF61237.1| sporulation protein SsfR [Streptomyces griseus]
 gi|28201177|dbj|BAC56595.1| putative transcriptional regulator [Streptomyces griseus]
 gi|178465965|dbj|BAG20485.1| putative IclR-family transcriptional regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            +R+L     H D      Q+A    +     + +L+ L   G +   R   G   L   
Sbjct: 87  ALRLLEAVGAHRDG-APAKQLAREAGLPLPTAYHLLRTLTHEGYL---RRENGVFLLGAA 142

Query: 70  ADQITIL 76
           A+ +T+ 
Sbjct: 143 AENLTVA 149


>gi|325478982|gb|EGC82084.1| transcriptional regulator, GntR family [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 123

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                +  +A+   ++   + + LQ L + G+ E+ R
Sbjct: 29 GGKILPVRDLAKTYEVNPNTVQRALQELEREGLCESRR 66


>gi|315283549|ref|ZP_07871713.1| helix-turn-helix type 11 domain-containing protein [Listeria
          marthii FSL S4-120]
 gi|313612810|gb|EFR86788.1| helix-turn-helix type 11 domain-containing protein [Listeria
          marthii FSL S4-120]
          Length = 298

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          R+L    +  +     S++AE   +S   +++ ++ L+ AG  V ++ G+ GG 
Sbjct: 5  RILAILVMILERKVLASELAEKFEVSTRTIYRDMETLLYAGFPVVSLPGKNGGF 58


>gi|313142758|ref|ZP_07804951.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131789|gb|EFR49406.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 124

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            QIA+    S   L ++L+   + G+++T +G+
Sbjct: 86  RQIAQKLNTSPESLSRVLREFKEEGLIKTQKGK 118


>gi|302517900|ref|ZP_07270242.1| LOW QUALITY PROTEIN: PdxR [Streptomyces sp. SPB78]
 gi|302426795|gb|EFK98610.1| LOW QUALITY PROTEIN: PdxR [Streptomyces sp. SPB78]
          Length = 512

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 10  GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           GIRVL+   +    P         ++A A  +S   +    + L +AG +E+ RG  
Sbjct: 85  GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 138


>gi|229494944|ref|ZP_04388695.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|229318168|gb|EEN84038.1| DeoR-family transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 322

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +++A+   I+   + + +  L   G  V+   G  GG RL   A+
Sbjct: 22 SGAELADKLAITPRTVRRDVDRLRDLGYPVDATVGVGGGYRLGAGAE 68


>gi|217967027|ref|YP_002352533.1| GntR family transcriptional regulator [Dictyoglomus turgidum DSM
          6724]
 gi|217336126|gb|ACK41919.1| transcriptional regulator, GntR family [Dictyoglomus turgidum DSM
          6724]
          Length = 121

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + ++AE   ++   + K  Q L + GI  T+RG  
Sbjct: 30 GDKLPSVRELAEMLKVNPNTVQKAYQELEREGITYTLRGIG 70


>gi|104781524|ref|YP_608022.1| LexA repressor [Pseudomonas entomophila L48]
 gi|95110511|emb|CAK15219.1| putative LexA repressor 2 [Pseudomonas entomophila L48]
          Length = 202

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 23 YPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           P  ++ IAE     S     K +  L +AG ++    +  G+RL  P
Sbjct: 24 QPPSLADIAERFGFASRSVARKHITALCQAGYIDVTPNQARGIRLAEP 71


>gi|39945744|ref|XP_362409.1| hypothetical protein MGG_07992 [Magnaporthe oryzae 70-15]
 gi|145019225|gb|EDK03453.1| hypothetical protein MGG_07992 [Magnaporthe oryzae 70-15]
          Length = 438

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            A + D P  ++ +A    +    L ++++ +   G +E
Sbjct: 117 MARNGDGPQAVADLAAVLGVDPPLLARVMRHVAAMGYLE 155


>gi|50954561|ref|YP_061849.1| hypothetical protein Lxx08452 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951043|gb|AAT88744.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 112

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR 61
           L+  T  G+  L+      + P   S +AEA  +S   +   L  L   G+VE +  GRR
Sbjct: 21  LSDTTRVGV--LLTL---REAPAFPSDLAEALGVSRQVMSNQLACLRGCGLVEAIPEGRR 75

Query: 62  GGVRLCRPADQIT--ILDVVKATEESFFVAECFASHKIDC 99
              RL      I+  + ++++ T   F    C A  +  C
Sbjct: 76  TWYRLAD--SHISPALDELLRVT--LFIEPGCCAGEECHC 111


>gi|318075230|ref|ZP_07982562.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 413

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   ++   + + +  L + G  + TV+G  GG RL
Sbjct: 29 LAQRLDVTSRTVRRDVDRLRELGYRIATVKGPAGGYRL 66


>gi|313904167|ref|ZP_07837546.1| Helix-turn-helix type 11 domain protein [Eubacterium
          cellulosolvens 6]
 gi|313470969|gb|EFR66292.1| Helix-turn-helix type 11 domain protein [Eubacterium
          cellulosolvens 6]
          Length = 255

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
             +    P    ++A+   +S   ++K +Q L +  I     GR+G   L  P D
Sbjct: 9  DLTLLGGQPVSGQELADRYHVSRNAIWKAIQSLKENNIPIITVGRKG-YAL--PPD 61


>gi|307946677|ref|ZP_07662012.1| ArsR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770341|gb|EFO29567.1| ArsR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 129

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
           R+L+ C +  D    +  +AE   +    + + L  L   G+V T R G     RL    
Sbjct: 38  RLLLMCHMSEDE-CSVGDLAEKTGMRLPTVSQQLSLLRSQGLVATRRDGTTIYYRLASDP 96

Query: 71  -DQI 73
             +I
Sbjct: 97  TREI 100


>gi|226306921|ref|YP_002766881.1| ArsR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226186038|dbj|BAH34142.1| putative ArsR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 140

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          D    ++++AE        + + L  L  A +V T R
Sbjct: 41 DRECSVNELAERVGKPAPSVSQHLAKLRMARLVRTRR 77


>gi|225375156|ref|ZP_03752377.1| hypothetical protein ROSEINA2194_00780 [Roseburia inulinivorans
          DSM 16841]
 gi|225213030|gb|EEG95384.1| hypothetical protein ROSEINA2194_00780 [Roseburia inulinivorans
          DSM 16841]
          Length = 325

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +L       D      ++ E   +S   ++K +  L +AG  +E V+ +  G RL     
Sbjct: 5  ILTLL-RETDGYVSGQELCEKFGVSRTAVWKAINQLKEAGYEIEAVQNK--GYRL----- 56

Query: 72 QITILDVVKATE 83
           +++ D++  +E
Sbjct: 57 -VSVPDILSESE 67


>gi|152991587|ref|YP_001357309.1| hypothetical protein NIS_1848 [Nitratiruptor sp. SB155-2]
 gi|151423448|dbj|BAF70952.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 57

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + D P +  +IAEA  + +  + K+++ L   G +++
Sbjct: 11 NADRPMKSGEIAEALGVDKKEVDKVIKRLKNEGKIDS 47


>gi|148271726|ref|YP_001221287.1| ArsR family transcriptional regulator [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
 gi|147829656|emb|CAN00572.1| transcriptional regulator, ArsR family [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
          Length = 182

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 11 IRVLMYCAIHNDYP---NRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVR 65
          +RVL+      + P     +S++ +   IS+  + K L+ L  +G+V +VR  G+    R
Sbjct: 17 LRVLLDRRAVPEAPTGEISVSELVQTLGISQPTVSKHLRVLRDSGLV-SVREEGQHRYYR 75

Query: 66 LCRPADQ 72
          L     +
Sbjct: 76 LEPAPLE 82


>gi|99082535|ref|YP_614689.1| AraC family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038815|gb|ABF65427.1| transcriptional regulator, AraC family [Ruegeria sp. TM1040]
          Length = 336

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45
           +R +       +YP   +++AE   IS   L ++ 
Sbjct: 228 VRAMAIMEECIEYPLSTAEVAERAGISVRHLERLF 262


>gi|322806430|emb|CBZ03999.1| transcriptional regulator, GntR family domain / Aspartate
          aminotransferase [Clostridium botulinum H04402 065]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|298249483|ref|ZP_06973287.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
 gi|297547487|gb|EFH81354.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
          Length = 129

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M L ++    +R  +      D    + ++     I+   +FK  + L + G+VE+  G
Sbjct: 16 MQLVQQVKRALR--LGLLQPGDQLPTVREVVTMIAINPNTVFKAYRELERDGLVESRPG 72


>gi|291520864|emb|CBK79157.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Coprococcus
          catus GD/7]
          Length = 325

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPADQITILD 77
             +      ++ +   +S   ++K++  L + G V + V+ +  G RL +  D +T  +
Sbjct: 10 REAEDYVSGQELCQMFDVSRTAIWKVMNQLKEEGYVIDAVKNK--GYRLVQTPDLVTAEE 67

Query: 78 VVKATEESFF 87
          V    E S+ 
Sbjct: 68 VESLLETSWA 77


>gi|284920255|emb|CBG33314.1| putative substrate-binding protein [Escherichia coli 042]
          Length = 566

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPAD 71
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPE 74


>gi|226949451|ref|YP_002804542.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum A2 str. Kyoto]
 gi|226841135|gb|ACO83801.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum A2 str. Kyoto]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|215489670|ref|YP_002332101.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O127:H6 str. E2348/69]
 gi|215267742|emb|CAS12204.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O127:H6 str. E2348/69]
          Length = 301

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|170756249|ref|YP_001781789.1| GntR family transcriptional regulator [Clostridium botulinum B1
          str. Okra]
 gi|169121461|gb|ACA45297.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum B1 str. Okra]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|168183846|ref|ZP_02618510.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum Bf]
 gi|237795605|ref|YP_002863157.1| GntR family transcriptional regulator/class I/II aminotransferase
          [Clostridium botulinum Ba4 str. 657]
 gi|182673102|gb|EDT85063.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum Bf]
 gi|229262618|gb|ACQ53651.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum Ba4 str. 657]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|168179863|ref|ZP_02614527.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum NCTC 2916]
 gi|182669440|gb|EDT81416.1| transcriptional regulator, GntR family/aminotransferase, classes
          I and II [Clostridium botulinum NCTC 2916]
          Length = 497

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|167770678|ref|ZP_02442731.1| hypothetical protein ANACOL_02024 [Anaerotruncus colihominis DSM
          17241]
 gi|167667273|gb|EDS11403.1| hypothetical protein ANACOL_02024 [Anaerotruncus colihominis DSM
          17241]
          Length = 149

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 2  HLTKRT-DYGIRVLMYC-------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           + ++  DYG  VL++        AI N   + I++IA     S+  + K+ + L K G 
Sbjct: 21 KINQKAHDYGCGVLLHMSDIHMIEAIGNYPDSNITEIAGHLGFSKGTVSKLTKKLEKGGF 80

Query: 54 VE 55
          + 
Sbjct: 81 IR 82


>gi|111017340|ref|YP_700312.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816870|gb|ABG92154.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 245

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          G+RVL   A+    P  + +++    + +  + + LQ L  AG + +
Sbjct: 7  GLRVLE--AVAESQPVGVGELSRTLQLPKSTVQRTLQALASAGWIRS 51


>gi|120403279|ref|YP_953108.1| UbiC transcription regulator-associated domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119956097|gb|ABM13102.1| transcriptional regulator, GntR family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 263

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          I  D      +IA +  +S + L + L  +   G+++  RGR GG
Sbjct: 43 IPGDKLPPEVEIATSLGVSRMTLRQALSAVEAKGLIDRRRGRFGG 87


>gi|150018358|ref|YP_001310612.1| DeoR family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904823|gb|ABR35656.1| transcriptional regulator, DeoR family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 253

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          ++     ++ +++E   +SE  + K LQ L K G ++      GG  L R   +++
Sbjct: 14 LNKHGRVKVKELSEQFNVSEGMIRKDLQRLEKNGDLQRT---YGGAILNRKISKLS 66


>gi|113968527|ref|YP_732320.1| biotin--protein ligase [Shewanella sp. MR-4]
 gi|113883211|gb|ABI37263.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. MR-4]
          Length = 319

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
          + ++Y     ++A    IS   + K +  L   G+ + +V+GR  G +L  P   I    
Sbjct: 15 LSSEYFVSGEELATQLGISRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72

Query: 78 VVKATEESFFVAECFASHKID 98
          ++++ +       CF   +I 
Sbjct: 73 LIQSID-----NRCFYFDEIP 88


>gi|91974843|ref|YP_567502.1| regulatory protein, ArsR [Rhodopseudomonas palustris BisB5]
 gi|91681299|gb|ABE37601.1| transcriptional regulator, ArsR family [Rhodopseudomonas
          palustris BisB5]
          Length = 111

 Score = 34.9 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +       +  +A++  IS+  L + L  L   GIV   R
Sbjct: 31 RLMILCRLIETGEMTVGALADSIGISQSALSQHLARLRDDGIVTYRR 77


>gi|319893237|ref|YP_004150112.1| transcriptional regulator, putative pyruvate dehydrogenase
          complex repressor [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162933|gb|ADV06476.1| transcriptional regulator, putative pyruvate dehydrogenase
          complex repressor [Staphylococcus pseudintermedius
          HKU10-03]
 gi|323463716|gb|ADX75869.1| transcriptional regulator, GntR family [Staphylococcus
          pseudintermedius ED99]
          Length = 223

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           D      ++AE+  +S   + + L  L   G+ E+V+GR     L + A  IT
Sbjct: 32 GDKLPTERKLAESYQVSRSVVREALSYLENTGVTESVQGRG---TLVK-AQDIT 81


>gi|269836533|ref|YP_003318761.1| pseudouridine synthase, RluA family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269785796|gb|ACZ37939.1| pseudouridine synthase, RluA family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 313

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R+++  A   D       IA     IS  +     Q LVKAG V  V G        R
Sbjct: 9  AVRIVLDVAAEEDGERLDRLIAARVAEISRSY----AQSLVKAGDVY-VNGEP-----AR 58

Query: 69 PADQITILDVVKAT 82
          PA +I   D ++  
Sbjct: 59 PARRIHEGDTIEIL 72


>gi|225859944|ref|YP_002741454.1| putative transcriptional repressor [Streptococcus pneumoniae
          70585]
 gi|225720967|gb|ACO16821.1| putative transcriptional repressor [Streptococcus pneumoniae
          70585]
          Length = 146

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|206559431|ref|YP_002230192.1| GntR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035469|emb|CAR51347.1| GntR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70
              D     +++  A  +S   + + +  +  +G++ET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQTLGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LAALRRALDAI 139


>gi|209883191|ref|YP_002287048.1| transcriptional regulatory protein of ArsR family [Oligotropha
           carboxidovorans OM5]
 gi|209871387|gb|ACI91183.1| transcriptional regulatory protein of ArsR family [Oligotropha
           carboxidovorans OM5]
          Length = 120

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRR 61
           L++ T   +R++ +             I EA    S   +   L  L +AG+VE+ R   
Sbjct: 13  LSQETR--LRIVRHLVTAGPEGMSAGAIGEAMDSASSSRMSFHLGHLEQAGLVESRRE-- 68

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G  +   A  +T+  +++     F + +C   H   C
Sbjct: 69  -GRSIIYSAALVTLSSLIE-----FLMRDCCQGHPEVC 100


>gi|148984472|ref|ZP_01817760.1| adc operon repressor AdcR [Streptococcus pneumoniae SP3-BS71]
 gi|221232877|ref|YP_002512031.1| MarR family transcriptional regulator [Streptococcus pneumoniae
          ATCC 700669]
 gi|225857739|ref|YP_002739250.1| putative transcriptional repressor [Streptococcus pneumoniae
          P1031]
 gi|303254009|ref|ZP_07340128.1| MarR-family regulatory protein [Streptococcus pneumoniae BS455]
 gi|303262123|ref|ZP_07348068.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS292]
 gi|303266217|ref|ZP_07352109.1| adc operon repressor AdcR [Streptococcus pneumoniae BS457]
 gi|303268884|ref|ZP_07354670.1| adc operon repressor AdcR [Streptococcus pneumoniae BS458]
 gi|147923249|gb|EDK74363.1| adc operon repressor AdcR [Streptococcus pneumoniae SP3-BS71]
 gi|220675339|emb|CAR69937.1| MarR-family regulatory protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225725955|gb|ACO21807.1| putative transcriptional repressor [Streptococcus pneumoniae
          P1031]
 gi|301800910|emb|CBW33569.1| MarR-family regulatory protein [Streptococcus pneumoniae OXC141]
 gi|302599040|gb|EFL66067.1| MarR-family regulatory protein [Streptococcus pneumoniae BS455]
 gi|302636763|gb|EFL67253.1| adc operon repressor AdcR [Streptococcus pneumoniae SP14-BS292]
 gi|302641583|gb|EFL71944.1| adc operon repressor AdcR [Streptococcus pneumoniae BS458]
 gi|302644265|gb|EFL74520.1| adc operon repressor AdcR [Streptococcus pneumoniae BS457]
          Length = 146

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|126737561|ref|ZP_01753291.1| regulatory protein GntR, HTH [Roseobacter sp. SK209-2-6]
 gi|126720954|gb|EBA17658.1| regulatory protein GntR, HTH [Roseobacter sp. SK209-2-6]
          Length = 247

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELADHFQVSRPTVREALKRLAAQSLIRTQRGAAGG 73


>gi|260905593|ref|ZP_05913915.1| DeoR family transcriptional regulator [Brevibacterium linens BL2]
          Length = 332

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVR 65
          R+L     +         ++     ++   + + +  L + G V E++ G  GG R
Sbjct: 6  RLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYR 61


>gi|329888361|ref|ZP_08266959.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568]
 gi|328846917|gb|EGF96479.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568]
          Length = 111

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    H        +IA+A  +    +   L  L +AG+V + R
Sbjct: 21 AFRLLV---RHEPEGLPAGEIADALAVPANTMSAHLGVLSRAGLVNSER 66


>gi|311900418|dbj|BAJ32826.1| putative GntR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 460

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 19 IHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +H          +AE   +S   + +  + L   G + + +G  
Sbjct: 31 LHPGVRLPSSRDLAEDLGVSRSVVVQAYEQLAAGGYLRSTQGSG 74


>gi|300071537|gb|ADJ60937.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon
          repressor [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 326

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          M  TK+      VL+             ++AE   IS   ++K +  L + G
Sbjct: 4  MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 50


>gi|298241491|ref|ZP_06965298.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297554545|gb|EFH88409.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 306

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           I +L+            S+IA    +S+  +F+ ++ L + GI + T  G  GG  L
Sbjct: 6  AIVLLL-----QGGRRTASEIARRFEVSKRTVFRDIEALCEMGIPIVTEAGVNGGYTL 58


>gi|227525029|ref|ZP_03955078.1| YbfA like protein [Lactobacillus hilgardii ATCC 8290]
 gi|227087840|gb|EEI23152.1| YbfA like protein [Lactobacillus hilgardii ATCC 8290]
          Length = 144

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+   I+  +    ++IA    I + +  +I+  LVK G +E VR
Sbjct: 39 RILLEIKIN--HLINPNEIATHLKIDKSYTSRIINRLVKQGFLEKVR 83


>gi|326440457|ref|ZP_08215191.1| transcriptional repressor [Streptomyces clavuligerus ATCC 27064]
          Length = 347

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   ++   + +    L   G  V    G  GG RL 
Sbjct: 22 SGAELAERLGVTARTVRRDADRLRALGYPVNASPGTGGGYRLG 64


>gi|260881531|ref|ZP_05404657.2| biotin-[acetyl-CoA-carboxylase] ligase [Mitsuokella multacida DSM
          20544]
 gi|260848702|gb|EEX68709.1| biotin-[acetyl-CoA-carboxylase] ligase [Mitsuokella multacida DSM
          20544]
          Length = 339

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          ++L       D      ++A+   +S   ++K +Q L + G  + +      G  L    
Sbjct: 15 KILALLREAGDSYLSGEEMAKRLGVSRTAVWKHIQELRRDGYDIVSHSRS--GYSLQSAP 72

Query: 71 DQIT 74
          D + 
Sbjct: 73 DTLR 76


>gi|218671285|ref|ZP_03520955.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 296

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          R+L     H       + +A    +   +L +IL+     G++ET
Sbjct: 30 RILFEIGSHEG--VSATALARDLHLDPAYLSRILKRFRAEGLIET 72


>gi|218663415|ref|ZP_03519345.1| HTH family transcriptional regulator [Rhizobium etli IE4771]
          Length = 110

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A        ++++A+   +S+  + K L+ L +AG++ + R
Sbjct: 21 LARLATGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGR 62


>gi|171321540|ref|ZP_02910477.1| transcriptional regulator, IclR family [Burkholderia ambifaria
           MEX-5]
 gi|171093175|gb|EDT38386.1| transcriptional regulator, IclR family [Burkholderia ambifaria
           MEX-5]
          Length = 247

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                + AT+    +      H     L  +   T+VL K   A    L       +V +
Sbjct: 71  AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQGASVTYL------DVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|125624741|ref|YP_001033224.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon
          repressor [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493549|emb|CAL98531.1| biotin--[acetyl-CoA-carboxylase] ligase and biotin operon
          repressor [Lactococcus lactis subsp. cremoris MG1363]
          Length = 323

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          M  TK+      VL+             ++AE   IS   ++K +  L + G
Sbjct: 1  MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 47


>gi|116512641|ref|YP_811548.1| biotin operon repressor [Lactococcus lactis subsp. cremoris SK11]
 gi|116108295|gb|ABJ73435.1| Biotin operon repressor [Lactococcus lactis subsp. cremoris SK11]
          Length = 323

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          M  TK+      VL+             ++AE   IS   ++K +  L + G
Sbjct: 1  MQTTKQF-----VLLELLRQKGNWVSGDELAEELNISRESIWKAINTLKRKG 47


>gi|120405775|ref|YP_955604.1| regulatory protein ArsR [Mycobacterium vanbaalenii PYR-1]
 gi|119958593|gb|ABM15598.1| transcriptional regulator, ArsR family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 128

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++++ +             +A+   ++E  +   L  L +AG+VE+ R
Sbjct: 54  VKIMSHLYSSAAGEENSGSLAKVLGLTESTVSHHLSQLRRAGLVESDR 101


>gi|56964252|ref|YP_175983.1| manganese transport transcriptional regulator [Bacillus clausii
          KSM-K16]
 gi|81365841|sp|Q5WF38|MNTR_BACSK RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|56910495|dbj|BAD65022.1| manganese transport regulator [Bacillus clausii KSM-K16]
          Length = 143

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K+         G+V T +G + G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALEVHPSSVTKMVQKLDKSDYLVYERYRGLVLTAKGNKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|15614432|ref|NP_242735.1| hypothetical protein BH1869 [Bacillus halodurans C-125]
 gi|10174487|dbj|BAB05588.1| BH1869 [Bacillus halodurans C-125]
          Length = 313

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRG 62
            I ++AEA  +S   +   ++ L KAGI+ T  V G+ G
Sbjct: 33 MNIRELAEAVGLSSAIMTMHIKKLEKAGIIRTEMVPGKAG 72


>gi|302188841|ref|ZP_07265514.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae
           642]
          Length = 249

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|301383221|ref|ZP_07231639.1| transcriptional regulator, GntR family protein [Pseudomonas
          syringae pv. tomato Max13]
 gi|302059064|ref|ZP_07250605.1| transcriptional regulator, GntR family protein [Pseudomonas
          syringae pv. tomato K40]
 gi|302133717|ref|ZP_07259707.1| transcriptional regulator, GntR family protein [Pseudomonas
          syringae pv. tomato NCPPB 1108]
 gi|331018443|gb|EGH98499.1| transcriptional regulator, GntR family protein [Pseudomonas
          syringae pv. lachrymans str. M302278PT]
          Length = 228

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|284174050|ref|ZP_06388019.1| transcriptional regulator, MarR family protein [Sulfolobus
          solfataricus 98/2]
          Length = 92

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          L    + ++    + +I E   IS   L K ++ L + G ++
Sbjct: 6  LAILTLLSEGELSVKEIQEYVNISRRNLVKTIRKLERKGYIQ 47


>gi|114797496|ref|YP_761126.1| putative transcriptional regulator NolR [Hyphomonas neptunium
          ATCC 15444]
 gi|114737670|gb|ABI75795.1| putative transcriptional regulator NolR [Hyphomonas neptunium
          ATCC 15444]
          Length = 107

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+ + CA+ ++    ++Q+A+    S+  + + L  L  AG+V + R
Sbjct: 34 RLKIMCAL-SEGELPVNQLAQLTGQSQSAVSQHLAKLRAAGLVTSRR 79


>gi|15790745|ref|NP_280569.1| hypothetical protein VNG1843C [Halobacterium sp. NRC-1]
 gi|169236488|ref|YP_001689688.1| hypothetical protein OE3589F [Halobacterium salinarum R1]
 gi|10581289|gb|AAG20049.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727554|emb|CAP14342.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 218

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L   A     P  +++I+E   +S   +   LQ L  AG+VE+ 
Sbjct: 17 RILQLLARK---PCYVTEISEYIGVSPKAVIDHLQQLDDAGLVESR 59


>gi|84687298|ref|ZP_01015178.1| transcriptional regulator, GntR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664731|gb|EAQ11215.1| transcriptional regulator, GntR family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 243

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 26/133 (19%)

Query: 1   MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
           M L++       +  +         D      ++ E   +++  + + L+ L   G+V++
Sbjct: 1   MRLSRPAQVAEAIKTFIVKEGLQPGDRLPSEPELIERFGMAKGTIREALRLLDAQGLVKS 60

Query: 57  VRGRRGGVRLCRPA--------------DQITILDVV---KATEESFFVAECFASHKIDC 99
             G  GG  +  P+                +TI D+    +  E    +    A +   C
Sbjct: 61  RTGPGGGTFVHEPSPERAEALLANYFYFKDLTISDIYQIRRVLEP--ELVADLAGNLNPC 118

Query: 100 PLVGSCGLTSVLR 112
            L     L ++L 
Sbjct: 119 VLGE---LRTILA 128


>gi|158313483|ref|YP_001505991.1| helix-turn-helix type 11 domain-containing protein [Frankia sp.
          EAN1pec]
 gi|158108888|gb|ABW11085.1| Helix-turn-helix type 11 domain protein [Frankia sp. EAN1pec]
          Length = 366

 Score = 34.9 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                +IA    +S   +++ L  L +AG+ V   RG  GG  L
Sbjct: 17 GRLTAREIAAELEVSVRTVYRDLDALAEAGVPVLAERGATGGYEL 61


>gi|325962280|ref|YP_004240186.1| ArsR family transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468367|gb|ADX72052.1| transcriptional regulator, ArsR family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 113

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A  +  P  ++++AE   IS+  + K +Q L  AG+V   R
Sbjct: 24 IARLSRGPATVNELAEPFEISKQAVSKHIQVLELAGLVTRSR 65


>gi|323357828|ref|YP_004224224.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274199|dbj|BAJ74344.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 102

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           V +Y A       R+ +IA+A  I+E     IL  LV+AG ++
Sbjct: 24 HVFIYVARDPGA--RVREIADAVGITERTAHGILADLVEAGYLK 65


>gi|315649351|ref|ZP_07902440.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
 gi|315275339|gb|EFU38708.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
          Length = 289

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +A+   +S   L + L  L   G+ + +V+GR GG RL
Sbjct: 1  MADEFGLSVRTLSRDLDELSVLGVPIYSVQGRGGGYRL 38


>gi|253750620|ref|YP_003024057.1| protein RepR [Streptococcus suis BM407]
 gi|251819052|emb|CAZ55669.1| protein RepR [Streptococcus suis BM407]
          Length = 496

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 20  HNDYP---NRISQIAEACCISELFLFKILQPLVKAG-IVET-VRGRRGGVRLC 67
           ++D P    +  +I     I E  L  +L+ L   G I+ +  RGR+GG+ L 
Sbjct: 384 NSDSPYLRVKKKEITATIGIPERSLDYVLKTLQSEGKILYSFKRGRQGGIILA 436


>gi|238026642|ref|YP_002910873.1| GntR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237875836|gb|ACR28169.1| Transcriptional regulator, GntR family protein [Burkholderia glumae
           BGR1]
          Length = 252

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--------PA 70
              D     +++     +S   + + +  +  +G++ET  G  G   L            
Sbjct: 35  RPGDKLPTETEVMATQGVSRTVVREAISRMQASGLIETRHGI-GSFVLAPERRRTLGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
             I T+ DV+   E    + +EC +                 LR+AL+A    
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANDTD----LDSLRRALDAIAQS 142


>gi|254521680|ref|ZP_05133735.1| transcriptional regulator MarR family [Stenotrophomonas sp.
          SKA14]
 gi|219719271|gb|EED37796.1| transcriptional regulator MarR family [Stenotrophomonas sp.
          SKA14]
          Length = 154

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +R LM        P RI  +A AC +S   L + +  +V+ G + +V G
Sbjct: 42 LRTLM-----AQGPCRIKDLALACGLSHSALSQTVAAMVRDGWLHSVIG 85


>gi|254393238|ref|ZP_05008391.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197706878|gb|EDY52690.1| DeoR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 346

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++AE   ++   + +    L   G  V    G  GG RL 
Sbjct: 21 SGAELAERLGVTARTVRRDADRLRALGYPVNASPGTGGGYRLG 63


>gi|152969673|ref|YP_001334782.1| SorC family transcriptional regulator [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206580613|ref|YP_002239257.1| putative sugar-binding domain protein [Klebsiella pneumoniae 342]
 gi|238894156|ref|YP_002918890.1| putative SorC-family transcriptional regulator [Klebsiella
          pneumoniae NTUH-K2044]
 gi|262043176|ref|ZP_06016312.1| DeoR family transcriptional regulator [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|288936115|ref|YP_003440174.1| DeoR family transcriptional regulator [Klebsiella variicola
          At-22]
 gi|290510832|ref|ZP_06550202.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|329999630|ref|ZP_08303464.1| sugar-binding domain protein [Klebsiella sp. MS 92-3]
 gi|150954522|gb|ABR76552.1| putative transcriptional regulator, sorC family [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|206569671|gb|ACI11447.1| putative sugar-binding domain protein [Klebsiella pneumoniae 342]
 gi|238546472|dbj|BAH62823.1| putative SorC-family transcriptional regulator [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039454|gb|EEW40589.1| DeoR family transcriptional regulator [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|288890824|gb|ADC59142.1| transcriptional regulator, DeoR family [Klebsiella variicola
          At-22]
 gi|289777548|gb|EFD85546.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|328538277|gb|EGF64420.1| sugar-binding domain protein [Klebsiella sp. MS 92-3]
          Length = 320

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +DY +  L   A+ + D      +IA+   IS + + ++L+   + GIVE
Sbjct: 6  SDYAL--LTEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVE 53


>gi|149926663|ref|ZP_01914923.1| regulatory protein GntR, HTH:UbiC transcription
          regulator-associated [Limnobacter sp. MED105]
 gi|149824592|gb|EDM83808.1| regulatory protein GntR, HTH:UbiC transcription
          regulator-associated [Limnobacter sp. MED105]
          Length = 291

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +AE   +S + + + LQ LVK G+V   RG+ 
Sbjct: 56 LAEQFNVSRVTMRRALQDLVKEGLVARGRGKG 87


>gi|86160318|ref|YP_467103.1| hypothetical protein Adeh_3902 [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85776829|gb|ABC83666.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 221

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
             +QIAE   ++   +++ L  L  A + +   +GR GG  L R
Sbjct: 21 VTAAQIAERFGVTLRTVYRDLDALRSADLPLHAEQGRGGGYALDR 65


>gi|332561064|ref|ZP_08415382.1| GntR domain-containing protein [Rhodobacter sphaeroides WS8N]
 gi|332274862|gb|EGJ20178.1| GntR domain-containing protein [Rhodobacter sphaeroides WS8N]
          Length = 239

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          Q+AE   +S   L   L+ L   GIV + +G  
Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72


>gi|330895423|gb|EGH27761.1| transcriptional regulator GntR [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330955504|gb|EGH55764.1| transcriptional regulator GntR [Pseudomonas syringae Cit 7]
 gi|330981039|gb|EGH79142.1| transcriptional regulator GntR [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 249

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|330879529|gb|EGH13678.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330965252|gb|EGH65512.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 228

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
            D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 15 RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 72

Query: 71 DQI-TILDVVKATE 83
            I T+ DV+   E
Sbjct: 73 ATIVTLRDVLAILE 86


>gi|324007695|gb|EGB76914.1| FCD domain protein [Escherichia coli MS 57-2]
          Length = 301

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|298695571|gb|ADI98793.1| probable regulatory protein DeoR family [Staphylococcus aureus
          subsp. aureus ED133]
          Length = 230

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|297157696|gb|ADI07408.1| putative GntR family transcriptional regulator [Streptomyces
          bingchenggensis BCW-1]
          Length = 257

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 20 HNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
              P     Q+ E   +S   + K +  L   G++E + G+ G      PA  +TI
Sbjct: 28 KPGSPLPSETQLIERYKVSRPTVRKAIAALRAEGLIEVIHGK-GSYVRAIPAPAVTI 83


>gi|325677246|ref|ZP_08156912.1| regulatory protein GntR [Rhodococcus equi ATCC 33707]
 gi|325551943|gb|EGD21639.1| regulatory protein GntR [Rhodococcus equi ATCC 33707]
          Length = 272

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 24/136 (17%)

Query: 12  RVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG------- 63
           R+L    A   D   + +++ E   ++   L + L+ L   G+V   RG RGG       
Sbjct: 34  RILRGDLA-EGDVLPKEAELREQYPVNVQSLREALRILEAEGLVRVRRGNRGGAVVHRPT 92

Query: 64  ---------VRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR 112
                    + L      I   DV +A    E    A C         +V    L ++  
Sbjct: 93  PGNVAYSLSMVLAMSGTDID--DVGRALHEIEPMCAALCAEREDRATEVVP--ILRTLHE 148

Query: 113 KALNAFFDVLTQYSIE 128
           ++L    D++   ++ 
Sbjct: 149 ESLANVDDLVAATTLS 164


>gi|302381850|ref|YP_003817673.1| ArsR family transcriptional regulator [Brevundimonas
          subvibrioides ATCC 15264]
 gi|302192478|gb|ADL00050.1| regulatory protein ArsR [Brevundimonas subvibrioides ATCC 15264]
          Length = 131

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM  +   +    +S+I EA  I +  L + L  L +A +V+T R
Sbjct: 26 LMILSRLIEGERTVSEIDEATGIGQPALSQQLAELRRADVVKTRR 70


>gi|261602642|gb|ACX92245.1| transcriptional regulator, MarR family [Sulfolobus solfataricus
          98/2]
          Length = 94

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          L    + ++    + +I E   IS   L K ++ L + G ++
Sbjct: 8  LAILTLLSEGELSVKEIQEYVNISRRNLVKTIRKLERKGYIQ 49


>gi|261417888|ref|YP_003251570.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767300|ref|YP_004132801.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374345|gb|ACX77088.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61]
 gi|317112166|gb|ADU94658.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52]
          Length = 243

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                    ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 28 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 70


>gi|261418684|ref|YP_003252366.1| ArsR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765499|ref|YP_004131000.1| ArsR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375141|gb|ACX77884.1| transcriptional regulator, ArsR family [Geobacillus sp. Y412MC61]
 gi|317110365|gb|ADU92857.1| regulatory protein ArsR [Geobacillus sp. Y412MC52]
          Length = 123

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          +L   A   D    I+ IA++  IS   + K L+ L +AG+V   + GR    RL    
Sbjct: 35 MLQLLA---DNELSIAAIAKSFPISRTAVNKHLRVLSEAGLVSCRKTGRETRYRLEPEP 90


>gi|254428414|ref|ZP_05042121.1| Ribonuclease BN-like family [Alcanivorax sp. DG881]
 gi|196194583|gb|EDX89542.1| Ribonuclease BN-like family [Alcanivorax sp. DG881]
          Length = 439

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 17/102 (16%)

Query: 41  LFKILQP------------LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           + K++Q             LV A ++   R   GG  L R    +++  +V      +  
Sbjct: 314 VRKVMQESGISQWDEFRNLLVNAKLIR--RTEEGGYMLSRDLRNLSLGQLVAML--PWPA 369

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
                  +   PL     L + + +A       L   S++ L
Sbjct: 370 HTQLRVRQQQAPLPWETALKTRMDQAREGMMAPLD-ISLDTL 410


>gi|84687073|ref|ZP_01014955.1| transcriptional regulator, Fnr-type [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664844|gb|EAQ11326.1| transcriptional regulator, Fnr-type [Rhodobacterales bacterium
           HTCC2654]
          Length = 246

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           P    ++++AC  + + + ++++ L ++GIV+  RG
Sbjct: 181 PLTQKELSDACGTTSIHMNRVVRKLRESGIVDISRG 216


>gi|325833829|ref|ZP_08166179.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
 gi|325485187|gb|EGC87659.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
          Length = 128

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++A    ++   + K+ Q L   G++ + RG+R
Sbjct: 33 RPGDTLPTVRELAIQLGVNYNTIHKVYQDLETDGLILSGRGKR 75


>gi|331660989|ref|ZP_08361921.1| YjjM protein product [Escherichia coli TA206]
 gi|331052031|gb|EGI24070.1| YjjM protein product [Escherichia coli TA206]
          Length = 301

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|292653983|ref|YP_003533881.1| hypothetical protein HVO_A0436 [Haloferax volcanii DS2]
 gi|291369795|gb|ADE02023.1| unknown protein [Haloferax volcanii DS2]
          Length = 307

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R L   A+H +    +S +A +   S  +  ++++ L  AG+VET R
Sbjct: 7  VRALT--ALHGEQ--TVSALATSLDRSLSYTSELVERLETAGLVETRR 50


>gi|284162792|ref|YP_003401415.1| TrmB family transcriptional regulator [Archaeoglobus profundus
          DSM 5631]
 gi|284012789|gb|ADB58742.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM
          5631]
          Length = 240

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          I++L Y A  ++   R ++I E   ++   L + L+ LV+ G V+
Sbjct: 9  IKILSYLAEKDEGKARFNEIVEELGLARATLSRNLKHLVEKGYVK 53


>gi|284161580|ref|YP_003400203.1| TrmB family transcriptional regulator [Archaeoglobus profundus
          DSM 5631]
 gi|284011577|gb|ADB57530.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM
          5631]
          Length = 231

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 1  MHLTK------RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M +T+       ++Y  + L    +H +       IAE   I    ++ ++  L   G+V
Sbjct: 1  MKITEVLKYFGLSEYEAKALYVLLLHGE--LTAKDIAELSGIPRTSVYDVMNLLESKGLV 58

Query: 55 ET 56
           +
Sbjct: 59 VS 60


>gi|260595956|ref|YP_003208527.1| DNA-binding transcriptional repressor LldR [Cronobacter
          turicensis z3032]
 gi|260215133|emb|CBA26918.1| Putative L-lactate dehydrogenase operon regulatory protein
          [Cronobacter turicensis z3032]
          Length = 262

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 11 IRVLM-YCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          IR L+    +          Q+A+   +S   L + LQ L++ G++ + RG  
Sbjct: 16 IRALIAERGLEAGMRLPSERQLAQELGVSRNSLREALQILIRDGLLISRRGGG 68


>gi|260858533|ref|YP_003232424.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O26:H11 str. 11368]
 gi|257757182|dbj|BAI28684.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O26:H11 str. 11368]
 gi|323157597|gb|EFZ43703.1| bacterial regulatory s, gntR family protein [Escherichia coli
          EPECa14]
          Length = 301

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|257485292|ref|ZP_05639333.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010835|gb|EGH90891.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 244

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
             E    +            L         L +   AF  +L 
Sbjct: 103 LLEFRLSL------EVEAAGLAAQRRSPEALLELKRAFDALLD 139


>gi|257387429|ref|YP_003177202.1| MarR family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|257169736|gb|ACV47495.1| transcriptional regulator, MarR family [Halomicrobium mukohataei
          DSM 12286]
          Length = 218

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L   A     P  +++I+E   +S   +   LQ L  AG++E+ 
Sbjct: 17 RILRLLAHK---PCYVTEISEYIGVSPKAVIDHLQKLEDAGLIESR 59


>gi|260589230|ref|ZP_05855143.1| transcriptional regulator, GntR family [Blautia hansenii DSM
          20583]
 gi|260540311|gb|EEX20880.1| transcriptional regulator, GntR family [Blautia hansenii DSM
          20583]
          Length = 117

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + ++A+   ++   + K L  L   G++ + R
Sbjct: 36 SVRELAQTAGVNPNTMQKALSELEHTGLLYSQR 68


>gi|226328367|ref|ZP_03803885.1| hypothetical protein PROPEN_02261 [Proteus penneri ATCC 35198]
 gi|225203100|gb|EEG85454.1| hypothetical protein PROPEN_02261 [Proteus penneri ATCC 35198]
          Length = 111

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     +S++ E+  I +  L + L  L   G+V T R
Sbjct: 37 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 81


>gi|212710644|ref|ZP_03318772.1| hypothetical protein PROVALCAL_01710 [Providencia alcalifaciens
          DSM 30120]
 gi|212686725|gb|EEB46253.1| hypothetical protein PROVALCAL_01710 [Providencia alcalifaciens
          DSM 30120]
          Length = 341

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 10 GIRVLMYC--AIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +R  +    A H  D P    QIA+    +   + KIL+ L    I   V
Sbjct: 30 ALRAAIKLKLAEHLQDGPQTAKQIAQKIEANATMIHKILRLLATQNIFTAV 80


>gi|160892118|ref|ZP_02073121.1| hypothetical protein BACUNI_04581 [Bacteroides uniformis ATCC 8492]
 gi|270296277|ref|ZP_06202477.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480545|ref|ZP_07939636.1| HTH domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156858596|gb|EDO52027.1| hypothetical protein BACUNI_04581 [Bacteroides uniformis ATCC 8492]
 gi|270273681|gb|EFA19543.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903303|gb|EFV25166.1| HTH domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 181

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-GGVR 65
           +D P     +A    IS   + K +  L   GI+ +  G   GG  
Sbjct: 127 SDPPMSAETMAYKIGISSRAVEKQIAKLRSMGIL-SREGADFGGYW 171


>gi|29828003|ref|NP_822637.1| MarR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605105|dbj|BAC69172.1| putative MarR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 171

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           A       R+ +IA+   +S+  L +++  L K G+V   RG
Sbjct: 88  APDGGSGYRVQEIADRVHLSQSALSRLIGRLEKDGLVT--RG 127


>gi|20807656|ref|NP_622827.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516201|gb|AAM24431.1| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
          Length = 146

 Score = 34.9 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          V+M  + +   P  +  +A    IS   L  I+  LV+ G+V+
Sbjct: 44 VIMVLSENKHTPMYMKDVASELGISPSTLTTIVDKLVEKGLVK 86


>gi|332085784|gb|EGI90948.1| bacterial extracellular solute-binding protein, family 5
          [Shigella dysenteriae 155-74]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRG 65


>gi|322830891|ref|YP_004210918.1| MarR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321166092|gb|ADW71791.1| transcriptional regulator, MarR family [Rahnella sp. Y9602]
          Length = 310

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            R +M+    +H +      +IA    +S   + ++L     AGIV 
Sbjct: 6  ATRAMMHLVAKLHYESDMSQVEIARKLDVSTATISRLLNKARAAGIVR 53


>gi|317152875|ref|YP_004120923.1| phosphonates metabolism transcriptional regulator PhnF
          [Desulfovibrio aespoeensis Aspo-2]
 gi|316943126|gb|ADU62177.1| phosphonates metabolism transcriptional regulator PhnF
          [Desulfovibrio aespoeensis Aspo-2]
          Length = 241

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D     + ++E   ++   + + +  L +AG+V   +GR 
Sbjct: 28 RPGDRLPSENALSEKYGVNRHTIRRAMAALEQAGLVRVEQGRG 70


>gi|288936812|ref|YP_003440871.1| GntR family transcriptional regulator with [Klebsiella variicola
          At-22]
 gi|288891521|gb|ADC59839.1| transcriptional regulator, GntR family with aminotransferase
          domain [Klebsiella variicola At-22]
          Length = 475

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67 CRPADQ 72
                
Sbjct: 93 PERPAD 98


>gi|258423685|ref|ZP_05686572.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus A9635]
 gi|257846077|gb|EEV70104.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus A9635]
          Length = 230

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|227356459|ref|ZP_03840847.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227163569|gb|EEI48490.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 111

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     +S++ E+  I +  L + L  L   G+V T R
Sbjct: 37 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 81


>gi|226304673|ref|YP_002764631.1| MerR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226183788|dbj|BAH31892.1| putative MerR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 152

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 5  KRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
              Y +   ++      + P++  ++A    +  +++ K+++ L K+G V + R
Sbjct: 34 THAQYSVLASLHGLVSAGERPSQ-RELAAHTGLQRIYISKLVRALEKSGFVVSER 87


>gi|209917662|ref|YP_002291746.1| hypothetical protein ECSE_0471 [Escherichia coli SE11]
 gi|209910921|dbj|BAG75995.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRG 62
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRG 65


>gi|154686312|ref|YP_001421473.1| putative transcriptional regulator [Bacillus amyloliquefaciens
           FZB42]
 gi|154352163|gb|ABS74242.1| putative transcriptional regulator [Bacillus amyloliquefaciens
           FZB42]
          Length = 196

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L+  A        +  IA+    ++    K++  L K G V TV  +     L + A  I
Sbjct: 50  LIAIAHLPTEDTTLMNIAKKLGTTKQTANKLISSLAKKGYVHTVPSK-----LDKRAINI 104

Query: 74  TILDVVKATEESFFVAECFA 93
            I       E    +  C  
Sbjct: 105 EI-----TPEGKKALISCSE 119


>gi|219850307|ref|YP_002464740.1| putative transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219544566|gb|ACL26304.1| putative transcriptional regulator [Chloroflexus aggregans DSM
          9485]
          Length = 103

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          VL+  A +        +IA+   I+E  + +IL  L   G +  VR
Sbjct: 12 VLLCIARNP--RVTAHEIAQMVGITERAVQRILHDLHTDGYISHVR 55


>gi|92112536|ref|YP_572464.1| GntR family transcriptional regulator [Chromohalobacter
          salexigens DSM 3043]
 gi|91795626|gb|ABE57765.1| transcriptional regulator, GntR family [Chromohalobacter
          salexigens DSM 3043]
          Length = 261

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +      ++AE   +S   L + +Q L   G++ + +G  
Sbjct: 31 GEKLPPERELAEHFGVSRPSLREAIQKLAARGLLTSRQGGG 71


>gi|91773142|ref|YP_565834.1| hypothetical protein Mbur_1161 [Methanococcoides burtonii DSM
          6242]
 gi|91712157|gb|ABE52084.1| Hypothetical protein Mbur_1161 [Methanococcoides burtonii DSM
          6242]
          Length = 175

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++VL Y  + ++       I +   I +  L++ +  L + G+++  R
Sbjct: 15 ALKVLAYIGLQSEGSADFQDILDNLDIQKSTLWRYISSLREQGLIDISR 63


>gi|134295193|ref|YP_001118928.1| GntR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138350|gb|ABO54093.1| transcriptional regulator, GntR family [Burkholderia vietnamiensis
           G4]
          Length = 253

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70
              D     +++  A  +S   + + +  +  +G++ET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRRALGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRASDAD----LAALRRALDAI 139


>gi|330958129|gb|EGH58389.1| transcriptional regulator GntR [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 249

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|331082638|ref|ZP_08331761.1| hypothetical protein HMPREF0992_00685 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400257|gb|EGG79899.1| hypothetical protein HMPREF0992_00685 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 117

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           + ++A+   ++   + K L  L   G++ + R
Sbjct: 36 SVRELAQTAGVNPNTMQKALSELEHTGLLYSQR 68


>gi|325498264|gb|EGC96123.1| solute-binding family 5 protein [Escherichia fergusonii ECD227]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            I ++AE C  SE  L  +L+   ++G +E    + RG+RG +R     + +    + +
Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|325977737|ref|YP_004287453.1| msm operon regulatory protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177665|emb|CBZ47709.1| msm operon regulatory protein [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 286

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 20/35 (57%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            + YC ++ D P ++ +IA+   ++  +L ++ + 
Sbjct: 175 AVAYCNLNLDKPIKVQEIADYLNLNRSYLARLFKQ 209


>gi|324114672|gb|EGC08640.1| extracellular solute-binding protein [Escherichia fergusonii
          B253]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            I ++AE C  SE  L  +L+   ++G +E    + RG+RG +R     + +    + +
Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|323976070|gb|EGB71163.1| extracellular solute-binding protein [Escherichia coli TW10509]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            I ++AE C  SE  L  +L+   ++G +E    + RG+RG +R     + +    + +
Sbjct: 24 VTIGELAERCFCSERHLRTLLRQAQESGWLEWQAQSGRGKRGKLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|306830839|ref|ZP_07464001.1| msm operon regulatory protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426862|gb|EFM29972.1| msm operon regulatory protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 286

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 20/35 (57%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            + YC ++ D P ++ +IA+   ++  +L ++ + 
Sbjct: 175 AVAYCNLNLDKPIKVQEIADYLNLNRSYLARLFKQ 209


>gi|261408783|ref|YP_003245024.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261285246|gb|ACX67217.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 230

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
           + ++AE   +S   + + L  L + G+ +    G+ GG 
Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSRLGVPLYANEGKNGGY 60


>gi|295399470|ref|ZP_06809452.1| transcriptional regulator, GntR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312109971|ref|YP_003988287.1| GntR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978936|gb|EFG54532.1| transcriptional regulator, GntR family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311215072|gb|ADP73676.1| transcriptional regulator, GntR family [Geobacillus sp. Y4.1MC1]
          Length = 126

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +    + ++A    ++   + +    L + GIVET RG+ 
Sbjct: 31 GEKLPSVREMAVKTGVNPNTIQRTYSELERMGIVETRRGQG 71


>gi|239934260|ref|ZP_04691213.1| hypothetical protein SghaA1_39032 [Streptomyces ghanaensis ATCC
          14672]
          Length = 114

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RVL+  A      +R+  +A+A  I+E  +  I+  L  AG +   R
Sbjct: 23 RVLIALARDPG--SRLRDVADAIDITERAVQLIVADLEAAGYLTRTR 67


>gi|229005209|ref|ZP_04162929.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus mycoides Rock1-4]
 gi|228756069|gb|EEM05394.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus mycoides Rock1-4]
          Length = 503

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +H D    +  IA+   IS L + K  + L   G V+  +G+ 
Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLETKGYVQIKQGKG 88


>gi|227512044|ref|ZP_03942093.1| YbfA-like protein [Lactobacillus buchneri ATCC 11577]
 gi|227084696|gb|EEI20008.1| YbfA-like protein [Lactobacillus buchneri ATCC 11577]
          Length = 144

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+   I+  +    ++IA    I + +  +I+  LVK G +E VR
Sbjct: 39 RILLEIKIN--HLINPNEIATHLKIDKSYTSRIINRLVKQGFLEKVR 83


>gi|219848363|ref|YP_002462796.1| MarR family transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219542622|gb|ACL24360.1| transcriptional regulator, MarR family [Chloroflexus aggregans
          DSM 9485]
          Length = 143

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R+L   A   D    + ++A+A  I+   L  + + LV+ G++E
Sbjct: 42 LRLLSLLA--PDRSLSMRELADALNITPPSLTALTRRLVQNGLIE 84


>gi|218459145|ref|ZP_03499236.1| HTH family transcriptional regulator [Rhizobium etli Kim 5]
          Length = 110

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A        ++++A+   +S+  + K L+ L +AG++ + R
Sbjct: 21 LARLATGKATVAELADPFELSQPAISKHLKVLEQAGLIRSGR 62


>gi|118587924|ref|ZP_01545334.1| transcriptional regulator, GntR family protein [Stappia aggregata
          IAM 12614]
 gi|118439546|gb|EAV46177.1| transcriptional regulator, GntR family protein [Stappia aggregata
          IAM 12614]
          Length = 236

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGG 63
           +      ++AE   IS   L K L  L + G++E ++G     R+GG
Sbjct: 33 GERLPPEREMAEELGISIGTLRKALADLTQKGLLERIQGSGNYIRQGG 80


>gi|86356084|ref|YP_467976.1| ArsR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280186|gb|ABC89249.1| probable transcriptional regulator protein, ArsR family
          [Rhizobium etli CFN 42]
          Length = 129

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++L Y +          +IAE   IS+  + + L  L  AG++ 
Sbjct: 40 KILAYLSASG---LTAGEIAERFSISKPAVSQHLSILETAGLIR 80


>gi|326440846|ref|ZP_08215580.1| multi-domain regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 1267

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 11  IRVLM-YCAIHNDYPNRISQIAEA-------CCISELFLFKILQPLVKAGIVETVRGRRG 62
           +R L+   A+    P  +  IA                +  ++  L +A   E V    G
Sbjct: 26  LRALLTVLALRPGRPVTVGLIAAEIWDEEPPEDTPGA-VQALVGRLRRAIGREAVESVAG 84

Query: 63  GVRLCRPADQITI-------LDVVKATE 83
           G RL   AD + +        + V+A E
Sbjct: 85  GYRLRADADDVDLHRFDRLAGEGVRAFE 112


>gi|325002355|ref|ZP_08123467.1| GntR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 130

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D      ++ EA  I+   + K  + L + G+VE  RG  
Sbjct: 32 RAGDRLPTAREVVEATAINPNTVLKAYRELERDGLVEAKRGVG 74


>gi|313124006|ref|YP_004034265.1| transcriptional regulator, arsr family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|312280569|gb|ADQ61288.1| Transcriptional regulator, ArsR family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
          Length = 100

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          I +L Y   H + P     I     +S+  + K L  L K   V+
Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65


>gi|311898500|dbj|BAJ30908.1| hypothetical protein KSE_51290 [Kitasatospora setae KM-6054]
          Length = 223

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           CA+       +++I+    +       ++  L +AG+V   +   GG    +P   +T+L
Sbjct: 156 CALCATDVKSVAEISALLNLPLGVARILVADLAEAGLVAIHQPAAGGESGNQP--DVTLL 213

Query: 77  D 77
           +
Sbjct: 214 E 214


>gi|290510132|ref|ZP_06549502.1| transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776848|gb|EFD84846.1| transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 475

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+L+      +    P    ++A A  +S   +   L  L + G + + +G    + L
Sbjct: 34 ALRLLILDGRLTLQTRLPGE-RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVL 92

Query: 67 CRPADQ 72
                
Sbjct: 93 PERPAD 98


>gi|261416449|ref|YP_003250132.1| putative transcriptional regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372905|gb|ACX75650.1| putative transcriptional regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327270|gb|ADL26471.1| helix-turn-helix DNA-binding domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 491

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-RGGVR 65
           +   I  D      +IA    IS + + K ++ + + GI++ V G  +GG  
Sbjct: 438 ILLIIKQDPSVSQDEIATIVGISRIHVNKNMKKMEQKGIIKRV-GPDKGGHW 488


>gi|239940764|ref|ZP_04692701.1| putative AfsR-like transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 342

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 21/79 (26%)

Query: 11  IRVLM-YCAIHNDYPNRISQI----------AEACCISELFLFKILQPLVKA---GIVET 56
           +R L+   A+          +          A+A       L  ++  L +A   G VE+
Sbjct: 29  LRALLTVLALRPGRTVPAGHLVDEVWDGDPPADAAGA----LQALVGRLRRALGRGAVES 84

Query: 57  VRGRRGGVRLCRPADQITI 75
           V    GG RL  P D + +
Sbjct: 85  V---AGGYRLAAPPDAVDL 100


>gi|229822458|ref|YP_002883984.1| ROK family protein [Beutenbergia cavernae DSM 12333]
 gi|229568371|gb|ACQ82222.1| ROK family protein [Beutenbergia cavernae DSM 12333]
          Length = 402

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-------RGRRG 62
           +R ++      D     +++A    +S+  + +I+  L+ AG V  V       RGR G
Sbjct: 23 ALRAILD-----DGQATRAELARRLGLSKPAVTRIVGDLLAAGYVAEVGPEAANGRGRPG 77


>gi|225021784|ref|ZP_03710976.1| hypothetical protein CORMATOL_01812 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945480|gb|EEG26689.1| hypothetical protein CORMATOL_01812 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 151

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
           +++     D+     ++ E    S+  + + L+ L KA IVE  R GR    RL  PA  
Sbjct: 63  IIHLLAQRDHFV--YELVETLGSSQPLISQHLRILRKANIVEHHRSGRLITYRLRCPAA- 119

Query: 73  ITILDVVKATEESFFVAECFASHKID 98
              LD+++          C++    D
Sbjct: 120 ---LDIIE-----LAATTCYSDRHHD 137


>gi|218692743|ref|YP_002400955.1| putative DNA-binding transcriptional regulator [Escherichia coli
          ED1a]
 gi|218430307|emb|CAV18186.1| putative DNA-binding transcriptional regulator [Escherichia coli
          ED1a]
          Length = 301

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|167551727|ref|ZP_02345480.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA29]
 gi|205323428|gb|EDZ11267.1| bacterial extracellular solute-binding protein, family 5
          [Salmonella enterica subsp. enterica serovar Saintpaul
          str. SARA29]
          Length = 566

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG 62
           +S++AE C  SE  L  +L+   +AG +    ++ RG+RG
Sbjct: 25 TVSELAERCFCSERHLRTLLRQAQQAGWLRWEAQSGRGKRG 65


>gi|226198631|ref|ZP_03794197.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pakistan 9]
 gi|225929374|gb|EEH25395.1| transcriptional regulator, IclR family [Burkholderia pseudomallei
          Pakistan 9]
          Length = 248

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          VL   A  +D P    ++AE   I +  + +I   LV AG +
Sbjct: 3  VLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43


>gi|104774192|ref|YP_619172.1| ArsR family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|103423273|emb|CAI98108.1| Transcriptional regulator (ArsR family) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
 gi|325125973|gb|ADY85303.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 100

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          I +L Y   H + P     I     +S+  + K L  L K   V+
Sbjct: 23 IHILFYLRKHGESPVSA--IVGHLGVSQPVISKQLGILKKYDFVQ 65


>gi|88854412|ref|ZP_01129079.1| putative transcriptional regulator [marine actinobacterium
          PHSC20C1]
 gi|88816220|gb|EAR26075.1| putative transcriptional regulator [marine actinobacterium
          PHSC20C1]
          Length = 108

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A   +     S +AE   +S   + K L  L  AG+VE VR
Sbjct: 21 LAALGEGEASASALAERMPVSRQAIAKHLSVLHDAGLVEPVR 62


>gi|87119290|ref|ZP_01075188.1| transcriptional regulator of pyruvate dehydrogenase complex
          [Marinomonas sp. MED121]
 gi|86165681|gb|EAQ66948.1| transcriptional regulator of pyruvate dehydrogenase complex
          [Marinomonas sp. MED121]
          Length = 248

 Score = 34.9 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 13 VLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++       D      ++AE   +S   L + +Q L   G+V + +G  
Sbjct: 17 MMIEGLLKPGDRLPPERELAERFSVSRPSLREAIQNLKAKGMVISRQGGG 66


>gi|329930486|ref|ZP_08284026.1| HTH domain protein [Paenibacillus sp. HGF5]
 gi|328934864|gb|EGG31354.1| HTH domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
           + ++AE   +S   + + L  L + G+ +    G+ GG 
Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSRLGVPLYANEGKNGGY 60


>gi|291298981|ref|YP_003510259.1| hypothetical protein Snas_1462 [Stackebrandtia nassauensis DSM
          44728]
 gi|290568201|gb|ADD41166.1| protein of unknown function DUF43 [Stackebrandtia nassauensis DSM
          44728]
          Length = 402

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          VL   A H   P  + +++    +    +  I   L K GIV+T R
Sbjct: 45 VLRAIARH--EPVAVRELSRHVELPVPIVAAIGNELRKRGIVDTQR 88


>gi|271969373|ref|YP_003343569.1| hypothetical protein Sros_8175 [Streptosporangium roseum DSM 43021]
 gi|270512548|gb|ACZ90826.1| hypothetical protein Sros_8175 [Streptosporangium roseum DSM 43021]
          Length = 324

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           P   + +AE   IS     +    L  AG++ T R   GG  L
Sbjct: 265 PATTTSVAERVGISLASASEHTTVLRNAGLISTTR--TGGAVL 305


>gi|256827697|ref|YP_003151656.1| Mn-dependent transcriptional regulator [Cryptobacterium curtum
          DSM 15641]
 gi|256583840|gb|ACU94974.1| Mn-dependent transcriptional regulator [Cryptobacterium curtum
          DSM 15641]
          Length = 137

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +Y         R   IA     S+  + + +  L K G++       G + L    ++I
Sbjct: 16 IYLLQQRSDNVRAVDIAAEMGFSKPTISEWMGKLKKEGLISAA--ANGSIILSEHGEKI 72


>gi|229028447|ref|ZP_04184569.1| Transcriptional regulator, DeoR [Bacillus cereus AH1271]
 gi|228732896|gb|EEL83756.1| Transcriptional regulator, DeoR [Bacillus cereus AH1271]
          Length = 317

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +L++ +          +IA    IS   + + +  L   G+ +   +GR GG +
Sbjct: 10 ILIFASAK--RTFTAQEIANEFNISVRTVHRYILDLSDMGLPIYAEQGRNGGYK 61


>gi|225872062|ref|YP_002753517.1| hypothetical protein ACP_0376 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792700|gb|ACO32790.1| hypothetical protein ACP_0376 [Acidobacterium capsulatum ATCC
           51196]
          Length = 204

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLV---KAGIVETVRGRRGGVRLCRPADQ 72
            D   RIS+I +   ISE  +  +++ LV   +  +  +  G  GG  L    ++
Sbjct: 103 RDRAIRISEIRQRLEISERTIKDLVRSLVTDFRLPVGASRDGVDGGYYLVMTPEE 157


>gi|218703052|ref|YP_002410681.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI39]
 gi|218373038|emb|CAR20927.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI39]
          Length = 301

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|194016128|ref|ZP_03054743.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
 gi|194012483|gb|EDW22050.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
          Length = 320

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  +++  + +D      QI+E   ++   +++ +  L  +G+ + +  G  GG RL
Sbjct: 7  LLAILWM-LRSDKKITAKQISEKLEMNIRTVYRYIDTLSTSGVPIISEPGHNGGYRL 62


>gi|171778278|ref|ZP_02919484.1| hypothetical protein STRINF_00326 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282978|gb|EDT48402.1| hypothetical protein STRINF_00326 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 146

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           ++Y   + D    I  I     IS+     +++ + K G +E V
Sbjct: 40 AVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGFIEVV 84


>gi|146305348|ref|YP_001185813.1| GntR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573549|gb|ABP83081.1| transcriptional regulator, GntR family [Pseudomonas mendocina
          ymp]
          Length = 234

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 8  DYGIRVLMYCAIH-----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +Y ++ +            D       +AE   +S   L + L  L   G++    G+ 
Sbjct: 11 EYALQAIRRLIEEEGYRPGDALPSQRDLAERLGVSRASLREALSSLSALGLISVQAGKG 69


>gi|104781744|ref|YP_608242.1| GntR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110731|emb|CAK15444.1| putative transcriptional regulator, GntR family [Pseudomonas
           entomophila L48]
          Length = 249

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     SQI     +S   + + +  L  AG VET  G           GG R+    
Sbjct: 36  RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPSTGGFRI--DP 93

Query: 71  DQI-TILDVVKATEESFFV 88
             I T+ +V+   E    +
Sbjct: 94  ATIVTLREVLAVLELRIAL 112


>gi|70730919|ref|YP_260660.1| transcriptional regulator, GntR family/amidohydrolase family
          protein [Pseudomonas fluorescens Pf-5]
 gi|68345218|gb|AAY92824.1| transcriptional regulator, GntR family/amidohydrolase family
          protein [Pseudomonas fluorescens Pf-5]
          Length = 536

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
             D     S++AEA  +S   + + +  L  AG+V + +G
Sbjct: 30 RPGDRIPTESRLAEAFAVSRNVVREAVARLNSAGLVVSRQG 70


>gi|83589469|ref|YP_429478.1| signal-transduction protein [Moorella thermoacetica ATCC 39073]
 gi|83572383|gb|ABC18935.1| putative signal-transduction protein with CBS domains [Moorella
          thermoacetica ATCC 39073]
          Length = 211

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ------ 72
          +    P    QIA    ++   L   L  L  AGI+E       G  L     Q      
Sbjct: 14 VKRSGPITSQQIAAELNLTRATLRPDLAILTMAGILEARPRV--GYFLSSKPSQALVAEE 71

Query: 73 ---ITILDV 78
             I + D+
Sbjct: 72 IKKIRVGDI 80


>gi|33597941|ref|NP_885584.1| transcriptional regulator [Bordetella parapertussis 12822]
 gi|33574370|emb|CAE38708.1| probable transcriptional regulator [Bordetella parapertussis]
          Length = 266

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R++ + A  +D    +  IA+   +      ++LQ LV   +++ V+G R
Sbjct: 12 VRLIAFLASQDDD-VGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGAR 61


>gi|33591975|ref|NP_879619.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33602848|ref|NP_890408.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33571619|emb|CAE41109.1| probable transcriptional regulator [Bordetella pertussis Tohama
          I]
 gi|33577290|emb|CAE35847.1| probable transcriptional regulator [Bordetella bronchiseptica
          RB50]
 gi|332381391|gb|AEE66238.1| transcriptional regulator [Bordetella pertussis CS]
          Length = 266

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R++ + A  +D    +  IA+   +      ++LQ LV   +++ V+G R
Sbjct: 12 VRLIAFLASQDDD-VGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGAR 61


>gi|27376154|ref|NP_767683.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349293|dbj|BAC46308.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score = 34.9 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           A+    P   + IA    +S   + + L+ LV +G+VE       G  + +P        
Sbjct: 61  ALAPGSPLDETDIARRFNVSRTPVREALRQLVASGLVEAR--PHRGAVVAQP-------- 110

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
              + E    + E  A  +  C  + +  +++  R  L A  + L
Sbjct: 111 ---SIERLKSMFEAMAELEALCAGLAAERMSAAERHGLEAIHEEL 152


>gi|332716680|ref|YP_004444146.1| transcriptional regulator, ArsR family [Agrobacterium sp. H13-3]
 gi|325063365|gb|ADY67055.1| transcriptional regulator, ArsR family [Agrobacterium sp. H13-3]
          Length = 118

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H         IA A  + +  +   L  L +AG+V + R
Sbjct: 25 LVRHAPEGLPAGDIARALVVPQNTMSAHLNVLSRAGLVSSQR 66


>gi|295093513|emb|CBK82604.1| AraC-type DNA-binding domain-containing proteins [Coprococcus sp.
           ART55/1]
          Length = 253

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R + Y   H      I++I+E   +   +L K+   
Sbjct: 144 VRAMDYVYDHLHERIEITEISEFVGVERSYLSKLFHK 180


>gi|290958586|ref|YP_003489768.1| ArsR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260648112|emb|CBG71220.1| putative ArsR arsenic resistance operon repressor [Streptomyces
          scabiei 87.22]
          Length = 119

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        + ++  A  +S+  +   L+ L +AG+++  R
Sbjct: 41 LRLLSMIASRPGGEVCVCELTPAFDLSQPTISHHLKLLRQAGLIDCER 88


>gi|226307842|ref|YP_002767802.1| DeoR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226186959|dbj|BAH35063.1| putative DeoR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 322

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +++A+   I+   + + +  L   G  V+   G  GG RL   A+
Sbjct: 22 SGAELADKLAITPRTVRRDVDRLRDLGYPVDATVGVGGGYRLGAGAE 68


>gi|226306785|ref|YP_002766745.1| DeoR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226185902|dbj|BAH34006.1| putative DeoR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 234

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L+       D     S+++E   ++   + + ++ L+ +G  +E   G  GG RL
Sbjct: 7  LHALVEELRRQGDRGATCSRLSEEFGVTTRTIKRDIETLMMSGAAIEARSGPGGGYRL 64


>gi|222106466|ref|YP_002547257.1| transcriptional regulator ROK family [Agrobacterium vitis S4]
 gi|221737645|gb|ACM38541.1| transcriptional regulator ROK family [Agrobacterium vitis S4]
          Length = 396

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R  M   +H   P   + +A+   +S+  + ++++ L  AG V 
Sbjct: 15 SVRAAMDILLHQG-PTSRADLAKKTGLSKQTMSEVIRTLETAGWVR 59


>gi|254475124|ref|ZP_05088510.1| transcriptional repressor MdcY, GntR family [Ruegeria sp. R11]
 gi|214029367|gb|EEB70202.1| transcriptional repressor MdcY, GntR family [Ruegeria sp. R11]
          Length = 234

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+  A           +AE   IS   L ++L  L   G++++V G  
Sbjct: 33 CLLDYA--PGTRLSEVALAEEFGISRTPLRRVLGRLEDEGLLQSVHGAG 79


>gi|167582425|ref|ZP_02375299.1| transcriptional regulator, putative [Burkholderia thailandensis
          TXDOH]
          Length = 248

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          VL   A  +D P    ++AE   I +  + +I   LV AG +
Sbjct: 3  VLRRIAT-SDAPVSNRELAELTGIPKPTVSRITATLVSAGFL 43


>gi|29833078|ref|NP_827712.1| DeoR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29610200|dbj|BAC74247.1| putative DeoR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 344

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          +AE   ++   + + +  L + G  V    G  GG +L   A+
Sbjct: 25 LAERLGVTPRTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 67


>gi|15925302|ref|NP_372836.1| hypothetical protein SAV2312 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15927892|ref|NP_375425.1| hypothetical protein SA2105 [Staphylococcus aureus subsp. aureus
          N315]
 gi|21283961|ref|NP_647049.1| hypothetical protein MW2232 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49484528|ref|YP_041752.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|49487095|ref|YP_044316.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57652244|ref|YP_187111.1| hypothetical protein SACOL2304 [Staphylococcus aureus subsp.
          aureus COL]
 gi|82751905|ref|YP_417646.1| DeoR family regulatory protein [Staphylococcus aureus RF122]
 gi|87161961|ref|YP_494896.1| hypothetical protein SAUSA300_2261 [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88196228|ref|YP_501047.1| hypothetical protein SAOUHSC_02585 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|148268749|ref|YP_001247692.1| helix-turn-helix, type 11 domain-containing protein
          [Staphylococcus aureus subsp. aureus JH9]
 gi|150394816|ref|YP_001317491.1| hypothetical protein SaurJH1_2379 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151222425|ref|YP_001333247.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156980627|ref|YP_001442886.1| hypothetical protein SAHV_2296 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|161510507|ref|YP_001576166.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140241|ref|ZP_03564734.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          str. JKD6009]
 gi|253314653|ref|ZP_04837866.1| hypothetical protein SauraC_00470 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253734276|ref|ZP_04868441.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255007089|ref|ZP_05145690.2| hypothetical protein SauraM_11490 [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257423795|ref|ZP_05600224.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257426475|ref|ZP_05602877.1| helix-turn-helix containing protein [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257429114|ref|ZP_05605501.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257431760|ref|ZP_05608123.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257794655|ref|ZP_05643634.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258408741|ref|ZP_05681025.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258422339|ref|ZP_05685251.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258439729|ref|ZP_05690475.1| DeoR family regulatory protein [Staphylococcus aureus A9299]
 gi|258442715|ref|ZP_05691275.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446586|ref|ZP_05694741.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A6300]
 gi|258450296|ref|ZP_05698388.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258452646|ref|ZP_05700647.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus A5948]
 gi|258455331|ref|ZP_05703291.1| DeoR family regulatory protein [Staphylococcus aureus A5937]
 gi|262048571|ref|ZP_06021455.1| hypothetical protein SAD30_0110 [Staphylococcus aureus D30]
 gi|262052283|ref|ZP_06024487.1| hypothetical protein SA930_0938 [Staphylococcus aureus 930918-3]
 gi|282893753|ref|ZP_06301985.1| DeoR family regulatory protein [Staphylococcus aureus A8117]
 gi|282902219|ref|ZP_06310112.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus C160]
 gi|282906653|ref|ZP_06314501.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282911873|ref|ZP_06319669.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282917660|ref|ZP_06325411.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus D139]
 gi|282920892|ref|ZP_06328610.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus C427]
 gi|282922183|ref|ZP_06329879.1| DeoR family regulatory protein [Staphylococcus aureus A9765]
 gi|282926861|ref|ZP_06334488.1| DeoR family regulatory protein [Staphylococcus aureus A10102]
 gi|283767403|ref|ZP_06340318.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus H19]
 gi|283959093|ref|ZP_06376534.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|284025335|ref|ZP_06379733.1| hypothetical protein Saura13_12137 [Staphylococcus aureus subsp.
          aureus 132]
 gi|293497566|ref|ZP_06665420.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|294848850|ref|ZP_06789595.1| DeoR family regulatory protein [Staphylococcus aureus A9754]
 gi|295404993|ref|ZP_06814806.1| DeoR family regulatory protein [Staphylococcus aureus A8819]
 gi|296275005|ref|ZP_06857512.1| hypothetical protein SauraMR_01635 [Staphylococcus aureus subsp.
          aureus MR1]
 gi|297209872|ref|ZP_06926268.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297244051|ref|ZP_06927941.1| DeoR family regulatory protein [Staphylococcus aureus A8796]
 gi|297589616|ref|ZP_06948257.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|300910884|ref|ZP_07128334.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|304379499|ref|ZP_07362234.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|13702112|dbj|BAB43404.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 gi|14248086|dbj|BAB58474.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|21205403|dbj|BAB96097.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49242657|emb|CAG41378.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|49245538|emb|CAG44015.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57286430|gb|AAW38524.1| conserved domain protein [Staphylococcus aureus subsp. aureus
          COL]
 gi|82657436|emb|CAI81878.1| probable regulatory protein DeoR family [Staphylococcus aureus
          RF122]
 gi|87127935|gb|ABD22449.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87203786|gb|ABD31596.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147741818|gb|ABQ50116.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149947268|gb|ABR53204.1| Helix-turn-helix type 11 domain protein [Staphylococcus aureus
          subsp. aureus JH1]
 gi|150375225|dbj|BAF68485.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156722762|dbj|BAF79179.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|160369316|gb|ABX30287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253727692|gb|EES96421.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257272813|gb|EEV04915.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257276106|gb|EEV07557.1| helix-turn-helix containing protein [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257279595|gb|EEV10182.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257282639|gb|EEV12771.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257788627|gb|EEV26967.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840424|gb|EEV64884.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257841770|gb|EEV66207.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257847505|gb|EEV71507.1| DeoR family regulatory protein [Staphylococcus aureus A9299]
 gi|257851836|gb|EEV75770.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854654|gb|EEV77602.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A6300]
 gi|257856388|gb|EEV79297.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257859683|gb|EEV82530.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus A5948]
 gi|257862542|gb|EEV85310.1| DeoR family regulatory protein [Staphylococcus aureus A5937]
 gi|259159802|gb|EEW44842.1| hypothetical protein SA930_0938 [Staphylococcus aureus 930918-3]
 gi|259163429|gb|EEW47987.1| hypothetical protein SAD30_0110 [Staphylococcus aureus D30]
 gi|269941898|emb|CBI50308.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus TW20]
 gi|282315307|gb|EFB45691.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus C427]
 gi|282318415|gb|EFB48774.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus D139]
 gi|282323569|gb|EFB53885.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282329552|gb|EFB59073.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus Btn1260]
 gi|282591312|gb|EFB96385.1| DeoR family regulatory protein [Staphylococcus aureus A10102]
 gi|282593651|gb|EFB98644.1| DeoR family regulatory protein [Staphylococcus aureus A9765]
 gi|282596678|gb|EFC01637.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus C160]
 gi|282763811|gb|EFC03939.1| DeoR family regulatory protein [Staphylococcus aureus A8117]
 gi|283461282|gb|EFC08366.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus H19]
 gi|283471532|emb|CAQ50743.1| HTH domain family [Staphylococcus aureus subsp. aureus ST398]
 gi|283788685|gb|EFC27512.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|285817975|gb|ADC38462.1| DeoR family regulatory protein [Staphylococcus aureus 04-02981]
 gi|291096497|gb|EFE26755.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|294824229|gb|EFG40653.1| DeoR family regulatory protein [Staphylococcus aureus A9754]
 gi|294969938|gb|EFG45956.1| DeoR family regulatory protein [Staphylococcus aureus A8819]
 gi|296885545|gb|EFH24482.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297178829|gb|EFH38074.1| DeoR family regulatory protein [Staphylococcus aureus A8796]
 gi|297578127|gb|EFH96840.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|300887864|gb|EFK83059.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|302333945|gb|ADL24138.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus
          subsp. aureus JKD6159]
 gi|302752183|gb|ADL66360.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304342031|gb|EFM07935.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|312437274|gb|ADQ76345.1| DeoR family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH60]
 gi|312830658|emb|CBX35500.1| deoR-like helix-turn-helix domain protein [Staphylococcus aureus
          subsp. aureus ECT-R 2]
 gi|315129602|gb|EFT85593.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|315193572|gb|EFU23968.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          CGS00]
 gi|315198151|gb|EFU28482.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|320140148|gb|EFW32007.1| DeoR-like helix-turn-helix protein [Staphylococcus aureus subsp.
          aureus MRSA131]
 gi|320143418|gb|EFW35199.1| DeoR-like helix-turn-helix protein [Staphylococcus aureus subsp.
          aureus MRSA177]
 gi|323440006|gb|EGA97721.1| DeoR family regulatory protein [Staphylococcus aureus O11]
 gi|323443729|gb|EGB01342.1| DeoR family regulatory protein [Staphylococcus aureus O46]
 gi|329314996|gb|AEB89409.1| Helix-turn-helix, type 11 domain protein [Staphylococcus aureus
          subsp. aureus T0131]
 gi|329723475|gb|EGG60004.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21172]
 gi|329730078|gb|EGG66468.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21193]
 gi|329732090|gb|EGG68445.1| HTH domain protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 230

 Score = 34.5 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|333008132|gb|EGK27607.1| HTH-type transcriptional regulator sgrR domain protein [Shigella
          flexneri VA-6]
          Length = 154

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|288554004|ref|YP_003425939.1| hypothetical protein BpOF4_04915 [Bacillus pseudofirmus OF4]
 gi|288545164|gb|ADC49047.1| hypothetical protein BpOF4_04915 [Bacillus pseudofirmus OF4]
          Length = 216

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          T  T   I V++           +S+IAE   I+E+ + + LQ L K G++E+ 
Sbjct: 9  TNSTRQVILVML----KKSQQLTVSEIAEQLEITEMAVRRHLQGLEKEGLIESR 58


>gi|269203942|ref|YP_003283211.1| hypothetical protein SAAV_2374 [Staphylococcus aureus subsp.
          aureus ED98]
 gi|262076232|gb|ACY12205.1| hypothetical protein SAAV_2374 [Staphylococcus aureus subsp.
          aureus ED98]
          Length = 230

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|242398114|ref|YP_002993538.1| Manganese-dependent transcription regulator [Thermococcus
          sibiricus MM 739]
 gi|242264507|gb|ACS89189.1| Manganese-dependent transcription regulator [Thermococcus
          sibiricus MM 739]
          Length = 141

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M ++KR +  + V +Y    N    R+  I++   I    +   L+ L + G VE
Sbjct: 1  MEISKREEEYLEV-IYLLQKNKGVIRVKDISKRLGIRPPSVVDALKKLSEKGFVE 54


>gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa]
 gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa]
          Length = 372

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 20  HNDYPNRISQIAEACCISEL---FLFKILQPLVKAGIVETVR---GRRGG---VRLCRPA 70
           ++  P  + ++  A  I       ++++++ LV +G   T +   G+ GG     L  P 
Sbjct: 61  NHGRPITLPELVSALHIPPNKSSCIYRLMRMLVHSGFFATTKAVIGQGGGGEAYVLT-PP 119

Query: 71  DQITILD 77
            Q+ + D
Sbjct: 120 SQLLVKD 126


>gi|242278939|ref|YP_002991068.1| GntR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242121833|gb|ACS79529.1| GntR domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI------ 73
             D       +AE   +S   + + ++ L +  +VE+ RG  G   L      I      
Sbjct: 29  KGDKLPAERTLAERFKVSRSSIREAIKSLAQKNLVESRRG-DGTYILADMDADIFDAFAT 87

Query: 74  -------TILDVV---KATEESFF 87
                   I D+    +  E    
Sbjct: 88  AFSDQKKRISDIFQFRRVIEPEIA 111


>gi|111022508|ref|YP_705480.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110822038|gb|ABG97322.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 318

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++  +  +R      +         Q+A+   +S   +++ +  L  AG+ + T  G
Sbjct: 1  MRSSRLVEVMLR------LEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESG 54

Query: 60 RRGGVRL 66
            GG+RL
Sbjct: 55 PGGGIRL 61


>gi|58582387|ref|YP_201403.1| repressor [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188576125|ref|YP_001913054.1| repressor [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426981|gb|AAW76018.1| repressor [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188520577|gb|ACD58522.1| repressor [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 322

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITIL 76
          +          +AE   I    L + ++ L   G  V    G  GG RL + A  + +L
Sbjct: 2  LQGGRSWSGVALAERLDIHPRSLRRDIERLRALGYSVHAAPGSGGGDRLGQGAAALPLL 60


>gi|77465407|ref|YP_354910.1| GntR family transcriptional regulator [Rhodobacter sphaeroides
          2.4.1]
 gi|126463809|ref|YP_001044922.1| GntR domain-containing protein [Rhodobacter sphaeroides ATCC
          17029]
 gi|77389825|gb|ABA81009.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides
          2.4.1]
 gi|126105620|gb|ABN78150.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 239

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          Q+AE   +S   L   L+ L   GIV + +G  
Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72


>gi|26251242|ref|NP_757282.1| hypothetical protein c5436 [Escherichia coli CFT073]
 gi|91214011|ref|YP_543997.1| hypothetical protein UTI89_C5063 [Escherichia coli UTI89]
 gi|110644795|ref|YP_672525.1| hypothetical protein ECP_4688 [Escherichia coli 536]
 gi|117626671|ref|YP_859994.1| putative DNA-binding transcriptional regulator [Escherichia coli
          APEC O1]
 gi|191170830|ref|ZP_03032382.1| transcriptional regulator, GntR family [Escherichia coli F11]
 gi|227885157|ref|ZP_04002962.1| GntR family transcriptional regulator [Escherichia coli 83972]
 gi|300980759|ref|ZP_07175174.1| FCD domain protein [Escherichia coli MS 45-1]
 gi|300992660|ref|ZP_07179974.1| FCD domain protein [Escherichia coli MS 200-1]
 gi|301048320|ref|ZP_07195351.1| FCD domain protein [Escherichia coli MS 185-1]
 gi|306815446|ref|ZP_07449595.1| putative DNA-binding transcriptional regulator [Escherichia coli
          NC101]
 gi|331650492|ref|ZP_08351564.1| YjjM protein product [Escherichia coli M605]
 gi|26111675|gb|AAN83856.1|AE016772_34 Hypothetical protein yjjM [Escherichia coli CFT073]
 gi|91075585|gb|ABE10466.1| hypothetical protein YjjM [Escherichia coli UTI89]
 gi|110346387|gb|ABG72624.1| hypothetical protein YjjM [Escherichia coli 536]
 gi|115515795|gb|ABJ03870.1| putative DNA-binding transcriptional regulator [Escherichia coli
          APEC O1]
 gi|190909054|gb|EDV68641.1| transcriptional regulator, GntR family [Escherichia coli F11]
 gi|222036100|emb|CAP78845.1| Uncharacterized protein yjjM [Escherichia coli LF82]
 gi|227837986|gb|EEJ48452.1| GntR family transcriptional regulator [Escherichia coli 83972]
 gi|294492771|gb|ADE91527.1| transcriptional regulator, GntR family [Escherichia coli IHE3034]
 gi|300299828|gb|EFJ56213.1| FCD domain protein [Escherichia coli MS 185-1]
 gi|300305281|gb|EFJ59801.1| FCD domain protein [Escherichia coli MS 200-1]
 gi|300409174|gb|EFJ92712.1| FCD domain protein [Escherichia coli MS 45-1]
 gi|305851108|gb|EFM51563.1| putative DNA-binding transcriptional regulator [Escherichia coli
          NC101]
 gi|307556591|gb|ADN49366.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          ABU 83972]
 gi|307629526|gb|ADN73830.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UM146]
 gi|312948986|gb|ADR29813.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|315293289|gb|EFU52641.1| FCD domain protein [Escherichia coli MS 153-1]
 gi|320195311|gb|EFW69939.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli
          WV_060327]
 gi|323950556|gb|EGB46434.1| FCD domain-containing protein [Escherichia coli H252]
 gi|324014063|gb|EGB83282.1| FCD domain protein [Escherichia coli MS 60-1]
 gi|330909803|gb|EGH38313.1| regulator of L-galactonate catabolism YjjM [Escherichia coli
          AA86]
 gi|331040886|gb|EGI13044.1| YjjM protein product [Escherichia coli M605]
          Length = 301

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEMYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|332185871|ref|ZP_08387618.1| cyclic nucleotide-binding domain protein [Sphingomonas sp. S17]
 gi|332014229|gb|EGI56287.1| cyclic nucleotide-binding domain protein [Sphingomonas sp. S17]
          Length = 263

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 13  VLMYCAIHNDYPNRISQI--AEACCISELFLFKILQPLVKAGIVETVRG 59
            ++       +   ++QI  AEA  I+ + L ++L+ L + G++    G
Sbjct: 182 AMVDMVRDGAFRFPVTQIDLAEAAGITPVHLNRVLRSLRERGLMTFRSG 230


>gi|307718329|ref|YP_003873861.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192]
 gi|306532054|gb|ADN01588.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192]
          Length = 156

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 1  MH---LTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M    LT R  DY +  +   A       R+  IAEA  +S   +   L  L   G +E
Sbjct: 1  MRQEDLTSRMEDY-LEAIYVLA-KTKRVARVRDIAEALGVSRSTVSNTLHTLSDRGFIE 57


>gi|288870648|ref|ZP_06114837.2| transcriptional regulator, GntR family [Clostridium hathewayi DSM
           13479]
 gi|288866433|gb|EFC98731.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
           13479]
          Length = 515

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A+   +S   + K L  L + G V+T+ G+ 
Sbjct: 311 KQLAKQYDVSISTVRKALSELEQRGFVKTLNGKG 344


>gi|271966707|ref|YP_003340903.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270509882|gb|ACZ88160.1| helix-turn-helix type 11 domain protein [Streptosporangium roseum
          DSM 43021]
          Length = 327

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
               ++++E   +S   +++ ++ L  AG+ V   RG  GG RL
Sbjct: 17 GRMTATELSEELEVSVRTVYRDVEALSSAGVPVYADRGPAGGYRL 61


>gi|257386174|ref|YP_003175947.1| TrmB family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|257168481|gb|ACV46240.1| transcriptional regulator, TrmB [Halomicrobium mukohataei DSM
          12286]
          Length = 249

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           R++ Y     D   RI+++A    IS+  ++K L  L   G V+
Sbjct: 17 FRIVEYM-TETDGSVRITELATELDISKSTVYKHLNTLRSEGYVD 60


>gi|229165866|ref|ZP_04293632.1| hypothetical protein bcere0007_8420 [Bacillus cereus AH621]
 gi|228617571|gb|EEK74630.1| hypothetical protein bcere0007_8420 [Bacillus cereus AH621]
          Length = 305

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     +IS++AE   + E  +      +  AGI ++T +GR GG  L 
Sbjct: 1  MIEL-LHARGKMKISELAELLEVKERMVRIYRDDIEMAGIKIDTTKGRDGGYSLS 54


>gi|257785092|ref|YP_003180309.1| iron (metal) dependent repressor, DtxR family [Atopobium parvulum
          DSM 20469]
 gi|257473599|gb|ACV51718.1| iron (metal) dependent repressor, DtxR family [Atopobium parvulum
          DSM 20469]
          Length = 142

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 3  LTKRT-DYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LTK   DY +  +   A+     D   R   IAE   +S+  + K L  L +  +VE  R
Sbjct: 12 LTKAGEDY-LEAIYRIALEQPDDDKSVRSVDIAECLDVSKASVNKALSQLKEQDMVEQSR 70

Query: 59 GRRGGVRLCRPAD 71
             G V L +  +
Sbjct: 71 --YGRVTLTKEGE 81


>gi|169827861|ref|YP_001698019.1| MarR family transcriptional regulator [Lysinibacillus sphaericus
          C3-41]
 gi|168992349|gb|ACA39889.1| transcriptional regulator, MarR family [Lysinibacillus sphaericus
          C3-41]
          Length = 139

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++   + +  P+    IA    I +  + K++  LV+ G VET+ G+
Sbjct: 37 AVLRL-LKDKGPHSFVDIANFMSIEKPSVTKLVHKLVELGYVETMVGK 83


>gi|160915941|ref|ZP_02078149.1| hypothetical protein EUBDOL_01965 [Eubacterium dolichum DSM 3991]
 gi|158432417|gb|EDP10706.1| hypothetical protein EUBDOL_01965 [Eubacterium dolichum DSM 3991]
          Length = 306

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKIL---QPLVKAG-IVETVRGRRGGVRL 66
          ++   +        +Q+A     ++    +IL   + L +AG ++E+VRG  GG  L
Sbjct: 1  MLQL-LKARGMMSRTQLAAELGCNK---RQILDYKRELEEAGYLIESVRGAHGGYVL 53


>gi|149914510|ref|ZP_01903040.1| transcriptional regulator, GntR family, putative [Roseobacter sp.
          AzwK-3b]
 gi|149811303|gb|EDM71138.1| transcriptional regulator, GntR family, putative [Roseobacter sp.
          AzwK-3b]
          Length = 249

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELADQFEVSRPTVREALKRLAAQSLIRTQRGAFGG 73


>gi|146310586|ref|YP_001175660.1| GntR family transcriptional regulator [Enterobacter sp. 638]
 gi|145317462|gb|ABP59609.1| transcriptional regulator, GntR family [Enterobacter sp. 638]
          Length = 485

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+    P    ++A A  +S   +   L  L   G +E+  G  
Sbjct: 46 ALRLLILDGRLALDTRLPGE-RELASALNVSRTTVSSALAHLRDEGYLESRHGSG 99


>gi|15888817|ref|NP_354498.1| ArsR family transcriptional regulator [Agrobacterium tumefaciens
          str. C58]
 gi|15156575|gb|AAK87283.1| transcriptional regulator, ArsR family [Agrobacterium tumefaciens
          str. C58]
          Length = 117

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H        ++A    + +  +   L  L +AG+V++ R
Sbjct: 25 LVQHEPEGIPAGELARLIHVPQNTMSAHLATLARAGLVKSER 66


>gi|56963157|ref|YP_174884.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909396|dbj|BAD63923.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 158

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P  ++ +AE   +S+    KI   L+KAG V 
Sbjct: 62 EPINVTTLAERINVSKGNTSKITNKLLKAGWVR 94


>gi|320095037|ref|ZP_08026750.1| putative transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319978035|gb|EFW09665.1| putative transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 277

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGGVRL 66
          +    P   ++IAE   +S   +  I+  L+  G+V      E+  GR  G RL
Sbjct: 21 LAEGAPLSRAEIAERTGLSPSTVSTIMSDLLAEGLVHDTGDTESTGGR--GRRL 72


>gi|311111898|ref|YP_003983120.1| MarR family transcriptional regulator [Rothia dentocariosa ATCC
          17931]
 gi|310943392|gb|ADP39686.1| MarR family transcriptional regulator [Rothia dentocariosa ATCC
          17931]
          Length = 143

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +  P+   QIAE   I+   + K L  L   G+V +V
Sbjct: 47 SKEPSTSPQIAERMGITRQGVQKQLNLLRDEGLVMSV 83


>gi|281603695|gb|ADA76679.1| Transcriptional regulator, GntR family [Shigella flexneri
          2002017]
 gi|313646289|gb|EFS10751.1| bacterial regulatory s, gntR family protein [Shigella flexneri 2a
          str. 2457T]
 gi|332748864|gb|EGJ79288.1| transcriptional regulator, GntR family [Shigella flexneri
          4343-70]
 gi|332749117|gb|EGJ79540.1| transcriptional regulator, GntR family [Shigella flexneri K-671]
 gi|332749699|gb|EGJ80115.1| transcriptional regulator, GntR family [Shigella flexneri
          2747-71]
 gi|332768736|gb|EGJ98915.1| DNA-binding transcriptional regulator [Shigella flexneri 2930-71]
 gi|333009266|gb|EGK28722.1| transcriptional regulator, GntR family [Shigella flexneri K-218]
 gi|333011335|gb|EGK30749.1| transcriptional regulator, GntR family [Shigella flexneri K-272]
 gi|333012231|gb|EGK31613.1| transcriptional regulator, GntR family [Shigella flexneri K-227]
 gi|333022365|gb|EGK41603.1| transcriptional regulator, GntR family [Shigella flexneri K-304]
          Length = 304

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSQLRECGVLTQV---GNDYVIARKPD 72


>gi|281207077|gb|EFA81261.1| hypothetical protein PPL_06100 [Polysphondylium pallidum PN500]
          Length = 348

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGV------RLCRPADQ 72
           ++ P  I +IA+   I+  FL + ++ L   GI +  +  G  G        RL    + 
Sbjct: 49  DEGPRSIFEIAQERKINPDFLQRTMRALASQGIFKMVSKDGNDGMYDHTEASRLLEDPNG 108

Query: 73  I 73
           I
Sbjct: 109 I 109


>gi|253729980|ref|ZP_04864145.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253726427|gb|EES95156.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
          Length = 229

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|315497264|ref|YP_004086068.1| regulatory protein arsr [Asticcacaulis excentricus CB 48]
 gi|315415276|gb|ADU11917.1| regulatory protein ArsR [Asticcacaulis excentricus CB 48]
          Length = 101

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +      +IAE   +S+  L   L  L  AG+V+  R
Sbjct: 21 REREMSAGEIAERVSVSKPTLSGHLATLKAAGLVDVTR 58


>gi|52080985|ref|YP_079776.1| manganese transport transcriptional regulator [Bacillus
          licheniformis ATCC 14580]
 gi|52786361|ref|YP_092190.1| manganese transport transcriptional regulator [Bacillus
          licheniformis ATCC 14580]
 gi|319645057|ref|ZP_07999290.1| transcriptional regulator mntR [Bacillus sp. BT1B_CT2]
 gi|81385089|sp|Q65HG7|MNTR_BACLD RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|52004196|gb|AAU24138.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52348863|gb|AAU41497.1| MntR [Bacillus licheniformis ATCC 14580]
 gi|317392866|gb|EFV73660.1| transcriptional regulator mntR [Bacillus sp. BT1B_CT2]
          Length = 142

 Score = 34.5 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|329924711|ref|ZP_08279726.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
 gi|328940545|gb|EGG36867.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
          Length = 109

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1  MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M LT           R++         P  + +IAE   I +    K L+ L+ AG+VE
Sbjct: 1  MELTTFNALAEPSRFRIVNLL---QKGPLTVGEIAERLDIRQPQASKHLKVLLDAGLVE 56


>gi|318081075|ref|ZP_07988407.1| transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 515

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 10  GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           GIRVL+   +    P         ++A A  +S   +    + L +AG +E+ RG  
Sbjct: 71  GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 124


>gi|288930582|ref|YP_003434642.1| MarR family transcriptional regulator [Ferroglobus placidus DSM
          10642]
 gi|288892830|gb|ADC64367.1| transcriptional regulator, MarR family [Ferroglobus placidus DSM
          10642]
          Length = 83

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL++     D P   +QIA    +S   + + ++ L + G+VE
Sbjct: 18 VLLHL----DKPKTPAQIAGELKLSLPHVSRAIRELEREGLVE 56


>gi|253751377|ref|YP_003024518.1| GntR family transcriptional regulator [Streptococcus suis SC84]
 gi|253753278|ref|YP_003026418.1| GntR family regulatory protein [Streptococcus suis P1/7]
 gi|253755891|ref|YP_003029031.1| GntR family transcriptional regulator [Streptococcus suis BM407]
 gi|251815666|emb|CAZ51254.1| GntR family regulatory protein [Streptococcus suis SC84]
 gi|251818355|emb|CAZ56179.1| GntR family regulatory protein [Streptococcus suis BM407]
 gi|251819523|emb|CAR45102.1| GntR family regulatory protein [Streptococcus suis P1/7]
 gi|319757663|gb|ADV69605.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 124

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +AE   ++   + + L  L   G V +VR
Sbjct: 31 GDKLPTVRDLAEIAGVNPNTVQRALSDLETEGFVYSVR 68


>gi|228991476|ref|ZP_04151428.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus pseudomycoides DSM 12442]
 gi|228768278|gb|EEM16889.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus pseudomycoides DSM 12442]
          Length = 503

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +H D    +  IA+   IS L + K  + L   G V+  +G+ 
Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLETKGYVQIKQGKG 88


>gi|221369407|ref|YP_002520503.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides
          KD131]
 gi|221162459|gb|ACM03430.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides
          KD131]
          Length = 239

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          Q+AE   +S   L   L+ L   GIV + +G  
Sbjct: 40 QLAEELGVSRPVLRAALERLRDEGIVHSRQGAG 72


>gi|254380839|ref|ZP_04996205.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194339750|gb|EDX20716.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 288

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           + +   H D P  ++ +A     SE  L ++   L    + E VR R    RL     +
Sbjct: 8  AMEHIEAHLDQPLDVADLARIAMTSEYHLRRLFSALAGLPLSEYVRRR----RLTVAGAE 63

Query: 73 I-----TILDV 78
          +     T+LD+
Sbjct: 64 VLAGERTLLDI 74


>gi|187734623|ref|YP_001876735.1| transcriptional regulator, MarR family [Akkermansia muciniphila
          ATCC BAA-835]
 gi|187424675|gb|ACD03954.1| transcriptional regulator, MarR family [Akkermansia muciniphila
          ATCC BAA-835]
          Length = 141

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          RVL Y    +        I     +S      I+Q L + G V T
Sbjct: 37 RVLAYLMSRDGENVSQRDIERHLGVSHTTAKGIVQRLEQKGWVTT 81


>gi|146318195|ref|YP_001197907.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320382|ref|YP_001200093.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145689001|gb|ABP89507.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145691188|gb|ABP91693.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|292557996|gb|ADE30997.1| regulatory protein, GntR [Streptococcus suis GZ1]
          Length = 126

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +AE   ++   + + L  L   G V +VR
Sbjct: 33 GDKLPTVRDLAEIAGVNPNTVQRALSDLETEGFVYSVR 70


>gi|125554711|gb|EAZ00317.1| hypothetical protein OsI_22334 [Oryza sativa Indica Group]
          Length = 372

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 8/52 (15%)

Query: 10 GIRVLMYC----AIHN-DYPNRISQIAEACCISE---LFLFKILQPLVKAGI 53
           +R         AIH       IS IA    +       L +I++ L  AGI
Sbjct: 33 ALRCAADLGVPSAIHRRGGAATISDIAADTGVHLAKLPHLRRIMRVLTGAGI 84


>gi|118476565|ref|YP_893716.1| hypothetical protein BALH_0837 [Bacillus thuringiensis str. Al
          Hakam]
 gi|118415790|gb|ABK84209.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
          Hakam]
          Length = 315

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60
           ++K     +R ++   +H     + S++A    I    +    + +  A I +++ RGR
Sbjct: 4  KISK----ALR-MIEL-LHARGKMKSSELAYELKIDARMVRDYKKDIADANIDIKSERGR 57

Query: 61 RGGVRLC 67
           GG  + 
Sbjct: 58 YGGYYIS 64


>gi|88856558|ref|ZP_01131215.1| putative transcriptional regulator, AsnC family protein [marine
          actinobacterium PHSC20C1]
 gi|88814212|gb|EAR24077.1| putative transcriptional regulator, AsnC family protein [marine
          actinobacterium PHSC20C1]
          Length = 94

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
             +   +  D   R+  IAEA  I+E    +I+  LV  G +   R GRR   +L
Sbjct: 10 HAHVLLCVSKDSGMRLRDIAEAVGITERAAQRIIAELVADGYLTRERDGRRNRYQL 65


>gi|103487072|ref|YP_616633.1| NAD-dependent epimerase/dehydratase [Sphingopyxis alaskensis
           RB2256]
 gi|98977149|gb|ABF53300.1| NAD-dependent epimerase/dehydratase [Sphingopyxis alaskensis
           RB2256]
          Length = 310

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 15/82 (18%)

Query: 42  FKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDVVKA-TEESFFVAECFASHKIDC 99
            +++  L  +G  V  +    GG+     A+ I   D+V+A  E               C
Sbjct: 15  RQVVGKLAASGYRVRALTRAGGGI--ASAAETIATGDIVEADLEGLVA----------GC 62

Query: 100 PLVGSCGLT-SVLRKALNAFFD 120
             V +C     +LR+   AF +
Sbjct: 63  DAVVNCTARVHILRREDPAFAE 84


>gi|317401203|gb|EFV81848.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 235

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPAD 71
           +  +     +++AE   +S   + + +  L + GIVE  +G         G   L   A 
Sbjct: 30  LPGEKLPTETRLAEQFGVSRTVIREAVSRLRQDGIVEARQGSGVFVTGHDGNRALRIDAA 89

Query: 72  QI----TILDVV---KATEESFF 87
           ++     +L +V   +A E    
Sbjct: 90  ELASLDAVLHIVDLRRALETEIA 112


>gi|300710653|ref|YP_003736467.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali
          B3]
 gi|299124336|gb|ADJ14675.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali
          B3]
          Length = 217

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L   +     P  +++I+E   +S   +   L+ L +AG+VE+ 
Sbjct: 17 RILRLLSQK---PCYVTEISEYLGVSPKAVIDHLRKLEEAGLVESR 59


>gi|295680741|ref|YP_003609315.1| MarR family transcriptional regulator with acetyltransferase
          activity [Burkholderia sp. CCGE1002]
 gi|295440636|gb|ADG19804.1| transcriptional regulator, MarR family with acetyltransferase
          activity [Burkholderia sp. CCGE1002]
          Length = 306

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A   D     S +     ++  +L +++    K G+V   R
Sbjct: 41 VRILYELAHRAD--LTTSDLCRELGLNAGYLSRVISGFEKKGLVVKSR 86


>gi|300770977|ref|ZP_07080854.1| probable transcriptional regulator [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300762250|gb|EFK59069.1| probable transcriptional regulator [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 343

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           IRV    + ++  P  I++++    +S   + K  + L K GI+ +V G+  G  + 
Sbjct: 31 AIRV-GDLSKNDLLP-SINELSAILDLSRDTIEKGYRYLKKNGIILSVPGK--GYFIA 84


>gi|239626151|ref|ZP_04669182.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239520381|gb|EEQ60247.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 326

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
                 Q+ E   +S   ++K +  L + G  +E VR R  G RL   AD IT
Sbjct: 13 GGYLSGQQLCEHLGVSRTAVWKAVNDLREEGYIIEAVRNR--GYRLVEDADVIT 64


>gi|160931270|ref|ZP_02078671.1| hypothetical protein CLOLEP_00107 [Clostridium leptum DSM 753]
 gi|156869748|gb|EDO63120.1| hypothetical protein CLOLEP_00107 [Clostridium leptum DSM 753]
          Length = 124

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++       +    +  +A    ++   + K L  L + G+V + R
Sbjct: 21 LRIVSGMYTVGEKLPGVRDLAAQASVNPNTMQKALTELERQGLVYSQR 68


>gi|160880451|ref|YP_001559419.1| GntR family transcriptional regulator [Clostridium
          phytofermentans ISDg]
 gi|160429117|gb|ABX42680.1| transcriptional regulator, GntR family [Clostridium
          phytofermentans ISDg]
          Length = 120

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ND    +  +A+   I+   + K  Q L   G++ +V GR 
Sbjct: 31 ENDQLPSVRALAKELGINPNTVQKAYQELEHNGVIYSVVGRG 72


>gi|116619076|ref|YP_819447.1| transcriptional regulator [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|116097923|gb|ABJ63074.1| Transcriptional regulator [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 142

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 2  HLTKRTDYGI---RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           ++  T+Y I   RVL      N      + +     I   ++ +IL+ L K  ++E  R
Sbjct: 26 KISN-TEYSITEARVLFEIREKNGEYI-ANDLVAKLNIDRSYMSRILRKLKKDELIEKTR 83


>gi|302867466|ref|YP_003836103.1| class I and II aminotransferase [Micromonospora aurantiaca ATCC
          27029]
 gi|302570325|gb|ADL46527.1| aminotransferase class I and II [Micromonospora aurantiaca ATCC
          27029]
          Length = 463

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           L   A        + ++     +S + + +  + LV  G+VET  GR G     R A
Sbjct: 16 ALAADAAPGTRLPSVRELTAHHHVSPVTVAEATRRLVADGLVETRPGR-GAYVATRRA 72


>gi|260429993|ref|ZP_05783968.1| transcriptional regulator, IclR family [Citreicella sp. SE45]
 gi|260418916|gb|EEX12171.1| transcriptional regulator, IclR family [Citreicella sp. SE45]
          Length = 265

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R L    +  +  +  S IA A  +      ++L  LV  G +  + G+  G  L    +
Sbjct: 18 RGLSVLRLVGEGTSSASGIAAALDVPRSTAQRLLASLVAEGCLYRIPGK--GYVLG--PE 73

Query: 72 QITILDVVKATEESFFVA 89
           I +    +A +    +A
Sbjct: 74 LIHLGARARAQQPVLALA 91


>gi|256377871|ref|YP_003101531.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922174|gb|ACU37685.1| transcriptional regulator, ArsR family [Actinosynnema mirum DSM
           43827]
          Length = 334

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R  +   I        +Q+A     S   + +    L  AG+V+T R
Sbjct: 265 RAAVLLEIAGGGGLTTTQLARRLSTSAAAVSRHAAVLRSAGLVDTRR 311


>gi|226362016|ref|YP_002779794.1| ArsR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240501|dbj|BAH50849.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 109

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 9   YGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGG 63
           Y +    R  +  ++ +      S++AE   +S   L   L  L   G+V     GRR  
Sbjct: 15  YALSDTTRTQILLSLQSGPGYP-SELAEQIGVSRQILSNHLACLRGCGLVVAAPEGRRTR 73

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
             L  P        + +A ++   +    A     CP   S
Sbjct: 74  YELADP-------RIGRALDDLIGLV--LAVDPTCCPDAES 105


>gi|196035105|ref|ZP_03102511.1| HTH domain family [Bacillus cereus W]
 gi|195992169|gb|EDX56131.1| HTH domain family [Bacillus cereus W]
          Length = 317

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++   +H     RIS++A+   + E  +      +  AGI +ET +GR GG  L 
Sbjct: 10 MIEL-LHARGKMRISELADLLEVKERMVRIYRDDIEMAGIKIETTKGRYGGYSLS 63


>gi|157692610|ref|YP_001487072.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157681368|gb|ABV62512.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 310

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGG------VR 65
          V++  +       +   +AE   +S   +++ +  + +AGI V T +G  GG       R
Sbjct: 10 VMLLISKKQ---VQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGISLVEDYR 66

Query: 66 LCRPA---DQITILDVVKATE 83
          L +     D I +  ++ A E
Sbjct: 67 LEKKLFTDDDIEV--ILTALE 85


>gi|71907397|ref|YP_284984.1| GntR family transcriptional regulator [Dechloromonas aromatica
          RCB]
 gi|71847018|gb|AAZ46514.1| transcriptional regulator, GntR family [Dechloromonas aromatica
          RCB]
          Length = 255

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    +S   L + +Q L   G+V + +G  
Sbjct: 30 GDRLPPERELAAELGVSRPSLREAIQKLASKGMVTSRQGGG 70


>gi|21229851|ref|NP_635768.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766728|ref|YP_241490.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989795|ref|YP_001901805.1| hypothetical protein xccb100_0399 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111351|gb|AAM39692.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572060|gb|AAY47470.1| transcriptional regulator [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731555|emb|CAP49730.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 286

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +T     G+ VL   A H      +SQI+    IS   + ++L  L   G V    G +G
Sbjct: 42  MTSLGR-GLVVLSVFAQHA-REVTMSQISLETGISRAAVRRVLHTLAALGYV----GEQG 95

Query: 63  -GVRL 66
            G  L
Sbjct: 96  RGYVL 100


>gi|54023115|ref|YP_117357.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54014623|dbj|BAD55993.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 248

 Score = 34.5 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 12 RVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66
          R L             +S++A A  I      ++L  LV+AG +E    + R      R+
Sbjct: 11 RALSVLDCFRGGDSRGVSEVARAQGIPVSTAHRLLTALVRAGFLEKDPASSR-----YRI 65

Query: 67 CRPADQI 73
           R   + 
Sbjct: 66 GRALAEY 72


>gi|328950448|ref|YP_004367783.1| transcriptional regulator, Crp/Fnr family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450772|gb|AEB11673.1| transcriptional regulator, Crp/Fnr family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 230

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 12  RVLMYCAIHNDYPNRI-----------SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           RVL++ A     P                +A     + + +   L  L +AG+VE  RG
Sbjct: 152 RVLVWLAQRFGKPAEAGWYRIESELRQEDLAALAGTTRVTVTHTLSMLRQAGLVEGTRG 210


>gi|320160557|ref|YP_004173781.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
 gi|319994410|dbj|BAJ63181.1| ArsR family transcriptional regulator [Anaerolinea thermophila
          UNI-1]
          Length = 327

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRG 59
          +++L + ++H    + + +IAEA  +        +  L  AG+++T      RG
Sbjct: 43 LKILKFLSVHT---STVMEIAEALGLPPSTATLHINILENAGLIKTDLRPATRG 93


>gi|302386572|ref|YP_003822394.1| transcriptional regulator, AraC family [Clostridium saccharolyticum
           WM1]
 gi|302197200|gb|ADL04771.1| transcriptional regulator, AraC family [Clostridium saccharolyticum
           WM1]
          Length = 308

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            L+K T Y          + D   R+ Q+AE    S  +L +I Q 
Sbjct: 202 KLSKVTQY-------MRENYDQDLRLEQVAERFGFSPTYLSRIFQK 240


>gi|296535355|ref|ZP_06897556.1| GntR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296264323|gb|EFH10747.1| GntR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 478

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV---RLCRPAD 71
               +    I   A    +S+  + +  + LV +G +E  RG   G    +L RPA 
Sbjct: 26 LLAPGERLASIRAAAPHHGVSKNTMAEAYERLVASGHLEARRGA--GYFAAQLARPAR 81


>gi|283784271|ref|YP_003364136.1| substrate-binding protein [Citrobacter rodentium ICC168]
 gi|282947725|emb|CBG87280.1| putative substrate-binding protein [Citrobacter rodentium ICC168]
          Length = 566

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +    ++ RG+RG +R     + +  L + +
Sbjct: 24 VTVSKLAERCFCSERHIRTLLRQAQEAGWLVWQAQSGRGKRGLLRFLVTPESLRTLMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|253579965|ref|ZP_04857233.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848964|gb|EES76926.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 126

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 1  MHLTKRT-DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          M + K   DY +  ++  +        I  IA    +S+  +   ++ L + G +   R 
Sbjct: 1  MQIRKSAEDY-LEAILVLSKQGGGVRSI-DIATMLGVSKPSVSHAMKLLREDGYIAMDR- 57

Query: 60 RRGGVRLCRPADQITI 75
            G V L    + I +
Sbjct: 58 -YGTVTLLEKGNDIAV 72


>gi|225870381|ref|YP_002746328.1| GntR family regulatory protein [Streptococcus equi subsp. equi
          4047]
 gi|225699785|emb|CAW93586.1| GntR family regulatory protein [Streptococcus equi subsp. equi
          4047]
          Length = 123

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +++          D    + + AE   ++   + + L  L + GIV + R
Sbjct: 18 HIMLQIVSQEIKSGDQLPTVREYAEIAGVNPNTMQRALTELDREGIVYSQR 68


>gi|289582779|ref|YP_003481245.1| hypothetical protein Nmag_3131 [Natrialba magadii ATCC 43099]
 gi|289532332|gb|ADD06683.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
          Length = 74

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +Y  +  D  +    +  A  I++  +  I++ L K G VE V GR    RL 
Sbjct: 27 LYLHVWPD--STADDLCGALGINKGTVLSIVRTLRKQGYVERVDGR---YRLS 74


>gi|150377174|ref|YP_001313769.1| regulatory protein ArsR [Sinorhizobium medicae WSM419]
 gi|150031721|gb|ABR63836.1| regulatory protein ArsR [Sinorhizobium medicae WSM419]
          Length = 116

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H  +      IA A  +    +   L  L +AG+V + R
Sbjct: 25 LVRHEPHGLPAGDIARALAVPHNTMSTHLNILARAGLVSSER 66


>gi|84489165|ref|YP_447397.1| phosphate uptake regulator [Methanosphaera stadtmanae DSM 3091]
 gi|84372484|gb|ABC56754.1| predicted phosphate uptake regulator [Methanosphaera stadtmanae
          DSM 3091]
          Length = 301

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P+   +IAE   IS  ++ K+L+PL+   +++
Sbjct: 20 EAPSTQDEIAEKLNISRRYVTKLLKPLIDENVIK 53


>gi|307705845|ref|ZP_07642685.1| putative transcriptional repressor [Streptococcus mitis SK597]
 gi|307620596|gb|EFN99692.1| putative transcriptional repressor [Streptococcus mitis SK597]
          Length = 146

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S +A    +S+  + K ++ LVK G++ET +
Sbjct: 42 HILMLL---SEESLTNSDLARRLNVSQAAVTKAIKSLVKEGMLETSK 85


>gi|260463588|ref|ZP_05811787.1| transcriptional regulator, GntR family [Mesorhizobium
          opportunistum WSM2075]
 gi|259030679|gb|EEW31956.1| transcriptional regulator, GntR family [Mesorhizobium
          opportunistum WSM2075]
          Length = 240

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L+  A          ++A+   IS   + ++L  L   G+V++V G  
Sbjct: 35 CLLDYA--PGSHLSEEELAQEFEISRTPVRRVLARLESEGLVQSVHGVG 81


>gi|302532661|ref|ZP_07285003.1| GntR family transcriptional regulator [Streptomyces sp. C]
 gi|302441556|gb|EFL13372.1| GntR family transcriptional regulator [Streptomyces sp. C]
          Length = 129

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++ +  +R +   A   D     +Q+A    ++     K  + L ++G+VE  +G  
Sbjct: 17 QIVQQVEQALR-MGALA-EGDKLPTAAQVAATTKVNPNTTLKAYRELERSGLVEVRQGSG 74


>gi|297202959|ref|ZP_06920356.1| helix-turn-helix domain-containing protein [Streptomyces sviceus
          ATCC 29083]
 gi|197711952|gb|EDY55986.1| helix-turn-helix domain-containing protein [Streptomyces sviceus
          ATCC 29083]
          Length = 321

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           L++           +++A    +SE    + L+ L+ +G+ V   RGR GG +L
Sbjct: 9  ALLFL--QARGRVTAAELAAELEVSERTARRDLEALLASGVPVYAQRGRGGGWQL 61


>gi|254393588|ref|ZP_05008720.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294812813|ref|ZP_06771456.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326441237|ref|ZP_08215971.1| IclR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197707207|gb|EDY53019.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294325412|gb|EFG07055.1| IclR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 252

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y +RVL   + H       +QIA    +    L  +L  L++ G VE
Sbjct: 16 YVLRVLETVSRHTGG-VTDAQIARETGLPTGHLAPLLAMLLREGYVE 61


>gi|167757736|ref|ZP_02429863.1| hypothetical protein CLOSCI_00067 [Clostridium scindens ATCC
          35704]
 gi|167664618|gb|EDS08748.1| hypothetical protein CLOSCI_00067 [Clostridium scindens ATCC
          35704]
          Length = 122

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L + G+V + R
Sbjct: 31 GDKLPSVRDLALEAAVNPNTMQKALSELERNGLVHSQR 68


>gi|149180217|ref|ZP_01858722.1| transcriptional repressor of the xylose operon [Bacillus sp.
          SG-1]
 gi|148852409|gb|EDL66554.1| transcriptional repressor of the xylose operon [Bacillus sp.
          SG-1]
          Length = 372

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 5  KRTDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----- 54
          K+ DY +     R L+  A+ N  P   + ++    +S+  +  I+  L+K  ++     
Sbjct: 2  KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61

Query: 55 -ETVR--GRRG 62
           E+ +  GR+G
Sbjct: 62 GESTKEGGRKG 72


>gi|254251961|ref|ZP_04945279.1| regulatory proteins [Burkholderia dolosa AUO158]
 gi|124894570|gb|EAY68450.1| regulatory proteins [Burkholderia dolosa AUO158]
          Length = 269

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  +  +A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALAAHSD-PVSLKDLAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|326325976|ref|YP_004250785.1| putative transcriptional regulator IclR [Vibrio nigripulchritudo]
 gi|323669027|emb|CBJ93069.1| Putative Transcriptional regulator IclR [Vibrio nigripulchritudo]
          Length = 266

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++     +     +++I++        L+++ Q L + G + +  G +   RL 
Sbjct: 32 MIELLARSREGASLTEISKKLDRPVATLYRVAQVLEQRGYIYS-EGPKSAYRLS 84


>gi|310789817|gb|EFQ25350.1| hypothetical protein GLRG_00494 [Glomerella graminicola M1.001]
          Length = 344

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS---IECL 130
           TI ++V+     F +     +    C     C L   LR+   A  DV+       +  L
Sbjct: 271 TIGEIVR----RFNMVR--ETRTQKCVFDQQCPLRQRLRELDEAVVDVIGSIQGQELSSL 324

Query: 131 VRNR 134
           V ++
Sbjct: 325 VTDK 328


>gi|297529556|ref|YP_003670831.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252808|gb|ADI26254.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3]
          Length = 248

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                    ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 33 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 75


>gi|257434720|ref|ZP_05610771.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus subsp. aureus M876]
 gi|282915166|ref|ZP_06322943.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus M899]
 gi|282925798|ref|ZP_06333446.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus C101]
 gi|293511143|ref|ZP_06669840.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M809]
 gi|293549750|ref|ZP_06672422.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|257285316|gb|EEV15432.1| helix-turn-helix type 11 domain-containing protein
          [Staphylococcus aureus subsp. aureus M876]
 gi|282312627|gb|EFB43031.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus C101]
 gi|282320887|gb|EFB51221.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus M899]
 gi|290918797|gb|EFD95873.1| transcriptional regulator, DeoR family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|291466130|gb|EFF08659.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M809]
          Length = 230

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|291303172|ref|YP_003514450.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572392|gb|ADD45357.1| transcriptional regulator, ArsR family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 111

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           A   +    ++++AE   IS+  + K L+ L +AG+V   RGR
Sbjct: 23 LARLANGDATVTELAEPLTISQPAVSKHLRVLERAGLV--SRGR 64


>gi|256821646|ref|YP_003145609.1| biotin/acetyl-CoA-carboxylase ligase [Kangiella koreensis DSM
          16069]
 gi|256795185|gb|ACV25841.1| biotin/acetyl-CoA-carboxylase ligase [Kangiella koreensis DSM
          16069]
          Length = 325

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +R L+   + +   +   ++A+   +S  +++K++Q L   G+  E+V  +  G RL + 
Sbjct: 9  LRQLISL-LKDGNFHSGQKLADELSVSRAYVWKLMQQLEALGLEFESVTRK--GYRLIKS 65


>gi|114705640|ref|ZP_01438543.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi
           HTCC2506]
 gi|114538486|gb|EAU41607.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi
           HTCC2506]
          Length = 235

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-ILDVVKATEESFF 87
           +I++   +S   + + +  L   G+V+ +R +RG V      D +  + DV+ A E    
Sbjct: 46  EISQRLGMSRTPVHQAIIQLQAEGMVD-LRSKRGVVIRALSPDDMREVYDVIVAVEGMAA 104

Query: 88  VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
                 +          C     L +   A    L    ++    +      + 
Sbjct: 105 FI---IASLPASEREAIC---DALEELNAAMERALEADDLDAWADHDGKFHSML 152


>gi|50955186|ref|YP_062474.1| MarR family transcriptional regulator [Leifsonia xyli subsp. xyli
          str. CTCB07]
 gi|50951668|gb|AAT89369.1| transcriptional regulator, MarR family [Leifsonia xyli subsp.
          xyli str. CTCB07]
          Length = 168

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 2  HLTKRTDYGIR-------VLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
           L++ T   +R        L Y   +++ +       +AE   IS     K+L  L +AG
Sbjct: 38 RLSRETRSALRVNENDMKALRYIIASMNAEVAVTAGALAEHLHISTASTTKLLDRLERAG 97

Query: 53 IV 54
           V
Sbjct: 98 HV 99


>gi|56420810|ref|YP_148128.1| GntR family transcriptional regulator [Geobacillus kaustophilus
          HTA426]
 gi|56380652|dbj|BAD76560.1| transcriptional regulator (GntR family) [Geobacillus kaustophilus
          HTA426]
          Length = 243

 Score = 34.5 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 20 HNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                    ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 28 QPGEMIPSERELAEMYDISRMTVRQAVNNLVNDGYLIRRRGKG 70


>gi|302523018|ref|ZP_07275360.1| hypothetical protein SSLG_05787 [Streptomyces sp. SPB78]
 gi|302431913|gb|EFL03729.1| hypothetical protein SSLG_05787 [Streptomyces sp. SPB78]
          Length = 696

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66
          R L   AI +     +++ A    +S   +   L  L   G+VET       G  GG   
Sbjct: 13 RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 69

Query: 67 CRPADQ 72
           RPA Q
Sbjct: 70 -RPARQ 74


>gi|295428894|ref|ZP_06821518.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|295127243|gb|EFG56885.1| DeoR family regulatory protein [Staphylococcus aureus subsp.
          aureus EMRSA16]
          Length = 233

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 12 LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 71

Query: 73 ITI 75
          I +
Sbjct: 72 IAL 74


>gi|239926766|ref|ZP_04683719.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291435090|ref|ZP_06574480.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291337985|gb|EFE64941.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 123

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 50 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLTSER 96


>gi|271969602|ref|YP_003343798.1| MarR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270512777|gb|ACZ91055.1| putative transcriptional regulator protein, MarR family
          [Streptosporangium roseum DSM 43021]
          Length = 163

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VLM  +   D   R++ +A+   +S   L +++  L + G+VE
Sbjct: 53 VLMQLSESPDRRLRMNDLADRVLLSRSGLTRLIDRLQRDGLVE 95


>gi|298528282|ref|ZP_07015686.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298511934|gb|EFI35836.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 109

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKI 44
          M +   + Y +R +   A        +   +  ++AE   IS   L++I
Sbjct: 1  MKVRTYSRYTLRAISLLATLIKTGRLEKRIKTQELAERAGISRDLLYRI 49


>gi|254505180|ref|ZP_05117331.1| transcriptional regulator, AsnC family [Labrenzia alexandrii
          DFL-11]
 gi|222441251|gb|EEE47930.1| transcriptional regulator, AsnC family [Labrenzia alexandrii
          DFL-11]
          Length = 170

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          +  A+  +     +++A+   +S   L++ L+ L K GI+        G R      +I+
Sbjct: 12 ILAALSKEGRLSKAELAKRVNLSPTPLWERLKRLEKHGIIS-------GYR-----AEIS 59

Query: 75 ILDVVKATE 83
          +  V    E
Sbjct: 60 LKQVAPHIE 68


>gi|297197101|ref|ZP_06914498.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714019|gb|EDY58053.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 244

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 6   RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           R+   +RV +      D       +AE   I E+ + + L+ + + G+++  RGR GG
Sbjct: 43  RSRIALRVRLQSVRPGDRLPDAGVLAEELGIGEITVRRALEGMCQDGLLDRRRGRAGG 100


>gi|218961515|ref|YP_001741290.1| hypothetical protein CLOAM1224 [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730172|emb|CAO81084.1| hypothetical protein CLOAM1224 [Candidatus Cloacamonas
          acidaminovorans]
          Length = 59

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
          +++   HN    R S++A     S   + +++  L K G+++     RGG   L R 
Sbjct: 1  MIFLVTHNPK-IRYSELARITGKSVATIKRLISKLKKDGLIKQSGSPRGGEWILTRD 56


>gi|229542596|ref|ZP_04431656.1| transcriptional regulator, GntR family [Bacillus coagulans 36D1]
 gi|229327016|gb|EEN92691.1| transcriptional regulator, GntR family [Bacillus coagulans 36D1]
          Length = 121

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +    + ++++   ++   + ++ Q L +  +V+T RG  
Sbjct: 28 RGEKLPSVRELSKELKVNPNTIQRVYQELEREELVKTQRGMG 69


>gi|77920094|ref|YP_357909.1| GntR transcriptional regulators family [Pelobacter carbinolicus
          DSM 2380]
 gi|77546177|gb|ABA89739.1| transcriptional regulator, GntR family [Pelobacter carbinolicus
          DSM 2380]
          Length = 243

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            +     +S+  L + L+ L   G +E  RG  GG
Sbjct: 37 KDLITQFGVSKHTLREALRSLEAMGFIEIKRGAGGG 72


>gi|21221815|ref|NP_627594.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|4585833|emb|CAB40927.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)]
          Length = 368

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 1   MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T  +    +R+  Y A          ++A+   ++   + + L  L KAG+V T R 
Sbjct: 286 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 341

Query: 60  RRGGVRL 66
            RG   L
Sbjct: 342 -RGRYVL 347


>gi|146319279|ref|YP_001198991.1| biotin--protein ligase [Streptococcus suis 05ZYH33]
 gi|146321483|ref|YP_001201194.1| biotin--protein ligase [Streptococcus suis 98HAH33]
 gi|223933160|ref|ZP_03625152.1| biotin/acetyl-CoA-carboxylase ligase [Streptococcus suis 89/1591]
 gi|253752317|ref|YP_003025458.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis SC84]
 gi|253754143|ref|YP_003027284.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis P1/7]
 gi|330833254|ref|YP_004402079.1| biotin--protein ligase [Streptococcus suis ST3]
 gi|145690085|gb|ABP90591.1| Biotin-(acetyl-CoA carboxylase) ligase [Streptococcus suis
          05ZYH33]
 gi|145692289|gb|ABP92794.1| Biotin-(acetyl-CoA carboxylase) ligase [Streptococcus suis
          98HAH33]
 gi|223898221|gb|EEF64590.1| biotin/acetyl-CoA-carboxylase ligase [Streptococcus suis 89/1591]
 gi|251816606|emb|CAZ52244.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis SC84]
 gi|251820389|emb|CAR46986.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis P1/7]
 gi|292558912|gb|ADE31913.1| Biotin--acetyl-CoA-carboxylase ligase [Streptococcus suis GZ1]
 gi|319758713|gb|ADV70655.1| biotin--protein ligase [Streptococcus suis JS14]
 gi|329307477|gb|AEB81893.1| biotin--protein ligase [Streptococcus suis ST3]
          Length = 318

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          +Y  +   +       +A+   IS   ++K ++ L   G+ +E  R R  G RL  
Sbjct: 7  IYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETHGLTIEAARNR--GYRLAE 60


>gi|300709912|ref|YP_003735726.1| hypothetical protein HacjB3_02705 [Halalkalicoccus jeotgali B3]
 gi|299123595|gb|ADJ13934.1| hypothetical protein HacjB3_02705 [Halalkalicoccus jeotgali B3]
          Length = 116

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL +   + D   +  +IA    + E  +  +L  L K  +V 
Sbjct: 24 HVLRFLYENRDRAWKAKEIASRTPVPENSIHPVLSRLAKQELVR 67


>gi|294628585|ref|ZP_06707145.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
 gi|292831918|gb|EFF90267.1| DeoR-family transcriptional regulator [Streptomyces sp. e14]
          Length = 345

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            +++AE   ++   + + +  L   G  V    G  GG +L   A+
Sbjct: 22 SGAELAERLGVTARTVRRDVDRLRDLGYPVNASPGTGGGYQLGAGAE 68


>gi|293604887|ref|ZP_06687284.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
 gi|292816715|gb|EFF75799.1| GntR family transcriptional regulator [Achromobacter piechaudii
           ATCC 43553]
          Length = 267

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 25/102 (24%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRR----------GGVRLCRPADQITILDV 78
           ++A    +S   + + L  L +  +V+++RG            GG+    PA    +  +
Sbjct: 69  ELAALFEVSRPVVRQALDRLREDQLVDSIRGSGTYVRAKPDLMGGMPAVDPAR--RVGHI 126

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           ++  E    +            +   C   + LR++ +   D
Sbjct: 127 LEGLE--LRMV-----------IEPECAYLAALRRSNDDLRD 155


>gi|253756077|ref|YP_003029217.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis BM407]
 gi|251818541|emb|CAZ56372.1| BirA bifunctional protein [includes: biotin operon repressor;
          biotin--[acetyl-CoA-carboxylase] synthetase]
          [Streptococcus suis BM407]
          Length = 318

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 15 MYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
          +Y  +   +       +A+   IS   ++K ++ L   G+ +E  R R  G RL  
Sbjct: 7  IYLLLKEREDYVSGEDLAQELGISRTSIWKAIRQLETHGLTIEAARNR--GYRLAE 60


>gi|269928845|ref|YP_003321166.1| transcriptional regulator, ArsR family [Sphaerobacter
          thermophilus DSM 20745]
 gi|269788202|gb|ACZ40344.1| transcriptional regulator, ArsR family [Sphaerobacter
          thermophilus DSM 20745]
          Length = 235

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70
          R +M   +        +++A    I+       L  LV  G++   V+GR    RL  P 
Sbjct: 19 RAVMLAELMGGRALTATELAARADIAPSTASAHLARLVDGGLLAVEVQGRHRYYRLAGP- 77

Query: 71 DQITILDVVKATE 83
                +V +  E
Sbjct: 78 ------EVARVIE 84


>gi|91788970|ref|YP_549922.1| GntR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91698195|gb|ABE45024.1| transcriptional regulator, GntR family [Polaromonas sp. JS666]
          Length = 268

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-----------ITIL 76
           ++I     +S   + + L  L  +G+VET  G  G   L  P  +            T+ 
Sbjct: 56  AEIMARFDVSRTVVRESLSRLQASGLVETRHGI-GTFVL--PPQESGNFRIMAEDFATVA 112

Query: 77  DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           DV+   E    + E  A+            L   ++ AL AF + + 
Sbjct: 113 DVISVLELRISL-ETEAAGLAAQRRTPENLL--AMQNALRAFRESIN 156


>gi|86358368|ref|YP_470260.1| MarR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282470|gb|ABC91533.1| putative transcriptional regulator protein, MarR family
          [Rhizobium etli CFN 42]
          Length = 305

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L     H       + +A    +   +L +IL+     G++ET 
Sbjct: 39 RILFEIGSHAG--VSATALARDLHLDPAYLSRILKRFRAEGLIETS 82


>gi|37525907|ref|NP_929251.1| hypothetical protein plu1987 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36785336|emb|CAE14280.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 259

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 5  KRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53
           R +Y  RVL Y   H        + ++A+A  IS   + ++ Q L  +G 
Sbjct: 17 TRAEY--RVLSYLTAHPLLIGQITVRELAKATFISPATIMRLCQKLGFSGY 65


>gi|84494983|ref|ZP_00994102.1| redox-sensing transcriptional repressor Rex [Janibacter sp.
          HTCC2649]
 gi|84384476|gb|EAQ00356.1| redox-sensing transcriptional repressor Rex [Janibacter sp.
          HTCC2649]
          Length = 230

 Score = 34.5 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          ++ L   A          ++A A  +S   L K L  L   G    VRG   G  + R A
Sbjct: 23 LQALTSLAERGISSVSSEELAAAAGVSSAKLRKDLSHLGSYG----VRGV--GYEVDRLA 76

Query: 71 DQIT 74
           +I+
Sbjct: 77 YEIS 80


>gi|333028425|ref|ZP_08456489.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332748277|gb|EGJ78718.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 525

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 10  GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           GIRVL+   +    P         ++A A  +S   +    + L +AG +E+ RG  
Sbjct: 63  GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 116


>gi|320352519|ref|YP_004193858.1| GntR family transcriptional regulator [Desulfobulbus propionicus
           DSM 2032]
 gi|320121021|gb|ADW16567.1| transcriptional regulator, GntR family [Desulfobulbus propionicus
           DSM 2032]
          Length = 239

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITI 75
              D      ++AE   +S   + + L  L  AG+V + +G  GG   + L       ++
Sbjct: 29  APGDKLPPERELAEMFGVSRPSVREALNILAAAGLVMSYQG--GGTVVLSLVDAGQGGSL 86

Query: 76  LDVV-----KATEESFFVAECFAS 94
            +++     +A E    V +C  S
Sbjct: 87  SELIRSQQERALE-VIEVRKCMES 109


>gi|289770899|ref|ZP_06530277.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289701098|gb|EFD68527.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 368

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 1   MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T  +    +R+  Y A          ++A+   ++   + + L  L KAG+V T R 
Sbjct: 286 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 341

Query: 60  RRGGVRL 66
            RG   L
Sbjct: 342 -RGRYVL 347


>gi|288573434|ref|ZP_06391791.1| putative transcriptional regulator, PaaX family
          [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569175|gb|EFC90732.1| putative transcriptional regulator, PaaX family
          [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 178

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +T +T   +R+L+   ++      + ++A+    S   +   L  L +AG++E+ 
Sbjct: 6  ITSKTR--VRLLLKLFLNPGSSGYLRELADEFGESTNSVRVELNRLAEAGLLESS 58


>gi|317047091|ref|YP_004114739.1| GntR domain-containing protein [Pantoea sp. At-9b]
 gi|316948708|gb|ADU68183.1| GntR domain protein [Pantoea sp. At-9b]
          Length = 261

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           Q+A    +S   L + +Q L+ +G++ + RG  GG  L +P +
Sbjct: 35 RQLAAEFGVSRSSLREAIQQLISSGVLISRRG--GGTWLRQPQE 76


>gi|302555417|ref|ZP_07307759.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302473035|gb|EFL36128.1| DeoR family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 254

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            L+  A+ +  P  ++ ++E   +S   + + L  L + G++  V G
Sbjct: 7  HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHG 54


>gi|256787006|ref|ZP_05525437.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 366

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 1   MHLTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           M +T  +    +R+  Y A          ++A+   ++   + + L  L KAG+V T R 
Sbjct: 284 MRMTALSHPVRMRICRYLARSA---YTTGELAQVHGMTAPEISRHLGVLKKAGLVTTRR- 339

Query: 60  RRGGVRL 66
            RG   L
Sbjct: 340 -RGRYVL 345


>gi|256851748|ref|ZP_05557136.1| transcriptional regulatory protein [Lactobacillus jensenii
          27-2-CHN]
 gi|260661535|ref|ZP_05862447.1| transcriptional regulatory protein [Lactobacillus jensenii
          115-3-CHN]
 gi|282933578|ref|ZP_06338948.1| transcriptional regulatory protein [Lactobacillus jensenii 208-1]
 gi|256615706|gb|EEU20895.1| transcriptional regulatory protein [Lactobacillus jensenii
          27-2-CHN]
 gi|260547592|gb|EEX23570.1| transcriptional regulatory protein [Lactobacillus jensenii
          115-3-CHN]
 gi|281302321|gb|EFA94553.1| transcriptional regulatory protein [Lactobacillus jensenii 208-1]
          Length = 248

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S + L + L  L   GI++T++G+ 
Sbjct: 44 ELAKEMNVSRMTLRQALAFLQDDGIIKTIKGKG 76


>gi|238023873|ref|YP_002908105.1| transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878538|gb|ACR30870.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 154

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +TD  I      A+  D    I+++AE+  +SE    + L+ L   G VE  RG
Sbjct: 6  KTDRAILA----AVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRG 55


>gi|297562285|ref|YP_003681259.1| ArsR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296846733|gb|ADH68753.1| transcriptional regulator, ArsR family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 115

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          R L   A   +    ++++AE   IS   + + L+ L +AG+V   RGR
Sbjct: 19 RAL--LARLAEGEATVNELAEPFPISLQAVSRHLKVLERAGLV--SRGR 63


>gi|226312428|ref|YP_002772322.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226095376|dbj|BAH43818.1| putative transcriptional regulator [Brevibacillus brevis NBRC
          100599]
          Length = 315

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +  A++        Q+A    +S   + + +Q L   G+   +  G  GG +
Sbjct: 10 IMMAVNKKKSFNAKQLASEFGVSTRTIMRDMQELSALGVPFYSEVGPNGGYK 61


>gi|254503295|ref|ZP_05115446.1| hypothetical protein SADFL11_3334 [Labrenzia alexandrii DFL-11]
 gi|222439366|gb|EEE46045.1| hypothetical protein SADFL11_3334 [Labrenzia alexandrii DFL-11]
          Length = 104

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
            R+LM   +  D       IAE   ++   +   L  L KAG++ T R GR 
Sbjct: 14 AFRLLM---MEGDQGLPSGAIAERLDVAPTRMSFHLATLEKAGLLNTRREGRH 63


>gi|156937078|ref|YP_001434874.1| 30S ribosomal protein S19e [Ignicoccus hospitalis KIN4/I]
 gi|156566062|gb|ABU81467.1| SSU ribosomal protein S19E [Ignicoccus hospitalis KIN4/I]
          Length = 155

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 39  LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
             + KILQ L KAG+V+ V+G+  G  L       ++LD
Sbjct: 98  SHIRKILQQLEKAGLVKKVKGQ--GRVLTPAGR--SVLD 132


>gi|111021284|ref|YP_704256.1| ArsR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820814|gb|ABG96098.1| possible transcriptional regulator, ArsR family protein
          [Rhodococcus jostii RHA1]
          Length = 109

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          D P     +A    +S   + + LQ L +AG+V 
Sbjct: 2  DGPLTAGDLAGRFDLSRPAVAEHLQVLRRAGLVR 35


>gi|108801611|ref|YP_641808.1| IclR family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870765|ref|YP_940717.1| regulatory proteins, IclR [Mycobacterium sp. KMS]
 gi|108772030|gb|ABG10752.1| transcriptional regulator, IclR family [Mycobacterium sp. MCS]
 gi|119696854|gb|ABL93927.1| regulatory protein, IclR [Mycobacterium sp. KMS]
          Length = 306

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
          +R+L + A        +S++A    +++     I+  L +AG +  VR       RL   
Sbjct: 22 VRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYL--VRDPADKTYRLG-- 77

Query: 70 ADQITIL 76
             IT+ 
Sbjct: 78 PSLITLG 84


>gi|88855919|ref|ZP_01130581.1| transcriptional regulator, ArsR family protein [marine
           actinobacterium PHSC20C1]
 gi|88814786|gb|EAR24646.1| transcriptional regulator, ArsR family protein [marine
           actinobacterium PHSC20C1]
          Length = 188

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 11  IRVLM--YCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--GRRGGVR 65
           + VL+  Y A         +S+I E   +S+  + K L+ L   G+V +VR  G+    R
Sbjct: 45  LTVLLEQYIASDSPSGELSVSEIVEKLDLSQPTVSKHLKVLRDHGLV-SVREDGQHRYYR 103

Query: 66  LCRPADQ 72
           L     +
Sbjct: 104 LDSSPLE 110


>gi|158313414|ref|YP_001505922.1| MarR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108819|gb|ABW11016.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec]
          Length = 176

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M L + T      LM  +       R+S +A AC +S   + +I+  L   G+V 
Sbjct: 44 MSLNEYT-----ALMLLSESPGLRLRMSDLAAACSLSISGMTRIVSRLQAQGLVR 93


>gi|332528446|ref|ZP_08404438.1| helix-turn-helix family protein 13 [Hylemonella gracilis ATCC
          19624]
 gi|332042125|gb|EGI78459.1| helix-turn-helix family protein 13 [Hylemonella gracilis ATCC
          19624]
          Length = 319

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++AE   +    L + +  L + G  V    G  GG  L
Sbjct: 24 AELAERLAVHPRTLRRDIDRLRQLGYPVHASSGVAGGYAL 63


>gi|328883529|emb|CCA56768.1| putative transcriptional regulator [Streptomyces venezuelae ATCC
          10712]
          Length = 325

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
                ++AE   +S   + + L  L  AGI V    GR GG +L
Sbjct: 17 GRMSARRLAEELGVSVRTVHRDLGRLHAAGIPVYAEHGRAGGYQL 61


>gi|320178272|gb|EFW53246.1| putative peptide transport system secreted peptide-binding
          protein [Shigella boydii ATCC 9905]
          Length = 172

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|262376341|ref|ZP_06069571.1| ArsR family transcriptional regulator [Acinetobacter lwoffii
          SH145]
 gi|262308942|gb|EEY90075.1| ArsR family transcriptional regulator [Acinetobacter lwoffii
          SH145]
          Length = 106

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          +++L       D    + +I E+  I +  L + L  L KA +V T R G++   RL  P
Sbjct: 31 LKILCVLV---DGEMNVQEIEESTDIHQPTLSQQLTVLRKADMVGTRREGKQIFYRLSDP 87


>gi|241666831|ref|YP_002984915.1| transcriptional regulator, histidine utilization repressor, GntR
          family [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862288|gb|ACS59953.1| transcriptional regulator, histidine utilization repressor, GntR
          family [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A     S + + K+L  L KAG++E  R ++ G  + +P  Q  IL++
Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAILEI 84


>gi|227537583|ref|ZP_03967632.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
          33300]
 gi|227242585|gb|EEI92600.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC
          33300]
          Length = 343

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           IRV    + ++  P  I++++    +S   + K  + L K GI+ +V G+  G  + 
Sbjct: 31 AIRV-GDLSKNDLLP-SINELSAILDLSRDTIEKGYRYLKKNGIILSVPGK--GYFIA 84


>gi|239818106|ref|YP_002947016.1| GntR family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804683|gb|ACS21750.1| GntR domain protein [Variovorax paradoxus S110]
          Length = 258

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            D     S +AE   +S   + + +  L   G++++ +G  
Sbjct: 33 EGDRLPTESALAEQFGVSRTVVREAVSRLKSLGLLDSRQGSG 74


>gi|197285951|ref|YP_002151823.1| ArsR family transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683438|emb|CAR44203.1| ArsR-family transcriptional regulator [Proteus mirabilis HI4320]
          Length = 107

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     +S++ E+  I +  L + L  L   G+V T R
Sbjct: 33 LLLLCQLSQGEKSVSELEESLGIRQPTLSQQLTVLRNEGLVNTRR 77


>gi|170289592|ref|YP_001739830.1| ArsR family transcriptional regulator [Thermotoga sp. RQ2]
 gi|69953824|gb|AAZ04320.1| unknown [Thermotoga sp. RQ2]
 gi|170177095|gb|ACB10147.1| transcriptional regulator, ArsR family [Thermotoga sp. RQ2]
          Length = 184

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+ +T   + +LM      D     S++AE   I+    ++ L  +VKAGI++ ++   G
Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68


>gi|24379621|ref|NP_721576.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|290580379|ref|YP_003484771.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|24377572|gb|AAN58882.1|AE014956_3 putative transcriptional regulator [Streptococcus mutans UA159]
 gi|254997278|dbj|BAH87879.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 123

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                +  +AE   ++   + +    L + G+V +VR
Sbjct: 31 GQQLATVRDLAEEAGVNPNTMQRAFTSLEQEGMVFSVR 68


>gi|318059618|ref|ZP_07978341.1| ROK family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318075603|ref|ZP_07982935.1| ROK family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 688

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66
          R L   AI +     +++ A    +S   +   L  L   G+VET       G  GG   
Sbjct: 5  RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 61

Query: 67 CRPADQ 72
           RPA Q
Sbjct: 62 -RPARQ 66


>gi|319781800|ref|YP_004141276.1| ArsR family transcription regulator [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317167688|gb|ADV11226.1| regulatory protein ArsR [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
          Length = 114

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + ++ Y A   +    +  IAE   +S+  L + L  L    +V+T R
Sbjct: 26 LLIMSYLA---EGEMSVGAIAEKVMLSQSALSQHLAKLRALDLVDTRR 70


>gi|254460954|ref|ZP_05074370.1| regulatory protein GntR, HTH [Rhodobacterales bacterium HTCC2083]
 gi|206677543|gb|EDZ42030.1| regulatory protein GntR, HTH [Rhodobacteraceae bacterium HTCC2083]
          Length = 242

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 27/142 (19%)

Query: 1   MHL--TKRTDY------GIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           M +  + + D        IR       L+     ++     ++++E   +S   + + L+
Sbjct: 1   MKIDPSSKADLSAQIAKAIRDAIVSGALIV----DERLPSEAELSEQFEVSRATVREALK 56

Query: 47  PLVKAGIVETVRGRRGGV---RLC-RPA--DQITILDVVKATEESFFVAEC---FASHKI 97
            L    ++ T RG  GG    RL  + A   QIT   ++ +     F   C   FA    
Sbjct: 57  RLAAQSLIRTQRGAFGGAFVNRLSFKEAYGQQITTSTLLLSMNAVSFEIACEARFALESA 116

Query: 98  DCPLVGSCGLTSVLRKALNAFF 119
             PL  +      L       F
Sbjct: 117 CAPLAATRRTADHLATMRAEIF 138


>gi|170289854|ref|YP_001736670.1| ArsR family transcriptional regulator [Candidatus Korarchaeum
          cryptofilum OPF8]
 gi|170173934|gb|ACB06987.1| transcriptional regulator, ArsR family [Candidatus Korarchaeum
          cryptofilum OPF8]
          Length = 173

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           P  +S+IAE   IS+    K ++ L  +GI+E  +
Sbjct: 25 EPLTLSEIAERLGISQPAALKHIRELESSGIIEAHK 60


>gi|209546272|ref|YP_002278162.1| ArsR family transcriptional regulator [Rhizobium leguminosarum
          bv. trifolii WSM2304]
 gi|209539129|gb|ACI59062.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 307

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 21/70 (30%)

Query: 10 GIRVL----------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           IR L          + CA     P  I+ IA+A  + +  +   +Q L +AG+VE+   
Sbjct: 16 AIRALSAPARVEMLKLLCAK---GPTNINDIAQALSLPQSTVATGIQILEEAGLVES--- 69

Query: 60 RRGGVRLCRP 69
               RL + 
Sbjct: 70 -----RLAKA 74


>gi|149200786|ref|ZP_01877761.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          TM1035]
 gi|149145119|gb|EDM33145.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          TM1035]
          Length = 239

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D     + +A    ++   + + L  L +AG++   RG   G  +     +  I   V+
Sbjct: 29 GDKLPTEAVLATRFGVNRHTVRRALAVLAEAGVIFARRGA--GAFVAHRPTEYPIGRRVR 86


>gi|146284539|ref|YP_001165492.1| GntR family transcriptional regulator [Enterobacter sp. 638]
 gi|145320672|gb|ABP62818.1| transcriptional regulator, GntR family [Enterobacter sp. 638]
          Length = 432

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 11 IRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          IR ++     +       + ++A    I+   +    + L  AG V + RGR G
Sbjct: 15 IRAMIQAGELVPGMMLPTLRELAGELGINRNTVALAYKRLTDAGFVIS-RGRNG 67


>gi|150397677|ref|YP_001328144.1| GntR family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150029192|gb|ABR61309.1| transcriptional regulator, GntR family [Sinorhizobium medicae
          WSM419]
          Length = 244

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 11 IRVLMYC-AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          +R  +   A          S++     +S   + + LQ L    ++ T RGR G   L R
Sbjct: 19 LRAAIESGAYPPGSKLPTESELCHQYDVSRSVVRQALQSLAHDNLIGTERGR-GAFVLDR 77

Query: 69 P 69
           
Sbjct: 78 K 78


>gi|55376536|ref|YP_134388.1| hypothetical protein pNG6142 [Haloarcula marismortui ATCC 43049]
 gi|55229261|gb|AAV44682.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 316

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          A+        +++A     S   L+ +L  L+ AG++   RG
Sbjct: 12 ALSTGREATPAELAAETGYSRDHLYDVLNELLAAGLLTETRG 53


>gi|52080537|ref|YP_079328.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|52785916|ref|YP_091745.1| hypothetical protein BLi02167 [Bacillus licheniformis ATCC 14580]
 gi|319645501|ref|ZP_07999733.1| hypothetical protein HMPREF1012_00766 [Bacillus sp. BT1B_CT2]
 gi|52003748|gb|AAU23690.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|52348418|gb|AAU41052.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317392387|gb|EFV73182.1| hypothetical protein HMPREF1012_00766 [Bacillus sp. BT1B_CT2]
          Length = 157

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          + LM+    N      S+I+ A  ++  F+ ++L  + K G+V
Sbjct: 41 KALMFLNEANGEGKMASEISRALHVTSPFVTQLLNRMEKKGLV 83


>gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 220

 Score = 34.5 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y   +       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMANPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|307546151|ref|YP_003898630.1| manganese transport regulator MntR [Halomonas elongata DSM 2581]
 gi|307218175|emb|CBV43445.1| manganese transport regulator MntR [Halomonas elongata DSM 2581]
          Length = 136

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV--RG 59
          A+H +   R S +AE   +S   + K++  L + G+V     RG
Sbjct: 34 ALHGEA--RASDLAECFGVSTAAVSKVIARLKRDGLVIARPYRG 75


>gi|297184421|gb|ADI20537.1| transcriptional regulators [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 233

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 3   LTKRTDYG-IR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           LT+RT Y  +R  ++          R S++  +  +S   + + +  L + G+VE     
Sbjct: 19  LTQRT-YSTLRDAIINLQFKPGELIRKSELCASLGVSRSPISEAISRLAQEGLVEVF--P 75

Query: 61  RGGVRLCR-PADQITILDVVK-ATE 83
           + G  + R   D+I     ++ A E
Sbjct: 76  QAGTYVARFSMDEIREGAFIREALE 100


>gi|300789672|ref|YP_003769963.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299799186|gb|ADJ49561.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 328

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILD 77
           + P   +++A     S   +   L  L +AG+V  VR   G   L  R A  +T+L+
Sbjct: 269 EPPRSTTELAARTGYSPGTVSYHLSALHRAGLVSKVR--DGRYVLYRRTAQAVTLLE 323


>gi|296268424|ref|YP_003651056.1| ArsR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296091211|gb|ADG87163.1| transcriptional regulator, ArsR family [Thermobispora bispora DSM
          43833]
          Length = 123

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  +  A  ++   +   L+ L +AG++E  R
Sbjct: 44 LRLLSLIASHEGGEVCVCDLTVAFDVTPPTISHHLKVLRQAGLIEGDR 91


>gi|221633153|ref|YP_002522378.1| regulatory protein, MarR [Thermomicrobium roseum DSM 5159]
 gi|221155466|gb|ACM04593.1| regulatory protein, MarR [Thermomicrobium roseum DSM 5159]
          Length = 154

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          ++VL   A     P  +S++AE   IS      +++ L + G+V
Sbjct: 40 LKVLFALACRG--PLTVSEVAERLRISPPTASHLIERLTQLGLV 81


>gi|154504602|ref|ZP_02041340.1| hypothetical protein RUMGNA_02108 [Ruminococcus gnavus ATCC
          29149]
 gi|153795084|gb|EDN77504.1| hypothetical protein RUMGNA_02108 [Ruminococcus gnavus ATCC
          29149]
          Length = 123

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L ++G+V + R
Sbjct: 31 GDRLPSVRDLAVEAAVNPNTMQKALSELERSGLVYSQR 68


>gi|152968253|ref|YP_001364037.1| TrmB family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151362770|gb|ABS05773.1| transcriptional regulator, TrmB [Kineococcus radiotolerans
          SRS30216]
          Length = 118

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          RVL+       YP   +++AE   +S   L   L  L   G+V +V
Sbjct: 28 RVLLALREAPGYP---AELAEQLGVSRQSLSNHLSCLRACGLVASV 70


>gi|221069175|ref|ZP_03545280.1| transcriptional regulator, GntR family [Comamonas testosteroni
           KF-1]
 gi|220714198|gb|EED69566.1| transcriptional regulator, GntR family [Comamonas testosteroni
           KF-1]
          Length = 225

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +        + ++EA  IS   L ++ + L K G++  V     GV +       +I+D+
Sbjct: 27  LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +       + EC A       L  +  +   L +   A  
Sbjct: 84  YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113


>gi|16263896|ref|NP_436688.1| putative transcriptional regulator protein [Sinorhizobium
          meliloti 1021]
 gi|307308108|ref|ZP_07587823.1| GntR domain protein [Sinorhizobium meliloti BL225C]
 gi|307316968|ref|ZP_07596410.1| GntR domain protein [Sinorhizobium meliloti AK83]
 gi|15140020|emb|CAC48548.1| probable transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306897590|gb|EFN28334.1| GntR domain protein [Sinorhizobium meliloti AK83]
 gi|306901311|gb|EFN31916.1| GntR domain protein [Sinorhizobium meliloti BL225C]
          Length = 233

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A   D       ++A    +S   + + L+ L   G++ + RG  
Sbjct: 28 AYKPDERLPTEHELATEFEVSRPIVREALKRLRDQGLIYSRRGAG 72


>gi|314935781|ref|ZP_07843133.1| transcriptional regulator, DeoR family [Staphylococcus hominis
          subsp. hominis C80]
 gi|313656346|gb|EFS20086.1| transcriptional regulator, DeoR family [Staphylococcus hominis
          subsp. hominis C80]
          Length = 234

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          +M   I   +    S +A+   +S   + + +  L   G+ +   +GR GG 
Sbjct: 13 MMSL-IQQGHKINASDLAKQFNVSTRTITRDINDLESKGVHIYAHKGRHGGY 63


>gi|299529516|ref|ZP_07042953.1| transcriptional regulator, GntR family protein [Comamonas
           testosteroni S44]
 gi|298722379|gb|EFI63299.1| transcriptional regulator, GntR family protein [Comamonas
           testosteroni S44]
          Length = 225

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +        + ++EA  IS   L ++ + L K G++  V     GV +       +I+D+
Sbjct: 27  LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +       + EC A       L  +  +   L +   A  
Sbjct: 84  YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113


>gi|298291274|ref|YP_003693213.1| ArsR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927785|gb|ADH88594.1| transcriptional regulator, ArsR family [Starkeya novella DSM 506]
          Length = 290

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+  A +         IA    +    +   L  L +AG+V + R
Sbjct: 26 AFRLLLRYAPYG---LAAGDIARLLAVPHNTMSTHLAQLERAGLVTSRR 71


>gi|256810409|ref|YP_003127778.1| TrmB family transcriptional regulator [Methanocaldococcus fervens
          AG86]
 gi|256793609|gb|ACV24278.1| transcriptional regulator, TrmB [Methanocaldococcus fervens AG86]
          Length = 94

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          N  P  I ++A+   +S   ++  L+ L  AG+VE+
Sbjct: 26 NKQPKNIYELAKELNLSRPVVYAHLRKLENAGLVES 61


>gi|228474841|ref|ZP_04059572.1| HTH domain protein [Staphylococcus hominis SK119]
 gi|228271504|gb|EEK12872.1| HTH domain protein [Staphylococcus hominis SK119]
          Length = 231

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          +M   I   +    S +A+   +S   + + +  L   G+ +   +GR GG 
Sbjct: 10 MMSL-IQQGHKINASDLAKQFNVSTRTITRDINDLESKGVHIYAHKGRHGGY 60


>gi|296139661|ref|YP_003646904.1| ArsR family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296027795|gb|ADG78565.1| transcriptional regulator, ArsR family [Tsukamurella
          paurometabola DSM 20162]
          Length = 126

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           ++    P    ++A +  IS   + + L+ L +AG+V   RG
Sbjct: 16 LSLLRAAPRTAGEVAASFEISRPAISRHLRVLREAGLVAAERG 58


>gi|148556977|ref|YP_001264559.1| MarR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502167|gb|ABQ70421.1| transcriptional regulator, MarR family [Sphingomonas wittichii RW1]
          Length = 175

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           R L + A + D    +S++     I++  L ++L  L + G++ET  GR
Sbjct: 62  RSLYFIARNPD--ITVSELLRLLGITKQSLGRVLNELAERGLIETRMGR 108


>gi|161525311|ref|YP_001580323.1| GntR domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189349952|ref|YP_001945580.1| GntR family transcriptional repressor for pyruvate dehydrogenase
           complex [Burkholderia multivorans ATCC 17616]
 gi|221201383|ref|ZP_03574422.1| GntR domain protein [Burkholderia multivorans CGD2M]
 gi|221208863|ref|ZP_03581861.1| GntR domain protein [Burkholderia multivorans CGD2]
 gi|221214056|ref|ZP_03587029.1| GntR domain protein [Burkholderia multivorans CGD1]
 gi|160342740|gb|ABX15826.1| GntR domain protein [Burkholderia multivorans ATCC 17616]
 gi|189333974|dbj|BAG43044.1| GntR family transcriptional repressor for pyruvate dehydrogenase
           complex [Burkholderia multivorans ATCC 17616]
 gi|221166233|gb|EED98706.1| GntR domain protein [Burkholderia multivorans CGD1]
 gi|221171319|gb|EEE03768.1| GntR domain protein [Burkholderia multivorans CGD2]
 gi|221178651|gb|EEE11059.1| GntR domain protein [Burkholderia multivorans CGD2M]
          Length = 253

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70
              D     +++  A  +S   + + +  +  +G++ET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMAAQGVSRTVVREAISRMQASGLIETRHGI-GSFVLEPSRRQALGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRATDAD----LAALRRALDAI 139


>gi|13959804|gb|AAK49001.1| USC3-2p [Myxococcus xanthus]
          Length = 208

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +R LM        P RI  +A AC +S   L + +  +V+ G +    G  G
Sbjct: 42 LRTLM-----AQGPCRIKDLALACGLSHSALSQTVAAMVRDGWLHAANGDDG 88


>gi|219668598|ref|YP_002459033.1| GntR family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219538858|gb|ACL20597.1| transcriptional regulator, GntR family [Desulfitobacterium
          hafniense DCB-2]
          Length = 241

 Score = 34.5 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D     +Q+ E   IS++ +   L+ L + G++E+ RG+ 
Sbjct: 30 GDALPSETQLGEQYGISKMTVRNGLRLLAQEGLIESFRGKG 70


>gi|326202904|ref|ZP_08192771.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium papyrosolvens
          DSM 2782]
 gi|325986981|gb|EGD47810.1| biotin/acetyl-CoA-carboxylase ligase [Clostridium papyrosolvens
          DSM 2782]
          Length = 326

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD-----QI 73
            D       I++A  +S   ++K +  L K G  +E+    + G R     D     +I
Sbjct: 11 EEDKYISGEDISKALNVSRTAVWKHINELRKDGYTIESS--SKKGYRFLEAPDIPDKREI 68

Query: 74 TI 75
          +I
Sbjct: 69 SI 70


>gi|318061320|ref|ZP_07980041.1| transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 533

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 10  GIRVLMYCAIHNDYPNRIS-----QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           GIRVL+   +    P         ++A A  +S   +    + L +AG +E+ RG  
Sbjct: 71  GIRVLV---LEGRVPVGARLPAERELASALAVSRTTVATAFEALREAGFLESRRGAG 124


>gi|302337932|ref|YP_003803138.1| biotin/acetyl-CoA-carboxylase ligase [Spirochaeta smaragdinae DSM
          11293]
 gi|301635117|gb|ADK80544.1| biotin/acetyl-CoA-carboxylase ligase [Spirochaeta smaragdinae DSM
          11293]
          Length = 312

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVR 58
          M +        R +++  + +        +A    +S + ++K +Q L + G V   + R
Sbjct: 1  MKVNTS-----RNILHM-LGSRECISGETMATHLGLSRVAVWKQIQQLRERGYVIESSSR 54

Query: 59 GRRGGVRLCRPADQ 72
          G     RL +  ++
Sbjct: 55 G----YRLIKLPEE 64


>gi|298529596|ref|ZP_07016999.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511032|gb|EFI34935.1| Radical SAM domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 362

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             A+H   P  I  +A    IS   + +++  L K+G+ +++ G  
Sbjct: 142 DLAVHGFSPPEIFYLAGRENIS---VSRVISRLKKSGL-DSIPGGG 183


>gi|284044263|ref|YP_003394603.1| IclR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948484|gb|ADB51228.1| transcriptional regulator, IclR family [Conexibacter woesei DSM
          14684]
          Length = 278

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +RVL   A        + ++ +A  + +  + ++L  +++ G VE  R   G  RL   
Sbjct: 29 ALRVLRIMAAPERSEWSLFELCQAANLPKATVHRLLGTMIEEGFVEHARNP-GYYRLGLE 87

Query: 70 AD 71
          A 
Sbjct: 88 AA 89


>gi|227500778|ref|ZP_03930827.1| GntR family transcriptional regulator [Anaerococcus tetradius
          ATCC 35098]
 gi|227217083|gb|EEI82441.1| GntR family transcriptional regulator [Anaerococcus tetradius
          ATCC 35098]
          Length = 120

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +    +  +A+   ++   + + L  L + G+ E+ R
Sbjct: 29 GEKILPVRDLAKTYEVNPNTVQRALSELEREGLCESRR 66


>gi|297205369|ref|ZP_06922765.1| hypothetical protein HMPREF0526_10397 [Lactobacillus jensenii
          JV-V16]
 gi|297149947|gb|EFH30244.1| hypothetical protein HMPREF0526_10397 [Lactobacillus jensenii
          JV-V16]
          Length = 97

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S + L + L  L   GI++T++G+ 
Sbjct: 44 ELAKEMNVSRMTLRQALAFLQDDGIIKTIKGKG 76


>gi|149913485|ref|ZP_01902018.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          AzwK-3b]
 gi|149812605|gb|EDM72434.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          AzwK-3b]
          Length = 240

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          + Y            D     + ++    ++   + + L  L + G++ T +G   GV +
Sbjct: 25 SRYA---------PGDKLPTEAALSTRFGVNRHTVRRALAQLAEDGMIHTRQGA--GVFV 73

Query: 67 CRPADQITILDVVK 80
                  I   V+
Sbjct: 74 THKPTDYPIGRRVR 87


>gi|148554798|ref|YP_001262380.1| MarR family transcriptional regulator [Sphingomonas wittichii
          RW1]
 gi|148499988|gb|ABQ68242.1| transcriptional regulator, MarR family [Sphingomonas wittichii
          RW1]
          Length = 154

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          RVLM        P  I+Q+A +  I+   + +I++ + +AG++++ 
Sbjct: 52 RVLMVLGEKAPRP--IAQVARSTVINISTMARIVERMTRAGLIDSR 95


>gi|115372893|ref|ZP_01460198.1| transcriptional regulator, MarR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818527|ref|YP_003950885.1| MarR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370160|gb|EAU69090.1| transcriptional regulator, MarR family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391599|gb|ADO69058.1| Transcriptional regulator, MarR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 166

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 28/114 (24%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +  L++     D P  + ++A    I+E  +  ++  L + G ++  R            
Sbjct: 50  VHALLWLG--QDGPLTMGELARRLGITEKTVTGVVDRLEREGHLQRER------------ 95

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
                        E   V  C  +            L  ++ +AL+   ++L  
Sbjct: 96  -----------VHEDRRVVRCRLTGSGQQTFQ---QLHQLVNQALSQLLEMLDG 135


>gi|119720166|ref|YP_920661.1| hypothetical protein Tpen_1260 [Thermofilum pendens Hrk 5]
 gi|119525286|gb|ABL78658.1| transcriptional regulator, AsnC family [Thermofilum pendens Hrk 5]
          Length = 274

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 2   HLTKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
            L +R + G+       ++     +     + +I EA  I    L + ++ L KAG +  
Sbjct: 202 RLKRRGEGGVVLEEDEAILDFLRRSGGRAYLKEIREALGIPSTTLLRRVRRLEKAGYLRL 261

Query: 57  VRGRRG 62
            +   G
Sbjct: 262 EKTPGG 267


>gi|78062855|ref|YP_372763.1| IclR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970740|gb|ABB12119.1| transcriptional regulator, IclR family [Burkholderia sp. 383]
          Length = 274

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 11 IRVLMYC-AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVR 65
          +R L    A+ +   P  +SQ+A    I +  L ++++ L   G V      RG   G+ 
Sbjct: 20 LRALAVLEALASAGQPVTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIA 79

Query: 66 LCRPADQ 72
          L   A Q
Sbjct: 80 LGPRAAQ 86


>gi|26246456|ref|NP_752495.1| hypothetical protein c0561 [Escherichia coli CFT073]
 gi|26106854|gb|AAN79039.1|AE016756_222 Hypothetical protein ybaE [Escherichia coli CFT073]
          Length = 571

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            +S++AE C  SE  +  +L+    AG +E    + RG+RG +R     + +    + +
Sbjct: 29 VTVSELAERCFCSERHVRTLLRQAQXAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 88

Query: 81 ATE 83
          A E
Sbjct: 89 ALE 91


>gi|88800142|ref|ZP_01115711.1| glycerol-3-phosphate regulon repressor [Reinekea sp. MED297]
 gi|88777123|gb|EAR08329.1| glycerol-3-phosphate regulon repressor [Reinekea sp. MED297]
          Length = 256

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L           ++  +A+   +S+  + K +  L + G+V   R   GGV L  P  
Sbjct: 10 RILAQL--QTTDLLQVDALADQFQVSQQTVRKDINQLSEQGLV---RRVHGGVSLPAPLH 64

Query: 72 QITI 75
            + 
Sbjct: 65 NASF 68


>gi|331004065|ref|ZP_08327547.1| hypothetical protein HMPREF0491_02409 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411651|gb|EGG91059.1| hypothetical protein HMPREF0491_02409 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 251

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M + + T+  +++L   A  N+    + +I E   I     + IL  LV  G++E   G 
Sbjct: 1  MKINRTTERSVQILQIIAKSNEG-LEMDEICERLSIPRTSCYDILVTLVHLGMLEVNTGV 59

Query: 61 RGGVRLCRPADQI 73
          +   ++   A +I
Sbjct: 60 KRSYKIGLNAYRI 72


>gi|330012911|ref|ZP_08307525.1| hypothetical protein HMPREF9538_05236 [Klebsiella sp. MS 92-3]
 gi|328533650|gb|EGF60357.1| hypothetical protein HMPREF9538_05236 [Klebsiella sp. MS 92-3]
          Length = 255

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             + +  + I +   +S  +++++L  L + G +   +G+
Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243


>gi|296166318|ref|ZP_06848755.1| ArsR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898327|gb|EFG77896.1| ArsR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 161

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +   +   + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 85  VRIAIVLQLRESHRC-VHELVDALGVPQPLVSQHLRILKAAGVVAGERSGREVLYRLADH 143

Query: 69  PADQITILDVVKATEES 85
               I +  V  A+E++
Sbjct: 144 HLAHIVVDAVAHASEDT 160


>gi|288936713|ref|YP_003440772.1| Crp/Fnr family transcriptional regulator [Klebsiella variicola
           At-22]
 gi|290510231|ref|ZP_06549601.1| hypothetical protein HMPREF0485_02001 [Klebsiella sp. 1_1_55]
 gi|288891422|gb|ADC59740.1| putative transcriptional regulator, Crp/Fnr family [Klebsiella
           variicola At-22]
 gi|289776947|gb|EFD84945.1| hypothetical protein HMPREF0485_02001 [Klebsiella sp. 1_1_55]
          Length = 255

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             + +  + I +   +S  +++++L  L + G +   +G+
Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243


>gi|260888615|ref|ZP_05899878.1| zinc ABC transporter, permease protein [Selenomonas sputigena ATCC
           35185]
 gi|330838096|ref|YP_004412676.1| ABC-type transporter, integral membrane subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260861648|gb|EEX76148.1| zinc ABC transporter, permease protein [Selenomonas sputigena ATCC
           35185]
 gi|329745860|gb|AEB99216.1| ABC-type transporter, integral membrane subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 366

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 14  LMYCAIHN-----DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +++   H         N +  IAE    SE  + ++ + L +AGIV     R GG  L
Sbjct: 295 IIHLGTHTAENLYSEENAVRDIAEHLRWSEREMRRVSERLKEAGIVR----RSGGYYL 348


>gi|281413172|ref|YP_003347251.1| ArsR family transcriptional regulator [Thermotoga naphthophila
          RKU-10]
 gi|281374275|gb|ADA67837.1| transcriptional regulator, ArsR family [Thermotoga naphthophila
          RKU-10]
          Length = 184

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+ +T   + +LM      D     S++AE   I+    ++ L  +VKAGI++ ++   G
Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68


>gi|253574842|ref|ZP_04852182.1| regulatory protein MarR [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251845888|gb|EES73896.1| regulatory protein MarR [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 145

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          ++Y  +H    + +SQIAE+  I+   +  I   LV  G V   RG
Sbjct: 41 MLYM-LHTSGTHTVSQIAESLGITSAAITGITDRLVTEGYVNRERG 85


>gi|238893533|ref|YP_002918267.1| hypothetical protein KP1_1436 [Klebsiella pneumoniae NTUH-K2044]
 gi|238545849|dbj|BAH62200.1| hypothetical protein KP1_1436 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 255

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             + +  + I +   +S  +++++L  L + G +   +G+
Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243


>gi|222083234|ref|YP_002542637.1| transcriptional regulator GntR family [Agrobacterium vitis S4]
 gi|221738614|gb|ACM39452.1| transcriptional regulator GntR family [Agrobacterium vitis S4]
          Length = 293

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
             ++YG           D        AE   I+   + + +  L+KAG++E+     GG 
Sbjct: 68  TSSEYG---------PGDRIPSERDFAETLGINRATVRRAVANLIKAGLLESN--GTGGT 116

Query: 65  RLCRPADQITILDVVKAT 82
           R+   A     LD+ ++ 
Sbjct: 117 RVA-AAKVARKLDIYRSI 133


>gi|254488230|ref|ZP_05101435.1| regulatory protein GntR, HTH [Roseobacter sp. GAI101]
 gi|214045099|gb|EEB85737.1| regulatory protein GntR, HTH [Roseobacter sp. GAI101]
          Length = 251

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74
           ++     ++++    +S   + + L+ L    ++ T RG  GG  + R       A QIT
Sbjct: 36  DERLPSEAELSLRFDVSRATVREALKRLAAQSLIRTQRGATGGAFVNRISFEAAQAQQIT 95

Query: 75  ILDVVKATEESFFVAECFASHKID--C-PLVGSCGLTSVLRKALNAFF 119
              ++ +  +  F   C A + ++  C PL         L    +   
Sbjct: 96  TSTLLLSMNDVSFETACEARYALERACAPLSADRRHLHHLTVMRDEIE 143


>gi|162286808|emb|CAP17166.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 172

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR----PADQITILDVV 79
               +IA+   IS   +++ ++ L +AGI + +  G+  G  L      P    T  +V 
Sbjct: 2   IPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFLVEGFLLPPVMFTAAEV- 58

Query: 80  KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQ 124
            A   +     C            +   + S+L+     +   L  
Sbjct: 59  GALITAGKFLNCHGDESFIKDFDSAMYKIKSILKHGEKNYAQELEN 104


>gi|148270880|ref|YP_001245340.1| SirA family protein [Thermotoga petrophila RKU-1]
 gi|147736424|gb|ABQ47764.1| SirA family protein [Thermotoga petrophila RKU-1]
          Length = 181

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          L+ +T   + +LM      D     S++AE   I+    ++ L  +VKAGI++ ++   G
Sbjct: 14 LSNQTR--LDILMLL---RDSCLTASEVAEKLKINPSTAYRYLNQMVKAGILKVLKTPEG 68


>gi|126437595|ref|YP_001073286.1| regulatory proteins, IclR [Mycobacterium sp. JLS]
 gi|126237395|gb|ABO00796.1| regulatory protein, IclR [Mycobacterium sp. JLS]
          Length = 306

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG-VRLCRP 69
          +R+L + A        +S++A    +++     I+  L +AG +  VR       RL   
Sbjct: 22 VRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYL--VRDPADKTYRLG-- 77

Query: 70 ADQITIL 76
             IT+ 
Sbjct: 78 PSLITLG 84


>gi|86157440|ref|YP_464225.1| hypothetical protein Adeh_1013 [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85773951|gb|ABC80788.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 245

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 11 IRV--LMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          +R   L+  A  +       + ++A    +S   + + L  L   G+ +    G  GG+R
Sbjct: 3  VRAARLLDLADRLRASAETTVDELAVGLGVSARTVRRDLALLRDRGMPITGQAGPGGGIR 62

Query: 66 L 66
          L
Sbjct: 63 L 63


>gi|260904929|ref|ZP_05913251.1| transcriptional regulator, ArsR family protein [Brevibacterium
          linens BL2]
          Length = 136

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          Y IR+L   A   +    ++ +     +    L + L  L +  +VE+ R   
Sbjct: 20 YRIRILELLAGAAE--VSVTDLQAETELEASHLSQHLAVLRRHRLVESERRAS 70


>gi|325689860|gb|EGD31864.1| biotin--[acetyl-CoA-carboxylase] ligase [Streptococcus sanguinis
          SK115]
          Length = 311

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
                D      +IA+   IS   ++K +Q L K GI +E+V+ R    RL 
Sbjct: 9  DILSQADDYVNGEKIAQELGISRTSIWKAIQKLEKEGIQIESVKNRS--YRLT 59


>gi|319789204|ref|YP_004150837.1| Like-Sm ribonucleoprotein core [Thermovibrio ammonificans HB-1]
 gi|317113706|gb|ADU96196.1| Like-Sm ribonucleoprotein core [Thermovibrio ammonificans HB-1]
          Length = 156

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61
          Y +   +Y   + ++A+    S   + K++  L + G ++  + RGR 
Sbjct: 16 YLSEFKEYSGTVEELAKLAGASTYLIKKVIGELEEEGFLKSDSKRGRG 63


>gi|315298298|gb|EFU57553.1| FCD domain protein [Escherichia coli MS 16-3]
          Length = 301

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   IS   +  ILQ L   G++  V G+     + R  +Q
Sbjct: 34 LAEIYNISRTTVRHILQHLSACGVLTLV-GKN--YVIARKPEQ 73


>gi|260430322|ref|ZP_05784295.1| transcriptional regulator, GntR family [Citreicella sp. SE45]
 gi|260418351|gb|EEX11608.1| transcriptional regulator, GntR family [Citreicella sp. SE45]
          Length = 224

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4  TKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +++    +R  ++   +    P   ++++E   +S+  + + +Q L   G++E
Sbjct: 13 SQQVHEALRARILALELAPGQPLSRAEVSETYGVSQTPVREAMQRLADEGLLE 65


>gi|317049155|ref|YP_004116803.1| GntR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950772|gb|ADU70247.1| transcriptional regulator, GntR family [Pantoea sp. At-9b]
          Length = 331

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 8  DYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +Y I    L       +    +  +AE   ++ + + ++ + L  A +V +  G  
Sbjct: 22 EYAITFGAL----KPGEQLPSVRDMAEQVGVAPMTVAQVYRELKAAELVYSKPGAG 73


>gi|315500272|ref|YP_004089075.1| transcriptional regulator, crp/fnr family [Asticcacaulis
           excentricus CB 48]
 gi|315418284|gb|ADU14924.1| transcriptional regulator, Crp/Fnr family [Asticcacaulis
           excentricus CB 48]
          Length = 250

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 10  GIRVLMYCAIHNDYPNRI----SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             R L   A+       I     Q++    +   ++ +++  L + G++ TVRGR
Sbjct: 154 AARWLT-LALDRTETATIPLTQDQLSSMLGVGRAYVSRVMGVLQRDGLLATVRGR 207


>gi|222530720|ref|YP_002574609.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457567|gb|ACM61828.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 718

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 8   DYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +Y I    R ++             QIAEA   +   + K+L  L   G V+ V G    
Sbjct: 507 EYAISKERREILEVIKQLGGSATPKQIAEALGKTRSNVNKLLLKLAGDGYVKAVNGI--- 563

Query: 64  VRLC 67
             L 
Sbjct: 564 YSLA 567


>gi|154245569|ref|YP_001416527.1| GntR domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154159654|gb|ABS66870.1| GntR domain protein [Xanthobacter autotrophicus Py2]
          Length = 238

 Score = 34.5 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      Q+AE   +S   + + +  L   G+V T +G  
Sbjct: 32 QPGERLPTEHQMAETYGVSRPIVREAVGRLKHDGLVTTRQGAG 74


>gi|329889711|ref|ZP_08268054.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568]
 gi|328845012|gb|EGF94576.1| regulatory protein ArsR [Brevundimonas diminuta ATCC 11568]
          Length = 111

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H        +IA+A  +    +   L  L +AG++ + R
Sbjct: 25 LVRHEPEGLPAGEIADALAVPANTMSAHLGVLSRAGLISSER 66


>gi|297163161|gb|ADI12873.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
          Length = 111

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 3   LTKRTDYGI----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV- 57
           LT+     +    R  +  A+  + P   +++A+   IS   L   L  L   GIV  V 
Sbjct: 11  LTRFGR-ALADPIRCRILLALR-EAPTHPAELADRLEISRTRLSNHLACLRDCGIVVAVP 68

Query: 58  RGRRGGVRLCRPADQITILDVVKATEESFFVAE----CFASHKIDC 99
            GRR    L        +   +     +    E    C  + +  C
Sbjct: 69  EGRRVRYELA----DTRLGHALDDLRGAILAVEADRTCPDAEEKGC 110


>gi|239834043|ref|ZP_04682371.1| Exu regulon transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
 gi|239822106|gb|EEQ93675.1| Exu regulon transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
          Length = 235

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +A++  +S   + + +  L   G+VET +G  
Sbjct: 40 LAQSFGVSRSVVREAIAQLRNEGLVETRQGVG 71


>gi|150376533|ref|YP_001313129.1| GntR family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150031080|gb|ABR63196.1| transcriptional regulator, GntR family [Sinorhizobium medicae
          WSM419]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +R ++     A+++  P    ++     +S + + + ++ L   G ++T  G+  G+ + 
Sbjct: 29 LRGMIERRELAVNDKLP-SERELVAVYGVSRITVRQAIKELENLGYLQTRPGK--GIYVT 85

Query: 68 RPADQITILDVVK 80
           PA    + +VV+
Sbjct: 86 EPAPVYEL-EVVR 97


>gi|145607361|ref|XP_361725.2| hypothetical protein MGG_04199 [Magnaporthe oryzae 70-15]
 gi|145014937|gb|EDJ99505.1| hypothetical protein MGG_04199 [Magnaporthe oryzae 70-15]
          Length = 735

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
          + +    +R ++Y   ++   N     ++   +S   L KIL+
Sbjct: 47 STQARCALRAMLYLRDNSGLANT----SDKLGLSASCLRKILR 85


>gi|134101241|ref|YP_001106902.1| hypothetical protein SACE_4709 [Saccharopolyspora erythraea NRRL
          2338]
 gi|291007769|ref|ZP_06565742.1| hypothetical protein SeryN2_24859 [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133913864|emb|CAM03977.1| hypothetical protein SACE_4709 [Saccharopolyspora erythraea NRRL
          2338]
          Length = 179

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 10 GIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRR 61
           +R L +       ++    P   + +A A  IS     + L+ LV  G+VE   VR +R
Sbjct: 13 ALRALAHPVRLRMLSLIWSAPRSAAGLARALGISHGLASQHLRKLVDVGLVELDEVRAKR 72

Query: 62 GG 63
          GG
Sbjct: 73 GG 74


>gi|94969987|ref|YP_592035.1| MarR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552037|gb|ABF41961.1| transcriptional regulator, MarR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 180

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +RVL+          RIS +A    IS   + ++L+ L   G+VE VRG  
Sbjct: 58  LRVLV-----AREGTRISDLAAVSAISPSAMTRVLEKLEARGLVERVRGAH 103


>gi|150017968|ref|YP_001310222.1| GntR family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904433|gb|ABR35266.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB
          8052]
          Length = 246

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                   ++++   +S   L + L  L   G+V  +RG+ 
Sbjct: 34 EGSRLPSEPELSKLIGVSRTTLRQALALLQDDGLVNNIRGKG 75


>gi|331696230|ref|YP_004332469.1| ArsR family transcriptional regulator [Pseudonocardia
          dioxanivorans CB1190]
 gi|326950919|gb|AEA24616.1| transcriptional regulator, ArsR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 290

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 17/45 (37%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++          + ++AE   IS+      ++ L   G +   R
Sbjct: 47 LLHAVAAGGRQIPVGELAEQLGISQSTCSHHVRKLADVGFLTVRR 91


>gi|325568630|ref|ZP_08144923.1| thioesterase [Enterococcus casseliflavus ATCC 12755]
 gi|325157668|gb|EGC69824.1| thioesterase [Enterococcus casseliflavus ATCC 12755]
          Length = 443

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRGIAKDLNVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVQIIEGDV 85


>gi|309951503|gb|ADO95169.1| putative ArsR family transcriptional regulator [Sinorhizobium sp.
          M14]
          Length = 119

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R+L+    H         IA A  + +  +   L  L +AG+V + R
Sbjct: 22 FRLLI---KHAPEGLPAGDIARALVVPQNTMSAHLNILSRAGLVTSQR 66


>gi|307943057|ref|ZP_07658402.1| phosphonate metabolism transcriptional regulator PhnF [Roseibium
          sp. TrichSKD4]
 gi|307773853|gb|EFO33069.1| phosphonate metabolism transcriptional regulator PhnF [Roseibium
          sp. TrichSKD4]
          Length = 237

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D     +Q+A    ++   + + L  LV  G++ T RG  
Sbjct: 26 GDKLPTEAQLAARFGVNRHTVRQSLAALVDDGVIFTRRGAG 66


>gi|296101582|ref|YP_003611728.1| GntR family transcriptional regulator [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295056041|gb|ADF60779.1| GntR family transcriptional regulator [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 473

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 10 GIRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+     A+    P    ++A A  +S   +   L  L + G +E+  G  
Sbjct: 34 ALRLLILDGRLALSTRLPGE-RELATALDVSRTTISSALAHLREEGYLESRHGSG 87


>gi|291286625|ref|YP_003503441.1| putative transcriptional regulator [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883785|gb|ADD67485.1| putative transcriptional regulator [Denitrovibrio acetiphilus DSM
           12809]
          Length = 435

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 21  NDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
            D P   I Q++E   ISE  + K ++ L + G VE  +G  GG
Sbjct: 386 GDNPEITIPQLSEIVGISETAIEKNIKYLRENGFVE-RQGTFGG 428


>gi|317154001|ref|YP_004122049.1| regulatory protein MarR [Desulfovibrio aespoeensis Aspo-2]
 gi|316944252|gb|ADU63303.1| regulatory protein MarR [Desulfovibrio aespoeensis Aspo-2]
          Length = 152

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          I  +     H   P  ++++A+   +S+  + +++  L K G+V
Sbjct: 42 IHAVAKLCDHG--PMSLTELADRAFVSKGAMSQLVARLEKKGLV 83


>gi|253575056|ref|ZP_04852395.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251845512|gb|EES73521.1| regulatory protein GntR [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 124

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           D    + ++A    I+   + +  Q L +  IVET RG
Sbjct: 31 GDKIPSVRELAAELQINPNTVQRTFQELEREAIVETKRG 69


>gi|227500308|ref|ZP_03930375.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
          35098]
 gi|227217594|gb|EEI82906.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
          35098]
          Length = 133

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + +++++  I++  + K  + L + G++ET  G  
Sbjct: 41 GDKFPSVRELSKSLSINQTTVSKAFKELDRLGLIETRPGIG 81


>gi|323339529|ref|ZP_08079805.1| GntR family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
 gi|323093060|gb|EFZ35656.1| GntR family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
          Length = 127

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +     ++I+    I+   + K +  LV+AG++E  RG  
Sbjct: 36 EGEQIPSTTEISRDFHINPATVLKGMNILVEAGLIEKRRGIG 77


>gi|226365027|ref|YP_002782810.1| DeoR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226243517|dbj|BAH53865.1| putative DeoR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 323

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  ++  +  +R      +         Q+A+   +S   +++ +  L  AG+ + T  G
Sbjct: 1  MRSSRLVEVMLR------LEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESG 54

Query: 60 RRGGVRL 66
            GG+RL
Sbjct: 55 PGGGIRL 61


>gi|149915523|ref|ZP_01904049.1| pyruvate dehydrogenase complex repressor [Roseobacter sp.
          AzwK-3b]
 gi|149810415|gb|EDM70258.1| pyruvate dehydrogenase complex repressor [Roseobacter sp.
          AzwK-3b]
          Length = 255

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
             +      ++AE   +S   L + +  L   G++ T  G             I + DV
Sbjct: 29 RPGERLPSERELAERLGVSRPSLREAVAELQDKGLLSTRAGAG-----------IFVADV 77

Query: 79 V 79
          +
Sbjct: 78 L 78


>gi|119964076|ref|YP_947741.1| GntR family transcriptional regulator [Arthrobacter aurescens
          TC1]
 gi|119950935|gb|ABM09846.1| putative transcriptional regulator, GntR family [Arthrobacter
          aurescens TC1]
          Length = 254

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 15 MYCAIHNDYPNRIS------QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AIH+      S       +A    +S   + K +  LV++G++   RG  
Sbjct: 33 IEAAIHSGVLEPGSRLENEIDLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 85


>gi|145594806|ref|YP_001159103.1| AsnC/Lrp family regulatory protein [Salinispora tropica CNB-440]
 gi|145304143|gb|ABP54725.1| transcriptional regulator, AsnC family [Salinispora tropica
          CNB-440]
          Length = 162

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R L++ A+ +D     +++A    +S   + + L  L +AG++   R
Sbjct: 24 RSLLH-ALRDDPRASAAELARQVGMSAPAVRERLHRLERAGVIRGYR 69


>gi|150017181|ref|YP_001309435.1| GntR family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149903646|gb|ABR34479.1| transcriptional regulator, GntR family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 239

 Score = 34.5 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +    S   + + +  L K G V++V+G+ 
Sbjct: 33 ELVDKFECSRNTVRRAISELSKDGYVKSVKGKG 65


>gi|307544088|ref|YP_003896567.1| ArsR family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307216112|emb|CBV41382.1| putative transcriptional regulator, ArsR family [Halomonas
          elongata DSM 2581]
          Length = 118

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   +                 +IA    +    +   L  L +AG+V + R
Sbjct: 13 LSQATR--LETFRVLVRFEPEGLPAGEIARLLGVPHNTMSTHLGVLSRAGLVSSRR 66


>gi|257878027|ref|ZP_05657680.1| transcriptional repressor CodY [Enterococcus faecium 1,230,933]
 gi|257881187|ref|ZP_05660840.1| transcriptional repressor CodY [Enterococcus faecium 1,231,502]
 gi|257884850|ref|ZP_05664503.1| transcriptional repressor CodY [Enterococcus faecium 1,231,501]
 gi|257889774|ref|ZP_05669427.1| transcriptional repressor CodY [Enterococcus faecium 1,231,410]
 gi|257892289|ref|ZP_05671942.1| transcriptional repressor CodY [Enterococcus faecium 1,231,408]
 gi|258616482|ref|ZP_05714252.1| transcriptional repressor CodY [Enterococcus faecium DO]
 gi|260559077|ref|ZP_05831263.1| transcriptional repressor CodY [Enterococcus faecium C68]
 gi|261207611|ref|ZP_05922296.1| transcriptional repressor CodY [Enterococcus faecium TC 6]
 gi|289565123|ref|ZP_06445576.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium D344SRF]
 gi|293556771|ref|ZP_06675334.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1039]
 gi|293563429|ref|ZP_06677878.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1162]
 gi|293568158|ref|ZP_06679494.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1071]
 gi|293570281|ref|ZP_06681350.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E980]
 gi|294614814|ref|ZP_06694709.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1636]
 gi|294617493|ref|ZP_06697124.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1679]
 gi|294622310|ref|ZP_06701353.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium U0317]
 gi|314938039|ref|ZP_07845349.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133a04]
 gi|314941975|ref|ZP_07848836.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133C]
 gi|314948772|ref|ZP_07852144.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0082]
 gi|314951790|ref|ZP_07854829.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133A]
 gi|314991803|ref|ZP_07857261.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133B]
 gi|314995844|ref|ZP_07860931.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133a01]
 gi|257812255|gb|EEV41013.1| transcriptional repressor CodY [Enterococcus faecium 1,230,933]
 gi|257816845|gb|EEV44173.1| transcriptional repressor CodY [Enterococcus faecium 1,231,502]
 gi|257820688|gb|EEV47836.1| transcriptional repressor CodY [Enterococcus faecium 1,231,501]
 gi|257826134|gb|EEV52760.1| transcriptional repressor CodY [Enterococcus faecium 1,231,410]
 gi|257828668|gb|EEV55275.1| transcriptional repressor CodY [Enterococcus faecium 1,231,408]
 gi|260074834|gb|EEW63150.1| transcriptional repressor CodY [Enterococcus faecium C68]
 gi|260077994|gb|EEW65700.1| transcriptional repressor CodY [Enterococcus faecium TC 6]
 gi|289163130|gb|EFD10977.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium D344SRF]
 gi|291589148|gb|EFF20960.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1071]
 gi|291592276|gb|EFF23890.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1636]
 gi|291596233|gb|EFF27495.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1679]
 gi|291598202|gb|EFF29300.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium U0317]
 gi|291601103|gb|EFF31392.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1039]
 gi|291604690|gb|EFF34175.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E1162]
 gi|291609688|gb|EFF38949.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium E980]
 gi|313589948|gb|EFR68793.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133a01]
 gi|313593614|gb|EFR72459.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133B]
 gi|313596069|gb|EFR74914.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133A]
 gi|313599227|gb|EFR78072.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133C]
 gi|313642614|gb|EFS07194.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0133a04]
 gi|313644838|gb|EFS09418.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium TX0082]
          Length = 263

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA++  I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|227551198|ref|ZP_03981247.1| transcriptional repressor CodY [Enterococcus faecium TX1330]
 gi|257896179|ref|ZP_05675832.1| transcriptional repressor CodY [Enterococcus faecium Com12]
 gi|293377179|ref|ZP_06623387.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium PC4.1]
 gi|227179666|gb|EEI60638.1| transcriptional repressor CodY [Enterococcus faecium TX1330]
 gi|257832744|gb|EEV59165.1| transcriptional repressor CodY [Enterococcus faecium Com12]
 gi|292644199|gb|EFF62301.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Enterococcus faecium PC4.1]
          Length = 263

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA++  I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|225026965|ref|ZP_03716157.1| hypothetical protein EUBHAL_01221 [Eubacterium hallii DSM 3353]
 gi|224955701|gb|EEG36910.1| hypothetical protein EUBHAL_01221 [Eubacterium hallii DSM 3353]
          Length = 326

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
            +      +I +   IS   ++K +  L K G  +E+V  +  G RL +  D +T
Sbjct: 11 QQEGFISGQRICDELGISRTAVWKYMNSLKKEGYEIESVTRK--GYRLLQSPDLLT 64


>gi|297203342|ref|ZP_06920739.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          sviceus ATCC 29083]
 gi|197711429|gb|EDY55463.1| helix-turn-helix type 11 domain-containing protein [Streptomyces
          sviceus ATCC 29083]
          Length = 113

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR----- 65
          RVL   A +     RI  IA  C ++E  + KI+  L + G +  VR GR    R     
Sbjct: 19 RVLAAIADNPS--TRIRDIAAHCRLTERAVQKIISDLEQDGYLSHVREGRTNSYRIDPGK 76

Query: 66 -LCRPAD 71
           L  PA+
Sbjct: 77 VLRHPAE 83


>gi|254388127|ref|ZP_05003363.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294817394|ref|ZP_06776036.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326446269|ref|ZP_08221003.1| gntR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197701850|gb|EDY47662.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|294322209|gb|EFG04344.1| GntR-family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 136

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++T   +R+     +  D      ++ EA  I+   + K  + L + G+VE   GR 
Sbjct: 17 QIVQQTKQALRLGTL--VPGDRLPTAKEVVEATAINPNTVLKAYRELEREGLVEPRPGRG 74


>gi|167586663|ref|ZP_02379051.1| GntR domain protein [Burkholderia ubonensis Bu]
          Length = 242

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--------LCRPA 70
              D     +++     +S   + + +  +  +G+VET  G  G           L    
Sbjct: 35  RPGDKLPTETEVMATQGVSRTVVREAISRMQASGLVETRHGI-GSFVLEPSRRQALGIDP 93

Query: 71  DQI-TILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAF 118
             I T+ DV+   E    + +EC +               + LR+AL+A 
Sbjct: 94  ATITTLRDVLAVLELRISLESECASLAAQRANDAD----LAALRRALDAI 139


>gi|121606428|ref|YP_983757.1| regulatory protein GntR, HTH [Polaromonas naphthalenivorans CJ2]
 gi|120595397|gb|ABM38836.1| transcriptional regulator, GntR family [Polaromonas
          naphthalenivorans CJ2]
          Length = 260

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
             D      ++ +A  IS   + + +  L  AG+VET  G  G   L     +  + D
Sbjct: 34 RPGDRLPPEPELVQAFGISRTVVRESMLRLQAAGLVETRHGI-GTFVLAPDPGRALLSD 91


>gi|110635317|ref|YP_675525.1| histidine utilization repressor [Mesorhizobium sp. BNC1]
 gi|110286301|gb|ABG64360.1| transcriptional regulator, histidine utilization repressor, GntR
          family [Chelativorans sp. BNC1]
          Length = 241

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
           +A     S + + K++  L K+G++E  R ++ G  +  P  Q  +L++    EE   +
Sbjct: 39 DLAVQYGCSRMTVNKVMTQLAKSGLIE--RRKKSGTFVAHPQAQSAVLEIHDIREEVQSL 96

Query: 89 A 89
           
Sbjct: 97 N 97


>gi|291526760|emb|CBK92346.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Eubacterium
          rectale M104/1]
          Length = 326

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          ++      D      ++     +S   ++K +  L +AG  +E  + +  G RL    D 
Sbjct: 5  ILRLLRSADGYISGQELCNRFGVSRTAVWKAINQLKEAGYEIEAQQNK--GYRLMAAPDL 62

Query: 73 ITILDV 78
          +T  ++
Sbjct: 63 MTEAEI 68


>gi|264676699|ref|YP_003276605.1| GntR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262207211|gb|ACY31309.1| transcriptional regulator, GntR family [Comamonas testosteroni
           CNB-2]
          Length = 225

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +        + ++EA  IS   L ++ + L K G++  V     GV +       +I+D+
Sbjct: 27  LSPGQRLSEAALSEALDISRNTLREVFRMLTKEGLL--VHEPNKGVSVAV-PSMASIIDI 83

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
            +       + EC A       L  +  +   L +   A  
Sbjct: 84  YRV----RRMIECQA-------LAQAYPMHPALTRMREAVE 113


>gi|290959313|ref|YP_003490495.1| MarR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260648839|emb|CBG71953.1| putative MarR family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 192

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +L   +   +   R++++AE   I+   L  ++  L K G+V 
Sbjct: 45 MLAALSEAPERRMRMTELAERLKITRSRLTYVVTRLEKDGLVR 87


>gi|257898816|ref|ZP_05678469.1| transcriptional repressor CodY [Enterococcus faecium Com15]
 gi|257836728|gb|EEV61802.1| transcriptional repressor CodY [Enterococcus faecium Com15]
          Length = 263

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA++  I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|257887685|ref|ZP_05667338.1| transcriptional repressor CodY [Enterococcus faecium 1,141,733]
 gi|257823739|gb|EEV50671.1| transcriptional repressor CodY [Enterococcus faecium 1,141,733]
          Length = 263

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
            ++ +      ++     S IA++  I+   +   L+ L  AGI+E+   G +G   
Sbjct: 191 AVQAIFEALDGDEGRLTASNIADSIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 247


>gi|257867186|ref|ZP_05646839.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC30]
 gi|257873521|ref|ZP_05653174.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC10]
 gi|257877296|ref|ZP_05656949.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC20]
 gi|257801242|gb|EEV30172.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC30]
 gi|257807685|gb|EEV36507.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC10]
 gi|257811462|gb|EEV40282.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus casseliflavus
          EC20]
          Length = 443

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRGIAKDLNVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVQIIEGDV 85


>gi|218509887|ref|ZP_03507765.1| probable transcriptional regulator protein, ROK family [Rhizobium
          etli Brasil 5]
          Length = 283

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R ++   IH   P   ++IA     ++  + +I+  L+  G++   R R G   L     
Sbjct: 26 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG---LRGQP- 81

Query: 72 QITILDVVKATEESFFVAECFA 93
                   A E       CFA
Sbjct: 82 ---------AIELEINPDACFA 94


>gi|86739698|ref|YP_480098.1| ArsR family transcriptional regulator [Frankia sp. CcI3]
 gi|86566560|gb|ABD10369.1| transcriptional regulator, ArsR family [Frankia sp. CcI3]
          Length = 267

 Score = 34.5 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           + ++A+   IS   + + L+ L +AG++   R   GG R
Sbjct: 29 TVGELAKPYGISLQAVSRHLKVLQEAGLI---RRPGGGHR 65


>gi|325961917|ref|YP_004239823.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468004|gb|ADX71689.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 130

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVE 55
          VL+  A+ ++ P R S++      ISE  L + L+ L + G+V 
Sbjct: 43 VLLLLAL-SEGPQRWSELRRRAEGISEKMLAQTLKTLERDGLVR 85


>gi|317132286|ref|YP_004091600.1| transcriptional regulator, Crp/Fnr family [Ethanoligenens
           harbinense YUAN-3]
 gi|315470265|gb|ADU26869.1| transcriptional regulator, Crp/Fnr family [Ethanoligenens
           harbinense YUAN-3]
          Length = 216

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +Q+A     S   + + L+ + + GI++T RG+
Sbjct: 175 AQVAARLGTSREVVTRCLRKMKRDGIIQTERGK 207


>gi|222149408|ref|YP_002550365.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
 gi|221736391|gb|ACM37354.1| transcriptional regulator ArsR family [Agrobacterium vitis S4]
          Length = 105

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C++       +  +A    +S+  L + L  L    +V+T R
Sbjct: 25 RLMILCSLVQGE-VPVGVLASQVGLSQSALSQHLSKLRAQKLVKTRR 70


>gi|210610326|ref|ZP_03288355.1| hypothetical protein CLONEX_00545 [Clostridium nexile DSM 1787]
 gi|210152556|gb|EEA83562.1| hypothetical protein CLONEX_00545 [Clostridium nexile DSM 1787]
          Length = 326

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
            +       Q+ E   +S   ++K+++ L   G  +E VR R  G R+    D ++  +
Sbjct: 10 RESKEYVSGQQLCERLQVSRTAVWKVIKQLENEGYQIEAVRNR--GYRIVECPDVLSQEE 67

Query: 78 VVKATEESFFVAECFASH 95
          +     ES    EC   H
Sbjct: 68 I-----ESLMQTECIGRH 80


>gi|206900504|ref|YP_002249996.1| transcription regulator, putative [Dictyoglomus thermophilum
          H-6-12]
 gi|206739607|gb|ACI18665.1| transcription regulator, putative [Dictyoglomus thermophilum
          H-6-12]
          Length = 252

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            + +IA+   ISE+ + + L+ L K G+++ VRG
Sbjct: 19 LTVQEIAKELSISEITVRRDLKFLEKQGLIKRVRG 53


>gi|239828658|ref|YP_002951282.1| TrmB family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808951|gb|ACS26016.1| transcriptional regulator, TrmB [Geobacillus sp. WCH70]
          Length = 141

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          T   IR+L Y   + +    I  +A+   +S     +  + L+K G+V   RG
Sbjct: 30 THQAIRLLQYIEKNGEA--TIGDLAKHLAVSHNTTSEHTKRLIKKGLVSKKRG 80


>gi|297579938|ref|ZP_06941865.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535584|gb|EFH74418.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 452

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       D    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGDLDGSLETLASRLGISDRYLRQLFQR 126


>gi|149195874|ref|ZP_01872931.1| transcriptional regulator, GntR family protein [Lentisphaera
          araneosa HTCC2155]
 gi|149141336|gb|EDM29732.1| transcriptional regulator, GntR family protein [Lentisphaera
          araneosa HTCC2155]
          Length = 229

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D P    +++ E+  +S   + + +Q L   GI+ ++ G  
Sbjct: 30 PDQPIPSEARLCESFGVSRTVVREAIQQLKSQGIIHSIPGSG 71


>gi|92112995|ref|YP_572923.1| manganese transport regulator MntR [Chromohalobacter salexigens DSM
           3043]
 gi|91796085|gb|ABE58224.1| iron dependent repressor [Chromohalobacter salexigens DSM 3043]
          Length = 139

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT-------- 74
              R S +AE   +S   + K++  L + G+   V     G+ L    + +         
Sbjct: 37  GEARASDLAECFGVSAAAVSKVITRLKRDGL--AVARPYRGIFLTEEGEALAKRVTARHR 94

Query: 75  -ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
            +LD ++A      VA   +       +   C       + +NA  D L +
Sbjct: 95  VVLDALRALGVPEEVARADSEG-----IEHHCS-----EETVNAMRDFLRR 135


>gi|56696283|ref|YP_166640.1| AraC family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678020|gb|AAV94686.1| transcriptional regulator, AraC family [Ruegeria pomeroyi DSS-3]
          Length = 323

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           M    R       L     +   P  I+ IA A  +SE  L ++   
Sbjct: 209 MRFETRNRVAFAALRLMRANLVPPLPIAAIARAQGVSERQLERVFAR 255


>gi|83955951|ref|ZP_00964462.1| hypothetical protein NAS141_04008 [Sulfitobacter sp. NAS-14.1]
 gi|83839715|gb|EAP78893.1| hypothetical protein NAS141_04008 [Sulfitobacter sp. NAS-14.1]
          Length = 395

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62
          R ++   +  + P   S +A    +S   +  IL+ L   G+    + VRG+ G
Sbjct: 24 RAILSL-LQRNGPTPGSDLARQTGLSAQTISVILRKLKSDGLTSQCKPVRGKVG 76


>gi|332667899|ref|YP_004450687.1| GntR family transcriptional regulator [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332336713|gb|AEE53814.1| transcriptional regulator, GntR family [Haliscomenobacter
          hydrossis DSM 1100]
          Length = 122

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          VLM      D    + ++A    ++   + +    L + GI+   RG   G  +   A +
Sbjct: 21 VLMEQVKAGDRALSVRELAAQVQVNPNTVVRSYGLLEREGILYNQRGL--GFYIAENALE 78


>gi|330958270|gb|EGH58530.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 244

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATVSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|329935184|ref|ZP_08285175.1| GntR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329305253|gb|EGG49111.1| GntR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 246

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 21 NDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
             P    + +A+   ++   + + L  L  +G+VE + GR       R  
Sbjct: 28 AGQPLPSEEALAKQFGVTRPTVRQGLTELRASGLVEAIMGRG---TFARSP 75


>gi|325287283|ref|YP_004263073.1| ArsR family transcriptional regulator [Cellulophaga lytica DSM
           7489]
 gi|324322737|gb|ADY30202.1| transcriptional regulator, ArsR family [Cellulophaga lytica DSM
           7489]
          Length = 467

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           A++ +    I ++A    IS+  + K +  L + G+++   G +GG
Sbjct: 404 AVNENSKVTIGELASKIGISDTAIGKNMDVLKELGLLD-REGTKGG 448


>gi|313887724|ref|ZP_07821406.1| IclR helix-turn-helix domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312846333|gb|EFR33712.1| IclR helix-turn-helix domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 249

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          ++      +    I++I+E   I      +IL  L+  G V
Sbjct: 11 VLDILKSENRELTIAEISEFLNIPPSTAHRILSTLIGVGYV 51


>gi|291526249|emb|CBK91836.1| birA, biotin-[acetyl-CoA-carboxylase] ligase region [Eubacterium
          rectale DSM 17629]
          Length = 326

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          ++      D      ++     +S   ++K +  L +AG  +E  + +  G RL    D 
Sbjct: 5  ILRLLRSADGYISGQELCNRFGVSRTAVWKAINQLKEAGYEIEAQQNK--GYRLMAAPDL 62

Query: 73 ITILDV 78
          +T  ++
Sbjct: 63 MTEAEI 68


>gi|302875123|ref|YP_003843756.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
 gi|307690251|ref|ZP_07632697.1| transcriptional regulator, GntR family protein [Clostridium
          cellulovorans 743B]
 gi|302577980|gb|ADL51992.1| transcriptional regulator, GntR family [Clostridium cellulovorans
          743B]
          Length = 231

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 8  DYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          DY  RVL    M   +         +++E   IS   + ++L  L    ++E
Sbjct: 14 DYAYRVLKENIMSLELKPGELLSEIELSEKLGISRTPIREVLMKLKSEHLIE 65


>gi|284034640|ref|YP_003384571.1| IclR family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813933|gb|ADB35772.1| transcriptional regulator, IclR family [Kribbella flavida DSM
          17836]
          Length = 252

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          + RT   +RVL + A     P  + +IA A  +     + +L+ ++  G V
Sbjct: 8  STRT---LRVLTFLATQPG-PVPMERIASAVGLPRSSTYHLLRAMIDEGFV 54


>gi|171185559|ref|YP_001794478.1| ArsR family transcriptional regulator [Thermoproteus neutrophilus
          V24Sta]
 gi|170934771|gb|ACB40032.1| transcriptional regulator, ArsR family [Thermoproteus
          neutrophilus V24Sta]
          Length = 105

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +++L++ A     P  I  IA+   I        L+ L +AG+VE  
Sbjct: 20 LKILLHLAR---RPTYIQDIAQTLGIPYALAHMHLKVLEEAGLVEGT 63


>gi|170721991|ref|YP_001749679.1| GntR domain-containing protein [Pseudomonas putida W619]
 gi|169759994|gb|ACA73310.1| GntR domain protein [Pseudomonas putida W619]
          Length = 249

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     SQI     +S   + + +  L  AG VET  G           GG R+  PA
Sbjct: 36  RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPATGGFRI-DPA 94

Query: 71  DQITILDVVKATEESFFV 88
             +T+ +V+   E    +
Sbjct: 95  TVVTLREVLAVLELRIAL 112


>gi|186471494|ref|YP_001862812.1| GntR domain-containing protein [Burkholderia phymatum STM815]
 gi|184197803|gb|ACC75766.1| GntR domain protein [Burkholderia phymatum STM815]
          Length = 243

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       ++E   +S   + + +  L   G++E+ +G  
Sbjct: 35 GDRLPTEHFLSENFGVSRNVVREAIASLRAQGLIESRQGIG 75


>gi|86360353|ref|YP_472241.1| GntR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284455|gb|ABC93514.1| probable transcriptional regulator protein, GntR family
          [Rhizobium etli CFN 42]
          Length = 240

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A     S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84


>gi|85715855|ref|ZP_01046833.1| Transcriptional regulatory protein, ArsR family protein
          [Nitrobacter sp. Nb-311A]
 gi|85697262|gb|EAQ35142.1| Transcriptional regulatory protein, ArsR family protein
          [Nitrobacter sp. Nb-311A]
          Length = 134

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM  ++  +    +++I  A  I +  L + L  L KA +V T R
Sbjct: 27 LMILSLLREGEKSVTEIDVATGIGQPALSQQLAELRKAELVTTRR 71


>gi|333023159|ref|ZP_08451223.1| hypothetical protein STTU_0663 [Streptomyces sp. Tu6071]
 gi|332743011|gb|EGJ73452.1| hypothetical protein STTU_0663 [Streptomyces sp. Tu6071]
          Length = 688

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGVRL 66
          R L   AI +     +++ A    +S   +   L  L   G+VET       G  GG   
Sbjct: 5  RALCVAAIRDLGRATVAETAARARLSRPTVEAALADLTAEGLVETAADQVQHGEAGG--- 61

Query: 67 CRPADQ 72
           RPA Q
Sbjct: 62 -RPARQ 66


>gi|329929542|ref|ZP_08283266.1| HTH domain protein [Paenibacillus sp. HGF5]
 gi|328936267|gb|EGG32716.1| HTH domain protein [Paenibacillus sp. HGF5]
          Length = 315

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +   ++      + ++A+   +S   + + LQ L + G+ + +  G  GG ++ + 
Sbjct: 10 LMMTVNRMRKFTVRELADQFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQVLKE 65


>gi|326439603|ref|ZP_08214337.1| IclR family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 231

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRL----CRPADQI 73
           +    +S+IA    + +    +++  LV  G++E  RG +G   GV L     R   QI
Sbjct: 15 GESELPLSEIARRAELPKATAHRLVAELVTEGLLE--RGEKGIRLGVALFVLGARVPGQI 72

Query: 74 TILDV 78
             D+
Sbjct: 73 KFRDL 77


>gi|325283488|ref|YP_004256029.1| exsB protein [Deinococcus proteolyticus MRP]
 gi|324315297|gb|ADY26412.1| exsB protein [Deinococcus proteolyticus MRP]
          Length = 233

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 54  VETVRGRRG-GVRLCRPADQITILDVVK-ATEESFFVA---ECFASHKIDCPLVGSCGLT 108
           + TV GR G G RL  P  +++ +D+V+ A E    V     C++     C L  SC + 
Sbjct: 151 LATVAGREGRGARLVAPLLEMSKVDIVRTALEVGVPVHLTWSCYSGGSEPCGLCDSCRIR 210

Query: 109 S 109
            
Sbjct: 211 D 211


>gi|293606254|ref|ZP_06688617.1| GntR family regulatory protein [Achromobacter piechaudii ATCC
          43553]
 gi|292815401|gb|EFF74519.1| GntR family regulatory protein [Achromobacter piechaudii ATCC
          43553]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           D     ++I+E   +S   + + L  L   G++   +G
Sbjct: 54 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 92


>gi|257440652|ref|ZP_05616407.1| transcriptional regulator, AraC family [Faecalibacterium
           prausnitzii A2-165]
 gi|257196975|gb|EEU95259.1| transcriptional regulator, AraC family [Faecalibacterium
           prausnitzii A2-165]
          Length = 325

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 4   TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           T++T+    +  +   + +    ++Q+AE   IS   L K+ + 
Sbjct: 206 TEQTELAHHLRDHLLTNREGYVSLAQLAEEHGISVSHLQKMFKQ 249


>gi|255292436|dbj|BAH89554.1| AsnC family transcriptional regulator [uncultured bacterium]
          Length = 153

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M +   TD  +R+L   A+  D    ++QIAEA  IS+    + +  +   GI+ + 
Sbjct: 1  MQILDETD--LRILR--AMQRDGGMTVAQIAEAAGISQSPCSRRIIQMQTKGIIASR 53


>gi|218681344|ref|ZP_03529241.1| ArsR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 215

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 34/121 (28%)

Query: 10  GIRVL----------MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            IR L          + CA     P  I+ IA+A  + +  +   +Q L  AG+V++   
Sbjct: 16  AIRALSAPARIEILKLLCAK---GPLNINDIAQALSLPQSTVATGIQILEDAGLVDS--- 69

Query: 60  RRGGVRLCRPAD---QI---TILDVVKATEES-------FFVAECFASHKIDCPLVGSCG 106
                RL +      +I   T  +++ + EES           E        C +   CG
Sbjct: 70  -----RLAKARKGNQKICSATYSEILISFEESAAQRANNIIEVEMPVGLYTSCDVHAPCG 124

Query: 107 L 107
           L
Sbjct: 125 L 125


>gi|254466506|ref|ZP_05079917.1| transcriptional regulator, DeoR family [Rhodobacterales bacterium
          Y4I]
 gi|206687414|gb|EDZ47896.1| transcriptional regulator, DeoR family [Rhodobacterales bacterium
          Y4I]
          Length = 248

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          M          R +++A    +SE  + + ++ L KAG    V+   GG  L  P    +
Sbjct: 1  MDALRRLGGSARSAELARMLDVSEETVRRTIKALDKAG---AVQRVHGGAFLAGPQSATS 57

Query: 75 IL 76
            
Sbjct: 58 FA 59


>gi|138895986|ref|YP_001126439.1| manganese transport transcriptional regulator [Geobacillus
          thermodenitrificans NG80-2]
 gi|196248878|ref|ZP_03147578.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          G11MC16]
 gi|167011808|sp|A4IQU0|MNTR_GEOTN RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|134267499|gb|ABO67694.1| Iron-dependent repressor family protein [Geobacillus
          thermodenitrificans NG80-2]
 gi|196211754|gb|EDY06513.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          G11MC16]
          Length = 141

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGKKIGQR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|115449989|ref|XP_001218748.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187697|gb|EAU29397.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 372

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
            R +  C           +IA  C  S   L ++L+ LV  G V
Sbjct: 59 AFRAI--CGQRKG--ITTHEIAAKCGASPSVLSQVLKVLVATGYV 99


>gi|20093615|ref|NP_613462.1| Mn-dependent transcriptional regulator [Methanopyrus kandleri
          AV19]
 gi|19886481|gb|AAM01392.1| Mn-dependent transcriptional regulator [Methanopyrus kandleri
          AV19]
          Length = 158

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 8  DYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          DY +  L   +        RIS+++E   +S+    ++++ L   G+VE  R   G V+L
Sbjct: 15 DY-LEALYLLSRRGSGRHVRISELSEYLEVSKPTALEMIRKLADRGLVEYER---GLVKL 70

Query: 67 CRPADQI 73
               +I
Sbjct: 71 TEKGREI 77


>gi|56420951|ref|YP_148269.1| manganese transport transcriptional regulator [Geobacillus
          kaustophilus HTA426]
 gi|261417725|ref|YP_003251407.1| manganese transport transcriptional regulator [Geobacillus sp.
          Y412MC61]
 gi|297529417|ref|YP_003670692.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          C56-T3]
 gi|319767464|ref|YP_004132965.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          Y412MC52]
 gi|81346869|sp|Q5KX85|MNTR_GEOKA RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|56380793|dbj|BAD76701.1| transcriptional regulator (manganese transport regulator)
          [Geobacillus kaustophilus HTA426]
 gi|261374182|gb|ACX76925.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          Y412MC61]
 gi|297252669|gb|ADI26115.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          C56-T3]
 gi|317112330|gb|ADU94822.1| iron (metal) dependent repressor, DtxR family [Geobacillus sp.
          Y412MC52]
          Length = 141

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +GR+ G R
Sbjct: 13 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGRKIGQR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|150389649|ref|YP_001319698.1| MarR family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149949511|gb|ABR48039.1| transcriptional regulator, MarR family [Alkaliphilus
          metalliredigens QYMF]
          Length = 141

 Score = 34.5 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T   IR+L Y   + +    I  +A+    S     + ++ L+K G+V   R
Sbjct: 30 THQAIRLLQYIDKNQE--TTIGDLAKHTNTSSNTASEHIKRLIKKGLVTKKR 79


>gi|329934313|ref|ZP_08284392.1| MarR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329305909|gb|EGG49764.1| MarR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 155

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +  + P R++++A A  IS+    +++  + +AG+V 
Sbjct: 50 LSREGPLRLTELARAEGISQPNATQLVTRMERAGLVR 86


>gi|311109242|ref|YP_003982095.1| transcriptional regulator family protein 36 [Achromobacter
          xylosoxidans A8]
 gi|310763931|gb|ADP19380.1| bacterial transcriptional regulator family protein 36
          [Achromobacter xylosoxidans A8]
          Length = 250

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            N+ P  ++ +AEA  I +     I+  L   G +           L RP
Sbjct: 20 QANERPLSLTDLAEAAGIPKSTCHAIVSTLTARGYL---------YTLNRP 61


>gi|307700590|ref|ZP_07637622.1| divergent AAA domain protein [Mobiluncus mulieris FB024-16]
 gi|307614235|gb|EFN93472.1| divergent AAA domain protein [Mobiluncus mulieris FB024-16]
          Length = 495

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           ++L Y A H        ++AE   IS      IL  L+K G+V 
Sbjct: 438 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLIKTGLVT 479


>gi|300716907|ref|YP_003741710.1| GntR-family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062743|emb|CAX59863.1| GntR-family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 242

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          + +A+   +S + + + L  L    ++ TVRGR GG
Sbjct: 43 TDLAKMMGVSHITIREALNTLRANELIHTVRGRNGG 78


>gi|302529379|ref|ZP_07281721.1| predicted protein [Streptomyces sp. AA4]
 gi|302438274|gb|EFL10090.1| predicted protein [Streptomyces sp. AA4]
          Length = 226

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 24/130 (18%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC-RPA-------------DQI 73
            ++     ++   L + +Q L   GIV+   G  GG+ +  R                + 
Sbjct: 36  QELMARFGVAPATLSEAIQLLRARGIVDAKPGPGGGIFVATRSPFTHLSDQLLQLREGKA 95

Query: 74  TI---LDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN-----AFFDVLT 123
           T+   L V+ A + S        +   D   + +C   L +    A       A    + 
Sbjct: 96  TVENCLRVLDALDGSVLHDAVENASDEDIADISACAETLKAAWDSAEAPTAIWALHARIA 155

Query: 124 QYSIECLVRN 133
           Q S   L+R+
Sbjct: 156 QVSPNELLRS 165


>gi|229579076|ref|YP_002837474.1| TrmB family transcriptional regulator [Sulfolobus islandicus
           Y.G.57.14]
 gi|228009790|gb|ACP45552.1| transcriptional regulator, TrmB [Sulfolobus islandicus Y.G.57.14]
          Length = 687

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           A+ ++   + S++A+A  +S+ +   +L+ L + G+VE
Sbjct: 519 ALPDEGGLKTSEVADALKLSKQYALNVLKNLERKGVVE 556


>gi|237729226|ref|ZP_04559707.1| uxu operon transcriptional regulator [Citrobacter sp. 30_2]
 gi|226908955|gb|EEH94873.1| uxu operon transcriptional regulator [Citrobacter sp. 30_2]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      +IAE   ++   + + L  L   G+V+  RG             I +LD 
Sbjct: 28  QPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVDVRRGAG-----------IYVLDN 76

Query: 79  VKA-TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
            +A T +S  V  C  +   +           +L   +  F  +  Q + E +V+ R ++
Sbjct: 77  AEAQTIDSSDVNHCNDAGPFELLQA-----RQLLESNIAEFAAL--QATREDIVKMRQAL 129

Query: 138 K 138
           +
Sbjct: 130 Q 130


>gi|261409952|ref|YP_003246193.1| transcriptional regulator TrmB [Paenibacillus sp. Y412MC10]
 gi|261286415|gb|ACX68386.1| transcriptional regulator, TrmB [Paenibacillus sp. Y412MC10]
          Length = 109

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1  MHLTKRTDYG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M LT           R++         P  + +IAE   I +    K L+ L+ AG+VE
Sbjct: 1  MELTTFNALAEPSRFRIVNLL---QKGPLTVGEIAERLDIRQPQASKHLKVLLDAGLVE 56


>gi|186473644|ref|YP_001860986.1| regulatory protein GntR HTH [Burkholderia phymatum STM815]
 gi|184195976|gb|ACC73940.1| regulatory protein GntR HTH [Burkholderia phymatum STM815]
          Length = 269

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQ--IAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
           +R  +     +D      +  +A+   +    + + L  L   G+VET  GR GG
Sbjct: 48  LRTAIDLGFFSDGELLPKEAVLADELNVGVFSVREALAQLRSEGLVETRAGRGGG 102


>gi|145588925|ref|YP_001155522.1| regulatory protein IclR [Polynucleobacter necessarius subsp.
          asymbioticus QLW-P1DMWA-1]
 gi|145047331|gb|ABP33958.1| transcriptional regulator, IclR family [Polynucleobacter
          necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 277

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L+      +  + +  +AE   +      +IL  +V   +VE  RG  G  RL     + 
Sbjct: 33 LLDALSEQEESSSLKNLAEQTGLHPSTAHRILNDMVACRLVE--RGDGGTYRLGLKLLE- 89

Query: 74 TILDVVKA 81
           + ++VKA
Sbjct: 90 -LGNLVKA 96


>gi|116694086|ref|YP_728297.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528585|emb|CAJ94932.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 254

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +     S+I  +  +S   + + L  L  +G+VET  G  G   L R A+
Sbjct: 44 GNKLPTESEIMASMGVSRTVVREALSRLQASGLVETRHGI-GTFVLARAAE 93


>gi|90410031|ref|ZP_01218048.1| regulator of melibiose operon [Photobacterium profundum 3TCK]
 gi|90329384|gb|EAS45641.1| regulator of melibiose operon [Photobacterium profundum 3TCK]
          Length = 131

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
          VL+Y + +     +   IAE   +S  ++  I   
Sbjct: 28 VLLYISRNFRSNIKTRDIAEHLGLSPNYVTNIFTK 62


>gi|325679211|ref|ZP_08158802.1| sigma-70, region 4 [Ruminococcus albus 8]
 gi|324109140|gb|EGC03365.1| sigma-70, region 4 [Ruminococcus albus 8]
          Length = 340

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 23/43 (53%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            +    +  + P  ++++++A  IS  ++  I++ LV   +++
Sbjct: 128 AMNLLILAYEQPVTLTELSKAIGISTTYIEPIVERLVDGELMK 170


>gi|300741994|ref|ZP_07072015.1| transcriptional regulator, MarR family [Rothia dentocariosa M567]
 gi|300381179|gb|EFJ77741.1| transcriptional regulator, MarR family [Rothia dentocariosa M567]
          Length = 143

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           P+   QIAE   I+   + K L  L   G+V +V
Sbjct: 49 EPSTSPQIAERMGITRQGVQKQLNLLRDEGLVMSV 83


>gi|302557891|ref|ZP_07310233.1| ArsR family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302475509|gb|EFL38602.1| ArsR family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 123

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 50 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 96


>gi|238029056|ref|YP_002913281.1| Transcriptional regulator, ArsR family protein [Burkholderia
          glumae BGR1]
 gi|237880633|gb|ACR32961.1| Transcriptional regulator, ArsR family protein [Burkholderia
          glumae BGR1]
          Length = 110

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
          +   I R L+   +         +IA+   +S   L   L+ L  AG+V +  +GR
Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVSSEQKGR 69


>gi|238028026|ref|YP_002912257.1| IclR regulatory protein [Burkholderia glumae BGR1]
 gi|237877220|gb|ACR29553.1| IclR regulatory protein [Burkholderia glumae BGR1]
          Length = 269

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +R+L   A H+D P  + ++A+   +      +IL  +V   +V+  R   G  RL    
Sbjct: 19 MRLLDALADHSD-PVSLKELAQRTELHPSTAHRILNDMVTCRLVD--RSDPGTYRLGMRL 75

Query: 71 DQITILDVVKA 81
           +  + ++VKA
Sbjct: 76 LE--LGNLVKA 84


>gi|226357806|ref|YP_002787546.1| transcriptional regulator, ROK family [Deinococcus deserti
          VCD115]
 gi|226320049|gb|ACO48042.1| putative transcriptional regulator, ROK family [Deinococcus
          deserti VCD115]
          Length = 401

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          + N       ++     IS+  + K+L  L   G++E  R R G     RP 
Sbjct: 22 LKNTKEVTTDELVRRTGISQPTILKVLSALQHEGLIE--RYRHGEPTGGRPP 71


>gi|289579815|ref|YP_003478281.1| hypothetical protein Nmag_0121 [Natrialba magadii ATCC 43099]
 gi|289529368|gb|ADD03719.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
          Length = 116

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          VL +   + D   +  +I+    I+E  +  +L  L   G+V   +G      L    ++
Sbjct: 25 VLRFLWENRDRAWKAKEISRRTEINENSIHPVLSRLEDRGLVR-HKGAY--WALTDDLER 81

Query: 73 IT-ILDVVKA 81
          +    DV +A
Sbjct: 82 LRQAYDVHRA 91


>gi|188589028|ref|YP_001920947.1| transcriptional regulator, DeoR family [Clostridium botulinum E3
          str. Alaska E43]
 gi|188499309|gb|ACD52445.1| transcriptional regulator, DeoR family [Clostridium botulinum E3
          str. Alaska E43]
          Length = 320

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +++       QI+E   I+   +++ +  L  +G+ + +  G  GG  L
Sbjct: 14 LNSGTKITAKQISERLEINIRSVYRYMDALCVSGVPIISESGHNGGYSL 62


>gi|160941445|ref|ZP_02088781.1| hypothetical protein CLOBOL_06337 [Clostridium bolteae ATCC
          BAA-613]
 gi|158435655|gb|EDP13422.1| hypothetical protein CLOBOL_06337 [Clostridium bolteae ATCC
          BAA-613]
          Length = 295

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          R +   + +       +++IAE   +++  + ++++ L K  +V+ 
Sbjct: 33 RAMTILSILEQKNTASVTEIAEELGVNKSTVSRLMETLKKHDMVQA 78


>gi|134100192|ref|YP_001105853.1| hypothetical protein SACE_3654 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006587|ref|ZP_06564560.1| hypothetical protein SeryN2_18871 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912815|emb|CAM02928.1| hypothetical protein SACE_3654 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 107

 Score = 34.5 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC--- 67
            VL+  A   D    I Q+A    I+E     I+  L+  G +   R GRR    +    
Sbjct: 30  HVLLCLAAEGD--LTIRQLAHRVGITERATQAIISDLIAGGYLTRTRVGRRNSYTVNPNG 87

Query: 68  --RPADQI--TILDVVKAT 82
             R   +    +  ++ A 
Sbjct: 88  PLRHPLEAHHNVGTLIHAL 106


>gi|325265247|ref|ZP_08131972.1| transcriptional regulator, GntR family [Clostridium sp. D5]
 gi|324029426|gb|EGB90716.1| transcriptional regulator, GntR family [Clostridium sp. D5]
          Length = 487

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A    +S   + K L  L + G V+T+ G+ 
Sbjct: 283 KQLARQYDVSISTVRKALSELEQRGFVKTLNGKG 316


>gi|323691475|ref|ZP_08105746.1| anaerobic nitric oxide reductase transcription regulator
           [Clostridium symbiosum WAL-14673]
 gi|323504448|gb|EGB20239.1| anaerobic nitric oxide reductase transcription regulator
           [Clostridium symbiosum WAL-14673]
          Length = 673

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 21  NDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +   + + ++ E    ISE  + +IL  L ++G +   RGR GG+ L   
Sbjct: 608 SGRTSLLLELKERGISISENRMERILSKLQESGYIVRNRGR-GGICLTEA 656


>gi|323483079|ref|ZP_08088472.1| anaerobic nitric oxide reductase transcription regulator
           [Clostridium symbiosum WAL-14163]
 gi|323403619|gb|EGA95924.1| anaerobic nitric oxide reductase transcription regulator
           [Clostridium symbiosum WAL-14163]
          Length = 673

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 21  NDYPNRISQIAEA-CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +   + + ++ E    ISE  + +IL  L ++G +   RGR GG+ L   
Sbjct: 608 SGRTSLLLELKERGISISENRMERILSKLQESGYIVRNRGR-GGICLTEA 656


>gi|311898707|dbj|BAJ31115.1| putative GntR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 132

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +R  +      D   ++ ++A    I+   + K  + L   G+V    G  
Sbjct: 22 VRQALR--LGLLSEGDRLPKVKEVAAKVAINPNTVLKAYRQLENEGLVSPRPGVG 74


>gi|262280740|ref|ZP_06058523.1| IclR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257640|gb|EEY76375.1| IclR family transcriptional regulator [Acinetobacter calcoaceticus
           RUH2202]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           M ++      I  ++     +     +  I E   +S+   ++ L+ LV   +++ + G 
Sbjct: 1   MAISSFGK--ILTVLDLFSVSRPIINVDIICEELGLSKPTSYRYLKELVSTDLLKRINGT 58

Query: 61  RGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
            G   L     +I +LD + + T+    ++  F  + ++      C L + L  
Sbjct: 59  SGDYTLG---SKIAVLDYISRTTDPLVQISTPFMRNIVE--RTELCCLLTYLND 107


>gi|326200862|ref|ZP_08190734.1| transcriptional regulator, GntR family [Clostridium papyrosolvens
          DSM 2782]
 gi|325988430|gb|EGD49254.1| transcriptional regulator, GntR family [Clostridium papyrosolvens
          DSM 2782]
          Length = 126

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +D    + ++A+   I+   + K  + L   GI+ +V+G+ 
Sbjct: 32 DDKIPSVRELAQTLTINPNTIQKAYKDLEAEGIIYSVKGKG 72


>gi|297560592|ref|YP_003679566.1| GntR family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845040|gb|ADH67060.1| GntR domain protein [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
          Length = 267

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          A          ++AE   +S + L + L+ L   G++   +G+
Sbjct: 44 ARPGSQLPSEKELAERFGVSRVVLREALRTLEAKGLIHRRQGK 86


>gi|229819465|ref|YP_002880991.1| MarR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565378|gb|ACQ79229.1| transcriptional regulator, MarR family [Beutenbergia cavernae DSM
           12333]
          Length = 203

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 1   MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           M L   TD  +R L +   A +         +AE   IS     K+L  L  AG VE  R
Sbjct: 65  MKLG-ETD--MRALRFLVAAKNQGIAVTPGMLAEHLNISSAATTKLLDRLSAAGHVE--R 119

Query: 59  GRR 61
           G  
Sbjct: 120 GPH 122


>gi|187777961|ref|ZP_02994434.1| hypothetical protein CLOSPO_01553 [Clostridium sporogenes ATCC
          15579]
 gi|187774889|gb|EDU38691.1| hypothetical protein CLOSPO_01553 [Clostridium sporogenes ATCC
          15579]
          Length = 497

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++            I  +A+   IS + + K    L + G+V T++G+ 
Sbjct: 24 RIMSGFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKG 73


>gi|220911744|ref|YP_002487053.1| MarR family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858622|gb|ACL38964.1| transcriptional regulator, MarR family [Arthrobacter
          chlorophenolicus A6]
          Length = 165

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +   R + +AE   +S   L + +  L  AG+V
Sbjct: 47 GEGETRAAHLAERLGVSPPVLSRHIAELADAGLV 80


>gi|162451938|ref|YP_001614305.1| DeoR family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
 gi|161162520|emb|CAN93825.1| putative transcriptional regulator (DeoR family) [Sorangium
          cellulosum 'So ce 56']
          Length = 336

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR 68
                     +A    +S   +++ L  L  AG+ V   RG  GG+ L  
Sbjct: 15 RAKSRQLTAEDLARRLEVSARTIYRDLDALSSAGVPVYAQRGPSGGISLAE 65


>gi|160940020|ref|ZP_02087365.1| hypothetical protein CLOBOL_04909 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436600|gb|EDP14367.1| hypothetical protein CLOBOL_04909 [Clostridium bolteae ATCC
          BAA-613]
          Length = 309

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETV----RGRRGG 63
          S+IA+   IS   + K+L+     GIV       +G  GG
Sbjct: 23 SEIADRYGISRPMVSKLLKEARDRGIVTIRINAPKGESGG 62


>gi|113869335|ref|YP_727824.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113528111|emb|CAJ94456.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 258

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 17/86 (19%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ-------- 72
            D   + + + E   ++   + + L  L   G+V+   G  GG  L +P  +        
Sbjct: 37  GDKLPQEAALIEQMGVARGTVREALASLQAQGLVKVSTGPNGGATLTQPPYERCLEAVSN 96

Query: 73  ---------ITILDVVKATEESFFVA 89
                    +T+  + +A E      
Sbjct: 97  FLYFQSVDIVTLYALRRAVEPELAAN 122


>gi|14521903|ref|NP_127380.1| ArsR family transcriptional regulator [Pyrococcus abyssi GE5]
 gi|5459123|emb|CAB50609.1| Transcriptional regulatory protein, arsR family [Pyrococcus
          abyssi GE5]
          Length = 184

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          L+ RT      +    +  D+P  +S++AE     +  +++ ++ L KAG+VE V
Sbjct: 17 LSDRTR-----MKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVEVV 66


>gi|13477068|ref|NP_108639.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027832|dbj|BAB54425.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 388

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 23/83 (27%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETV----RGRR-----------GGVR-- 65
            P    +IA    ++   +  I++ L + G + +V    RGR            GG    
Sbjct: 27  GPIARGEIASRVGLTVQTVSTIVRELEEQGYILSVREEPRGRGLPPATLRINPEGGYAVG 86

Query: 66  -----LCRPADQITI-LDVVKAT 82
                L   A  I +  DV+++T
Sbjct: 87  IHITPLGINAALINLSGDVIEST 109


>gi|319793324|ref|YP_004154964.1| DeoR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595787|gb|ADU36853.1| transcriptional regulator, DeoR family [Variovorax paradoxus EPS]
          Length = 259

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +L+   +  +   R+S +A    +SE+ L + LQ +  AG+++ V G  G + L R  +
Sbjct: 10 HMLILKVLAQEGACRVSDMARRFTLSEMTLRRDLQEMHDAGLLKRVHG--GALPLGRDTE 67


>gi|303238182|ref|ZP_07324718.1| Helix-turn-helix type 11 domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302594228|gb|EFL63940.1| Helix-turn-helix type 11 domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 317

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVRL 66
          MY  +  +   +IS+IA    + E  + +    L  A  +++  RG+ GG +L
Sbjct: 10 MYILLQANGKMKISEIASLLEVDERSVRRYRDDLEVASILIDGERGKYGGYQL 62


>gi|302521498|ref|ZP_07273840.1| ArsR family transcriptional regulator [Streptomyces sp. SPB78]
 gi|302430393|gb|EFL02209.1| ArsR family transcriptional regulator [Streptomyces sp. SPB78]
          Length = 146

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++++ R
Sbjct: 40 LRLLSMIASRAGGEVCVCDLIPAFDLSQPTISHHLKLLKQAGLIDSER 87


>gi|256111584|ref|ZP_05452579.1| transcriptional regulator, GntR family protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|265993061|ref|ZP_06105618.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262763931|gb|EEZ09963.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 45 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95


>gi|225686308|ref|YP_002734280.1| GntR family transcriptional regulator [Brucella melitensis ATCC
          23457]
 gi|256043406|ref|ZP_05446339.1| transcriptional regulator, GntR family protein [Brucella
          melitensis bv. 1 str. Rev.1]
 gi|256262555|ref|ZP_05465087.1| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|260564613|ref|ZP_05835098.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989830|ref|ZP_06102387.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|225642413|gb|ACO02326.1| transcriptional regulator, GntR family protein [Brucella
          melitensis ATCC 23457]
 gi|260152256|gb|EEW87349.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000499|gb|EEZ13189.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092337|gb|EEZ16590.1| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|326410673|gb|ADZ67737.1| GntR family transcriptional regulator [Brucella melitensis M28]
          Length = 257

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 45 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95


>gi|206577843|ref|YP_002239874.1| hypothetical protein KPK_4070 [Klebsiella pneumoniae 342]
 gi|206566901|gb|ACI08677.1| hypothetical protein KPK_4070 [Klebsiella pneumoniae 342]
          Length = 255

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
             + +  + I +   +S  +++++L  L + G +   +G+
Sbjct: 204 GQHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243


>gi|116694934|ref|YP_729145.1| GntR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529433|emb|CAJ95780.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16]
          Length = 275

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 20/36 (55%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  +A+A  ++++ + +    L + G++ + RGR 
Sbjct: 51 TVEHLAQAYGLAKVTVRQAFALLTEEGLISSQRGRG 86


>gi|86361296|ref|YP_473183.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86285398|gb|ABC94456.1| probable transcriptional regulator protein [Rhizobium etli CFN
          42]
          Length = 412

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R ++   IH   P   ++IA    +++  + +I+  L+  G++   R R G
Sbjct: 26 RAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVDRLLDEGLIMEARRRHG 76


>gi|84494432|ref|ZP_00993551.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84383925|gb|EAP99805.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
          Length = 122

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 14 LMYCAIHNDYPNRISQIAEA-CCISELFLFKILQPLVKAGIV 54
          L+  A+ +  P R S++      +SE  L + L+ LV  G V
Sbjct: 30 LVLLALGDGEPLRWSELRRRAEGVSEKMLAQTLRTLVADGFV 71


>gi|119773338|ref|YP_926078.1| biotin--protein ligase [Shewanella amazonensis SB2B]
 gi|119765838|gb|ABL98408.1| Biotin--(acetyl-CoA-carboxylase) ligase [Shewanella amazonensis
          SB2B]
          Length = 317

 Score = 34.5 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
               +AE   IS   + K +  L   G+ + +V+GR  G +L  P   I
Sbjct: 20 VSGEALAERLGISRAAISKHIDVLETLGLSIYSVKGR--GYKLATPVSLI 67


>gi|323528547|ref|YP_004230699.1| regulatory protein MarR [Burkholderia sp. CCGE1001]
 gi|323385549|gb|ADX57639.1| regulatory protein MarR [Burkholderia sp. CCGE1001]
          Length = 140

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          +    P  + Q+AE   +    L +I+QPL + G+V +
Sbjct: 44 LQRTGPMTMKQLAETMRMQRTTLVRIVQPLRRNGLVLS 81


>gi|282883085|ref|ZP_06291685.1| biotin-(acetyl-CoA-carboxylase) ligase [Peptoniphilus lacrimalis
          315-B]
 gi|281297062|gb|EFA89558.1| biotin-(acetyl-CoA-carboxylase) ligase [Peptoniphilus lacrimalis
          315-B]
          Length = 327

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCRP 69
          VL     +        ++A+   IS   ++K +  L   G +   +T RG     +L   
Sbjct: 7  VLQELEKNRGIYISGQELADRLKISRTAIWKAINALKSDGFIIDSQTKRG----YKLDDA 62

Query: 70 ADQITI 75
          +D I++
Sbjct: 63 SDMISV 68


>gi|262196919|ref|YP_003268128.1| MarR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262080266|gb|ACY16235.1| transcriptional regulator, MarR family [Haliangium ochraceum DSM
           14365]
          Length = 366

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 7   TDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
               +R     VL+        P   S +AEA       + +IL+ L  AG+V++
Sbjct: 85  GRLALRQEWREVLVLL---RGGPRLPSDLAEALHKDRPTVTRILKKLRAAGLVQS 136


>gi|261884250|ref|ZP_06008289.1| transcriptional regulator, TrmB [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 110

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + P    +IAE   I +    K+L+ L +AG VE
Sbjct: 24 KEGPLSAGEIAERSAIGQPQASKLLRVLSEAGFVE 58


>gi|238061146|ref|ZP_04605855.1| TraR protein [Micromonospora sp. ATCC 39149]
 gi|237882957|gb|EEP71785.1| TraR protein [Micromonospora sp. ATCC 39149]
          Length = 273

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 2  HLTKRTDY---GIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +  +  Y    +R+    A       D     +Q++    +S     K LQ LV  G+V
Sbjct: 19 RVDTKPRYEQVALRLRGRIASGELSPGDRMPSENQLSTEMDVSRDVARKALQLLVNEGLV 78

Query: 55 ETVRGRRGGVR 65
          E++ GR+ G R
Sbjct: 79 ESL-GRQQGYR 88


>gi|268590980|ref|ZP_06125201.1| transcriptional regulator, GntR family [Providencia rettgeri DSM
           1131]
 gi|291313781|gb|EFE54234.1| transcriptional regulator, GntR family [Providencia rettgeri DSM
           1131]
          Length = 256

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPA--- 70
           I  D   +  ++ E    S+  + + L+ L   G+++T  G  GG  +      R     
Sbjct: 34  IPGDRLPQEKELIEHYNASKSTVREALKSLEVQGLIKTKTGPGGGAFIDSMTEARAMSLL 93

Query: 71  ------DQITILDVV 79
                   I+I D+ 
Sbjct: 94  SNYLFTRDISIKDIY 108


>gi|206901838|ref|YP_002251431.1| hypothetical protein DICTH_1618 [Dictyoglomus thermophilum
          H-6-12]
 gi|206740941|gb|ACI19999.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 194

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M LT+R    +  L      N  P   ++IA+   +S    + I+Q L K G ++ +
Sbjct: 1  MSLTERRRQFLETLKTLYEKNKRPIHYAEIAKELSVSPATAYDIMQILYKEGYIDAI 57


>gi|220911710|ref|YP_002487019.1| ArsR family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858588|gb|ACL38930.1| transcriptional regulator, ArsR family [Arthrobacter
          chlorophenolicus A6]
          Length = 118

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 4  TKRTDYGIRVLMY------CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +   D     L         A  +  P  ++++AE   IS+  + K +Q L +A +V   
Sbjct: 5  STALDSAFLALADPVRRSIIARLSRGPATVNELAEPFEISKQAVSKHIQVLEQAQLVTRT 64

Query: 58 R 58
          R
Sbjct: 65 R 65


>gi|169237631|ref|YP_001690834.1| hypothetical protein OE6046F [Halobacterium salinarum R1]
 gi|167728408|emb|CAP15220.1| hypothetical protein OE6046F [Halobacterium salinarum R1]
          Length = 307

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          D  + IS++A     SE +L + +  LV+ G+V T R
Sbjct: 14 DRGDTISELATKLNHSESYLSRAVADLVEKGLVYTER 50


>gi|28870419|ref|NP_793038.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969884|ref|ZP_03398018.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386255|ref|ZP_07234673.1| transcriptional regulator, GntR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|28853666|gb|AAO56733.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925432|gb|EEB58993.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           tomato T1]
 gi|331019285|gb|EGH99341.1| transcriptional regulator, GntR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 244

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          ++ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIASVADVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|83949466|ref|ZP_00958199.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
 gi|83837365|gb|EAP76661.1| transcriptional regulator, GntR family protein [Roseovarius
          nubinhibens ISM]
          Length = 242

 Score = 34.5 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++++   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELSDQFQVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|325264229|ref|ZP_08130961.1| two-component response regulator [Clostridium sp. D5]
 gi|324030713|gb|EGB91996.1| two-component response regulator [Clostridium sp. D5]
          Length = 496

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            L Y A H      + ++A++  I+  +L ++ + 
Sbjct: 397 ALTYIAEHYAEIISLKEVADSIHINTDYLTRLFKK 431


>gi|322370320|ref|ZP_08044879.1| biotin--[acetyl-CoA-carboxylase] ligase [Haladaptatus
          paucihalophilus DX253]
 gi|320550028|gb|EFW91683.1| biotin--[acetyl-CoA-carboxylase] ligase [Haladaptatus
          paucihalophilus DX253]
          Length = 342

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 12 RVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          R ++   A   D P    ++A++  IS   ++K ++ L  AG  +E+      G  L
Sbjct: 6  RAVLDALA---DGPVSGPELADSLDISRNAIWKHVEALRTAGFEIEST---SDGYLL 56


>gi|302545135|ref|ZP_07297477.1| putative IclR-family transcriptional regulator [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302462753|gb|EFL25846.1| putative IclR-family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 253

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR-G 62
          +   + +R+L   A H+      S IA    +    L ++L+ L + G VE +  G   G
Sbjct: 12 RSVRHALRILEVVARHSSG-VSHSGIARETRLPSDRLVELLRMLRREGYVEQIADGAYIG 70

Query: 63 GVRLC 67
          G  L 
Sbjct: 71 GASLT 75


>gi|255655191|ref|ZP_05400600.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-23m63]
 gi|296451176|ref|ZP_06892917.1| sigma-54 dependent transcriptional regulator [Clostridium difficile
           NAP08]
 gi|296880472|ref|ZP_06904434.1| sigma-54 dependent transcriptional regulator [Clostridium difficile
           NAP07]
 gi|296259997|gb|EFH06851.1| sigma-54 dependent transcriptional regulator [Clostridium difficile
           NAP08]
 gi|296428426|gb|EFH14311.1| sigma-54 dependent transcriptional regulator [Clostridium difficile
           NAP07]
          Length = 666

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I E   ISE  + K+L  L + G + +  GR G
Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651


>gi|255102770|ref|ZP_05331747.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-63q42]
          Length = 325

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          +        ++++   +S   ++K ++ L + G  +E+V  +  G RL      
Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63


>gi|229917309|ref|YP_002885955.1| MarR family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229468738|gb|ACQ70510.1| transcriptional regulator, MarR family [Exiguobacterium sp. AT1b]
          Length = 147

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           P    Q+A+   + +  +   L+ LV  G+V + RG
Sbjct: 50 GPTPAGQLAQKQGVHKSAVSNRLKKLVDKGLVTSRRG 86


>gi|170749357|ref|YP_001755617.1| Crp/FNR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655879|gb|ACB24934.1| transcriptional regulator, Crp/Fnr family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 250

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D P    ++A+A  I+ + + + ++ L  AG++  +RGRR
Sbjct: 184 DLPMTQPELADALGITSVHVNRTVRDLRAAGLI-ALRGRR 222


>gi|163787230|ref|ZP_02181677.1| transcriptional regulator, AsnC family protein [Flavobacteriales
          bacterium ALC-1]
 gi|159877118|gb|EDP71175.1| transcriptional regulator, AsnC family protein [Flavobacteriales
          bacterium ALC-1]
          Length = 156

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 1  MHLTKRTDYG-------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          M +  +  Y        +R LM      D    I +IA    IS   + + L+ L K+G+
Sbjct: 1  MKINDKGVYIDGIDKKILRALM-----EDARTPILEIARNVGISGAAIHQRLKKLEKSGL 55

Query: 54 VETVR 58
          +   +
Sbjct: 56 LAGSK 60


>gi|17989102|ref|NP_541735.1| GntR family transcriptional regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|17984949|gb|AAL53999.1| transcriptional regulator, gntr family [Brucella melitensis bv. 1
          str. 16M]
 gi|326553965|gb|ADZ88604.1| GntR family transcriptional regulator [Brucella melitensis M5-90]
          Length = 259

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 47 GEALPPERDIAEYTNISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 97


>gi|150015677|ref|YP_001307931.1| GntR family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149902142|gb|ABR32975.1| regulatory protein GntR, HTH [Clostridium beijerinckii NCIMB
          8052]
          Length = 122

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++       +    +  +A    ++   + K L  L + G+V + R
Sbjct: 21 LRIVSGIYKAGEKLPSVRDMAGDAAVNPNTMQKALTELERTGLVFSQR 68


>gi|22538032|ref|NP_688883.1| cyclic nucleotide-binding domain-containing protein [Streptococcus
           agalactiae 2603V/R]
 gi|25011921|ref|NP_736316.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           NEM316]
 gi|76797871|ref|ZP_00780134.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           18RS21]
 gi|77414216|ref|ZP_00790379.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           515]
 gi|22534935|gb|AAN00756.1|AE014277_4 cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           2603V/R]
 gi|24413463|emb|CAD47541.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586774|gb|EAO63269.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           18RS21]
 gi|77159742|gb|EAO70890.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           515]
          Length = 214

 Score = 34.2 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 17  CAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            AI         +S +A++  +S   L +++  +VK G+++
Sbjct: 153 LAIEEQGYFQLELSSLADSFGVSYRHLLRVIHDMVKEGLIQ 193


>gi|329936863|ref|ZP_08286542.1| MarR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329303788|gb|EGG47672.1| MarR family transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 149

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          VL+  A     P   +++AE   +S      +L  L KAG VE VR
Sbjct: 34 VLIIEAEQRGRPLTPARLAERVGLSPGATSILLGRLEKAGHVERVR 79


>gi|329925752|ref|ZP_08280538.1| ROK family protein [Paenibacillus sp. HGF5]
 gi|328939632|gb|EGG35977.1| ROK family protein [Paenibacillus sp. HGF5]
          Length = 386

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-----ETVRGRRGGVRLCRPADQI 73
          I N+ P   + IA+   +S   + +I+  L + G V     +   GR       R +  I
Sbjct: 21 IKNEQPISRAVIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG------RKSSLI 74

Query: 74 TILD 77
           +LD
Sbjct: 75 RLLD 78


>gi|328882267|emb|CCA55506.1| hypothetical protein SVEN_2220 [Streptomyces venezuelae ATCC
          10712]
          Length = 129

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLC--- 67
          RVL   A + +   RI  IA  C ++E  + +I+  L + G +  T  GR    R+    
Sbjct: 19 RVLASIADNPNA--RIRDIAARCRLTERAVSRIIADLEQDGYLSHTREGRTNTYRIAPGK 76

Query: 68 --RPADQ 72
            R   +
Sbjct: 77 ALRHPAE 83


>gi|325524690|gb|EGD02682.1| IclR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 129

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 11 IRVLMYC-AIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVR 65
          +R L    A+ +   P+ +SQ+A    I +  L ++++ L   G V      RG   G+ 
Sbjct: 9  LRALAVLEALASAGQPSTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIA 68

Query: 66 LCRPADQITIL 76
          L   A Q+ + 
Sbjct: 69 LGPRAAQLALA 79


>gi|323485477|ref|ZP_08090823.1| hypothetical protein HMPREF9474_02574 [Clostridium symbiosum
           WAL-14163]
 gi|323694468|ref|ZP_08108638.1| GntR family transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401125|gb|EGA93477.1| hypothetical protein HMPREF9474_02574 [Clostridium symbiosum
           WAL-14163]
 gi|323501456|gb|EGB17348.1| GntR family transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 493

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A    +S   + K L  L + G V+T+ G+ 
Sbjct: 283 KQLARQYDVSISTVRKALSELEQRGFVKTLNGKG 316


>gi|302541673|ref|ZP_07294015.1| putative transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302459291|gb|EFL22384.1| putative transcriptional regulator [Streptomyces himastatinicus
          ATCC 53653]
          Length = 333

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 3  LTKRTDYG-----IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          +T+ T        +R++   A ++++   R  +IAE   IS+  + ++L    K GIV T
Sbjct: 1  MTRTTRMATSDEQLRLMTRIARLYHEQGMRQPRIAEELHISQARVSRLLTQAAKLGIVRT 60

Query: 57 V 57
          +
Sbjct: 61 I 61


>gi|302062629|ref|ZP_07254170.1| transcriptional regulator, GntR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134005|ref|ZP_07259995.1| transcriptional regulator, GntR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 242

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          ++ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIASVADVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|282909628|ref|ZP_06317437.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282326202|gb|EFB56506.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
          Length = 138

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          L+  AI  +      ++A+ C +S+  + + +  L   G+ +    G+ GG ++ +   +
Sbjct: 9  LIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGYQIQQAQSK 68

Query: 73 ITI 75
          I +
Sbjct: 69 IAL 71


>gi|302553187|ref|ZP_07305529.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470805|gb|EFL33898.1| transcriptional regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 370

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+  Y A         S++A+   ++   + + L  L KAG+V T R  RG   L
Sbjct: 299 MRMCRYLARSA---YTTSELAQTHGMTAPEISRHLAVLKKAGLVTTRR--RGRYVL 349


>gi|253579160|ref|ZP_04856430.1| DNA-binding transcriptional regulator [Ruminococcus sp.
          5_1_39B_FAA]
 gi|251849258|gb|EES77218.1| DNA-binding transcriptional regulator [Ruminococcus sp.
          5_1_39BFAA]
          Length = 251

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D     +++++   +S++ + K +Q L   G V  V+G+ 
Sbjct: 27 MPGDKLPTENELSDQYNVSKITIRKAIQNLSDEGYVNKVQGKG 69


>gi|257055891|ref|YP_003133723.1| transcriptional regulator [Saccharomonospora viridis DSM 43017]
 gi|256585763|gb|ACU96896.1| transcriptional regulator [Saccharomonospora viridis DSM 43017]
          Length = 261

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++  D  + +L   A     P  ++ +A    + +    ++L  L K   VE   G RG 
Sbjct: 17 SQSVDRALSILTLLAQRG--PLGVTDLARHLGVHKSTATRLLATLEKFRFVE-QDGNRGK 73

Query: 64 VRLC 67
           RL 
Sbjct: 74 FRLG 77


>gi|256396287|ref|YP_003117851.1| hypothetical protein Caci_7181 [Catenulispora acidiphila DSM
          44928]
 gi|256362513|gb|ACU76010.1| hypothetical protein Caci_7181 [Catenulispora acidiphila DSM
          44928]
          Length = 148

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
           VL+  A +     R+  I+    I+E     I+  L +AG VE +R GRR    L
Sbjct: 18 HVLVEIARNPQA--RVRDISAIIGITERATQAIIADLERAGYVERLRIGRRTRYVL 71


>gi|227876839|ref|ZP_03994948.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817782|ref|ZP_07451523.1| probable DNA-binding protein [Mobiluncus mulieris ATCC 35239]
 gi|227842736|gb|EEJ52936.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649431|gb|EFM46715.1| probable DNA-binding protein [Mobiluncus mulieris ATCC 35239]
          Length = 499

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           ++L Y A H        ++AE   IS      IL  L+K G+V 
Sbjct: 442 KILDYLATHP--TASSRELAETAGISIGGTRAILNNLIKTGLVT 483


>gi|255657508|ref|ZP_05402917.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-23m63]
 gi|296452820|ref|ZP_06894507.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium
          difficile NAP08]
 gi|296879928|ref|ZP_06903900.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium
          difficile NAP07]
 gi|296258368|gb|EFH05276.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium
          difficile NAP08]
 gi|296429042|gb|EFH14917.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Clostridium
          difficile NAP07]
          Length = 325

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          +        ++++   +S   ++K ++ L + G  +E+V  +  G RL      
Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63


>gi|254974721|ref|ZP_05271193.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-66c26]
 gi|255092110|ref|ZP_05321588.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile CIP 107932]
 gi|255313847|ref|ZP_05355430.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-76w55]
 gi|255516528|ref|ZP_05384204.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-97b34]
 gi|255649629|ref|ZP_05396531.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-37x79]
 gi|260682792|ref|YP_003214077.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile CD196]
 gi|260686390|ref|YP_003217523.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile R20291]
 gi|260208955|emb|CBA61986.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile CD196]
 gi|260212406|emb|CBE03257.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile R20291]
          Length = 666

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I E   ISE  + K+L  L + G + +  GR G
Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651


>gi|224369786|ref|YP_002603950.1| BirA [Desulfobacterium autotrophicum HRM2]
 gi|223692503|gb|ACN15786.1| BirA [Desulfobacterium autotrophicum HRM2]
          Length = 304

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQI 73
          M+ A  ND      +++ A  IS + ++K ++ LV  G  +E+      G  L       
Sbjct: 1  MHLAWANDKFVSGVEMSNALDISRVAVWKHIKTLVNEGYDIESSPR---GYGLA------ 51

Query: 74 TILDVVK 80
          T  D+V+
Sbjct: 52 TCRDLVR 58


>gi|254381385|ref|ZP_04996750.1| metal-dependent regulatory protein [Streptomyces sp. Mg1]
 gi|194340295|gb|EDX21261.1| metal-dependent regulatory protein [Streptomyces sp. Mg1]
          Length = 113

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL       D P  + ++  +  +    L + L  L ++GIV + R
Sbjct: 22 IRVLELL---QDGPLPVRELLASIEVEPSALSQQLAVLRRSGIVTSSR 66


>gi|261405070|ref|YP_003241311.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261281533|gb|ACX63504.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 315

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          +   ++      + ++A+   +S   + + LQ L + G+ + +  G  GG ++ + 
Sbjct: 10 LMMTVNRMRKFTVRELADQFGVSSRTILRDLQELSELGVPLYSEVGPHGGYQVLKE 65


>gi|153011078|ref|YP_001372292.1| GntR domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151562966|gb|ABS16463.1| GntR domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 235

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +A++  +S   + + +  L   G+VET +G  
Sbjct: 40 LAQSFGVSRSVVREAIAQLRNEGLVETRQGVG 71


>gi|254241306|ref|ZP_04934628.1| hypothetical protein PA2G_02001 [Pseudomonas aeruginosa 2192]
 gi|126194684|gb|EAZ58747.1| hypothetical protein PA2G_02001 [Pseudomonas aeruginosa 2192]
          Length = 271

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVR 65
           IR+L + +  N  P R   IA    I+    F IL+ LV   +V+    + R    G+ 
Sbjct: 34 AIRILRHLS-QNGAPERSVDIARRLSINPSTCFNILRTLVMEDVVDFNPMSKR-YSAGLG 91

Query: 66 LCR 68
          L R
Sbjct: 92 LAR 94


>gi|160899103|ref|YP_001564685.1| transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364687|gb|ABX36300.1| transcriptional regulator, GntR family with aminotransferase domain
           [Delftia acidovorans SPH-1]
          Length = 509

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           G+R              +  +A+   +S   + +    L   G+V + RG  G     R 
Sbjct: 63  GLRA-------GSRLPSVRALAQQAGVSRDTVVQAYDRLAAQGLVHSRRG-SGVFVSARR 114

Query: 70  ADQ 72
           A Q
Sbjct: 115 AAQ 117


>gi|119720393|ref|YP_920888.1| biotin--acetyl-CoA-carboxylase ligase [Thermofilum pendens Hrk 5]
 gi|119525513|gb|ABL78885.1| biotin--acetyl-CoA-carboxylase ligase [Thermofilum pendens Hrk 5]
          Length = 322

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL   A    Y  R  ++AE   +S++ + + +  L K G  VE+   R  G RL
Sbjct: 9  RVLEVLARRGGY-VRGGELAEKLGVSKVAIHRAIVGLRKMGYVVESHPRR--GYRL 61


>gi|21219344|ref|NP_625123.1| GntR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|256789616|ref|ZP_05528047.1| GntR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|289773505|ref|ZP_06532883.1| GntR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|5459227|emb|CAB48900.1| putative gntR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
 gi|289703704|gb|EFD71133.1| GntR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 146

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + ++T+  +R+ +      D      ++  A  I+   +F+  + + +AG+V + RG  
Sbjct: 21 QIVRQTEQALRMGVL--RVGDKLPTAKEVVAATAINPNTVFRAYRDMEQAGLVRSRRG-L 77

Query: 62 GGV---RLCRPADQ 72
          G      L RP  +
Sbjct: 78 GTFVTRSLARPGAE 91


>gi|148257826|ref|YP_001242411.1| hypothetical protein BBta_6602 [Bradyrhizobium sp. BTAi1]
 gi|146409999|gb|ABQ38505.1| hypothetical protein BBta_6602 [Bradyrhizobium sp. BTAi1]
          Length = 202

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            +H      +S+IA     S   + K +  LV+AG +E   G  G
Sbjct: 7  LDLHAGLWLSVSEIARQHGKSRQAIAKRVDSLVEAGKLEARPGPNG 52


>gi|319763250|ref|YP_004127187.1| gntr domain protein [Alicycliphilus denitrificans BC]
 gi|317117811|gb|ADV00300.1| GntR domain protein [Alicycliphilus denitrificans BC]
          Length = 276

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---------RGGVRL- 66
                D     S++     +S   + + L  L  AG+VET  G            G+ L 
Sbjct: 63  LLREGDKLPTESELVRDYDVSRTVVREALSKLQAAGLVETRHGIGTFVLPARDGAGLTLD 122

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
            R   + ++ DV+   E    +    A                 LR AL AF   
Sbjct: 123 ARELSE-SV-DVLAVLELRISLETEAAGLAAQRRSSEH---LQALRDALQAFERH 172


>gi|311281332|ref|YP_003943563.1| transcriptional regulator, GntR family [Enterobacter cloacae
          SCF1]
 gi|308750527|gb|ADO50279.1| transcriptional regulator, GntR family [Enterobacter cloacae
          SCF1]
          Length = 228

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +AE   +S   + K +  L +   V T +G  
Sbjct: 31 LAERYGVSRPTIQKAVARLKRESFVHTRQGSG 62


>gi|300825618|ref|ZP_07105664.1| ROK family protein [Escherichia coli MS 119-7]
 gi|300521947|gb|EFK43016.1| ROK family protein [Escherichia coli MS 119-7]
          Length = 244

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRRG-------------G 63
            P    QIAE   ++   + KI + L++ G+++      +  GRR              G
Sbjct: 31  GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           VRL R    IT+ D+              A      P      L   L   LNA    + 
Sbjct: 91  VRLGRHDATITLFDLSSKV---------LAEEHYPLPERTQQTLEHAL---LNAIAQFID 138

Query: 124 QY--SIECLVR 132
            Y   +  L+ 
Sbjct: 139 SYQRKLRELIA 149


>gi|228477355|ref|ZP_04061991.1| histidine kinase [Streptococcus salivarius SK126]
 gi|228250790|gb|EEK09978.1| histidine kinase [Streptococcus salivarius SK126]
          Length = 344

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRRG-GVRLCRPAD 71
            A   +    IS   E   I   +L KI + L +   VET R    G  G G+ + R   
Sbjct: 262 LAQLTEQELTISVKDEGQGILPEYLEKIFKRLYR---VETSRNMKTGGHGLGLAIARELA 318

Query: 72  -----QITI 75
                +IT+
Sbjct: 319 YQLGGEITV 327


>gi|166030710|ref|ZP_02233539.1| hypothetical protein DORFOR_00384 [Dorea formicigenerans ATCC
          27755]
 gi|166029502|gb|EDR48259.1| hypothetical protein DORFOR_00384 [Dorea formicigenerans ATCC
          27755]
          Length = 326

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          ++     +D      Q+ +   +S   ++K ++ L K G  +E VR R  G RL    D 
Sbjct: 5  ILRLLKESDDYISGQQMCDRFHVSRTAVWKAIEQLKKEGYEIEAVRNR--GYRLLESPDI 62

Query: 73 ITILDV 78
          ++  ++
Sbjct: 63 MSEAEI 68


>gi|149187957|ref|ZP_01866253.1| transcriptional regulator, AraC family protein [Vibrio shilonii
           AK1]
 gi|148838353|gb|EDL55294.1| transcriptional regulator, AraC family protein [Vibrio shilonii
           AK1]
          Length = 316

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            L Y   H   P  ++ IAE   +S  ++ ++ + 
Sbjct: 190 CLTYIDSHYMEPLTLTDIAERSGLSYHYVSRMFKR 224


>gi|89070275|ref|ZP_01157594.1| transcriptional regulator, Fnr-type [Oceanicola granulosus
           HTCC2516]
 gi|89044114|gb|EAR50275.1| transcriptional regulator, Fnr-type [Oceanicola granulosus
           HTCC2516]
          Length = 259

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           P   S +AE C +S + + ++L+ L +AG+     GR
Sbjct: 182 PLTQSDLAEVCGLSPIHVNRVLRDLREAGLCTFADGR 218


>gi|117928444|ref|YP_872995.1| condensin subunit ScpB [Acidothermus cellulolyticus 11B]
 gi|117648907|gb|ABK53009.1| condensin subunit ScpB [Acidothermus cellulolyticus 11B]
          Length = 205

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGGV 64
           +  +++ A   D P  ++ +A    + E  + + +  L  A + +  RG       GG 
Sbjct: 27 AVEAMLFVA---DEPVTVTAMAAVLGVPEPQVAEAVARLA-ASLADAGRGIELRQVAGGW 82

Query: 65 RL-CRPA 70
          RL  RPA
Sbjct: 83 RLYTRPA 89


>gi|86145013|ref|ZP_01063345.1| Transcriptional regulator [Vibrio sp. MED222]
 gi|85837912|gb|EAQ56024.1| Transcriptional regulator [Vibrio sp. MED222]
          Length = 476

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +D    I Q++E   +S+  + +  Q L   G V +V   + G R
Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71


>gi|99081288|ref|YP_613442.1| GntR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037568|gb|ABF64180.1| transcriptional regulator, GntR family [Ruegeria sp. TM1040]
          Length = 243

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++AE   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELAEQFQVSRATVREGLKRLAAQSLIRTQRGASGG 73


>gi|332652481|ref|ZP_08418226.1| putative regulatory protein PocR [Ruminococcaceae bacterium D16]
 gi|332517627|gb|EGJ47230.1| putative regulatory protein PocR [Ruminococcaceae bacterium D16]
          Length = 288

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58
            ++Y   H      + QIA    +S  +L K+ Q    L  +  +  +R
Sbjct: 183 AILYINQHCSEKLVVEQIAGHAGVSPRYLTKLFQKYLDLSISSYITFIR 231


>gi|313898593|ref|ZP_07832128.1| biotin--[acetyl-CoA-carboxylase] ligase [Clostridium sp. HGF2]
 gi|312956477|gb|EFR38110.1| biotin--[acetyl-CoA-carboxylase] ligase [Clostridium sp. HGF2]
          Length = 317

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCR-----P 69
              +   P    ++A+   +S   + K++  L + G  + +   +  G +L        
Sbjct: 10 ELEQNRTKPVSGQKLAQRLHVSRNAVCKMIHTLNEEGFEIASFPRK--GYQLAETSNKLS 67

Query: 70 ADQITIL 76
          A+ I++ 
Sbjct: 68 AEAISVY 74


>gi|309779512|ref|ZP_07674273.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Ralstonia sp. 5_7_47FAA]
 gi|308921753|gb|EFP67389.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Ralstonia sp. 5_7_47FAA]
          Length = 118

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR-PA 70
          R +         P  +S++A+   IS   + + L  L  +G+V +   + G VR CR   
Sbjct: 21 RAM--LVQLVRGPASVSELAQPLDISLPAVMQHLAVLENSGLVRSE--KVGRVRTCRIEP 76

Query: 71 DQITILD 77
          + +++ +
Sbjct: 77 EALSLAE 83


>gi|295099983|emb|CBK89072.1| Transcriptional regulators [Eubacterium cylindroides T2-87]
          Length = 270

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +L       D       I E   IS   + K ++ L++ G +   RG+ 
Sbjct: 32 ILTGILKEGDQMLPEVSICETLNISRSTVRKTMEMLIEDGYLIRRRGKG 80


>gi|253574146|ref|ZP_04851488.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251846623|gb|EES74629.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 132

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
            + +     +  I+    IS   + K L+ L +AG+V   + GR    RL    
Sbjct: 24 LKLLSGQELPLKDISSRFPISRTAVSKHLRILAEAGLVRERKVGRETRYRLDADP 78


>gi|239932892|ref|ZP_04689845.1| GntR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 95

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVET-VRGRR 61
           Q+AE   +S   + + L+ L + G+V T  RG  
Sbjct: 44 RQLAEHFGVSRETVRQALRMLRRDGLVATDRRGSH 78


>gi|225571056|ref|ZP_03780073.1| hypothetical protein CLOHYLEM_07155 [Clostridium hylemonae DSM
          15053]
 gi|225160137|gb|EEG72756.1| hypothetical protein CLOHYLEM_07155 [Clostridium hylemonae DSM
          15053]
          Length = 309

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          ++Y  +          +AE   +S   +++ L  L  AGI V   +G+ GG+RL
Sbjct: 19 ILYL-LMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQGGGIRL 71


>gi|170694486|ref|ZP_02885639.1| transcriptional regulator, IclR family [Burkholderia graminis
          C4D1M]
 gi|170140620|gb|EDT08795.1| transcriptional regulator, IclR family [Burkholderia graminis
          C4D1M]
          Length = 261

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          G+R+L + A   +    ++ IA+A  +      ++L  LV+ G V 
Sbjct: 6  GLRILDWLASQGEGAGLVA-IADALSLPRSTCHRLLTDLVEGGYVR 50


>gi|161521073|ref|YP_001584500.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189352749|ref|YP_001948376.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160345123|gb|ABX18208.1| transcriptional regulator, IclR family [Burkholderia multivorans
          ATCC 17616]
 gi|189336771|dbj|BAG45840.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 273

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66
           + VL   A     P  +SQ+A    I +  L ++++ L   G V      RG   G+ L
Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLEARGYVIHMPDSRGHDRGIAL 79

Query: 67 CRPADQ 72
             A Q
Sbjct: 80 GPRAAQ 85


>gi|126701184|ref|YP_001090081.1| bifunctional biotin operon
          repressor/biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile 630]
 gi|255308591|ref|ZP_05352762.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile ATCC 43255]
 gi|115252621|emb|CAJ70464.1| BirA bifunctional protein (Includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase)
          [Clostridium difficile]
          Length = 325

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          +        ++++   +S   ++K ++ L + G  +E+V  +  G RL      
Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63


>gi|27382971|ref|NP_774500.1| hypothetical protein blr7860 [Bradyrhizobium japonicum USDA 110]
 gi|27356144|dbj|BAC53125.1| blr7860 [Bradyrhizobium japonicum USDA 110]
          Length = 326

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
            R+L     +         ++A+AC +S   +++ +  L  +G+ V   RG  GG RL
Sbjct: 3  ASRMLSILTTLQARGQVTAPELAQACEVSVRTIYRDIDALAASGVPVYADRGAEGGYRL 61


>gi|117918641|ref|YP_867833.1| biotin--protein ligase [Shewanella sp. ANA-3]
 gi|117610973|gb|ABK46427.1| biotin--acetyl-CoA-carboxylase ligase [Shewanella sp. ANA-3]
          Length = 319

 Score = 34.2 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILD 77
          + +++     ++A    +S   + K +  L   G+ + +V+GR  G +L  P   I    
Sbjct: 15 LSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGR--GYKLANPISLIDSAR 72

Query: 78 VVKATEESFFVAECFASHKID 98
          ++++ +       CF   +I 
Sbjct: 73 LIQSID-----NRCFYFDEIP 88


>gi|313632065|gb|EFR99163.1| helix-turn-helix type 11 domain-containing protein [Listeria
          seeligeri FSL N1-067]
          Length = 298

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          R+L    +  +     S++AE   +S   +++ +  L+ AG  V  + G+ GG  
Sbjct: 5  RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFM 59


>gi|313899055|ref|ZP_07832582.1| transcriptional regulator, GntR family [Clostridium sp. HGF2]
 gi|312956254|gb|EFR37895.1| transcriptional regulator, GntR family [Clostridium sp. HGF2]
          Length = 124

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ND    +  +A    ++   + K  Q L + G + + +G+ 
Sbjct: 32 NDKLPSVRAMASQIGVNPNTVAKAYQELEEHGYIYSEKGKG 72


>gi|295098895|emb|CBK87984.1| Predicted transcriptional regulator [Eubacterium cylindroides
          T2-87]
          Length = 314

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          I++LM             ++A+    +   + +  + LV AG  ++ V+GR GG  L
Sbjct: 8  IKMLMLL--KARGKMNTLELAKELETNPRNIREFKKELVTAGYNIQEVKGRYGGYYL 62


>gi|209518597|ref|ZP_03267416.1| transcriptional regulator, GntR family [Burkholderia sp. H160]
 gi|209500961|gb|EEA00998.1| transcriptional regulator, GntR family [Burkholderia sp. H160]
          Length = 243

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             DY     ++A    ++   L + +  LV+AG+VE   GR 
Sbjct: 31 APGDYLPSEGELASRFGVNRHTLRRAIDELVEAGLVERRHGRG 73


>gi|171321564|ref|ZP_02910499.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MEX-5]
 gi|171093162|gb|EDT38375.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MEX-5]
          Length = 274

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|160881381|ref|YP_001560349.1| AraC family transcriptional regulator [Clostridium phytofermentans
           ISDg]
 gi|160430047|gb|ABX43610.1| transcriptional regulator, AraC family [Clostridium phytofermentans
           ISDg]
          Length = 292

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 9   YGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y + R++ Y   + ++   + QIA    +S +++ KI + 
Sbjct: 180 YAVKRIINYLMENYEHKISLDQIAHNMYLSPVYISKIFKE 219


>gi|94263024|ref|ZP_01286843.1| regulatory protein, MarR [delta proteobacterium MLMS-1]
 gi|93456567|gb|EAT06675.1| regulatory protein, MarR [delta proteobacterium MLMS-1]
          Length = 227

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +RVL   A       RISQ+A +  I +     +L  L + G+V   RG  G
Sbjct: 107 LRVLREIA--GAGRMRISQVANSLAIHQSTASNLLDKLEQRGLVARQRGGVG 156


>gi|66391268|ref|YP_238584.1| ORF013 [Staphylococcus phage Twort]
 gi|62637198|gb|AAX92309.1| ORF013 [Staphylococcus phage Twort]
          Length = 495

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAG-IVETV-RGRRGGV 64
              ++AE   IS   L   L+ L   G IV +  RG  GG 
Sbjct: 24 TTKKELAEKLNISLSALTSNLKTLENEGKIVTSTKRGNNGGF 65


>gi|24216230|ref|NP_713711.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|24197488|gb|AAN50729.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
          Length = 126

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           A        + Q+AE   IS   + K L+ L KAG++   RGR
Sbjct: 25 LATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLI--SRGR 66


>gi|56478360|ref|YP_159949.1| transcriptional regulator Dnr/Nnr type [Aromatoleum aromaticum
           EbN1]
 gi|56314403|emb|CAI09048.1| Transcriptional regulator, Dnr/Nnr type [Aromatoleum aromaticum
           EbN1]
          Length = 229

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           P     IA    ++   L +I   LV AG++ TV G+ 
Sbjct: 179 PTSKQVIASRLNLTPETLSRIFHDLVNAGLI-TVHGKH 215


>gi|55376747|ref|YP_134598.1| cell division control protein 6 homolog 1 [Haloarcula marismortui
           ATCC 43049]
 gi|62286608|sp|Q5V6G0|CDC6C_HALMA RecName: Full=Cell division control protein 6 homolog 12;
           Short=CDC6 homolog 12
 gi|55229472|gb|AAV44892.1| cell division control protein 6 homolog 1 [Haloarcula marismortui
           ATCC 43049]
          Length = 414

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 22/104 (21%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQI-------AEACCISELF---LFKILQPLVKAG 52
           LT+     +  ++        P R   I       AE   I  L    +   L  L   G
Sbjct: 294 LTQHGHLVVYAMVTLDQEGKTPARTRDIRPRYTNFAEKAGIDPLVPRRMRDHLGELSMLG 353

Query: 53  IVETV---RGRRGG----VRLCRPADQITILDVVKATEESFFVA 89
           I+  +    GRRGG      L    +      ++ A E++    
Sbjct: 354 IISAIERNEGRRGGTYREYSLEMDPE-----MILAALEKTVDDV 392


>gi|119718282|ref|YP_925247.1| GntR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119538943|gb|ABL83560.1| transcriptional regulator, GntR family [Nocardioides sp. JS614]
          Length = 242

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 11 IRVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +R L+     A   D     +++++   +S   + + L+ L    +V T RG  GG
Sbjct: 29 LRSLIVGGQLA-PGDRLPSEAELSDLFGVSRSTVREALRALSSRDLVITTRGSTGG 83


>gi|326330297|ref|ZP_08196607.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium
          Broad-1]
 gi|325951834|gb|EGD43864.1| transcriptional regulator, MarR family [Nocardioidaceae bacterium
          Broad-1]
          Length = 166

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
             DYG+  +   +   D   R++++A     +   L  +++ L   G++E
Sbjct: 41 THFDYGVLAM--LSEAPDRTLRMTELAGYTNATLPRLSNVVKRLADRGLIE 89


>gi|322371751|ref|ZP_08046294.1| transcription repressor [Haladaptatus paucihalophilus DX253]
 gi|320548636|gb|EFW90307.1| transcription repressor [Haladaptatus paucihalophilus DX253]
          Length = 223

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++ +      +  P   S+IAE   ++   +  +++ L   G+++  R +  GV L 
Sbjct: 8  DY-LKAIYTLQKEDGGPVATSEIAEYLGVTPPTVTSMIEKLTDRGLLD--REKYKGVELT 64

Query: 68 RPADQITILDVVK 80
             + + + +V++
Sbjct: 65 PEGETVAL-EVLR 76


>gi|295398612|ref|ZP_06808643.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Aerococcus
          viridans ATCC 11563]
 gi|294973152|gb|EFG48948.1| possible biotin--[acetyl-CoA-carboxylase] ligase [Aerococcus
          viridans ATCC 11563]
          Length = 333

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL----- 66
          ++L Y   H  + +   ++A+   +S   ++K ++ L   G  E +R  + G  L     
Sbjct: 6  KLLAYFLDHPGHFHTGPELADHFQVSRNAIWKAVKQLETDGY-EIIRHPKNGYALENLNQ 64

Query: 67 CRPADQIT 74
               QIT
Sbjct: 65 AIDPGQIT 72


>gi|293611232|ref|ZP_06693530.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826483|gb|EFF84850.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 250

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1  MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +    ++ L+   +     D      Q+A +  +S   L + +Q L   G++ + 
Sbjct: 1  MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59

Query: 58 RG 59
          RG
Sbjct: 60 RG 61


>gi|288919885|ref|ZP_06414208.1| GntR domain protein [Frankia sp. EUN1f]
 gi|288348717|gb|EFC82971.1| GntR domain protein [Frankia sp. EUN1f]
          Length = 261

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 14/67 (20%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------------ADQIT 74
            +     +S   L + L+ L   G++   RG  GG+   RP              A  + 
Sbjct: 46  DLVARFGVSRPSLREALRILEAEGLISVKRGVLGGIVAHRPNHRMTARTAALVLQARDVP 105

Query: 75  ILDVVKA 81
           + DV +A
Sbjct: 106 LADVYEA 112


>gi|228932075|ref|ZP_04094967.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228827658|gb|EEM73400.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 326

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
             +IA    IS   + + +  L   G+ +   +GR GG +
Sbjct: 30 TAQEIANQFNISVRTVHRYIVDLSDMGLPIYAEQGRNGGYK 70


>gi|226312331|ref|YP_002772225.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226095279|dbj|BAH43721.1| probable transcriptional regulator [Brevibacillus brevis NBRC
          100599]
          Length = 220

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++   +        +++A    +S   + + L+ L   G++E+V G  
Sbjct: 24 KAIIMLELKPGQRVNDNELAALFGVSRTPVREALKRLEDEGLIESVPGSH 73


>gi|159042050|ref|YP_001541302.1| regulatory protein ArsR [Caldivirga maquilingensis IC-167]
 gi|157920885|gb|ABW02312.1| regulatory protein ArsR [Caldivirga maquilingensis IC-167]
          Length = 104

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKI-LQPLVKAGIVETV 57
          +R++   A++      +S IA+   +S   L K+ L  L KAG+V + 
Sbjct: 22 LRIIAILAMNGSLY--LSDIAKRLGVSRA-LAKVHLVKLQKAGLVRSS 66


>gi|187919092|ref|YP_001888123.1| IclR family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187717530|gb|ACD18753.1| transcriptional regulator, IclR family [Burkholderia phytofirmans
          PsJN]
          Length = 278

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGV 64
           +R L           P  +SQ++    I +  L ++++ L   G V      RG   G+
Sbjct: 19 ALRALAVLEQLAGAGQPFSLSQLSLRLHIPKATLMRLIESLETQGYVMHLPDSRGTDRGI 78

Query: 65 RLCRPADQITI 75
           L   A Q+ +
Sbjct: 79 TLGPKAAQLAL 89


>gi|52222871|gb|AAU34212.1| putative transcriptional regulator MppS [Streptomyces
           hygroscopicus]
          Length = 329

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
               ++A+   IS     K    L ++G+V T R R 
Sbjct: 240 CSTGELADRLGISLAGASKHAAVLRRSGLVTTSRNRN 276


>gi|78062858|ref|YP_372766.1| ArsR family transcriptional regulator [Burkholderia sp. 383]
 gi|77970743|gb|ABB12122.1| transcriptional regulator, ArsR family [Burkholderia sp. 383]
          Length = 118

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
               D    + ++A    +S   + K ++ L KAG++   +RGR
Sbjct: 27 LGRLRDGSLTVGELAAPYDVSLNAISKHVKTLEKAGLIRREIRGR 71


>gi|45656564|ref|YP_000650.1| ArsR family transcriptional regulator [Leptospira interrogans
          serovar Copenhageni str. Fiocruz L1-130]
 gi|45599799|gb|AAS69287.1| transcriptional regulator (ArsR family) [Leptospira interrogans
          serovar Copenhageni str. Fiocruz L1-130]
          Length = 126

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           A        + Q+AE   IS   + K L+ L KAG++   RGR
Sbjct: 25 LATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLI--SRGR 66


>gi|158313512|ref|YP_001506020.1| regulatory protein GntR HTH [Frankia sp. EAN1pec]
 gi|158108917|gb|ABW11114.1| regulatory protein GntR HTH [Frankia sp. EAN1pec]
          Length = 275

 Score = 34.2 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             D      ++ E   I+   L + L+ L   G+V  +RGR GG R+  P
Sbjct: 33 RPGDRFPTEDELMEIFGIARTTLREALRILEAEGLVTVLRGRHGGPRVTSP 83


>gi|327542794|gb|EGF29256.1| Plasmid pRiA4b ORF-3-like protein [Rhodopirellula baltica WH47]
          Length = 298

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 5  KRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +  Y    L Y   +      P   S+IAEA  +S   + ++++ L K G++    G 
Sbjct: 7  TQGRY----LSYIHAYTVGFGLPPAESEIAEAIGVSPPSVNQMMKTLQKKGLIHREPGV 61


>gi|309776016|ref|ZP_07671008.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308916298|gb|EFP62046.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 122

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 20/46 (43%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++      +     + ++A    ++   + + L  L ++G+V + R
Sbjct: 21 IVTDIYQPSQKIPSVRELAVEFGVNPNTVQRALSELERSGLVASER 66


>gi|302523013|ref|ZP_07275355.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302431908|gb|EFL03724.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 274

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R L+   +  +    + QI +   +S + + + +  L + G+V +V    GGVR+  P
Sbjct: 7  RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 61


>gi|282866127|ref|ZP_06275175.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE]
 gi|282559166|gb|EFB64720.1| transcriptional regulator, ArsR family [Streptomyces sp. ACTE]
          Length = 126

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++ + R
Sbjct: 47 LRLLSMIASREGGEICVCDLTPAFDLSQPTISHHLKLLKQAGLIGSER 94


>gi|163816194|ref|ZP_02207562.1| hypothetical protein COPEUT_02378 [Coprococcus eutactus ATCC 27759]
 gi|158448614|gb|EDP25609.1| hypothetical protein COPEUT_02378 [Coprococcus eutactus ATCC 27759]
          Length = 253

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R + Y   H +    I+ IAE   +   +L K+   
Sbjct: 144 VRAMDYVYDHLNERIEITGIAEFVGVERSYLSKLFHK 180


>gi|160932494|ref|ZP_02079884.1| hypothetical protein CLOLEP_01332 [Clostridium leptum DSM 753]
 gi|156868453|gb|EDO61825.1| hypothetical protein CLOLEP_01332 [Clostridium leptum DSM 753]
          Length = 232

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ EA  +S   + + +Q L   GIV + +G+ 
Sbjct: 38 ELREAFSVSRSTVRQAVQRLSALGIVRSRQGKG 70


>gi|148975173|ref|ZP_01812097.1| Transcriptional regulator [Vibrionales bacterium SWAT-3]
 gi|145965097|gb|EDK30347.1| Transcriptional regulator [Vibrionales bacterium SWAT-3]
          Length = 475

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +D    I Q++E   +S+  + +  Q L   G V +V   + G R
Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71


>gi|152997355|ref|YP_001342190.1| transcriptional regulator IclR [Marinomonas sp. MWYL1]
 gi|150838279|gb|ABR72255.1| Transcriptional regulator IclR [Marinomonas sp. MWYL1]
          Length = 260

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRG 59
          RVL  +     ++ P   + +A +  I +  + ++LQ L   G V+T  RG
Sbjct: 15 RVLEIIELVSISERPLSPADLAFSLDIPKPSIHRLLQQLEADGFVQTDWRG 65


>gi|42601196|gb|AAS21297.1| putative efflux pump regulator TbtR [Pseudomonas stutzeri]
          Length = 259

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          ++     +      ++ IA+   +    + +I+  L    +VET+ G  GG R
Sbjct: 25 IMRALGDNPQG-LSLAAIAQIVDLPRSTVQRIITALEAEYLVETL-GPSGGFR 75


>gi|32476915|ref|NP_869909.1| lexA repressor [Rhodopirellula baltica SH 1]
 gi|32447463|emb|CAD79052.1| probable lexA repressor [Rhodopirellula baltica SH 1]
          Length = 298

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 5  KRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           +  Y    L Y   +      P   S+IAEA  +S   + ++++ L K G++    G 
Sbjct: 7  TQGRY----LSYIHAYTVGFGLPPAESEIAEAIGVSPPSVNQMMKTLQKKGLIHREPGV 61


>gi|19551275|ref|NP_599277.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62388920|ref|YP_224322.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|41324253|emb|CAF18593.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC
           13032]
          Length = 563

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           AI+   P  I +IA     +   L  +L+ LV+AG+V   
Sbjct: 511 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 550


>gi|330883004|gb|EGH17153.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 200

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|318059613|ref|ZP_07978336.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318077596|ref|ZP_07984928.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 282

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R L+   +  +    + QI +   +S + + + +  L + G+V +V    GGVR+  P
Sbjct: 15 RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 69


>gi|271965973|ref|YP_003340169.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270509148|gb|ACZ87426.1| Transcriptional regulators-like protein [Streptosporangium roseum
           DSM 43021]
          Length = 261

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 25/52 (48%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            + +L+  +   +    I ++A++  +S   +  ++  L + G+ + V GR 
Sbjct: 138 ALDILIRLSAATEDGLSIGELAQSAGVSSRNVTGLVDTLERDGLAQRVPGRH 189


>gi|229084354|ref|ZP_04216634.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44]
 gi|228698894|gb|EEL51599.1| Transcriptional regulator, GntR [Bacillus cereus Rock3-44]
          Length = 239

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D      ++ E+  +S   + + +Q L K G +    G+ 
Sbjct: 28 QEHDKLPSERELCESHDVSRTTVRQTMQELEKEGYIYKKHGKG 70


>gi|154251894|ref|YP_001412718.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
 gi|154155844|gb|ABS63061.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
          Length = 145

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +  +      +IAEA  ++   L   L+ L  AG+V + R
Sbjct: 57 VAGEGGLAAGEIAEALGVAPATLSFHLKELSHAGLVASRR 96


>gi|254977184|ref|ZP_05273656.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-66c26]
 gi|255316265|ref|ZP_05357848.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-76w55]
 gi|255518926|ref|ZP_05386602.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-97b34]
 gi|255652105|ref|ZP_05399007.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-37x79]
 gi|260685078|ref|YP_003216363.1| BirA bifunctional protein [Clostridium difficile CD196]
 gi|260688736|ref|YP_003219870.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile R20291]
 gi|306521839|ref|ZP_07408186.1| BirA bifunctional protein [includes: biotin operon repressor and
          biotin--[acetyl-CoA-carboxylase] synthetase
          [Clostridium difficile QCD-32g58]
 gi|260211241|emb|CBA66767.1| BirA bifunctional protein [Clostridium difficile CD196]
 gi|260214753|emb|CBE07449.1| BirA bifunctional protein [Clostridium difficile R20291]
          Length = 325

 Score = 34.2 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQ 72
          +        ++++   +S   ++K ++ L + G  +E+V  +  G RL      
Sbjct: 12 NKSEFISGEELSKQLGVSRAAIWKHMKALKEEGYNIESVNKK--GYRLAENPTD 63


>gi|314922919|gb|EFS86750.1| putative histidine utilization repressor [Propionibacterium acnes
          HL001PA1]
 gi|314966369|gb|EFT10468.1| putative histidine utilization repressor [Propionibacterium acnes
          HL082PA2]
 gi|314980890|gb|EFT24984.1| putative histidine utilization repressor [Propionibacterium acnes
          HL110PA3]
 gi|315090171|gb|EFT62147.1| putative histidine utilization repressor [Propionibacterium acnes
          HL110PA4]
 gi|315093515|gb|EFT65491.1| putative histidine utilization repressor [Propionibacterium acnes
          HL060PA1]
 gi|315103096|gb|EFT75072.1| putative histidine utilization repressor [Propionibacterium acnes
          HL050PA2]
 gi|327326968|gb|EGE68749.1| transcription regulator, GntR family [Propionibacterium acnes
          HL103PA1]
          Length = 241

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61


>gi|308069031|ref|YP_003870636.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858310|gb|ADM70098.1| Transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 150

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          R+L Y    ++ P  I +I+    + +  L  IL  L KAG +
Sbjct: 41 RILFYLWTKDEIP--IHEISRITNLQKSTLTSILTKLEKAGHI 81


>gi|294671269|ref|ZP_06736121.1| hypothetical protein NEIELOOT_02978 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291306996|gb|EFE48239.1| hypothetical protein NEIELOOT_02978 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 133

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          L      ++ P+ ++++AEA  + +  +   L  L +AG+V
Sbjct: 59 LAVLCKLHERPHNVTELAEAAGLPQAAMSSQLALLREAGLV 99


>gi|289644364|ref|ZP_06476447.1| transcriptional regulator, HxlR family [Frankia symbiont of
          Datisca glomerata]
 gi|289505839|gb|EFD26855.1| transcriptional regulator, HxlR family [Frankia symbiont of
          Datisca glomerata]
          Length = 141

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVE 55
          + +G+ VL   A     P R  ++  +   ISE  L + L+ LV+ G+VE
Sbjct: 39 SRWGVLVLTGLAT---GPLRFHELRTKIEGISEKMLSQTLRTLVRDGLVE 85


>gi|288556273|ref|YP_003428208.1| hypothetical protein BpOF4_16355 [Bacillus pseudofirmus OF4]
 gi|288547433|gb|ADC51316.1| hypothetical protein BpOF4_16355 [Bacillus pseudofirmus OF4]
          Length = 325

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 12 RVL-MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          R+L +  ++  +      ++A    ++E  + + +  L  AGI V   RG+ GG +
Sbjct: 5  RLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWK 60


>gi|282854350|ref|ZP_06263687.1| putative histidine utilization repressor [Propionibacterium acnes
          J139]
 gi|282583803|gb|EFB89183.1| putative histidine utilization repressor [Propionibacterium acnes
          J139]
          Length = 251

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 31 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 71


>gi|257465161|ref|ZP_05629532.1| fatty acid metabolism regulator [Actinobacillus minor 202]
 gi|257450821|gb|EEV24864.1| fatty acid metabolism regulator [Actinobacillus minor 202]
          Length = 241

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++AE   ++   L ++LQ L + G ++   G+
Sbjct: 39 RELAERIGVTRTTLREVLQRLARDGWLQIQHGK 71


>gi|284174552|ref|ZP_06388521.1| hypothetical protein Ssol98_07807 [Sulfolobus solfataricus 98/2]
 gi|261601973|gb|ACX91576.1| regulatory protein MarR [Sulfolobus solfataricus 98/2]
          Length = 299

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD- 77
          +    P   +++++   +S+  L ++L  L K GIV+  +       L +   ++++   
Sbjct: 11 LKEKGPISQTELSKLSGLSKSRLSEVLSELEKQGIVKRRK------VLGKNL-EVSLSQD 63

Query: 78 ------VVKATEESFFV 88
                +++A E  F +
Sbjct: 64 RFLRLGIIRAAEYPFII 80


>gi|226360187|ref|YP_002777965.1| GntR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226238672|dbj|BAH49020.1| putative GntR family transcriptional regulator [Rhodococcus
          opacus B4]
          Length = 245

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            A   +      ++AEA  +S   + + +Q L +AG+VE  +G
Sbjct: 27 DLAA-GEALPSERRLAEAFGVSRPAVREAIQKLAQAGLVEVRQG 69


>gi|255306090|ref|ZP_05350262.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile ATCC 43255]
          Length = 666

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I E   ISE  + K+L  L + G + +  GR G
Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651


>gi|255100201|ref|ZP_05329178.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile QCD-63q42]
          Length = 666

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I E   ISE  + K+L  L + G + +  GR G
Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651


>gi|225017185|ref|ZP_03706377.1| hypothetical protein CLOSTMETH_01111 [Clostridium methylpentosum
          DSM 5476]
 gi|224950104|gb|EEG31313.1| hypothetical protein CLOSTMETH_01111 [Clostridium methylpentosum
          DSM 5476]
          Length = 295

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          M LT++      +L Y   H   P     +A A  +S   + K +  L + G +
Sbjct: 1  MKLTRKQ---FEILTYLEKHR-APITQRDLARATGMSLGSVNKTITQLTECGYL 50


>gi|169835530|ref|ZP_02868718.1| transcriptional regulator, DeoR family protein [candidate
          division TM7 single-cell isolate TM7a]
          Length = 202

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          + N+   +++ +AE   +SE+ + K L+ L + G ++      GG  L + 
Sbjct: 14 LENEKKVKVTDLAEKFNVSEVIIRKNLKRLEQEGKLKRT---HGGAILLKE 61


>gi|220921980|ref|YP_002497281.1| Crp/Fnr family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946586|gb|ACL56978.1| transcriptional regulator, Crp/Fnr family [Methylobacterium
           nodulans ORS 2060]
          Length = 249

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D P   +++A+A  ++ + + + LQ L  AG+V T+RG R
Sbjct: 183 DLPMTQTELADALGLTTVHVNRTLQELRSAGLV-TLRGGR 221


>gi|153835997|ref|ZP_01988664.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus
           AQ3810]
 gi|260900553|ref|ZP_05908948.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus
           AQ4037]
 gi|149750751|gb|EDM61496.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus
           AQ3810]
 gi|308106959|gb|EFO44499.1| HTH-type transcriptional activator RhaS [Vibrio parahaemolyticus
           AQ4037]
          Length = 278

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
           + V+ Y   +      +  +AE   IS   L KIL  L
Sbjct: 172 LSVMGYLHQNYAEQFNLQDLAEQAGISTKQLSKILSRL 209


>gi|148559812|ref|YP_001259718.1| GntR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371069|gb|ABQ61048.1| transcriptional regulator, GntR family [Brucella ovis ATCC 25840]
          Length = 460

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 18 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 63


>gi|150401414|ref|YP_001325180.1| phosphate uptake regulator, PhoU [Methanococcus aeolicus
          Nankai-3]
 gi|150014117|gb|ABR56568.1| phosphate uptake regulator, PhoU [Methanococcus aeolicus
          Nankai-3]
          Length = 272

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P     IAE   IS  ++ K+++PLV   I++
Sbjct: 20 EPETQDDIAEKLNISRRYVAKLIKPLVDEDIIK 52


>gi|126458969|ref|YP_001055247.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM
           11548]
 gi|126248690|gb|ABO07781.1| transcriptional regulator, TrmB [Pyrobaculum calidifontis JCM
           11548]
          Length = 313

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           R+L Y            +IA    I    +F+ ++ L +AG+V     +RGG    R
Sbjct: 258 RILAYLRERGGAYES--EIARDLGIPRTTVFRAVRRLEEAGLVIVE--KRGGRNFVR 310


>gi|126698782|ref|YP_001087679.1| putative sigma-54 dependent transcriptional regulator [Clostridium
           difficile 630]
 gi|115250219|emb|CAJ68040.1| Transcriptional regulator, sigma-54-dependent [Clostridium
           difficile]
          Length = 666

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I E   ISE  + K+L  L + G + +  GR G
Sbjct: 619 IQEGIEISESKVRKVLSYLSECGYISSKSGRGG 651


>gi|118352502|ref|XP_001009522.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
           thermophila]
 gi|89291289|gb|EAR89277.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 286

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             I     I+   L KIL  L K   +++V+G  
Sbjct: 100 KDIGNKTGIATGTLTKILNQLKKKNWIKSVKGAN 133


>gi|39935325|ref|NP_947601.1| ArsR family transcriptional regulator ArsR1 [Rhodopseudomonas
          palustris CGA009]
 gi|39649177|emb|CAE27697.1| transcriptional regulator, ArsR family, ArsR1 [Rhodopseudomonas
          palustris CGA009]
          Length = 110

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H        +IA    + +  +   L  L +AGIV + R
Sbjct: 25 LVRHEPDGLAAGEIARQLDVPQNTMSAHLGILARAGIVRSER 66


>gi|84389405|ref|ZP_00991211.1| Transcriptional regulator [Vibrio splendidus 12B01]
 gi|84376920|gb|EAP93793.1| Transcriptional regulator [Vibrio splendidus 12B01]
          Length = 475

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
          +D    I Q++E   +S+  + +  Q L   G V +V   + G R
Sbjct: 29 DDRLPSIRQLSEQLGVSKNTVIRAYQELEATGWVYSV--PKSGYR 71


>gi|76787375|ref|YP_330457.1| cyclic nucleotide-binding domain-containing protein [Streptococcus
           agalactiae A909]
 gi|77405670|ref|ZP_00782758.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           H36B]
 gi|77411558|ref|ZP_00787901.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           CJB111]
 gi|76562432|gb|ABA45016.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           A909]
 gi|77162412|gb|EAO73380.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           CJB111]
 gi|77175743|gb|EAO78524.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           H36B]
          Length = 214

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 17  CAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVE 55
            AI         +S +A++  +S   L +++  +VK G+++
Sbjct: 153 LAIEEQGYFHLELSSLADSFGVSYRHLLRVIHDMVKEGLIQ 193


>gi|323484653|ref|ZP_08090015.1| hypothetical protein HMPREF9474_01766 [Clostridium symbiosum
           WAL-14163]
 gi|323694813|ref|ZP_08108968.1| GntR family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323402036|gb|EGA94372.1| hypothetical protein HMPREF9474_01766 [Clostridium symbiosum
           WAL-14163]
 gi|323501129|gb|EGB17036.1| GntR family Transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 123

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +    + Q+A+   I+   + K    L + G V+  R R   + L   AD+I     
Sbjct: 31  REGETLPSVRQLADDIGINMHTVNKAYSVLKQEGFVKLDRRRGAVISL--DADKIRA--- 85

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
           ++  E    V       +  C  V    +  ++    +AF
Sbjct: 86  IREMERDLSVI----LARGACKNVSREEVHRLVDSIFDAF 121


>gi|291442702|ref|ZP_06582092.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291345597|gb|EFE72553.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 126

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  +     +S+  +   L+ L +AG+V + R
Sbjct: 47 LRLLSLIASHAGGEACVCDLIGPFDVSQPTISHHLKVLREAGLVGSER 94


>gi|269124675|ref|YP_003298045.1| Crp/Fnr family transcriptional regulator [Thermomonospora curvata
           DSM 43183]
 gi|268309633|gb|ACY96007.1| transcriptional regulator, Crp/Fnr family [Thermomonospora curvata
           DSM 43183]
          Length = 243

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
           P R   +A    I+   L +IL+ L  AG++ +V+GRR           IT+ DV  A E
Sbjct: 178 PTRKHVLASRLNIAPETLSRILRDLSAAGLI-SVQGRR-----------ITLHDV-PALE 224

Query: 84  ESFFVA 89
               + 
Sbjct: 225 ARLEMT 230


>gi|290962406|ref|YP_003493588.1| IclR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260651932|emb|CBG75062.1| putative IclR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 248

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+L   A H   P  + ++ +   + +  + + L  L +AG +   R
Sbjct: 7  SLRILEAVAQHQ--PVTVGELTKLFGLPKSTVQRTLVTLNEAGWLRANR 53


>gi|320011702|gb|ADW06552.1| GntR domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 233

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD--V 78
               R  ++A+   +S   + ++++ L    +VE+ R         RP ++  + D  V
Sbjct: 27 PGLVLRTDELAQRFDVSRTVVREVIRVLESMHLVESRRRVG---VTVRPTEEWNVYDPQV 83

Query: 79 VK 80
          ++
Sbjct: 84 IR 85


>gi|256958502|ref|ZP_05562673.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis DS5]
 gi|256963058|ref|ZP_05567229.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          HIP11704]
 gi|257078184|ref|ZP_05572545.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis JH1]
 gi|294780762|ref|ZP_06746122.1| biotin-(acetyl-CoA-carboxylase) ligase [Enterococcus faecalis
          PC1.1]
 gi|307267877|ref|ZP_07549268.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX4248]
 gi|307273727|ref|ZP_07554954.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0855]
 gi|256948998|gb|EEU65630.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis DS5]
 gi|256953554|gb|EEU70186.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis
          HIP11704]
 gi|256986214|gb|EEU73516.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis JH1]
 gi|294452202|gb|EFG20644.1| biotin-(acetyl-CoA-carboxylase) ligase [Enterococcus faecalis
          PC1.1]
 gi|306509594|gb|EFM78637.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0855]
 gi|306515811|gb|EFM84333.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX4248]
 gi|315031929|gb|EFT43861.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0017]
 gi|315034150|gb|EFT46082.1| biotin-[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX0027]
 gi|329568120|gb|EGG49940.1| biotin--[acetyl-CoA-carboxylase] ligase [Enterococcus faecalis
          TX1467]
          Length = 330

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A++  +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQSLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|256760943|ref|ZP_05501523.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T3]
 gi|256682194|gb|EEU21889.1| biotin-acetyl-CoA-carboxylase ligase [Enterococcus faecalis T3]
          Length = 330

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 24/93 (25%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ ++     VL              ++A++  +S   ++K +  L K G  + +V+ + 
Sbjct: 1  MSTKSQ----VLTLLMKQTPAFLSGEEMAQSLSLSRTAIWKAINELKKDGYQITSVQNK- 55

Query: 62 GGVRLCR-----------------PADQITILD 77
           G RL +                 P   IT+L+
Sbjct: 56 -GYRLEKSDVLSAEGIQLALWPQTPPLTITVLE 87


>gi|322420904|ref|YP_004200127.1| ArsR family transcriptional regulator [Geobacter sp. M18]
 gi|320127291|gb|ADW14851.1| transcriptional regulator, ArsR family [Geobacter sp. M18]
          Length = 107

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQ 72
           + P  ++ IAE+  I++  + + L+ L  AG+V+  R    G      L + A +
Sbjct: 24 KNEPMSVNAIAESLGITQSAVSQHLRVLKSAGLVKDERR---GYWIYYELNKEALE 76


>gi|239980428|ref|ZP_04702952.1| putative transcriptional regulator [Streptomyces albus J1074]
          Length = 110

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 15 MYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  A+     P   + +A    +S   + + L+ L  AG  V   RGR GGV L
Sbjct: 9  LLLALQTRRDPVTTTDLAAETGVSVRTVLRDLRWLQDAGFPVLVERGRWGGVTL 62


>gi|271969139|ref|YP_003343335.1| ArsR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270512314|gb|ACZ90592.1| putative transcriptional regulator, ArsR family [Streptosporangium
           roseum DSM 43021]
          Length = 328

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           RVL+  A     P   +Q+     +S   +   L  L +AG+V   R  RG
Sbjct: 262 RVLLELA----GPATTTQLVTLLGLSLGTVGGHLAALRRAGLVTGSRTGRG 308


>gi|269127800|ref|YP_003301170.1| GntR family transcriptional regulator [Thermomonospora curvata
          DSM 43183]
 gi|268312758|gb|ACY99132.1| transcriptional regulator, GntR family [Thermomonospora curvata
          DSM 43183]
          Length = 251

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           R DY                 ++++     +SE+   + +  L   G+VET RG  
Sbjct: 19 TRGDY---------PPGSRLPTLARLCRMHGVSEIVARQAIALLRGEGLVETRRGGG 66


>gi|227530355|ref|ZP_03960404.1| GntR family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
 gi|227349716|gb|EEJ40007.1| GntR family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
          Length = 127

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                  +Q+++   I+   + K +  LV AG++E  RGR 
Sbjct: 30 EGSQVPSTTQLSQQLHINPATVLKGMNILVDAGLIEKHRGRG 71


>gi|222153152|ref|YP_002562329.1| GntR family regulatory protein [Streptococcus uberis 0140J]
 gi|222113965|emb|CAR42240.1| GntR family regulatory protein [Streptococcus uberis 0140J]
          Length = 122

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + + AE   ++   + +    L + GIV + R
Sbjct: 31 GDQLPTVREYAETAGVNPNTMQRAFTELEREGIVYSQR 68


>gi|194016944|ref|ZP_03055557.1| manganese [Bacillus pumilus ATCC 7061]
 gi|194011550|gb|EDW21119.1| manganese [Bacillus pumilus ATCC 7061]
          Length = 144

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G++ T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLILTPKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|110679485|ref|YP_682492.1| ROK family transcription regulator [Roseobacter denitrificans OCh
           114]
 gi|109455601|gb|ABG31806.1| transcription regulator, ROK family FrcR, putative [Roseobacter
           denitrificans OCh 114]
          Length = 402

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 23/92 (25%)

Query: 10  GIRV----LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR---GRRG 62
           G+R     L+   +H +     S+IA    +S   +  IL+ L   G+V   R   GR G
Sbjct: 18  GLRAYNERLILSVLHRNGQLPGSEIARQTKLSAQTVSVILRKLESDGLVTKGRPSKGRVG 77

Query: 63  ----------------GVRLCRPADQITILDV 78
                           G +L R    + + D+
Sbjct: 78  KPSIPMALNPKGAISVGCKLGRRGSDVLLTDL 109


>gi|120402259|ref|YP_952088.1| helix-turn-helix, type 11 domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119955077|gb|ABM12082.1| Helix-turn-helix, type 11 domain protein [Mycobacterium
          vanbaalenii PYR-1]
          Length = 317

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 12 RVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          RVL    +          ++A    ++   + + +  L + G  V    G  GG +L 
Sbjct: 7  RVLQLLGLLQSRRVWSGEELAGRLGVTTRSVRRDVDRLRELGYPVHASTGHGGGYQLG 64


>gi|29830264|ref|NP_824898.1| GntR family transcriptional regulator [Streptomyces avermitilis
          MA-4680]
 gi|29607375|dbj|BAC71433.1| putative GntR-family transcriptional regulator [Streptomyces
          avermitilis MA-4680]
          Length = 252

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           I  +AE   +S     K L+ L   G+V  + G  
Sbjct: 35 SIKNLAEEWNVSTATAEKALRKLRNEGLVRGIHGIG 70


>gi|15889989|ref|NP_355670.1| GntR family transcriptional regulator [Agrobacterium tumefaciens
          str. C58]
 gi|15157956|gb|AAK88455.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens
          str. C58]
          Length = 238

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       +A+   +S   + + +  L   G VET +G  
Sbjct: 34 GDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGVG 74


>gi|83999844|emb|CAH60144.1| putative GntR-family transcriptional regulator [Streptomyces
          tenjimariensis]
          Length = 251

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           I  +AE   +S   + K L+ L   G+V  + G  
Sbjct: 35 SIKNLAEEWKVSTATVEKALRKLRNEGLVRGIHGIG 70


>gi|56807361|ref|ZP_00365351.1| COG4465: Pleiotropic transcriptional repressor [Streptococcus
           pyogenes M49 591]
          Length = 214

 Score = 34.2 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 155 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 200


>gi|332974963|gb|EGK11873.1| GntR family transcriptional regulator [Desmospora sp. 8437]
          Length = 126

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R+L       +    + ++A    ++   + +    L + GIVET RG+ 
Sbjct: 22 RILRRELAPGEKLPSVREMALESNVNPNTVQRTYSELERMGIVETRRGQG 71


>gi|330952878|gb|EGH53138.1| transcriptional regulator GntR [Pseudomonas syringae Cit 7]
          Length = 142

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+VET  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVETRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4]
 gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4]
          Length = 176

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
           A        I Q+AE   +S  +L +I + L K
Sbjct: 69  AQREAAQVSIRQLAERAGVSNPYLSQIERGLRK 101


>gi|315230041|ref|YP_004070477.1| transcriptional regulator TrmB [Thermococcus barophilus MP]
 gi|315183069|gb|ADT83254.1| transcriptional regulator TrmB [Thermococcus barophilus MP]
          Length = 354

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          +Y  I       + ++ ++  + +  L+ I+Q L++ G V+   GR             T
Sbjct: 24 VYLTIWTKNGATVKELLDSLDVHQPQLYNIIQSLIRKGFVKASAGR---------PRIYT 74

Query: 75 ILDVVKATE 83
            D+V   +
Sbjct: 75 ATDIVSLID 83


>gi|297798408|ref|XP_002867088.1| hypothetical protein ARALYDRAFT_491137 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297312924|gb|EFH43347.1| hypothetical protein ARALYDRAFT_491137 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 287

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GV 64
          +  P  +++ + A   S   L +I++ LV  G+ + V  + G   G 
Sbjct: 34 SSQPVTLTERSSAVSASPSHLRRIMRFLVHQGLFKEVPTKDGLATGY 80


>gi|293392506|ref|ZP_06636826.1| GntR family regulatory protein [Serratia odorifera DSM 4582]
 gi|291424908|gb|EFE98117.1| GntR family regulatory protein [Serratia odorifera DSM 4582]
          Length = 243

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       IA    +S + + +    LV++GI+ + RG  
Sbjct: 30 GDRLPTQKDIARQFDVSLIVVKQAWNALVESGIIASQRGTG 70


>gi|292654982|ref|YP_003534879.1| transcription repressor [Haloferax volcanii DS2]
 gi|291372853|gb|ADE05080.1| transcription repressor [Haloferax volcanii DS2]
          Length = 231

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++ +    +    P   S IAE    +   +  ++  L + G+V+  R +  GV L 
Sbjct: 8  DY-LKAIYTLQMEQGPPVSTSDIAEYLGKTPPTVTSMVGKLEERGLVD--REKYKGVELT 64

Query: 68 RPADQITILDVVK 80
             + + + +V++
Sbjct: 65 AEGETVAL-EVLR 76


>gi|288923255|ref|ZP_06417394.1| transcriptional regulator, ArsR family [Frankia sp. EUN1f]
 gi|288345399|gb|EFC79789.1| transcriptional regulator, ArsR family [Frankia sp. EUN1f]
          Length = 110

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          IR L      ++    +S++     +    L + L  L +AG+V T +            
Sbjct: 22 IRALELL---SEREWSVSELVPEVGLEASHLSQQLGVLRRAGLVTTRKQGNTVFYAVASP 78

Query: 71 DQITILDVVKAT 82
          + +T+L V ++ 
Sbjct: 79 EIVTLLAVARSI 90


>gi|266620734|ref|ZP_06113669.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM
           13479]
 gi|288867635|gb|EFC99933.1| transcriptional regulator, AraC family [Clostridium hathewayi DSM
           13479]
          Length = 221

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 2   HLTKRTDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
            ++  + YG   + + Y  ++   P  I QIA    +S ++L K+ +
Sbjct: 112 KISTES-YGYIQKAVQYIELNYSQPITIPQIAGFVGVSSIYLTKLFK 157


>gi|317048825|ref|YP_004116473.1| GntR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950442|gb|ADU69917.1| transcriptional regulator, GntR family [Pantoea sp. At-9b]
          Length = 228

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          CAIH        +++    +S   + +    L +AG+V+
Sbjct: 28 CAIHPGSLLSEKEVSARFNVSRQPVREAFIKLAEAGLVQ 66


>gi|302524651|ref|ZP_07276993.1| predicted protein [Streptomyces sp. AA4]
 gi|302433546|gb|EFL05362.1| predicted protein [Streptomyces sp. AA4]
          Length = 160

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          TDY   VL+  A   +   R++ +A+A  +S   + ++++ +V  G+V+ V+
Sbjct: 42 TDY--TVLVSLAEAPEGRLRLTDLAQATALSLSRISRVVEAMVGRGLVKKVK 91


>gi|91790927|ref|YP_551878.1| GntR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700807|gb|ABE46980.1| transcriptional regulator, GntR family [Polaromonas sp. JS666]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +AE   +S   + +++  L   G+VET +G  
Sbjct: 46 RTMAEEFGVSRTVVREVISRLKSEGLVETRQGSG 79


>gi|50085009|ref|YP_046519.1| ArsR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530985|emb|CAG68697.1| putative transcriptional regulator (ArsR family) [Acinetobacter
          sp. ADP1]
          Length = 102

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + +L Y A        +SQI E   I++  L + L  L K+ +V T R
Sbjct: 30 LLILCYLAKQE---LNVSQIEEKTNITQPTLSQQLMMLRKSDVVHTRR 74


>gi|39934057|ref|NP_946333.1| transcriptional regulator PcaR [Rhodopseudomonas palustris
          CGA009]
 gi|39647905|emb|CAE26425.1| putativetranscriptional regulator PcaR, IclR family
          [Rhodopseudomonas palustris CGA009]
          Length = 263

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          G+RV +        P  +S +A+AC +      +IL  L  AG V +
Sbjct: 25 GLRV-IEAFGAEKRPMTLSDVAKACGLPRATARRILLTLQSAGYVSS 70


>gi|332186680|ref|ZP_08388423.1| bacterial regulatory helix-turn-helix s, AraC family protein
           [Sphingomonas sp. S17]
 gi|332013332|gb|EGI55394.1| bacterial regulatory helix-turn-helix s, AraC family protein
           [Sphingomonas sp. S17]
          Length = 356

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           +R L+    + + P  ++ IAE   IS+  L +  Q
Sbjct: 237 LRALLIAQQNIETPLSVADIAERMKISKRQLERRFQ 272


>gi|319948794|ref|ZP_08022910.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea
          P4]
 gi|319437501|gb|EFV92505.1| transcriptional regulator, ArsR family protein [Dietzia cinnamea
          P4]
          Length = 113

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGR 60
          +R+L + A           + E   IS+  +   L+ LV+AG +V   RG+
Sbjct: 42 LRLLSHIAAQGCDSVCACDLLEVVDISQPTISHHLKKLVEAGLLVREQRGK 92


>gi|317487440|ref|ZP_07946227.1| bacterial transcriptional regulator [Bilophila wadsworthia 3_1_6]
 gi|316921299|gb|EFV42598.1| bacterial transcriptional regulator [Bilophila wadsworthia 3_1_6]
          Length = 273

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +  +A+A  + +  L +IL  L + G V +  G+ G   L 
Sbjct: 31 LRDLAKASGLPKGTLQRILLTLCELGFV-SQDGKGGAYSLT 70


>gi|291545380|emb|CBL18488.1| AraC-type DNA-binding domain-containing proteins [Ruminococcus sp.
           SR1/5]
          Length = 175

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ---PLVKAGIVETVR 58
           +++  DY        + H     RI ++AE C ISE  L +I      +     + T+R
Sbjct: 57  ISRFQDY-------ISDHYMEDLRIDELAEYCHISETHLRRIFTTYMKMSPLEYINTIR 108


>gi|289435702|ref|YP_003465574.1| hypothetical protein lse_2341 [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
 gi|289171946|emb|CBH28492.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
          str. SLCC3954]
          Length = 298

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          R+L    +  +     S++AE   +S   +++ +  L+ AG  V  + G+ GG  
Sbjct: 5  RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFM 59


>gi|302558534|ref|ZP_07310876.1| secreted protein [Streptomyces griseoflavus Tu4000]
 gi|302476152|gb|EFL39245.1| secreted protein [Streptomyces griseoflavus Tu4000]
          Length = 408

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 31 AEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A    + E  + +++  L +AG+++  RG  
Sbjct: 58 ARRMDLPEGHVDRLVGRLSRAGLLDDSRGGG 88


>gi|254504530|ref|ZP_05116681.1| transcriptional regulator, GntR family protein [Labrenzia
          alexandrii DFL-11]
 gi|222440601|gb|EEE47280.1| transcriptional regulator, GntR family protein [Labrenzia
          alexandrii DFL-11]
          Length = 236

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-----RRGG 63
          +  +       +AE   IS   L K L  L + G++E ++G     R+GG
Sbjct: 31 LDGERLPPERDMAEELGISIGTLRKALADLTEKGLLERIQGSGNYIRQGG 80


>gi|209516298|ref|ZP_03265155.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209503234|gb|EEA03233.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 42

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISEL 39
           ++K  DY   + +  A   +       +AEA  I   
Sbjct: 3  RMSKLADYATVISITLARGPNAVKTARSLAEATGIPPP 40


>gi|254381587|ref|ZP_04996951.1| ArsR2 [Streptomyces sp. Mg1]
 gi|194340496|gb|EDX21462.1| ArsR2 [Streptomyces sp. Mg1]
          Length = 120

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 47 LRLFSLVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLSSER 93


>gi|169631935|ref|YP_001705584.1| ArsR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169243902|emb|CAM64930.1| Putative transcriptional regulator, ArsR family [Mycobacterium
          abscessus]
          Length = 127

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R+    A H      +  I+    +S+  +   L+ L  AG++ + R   
Sbjct: 43 LRLFSLIASHAGGEACVCDISPGIEVSQPTISHHLKVLRNAGLLASERRAS 93


>gi|192289584|ref|YP_001990189.1| IclR family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192283333|gb|ACE99713.1| transcriptional regulator, IclR family [Rhodopseudomonas
          palustris TIE-1]
          Length = 263

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          G+RV +        P  +S +A+AC +      +IL  L  AG V +
Sbjct: 25 GLRV-IEAFGAEKRPMTLSDVAKACGLPRATARRILLTLQSAGYVSS 70


>gi|116695780|ref|YP_841356.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113530279|emb|CAJ96626.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 252

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
             N  P  ++++AEA  I +     I+  L+  G + ++   R       P  +I   DV
Sbjct: 20  QANQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALY----PTRRI--YDV 73

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
            +   E     E                 T VL +  +A  + +
Sbjct: 74  ARDITEKDPFVE---------------RATPVLERLRDATRETV 102


>gi|111020209|ref|YP_703181.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819739|gb|ABG95023.1| transcriptional regulator, IclR family protein [Rhodococcus
          jostii RHA1]
          Length = 258

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPA 70
          ++           +S++A+   +    + ++++ LV  G V    T R       L    
Sbjct: 22 ILELMASAGGAIGVSELADRAGLPLPTIHRLIRTLVDRGYVRQLPTRR-----YALG--P 74

Query: 71 DQITILD 77
            I + D
Sbjct: 75 KLIRLGD 81


>gi|17986453|ref|NP_539087.1| GntR family transcriptional regulator / aminotransferase class-I
          [Brucella melitensis bv. 1 str. 16M]
 gi|17982050|gb|AAL51351.1| transcriptional regulator, gntr family / aminotransferase class-i
          [Brucella melitensis bv. 1 str. 16M]
          Length = 484

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 42 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 87


>gi|47221257|emb|CAG13193.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1704

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 5   KRTDY-GIRVLMYCAIHN---DYPNRISQIAEACCI--------SELFLFKILQPLVKAG 52
            +T Y  +R+++  AI          ++ I              +   + K L  L+  G
Sbjct: 409 TKTSYPTVRLMLLAAIKEMRTGKGTSVNAIFSYLHATYGYDFFKNRTHIRKTLAKLISEG 468

Query: 53  IVETVRGRR--GGVRLCRPADQ 72
           +VE V+GR   G  RL +   +
Sbjct: 469 LVEQVKGRGLAGSFRLGKNYKE 490


>gi|85711224|ref|ZP_01042284.1| probable transcriptional regulator, ArsR family protein
          [Idiomarina baltica OS145]
 gi|85695137|gb|EAQ33075.1| probable transcriptional regulator, ArsR family protein
          [Idiomarina baltica OS145]
          Length = 115

 Score = 34.2 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M L    D   R+L+   + ++    + +I +   I +  L + L  L +  +V T R
Sbjct: 32 MQLLSHPD---RLLI-LCLLSEKEYSVGEIEKQLDIHQPMLSQHLNRLRQQSLVATRR 85


>gi|332639099|ref|ZP_08417962.1| AraC-like transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 283

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           VLMY          + ++AE    +  +L +I + 
Sbjct: 176 VLMYIHKQYQTKISLREVAERFHYNPDYLSRIFKR 210


>gi|330889774|gb|EGH22435.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|330825445|ref|YP_004388748.1| GntR domain-containing protein [Alicycliphilus denitrificans K601]
 gi|329310817|gb|AEB85232.1| GntR domain protein [Alicycliphilus denitrificans K601]
          Length = 277

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR---------RGGVRL- 66
                D     S++     +S   + + L  L  AG+VET  G            G+ L 
Sbjct: 63  LLREGDKLPTESELVRDYDVSRTVVREALSKLQAAGLVETRHGIGTFVLPARDGAGLTLD 122

Query: 67  CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
            R   + ++ DV+   E    +    A                 LR AL AF   
Sbjct: 123 ARELSE-SV-DVLAVLELRISLETEAAGLAAQRRSSEH---LQALRDALQAFERH 172


>gi|327331184|gb|EGE72924.1| transcription regulator, GntR family [Propionibacterium acnes
          HL097PA1]
          Length = 241

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61


>gi|320532939|ref|ZP_08033700.1| transcriptional regulator, AraC family [Actinomyces sp. oral
          taxon 171 str. F0337]
 gi|320134848|gb|EFW27035.1| transcriptional regulator, AraC family [Actinomyces sp. oral
          taxon 171 str. F0337]
          Length = 275

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 12/42 (28%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
             D  +R   Y   H      I  ++     S   L ++  
Sbjct: 33 TSADLALRAARYLRTHFRERVTIGDLSACLAYSPSHLTRVFT 74


>gi|297182596|gb|ADI18755.1| biotin-(acetyl-CoA carboxylase) ligase [uncultured gamma
          proteobacterium HF4000_36I10]
          Length = 325

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L+       R+L   A  +   +   ++  A  +S   ++K LQ L   G+ VE+V+G
Sbjct: 1  MELS-------RLLAELA--DGGFHSGEELGVALGVSRTAIWKQLQKLDDVGLQVESVKG 51

Query: 60 RRGGVRL 66
          R  G RL
Sbjct: 52 R--GYRL 56


>gi|302872635|ref|YP_003841271.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          obsidiansis OB47]
 gi|302575494|gb|ADL43285.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          obsidiansis OB47]
          Length = 128

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N+    +  +++   I+   + K  Q L + G + ++ G+ 
Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72


>gi|299772035|ref|YP_003734061.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp.
          DR1]
 gi|298702123|gb|ADI92688.1| DNA-binding transcriptional repressor LldR [Acinetobacter sp.
          DR1]
          Length = 250

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1  MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +    ++ L+   +     D      Q+A +  +S   L + +Q L   G++ + 
Sbjct: 1  MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59

Query: 58 RG 59
          RG
Sbjct: 60 RG 61


>gi|260459265|ref|ZP_05807520.1| putative transcriptional regulator, Crp/Fnr family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034819|gb|EEW36075.1| putative transcriptional regulator, Crp/Fnr family [Mesorhizobium
           opportunistum WSM2075]
          Length = 247

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
               Q+A    +   +L +++  L   G++ET R R
Sbjct: 174 VTQEQLATMLGVGRSYLSRVIHELRHRGVIETRRSR 209


>gi|258650314|ref|YP_003199470.1| IclR family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258553539|gb|ACV76481.1| transcriptional regulator, IclR family [Nakamurella multipartita
          DSM 44233]
          Length = 268

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 18 AIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          A     P   +S++A A  ++     +IL  L + G V   R   GG  L 
Sbjct: 23 AFAPGRPVMSLSEVATATGLARPTARRILLTLSELGYV---RAAAGGFALT 70


>gi|222530211|ref|YP_002574093.1| GntR family transcriptional regulator [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222457058|gb|ACM61320.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 128

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N+    +  +++   I+   + K  Q L + G + ++ G+ 
Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72


>gi|188590809|ref|YP_001795409.1| IclR family transcriptional regulator [Cupriavidus taiwanensis
          LMG 19424]
 gi|170937703|emb|CAP62687.1| putative transcriptional regulator, IclR family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 264

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 12 RVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          RVL   A   H+  P  + ++     + +  L++ L  L + G V
Sbjct: 30 RVLFVLAALAHHGAPITVRELVARTGLPKSTLYRQLMLLKRWGFV 74


>gi|163761686|ref|ZP_02168755.1| transcriptional regulator (GntR family) protein [Hoeflea
          phototrophica DFL-43]
 gi|162281109|gb|EDQ31411.1| transcriptional regulator (GntR family) protein [Hoeflea
          phototrophica DFL-43]
          Length = 261

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ND     +++A    ++   +   +  L K GIV   +GR 
Sbjct: 34 QANDRLPPEAELAARFGVNRHTVRSAIAALEKEGIVRAEQGRG 76


>gi|52079721|ref|YP_078512.1| phage-like protein [Bacillus licheniformis ATCC 14580]
 gi|52785089|ref|YP_090918.1| XkdB [Bacillus licheniformis ATCC 14580]
 gi|319646476|ref|ZP_08000705.1| XkdB protein [Bacillus sp. BT1B_CT2]
 gi|52002932|gb|AAU22874.1| phage related protein [Bacillus licheniformis ATCC 14580]
 gi|52347591|gb|AAU40225.1| XkdB [Bacillus licheniformis ATCC 14580]
 gi|317391064|gb|EFV71862.1| XkdB protein [Bacillus sp. BT1B_CT2]
          Length = 276

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           + P + +++A    ++E  + + L  L + G +   R   G
Sbjct: 56 GNKPLKAAELALQFGVNEKTIRRWLALLERNGYIAVTRAPYG 97


>gi|56962419|ref|YP_174145.1| GntR family transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56908657|dbj|BAD63184.1| GntR family transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 250

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 1  MHLTKR-TDYGIRV-----LMYCAIHNDYPNRI-----SQIAEACCISELFLFKILQPLV 49
          M++ K+ TD  +       L+       YP +      +++ +   +S   +   LQ LV
Sbjct: 1  MNVNKKGTDQSLHAFVKQELVTAIQQGVYPVKSQLPTEAELCKMYDVSRTTIRNALQQLV 60

Query: 50 KAGIVETVRGRR 61
            G VE ++GR 
Sbjct: 61 IDGYVERIQGRG 72


>gi|54025318|ref|YP_119560.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54016826|dbj|BAD58196.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          A     P  ++++A    +      +ILQ LV+ G VE
Sbjct: 23 AFVGQRPLTLAELARRSNLPRSSAHRILQRLVELGWVE 60


>gi|86137946|ref|ZP_01056522.1| transcriptional regulator, AsnC family protein [Roseobacter sp.
          MED193]
 gi|85825538|gb|EAQ45737.1| transcriptional regulator, AsnC family protein [Roseobacter sp.
          MED193]
          Length = 165

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L +    +D    I  +AE   ++   L + L  L +AGI+   R
Sbjct: 22 RILRHM--QSDPEQSIPDLAERLGLTPSRLSRRLDKLREAGILLGQR 66


>gi|119025913|ref|YP_909758.1| transcriptional regulator [Bifidobacterium adolescentis ATCC
          15703]
 gi|118765497|dbj|BAF39676.1| transcriptional regulator [Bifidobacterium adolescentis ATCC
          15703]
          Length = 92

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R ++      D      ++AE   IS+  L   L  L  AG+V   R
Sbjct: 16 RRILELLRAGD--MTAGELAEHFDISKPSLSHHLATLRNAGLVTDER 60


>gi|332654407|ref|ZP_08420150.1| biotin-[acetyl-CoA-carboxylase] ligase [Ruminococcaceae bacterium
          D16]
 gi|332516371|gb|EGJ45977.1| biotin-[acetyl-CoA-carboxylase] ligase [Ruminococcaceae bacterium
          D16]
          Length = 335

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL       +       ++    IS   ++K ++ L + G  +++      G RL    D
Sbjct: 11 VLSLLLQQENQYVSGEAMSRTLGISRAAVWKAIEALRQEGYTIQSA--PNRGYRLDSAPD 68

Query: 72 QITILDVVKATEESFFVAECFASHKIDC 99
          +      V+  E S  +A C    K+ C
Sbjct: 69 R------VREGELSGPLAGCHLGGKLLC 90


>gi|332159085|ref|YP_004424364.1| hypothetical protein PNA2_1445 [Pyrococcus sp. NA2]
 gi|331034548|gb|AEC52360.1| hypothetical protein PNA2_1445 [Pyrococcus sp. NA2]
          Length = 272

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL+Y A       + ++I     I     ++IL+ L K G+V+
Sbjct: 210 VLLYIAEKGGRAKQ-AEIRNDLGIPRTTTWRILRRLEKEGLVK 251


>gi|328956497|ref|YP_004373883.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
 gi|328672821|gb|AEB28867.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
          Length = 782

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           R++         P  +S++AE   +S  +L +  + +   G +
Sbjct: 168 RIIQLIEQRYAEPLTLSELAEHENLSSSYLSRYFKQMTGMGFL 210


>gi|327311056|ref|YP_004337953.1| Riboflavin kinase [Thermoproteus uzoniensis 768-20]
 gi|326947535|gb|AEA12641.1| Riboflavin kinase [Thermoproteus uzoniensis 768-20]
          Length = 211

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          L+  A     P    + A+A  IS   L K L+ L  AG VE
Sbjct: 12 LIALAGVEGLPPS--EAAKALGISRQGLHKALRRLRAAGYVE 51


>gi|319651252|ref|ZP_08005382.1| manganese transport transcriptional regulator [Bacillus sp.
          2_A_57_CT2]
 gi|317397032|gb|EFV77740.1| manganese transport transcriptional regulator [Bacillus sp.
          2_A_57_CT2]
          Length = 141

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I +    R+S IAEA  +    + K++Q L K          G++ T +G++ G R
Sbjct: 13 IYMLIEDKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLILTPKGKKVGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|315648902|ref|ZP_07901996.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
 gi|315275583|gb|EFU38937.1| Helix-turn-helix type 11 domain protein [Paenibacillus vortex
          V453]
          Length = 177

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
           + ++AE   +S   + + L  L   G+ +    G+ GG 
Sbjct: 21 TVGELAEEFSVSYRTMLRYLHELSHLGVPLYAHEGKNGGY 60


>gi|306845868|ref|ZP_07478436.1| GntR family transcriptional regulator [Brucella sp. BO1]
 gi|306273760|gb|EFM55598.1| GntR family transcriptional regulator [Brucella sp. BO1]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95


>gi|317152421|ref|YP_004120469.1| AraC type helix-turn-helix- domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942672|gb|ADU61723.1| helix-turn-helix- domain containing protein AraC type
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 279

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
           + A   D    +  ++    IS   L ++     +AG+
Sbjct: 184 HLAARLDERVSLDDLSALVGISRYHLLRVFS--REAGL 219


>gi|262200255|ref|YP_003271463.1| IclR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262083602|gb|ACY19570.1| Transcriptional regulator IclR [Gordonia bronchialis DSM 43247]
          Length = 246

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67
           +RVL    + +     +S++A    IS+  +++I   L ++G++E    R+G G RL 
Sbjct: 10 AVRVLEEFTV-SQSTLGVSELARRTGISKSSVYRITGDLEQSGLLE----RQGTGYRLG 63


>gi|260554105|ref|ZP_05826367.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter sp. RUH2624]
 gi|260404783|gb|EEW98291.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter sp. RUH2624]
          Length = 250

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1  MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +    ++ L+   +     D      Q+A +  +S   L + +Q L   G++ + 
Sbjct: 1  MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLSSR 59

Query: 58 RG 59
          RG
Sbjct: 60 RG 61


>gi|259416317|ref|ZP_05740237.1| transcriptional regulator, GntR family [Silicibacter sp.
          TrichCH4B]
 gi|259347756|gb|EEW59533.1| transcriptional regulator, GntR family [Silicibacter sp.
          TrichCH4B]
          Length = 243

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     S++AE   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSESELAEQFQVSRATVREGLKRLAAQSLIRTQRGATGG 73


>gi|188591975|ref|YP_001796573.1| gntr family transcriptional regulator [Cupriavidus taiwanensis
          LMG 19424]
 gi|170938349|emb|CAP63334.1| putative TRANSCRIPTIONAL REGULATOR, GntR family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           D     S+I     +S   + + L  L  +G+VET  G  G   L RPA+
Sbjct: 47 GDKLPTESEIMATMGVSRTVVREALSRLQASGLVETRHGI-GTFVLERPAE 96


>gi|170078485|ref|YP_001735123.1| putative replicative DNA helicase [Synechococcus sp. PCC 7002]
 gi|169886154|gb|ACA99867.1| putative replicative DNA helicase [Synechococcus sp. PCC 7002]
          Length = 715

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           + + H         +AEA   +   + K+L  L   GI+
Sbjct: 488 FLSQHRGVKFGSRDLAEALNFNTNSVRKVLGQLAADGII 526


>gi|145294081|ref|YP_001136902.1| hypothetical protein cgR_0039 [Corynebacterium glutamicum R]
 gi|140844001|dbj|BAF53000.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 507

 Score = 34.2 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           AI+   P  I +IA     +   L  +L+ LV+AG+V   
Sbjct: 455 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 494


>gi|332796591|ref|YP_004458091.1| MarR family transcriptional regulator [Acidianus hospitalis W1]
 gi|332694326|gb|AEE93793.1| transcriptional regulator, MarR family [Acidianus hospitalis W1]
          Length = 84

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +   A   +    I ++AE   I +  + K ++ L   G VE
Sbjct: 1  MTNLA---EGELSIKELAEYTGIPKKNIIKAMKSLENRGYVE 39


>gi|323494912|ref|ZP_08100004.1| transcriptional regulatory protein PtsJ [Vibrio brasiliensis LMG
          20546]
 gi|323310876|gb|EGA64048.1| transcriptional regulatory protein PtsJ [Vibrio brasiliensis LMG
          20546]
          Length = 432

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 10 GIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           +R L+        D    + ++A    ++   +  + Q LVK+G+ ET +GR G
Sbjct: 16 SVRCLIASGELKEGDALPPVRELAAEVGVNRNTVAGVYQRLVKSGLAET-KGRLG 69


>gi|317401215|gb|EFV81859.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 239

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +AE   +S   + ++ + L   G++++ +G  G V L R   Q
Sbjct: 37 LAEQYGVSAAVIREVTERLRAQGLIQSRQG-SGCVVLARTGAQ 78


>gi|302547660|ref|ZP_07300002.1| ROK family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465278|gb|EFL28371.1| ROK family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 425

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGG 63
            +R ++   +  +  +R ++IA    ++   + + +  LV  GI+      E+VRGR   
Sbjct: 30  ALRSVLDLVVSGEATSR-AEIARRSGLARSTVGQQVDHLVGRGILQELGSSESVRGRP-- 86

Query: 64  VR---LCRPADQITILDVVKATEESFFVAE 90
            R   L   A  I + DV    E    +A+
Sbjct: 87  PRVLTLSPRAGTIAVADV-DTLESRVAIAD 115


>gi|300811558|ref|ZP_07092045.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
 gi|300497464|gb|EFK32499.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii
          subsp. bulgaricus PB2003/044-T3-4]
 gi|325685630|gb|EGD27715.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++    + ++A     +   + K    L + G V +V+GR 
Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72


>gi|289627240|ref|ZP_06460194.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650924|ref|ZP_06482267.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866949|gb|EGH01658.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|260906350|ref|ZP_05914672.1| GntR family transcriptional regulator [Brevibacterium linens BL2]
          Length = 473

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++A A  +S     +    L + G V T RG  
Sbjct: 41 REVAAATGLSRTTATRAFAKLREQGFVHTRRGSG 74


>gi|229819480|ref|YP_002881006.1| transcriptional regulator, GntR family [Beutenbergia cavernae DSM
          12333]
 gi|229565393|gb|ACQ79244.1| transcriptional regulator, GntR family [Beutenbergia cavernae DSM
          12333]
          Length = 131

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
             D    I ++ E   I+   + K  + L + G+V +  G  G   +  P + +
Sbjct: 32 RQGDQVPLIREVVEQLAINPNTVSKAYRQLEQEGLVRSRPGI-GTFVVGAPPEAV 85


>gi|213965640|ref|ZP_03393834.1| GntR family transcriptional regulator [Corynebacterium amycolatum
          SK46]
 gi|213951799|gb|EEB63187.1| GntR family transcriptional regulator [Corynebacterium amycolatum
          SK46]
          Length = 120

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            A  N  P    +++E   ++     K +  L   G+VE  RG
Sbjct: 27 ELAAENRAP-STKELSEFYQVNPTTAAKAMTELSMVGLVEKKRG 69


>gi|118443913|ref|YP_878800.1| GntR family transcriptional regulator [Clostridium novyi NT]
 gi|118134369|gb|ABK61413.1| transcription regulator, GntR family , putative [Clostridium
          novyi NT]
          Length = 242

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++E   +S   + + L  L + G +   RG+ 
Sbjct: 38 ELSEQYEVSRSTVRQTLSELERYGYIYKERGKG 70


>gi|117929011|ref|YP_873562.1| GntR family transcriptional regulator [Acidothermus
          cellulolyticus 11B]
 gi|117649474|gb|ABK53576.1| transcriptional regulator, GntR family [Acidothermus
          cellulolyticus 11B]
          Length = 246

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   + + +Q LV+ G++   RG  
Sbjct: 44 ELADRLGLSRPTMRRAIQELVRKGLLVRKRGVG 76


>gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 220

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y   +       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYVNRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|326779956|ref|ZP_08239221.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
 gi|326660289|gb|EGE45135.1| regulatory protein ArsR [Streptomyces cf. griseus XylebKG-1]
          Length = 146

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           IRVL      ++  + +S++     +    L + L  L +AG+V   R G      L  P
Sbjct: 36  IRVLELL---SEREHAVSEMLNEVGVEAAHLSQQLAVLRRAGLVTARREGSAVHYTLADP 92

Query: 70  ADQITILDVVKA 81
                + ++++ 
Sbjct: 93  G----VAELLRV 100


>gi|325001521|ref|ZP_08122633.1| DeoR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 392

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 30  IAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
           +AE   +    + + +  L   G  V +  G  GG RL 
Sbjct: 71  LAERLDVDVRTVRRDVDKLRTLGYPVHSTPGTTGGYRLG 109


>gi|323496311|ref|ZP_08101369.1| DeoR family transcriptional regulator [Vibrio sinaloensis DSM
          21326]
 gi|323318588|gb|EGA71541.1| DeoR family transcriptional regulator [Vibrio sinaloensis DSM
          21326]
          Length = 245

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 16/84 (19%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLCRPADQI--- 73
          ++       ++Q+A+    S+  + + +  L   G+V  +  GR GG++L      +   
Sbjct: 19 SLRRQGTTTVAQLAQDVGASKRTILRDISALRDEGVVIYSEPGRGGGLQL--DPRSVQTR 76

Query: 74 ---TILDVVKATEESFFVAECFAS 94
             ++ +V       F +  C AS
Sbjct: 77 VRLSVSEV-------FALVVCVAS 93


>gi|319784219|ref|YP_004143695.1| histidine utilization repressor [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317170107|gb|ADV13645.1| histidine utilization repressor [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          +++     S + + K L  L KAG++E  R R G     RP  Q  +L++
Sbjct: 42 ELSVQYNCSRMTVNKALSQLAKAGLIE-RRRRSGSFV-RRPQSQAAVLEI 89


>gi|307947018|ref|ZP_07662353.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770682|gb|EFO29908.1| AraC family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 329

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-LC-RPADQI------TI 75
           P  ++ IA    +S   L ++ +         T +   G  R L  + A QI      +I
Sbjct: 229 PVSVADIAGQVNLSPRHLERVFKH-------STGQNPSGYFRHLRMKAARQIIMYTNDSI 281

Query: 76  LDVVKAT 82
            DV  A 
Sbjct: 282 GDVAAAV 288


>gi|296534463|ref|ZP_06896894.1| IclR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296265212|gb|EFH11406.1| IclR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           IR+L + A     P  ++ +A    IS    F IL+ L +A  V
Sbjct: 24 AIRILRHLAGAT-APLGVAAVARGTGISPSTCFNILRTLARARFV 67


>gi|291452430|ref|ZP_06591820.1| ArsR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291355379|gb|EFE82281.1| ArsR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 131

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++ + R
Sbjct: 52 LRLLSMIASRAGGEVCVCDLTPAFALSQPTISHHLKLLRQAGLIASER 99


>gi|290962405|ref|YP_003493587.1| repressor of aceBA operon [Streptomyces scabiei 87.22]
 gi|260651931|emb|CBG75061.1| putative repressor of aceBA operon [Streptomyces scabiei 87.22]
          Length = 249

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          M +   T   +R+L   A H   P  + ++     + +  + + L  L +AG +   R
Sbjct: 1  MEMKSVTR-SLRILEAVARHQ--PVTVGELTRLFGLPKSTVQRTLVTLNEAGWLRANR 55


>gi|291455982|ref|ZP_06595372.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM
           20213]
 gi|291382391|gb|EFE89909.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM
           20213]
          Length = 291

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           R + Y   H D    +  IA+A CIS  +L ++   
Sbjct: 184 RAVAYVQEHADETLSVQMIADALCISRGYLHQLFIK 219


>gi|225420145|ref|ZP_03762448.1| hypothetical protein CLOSTASPAR_06488 [Clostridium asparagiforme
          DSM 15981]
 gi|225041202|gb|EEG51448.1| hypothetical protein CLOSTASPAR_06488 [Clostridium asparagiforme
          DSM 15981]
          Length = 245

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           D  +    +A    I+ + +   L+ L + G V+  RGR  G  + R  ++
Sbjct: 27 GDKLDSERVMAAQYGINRMTVRNALKALEEEGYVKAYRGR--GTFVARIPEE 76


>gi|194470914|ref|ZP_03076898.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205358623|ref|ZP_02657915.2| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194457278|gb|EDX46117.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333016|gb|EDZ19780.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 260

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      +IAE   ++   + + L  L   G+VE  RG             I +LD 
Sbjct: 31  RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 78

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136
                 S    E   +    C   G   L    R+ L +        Q + E +++ R +
Sbjct: 79  ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 131

Query: 137 IK 138
           ++
Sbjct: 132 LQ 133


>gi|239827566|ref|YP_002950190.1| GntR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239807859|gb|ACS24924.1| transcriptional regulator, GntR family [Geobacillus sp. WCH70]
          Length = 247

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   IS + + + +  LV  G +   RG+ 
Sbjct: 37 RELAETYDISRMTVRQAINNLVNDGYLVRKRGKG 70


>gi|167033319|ref|YP_001668550.1| GntR domain-containing protein [Pseudomonas putida GB-1]
 gi|166859807|gb|ABY98214.1| GntR domain protein [Pseudomonas putida GB-1]
          Length = 249

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     SQI     +S   + + +  L  AG VET  G           GG R+  PA
Sbjct: 36  RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 94

Query: 71  DQITILDVVKATEESFFV 88
             +T+ +V+   E    +
Sbjct: 95  TVVTLREVLAVLELRIAL 112


>gi|154252071|ref|YP_001412895.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
 gi|154156021|gb|ABS63238.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
          Length = 103

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ CA+       + ++A    +    L + L  L   G+V T R
Sbjct: 30 RLLVLCALAVKGEASVGELAAEADLGMSALSQHLAKLRADGLVATRR 76


>gi|186476527|ref|YP_001857997.1| IclR family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184192986|gb|ACC70951.1| transcriptional regulator, IclR family [Burkholderia phymatum
          STM815]
          Length = 278

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 30 GLTVLRRIAA-ADAPLSNRELTELTGIPKPTVSRITATLVSAGFL 73


>gi|115373427|ref|ZP_01460725.1| transcriptional regulator, GntR family [Stigmatella aurantiaca
          DW4/3-1]
 gi|310822550|ref|YP_003954908.1| GntR family transcriptional regulator [Stigmatella aurantiaca
          DW4/3-1]
 gi|115369593|gb|EAU68530.1| transcriptional regulator, GntR family [Stigmatella aurantiaca
          DW4/3-1]
 gi|309395622|gb|ADO73081.1| Transcriptional regulator, GntR family [Stigmatella aurantiaca
          DW4/3-1]
          Length = 260

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          H D      ++AE   +S + + K L+ L+  G+++  +G  
Sbjct: 43 HRDALPGERELAERFGVSRVTVRKALKELLDEGLLQQRQGAG 84


>gi|61102710|gb|AAX37827.1| pFQ25.11c [Streptomyces sp. F2]
          Length = 119

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 46 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 92


>gi|15897300|ref|NP_341905.1| hypothetical protein SSO0365 [Sulfolobus solfataricus P2]
 gi|13813509|gb|AAK40695.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 301

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD- 77
          +    P   +++++   +S+  L ++L  L K GIV+  +       L +   ++++   
Sbjct: 13 LKEKGPISQTELSKLSGLSKSRLSEVLSELEKQGIVKRRK------VLGKNL-EVSLSQD 65

Query: 78 ------VVKATEESFFV 88
                +++A E  F +
Sbjct: 66 RFLRLGIIRAAEYPFII 82


>gi|23500260|ref|NP_699700.1| GntR family transcriptional regulator [Brucella suis 1330]
 gi|62317623|ref|YP_223476.1| GntR family transcriptional regulator [Brucella abortus bv. 1
          str. 9-941]
 gi|83269606|ref|YP_418897.1| GntR family regulatory protein [Brucella melitensis biovar
          Abortus 2308]
 gi|148558784|ref|YP_001257482.1| GntR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|161620577|ref|YP_001594463.1| GntR family transcriptional regulator [Brucella canis ATCC 23365]
 gi|189022875|ref|YP_001932616.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 gi|254691120|ref|ZP_05154374.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6
          str. 870]
 gi|254695574|ref|ZP_05157402.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 3
          str. Tulya]
 gi|254698904|ref|ZP_05160732.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254699762|ref|ZP_05161590.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 5
          str. 513]
 gi|254702895|ref|ZP_05164723.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 3
          str. 686]
 gi|254705983|ref|ZP_05167811.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          M163/99/10]
 gi|254711718|ref|ZP_05173529.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          B2/94]
 gi|254712333|ref|ZP_05174144.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M644/93/1]
 gi|254715404|ref|ZP_05177215.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M13/05/1]
 gi|254720473|ref|ZP_05182284.1| Bacterial regulatory protein, GntR family [Brucella sp. 83/13]
 gi|254732351|ref|ZP_05190929.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4
          str. 292]
 gi|256015293|ref|YP_003105302.1| transcriptional regulator, GntR family [Brucella microti CCM
          4915]
 gi|256029649|ref|ZP_05443263.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          M292/94/1]
 gi|256059284|ref|ZP_05449486.1| Bacterial regulatory protein, GntR family [Brucella neotomae
          5K33]
 gi|256256307|ref|ZP_05461843.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9
          str. C68]
 gi|260167263|ref|ZP_05754074.1| transcriptional regulator, GntR family protein [Brucella sp.
          F5/99]
 gi|260544857|ref|ZP_05820678.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260568190|ref|ZP_05838659.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260756719|ref|ZP_05869067.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260760149|ref|ZP_05872497.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260763387|ref|ZP_05875719.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882534|ref|ZP_05894148.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|261215969|ref|ZP_05930250.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261217134|ref|ZP_05931415.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261313417|ref|ZP_05952614.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261319345|ref|ZP_05958542.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261320005|ref|ZP_05959202.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261323238|ref|ZP_05962435.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261750228|ref|ZP_05993937.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261753500|ref|ZP_05997209.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|261756669|ref|ZP_06000378.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265985500|ref|ZP_06098235.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265986654|ref|ZP_06099211.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|294853683|ref|ZP_06794355.1| GntR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|297249665|ref|ZP_06933366.1| GntR family transcriptional regulator [Brucella abortus bv. 5
          str. B3196]
 gi|306839663|ref|ZP_07472466.1| GntR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306840573|ref|ZP_07473329.1| GntR family transcriptional regulator [Brucella sp. BO2]
 gi|23463867|gb|AAN33705.1| transcriptional regulator, GntR family [Brucella suis 1330]
 gi|62197816|gb|AAX76115.1| transcriptional regulator, GntR family [Brucella abortus bv. 1
          str. 9-941]
 gi|82939880|emb|CAJ12891.1| Bacterial regulatory protein, GntR family:Bacterial regulatory
          protein, DeoR family [Brucella melitensis biovar
          Abortus 2308]
 gi|148370069|gb|ABQ62941.1| transcriptional regulator, GntR family [Brucella ovis ATCC 25840]
 gi|161337388|gb|ABX63692.1| transcriptional regulator, GntR family [Brucella canis ATCC
          23365]
 gi|189021449|gb|ACD74170.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 gi|255997953|gb|ACU49640.1| transcriptional regulator, GntR family [Brucella microti CCM
          4915]
 gi|260098128|gb|EEW82002.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260154855|gb|EEW89936.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260670467|gb|EEX57407.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673808|gb|EEX60629.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676827|gb|EEX63648.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260872062|gb|EEX79131.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|260917576|gb|EEX84437.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260922223|gb|EEX88791.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292695|gb|EEX96191.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298568|gb|EEY02065.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261299218|gb|EEY02715.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261302443|gb|EEY05940.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261736653|gb|EEY24649.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261739981|gb|EEY27907.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261743253|gb|EEY31179.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|264658851|gb|EEZ29112.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264664092|gb|EEZ34353.1| transcriptional regulator [Brucella sp. 83/13]
 gi|294819338|gb|EFG36338.1| GntR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|297173534|gb|EFH32898.1| GntR family transcriptional regulator [Brucella abortus bv. 5
          str. B3196]
 gi|306289440|gb|EFM60667.1| GntR family transcriptional regulator [Brucella sp. BO2]
 gi|306405243|gb|EFM61519.1| GntR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 95


>gi|107022276|ref|YP_620603.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          AU 1054]
 gi|105892465|gb|ABF75630.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          AU 1054]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|299144189|ref|ZP_07037269.1| transcriptional regulator, DeoR family [Peptoniphilus sp. oral
          taxon 386 str. F0131]
 gi|298518674|gb|EFI42413.1| transcriptional regulator, DeoR family [Peptoniphilus sp. oral
          taxon 386 str. F0131]
          Length = 299

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y           S +A+   +S   +++ +  +  AGI +   +G+ GG+ +   
Sbjct: 7  FRILYYI--LEKGKVTASDLADKFEVSVRTIYRDIDSISSAGIPIYATQGKGGGIEIAED 64


>gi|291452184|ref|ZP_06591574.1| regulatory protein [Streptomyces albus J1074]
 gi|291355133|gb|EFE82035.1| regulatory protein [Streptomyces albus J1074]
          Length = 327

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +R L             SQ+A    +S     +    L ++G++ T R
Sbjct: 250 ALRALT-------STCTTSQLAARLGVSPGSASQHASILRESGLITTRR 291


>gi|270261356|ref|ZP_06189629.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044840|gb|EFA17931.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 156

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
              R + IA    +S     K +  L  AG+VE+      GV L    +Q
Sbjct: 54  REARTTDIARRFGVSHPTAIKNIARLKSAGLVESR--PYRGVFLTEEGEQ 101


>gi|259418171|ref|ZP_05742090.1| transcriptional regulator, GntR family [Silicibacter sp.
          TrichCH4B]
 gi|259347077|gb|EEW58891.1| transcriptional regulator, GntR family [Silicibacter sp.
          TrichCH4B]
          Length = 273

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      ++AE   +S   L   L  L   G++ +  G  
Sbjct: 29 RPGERLPSERELAERLGVSRPSLRDALAELQDRGLLSSRAGSG 71


>gi|220911733|ref|YP_002487042.1| GntR family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858611|gb|ACL38953.1| transcriptional regulator, GntR family [Arthrobacter
          chlorophenolicus A6]
          Length = 246

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 15 MYCAIHNDYPNRIS------QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  AIH+      S       +A    +S   + K +  LV++G++   RG  
Sbjct: 25 IEAAIHSGVLEPGSRLDNEIDLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77


>gi|157694167|ref|YP_001488629.1| Lrp/Asn family transcriptional regulator [Bacillus pumilus
          SAFR-032]
 gi|157682925|gb|ABV64069.1| Lrp/Asn family transcriptional regulator [Bacillus pumilus
          SAFR-032]
          Length = 181

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M +T   D  + +L       D    + ++++   +S   + + ++ L  AGI+E
Sbjct: 23 MKIT---DVDVHILNEL--KEDARLSMRELSKRVNLSAPAVAERVRKLEDAGIIE 72


>gi|254252768|ref|ZP_04946086.1| regulatory proteins [Burkholderia dolosa AUO158]
 gi|124895377|gb|EAY69257.1| regulatory proteins [Burkholderia dolosa AUO158]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|119960863|ref|YP_947143.1| ArsR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119947722|gb|ABM06633.1| transcriptional regulator, ArsR family [Arthrobacter aurescens TC1]
          Length = 108

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 9   YGI------RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
           Y +      R+L+  +  + YP   S +A++  +S   +   L  L   G+V  V  GRR
Sbjct: 15  YAVSDATRARILLALSDASSYP---SDLADSLGVSRQSMSNHLTCLRGCGLVVAVPVGRR 71

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
               L        +   +K         +        C   G C
Sbjct: 72  SRYELA----DARLGHAIKDLIGVVLAVD-----PACCAPDGEC 106


>gi|170732523|ref|YP_001764470.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|254245843|ref|ZP_04939164.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184]
 gi|124870619|gb|EAY62335.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184]
 gi|169815765|gb|ACA90348.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          MC0-3]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|116255409|ref|YP_771242.1| GntR family transcriptional regulator [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115260057|emb|CAK03156.1| putative GntR family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 239

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A     S + + K+L  L KAG++E  R ++ G  + +P  Q  IL++
Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAILEI 84


>gi|96771819|emb|CAI78401.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
          23877]
 gi|114050263|emb|CAK51298.1| putative transcriptional regulator [Streptomyces ambofaciens]
 gi|117164364|emb|CAJ87906.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
          23877]
          Length = 154

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          L+  A  +  P  I ++A++   S   + + +  + K  +V +  G 
Sbjct: 39 LIRLA--HTGPLTIRELAKSLDRSHSAISQTVAAMRKEDLVTSEPGP 83


>gi|148548312|ref|YP_001268414.1| GntR domain-containing protein [Pseudomonas putida F1]
 gi|148512370|gb|ABQ79230.1| transcriptional regulator, GntR family [Pseudomonas putida F1]
 gi|313498460|gb|ADR59826.1| GntR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 249

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     SQI     +S   + + +  L  AG VET  G           GG R+  PA
Sbjct: 36  RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 94

Query: 71  DQITILDVVKATEESFFV 88
             +T+ +V+   E    +
Sbjct: 95  TVVTLREVLAVLELRIAL 112


>gi|158313829|ref|YP_001506337.1| GntR domain-containing protein [Frankia sp. EAN1pec]
 gi|158109234|gb|ABW11431.1| GntR domain protein [Frankia sp. EAN1pec]
          Length = 268

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++++    +S   + + L+ L    +VET RG  GG  +  P
Sbjct: 37 AELSTMFGVSRSTVREALRLLSSQHLVETRRGVHGGTFVAAP 78


>gi|134295225|ref|YP_001118960.1| IclR family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134138382|gb|ABO54125.1| transcriptional regulator, IclR family [Burkholderia
          vietnamiensis G4]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|333023164|ref|ZP_08451228.1| putative DeoR family transcriptional regulator [Streptomyces sp.
          Tu6071]
 gi|332743016|gb|EGJ73457.1| putative DeoR family transcriptional regulator [Streptomyces sp.
          Tu6071]
          Length = 282

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R L+   +  +    + QI +   +S + + + +  L + G+V +V    GGVR+  P
Sbjct: 15 RELLVRHLRREGVLSVQQITQLFGVSHMTVRRDIAELERQGLVFSVP---GGVRIASP 69


>gi|332297316|ref|YP_004439238.1| transcriptional regulator, GntR family [Treponema brennaborense
          DSM 12168]
 gi|332180419|gb|AEE16107.1| transcriptional regulator, GntR family [Treponema brennaborense
          DSM 12168]
          Length = 129

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + ++AE+  ++   + +  Q L + G+ ET RG  
Sbjct: 27 APGDKLPSVRELAESIKVNPNTIVRSYQELEREGVTETRRGTG 69


>gi|315644766|ref|ZP_07897895.1| xylan 1,4-beta-xylosidase [Paenibacillus vortex V453]
 gi|315279708|gb|EFU43009.1| xylan 1,4-beta-xylosidase [Paenibacillus vortex V453]
          Length = 845

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58
           +R++ Y   H      +  +AE   +S  +L K       L     + ++R
Sbjct: 175 LRIITYIDEHYRDAISLQSLAEREFLSVPYLSKFFSENIGLNFQSYLTSIR 225


>gi|306838951|ref|ZP_07471775.1| transcriptional regulator GntR family protein [Brucella sp. NF
           2653]
 gi|306405954|gb|EFM62209.1| transcriptional regulator GntR family protein [Brucella sp. NF
           2653]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|299134467|ref|ZP_07027660.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2]
 gi|298591214|gb|EFI51416.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2]
          Length = 268

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 19/35 (54%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +D P  +S++     I +  + +IL  L +A +++
Sbjct: 40 SDLPVSLSEVTARLGIPKPSVHRILAQLEQAHLIK 74


>gi|260906387|ref|ZP_05914709.1| transcriptional regulator, MarR family protein [Brevibacterium
           linens BL2]
          Length = 171

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           M L +     IR+LM  A           IA    IS     K++  LV AG +
Sbjct: 49  MRLNESDMRAIRMLMQ-AQKQGQIITPRDIASEVGISSASTTKLIDRLVAAGHL 101


>gi|256059870|ref|ZP_05450057.1| transcriptional regulator GntR family protein [Brucella neotomae
          5K33]
 gi|256158396|ref|ZP_05456294.1| transcriptional regulator GntR family protein [Brucella ceti
          M490/95/1]
 gi|256253815|ref|ZP_05459351.1| transcriptional regulator GntR family protein [Brucella ceti
          B1/94]
 gi|261217723|ref|ZP_05932004.1| GntR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261220948|ref|ZP_05935229.1| GntR family transcriptional regulator [Brucella ceti B1/94]
 gi|261315063|ref|ZP_05954260.1| GntR family transcriptional regulator [Brucella pinnipedialis
          M163/99/10]
 gi|261316380|ref|ZP_05955577.1| GntR family transcriptional regulator [Brucella pinnipedialis
          B2/94]
 gi|261321429|ref|ZP_05960626.1| GntR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|261323841|ref|ZP_05963038.1| GntR family transcriptional regulator [Brucella neotomae 5K33]
 gi|261751042|ref|ZP_05994751.1| GntR family transcriptional regulator [Brucella suis bv. 5 str.
          513]
 gi|261758835|ref|ZP_06002544.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265987452|ref|ZP_06100009.1| GntR family transcriptional regulator [Brucella pinnipedialis
          M292/94/1]
 gi|265996908|ref|ZP_06109465.1| GntR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919532|gb|EEX86185.1| GntR family transcriptional regulator [Brucella ceti B1/94]
 gi|260922812|gb|EEX89380.1| GntR family transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294119|gb|EEX97615.1| GntR family transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295603|gb|EEX99099.1| GntR family transcriptional regulator [Brucella pinnipedialis
          B2/94]
 gi|261299821|gb|EEY03318.1| GntR family transcriptional regulator [Brucella neotomae 5K33]
 gi|261304089|gb|EEY07586.1| GntR family transcriptional regulator [Brucella pinnipedialis
          M163/99/10]
 gi|261738819|gb|EEY26815.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261740795|gb|EEY28721.1| GntR family transcriptional regulator [Brucella suis bv. 5 str.
          513]
 gi|262551376|gb|EEZ07366.1| GntR family transcriptional regulator [Brucella ceti M490/95/1]
 gi|264659649|gb|EEZ29910.1| GntR family transcriptional regulator [Brucella pinnipedialis
          M292/94/1]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|254717961|ref|ZP_05179772.1| transcriptional regulator GntR family protein [Brucella sp.
          83/13]
 gi|265982904|ref|ZP_06095639.1| GntR family transcriptional regulator [Brucella sp. 83/13]
 gi|264661496|gb|EEZ31757.1| GntR family transcriptional regulator [Brucella sp. 83/13]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|291299465|ref|YP_003510743.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290568685|gb|ADD41650.1| transcriptional regulator, ArsR family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 108

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +R++   A        +S++A    +S   L+  L+ L KAGIV
Sbjct: 19 LRIIAELA---GGRVHVSELARRLGLSRPLLYMHLERLEKAGIV 59


>gi|228997577|ref|ZP_04157190.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus mycoides Rock3-17]
 gi|228762205|gb|EEM11138.1| Transcriptional regulator, GntR family with aminotransferase
          domain [Bacillus mycoides Rock3-17]
          Length = 503

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +H D    +  IA+   IS L + K  + L   G V+  +G+ 
Sbjct: 46 LHGDSLPSLRTIADDLKISILTVRKAYKQLEIKGYVQIKQGKG 88


>gi|228475432|ref|ZP_04060150.1| transcriptional regulator, DeoR family [Staphylococcus hominis
          SK119]
 gi|228270214|gb|EEK11649.1| transcriptional regulator, DeoR family [Staphylococcus hominis
          SK119]
          Length = 320

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +D      QI++   ++   +++ +  L K+G+ + +  G  GG  L
Sbjct: 14 LSSDKKVTAKQISDKLEMNIRTVYRYMDTLSKSGVPIISDTGHNGGYTL 62


>gi|225628095|ref|ZP_03786130.1| GntR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|254700538|ref|ZP_05162366.1| transcriptional regulator GntR family protein [Brucella suis bv. 5
           str. 513]
 gi|254707576|ref|ZP_05169404.1| transcriptional regulator GntR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254708887|ref|ZP_05170698.1| transcriptional regulator GntR family protein [Brucella
           pinnipedialis B2/94]
 gi|254713689|ref|ZP_05175500.1| transcriptional regulator GntR family protein [Brucella ceti
           M644/93/1]
 gi|254715960|ref|ZP_05177771.1| transcriptional regulator GntR family protein [Brucella ceti
           M13/05/1]
 gi|256030413|ref|ZP_05444027.1| transcriptional regulator GntR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256370295|ref|YP_003107806.1| transcriptional regulator, GntR family [Brucella microti CCM 4915]
 gi|260169322|ref|ZP_05756133.1| transcriptional regulator, GntR family protein [Brucella sp. F5/99]
 gi|225616920|gb|EEH13967.1| GntR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|256000458|gb|ACU48857.1| transcriptional regulator, GntR family [Brucella microti CCM 4915]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|163796976|ref|ZP_02190932.1| transcriptional regulator, ArsR family protein [alpha
          proteobacterium BAL199]
 gi|159177723|gb|EDP62274.1| transcriptional regulator, ArsR family protein [alpha
          proteobacterium BAL199]
          Length = 111

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          L++ T   +      A       R   IA+   +    L   L  L ++G+V++ R GR 
Sbjct: 13 LSQPTR--LEAFRLLAQAGPDGLRAGAIADHLGVVASTLSHHLSQLEQSGLVQSRRQGRH 70


>gi|134096899|ref|YP_001102560.1| MarR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291006659|ref|ZP_06564632.1| MarR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133909522|emb|CAL99634.1| MarR-family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 163

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           H D P   +++A    +S   + K L  L K G++ 
Sbjct: 62 RHADEPVTAARLAARLGMSRAGISKTLAKLEKRGLIT 98


>gi|26990314|ref|NP_745739.1| GntR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24985269|gb|AAN69203.1|AE016555_1 transcriptional regulator, GntR family [Pseudomonas putida KT2440]
          Length = 254

 Score = 34.2 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     SQI     +S   + + +  L  AG VET  G           GG R+  PA
Sbjct: 41  RGDKLPTESQIMAEEGVSRTVVREAISRLQAAGQVETRHGIGTFVLDAPATGGFRI-DPA 99

Query: 71  DQITILDVVKATEESFFV 88
             +T+ +V+   E    +
Sbjct: 100 TVVTLREVLAVLELRIAL 117


>gi|325662133|ref|ZP_08150751.1| hypothetical protein HMPREF0490_01489 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331085930|ref|ZP_08335013.1| hypothetical protein HMPREF0987_01316 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471582|gb|EGC74802.1| hypothetical protein HMPREF0490_01489 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330406853|gb|EGG86358.1| hypothetical protein HMPREF0987_01316 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 122

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             D    +  +A    ++   + K L  L ++G+V + R
Sbjct: 29 QPGDKLPSVRDLALEAAVNPNTMQKALSELERSGLVYSQR 68


>gi|320323679|gb|EFW79763.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328317|gb|EFW84321.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|293396037|ref|ZP_06640318.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421535|gb|EFE94783.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 433

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             D    + Q+A+   ++   +      L  AG+V T RGR G V L +P
Sbjct: 28 QAGDLLPPVRQLAQQLGVNPNTVASGYGKLRDAGLVAT-RGRAGTVVLEQP 77


>gi|290960739|ref|YP_003491921.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260650265|emb|CBG73381.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 12 RVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          R L  +   +  D       I     +    + +++  L   G +  V+G+ G  RL   
Sbjct: 10 RALDILELFLDGDGTLSAPDIVRRLQLPRTTVHELVTTLAARGYIVQVQGQPGRYRLGVR 69

Query: 70 A 70
           
Sbjct: 70 P 70


>gi|257440292|ref|ZP_05616047.1| methylphosphotriester-DNA alkyltransferase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197326|gb|EEU95610.1| methylphosphotriester-DNA alkyltransferase [Faecalibacterium
           prausnitzii A2-165]
          Length = 271

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           Y A +      ++ +A    +S  +L ++ + +    IV+ + GRR
Sbjct: 175 YLAANYQQKFSLTDVAARFYLSPYYLSRLFRRVTGQSIVDYINGRR 220


>gi|256377030|ref|YP_003100690.1| DeoR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921333|gb|ACU36844.1| regulatory protein DeoR [Actinosynnema mirum DSM 43827]
          Length = 362

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +  D   R+ ++A    +S + + + +  L + G+V   R   GG  L  PA
Sbjct: 14 LRRDGVVRVHELAVRLGVSAITVRRDITRLAREGVV---RRVHGGATLELPA 62


>gi|221214019|ref|ZP_03586992.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
 gi|221166196|gb|EED98669.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|170690305|ref|ZP_02881472.1| transcriptional regulator, GntR family [Burkholderia graminis
          C4D1M]
 gi|170144740|gb|EDT12901.1| transcriptional regulator, GntR family [Burkholderia graminis
          C4D1M]
          Length = 230

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 12 RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          RVL+      ++         +IAE   +S   + +  + L K G+VE   GR 
Sbjct: 20 RVLLDAISEGSLAPGTRIVQEEIAEQLAVSRSPVLQAFRLLKKDGLVEDAPGRG 73


>gi|170702197|ref|ZP_02893102.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          IOP40-10]
 gi|170132883|gb|EDT01306.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          IOP40-10]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 15 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 64


>gi|126666829|ref|ZP_01737806.1| biotin--protein ligase [Marinobacter sp. ELB17]
 gi|126628874|gb|EAZ99494.1| biotin--protein ligase [Marinobacter sp. ELB17]
          Length = 321

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD----QI 73
          +++   +    +A    +S   ++KI++  +K G  +++VRG   G +L  P D    +I
Sbjct: 10 LNDGKIHSGQSLATEFGVSRTAIWKIVRRALKEGFNIQSVRGH--GYQLASPVDFLDQEI 67

Query: 74 TILDVVKA 81
           + +V  A
Sbjct: 68 IVKNVASA 75


>gi|56696786|ref|YP_167147.1| GntR family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678523|gb|AAV95189.1| transcriptional regulator, GntR family [Ruegeria pomeroyi DSS-3]
          Length = 243

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------PADQIT 74
           ++     +++A+   +S   + + L+ L    ++ T RG  GG  + R       A QIT
Sbjct: 31  DERLPSEAELADQFKVSRPTVREALKRLAAQSLIRTQRGAFGGAFVNRLSFEDAQAQQIT 90

Query: 75  ILDVVKATEESFFVAECFAS 94
              ++ +     F   C A 
Sbjct: 91  TSTLLLSMNAVSFDTACEAR 110


>gi|116514608|ref|YP_813514.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116093923|gb|ABJ59076.1| transcriptional regulator, GntR family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++    + ++A     +   + K    L + G V +V+GR 
Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72


>gi|89894523|ref|YP_518010.1| hypothetical protein DSY1777 [Desulfitobacterium hafniense Y51]
 gi|219668954|ref|YP_002459389.1| GntR family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89333971|dbj|BAE83566.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539214|gb|ACL20953.1| transcriptional regulator, GntR family [Desulfitobacterium
          hafniense DCB-2]
          Length = 259

 Score = 34.2 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +     ++IA    IS + + + +  L+ AG+V   +G+ 
Sbjct: 35 GEALPTETEIANRFEISRMTVRRAIAELITAGMVHAQQGKG 75


>gi|325518223|gb|EGC97984.1| GntR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 247

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A+         + + E   +S   + K ++ LV  G+VE  RG+ 
Sbjct: 26 ALPPGSQLPAEERLIERFGVSRTTVRKAVENLVARGLVEIRRGKG 70


>gi|315186174|gb|EFU19936.1| regulatory protein MarR [Spirochaeta thermophila DSM 6578]
          Length = 407

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGG---VRLCRPADQITILDVV 79
          S+IAE   + +  + KI+  L + G+V        G RGG   + L       +   V+
Sbjct: 28 SEIAEDLGLDKSTVTKIVASLEQMGLVVPREEGPSGPRGGRKPIYLGINP---SFGMVL 83


>gi|313812472|gb|EFS50186.1| putative histidine utilization repressor [Propionibacterium acnes
          HL025PA1]
          Length = 238

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 18 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 58


>gi|309777871|ref|ZP_07672816.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308914355|gb|EFP60150.1| transcriptional regulator, GntR family [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ND    +  +A    ++   + K  Q L + G + + +G+ 
Sbjct: 32 NDKLPSVRAMASQIGVNPNTVAKAYQELEEQGYIYSEKGKG 72


>gi|307719406|ref|YP_003874938.1| transcriptional repressor [Spirochaeta thermophila DSM 6192]
 gi|306533131|gb|ADN02665.1| putative transcriptional repressor [Spirochaeta thermophila DSM
          6192]
          Length = 392

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVR----GRRGG---VRLCRPADQITILDVV 79
          S+IAE   + +  + KI+  L + G+V        G RGG   + L       +   V+
Sbjct: 28 SEIAEDLGLDKSTVTKIVASLEQMGLVVPREEGPSGPRGGRKPIYLGINP---SFGMVL 83


>gi|301312283|ref|ZP_07218200.1| putative transcriptional regulator [Bacteroides sp. 20_3]
 gi|300829705|gb|EFK60358.1| putative transcriptional regulator [Bacteroides sp. 20_3]
          Length = 443

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            +A    ++E ++ K+++ L + G +E +  R+ G  
Sbjct: 401 DLANRLDLTEQYIRKLIKKLKEHGWIERIGARKNGYW 437


>gi|326778903|ref|ZP_08238168.1| hypothetical protein SACT1_4760 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659236|gb|EGE44082.1| hypothetical protein SACT1_4760 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L+  A   D     S IA     S   +   L+ L  AG+VE VR
Sbjct: 189 RRLLELA---DGVRTASDIARTLGRSAFHVLVDLRRLAAAGLVEAVR 232


>gi|296269722|ref|YP_003652354.1| IclR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092509|gb|ADG88461.1| transcriptional regulator, IclR family [Thermobispora bispora DSM
          43833]
          Length = 247

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +  L+      + P    ++A A  +     + +L+ LV  G + 
Sbjct: 14 ALH-LLDAVASGERPATAKELARAVGLPLPTTYHLLRTLVHEGYLR 58


>gi|255305467|ref|ZP_05349639.1| GntR family transcriptional regulator [Clostridium difficile ATCC
           43255]
          Length = 489

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            Q+A    +S   + K L  L + G+++T+ G+ 
Sbjct: 283 KQLANQYGVSVSTIRKALAELEQRGLIKTLNGKG 316


>gi|147678275|ref|YP_001212490.1| Mn-dependent transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
 gi|146274372|dbj|BAF60121.1| Mn-dependent transcriptional regulator [Pelotomaculum
           thermopropionicum SI]
          Length = 156

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ- 72
           ++Y    +    RI+ +A A  +      K++Q L +AG V   R   G + L +  ++ 
Sbjct: 29  MIYRLSKDTGFTRINDLAAALNVQPPSATKMVQKLAEAGYVNYER--YGIILLSKNGEKR 86

Query: 73  -ITILDVVKATEESFFV 88
             T+L+  +  E+   +
Sbjct: 87  GRTLLERHRVVEDFLNL 103


>gi|104774497|ref|YP_619477.1| GntR family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|103423578|emb|CAI98504.1| Transcriptional regulator (GntR family) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++    + ++A     +   + K    L + G V +V+GR 
Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72


>gi|66043762|ref|YP_233603.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254469|gb|AAY35565.1| regulatory protein, GntR:Bacterial regulatory protein, GntR
           [Pseudomonas syringae pv. syringae B728a]
          Length = 249

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R+L+   +        + +AE+  IS   L +  + L + G++        GV + +  D
Sbjct: 50  RMLVEGELVPGQRLSEAALAESLDISRNTLREAFRVLTREGLLTHE--PNRGVTVAK-PD 106

Query: 72  QITILDVVKA 81
             +I+D+ + 
Sbjct: 107 MASIIDIYRI 116


>gi|83944122|ref|ZP_00956578.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
          EE-36]
 gi|83844989|gb|EAP82870.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
          EE-36]
          Length = 230

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       ++E   +S   L + L+ L + G+V + +G  
Sbjct: 30 GDKLPTEHAMSEMLEVSRPVLRQALKQLREDGVVVSRQGSG 70


>gi|319745794|gb|EFV98088.1| cyclic nucleotide-binding domain protein [Streptococcus agalactiae
           ATCC 13813]
          Length = 228

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 19/29 (65%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVE 55
           +S +A++  +S   L +++  +VK G+++
Sbjct: 179 LSSLADSFGVSYRHLLRVIHDMVKEGLIQ 207


>gi|315424934|dbj|BAJ46610.1| hypothetical protein HGMM_F01H02C17 [Candidatus Caldiarchaeum
          subterraneum]
          Length = 102

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGR 60
          R ++     ++       I+ A  IS +   +I+  L +  +VE T RGR
Sbjct: 41 RAVVDLLRRSNGVVEQRDISRALGISRIKTHRIVASLRRREVVEVTRRGR 90


>gi|315646796|ref|ZP_07899911.1| transcriptional regulator, Crp/Fnr family protein [Paenibacillus
           vortex V453]
 gi|315277726|gb|EFU41050.1| transcriptional regulator, Crp/Fnr family protein [Paenibacillus
           vortex V453]
          Length = 233

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 26  RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
            ++ IA     S   L +++    + G++E  +G      L +  + +TI
Sbjct: 179 NLTDIANLLGTSYRHLNRVILKFSQEGLIERRKG----FILIKNREALTI 224


>gi|312126765|ref|YP_003991639.1| GntR family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776784|gb|ADQ06270.1| transcriptional regulator, GntR family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 128

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N+    +  +++   I+   + K  Q L + G + ++ G+ 
Sbjct: 31 ENEQLPSVRSLSKELTINPNTIQKAYQELEREGYIYSIPGKG 72


>gi|315502583|ref|YP_004081470.1| transcriptional regulator, gntr family with aminotransferase
          domain protein [Micromonospora sp. L5]
 gi|315409202|gb|ADU07319.1| transcriptional regulator, GntR family with aminotransferase
          domain protein [Micromonospora sp. L5]
          Length = 445

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          ++   + GIR     A   D    +  +A    +S   + K  Q L + G+V T  GR G
Sbjct: 15 ISASVESGIRT-GDLA-PGDALPAVRALAAELDVSPATVAKAYQELRQRGLVATA-GRHG 71

Query: 63 GVRLCRPA 70
               RP 
Sbjct: 72 TRVRPRPP 79


>gi|238064370|ref|ZP_04609079.1| ArsR family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237886181|gb|EEP75009.1| ArsR family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 113

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           A+       ++ +A+   +S+    K L+ L + G+V  VRG  
Sbjct: 23 LALLRAGERPVTDLAQELGMSQPQASKHLRVLREVGLVR-VRGAG 66


>gi|256374564|ref|YP_003098224.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255918867|gb|ACU34378.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
          43827]
          Length = 139

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +  L   A     P R+  +A    ++   L +I+  LV+AG V 
Sbjct: 34 AVSALATLARCG--PMRLGDLANKEGVAPPTLSRIVATLVEAGYVR 77


>gi|225628946|ref|ZP_03786980.1| transcriptional regulator, GntR family protein [Brucella ceti
          str. Cudo]
 gi|237817172|ref|ZP_04596164.1| transcriptional regulator, GntR family [Brucella abortus str.
          2308 A]
 gi|225616792|gb|EEH13840.1| transcriptional regulator, GntR family protein [Brucella ceti
          str. Cudo]
 gi|237787985|gb|EEP62201.1| transcriptional regulator, GntR family [Brucella abortus str.
          2308 A]
          Length = 259

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +       IAE   IS + + K +  LVKAG++  VR    G  + RP +++
Sbjct: 47 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLL--VRRHGSGTFVVRPGERV 97


>gi|297192004|ref|ZP_06909402.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719549|gb|EDY63457.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 333

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R L         P   S +A    ++   +   L  L  AG++ + R
Sbjct: 268 LRAL-------GEPASTSSLARLLGLAPSTVSAHLSVLRAAGLLTSRR 308


>gi|251799959|ref|YP_003014690.1| hypothetical protein Pjdr2_6000 [Paenibacillus sp. JDR-2]
 gi|247547585|gb|ACT04604.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2]
          Length = 237

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +LM      +     +++AE   +SE  +++ +  L  +G+ V    G  GG  L
Sbjct: 9  ILMLL--QLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSL 61


>gi|152996798|ref|YP_001341633.1| GntR domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837722|gb|ABR71698.1| GntR domain protein [Marinomonas sp. MWYL1]
          Length = 258

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           D       IAE   +S   L + L  L    IVE  +G   G+ L +    I
Sbjct: 31 GDRLPPERDIAEQLGVSRTLLREALIMLELMEIVEVRKGS--GIYLLKQPTSI 81


>gi|161525273|ref|YP_001580285.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189349989|ref|YP_001945617.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160342702|gb|ABX15788.1| transcriptional regulator, IclR family [Burkholderia multivorans
          ATCC 17616]
 gi|189334011|dbj|BAG43081.1| IclR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|86742506|ref|YP_482906.1| MarR family transcriptional regulator [Frankia sp. CcI3]
 gi|86569368|gb|ABD13177.1| transcriptional regulator, MarR family [Frankia sp. CcI3]
          Length = 172

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          VL+  A   +   R+S++A+A  +S   L +++  L + G+V
Sbjct: 57 VLVQLAEAPNGELRMSELAQAVLLSRSGLTRLVDRLEREGLV 98


>gi|82548051|gb|ABB82575.1| regulator of catechol degradative operon [Nocardia sp. C-14-1]
          Length = 256

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETV 57
          +  A    +P   ++++A    +S   + +IL  L K G V + 
Sbjct: 18 VLLAFDERHPTPSLAELAAKTDLSRPAVRRILLTLQKLGYVTST 61


>gi|62290751|ref|YP_222544.1| GntR family transcriptional regulator [Brucella abortus bv. 1
          str. 9-941]
 gi|62196883|gb|AAX75183.1| transcriptional regulator, GNTR family/aminotransferase Class-I
          [Brucella abortus bv. 1 str. 9-941]
          Length = 484

 Score = 34.2 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 42 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 87


>gi|330944822|gb|EGH46706.1| transcriptional regulator GntR [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 249

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRPA 70
             D     S I E   +S   + + +  L  +G+V+T  G            G R+    
Sbjct: 36  RGDKLPTESAIMEEQGVSRTVVREAISRLQASGLVDTRHGIGTFVLDTPSPSGFRI--DP 93

Query: 71  DQI-TILDVVKATE 83
             I T+ DV+   E
Sbjct: 94  ATIVTLRDVLAILE 107


>gi|332286053|ref|YP_004417964.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430006|gb|AEC21340.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 241

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      Q+ E   +S   + + +  L   G+V + +GR 
Sbjct: 33 GDKLPSEKQLGEQFSVSRSVVREAVSQLKSEGLVSSQQGRG 73


>gi|315304603|ref|ZP_07874844.1| helix-turn-helix type 11 domain-containing protein [Listeria
          ivanovii FSL F6-596]
 gi|313627032|gb|EFR95924.1| helix-turn-helix type 11 domain-containing protein [Listeria
          ivanovii FSL F6-596]
          Length = 298

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
          R+L    +  +     S++AE   +S   +++ +  L+ AG  V  + G+ GG 
Sbjct: 5  RILAILVLILERKVLASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGF 58


>gi|306844864|ref|ZP_07477447.1| GntR family transcriptional regulator [Brucella sp. BO1]
 gi|306274796|gb|EFM56577.1| GntR family transcriptional regulator [Brucella sp. BO1]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|315506125|ref|YP_004085012.1| transcriptional regulator, gntr family with aminotransferase
          domain protein [Micromonospora sp. L5]
 gi|315412744|gb|ADU10861.1| transcriptional regulator, GntR family with aminotransferase
          domain protein [Micromonospora sp. L5]
          Length = 463

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L   A        + ++     +S + + +  + LV  G+VET  GR 
Sbjct: 16 ALAADAAPGTRLPSVRELTAHHHVSPVTVAEATRRLVADGLVETRPGRG 64


>gi|302534182|ref|ZP_07286524.1| predicted protein [Streptomyces sp. C]
 gi|302443077|gb|EFL14893.1| predicted protein [Streptomyces sp. C]
          Length = 367

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
           N       ++A    +S   +++ ++ L  +G+ V   RG  GG RL
Sbjct: 14 QNRGRMTAPELAAELEVSVRTVYRDVEALGASGVPVRADRGPAGGYRL 61


>gi|256112229|ref|ZP_05453150.1| transcriptional regulator GntR family protein [Brucella
          melitensis bv. 3 str. Ether]
 gi|260562812|ref|ZP_05833298.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991925|ref|ZP_06104482.1| GntR family transcriptional regulator [Brucella melitensis bv. 1
          str. Rev.1]
 gi|265993656|ref|ZP_06106213.1| GntR family transcriptional regulator [Brucella melitensis bv. 3
          str. Ether]
 gi|265999296|ref|ZP_05465714.2| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|260152828|gb|EEW87920.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764637|gb|EEZ10558.1| GntR family transcriptional regulator [Brucella melitensis bv. 3
          str. Ether]
 gi|263002991|gb|EEZ15284.1| GntR family transcriptional regulator [Brucella melitensis bv. 1
          str. Rev.1]
 gi|263093104|gb|EEZ17239.1| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|326409895|gb|ADZ66960.1| GntR family transcriptional regulator [Brucella melitensis M28]
 gi|326539608|gb|ADZ87823.1| transcriptional regulator GntR family protein [Brucella
          melitensis M5-90]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|256391814|ref|YP_003113378.1| ROK family protein [Catenulispora acidiphila DSM 44928]
 gi|256358040|gb|ACU71537.1| ROK family protein [Catenulispora acidiphila DSM 44928]
          Length = 379

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRGRRG----GVRLC 67
          A+  D P     ++EA  IS++ +   +  L   G+V +    RG  G       L 
Sbjct: 18 ALAVDGPASRPALSEALGISKVTMSAAIGELESLGLVRSQGMTRGATGRSAVLYTLA 74


>gi|225853331|ref|YP_002733564.1| GntR family transcriptional regulator [Brucella melitensis ATCC
           23457]
 gi|256045503|ref|ZP_05448386.1| transcriptional regulator GntR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|225641696|gb|ACO01610.1| transcriptional regulator GntR family protein [Brucella melitensis
           ATCC 23457]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|289426809|ref|ZP_06428535.1| putative histidine utilization repressor [Propionibacterium acnes
          J165]
 gi|295130252|ref|YP_003580915.1| putative histidine utilization repressor [Propionibacterium acnes
          SK137]
 gi|289159898|gb|EFD08076.1| putative histidine utilization repressor [Propionibacterium acnes
          J165]
 gi|291375938|gb|ADD99792.1| putative histidine utilization repressor [Propionibacterium acnes
          SK137]
          Length = 253

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 33 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 73


>gi|254463882|ref|ZP_05077293.1| regulatory protein GntR, HTH [Rhodobacterales bacterium Y4I]
 gi|206684790|gb|EDZ45272.1| regulatory protein GntR, HTH [Rhodobacterales bacterium Y4I]
          Length = 242

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++++   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELSDHFKVSRPTVREALKRLAAQSLIRTQRGATGG 73


>gi|163839131|ref|YP_001623536.1| GntR family transcriptional regulator [Renibacterium salmoninarum
          ATCC 33209]
 gi|162952607|gb|ABY22122.1| transcriptional regulator, GntR family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A    +S   + K +  LV+AG++   RG  
Sbjct: 43 ELAAQLKLSRPTMRKAMDELVRAGLLVRKRGVG 75


>gi|114708049|ref|ZP_01440938.1| putative Transcription activator HlyU [Fulvimarina pelagi
          HTCC2506]
 gi|114536505|gb|EAU39640.1| putative Transcription activator HlyU [Fulvimarina pelagi
          HTCC2506]
          Length = 113

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLC 67
          +R+L   A       ++  +A A  +S+  L + L  L   G VET R R+    RL 
Sbjct: 32 LRILCLLAKSE---MQVGTLAAAVGLSQSALSQHLAKLRVGGAVETRRNRQAIHYRLA 86


>gi|62182932|ref|YP_219349.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130565|gb|AAX68268.1| transcriptional repressor for uxu operon [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322717435|gb|EFZ09006.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. A50]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      +IAE   ++   + + L  L   G+VE  RG  
Sbjct: 28 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG 70


>gi|154245265|ref|YP_001416223.1| GntR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159350|gb|ABS66566.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus
           Py2]
          Length = 271

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++++E   ++   L + L  L + G++E   GR 
Sbjct: 69  AELSETFGVNRHTLRRALAHLAEQGLIEATAGRG 102


>gi|83955179|ref|ZP_00963835.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
          NAS-14.1]
 gi|83840508|gb|EAP79681.1| transcriptional regulator, GntR family protein [Sulfitobacter sp.
          NAS-14.1]
          Length = 247

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       ++E   +S   L + L+ L + G+V + +G  
Sbjct: 47 GDKLPTEHAMSEMLEVSRPVLRQALKQLREDGVVVSRQGSG 87


>gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 220

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVE 55
            + +Y  R+L Y   +       S+++E            + E+++ ++ Q L K   +E
Sbjct: 152 TKIEY--RLLHYLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYINRLRQRLGKD-YIE 208

Query: 56  TVRGRRGGVRL 66
           T RG+  G RL
Sbjct: 209 TRRGQ--GYRL 217


>gi|331694102|ref|YP_004330341.1| regulatory protein MarR [Pseudonocardia dioxanivorans CB1190]
 gi|326948791|gb|AEA22488.1| regulatory protein MarR [Pseudonocardia dioxanivorans CB1190]
          Length = 162

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            +DY I  L+  +   D+  R+S +A+    S+  L   +  + KAG+VE
Sbjct: 43 SHSDYSI--LVVLSEAPDHQMRMSALADFIASSKSRLSHQVARMEKAGLVE 91


>gi|328544067|ref|YP_004304176.1| transcriptional regulator [polymorphum gilvum SL003B-26A1]
 gi|326413811|gb|ADZ70874.1| Transcriptional regulator, putative [Polymorphum gilvum
          SL003B-26A1]
          Length = 234

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
                    +A+    S   + + ++ LV  G++++ RG  G     RP +
Sbjct: 23 EGSRLPSERDLAKILSTSRPTVSQAIRILVVKGLIQSRRG-SGSYVTRRPQE 73


>gi|313903698|ref|ZP_07837087.1| regulatory protein ArsR [Thermaerobacter subterraneus DSM 13965]
 gi|313465886|gb|EFR61411.1| regulatory protein ArsR [Thermaerobacter subterraneus DSM 13965]
          Length = 366

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 12  RVLMYCAIHN---------DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           R+L   A            + P    ++A A  +SE  + + ++ L  AG+V   R   G
Sbjct: 285 RMLFALAHEARLQILKLCHEGPKSTQELARALSLSEAAISRHVRILHDAGLVRARR--DG 342

Query: 63  GVRL 66
              L
Sbjct: 343 YYVL 346


>gi|312897438|ref|ZP_07756862.1| DeoR-like helix-turn-helix protein [Megasphaera micronuciformis
          F0359]
 gi|310621499|gb|EFQ05035.1| DeoR-like helix-turn-helix protein [Megasphaera micronuciformis
          F0359]
          Length = 266

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +    + Q++E   ISE    + L  L K G+V  V G
Sbjct: 31 ERAVTVQQLSERYGISESTARRDLLTLQKMGLVNRVHG 68


>gi|310640229|ref|YP_003944987.1| transcriptional regulator, fadr family [Paenibacillus polymyxa
          SC2]
 gi|309245179|gb|ADO54746.1| Transcriptional regulator, FadR family [Paenibacillus polymyxa
          SC2]
          Length = 237

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                  ++++E   +S + + K +  LV  G +   +G+ 
Sbjct: 29 QGSRIPTETELSEMYNVSRITVRKAIAELVHEGYLTKRQGKG 70


>gi|304393243|ref|ZP_07375171.1| putative transcriptional regulator, Crp [Ahrensia sp. R2A130]
 gi|303294250|gb|EFL88622.1| putative transcriptional regulator, Crp [Ahrensia sp. R2A130]
          Length = 264

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           D P     +A+   +S + + + L  L   G V+T RG+            ITILD
Sbjct: 195 DIPVSHDVLADILGLSSVHVSRQLAILQSKGFVKTGRGK------------ITILD 238


>gi|301629449|ref|XP_002943852.1| PREDICTED: HTH-type transcriptional regulator yiaJ-like [Xenopus
          (Silurana) tropicalis]
          Length = 266

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L+      +    + +I+E   +      +IL  LV    V+  R   G  RL     + 
Sbjct: 23 LIDVLASREEAISLKEISERTGLHPSTAHRILNDLVIGRFVD--RPESGSYRLGMRLLE- 79

Query: 74 TILDVVKA 81
           + ++VKA
Sbjct: 80 -LGNLVKA 86


>gi|297195419|ref|ZP_06912817.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152777|gb|EDY63116.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPADQIT- 74
                    + E   +S + + + L  L   G+V T  G  G  R       RPA   + 
Sbjct: 40  GGKLPSSRALVERFRVSPVTVSRALAQLAAEGLVVTRPGA-GAYRAEPRADARPAGDTSW 98

Query: 75  ---------ILDVV-KATEESFFVAECFASHKI 97
                      ++V +A + S  +    A    
Sbjct: 99  QEVALSADAAAEIVPRAVDASGVLVTLAAPPPG 131


>gi|289644428|ref|ZP_06476507.1| transcriptional regulator, ArsR family [Frankia symbiont of
          Datisca glomerata]
 gi|289505753|gb|EFD26773.1| transcriptional regulator, ArsR family [Frankia symbiont of
          Datisca glomerata]
          Length = 126

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL   A   D P  + Q+  A  +    L + L  L ++GIV   R
Sbjct: 32 IRVLELLA---DGPTPVRQLLAAIEVEPSNLSQQLAVLRRSGIVTATR 76


>gi|302866023|ref|YP_003834660.1| regulatory protein GntR HTH [Micromonospora aurantiaca ATCC
          27029]
 gi|302568882|gb|ADL45084.1| regulatory protein GntR HTH [Micromonospora aurantiaca ATCC
          27029]
          Length = 445

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          ++   + GIR     A   D    +  +A    +S   + K  Q L + G+V T  GR G
Sbjct: 15 ISASVESGIRT-GDLA-PGDALPAVRALAAELDVSPATVAKAYQELRQRGLVATA-GRHG 71

Query: 63 GVRLCRPA 70
               RP 
Sbjct: 72 TRVRPRPP 79


>gi|261214846|ref|ZP_05929127.1| GntR family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
 gi|260916453|gb|EEX83314.1| GntR family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|290956075|ref|YP_003487257.1| DeoR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260645601|emb|CBG68692.1| putative DeoR-family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 256

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            L+  A+ +  P  ++ ++E   +S   + + L  L + G++  V G
Sbjct: 14 HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVRLEEEGLLTRVHG 61


>gi|222481501|ref|YP_002567737.1| hypothetical protein Hlac_3638 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454877|gb|ACM59140.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 308

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            + VL Y     D P  +S+IA         + ++L+     G+V T  G
Sbjct: 88  ALEVLYYL----DQPRTVSEIANRSNNYRNTVNRVLKRFRNRGLVGTAHG 133


>gi|221201421|ref|ZP_03574460.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
 gi|221208023|ref|ZP_03581029.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221172208|gb|EEE04649.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221178689|gb|EEE11097.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|169631567|ref|YP_001705216.1| IclR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169243534|emb|CAM64562.1| Putative transcriptional regulator, IclR family [Mycobacterium
          abscessus]
          Length = 239

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
            ++L   A  N     + ++AEA  + +  + +I+Q L  +  V    GR G  +
Sbjct: 7  AAQILDALAESNSG-LSVRELAEATGLPKSSVHRIVQELTVSQYVMAG-GRGGSYQ 60


>gi|251795922|ref|YP_003010653.1| AraC family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543548|gb|ACT00567.1| transcriptional regulator, AraC family [Paenibacillus sp. JDR-2]
          Length = 261

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            L +   H      + +IA A  +S   L ++ + 
Sbjct: 157 ALAWIHEHFAEEVTLKEIAAAANVSPEHLARLFKQ 191


>gi|167745538|ref|ZP_02417665.1| hypothetical protein ANACAC_00229 [Anaerostipes caccae DSM 14662]
 gi|167655259|gb|EDR99388.1| hypothetical protein ANACAC_00229 [Anaerostipes caccae DSM 14662]
          Length = 327

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70
          ++L+             ++ E   +S   ++K ++ L + G V ++V     G +L +  
Sbjct: 4  KILIRL-KQCGGYVSGQELCETFGVSRTAVWKHIKALKEEGYVIDSV--SNKGYKLVKSP 60

Query: 71 DQITILD 77
            I + +
Sbjct: 61 -DILLAE 66


>gi|110668064|ref|YP_657875.1| hypothetical protein HQ2121A [Haloquadratum walsbyi DSM 16790]
 gi|109625811|emb|CAJ52248.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 119

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R++++   ++D   + + IAE   +    +  IL  L + G+V   R
Sbjct: 27 RIVLFLDKNDDRAWKATTIAEQLGLDTDAVSAILSRLKERGLVRHKR 73


>gi|93279909|pdb|2G7U|A Chain A, 2.3 A Structure Of Putative Catechol Degradative Operon
          Regulator From Rhodococcus Sp. Rha1
 gi|93279910|pdb|2G7U|B Chain B, 2.3 A Structure Of Putative Catechol Degradative Operon
          Regulator From Rhodococcus Sp. Rha1
 gi|93279911|pdb|2G7U|C Chain C, 2.3 A Structure Of Putative Catechol Degradative Operon
          Regulator From Rhodococcus Sp. Rha1
 gi|93279912|pdb|2G7U|D Chain D, 2.3 A Structure Of Putative Catechol Degradative Operon
          Regulator From Rhodococcus Sp. Rha1
          Length = 257

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +  A     PN  ++++A    +S   + +IL  L K G V    G  G   L      +
Sbjct: 19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 73

Query: 74 TILD 77
          +I  
Sbjct: 74 SIGQ 77


>gi|50842163|ref|YP_055390.1| GntR family transcriptional regulator [Propionibacterium acnes
          KPA171202]
 gi|289426243|ref|ZP_06427989.1| putative histidine utilization repressor [Propionibacterium acnes
          SK187]
 gi|50839765|gb|AAT82432.1| transcriptional regulator, GntR family [Propionibacterium acnes
          KPA171202]
 gi|289153408|gb|EFD02123.1| putative histidine utilization repressor [Propionibacterium acnes
          SK187]
 gi|313763881|gb|EFS35245.1| putative histidine utilization repressor [Propionibacterium acnes
          HL013PA1]
 gi|313771415|gb|EFS37381.1| putative histidine utilization repressor [Propionibacterium acnes
          HL074PA1]
 gi|313791539|gb|EFS39657.1| putative histidine utilization repressor [Propionibacterium acnes
          HL110PA1]
 gi|313802374|gb|EFS43600.1| putative histidine utilization repressor [Propionibacterium acnes
          HL110PA2]
 gi|313808246|gb|EFS46720.1| putative histidine utilization repressor [Propionibacterium acnes
          HL087PA2]
 gi|313811291|gb|EFS49005.1| putative histidine utilization repressor [Propionibacterium acnes
          HL083PA1]
 gi|313814831|gb|EFS52545.1| putative histidine utilization repressor [Propionibacterium acnes
          HL059PA1]
 gi|313819012|gb|EFS56726.1| putative histidine utilization repressor [Propionibacterium acnes
          HL046PA2]
 gi|313820843|gb|EFS58557.1| putative histidine utilization repressor [Propionibacterium acnes
          HL036PA1]
 gi|313822396|gb|EFS60110.1| putative histidine utilization repressor [Propionibacterium acnes
          HL036PA2]
 gi|313825810|gb|EFS63524.1| putative histidine utilization repressor [Propionibacterium acnes
          HL063PA1]
 gi|313828154|gb|EFS65868.1| putative histidine utilization repressor [Propionibacterium acnes
          HL063PA2]
 gi|313830957|gb|EFS68671.1| putative histidine utilization repressor [Propionibacterium acnes
          HL007PA1]
 gi|313833383|gb|EFS71097.1| putative histidine utilization repressor [Propionibacterium acnes
          HL056PA1]
 gi|313838958|gb|EFS76672.1| putative histidine utilization repressor [Propionibacterium acnes
          HL086PA1]
 gi|314915085|gb|EFS78916.1| putative histidine utilization repressor [Propionibacterium acnes
          HL005PA4]
 gi|314918760|gb|EFS82591.1| putative histidine utilization repressor [Propionibacterium acnes
          HL050PA1]
 gi|314920561|gb|EFS84392.1| putative histidine utilization repressor [Propionibacterium acnes
          HL050PA3]
 gi|314925600|gb|EFS89431.1| putative histidine utilization repressor [Propionibacterium acnes
          HL036PA3]
 gi|314932235|gb|EFS96066.1| putative histidine utilization repressor [Propionibacterium acnes
          HL067PA1]
 gi|314954649|gb|EFS99055.1| putative histidine utilization repressor [Propionibacterium acnes
          HL027PA1]
 gi|314958530|gb|EFT02632.1| putative histidine utilization repressor [Propionibacterium acnes
          HL002PA1]
 gi|314959873|gb|EFT03975.1| putative histidine utilization repressor [Propionibacterium acnes
          HL002PA2]
 gi|314962436|gb|EFT06537.1| putative histidine utilization repressor [Propionibacterium acnes
          HL082PA1]
 gi|314968304|gb|EFT12403.1| putative histidine utilization repressor [Propionibacterium acnes
          HL037PA1]
 gi|314973841|gb|EFT17937.1| putative histidine utilization repressor [Propionibacterium acnes
          HL053PA1]
 gi|314976495|gb|EFT20590.1| putative histidine utilization repressor [Propionibacterium acnes
          HL045PA1]
 gi|314979227|gb|EFT23321.1| putative histidine utilization repressor [Propionibacterium acnes
          HL072PA2]
 gi|314983393|gb|EFT27485.1| putative histidine utilization repressor [Propionibacterium acnes
          HL005PA1]
 gi|314986811|gb|EFT30903.1| putative histidine utilization repressor [Propionibacterium acnes
          HL005PA2]
 gi|314989372|gb|EFT33463.1| putative histidine utilization repressor [Propionibacterium acnes
          HL005PA3]
 gi|315077351|gb|EFT49411.1| putative histidine utilization repressor [Propionibacterium acnes
          HL053PA2]
 gi|315080095|gb|EFT52071.1| putative histidine utilization repressor [Propionibacterium acnes
          HL078PA1]
 gi|315083977|gb|EFT55953.1| putative histidine utilization repressor [Propionibacterium acnes
          HL027PA2]
 gi|315085178|gb|EFT57154.1| putative histidine utilization repressor [Propionibacterium acnes
          HL002PA3]
 gi|315089029|gb|EFT61005.1| putative histidine utilization repressor [Propionibacterium acnes
          HL072PA1]
 gi|315096462|gb|EFT68438.1| putative histidine utilization repressor [Propionibacterium acnes
          HL038PA1]
 gi|315099030|gb|EFT71006.1| putative histidine utilization repressor [Propionibacterium acnes
          HL059PA2]
 gi|315100890|gb|EFT72866.1| putative histidine utilization repressor [Propionibacterium acnes
          HL046PA1]
 gi|315107180|gb|EFT79156.1| putative histidine utilization repressor [Propionibacterium acnes
          HL030PA1]
 gi|315108109|gb|EFT80085.1| putative histidine utilization repressor [Propionibacterium acnes
          HL030PA2]
 gi|327326868|gb|EGE68651.1| transcription regulator, GntR family [Propionibacterium acnes
          HL096PA2]
 gi|327330936|gb|EGE72680.1| transcription regulator, GntR family [Propionibacterium acnes
          HL096PA3]
 gi|327442928|gb|EGE89582.1| putative histidine utilization repressor [Propionibacterium acnes
          HL043PA1]
 gi|327445053|gb|EGE91707.1| putative histidine utilization repressor [Propionibacterium acnes
          HL043PA2]
 gi|327447426|gb|EGE94080.1| putative histidine utilization repressor [Propionibacterium acnes
          HL013PA2]
 gi|327450032|gb|EGE96686.1| putative histidine utilization repressor [Propionibacterium acnes
          HL087PA3]
 gi|327455239|gb|EGF01894.1| putative histidine utilization repressor [Propionibacterium acnes
          HL092PA1]
 gi|327455417|gb|EGF02072.1| putative histidine utilization repressor [Propionibacterium acnes
          HL083PA2]
 gi|328752700|gb|EGF66316.1| putative histidine utilization repressor [Propionibacterium acnes
          HL087PA1]
 gi|328752919|gb|EGF66535.1| putative histidine utilization repressor [Propionibacterium acnes
          HL020PA1]
 gi|328759383|gb|EGF72999.1| putative histidine utilization repressor [Propionibacterium acnes
          HL025PA2]
 gi|328760294|gb|EGF73865.1| transcription regulator, GntR family [Propionibacterium acnes
          HL099PA1]
 gi|332675090|gb|AEE71906.1| transcriptional regulator, GntR family [Propionibacterium acnes
          266]
          Length = 241

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61


>gi|55379981|ref|YP_137831.1| transcription regulator [Haloarcula marismortui ATCC 43049]
 gi|55232706|gb|AAV48125.1| transcription regulator [Haloarcula marismortui ATCC 43049]
          Length = 215

 Score = 34.2 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          R+L   A     P  +++I+E   +S   +   LQ L  AG++++ 
Sbjct: 17 RILKLLAHK---PCYVTEISEYIGVSPKAVIDHLQKLEDAGLIDSR 59


>gi|315302017|ref|ZP_07872998.1| transcriptional regulator [Listeria ivanovii FSL F6-596]
 gi|313629610|gb|EFR97762.1| transcriptional regulator [Listeria ivanovii FSL F6-596]
          Length = 120

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           D    + ++A    ++   + +    L + GI+ T+RG   G  L     +I
Sbjct: 29 GDKLLSVRELASKLEVNPTTVQRAYAELEEHGIIYTIRGT--GKYLTEDKRRI 79


>gi|307331407|ref|ZP_07610526.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
 gi|306882966|gb|EFN14033.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
          Length = 253

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR-GGVRLC 67
           +R+L   A H+   + I  IA    +    L  +L  L + G VE +  G   GG+ L 
Sbjct: 17 ALRILEVVAKHSSGVSDIM-IARETRLPAHQLADLLLMLRREGYVEQIADGAYVGGISLS 75


>gi|290955659|ref|YP_003486841.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260645185|emb|CBG68271.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
          Length = 112

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL       + P  +  ++ A  +    L + L  L ++GIV + R
Sbjct: 22 IRVLELL---QEGPRPVRDLSAAIEVEPSGLSQQLVVLRQSGIVTSTR 66


>gi|302525629|ref|ZP_07277971.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302434524|gb|EFL06340.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 110

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           A   +    ++++AE   +S   + K L+ L +AG++   RGR
Sbjct: 22 LARLTEGEATVNELAEPFEVSLQAVSKHLKVLEQAGLI--SRGR 63


>gi|254694528|ref|ZP_05156356.1| transcriptional regulator GntR family protein [Brucella abortus bv.
           3 str. Tulya]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|239833018|ref|ZP_04681347.1| GntR family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
 gi|239825285|gb|EEQ96853.1| GntR family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|229000361|ref|ZP_04159921.1| hypothetical protein bmyco0003_49080 [Bacillus mycoides Rock3-17]
 gi|228759388|gb|EEM08374.1| hypothetical protein bmyco0003_49080 [Bacillus mycoides Rock3-17]
          Length = 203

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           ++      +  P   +QIAE    S+  + ++L+ L + GIV
Sbjct: 106 IVDDIHSRSAVPMTQTQIAERLGTSKPKVSRVLKQLQEKGIV 147


>gi|229106666|ref|ZP_04236902.1| hypothetical protein bcere0019_54490 [Bacillus cereus Rock3-28]
 gi|228676777|gb|EEL31387.1| hypothetical protein bcere0019_54490 [Bacillus cereus Rock3-28]
          Length = 203

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           ++      +  P   +QIAE    S+  + ++L+ L + GIV
Sbjct: 106 IVDDIHSRSAVPMTQTQIAERLGTSKPKVSRVLKQLQEKGIV 147


>gi|227831622|ref|YP_002833402.1| TRASH transcription regulator domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|227458070|gb|ACP36757.1| TRASH transcription regulator domain protein [Sulfolobus
          islandicus L.S.2.15]
          Length = 163

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          K TD   R L       D    ++++A+   IS     ++L+ L + G
Sbjct: 3  KLTDLEFRALEIL--REDSRISVTELAKRLNISRSTATRLLRNLSRKG 48


>gi|297190332|ref|ZP_06907730.1| transcriptional regulator marR family protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722430|gb|EDY66338.1| transcriptional regulator marR family protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 177

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 4   TKRTDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + R  Y   +R     + H   P+ I  +A A  ++     + +  LVK G+     GR 
Sbjct: 45  SLRPRYAPVLRA---LSAHG--PSSIQDLARATGVTHSAASQTVAQLVKEGLATVGPGRD 99

Query: 62  GGVRLC 67
           G  R+ 
Sbjct: 100 GRRRIA 105


>gi|182438252|ref|YP_001825971.1| hypothetical protein SGR_4459 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466768|dbj|BAG21288.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 269

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           R L+  A   D     S IA     S   +   L+ L  AG+VE VR
Sbjct: 189 RRLLELA---DGVRTASDIARTLGRSAFHVLVDLRRLAAAGLVEAVR 232


>gi|227828888|ref|YP_002830668.1| AsnC family transcriptional regulator [Sulfolobus islandicus
          M.14.25]
 gi|229580576|ref|YP_002838976.1| AsnC family transcriptional regulator [Sulfolobus islandicus
          Y.G.57.14]
 gi|229583433|ref|YP_002841832.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus Y.N.15.51]
 gi|229586095|ref|YP_002844597.1| AsnC family transcriptional regulator [Sulfolobus islandicus
          M.16.27]
 gi|238621080|ref|YP_002915906.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus M.16.4]
 gi|284999175|ref|YP_003420943.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5]
 gi|227460684|gb|ACP39370.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus M.14.25]
 gi|228011292|gb|ACP47054.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus Y.G.57.14]
 gi|228014149|gb|ACP49910.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus Y.N.15.51]
 gi|228021145|gb|ACP56552.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus M.16.27]
 gi|238382150|gb|ACR43238.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus M.16.4]
 gi|284447071|gb|ADB88573.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5]
 gi|323475993|gb|ADX86599.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus REY15A]
 gi|323478713|gb|ADX83951.1| putative transcriptional regulator, AsnC family [Sulfolobus
          islandicus HVE10/4]
          Length = 163

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          K TD   R L       D    ++++A+   IS     ++L+ L + G
Sbjct: 3  KLTDLEFRALEIL--REDSRISVTELAKRLNISRSTATRLLRNLSRKG 48


>gi|163854272|ref|YP_001642315.1| cyclic nucleotide-binding [Methylobacterium extorquens PA1]
 gi|163665877|gb|ABY33244.1| cyclic nucleotide-binding [Methylobacterium extorquens PA1]
          Length = 317

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P   + +A+   +S + + ++LQ L + G++E
Sbjct: 244 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 275


>gi|114049846|emb|CAK50856.1| putative transcriptional regulator [Streptomyces ambofaciens]
 gi|114050068|emb|CAK51094.1| putative transcriptional regulator [Streptomyces ambofaciens]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 51 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 97


>gi|116689221|ref|YP_834844.1| IclR family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|116647310|gb|ABK07951.1| transcriptional regulator, IclR family [Burkholderia cenocepacia
          HI2424]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|306842953|ref|ZP_07475587.1| transcriptional regulator GntR family protein [Brucella sp. BO2]
 gi|306286881|gb|EFM58406.1| transcriptional regulator GntR family protein [Brucella sp. BO2]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|302539637|ref|ZP_07291979.1| DeoR-family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302457255|gb|EFL20348.1| DeoR-family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 163

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 IAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71
          +A    +S   + + +  L + G      +G  G  RL R A 
Sbjct: 36 LAARLGVSPRTVRRDISRLRELGYPGTATKGPSGYYRLSRGAR 78


>gi|296535786|ref|ZP_06897947.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296263854|gb|EFH10318.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 117

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   +        H        ++A    + +  +   L  L +AG++ + R
Sbjct: 13 LSQGTR--LETFRLLVRHEPEGLPAGEVARQLDVPQNTMSTHLAVLARAGLLRSER 66


>gi|296131567|ref|YP_003638814.1| transcriptional regulator, GntR family [Thermincola sp. JR]
 gi|296030145|gb|ADG80913.1| transcriptional regulator, GntR family [Thermincola potens JR]
          Length = 125

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 20/42 (47%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +++    + ++A    ++   + K  + L + G + ++ G+ 
Sbjct: 31 NDEQLPSVRELALELTVNPNTIQKAYRELERQGYIYSIPGKG 72


>gi|291518537|emb|CBK73758.1| AraC-type DNA-binding domain-containing proteins [Butyrivibrio
           fibrisolvens 16/4]
          Length = 275

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
            L+  T Y          H   P  +  +AE    S  +L ++ Q    AGI
Sbjct: 174 KLSSITRY-------MKDHYSEPLSLEMMAEQFNYSPSYLSRMFQK--HAGI 216


>gi|291303727|ref|YP_003515005.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572947|gb|ADD45912.1| transcriptional regulator, ArsR family [Stackebrandtia
          nassauensis DSM 44728]
          Length = 116

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +L   A     P   + +A    I+   + K L  L  AG+V    G
Sbjct: 31 ILAELAA--GGPATATDLAARLPITRQGIAKHLNLLADAGLVTAEPG 75


>gi|271965909|ref|YP_003340105.1| ArsR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509084|gb|ACZ87362.1| putative transcriptional regulator, ArsR family
          [Streptosporangium roseum DSM 43021]
          Length = 113

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R+L   A H      +  I     +S+  +   L+ L + G++ + R   
Sbjct: 39 LRILSIVAGHAGGEVCVCDITGVFEVSQPTISHHLKVLKEVGLLVSERRAS 89


>gi|302524571|ref|ZP_07276913.1| IclR-type transcriptional regulator [Streptomyces sp. AA4]
 gi|302433466|gb|EFL05282.1| IclR-type transcriptional regulator [Streptomyces sp. AA4]
          Length = 261

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          G+ VL   A H   P   + IA    +     + +L  L  AG V 
Sbjct: 12 GLSVLRLLAGHAG-PVSAAAIARDLDLPRSTTYHLLNELTSAGFVT 56


>gi|256391330|ref|YP_003112894.1| MarR family transcriptional regulator with acetyltransferase
          activity [Catenulispora acidiphila DSM 44928]
 gi|256357556|gb|ACU71053.1| transcriptional regulator, MarR family with acetyltransferase
          activity [Catenulispora acidiphila DSM 44928]
          Length = 322

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +RVL+  A      + + +I E   +   +L +IL      G+V  V+GR
Sbjct: 39 VRVLLEIAHAGPEGSTVVRIREDLGLDPGYLSRILARFDSEGMV--VKGR 86


>gi|284038117|ref|YP_003388047.1| GntR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817410|gb|ADB39248.1| transcriptional regulator, GntR family [Spirosoma linguale DSM 74]
          Length = 365

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +N+    IS+++    ++   + K  + L + G + +V+G+ 
Sbjct: 62  NNEQLPSISELSVEYYLARDTVEKAYRELRERGYITSVQGKG 103


>gi|288574604|ref|ZP_06392961.1| transcriptional regulator, GntR family [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570345|gb|EFC91902.1| transcriptional regulator, GntR family [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 221

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          IA+   +S   + + L+ L   GIV+ +    GG RL  P  +
Sbjct: 38 IAKRLDVSRTPVREALRKLANEGIVQLI--PNGGARLTAPTKE 78


>gi|257792148|ref|YP_003182754.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|317488767|ref|ZP_07947301.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|325833031|ref|ZP_08165658.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
 gi|257476045|gb|ACV56365.1| transcriptional regulator, GntR family [Eggerthella lenta DSM
          2243]
 gi|316912137|gb|EFV33712.1| gntR family Bacterial regulatory protein [Eggerthella sp.
          1_3_56FAA]
 gi|325485748|gb|EGC88213.1| transcriptional regulator, GntR family [Eggerthella sp. HGA1]
          Length = 159

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    +  +A    I+   + K    LV  G +E+ RGR 
Sbjct: 34 GDQLPTVRGLASEISINYNTVNKAYLSLVSDGYLESTRGRG 74


>gi|284032522|ref|YP_003382453.1| Helix-turn-helix type 11 domain-containing protein [Kribbella
          flavida DSM 17836]
 gi|283811815|gb|ADB33654.1| Helix-turn-helix type 11 domain protein [Kribbella flavida DSM
          17836]
          Length = 331

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
            +++A    +S   +   +  L + G  V+ VRG  G  +L 
Sbjct: 26 TGAELASRLNVSTRTIRNDVDRLRELGYPVDAVRGPAGHYQLG 68


>gi|218670880|ref|ZP_03520551.1| probable transcriptional regulator protein, ROK family [Rhizobium
          etli GR56]
          Length = 243

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R ++   IH   P   ++IA     ++  + +I+  L+  G++   R R G
Sbjct: 22 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 72


>gi|119491027|ref|XP_001263174.1| O-methyltransferase GliM2 [Neosartorya fischeri NRRL 181]
 gi|119411334|gb|EAW21277.1| O-methyltransferase GliM2 [Neosartorya fischeri NRRL 181]
          Length = 433

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 7   TDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53
           ++Y        A H     P  ISQ+AEA  + E  LF+I++ L + G 
Sbjct: 86  SEYA------LADHVQKLQPCSISQLAEATGLHEQGLFQIVRYLREMGY 128


>gi|187479869|ref|YP_787894.1| AraC family transcriptional regulator [Bordetella avium 197N]
 gi|115424456|emb|CAJ51010.1| AraC-family transcriptional regulator [Bordetella avium 197N]
          Length = 279

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 1  MHLTKRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
          M  + R+ Y  R   VL + A H      + ++AE  C+S     ++ + L
Sbjct: 1  MKPSTRSQYAARLEPVLQWLARHPQATPDLYRLAELACLSPFHFHRVYRAL 51


>gi|16767751|ref|NP_463366.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167551234|ref|ZP_02344989.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991300|ref|ZP_02572399.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234638|ref|ZP_02659696.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243999|ref|ZP_02668931.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168464592|ref|ZP_02698495.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821045|ref|ZP_02833045.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444601|ref|YP_002043749.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450357|ref|YP_002048528.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194735969|ref|YP_002117425.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248711|ref|YP_002149462.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265892|ref|ZP_03165966.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198242237|ref|YP_002218377.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388693|ref|ZP_03215305.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927164|ref|ZP_03218366.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205355233|ref|YP_002229034.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859633|ref|YP_002246284.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224586332|ref|YP_002640131.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910670|ref|ZP_04654507.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16423073|gb|AAL23325.1| transcriptional repressor for uxu operon [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194403264|gb|ACF63486.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408661|gb|ACF68880.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194711471|gb|ACF90692.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632633|gb|EDX51087.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212414|gb|ACH49811.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197244147|gb|EDY26767.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291829|gb|EDY31179.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936753|gb|ACH74086.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605791|gb|EDZ04336.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323829|gb|EDZ09024.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205275014|emb|CAR40098.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323822|gb|EDZ11661.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330347|gb|EDZ17111.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205337004|gb|EDZ23768.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342210|gb|EDZ28974.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206711436|emb|CAR35820.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470860|gb|ACN48690.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249593|emb|CBG27462.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996857|gb|ACY91742.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160989|emb|CBW20525.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915604|dbj|BAJ39578.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084594|emb|CBY94385.1| Exu regulon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615677|gb|EFY12597.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618737|gb|EFY15626.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621849|gb|EFY18699.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627574|gb|EFY24365.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630880|gb|EFY27644.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637901|gb|EFY34602.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642263|gb|EFY38870.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643865|gb|EFY40413.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651057|gb|EFY47442.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656688|gb|EFY52976.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659887|gb|EFY56130.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322661903|gb|EFY58119.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666350|gb|EFY62528.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672769|gb|EFY68880.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676199|gb|EFY72270.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680683|gb|EFY76721.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684423|gb|EFY80427.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323132846|gb|ADX20276.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194240|gb|EFZ79437.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197385|gb|EFZ82525.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201497|gb|EFZ86561.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206011|gb|EFZ90973.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213023|gb|EFZ97825.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215395|gb|EGA00139.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219378|gb|EGA03863.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323228852|gb|EGA12981.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236537|gb|EGA20613.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239963|gb|EGA24010.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241991|gb|EGA26020.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247862|gb|EGA31799.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251499|gb|EGA35370.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258135|gb|EGA41812.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263722|gb|EGA47243.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265684|gb|EGA49180.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270129|gb|EGA53577.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326626185|gb|EGE32530.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326630395|gb|EGE36738.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332991316|gb|AEF10299.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      +IAE   ++   + + L  L   G+VE  RG             I +LD 
Sbjct: 28  RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136
                 S    E   +    C   G   L    R+ L +        Q + E +++ R +
Sbjct: 76  ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128

Query: 137 IK 138
           ++
Sbjct: 129 LQ 130


>gi|54025779|ref|YP_120021.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54017287|dbj|BAD58657.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 162

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A+    P  +  IAEA  +    L  +L+ L  AG++   R
Sbjct: 51 LVMLALWERAPMSVKAIAEAIQLDSPTLSPLLKRLEAAGLITRER 95


>gi|89093743|ref|ZP_01166689.1| biotin operon repressor [Oceanospirillum sp. MED92]
 gi|89081873|gb|EAR61099.1| biotin operon repressor [Oceanospirillum sp. MED92]
          Length = 324

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          IR L+   + +   +  S++ E   IS   ++K ++ L + G+ + +V+GR  G R+   
Sbjct: 3  IRSLLSI-LADGKFHSGSELGEKIGISRSAIWKHIRRLEEGGLEIYSVKGR--GYRV--- 56

Query: 70 ADQITILDV 78
             + +LDV
Sbjct: 57 PGGLNLLDV 65


>gi|170021182|ref|YP_001726136.1| extracellular solute-binding protein [Escherichia coli ATCC 8739]
 gi|194437390|ref|ZP_03069487.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 101-1]
 gi|253774564|ref|YP_003037395.1| extracellular solute-binding protein family 5 [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254160515|ref|YP_003043623.1| putative transporter subunit periplasmic-binding component of ABC
          superfamily [Escherichia coli B str. REL606]
 gi|300930252|ref|ZP_07145665.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 187-1]
 gi|169756110|gb|ACA78809.1| extracellular solute-binding protein family 5 [Escherichia coli
          ATCC 8739]
 gi|194423559|gb|EDX39549.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli 101-1]
 gi|242376227|emb|CAQ30918.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli BL21(DE3)]
 gi|253325608|gb|ACT30210.1| extracellular solute-binding protein family 5 [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253972416|gb|ACT38087.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli B str. REL606]
 gi|253976626|gb|ACT42296.1| predicted transporter subunit: periplasmic-binding component of
          ABC superfamily [Escherichia coli BL21(DE3)]
 gi|300461824|gb|EFK25317.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 187-1]
 gi|323963435|gb|EGB58997.1| extracellular solute-binding protein [Escherichia coli H489]
 gi|323972299|gb|EGB67509.1| extracellular solute-binding protein [Escherichia coli TA007]
          Length = 566

 Score = 34.2 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            IS++AE C  SE  +  +L+   +AG +E    + RG+ G +R     + +    + +
Sbjct: 24 VTISELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKCGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|328956062|ref|YP_004373395.1| GntR family transcriptional regulator [Coriobacterium glomerans
          PW2]
 gi|328456386|gb|AEB07580.1| transcriptional regulator, GntR family [Coriobacterium glomerans
          PW2]
          Length = 240

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            N+    + ++ E   +S++ + + +  L +AG+V T RG  
Sbjct: 21 RPNERLPTVVELCEIYAVSKITVKRAMDWLTEAGLVTTRRGSG 63


>gi|320547265|ref|ZP_08041557.1| transcriptional regulator [Streptococcus equinus ATCC 9812]
 gi|320448069|gb|EFW88820.1| transcriptional regulator [Streptococcus equinus ATCC 9812]
          Length = 106

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y + + +   ++ +   R   +AE  CIS   L K++  L    +V 
Sbjct: 5  YALVLFI---LNQENGKRCKDLAEILCISPPSLSKLVTKLAHQELVT 48


>gi|319787765|ref|YP_004147240.1| transcriptional repressor, LexA family [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466277|gb|ADV28009.1| transcriptional repressor, LexA family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 212

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACC-ISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +       +++IA+     S     K +Q LV  G++E V GR+ G+RL
Sbjct: 24 LAGGRAPSLAEIADEFGFSSRNAAQKHVQTLVADGLLEQVPGRKRGLRL 72


>gi|303238310|ref|ZP_07324845.1| transcriptional regulator, MarR family [Acetivibrio
          cellulolyticus CD2]
 gi|302594014|gb|EFL63727.1| transcriptional regulator, MarR family [Acetivibrio
          cellulolyticus CD2]
          Length = 154

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + P  IS++AE    S   + +IL  L   G VE
Sbjct: 53 ETPPTISEVAELTGSSHQNVKQILLKLENIGFVE 86


>gi|300788610|ref|YP_003768901.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299798124|gb|ADJ48499.1| ROK family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 387

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-------ETVRGRRG------GV 64
          A+    P   + +AE   +++  + K++  LV+AG++          RGR G      G 
Sbjct: 21 AVSRGGPLTRAALAEVTGLTKSTVSKLVGDLVEAGLLAETGPARAGERGRPGVDVVLSGA 80

Query: 65 RLCRPADQITI 75
          R+     +I +
Sbjct: 81 RMASLGLEINV 91


>gi|298487440|ref|ZP_07005485.1| transcriptional regulator, GntR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158030|gb|EFH99105.1| transcriptional regulator, GntR family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 44  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 102

Query: 81  ATE 83
             E
Sbjct: 103 LLE 105


>gi|297158862|gb|ADI08574.1| transcriptional regulator, HxlR family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 138

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 15 MYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVE 55
          +  A     P R S+++     +S+  L + L+ L + G+V 
Sbjct: 40 LALAALAGGPMRYSELSRRLAGVSQKMLTQTLRNLERDGLVT 81


>gi|291009771|ref|ZP_06567744.1| IclR family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCR 68
          + ++  A  I    P  ++++     +++  + ++L  L    +++   GR G G+RL  
Sbjct: 3  KAMVVLAAVIAEGGPIGLAELTRRTGLAKPTVHRVLTTLRAHQMIDQHGGRYGPGMRL-- 60

Query: 69 PADQITI 75
              I++
Sbjct: 61 ---DISV 64


>gi|326201444|ref|ZP_08191315.1| transcriptional regulator, ArsR family [Clostridium papyrosolvens
          DSM 2782]
 gi|325988044|gb|EGD48869.1| transcriptional regulator, ArsR family [Clostridium papyrosolvens
          DSM 2782]
          Length = 300

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+      I+++   A        I Q+A+   +S   +   ++ L KAGIV + R
Sbjct: 16 LSSNVR--IKIINLLATEA---LNIKQLAQELGLSSAIVTMHVKKLEKAGIVHSER 66


>gi|254819378|ref|ZP_05224379.1| transcriptional regulator, ArsR family protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 125

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC-R 68
           +R+ +   +   +   + ++ +A  + +  + + L+ L  AG+V   R GR    RL   
Sbjct: 49  VRIAIVLQLRESHRC-VHELVDALGVPQPLVSQHLKILKAAGVVAGERSGREVLYRLADH 107

Query: 69  PADQITILDVVKATEE 84
               I +  V  A+E+
Sbjct: 108 HLAHIVVDAVAHASED 123


>gi|296138569|ref|YP_003645812.1| GntR family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296026703|gb|ADG77473.1| transcriptional regulator, GntR family with aminotransferase
          domain [Tsukamurella paurometabola DSM 20162]
          Length = 462

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          +  D    +  +A    +S   +    Q L ++G+V + RGR G
Sbjct: 39 LPGDRLPTVRTLARELGVSPATISHGWQALARSGLVVS-RGRSG 81


>gi|257784865|ref|YP_003180082.1| transcriptional regulator, GntR family [Atopobium parvulum DSM
           20469]
 gi|257473372|gb|ACV51491.1| transcriptional regulator, GntR family [Atopobium parvulum DSM
           20469]
          Length = 242

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 23/84 (27%)

Query: 21  NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------------GGV- 64
            D P     +++++  +S   +   LQ L   G++   RGR               GG  
Sbjct: 28  PDDPLPSERELSDSYGLSRTTVRLALQELEHMGLIYRQRGRGTFVADISERATDLMGGYS 87

Query: 65  ------RLCRPADQITI-LDVVKA 81
                 +L R     T+  D ++A
Sbjct: 88  FTDQQRQLGRVPKTTTLEFDTIEA 111


>gi|253699950|ref|YP_003021139.1| GntR family transcriptional regulator [Geobacter sp. M21]
 gi|251774800|gb|ACT17381.1| regulatory protein GntR HTH [Geobacter sp. M21]
          Length = 240

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77
           +      ++AE   +S   + + L  L  +G+VET +G  GG     L   +  + + +
Sbjct: 31 GEKLPPERELAELFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENSAGMPLSE 88

Query: 78 VVKATEESFFV 88
          +++  +    +
Sbjct: 89 LIR-IDGDRAL 98


>gi|190895311|ref|YP_001985604.1| putative ROK family transcriptional regulator [Rhizobium etli
          CIAT 652]
 gi|190700972|gb|ACE95054.1| probable transcriptional regulator protein, ROK family [Rhizobium
          etli CIAT 652]
          Length = 412

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R ++   IH   P   ++IA     ++  + +I+  L+  G++   R R G
Sbjct: 26 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 76


>gi|189024964|ref|YP_001935732.1| GntR family transcriptional regulator [Brucella abortus S19]
 gi|237816257|ref|ZP_04595250.1| Bacterial regulatory protein, GntR family [Brucella abortus str.
           2308 A]
 gi|254690039|ref|ZP_05153293.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6
           str. 870]
 gi|256258293|ref|ZP_05463829.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9
           str. C68]
 gi|297247137|ref|ZP_06930855.1| GntR family Bacterial regulatory protein [Brucella abortus bv. 5
           str. B3196]
 gi|189020536|gb|ACD73258.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 gi|237788324|gb|EEP62539.1| Bacterial regulatory protein, GntR family [Brucella abortus str.
           2308 A]
 gi|297174306|gb|EFH33653.1| GntR family Bacterial regulatory protein [Brucella abortus bv. 5
           str. B3196]
          Length = 497

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|168262448|ref|ZP_02684421.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348929|gb|EDZ35560.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      +IAE   ++   + + L  L   G+VE  RG             I +LD 
Sbjct: 28  RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136
                 S    E   +    C   G   L    R+ L +        Q + E +++ R +
Sbjct: 76  ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128

Query: 137 IK 138
           ++
Sbjct: 129 LQ 130


>gi|157692951|ref|YP_001487413.1| manganese transport transcriptional regulator [Bacillus pumilus
          SAFR-032]
 gi|167011807|sp|A8FF36|MNTR_BACP2 RecName: Full=Transcriptional regulator mntR; AltName:
          Full=Manganese transport regulator
 gi|157681709|gb|ABV62853.1| manganese (Mn2+) transporter transcriptional regulator [Bacillus
          pumilus SAFR-032]
          Length = 144

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G++ T +G++ G R
Sbjct: 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLILTPKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|71737255|ref|YP_275184.1| GntR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557808|gb|AAZ37019.1| transcriptional regulator, GntR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 260

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ---------ITILDVVK 80
           I EA  +S   +   L  +  AG+VET  G  G   L  P  +          T+ DV+ 
Sbjct: 60  IMEAEGVSRTVVRDALSRMQAAGLVETRHGV-GTFVLDMPPPEGFSVGPATIATLSDVLN 118

Query: 81  ATE 83
             E
Sbjct: 119 LLE 121


>gi|21243753|ref|NP_643335.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109340|gb|AAM37871.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 534

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFL 41
           R L++   H   P  +  +A    +S+  L
Sbjct: 432 RALVHLGEHYAEPLTLGDLARQAHVSQSHL 461


>gi|82700662|ref|YP_415236.1| GntR family regulatory protein [Brucella melitensis biovar
          Abortus 2308]
 gi|254696153|ref|ZP_05157981.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254731071|ref|ZP_05189649.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4
          str. 292]
 gi|260546014|ref|ZP_05821754.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260755575|ref|ZP_05867923.1| GntR family transcriptional regulator [Brucella abortus bv. 6
          str. 870]
 gi|260758798|ref|ZP_05871146.1| GntR family transcriptional regulator [Brucella abortus bv. 4
          str. 292]
 gi|260760522|ref|ZP_05872865.1| GntR family transcriptional regulator [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260884599|ref|ZP_05896213.1| GntR family transcriptional regulator [Brucella abortus bv. 9
          str. C68]
 gi|82616763|emb|CAJ11850.1| Bacterial regulatory protein, GntR family:Aminotransferase, class
          I and II [Brucella melitensis biovar Abortus 2308]
 gi|260096121|gb|EEW79997.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260669116|gb|EEX56056.1| GntR family transcriptional regulator [Brucella abortus bv. 4
          str. 292]
 gi|260670954|gb|EEX57775.1| GntR family transcriptional regulator [Brucella abortus bv. 2
          str. 86/8/59]
 gi|260675683|gb|EEX62504.1| GntR family transcriptional regulator [Brucella abortus bv. 6
          str. 870]
 gi|260874127|gb|EEX81196.1| GntR family transcriptional regulator [Brucella abortus bv. 9
          str. C68]
          Length = 493

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 51 MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 96


>gi|16763314|ref|NP_458931.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144792|ref|NP_808134.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56416290|ref|YP_153365.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197365214|ref|YP_002144851.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213021605|ref|ZP_03336052.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213162283|ref|ZP_03347993.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213417415|ref|ZP_03350557.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213428372|ref|ZP_03361122.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213648412|ref|ZP_03378465.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213852284|ref|ZP_03381816.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289826559|ref|ZP_06545622.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25325766|pir||AH1066 uxu operon transcription regulator uxuR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505623|emb|CAD03351.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140431|gb|AAO71994.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56130547|gb|AAV80053.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096691|emb|CAR62313.1| uxu operon transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
              +      +IAE   ++   + + L  L   G+VE  RG             I +LD 
Sbjct: 28  RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG-----------IYVLD- 75

Query: 79  VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT--QYSIECLVRNRSS 136
                 S    E   +    C   G   L    R+ L +        Q + E +++ R +
Sbjct: 76  ------SADNNEMEGADVNHCNDAGPFELLQA-RQLLESNIAEFAALQATREDIIKMRQA 128

Query: 137 IK 138
           ++
Sbjct: 129 LQ 130


>gi|226944763|ref|YP_002799836.1| GntR family regulatory protein [Azotobacter vinelandii DJ]
 gi|226719690|gb|ACO78861.1| Bacterial regulatory protein, GntR family [Azotobacter vinelandii
          DJ]
          Length = 241

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          +         Q+AE   +S   + + +  L   GI+ + RG
Sbjct: 28 LAESRLPTEHQLAEQLNVSRSVIREAVSQLKADGILISRRG 68


>gi|330468152|ref|YP_004405895.1| GntR domain-containing protein [Verrucosispora maris AB-18-032]
 gi|328811123|gb|AEB45295.1| GntR domain-containing protein [Verrucosispora maris AB-18-032]
          Length = 220

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
           ++             +IAEA  +S   + + L  L   G+V     +RG + L   A +
Sbjct: 26 AILEQVHPGGSLVSEGEIAEATGVSRTPVREALLRLETEGLVRLYP-KRGALILPVSARE 84

Query: 73 ITILDVVKA 81
          IT  DV++A
Sbjct: 85 IT--DVIEA 91


>gi|325529375|gb|EGD06299.1| IclR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 274

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|313836913|gb|EFS74627.1| putative histidine utilization repressor [Propionibacterium acnes
          HL037PA2]
 gi|314971576|gb|EFT15674.1| putative histidine utilization repressor [Propionibacterium acnes
          HL037PA3]
          Length = 240

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61


>gi|313632350|gb|EFR99390.1| conserved hypothetical protein [Listeria seeligeri FSL N1-067]
 gi|313636870|gb|EFS02488.1| conserved hypothetical protein [Listeria seeligeri FSL S4-171]
          Length = 233

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               ++A     S+ +  K+L  L + GI+++ +
Sbjct: 176 LTYQELANFANTSKSYTSKVLAELREEGILDSQK 209


>gi|302538078|ref|ZP_07290420.1| ArsR2 [Streptomyces sp. C]
 gi|302446973|gb|EFL18789.1| ArsR2 [Streptomyces sp. C]
          Length = 128

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 54  LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLSSER 100


>gi|289435482|ref|YP_003465354.1| hypothetical protein lse_2121 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171726|emb|CBH28272.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 233

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               ++A     S+ +  K+L  L + GI+++ +
Sbjct: 176 LTYQELANFANTSKSYTSKVLAELREEGILDSQK 209


>gi|284176262|ref|YP_003406539.1| hypothetical protein Htur_5235 [Haloterrigena turkmenica DSM 5511]
 gi|284017919|gb|ADB63866.1| hypothetical protein Htur_5235 [Haloterrigena turkmenica DSM 5511]
          Length = 313

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           LT +T   +    Y     D P  ++ IAE        + ++L  L   GIV T  GR G
Sbjct: 89  LTGKT---LEACYYL----DRPRTVADIAERSDNYRNTVNRVLGSLRDRGIVGTDDGRYG 141


>gi|284033497|ref|YP_003383428.1| transcriptional regulator TrmB [Kribbella flavida DSM 17836]
 gi|283812790|gb|ADB34629.1| transcriptional regulator, TrmB [Kribbella flavida DSM 17836]
          Length = 151

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL   A   +   ++  IA++  +S+  L +++  L  AG+VE
Sbjct: 60  VLERLAELPEQSAKVQTIAKSVHLSQSALSRVIGRLETAGLVE 102


>gi|260893577|ref|YP_003239674.1| CBS domain containing protein [Ammonifex degensii KC4]
 gi|260865718|gb|ACX52824.1| CBS domain containing protein [Ammonifex degensii KC4]
          Length = 209

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M LT+R +     ++   +  + P    QIAE   ++   L   L  L  AG++E  R R
Sbjct: 1  MELTRRQE----AILGI-VKAEGPITSEQIAERLNVARATLRPDLALLTMAGLLEA-RPR 54

Query: 61 RGGVRLCRPADQI 73
           G     +   ++
Sbjct: 55 VGYYYTGKSPYEV 67


>gi|239980571|ref|ZP_04703095.1| ArsR family transcriptional regulator [Streptomyces albus J1074]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        +  +  A  +S+  +   L+ L +AG++ + R
Sbjct: 45 LRLLSMIASRAGGEVCVCDLTPAFALSQPTISHHLKLLRQAGLIASER 92


>gi|269958116|ref|YP_003327905.1| ArsR family transcriptional regulator [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306797|gb|ACZ32347.1| transcriptional regulator, ArsR family [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 120

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
           IR+L   A   D    I  + E   +S+  +   ++ L +AG+V    RG+     +   
Sbjct: 45  IRLLSIIAAAPDGDACICDLTEPVGLSQPTVSHHMKLLAEAGLVTREQRGKWAHFAIAPD 104

Query: 70  AD 71
           A 
Sbjct: 105 AR 106


>gi|218248510|ref|YP_002373881.1| GntR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061577|ref|YP_003139465.1| GntR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218168988|gb|ACK67725.1| transcriptional regulator, GntR family [Cyanothece sp. PCC 8801]
 gi|256591743|gb|ACV02630.1| transcriptional regulator, GntR family [Cyanothece sp. PCC 8802]
          Length = 329

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLCRP 69
             Q+A    +    + KI Q L ++G+VE++ G           GG  L  P
Sbjct: 39 STRQLATITGLHRNTINKIYQQLEESGLVESIAGSGIYVKITSNEGGNLLGSP 91


>gi|147921266|ref|YP_684920.1| hypothetical protein RCIX90 [uncultured methanogenic archaeon
          RC-I]
 gi|110620316|emb|CAJ35594.1| hypothetical protein RCIX90 [uncultured methanogenic archaeon
          RC-I]
          Length = 581

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 3  LTKR--TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          LT    T+Y     +Y A+      + S +A+   I    ++ +++ L + G++
Sbjct: 11 LTSFGLTEY--EAKVYLALATRGVQKASALADISDIPRPHVYSVIKLLHEKGLI 62


>gi|75909546|ref|YP_323842.1| Crp/FNR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703271|gb|ABA22947.1| transcriptional regulator, Crp/Fnr family [Anabaena variabilis ATCC
           29413]
          Length = 207

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 12  RVLMYC--AIHNDYPN-----RISQIAEACCISELFLFKILQPLVKAGIVE 55
           RVL Y   A H           + +IAE   +S+  L ++L  L K G + 
Sbjct: 142 RVLRYLEIAAHPHGNIVNLDKPLKEIAEDMGLSQEALSRVLSQLQKDGAIT 192


>gi|88854585|ref|ZP_01129252.1| putative transcriptional regulator [marine actinobacterium
           PHSC20C1]
 gi|88816393|gb|EAR26248.1| putative transcriptional regulator [marine actinobacterium
           PHSC20C1]
          Length = 131

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +       + Q+A    I+   + +  + L   G + + RGR G V   RP D   +L +
Sbjct: 44  LAGTKLATVRQLATDLGIAPNTVARAYRELEADGFLLS-RGRNGTVVKARPGDAAALLQL 102


>gi|116671117|ref|YP_832050.1| IclR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611226|gb|ABK03950.1| transcriptional regulator, IclR family [Arthrobacter sp. FB24]
          Length = 244

 Score = 34.2 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV------ETVRGRRGG 63
          GIR L   A   + P  I+++A+A  +     ++IL+ L    ++      +   G  G 
Sbjct: 25 GIRALEILA-EAEQPLTIAELADAMGVHRSVAYRILRTLEDHSLLVRDDAGKVQPGP-GL 82

Query: 64 VRLCR 68
            L R
Sbjct: 83 AVLAR 87


>gi|313124352|ref|YP_004034611.1| transcriptional regulator, gntr family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|312280915|gb|ADQ61634.1| Transcriptional regulator, GntR family [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
          Length = 124

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + ++    + ++A     +   + K    L + G V +V+GR 
Sbjct: 30 LPDEQLPSVRKLAMELSTNPNTVQKAYAALEREGYVYSVKGRG 72


>gi|256157799|ref|ZP_05455717.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M490/95/1]
 gi|256253237|ref|ZP_05458773.1| Bacterial regulatory protein, GntR family [Brucella ceti B1/94]
 gi|261220348|ref|ZP_05934629.1| transcriptional regulator [Brucella ceti B1/94]
 gi|265996305|ref|ZP_06108862.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|260918932|gb|EEX85585.1| transcriptional regulator [Brucella ceti B1/94]
 gi|262550602|gb|EEZ06763.1| transcriptional regulator [Brucella ceti M490/95/1]
          Length = 257

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +       IAE   IS + + K +  LVKAG++    G  
Sbjct: 45 GEALPPERDIAEYANISRVTVRKAVDDLVKAGLLVRRHGSG 85


>gi|239981129|ref|ZP_04703653.1| GntR family transcriptional regulator [Streptomyces albus J1074]
 gi|291452997|ref|ZP_06592387.1| gntR-family transcriptional regulator [Streptomyces albus J1074]
 gi|291355946|gb|EFE82848.1| gntR-family transcriptional regulator [Streptomyces albus J1074]
          Length = 235

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 11 IRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +R   Y A H     D       +A+   +S   + + +  L   G+VET  G  GG  L
Sbjct: 22 LRA--YAAEHRLAAGDRLPAERDLAQRLGVSRASVKQAVVVLEVQGLVETRHG--GGTYL 77

Query: 67 CRP 69
           R 
Sbjct: 78 LRD 80


>gi|218887040|ref|YP_002436361.1| AraC family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757994|gb|ACL08893.1| transcriptional regulator, AraC family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 338

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49
           +R           P  ++++AEA  +S     ++   LV
Sbjct: 69  VRAACDTLRQRAEPVPLAELAEAAGLSPSHFQRVFTRLV 107


>gi|254420829|ref|ZP_05034553.1| transcriptional regulator, ArsR family protein [Brevundimonas sp.
          BAL3]
 gi|196187006|gb|EDX81982.1| transcriptional regulator, ArsR family protein [Brevundimonas sp.
          BAL3]
          Length = 111

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    H        +I+    I    L   L  L +AG++ + R
Sbjct: 21 AFRLLV---RHEPGGLPAGEISNHLAIPANTLSSHLGVLTRAGLIRSER 66


>gi|220921624|ref|YP_002496925.1| IclR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946230|gb|ACL56622.1| transcriptional regulator, IclR family [Methylobacterium nodulans
           ORS 2060]
          Length = 297

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR------GG 63
           G+ +L   A     P  +S +A+   +S     + L  L+ AG+ +   G        G 
Sbjct: 41  GLHLLASLAACGG-PVPLSAVAQRAGVSPSQAHRYLSSLMAAGMAKQDPGTGFYDLDAGA 99

Query: 64  VRLCRPA---------DQITILDVVKAT 82
           +RL   A           +T +D  +AT
Sbjct: 100 IRLGLAALARIDVFARADVTFMDFARAT 127


>gi|111225428|ref|YP_716222.1| MarR family transcriptional regulator [Frankia alni ACN14a]
 gi|111152960|emb|CAJ64708.1| Putative MarR-family transcriptional regulator [Frankia alni
          ACN14a]
          Length = 173

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL+  A   +   R+S++A+A  +S   L +++  L + G+V 
Sbjct: 57 VLVQLAEAPNRELRMSELAQAVLLSRSGLTRLVDRLEREGLVT 99


>gi|119715528|ref|YP_922493.1| regulatory proteins, IclR [Nocardioides sp. JS614]
 gi|119536189|gb|ABL80806.1| regulatory protein, IclR [Nocardioides sp. JS614]
          Length = 226

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++  D G+RVL   A  +D    ++++A    ++   +++++  L +  +V 
Sbjct: 20 SQTLDRGLRVLDVLARASDG-LTVTELAARLEVNRTVVYRLVSTLEQHALVR 70


>gi|70999217|ref|XP_754330.1| O-methyltransferase GliM-like [Aspergillus fumigatus Af293]
 gi|66851967|gb|EAL92292.1| O-methyltransferase GliM-like, putative [Aspergillus fumigatus
           Af293]
 gi|159127347|gb|EDP52462.1| O-methyltransferase GliM2 [Aspergillus fumigatus A1163]
          Length = 433

 Score = 34.2 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 7   TDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGI 53
           ++Y        A H     P  ISQ+AEA  + E  LF+I++ L + G 
Sbjct: 86  SEYA------LADHVQKLQPCSISQLAEATGLHEQGLFQIVRYLREMGY 128


>gi|325262860|ref|ZP_08129596.1| transcriptional regulator, GntR family [Clostridium sp. D5]
 gi|324031954|gb|EGB93233.1| transcriptional regulator, GntR family [Clostridium sp. D5]
          Length = 122

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L ++G+V + R
Sbjct: 31 GDKLPSVRDLALDASVNPNTMQKALSELERSGLVYSQR 68


>gi|297530094|ref|YP_003671369.1| GntR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297253346|gb|ADI26792.1| transcriptional regulator, GntR family [Geobacillus sp. C56-T3]
          Length = 237

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          D      ++A     S   + K L  L + G ++ ++G+ 
Sbjct: 26 DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 65


>gi|320010052|gb|ADW04902.1| regulatory protein ArsR [Streptomyces flavogriseus ATCC 33331]
          Length = 370

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +R+    A     P    ++A++  I+   + + L  L KAG+  T R  RG   L
Sbjct: 299 MRICRNLAR---SPYTTGELADSLGITPPEVSRHLGVLKKAGLATTRR--RGRYVL 349


>gi|256374947|ref|YP_003098607.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919250|gb|ACU34761.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
           43827]
          Length = 167

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           VL+  A   D   R++++A+A  +S   + +++  L ++G+V   R
Sbjct: 65  VLVQLAERPDRRMRMTELADAVLLSRSGVTRLVDRLERSGLVLRER 110


>gi|297198658|ref|ZP_06916055.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|197714593|gb|EDY58627.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 349

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
            + +A+   ++   + + +  L + G  V    G  GG +L   A+
Sbjct: 21 SGADLADRLGVTARTVRRDVDRLRELGYPVNASPGTGGGYQLGAGAE 67


>gi|167464080|ref|ZP_02329169.1| hypothetical protein Plarl_16234 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 445

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRLCR 68
          +L Y  ++       + +IA+   +SE   ++ ++     G+V T         G +L +
Sbjct: 15 ILRYIESLKLGTKISVRKIADQLEVSEGTAYRAIKEAENLGLVSTKERVGTVRVGKKLRQ 74

Query: 69 PADQITILDVVKATEESF 86
            D++T  +VV   +   
Sbjct: 75 NIDKLTFGEVVNIVDGEV 92


>gi|220925323|ref|YP_002500625.1| AsnC family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219949930|gb|ACL60322.1| transcriptional regulator, AsnC family [Methylobacterium nodulans
          ORS 2060]
          Length = 159

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++   +  D     +++A+   +S     + +Q L + G +  VR
Sbjct: 17 MLRL-LQEDGRLTNAELAQRVNLSPATCHRRMQRLFRGGFITGVR 60


>gi|163739261|ref|ZP_02146672.1| transcriptional regulator, DeoR family protein [Phaeobacter
          gallaeciensis BS107]
 gi|161387331|gb|EDQ11689.1| transcriptional regulator, DeoR family protein [Phaeobacter
          gallaeciensis BS107]
          Length = 272

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              R  ++A+   +SE  + + ++ L K G+V+ V    GG  L  P
Sbjct: 16 GGSARSGELAKVLGVSEETVRRTIKALAKQGLVQRV---HGGAYLSGP 60


>gi|120610773|ref|YP_970451.1| ArsR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120589237|gb|ABM32677.1| transcriptional regulator, ArsR family [Acidovorax citrulli
           AAC00-1]
          Length = 255

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R  M  A+ +       ++A A  IS     + L  LV AG++    +GR     L    
Sbjct: 29  RAAMLLALMDGRALTARELAGAARISAATASRHLALLVDAGLLAVRSQGRHRYHALAG-- 86

Query: 71  DQITILDVVKATEESFFVA 89
                 DV +  E      
Sbjct: 87  -----ADVARLLEGLMQFT 100


>gi|21322789|dbj|BAB97418.1| Predicted transcriptional regulator containing an HTH domain and an
           uncharacterized domain shared with the mammalian protein
           Schlafen [Corynebacterium glutamicum ATCC 13032]
          Length = 471

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 18  AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           AI+   P  I +IA     +   L  +L+ LV+AG+V   
Sbjct: 419 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVAT 458


>gi|57642048|ref|YP_184526.1| hypothetical protein TK2113 [Thermococcus kodakarensis KOD1]
 gi|57160372|dbj|BAD86302.1| hypothetical protein, conserved [Thermococcus kodakarensis KOD1]
          Length = 306

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 26/89 (29%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----------ETV 57
           +Y I  LM   +  D    I++IAE    S   +  ++  L + GI+           + 
Sbjct: 153 EYAI--LMDI-LKWDARTPITEIAEKLGKSRPTVRYMINRLKEKGILINFVPLPDMNVSD 209

Query: 58  RGRRGGVRLCRPAD----------QITIL 76
           RG  G   + +  D          +IT+ 
Sbjct: 210 RGIIG---IAKELDEEVLKRFNDYEITVG 235


>gi|56420155|ref|YP_147473.1| GntR family transcriptional regulator [Geobacillus kaustophilus
          HTA426]
 gi|56379997|dbj|BAD75905.1| transcriptional regulator (GntR family) [Geobacillus kaustophilus
          HTA426]
          Length = 125

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 21/49 (42%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          V+      +D    +  +A+   ++   + K  + L + G + ++ G+ 
Sbjct: 24 VIRELWRPHDQLPSVRTMAKQLMVNPNTIQKAYRELERDGWIYSIPGKG 72


>gi|315646635|ref|ZP_07899752.1| transcriptional regulator, ArsR family protein [Paenibacillus
           vortex V453]
 gi|315277961|gb|EFU41282.1| transcriptional regulator, ArsR family protein [Paenibacillus
           vortex V453]
          Length = 305

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +R+L Y A   D P  +S++A         L   L  L  AG++ + 
Sbjct: 232 LRLLRYIA---DEPKAVSEMATELGQPYEDLMHHLMILRAAGLLRSH 275


>gi|283786778|ref|YP_003366643.1| ArsR-family transcriptional regulator [Citrobacter rodentium
          ICC168]
 gi|282950232|emb|CBG89868.1| ArsR-family transcriptional regulator [Citrobacter rodentium
          ICC168]
          Length = 99

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ C +         ++A+   +S     + L  + + G++E+ R
Sbjct: 26 RLLILCMLCGSPGTSAGELAKITGLSPSATSQHLARMREEGLIESRR 72


>gi|257469212|ref|ZP_05633306.1| GntR family transcriptional regulator [Fusobacterium ulcerans
          ATCC 49185]
 gi|317063460|ref|ZP_07927945.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313689136|gb|EFS25971.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 462

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          Y ++ ++           I ++A+   +S   + K  + L K G +  +RG  G  
Sbjct: 19 YKLKEMIENGEIKGKIFSIRELAKNLGVSISTVVKAYEQLEKNGYIY-LRGGSGAY 73


>gi|239945796|ref|ZP_04697733.1| transcription regulator ArsR [Streptomyces roseosporus NRRL
          15998]
 gi|239992267|ref|ZP_04712931.1| transcription regulator ArsR [Streptomyces roseosporus NRRL
          11379]
          Length = 126

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I +   +S+  +   L+ L +AG++ + R
Sbjct: 50 LRLFSKVASHPGGEACVCDI-QDVGVSQPTVSHHLKKLREAGLLTSQR 96


>gi|271968295|ref|YP_003342491.1| helix-turn-helix type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270511470|gb|ACZ89748.1| helix-turn-helix, type 11 domain-containing protein
          [Streptosporangium roseum DSM 43021]
          Length = 233

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 6  RTD--YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG 62
          RTD  Y +  +   +  +       ++A    +S   + + +  L +AG+ V    G RG
Sbjct: 3  RTDRLYAL--VEELSAVSPRFRSARELAAGFEVSVRTVERDVSALQQAGVPVHAEPGGRG 60

Query: 63 GVRLCRP 69
             L R 
Sbjct: 61 SYALGRS 67


>gi|158424673|ref|YP_001525965.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158331562|dbj|BAF89047.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 413

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           R L+    +   P  +++IA    +S   L ++   
Sbjct: 298 RALLLMEQNLAEPLSVAEIARRLAVSPRQLERLFAE 333


>gi|154252913|ref|YP_001413737.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
 gi|154156863|gb|ABS64080.1| regulatory protein ArsR [Parvibaculum lavamentivorans DS-1]
          Length = 113

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRR 61
          + P  + +IAEA  +S   +   L+ L  A +V    RG++
Sbjct: 47 EGPRSVGEIAEALGLSLSLVSHHLRLLRAARLVTADRRGKQ 87


>gi|27366042|ref|NP_761570.1| glycerol-3-phosphate regulon repressor [Vibrio vulnificus CMCP6]
 gi|27362242|gb|AAO11097.1| Glycerol-3-phosphate regulon repressor, DeoR family [Vibrio
          vulnificus CMCP6]
          Length = 257

 Score = 34.2 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L
Sbjct: 14 ILAYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISL 63


>gi|307330666|ref|ZP_07609805.1| putative transcriptional regulator, ArsR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883727|gb|EFN14774.1| putative transcriptional regulator, ArsR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 371

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                 S++A    +S     +    L +AG+V T+R
Sbjct: 288 GGGCTTSELARRVGVSLASASQHASVLREAGLVHTLR 324


>gi|297197993|ref|ZP_06915390.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|297146957|gb|EDY59038.2| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 185

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
          +  D  + VL   A   +      ++AEA  + +   F++L  L   G+VE   G RG  
Sbjct: 17 QSVDRAVTVLEILAQRGEAGVS--EVAEAIDVHKSTAFRLLGALEAHGMVE-QEGERGKY 73

Query: 65 RLC 67
          RL 
Sbjct: 74 RLG 76


>gi|134133938|gb|ABO61027.1| putative transcriptional regulator IclR-type [Pseudomonas
          reinekei]
          Length = 265

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R +   +   H    + +S++A+   +S+    +IL  L + G V+
Sbjct: 19 RCMAVISSYTHQSAASTLSEVAKRTGLSKPTARRILLTLEQLGYVK 64


>gi|239627300|ref|ZP_04670331.1| sigma-54 dependent transcriptional regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517446|gb|EEQ57312.1| sigma-54 dependent transcriptional regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 698

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 41  LFKILQPLVKAGIVETVRGRRG 62
           + K L  L   G V +VRGR G
Sbjct: 653 VRKALSKLSAHGFVRSVRGRGG 674


>gi|251799263|ref|YP_003013994.1| GntR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546889|gb|ACT03908.1| transcriptional regulator, GntR family [Paenibacillus sp. JDR-2]
          Length = 129

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 11  IRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
           +R L+      +      I ++A+    S + + ++ Q L   G++ T +G   G  + R
Sbjct: 23  LRALIVSGQLEEGILLPSIRELAQLLKCSVITVRRVYQDLENEGLLRTKQGT--GTYVAR 80

Query: 69  ----PADQITILDVVKATE---ESFFVAECFASH 95
                 D+  +  V +A E   E+  + +C    
Sbjct: 81  IEQNAMDRYRLDAVTEALEAAVEAGKLVQCTREE 114


>gi|163742021|ref|ZP_02149410.1| transcriptional regulator, DeoR family protein [Phaeobacter
          gallaeciensis 2.10]
 gi|161384742|gb|EDQ09122.1| transcriptional regulator, DeoR family protein [Phaeobacter
          gallaeciensis 2.10]
          Length = 278

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
              R  ++A+   +SE  + + ++ L K G+V+ V    GG  L  P
Sbjct: 22 GGSARSGELAKVLGVSEETVRRTIKALAKQGLVQRV---HGGAYLSGP 66


>gi|126724951|ref|ZP_01740794.1| Pyruvate dehydrogenase complex repressor [Rhodobacterales
          bacterium HTCC2150]
 gi|126706115|gb|EBA05205.1| Pyruvate dehydrogenase complex repressor [Rhodobacterales
          bacterium HTCC2150]
          Length = 255

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 11/61 (18%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
             +      ++AE   +S   L   +  L   G++ +  G             I + DV
Sbjct: 29 RPGERLPAERELAERLGVSRPSLRDAIAQLQNDGLLSSKAGSG-----------IFVADV 77

Query: 79 V 79
          +
Sbjct: 78 L 78


>gi|126664347|ref|ZP_01735331.1| regulatory protein GntR, HTH [Marinobacter sp. ELB17]
 gi|126630673|gb|EBA01287.1| regulatory protein GntR, HTH [Marinobacter sp. ELB17]
          Length = 263

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A+           +AE   +S   L + +Q LV  G++ + +G  
Sbjct: 27 ALKPGERLPAERALAEQFGVSRPSLREAVQKLVTKGLLISRQGGG 71


>gi|167033692|ref|YP_001668923.1| AraC family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860180|gb|ABY98587.1| transcriptional regulator, AraC family [Pseudomonas putida GB-1]
          Length = 351

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 10  GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
           G+R  L     + + P  I +IAE   +S   L ++ +  V+A
Sbjct: 238 GVRLALELMHANIEDPIGIDEIAEHAGLSRRHLERLFRRHVQA 280


>gi|126465361|ref|YP_001040470.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014184|gb|ABN69562.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1]
          Length = 612

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           R+L+     +  P  +  I+E   +    + K ++ L   G+V
Sbjct: 436 RILVVL---SGKPMPLGWISEITGMPRDMVEKAIRRLEDKGLV 475


>gi|331092284|ref|ZP_08341112.1| hypothetical protein HMPREF9477_01755 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401716|gb|EGG81295.1| hypothetical protein HMPREF9477_01755 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 289

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVR 58
           L Y + H      I  IA+   IS  +L K+      L  A  +   R
Sbjct: 189 LQYVSEHFQEKILIPDIAKELNISTRYLGKLFSRHMNLTLANYINIYR 236


>gi|294023753|ref|YP_003547072.1| GntR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292677533|dbj|BAI99049.1| GntR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 205

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          AI   +P  + ++AE   +S   L   +  LV   I+E +    GG +L  P+ + ++ D
Sbjct: 23 AIKPGWPLNLQRLAEEFNVSVSPLRDAMHRLVGERIIEAL--PVGGFQLPIPSKE-SLHD 79

Query: 78 VV 79
          + 
Sbjct: 80 LY 81


>gi|271965749|ref|YP_003339945.1| MarR family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270508924|gb|ACZ87202.1| hypothetical protein Sros_4315 [Streptosporangium roseum DSM
          43021]
          Length = 171

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           D P R++ +A    +S+  + +++  L + G+VE
Sbjct: 54 GDGPMRLTDLARTEQVSQPGITQLVTRLERDGLVE 88


>gi|260583440|ref|ZP_05851188.1| biotin-[acetyl-CoA-carboxylase] ligase [Granulicatella elegans
          ATCC 700633]
 gi|260158066|gb|EEW93134.1| biotin-[acetyl-CoA-carboxylase] ligase [Granulicatella elegans
          ATCC 700633]
          Length = 331

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
          VL+Y   ++  P    ++A A   S   ++K +Q L K G  +++      G  L   
Sbjct: 7  VLLYLQENSGEPISGEKMALALNKSRTSIWKAIQSLKKEGYAIDSS--TNKGYTLSEN 62


>gi|240949454|ref|ZP_04753794.1| fatty acid metabolism regulator [Actinobacillus minor NM305]
 gi|240296027|gb|EER46688.1| fatty acid metabolism regulator [Actinobacillus minor NM305]
          Length = 241

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++AE   ++   L ++LQ L + G ++   G+
Sbjct: 39 RELAERIGVTRTTLREVLQRLARDGWLQIQHGK 71


>gi|239980319|ref|ZP_04702843.1| ArsR family transcriptional regulator [Streptomyces albus J1074]
          Length = 315

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +R L             SQ+A    +S     +    L ++G++ T R
Sbjct: 238 ALRALT-------STCTTSQLAARLGVSPGSASQHASILRESGLITTRR 279


>gi|257067966|ref|YP_003154221.1| putative transcriptional regulator [Brachybacterium faecium DSM
           4810]
 gi|256558784|gb|ACU84631.1| predicted transcriptional regulator [Brachybacterium faecium DSM
           4810]
          Length = 120

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           + ++      +     +  +AE   +S     + L  L  AGIV   R  R         
Sbjct: 34  LHLVTLM---SGGRFDVGTLAEKVGLSLPTTSQHLSKLRLAGIVSARRAGRHSYYTVEDP 90

Query: 71  DQITILD-VVKAT--EESFFV 88
             +++++ + +    + S   
Sbjct: 91  HVLSLVEQIFEHIAPDGSLAP 111


>gi|256390302|ref|YP_003111866.1| IclR family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256356528|gb|ACU70025.1| transcriptional regulator, IclR family [Catenulispora acidiphila
          DSM 44928]
          Length = 257

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +RVL   A        ++++AE   +++  +  +L+ L   G+V
Sbjct: 8  AVRVLRELAA-GGPRLGVTELAERVGVAKPTVHALLRTLEGEGLV 51


>gi|269925469|ref|YP_003322092.1| iron (metal) dependent repressor, DtxR family [Thermobaculum
          terrenum ATCC BAA-798]
 gi|269789129|gb|ACZ41270.1| iron (metal) dependent repressor, DtxR family [Thermobaculum
          terrenum ATCC BAA-798]
          Length = 247

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
          MYC    + P   +++AE   +S   +  ++  + + G+V+  RG++  + L     QI 
Sbjct: 23 MYCLRRENQPLIGARLAEWLDVSPASVTGMIHRMSQEGLVQVGRGKQ--ITLTTKGWQIA 80

Query: 75 I 75
          +
Sbjct: 81 L 81


>gi|254517923|ref|ZP_05129979.1| regulatory protein GntR [Clostridium sp. 7_2_43FAA]
 gi|226911672|gb|EEH96873.1| regulatory protein GntR [Clostridium sp. 7_2_43FAA]
          Length = 127

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + +++    I+   + K    L K  IVE+++G+ 
Sbjct: 32 GDKLPSVRELSTILTINPNTVSKAYMELEKQNIVESIKGKG 72


>gi|297200628|ref|ZP_06918025.1| GntR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
 gi|297147688|gb|EDY53793.2| GntR family transcriptional regulator [Streptomyces sviceus ATCC
          29083]
          Length = 294

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +AE   +S   + ++L  L   G +E+ RG  
Sbjct: 34 RALAEEFEVSRDTIQRVLMELKTEGWIESRRGSG 67


>gi|239813179|ref|YP_002942089.1| transcriptional regulator, IclR family [Variovorax paradoxus
          S110]
 gi|239799756|gb|ACS16823.1| transcriptional regulator, IclR family [Variovorax paradoxus
          S110]
          Length = 244

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 4  TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +   D  +RVL   A  +      +++AEA  + +  L++ +  L + G V    GR
Sbjct: 8  SAHNDRALRVLSVLA-QSKSAMSAAELAEATGLVKSTLYRQIAVLRRWGFVMETDGR 63


>gi|261419945|ref|YP_003253627.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319766759|ref|YP_004132260.1| GntR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376402|gb|ACX79145.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC61]
 gi|317111625|gb|ADU94117.1| transcriptional regulator, GntR family [Geobacillus sp. Y412MC52]
          Length = 237

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          D      ++A     S   + K L  L + G ++ ++G+ 
Sbjct: 26 DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 65


>gi|254437156|ref|ZP_05050650.1| NAD dependent epimerase/dehydratase family [Octadecabacter
           antarcticus 307]
 gi|198252602|gb|EDY76916.1| NAD dependent epimerase/dehydratase family [Octadecabacter
           antarcticus 307]
          Length = 927

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 14/80 (17%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP----------LVKAGIVET-VRG 59
           + +++      D P    ++A    +    L +++            L + GI+ T   G
Sbjct: 555 VTLMLELESAYDRPIDF-ELA--MNVPLHRLDQLMTQEADAPAPTDDLDRPGILLTGATG 611

Query: 60  RRGGVRLCRPADQITILDVV 79
             GG  L + A  + + DVV
Sbjct: 612 FLGGHVLAQAARDLPVGDVV 631


>gi|206563030|ref|YP_002233793.1| IclR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198039070|emb|CAR55033.1| IclR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 250

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRLCR 68
           L+   +       ++ +A    I +  L ++L  L   G+V    GR+     G RL R
Sbjct: 13 ALLEHLVQAGDAVSLADLARDVDIPKASLHRMLASLEAGGLVIREPGRKNAYAVGPRLAR 72


>gi|182416943|ref|ZP_02948327.1| transcriptional regulatory protein [Clostridium butyricum 5521]
 gi|237667849|ref|ZP_04527833.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182379241|gb|EDT76742.1| transcriptional regulatory protein [Clostridium butyricum 5521]
 gi|237656197|gb|EEP53753.1| regulatory protein GntR, HTH [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 245

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +A++  +S   L + L  L   G+++ ++G+ 
Sbjct: 42 DLAKSLGVSRTTLRQALALLQDDGLIKNIQGKG 74


>gi|21225122|ref|NP_630901.1| transcription regulator ArsR [Streptomyces coelicolor A3(2)]
 gi|6900926|emb|CAB71918.1| putative ArsR-family transcriptional regulator [Streptomyces
           coelicolor A3(2)]
          Length = 117

 Score = 34.2 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLC 67
           +R+    A H +    +  IA+   +S+  +   L+ L +AG++ +  RG     RL 
Sbjct: 46  LRLFSKVASHPEGEACVCDIAD-VGVSQPTVSHHLKKLREAGLLLSERRGTWVYYRLA 102


>gi|328906900|gb|EGG26666.1| putative histidine utilization repressor [Propionibacterium sp.
          P08]
          Length = 237

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 18 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 58


>gi|327311906|ref|YP_004338803.1| Fis family transcriptional regulator [Thermoproteus uzoniensis
           768-20]
 gi|326948385|gb|AEA13491.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis
           768-20]
          Length = 273

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R L             +++A    +    L K L  L + G + 
Sbjct: 214 LRTL----EEGGGRMPRAELARRLGLPASTLHKHLHKLSRYGYLR 254


>gi|326334010|ref|ZP_08200239.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Nocardioidaceae bacterium Broad-1]
 gi|325948159|gb|EGD40270.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Nocardioidaceae bacterium Broad-1]
          Length = 105

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           A     P  + +IA+A  +S   + + L+ L +AG+V
Sbjct: 17 LARVAAGPCSVGEIADALPVSMAAVSQHLKVLREAGLV 54


>gi|314929497|gb|EFS93328.1| putative histidine utilization repressor [Propionibacterium acnes
          HL044PA1]
          Length = 240

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++AE   IS + + + +  LV +G++E  RG  
Sbjct: 21 GDVVPSERELAERFGISRMTVRQAVDSLVSSGMLERRRGSG 61


>gi|302669340|ref|YP_003832490.1| bifunctional biotin--acetyl-CoA-carboxylase ligase/biotin operon
          [Butyrivibrio proteoclasticus B316]
 gi|302397004|gb|ADL35908.1| bifunctional biotin--acetyl-CoA-carboxylase ligase/biotin operon
          [Butyrivibrio proteoclasticus B316]
          Length = 281

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          +VL             +++A    IS   ++K ++ L   G  +E+V     G RL +  
Sbjct: 11 KVLAMLENSRGDFVSGAEMASGLGISRNAIWKAIKELKVQGYSIESV--TNKGYRLSKDN 68

Query: 71 DQIT 74
          D I+
Sbjct: 69 DIIS 72


>gi|291546936|emb|CBL20044.1| transcriptional regulator, GntR family [Ruminococcus sp. SR1/5]
          Length = 125

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 20/89 (22%)

Query: 1  MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          M +T +      ++M  A       D    + Q+A    I+   + K    L + G V  
Sbjct: 15 MQITNQ------IIMGIATSRLHEGDTLPSVRQLASIAGINMHTVNKAYALLRQEGFVTI 68

Query: 57 VRGRRGGVRLCRPADQITI-LDVVKATEE 84
           R         R    I+I  D V+A EE
Sbjct: 69 DR---------RKGAVISIDADKVRALEE 88


>gi|302867403|ref|YP_003836040.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
 gi|302570262|gb|ADL46464.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
          Length = 108

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPADQITILD--- 77
           + P   +++AEA   S   L   L  L   G+V  V  GRR    L        + D   
Sbjct: 31  EGPGYPAELAEALGTSRQNLSNHLACLRGCGLVVAVPEGRRTRYELAEARLAHALGDLVG 90

Query: 78  VVKATEESFFVAECFASHKIDC 99
           VV A +     A C  +    C
Sbjct: 91  VVLAVD----PAACPDAADGCC 108


>gi|197119276|ref|YP_002139703.1| GntR family transcriptional regulator [Geobacter bemidjiensis
          Bem]
 gi|197088636|gb|ACH39907.1| transcriptional regulator, GntR family [Geobacter bemidjiensis
          Bem]
          Length = 240

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77
           +      ++AE   +S   + + L  L  +G+VET +G  GG     L   +  + + +
Sbjct: 31 GEKLPPERELAELFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENSAGMPLSE 88

Query: 78 VVKATEESFFV 88
          +++  +    +
Sbjct: 89 LIR-IDGDRAL 98


>gi|34498492|ref|NP_902707.1| pyruvate dehydrogenase complex repressor [Chromobacterium
          violaceum ATCC 12472]
 gi|34104347|gb|AAQ60706.1| pyruvate dehydrogenase complex repressor [Chromobacterium
          violaceum ATCC 12472]
          Length = 256

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R+L       D      Q+AE   +S   L + +Q L   G++ + +G  
Sbjct: 22 RILDGVLKPGDRLPPERQLAEEFGVSRPSLREAIQQLTSRGLLSSRQGGG 71


>gi|33592909|ref|NP_880553.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33572557|emb|CAE42137.1| probable transcriptional regulator [Bordetella pertussis Tohama
          I]
 gi|332382322|gb|AEE67169.1| transcriptional regulator [Bordetella pertussis CS]
          Length = 246

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          RVL   A     + P  ++ +AE   +++  L++ +  L + G V    G 
Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGA 62


>gi|15839886|ref|NP_334923.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|31791675|ref|NP_854168.1| GntR family transcriptional regulator [Mycobacterium bovis
           AF2122/97]
 gi|57116742|ref|NP_215008.2| GntR family transcriptional regulator [Mycobacterium tuberculosis
           H37Rv]
 gi|121636411|ref|YP_976634.1| GntR family transcriptional regulator [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148660262|ref|YP_001281785.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148821694|ref|YP_001286448.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           F11]
 gi|167970682|ref|ZP_02552959.1| hypothetical transcriptional regulatory protein, gntR-family
           [Mycobacterium tuberculosis H37Ra]
 gi|215402257|ref|ZP_03414438.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           02_1987]
 gi|215410016|ref|ZP_03418824.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425725|ref|ZP_03423644.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           T92]
 gi|215429318|ref|ZP_03427237.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|218752130|ref|ZP_03530926.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           GM 1503]
 gi|224988883|ref|YP_002643570.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253797424|ref|YP_003030425.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|254363457|ref|ZP_04979503.1| hypothetical transcriptional regulatory protein (probably
           gntR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|254549444|ref|ZP_05139891.1| transcriptional regulator, gntR-family protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185364|ref|ZP_05762838.1| transcriptional regulator, gntR-family protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199495|ref|ZP_05766986.1| transcriptional regulator, gntR-family protein [Mycobacterium
           tuberculosis T46]
 gi|260203648|ref|ZP_05771139.1| transcriptional regulator, gntR-family protein [Mycobacterium
           tuberculosis K85]
 gi|289441878|ref|ZP_06431622.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           T46]
 gi|289446039|ref|ZP_06435783.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           CPHL_A]
 gi|289552746|ref|ZP_06441956.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|289573082|ref|ZP_06453309.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           K85]
 gi|289744202|ref|ZP_06503580.1| transcriptional regulatory protein, gntR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289748987|ref|ZP_06508365.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           T92]
 gi|289752527|ref|ZP_06511905.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289760614|ref|ZP_06519992.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|294996002|ref|ZP_06801693.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           210]
 gi|297632981|ref|ZP_06950761.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           KZN 4207]
 gi|297729956|ref|ZP_06959074.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           KZN R506]
 gi|298523973|ref|ZP_07011382.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657285|ref|ZP_07814165.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039959|sp|P67740|Y505_MYCBO RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Mb0505
 gi|54042800|sp|P67739|Y494_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
           Rv0494/MT0514
 gi|13880022|gb|AAK44737.1| transcriptional regulator, GntR family [Mycobacterium tuberculosis
           CDC1551]
 gi|31617261|emb|CAD93368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|38490193|emb|CAB00955.2| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|121492058|emb|CAL70521.1| Probable transcriptional regulatory protein (probably gntR-family)
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134148971|gb|EBA41016.1| hypothetical transcriptional regulatory protein (probably
           gntR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|148504414|gb|ABQ72223.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148720221|gb|ABR04846.1| hypothetical transcriptional regulatory protein, gntR-family
           [Mycobacterium tuberculosis F11]
 gi|224771996|dbj|BAH24802.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253318927|gb|ACT23530.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           KZN 1435]
 gi|289414797|gb|EFD12037.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           T46]
 gi|289418997|gb|EFD16198.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           CPHL_A]
 gi|289437378|gb|EFD19871.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           KZN 605]
 gi|289537513|gb|EFD42091.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           K85]
 gi|289684730|gb|EFD52218.1| transcriptional regulatory protein, gntR-family [Mycobacterium
           tuberculosis 02_1987]
 gi|289689574|gb|EFD57003.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           T92]
 gi|289693114|gb|EFD60543.1| GntR family transcriptional regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289708120|gb|EFD72136.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|298493767|gb|EFI29061.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902322|gb|EGE49255.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           W-148]
 gi|328457210|gb|AEB02633.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           KZN 4207]
          Length = 242

 Score = 33.8 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84
             +AE   ++   L + L  L + G++E   G      + R  + +T   VV+A      
Sbjct: 46  RDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSG---SVVRDPEGLTHPAVVEALVRKLG 102

Query: 85  SFFVAECFASHKIDCPLVGS 104
             F+ E         PL+G 
Sbjct: 103 PDFLVELLEIRAALGPLIGR 122


>gi|332286711|ref|YP_004418622.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330430664|gb|AEC21998.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 262

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          N        + E   +S   + ++L  L  AG+VET +G  
Sbjct: 32 NSRLPTEKFMTEEYGVSRTVVREVLSRLKSAGLVETRQGSG 72


>gi|326331437|ref|ZP_08197727.1| regulatory protein [Nocardioidaceae bacterium Broad-1]
 gi|325950693|gb|EGD42743.1| regulatory protein [Nocardioidaceae bacterium Broad-1]
          Length = 246

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
           D      ++A+   ++ +   + L  L   G+V T RGR GG    R        DVVK
Sbjct: 44 GDRLPSELELAQMLGVATVTAREALVSLRAQGLVVTTRGRGGG-SFVRAPAP---GDVVK 99


>gi|297192919|ref|ZP_06910317.1| ArsR family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151557|gb|EFH31235.1| ArsR family transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 372

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 15  MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           M  + +        S++A++  IS   + + L  L KA +V T R  RG   L
Sbjct: 301 MRLSRNLGRAAYTTSELADSLGISAPEVSRHLAVLKKAKLVSTRR--RGRYVL 351


>gi|291449255|ref|ZP_06588645.1| ArsR2 [Streptomyces roseosporus NRRL 15998]
 gi|291352202|gb|EFE79106.1| ArsR2 [Streptomyces roseosporus NRRL 15998]
          Length = 118

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I +   +S+  +   L+ L +AG++ + R
Sbjct: 42 LRLFSKVASHPGGEACVCDI-QDVGVSQPTVSHHLKKLREAGLLTSQR 88


>gi|226954357|ref|ZP_03824821.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226834893|gb|EEH67276.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 477

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           I ++       +AE   I++  L K L  L  AG +E V G RG
Sbjct: 422 IQHNPKVSYRSLAEQLGINQSALQKHLNHLKDAGWLERVGGTRG 465


>gi|221196257|ref|ZP_03569304.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD2M]
 gi|221202930|ref|ZP_03575949.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD2]
 gi|221176864|gb|EEE09292.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD2]
 gi|221182811|gb|EEE15211.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD2M]
          Length = 224

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58
           +A     S   L ++L  L + G+V  VR
Sbjct: 38 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 67


>gi|218677444|ref|ZP_03525341.1| GntR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 149

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +A     S + + K+L  L KAG++E  R ++ G  + +P  Q  +L++
Sbjct: 37 DLATQYDCSRMTVNKVLTQLAKAGLIE--RRKKSGSFVTQPQAQSAVLEI 84


>gi|218533233|ref|YP_002424049.1| Crp/Fnr family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525536|gb|ACK86121.1| transcriptional regulator, Crp/Fnr family [Methylobacterium
           chloromethanicum CM4]
          Length = 299

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P   + +A+   +S + + ++LQ L + G++E
Sbjct: 226 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 257


>gi|222479504|ref|YP_002565741.1| transcriptional regulator, TrmB [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452406|gb|ACM56671.1| transcriptional regulator, TrmB [Halorubrum lacusprofundi ATCC
           49239]
          Length = 281

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI--------- 73
                  +AEA  I +  ++ +L  L + G V+ + GR    +      +I         
Sbjct: 29  GRTTAPDLAEATGIPKARIYGVLDSLSEGGYVKIIPGRPKRYQ-PHDPSEIAERAVANRR 87

Query: 74  ----TILDVVKATEESF 86
                  + V+A EESF
Sbjct: 88  HAYERFREDVEAVEESF 104


>gi|116249023|ref|YP_764864.1| ROK family transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115253673|emb|CAK12066.1| putative ROK family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 426

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
          R ++   IH   P   ++IA     ++  + +I+  L+  G++   R R G
Sbjct: 40 RAVVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG 90


>gi|115351135|ref|YP_772974.1| IclR family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115281123|gb|ABI86640.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          AMMD]
          Length = 274

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|329945152|ref|ZP_08293020.1| putative acetate operon repressor [Actinomyces sp. oral taxon 170
          str. F0386]
 gi|328529351|gb|EGF56266.1| putative acetate operon repressor [Actinomyces sp. oral taxon 170
          str. F0386]
          Length = 278

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRG 59
          +  D  + VL   A  +   + ++ +A+   +    + +IL+ L   G V +T RG
Sbjct: 35 QSVDRALVVLEELA-KDGTSSSLALLAQRTGLPGPTVHRILRTLASRGYVIKTARG 89


>gi|326800800|ref|YP_004318619.1| DeoR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551564|gb|ADZ79949.1| transcriptional regulator, DeoR family [Sphingobacterium sp. 21]
          Length = 249

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          I N    ++ +++E   +SE  + + ++ L   GIV+ VRG
Sbjct: 14 IKNKQSAQLKELSELLNVSEDTVRRDIKELSDLGIVKAVRG 54


>gi|298290983|ref|YP_003692922.1| ArsR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927494|gb|ADH88303.1| transcriptional regulator, ArsR family [Starkeya novella DSM 506]
          Length = 118

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          R+L+ CA+  D  + + ++ +   I +  L + L  L  AG++   + G++   RL  P
Sbjct: 33 RLLVACALV-DGEHSVRELEDMLGIRQPGLSQQLAGLRAAGLIIGRKEGKQVFYRLADP 90


>gi|261825953|gb|ACX94481.1| YcxD [Bacillus subtilis]
          Length = 444

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
             D    I Q++    IS+  + + LQ L K  ++ +V   + G  + + 
Sbjct: 21 QEGDRLPSIRQLSARYQISKSTVIRALQELEKRHLIYSV--PKSGYYIVKK 69


>gi|302560143|ref|ZP_07312485.1| MarR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302477761|gb|EFL40854.1| MarR-family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 173

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9  YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          YG+  L+  A   D   R++++A +  I+   L   +  L K+G V 
Sbjct: 55 YGL--LVKLAEAPDNRLRMTELAMSAKITRSRLSHAVARLEKSGWVR 99


>gi|256394427|ref|YP_003115991.1| hypothetical protein Caci_5291 [Catenulispora acidiphila DSM
          44928]
 gi|256360653|gb|ACU74150.1| hypothetical protein Caci_5291 [Catenulispora acidiphila DSM
          44928]
          Length = 126

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           VL+  A +     RI +++ A  I+E     I+  LVKAG V   R
Sbjct: 36 HVLVEIARNPQA--RIRELSVAAGITERATAAIISDLVKAGYVARSR 80


>gi|305681465|ref|ZP_07404272.1| transcriptional regulator, ArsR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659670|gb|EFM49170.1| transcriptional regulator, ArsR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 142

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQ 72
           +++     D+     ++ E    S+  + + L+ L KA IVE  R GR    RL  PA  
Sbjct: 54  IIHLLAQRDHFV--YELVETLGSSQPLISQHLRILRKANIVEHHRSGRLITYRLRCPAA- 110

Query: 73  ITILDVVKATEESFFVAECFASHKID 98
              LD+++          C++    D
Sbjct: 111 ---LDIIE-----LAATTCYSDRHHD 128


>gi|253581224|ref|ZP_04858481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847501|gb|EES75474.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 255

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
            + Y  +H   P  + + AEA  IS  +L ++ + 
Sbjct: 153 AVKYIHLHLHVPVTLEETAEAAGISASYLSRLFKK 187


>gi|284033070|ref|YP_003383001.1| ArsR family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283812363|gb|ADB34202.1| transcriptional regulator, ArsR family [Kribbella flavida DSM
          17836]
          Length = 119

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  A   +Y      +A+   +S     + L  L  AGI+   R
Sbjct: 31 LVSLAAQGEYDVGT--LADRAGVSIATASQHLGKLRLAGIITARR 73


>gi|218264662|ref|ZP_03478425.1| hypothetical protein PRABACTJOHN_04131 [Parabacteroides johnsonii
          DSM 18315]
 gi|218221849|gb|EEC94499.1| hypothetical protein PRABACTJOHN_04131 [Parabacteroides johnsonii
          DSM 18315]
          Length = 248

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + +L   A   D    +S+IA    ++      IL+ LV    VE   G + G +L 
Sbjct: 8  ALNILEILAQEPDKEFGLSEIATTVELNAGTCANILKTLVYRNYVE-QSGTKKGYKLG 64


>gi|163734054|ref|ZP_02141495.1| transcriptional regulator, GntR family, putative [Roseobacter
          litoralis Och 149]
 gi|161392590|gb|EDQ16918.1| transcriptional regulator, GntR family, putative [Roseobacter
          litoralis Och 149]
          Length = 252

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           +IA    +S + + K +Q L +AG++   +G   G  +    +QI
Sbjct: 47 REIAAITDLSRVTVRKAIQSLAEAGVIVQKQGS--GSFIASKPEQI 90


>gi|163797383|ref|ZP_02191335.1| putative GntR family transcriptional regulator [alpha
          proteobacterium BAL199]
 gi|159177302|gb|EDP61859.1| putative GntR family transcriptional regulator [alpha
          proteobacterium BAL199]
          Length = 272

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 10 GIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          GIR L++  A           +AE   +S   +   L  L + G++E +    GG    R
Sbjct: 22 GIRDLVFSAAFAPGERLSEPVLAERLGLSRTPIRAALARLEQEGLLEII--PSGGYTTRR 79

Query: 69 PADQITILDVVKATE 83
                  +V+ A E
Sbjct: 80 FPAS----EVMDAIE 90


>gi|86741407|ref|YP_481807.1| ArsR family transcriptional regulator [Frankia sp. CcI3]
 gi|86568269|gb|ABD12078.1| transcriptional regulator, ArsR family [Frankia sp. CcI3]
          Length = 111

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           IR  +  A+  D P   + +AEA  IS   L   L  L   G+V  V  GRR    L   
Sbjct: 22  IRARLLLALR-DSPAHPADLAEAMGISRSRLSNHLACLRGCGLVVAVPVGRRTRYELA-- 78

Query: 70  ADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
                +    +A +E              CP   
Sbjct: 79  --DARLG---RAIDELRAAV-IALRQDTGCPDAA 106


>gi|86137241|ref|ZP_01055819.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. MED193]
 gi|85826565|gb|EAQ46762.1| pyruvate dehydrogenase complex repressor [Roseobacter sp. MED193]
          Length = 284

 Score = 33.8 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 11/59 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
            +      ++AE   +S   L   +  L + G++    G             I + DV+
Sbjct: 59  GERLPSERELAERLGVSRPSLRDAIAELQEGGLLTAKAGSG-----------IFVADVL 106


>gi|330466614|ref|YP_004404357.1| regulatory protein marr [Verrucosispora maris AB-18-032]
 gi|328809585|gb|AEB43757.1| regulatory protein marr [Verrucosispora maris AB-18-032]
          Length = 154

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +L+  +   +   R+S++A+A   S   L   +  L  AG V 
Sbjct: 48 ILVRLSEAPERRLRMSELADATGSSRSRLSHAVTRLEAAGWVR 90


>gi|322383894|ref|ZP_08057634.1| hypothetical protein PL1_3434 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151609|gb|EFX44689.1| hypothetical protein PL1_3434 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 437

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG---GVRLCR 68
          +L Y  ++       + +IA+   +SE   ++ ++     G+V T         G +L +
Sbjct: 7  ILRYIESLKLGTKISVRKIADQLEVSEGTAYRAIKEAENLGLVSTKERVGTVRVGKKLRQ 66

Query: 69 PADQITILDVVKATEESF 86
            D++T  +VV   +   
Sbjct: 67 NIDKLTFGEVVNIVDGEV 84


>gi|319647138|ref|ZP_08001363.1| hypothetical protein HMPREF1012_02402 [Bacillus sp. BT1B_CT2]
 gi|317390785|gb|EFV71587.1| hypothetical protein HMPREF1012_02402 [Bacillus sp. BT1B_CT2]
          Length = 315

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          ++   ++      + ++A    +S+  + + LQ L + G+ + +  G  GG +
Sbjct: 10 MIMM-VNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQ 61


>gi|307325332|ref|ZP_07604535.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889136|gb|EFN20119.1| transcriptional regulator, IclR family [Streptomyces
          violaceusniger Tu 4113]
          Length = 267

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          + +L   A   + P R+ ++AE   +    ++ +L+ L+  G V T
Sbjct: 20 VELLELLAARGEQPARLRELAEELRVPRSSMYALLKTLIDRGWVRT 65


>gi|300788878|ref|YP_003769169.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299798392|gb|ADJ48767.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 231

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           P     +A+   +S   + + +  L ++G  +    GR GG  L + 
Sbjct: 23 RPRSARWLADRFEVSVRTVERDISALQQSGTPIYAEAGRTGGYCLDKA 70


>gi|288931328|ref|YP_003435388.1| iron (metal) dependent repressor, DtxR family [Ferroglobus
          placidus DSM 10642]
 gi|288893576|gb|ADC65113.1| iron (metal) dependent repressor, DtxR family [Ferroglobus
          placidus DSM 10642]
          Length = 192

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +Y ++++       +   R  +IA+   +    + ++L  L K G V+       GV L 
Sbjct: 6  EY-LKIIYDIQRSKNRLVRTGEIAKKLKVKPASVTEMLAKLQKEGYVDYQ--PYKGVTLT 62

Query: 68 RPADQI 73
          +  ++I
Sbjct: 63 KKGEEI 68


>gi|302545649|ref|ZP_07297991.1| AsnC family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302463267|gb|EFL26360.1| AsnC family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 116

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          RVL   A +++   RI  IA  C ++E  + KI+  L + G +  +R
Sbjct: 19 RVLAAIADNHNA--RIRDIAAHCRLTERAVQKIISDLERDGYLSHIR 63


>gi|237798194|ref|ZP_04586655.1| transcriptional regulator GntR [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021046|gb|EGI01103.1| transcriptional regulator GntR [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 249

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R+L+   +        + +AE+  IS   L +  + L + G++        GV + +P  
Sbjct: 50  RMLVEGELVPGQRLSEATLAESLQISRNTLREAFRILTREGLLTHE--PNRGVTVAKP-- 105

Query: 72  QI-TILDVVKA 81
            I +I+D+ + 
Sbjct: 106 DIASIIDIYRI 116


>gi|269124078|ref|YP_003306655.1| transcriptional regulator, GntR family [Streptobacillus
          moniliformis DSM 12112]
 gi|268315404|gb|ACZ01778.1| transcriptional regulator, GntR family [Streptobacillus
          moniliformis DSM 12112]
          Length = 240

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D       +++   +S   +   L  L K G +  V+G+ 
Sbjct: 25 MPGDRLESERSLSQRYGVSRNTIRSTLNLLEKDGYIFKVQGKG 67


>gi|219848069|ref|YP_002462502.1| IclR family transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219542328|gb|ACL24066.1| transcriptional regulator, IclR family [Chloroflexus aggregans
          DSM 9485]
          Length = 256

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66
             VL   A  +D    +S+++E   +    + ++L  L   G V    + R    G RL
Sbjct: 10 AFDVLEALAQADDD-LSVSELSEQLDLPLATVHRLLSSLAARGYVTQEPSTRRYGPGPRL 68

Query: 67 ----CRPADQITILDVVKA 81
               R A      D+++ 
Sbjct: 69 LEIAARAAQSRRF-DLIRI 86


>gi|33596207|ref|NP_883850.1| transcriptional regulator [Bordetella parapertussis 12822]
 gi|33601618|ref|NP_889178.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33573210|emb|CAE36865.1| probable transcriptional regulator [Bordetella parapertussis]
 gi|33576055|emb|CAE33134.1| probable transcriptional regulator [Bordetella bronchiseptica
          RB50]
          Length = 245

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          RVL   A     + P  ++ +AE   +++  L++ +  L + G V    G 
Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGA 62


>gi|28895234|ref|NP_801584.1| transcriptional repressor CodY [Streptococcus pyogenes SSI-1]
 gi|28810480|dbj|BAC63417.1| putative transcriptional pleiotropic repressor [Streptococcus
           pyogenes SSI-1]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|325294110|ref|YP_004279974.1| GntR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325061963|gb|ADY65654.1| transcriptional regulator, GntR family [Agrobacterium sp. H13-3]
          Length = 238

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D       +A+   +S   + + +  L   G VET +G  
Sbjct: 34 GDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGVG 74


>gi|311898319|dbj|BAJ30727.1| putative GntR family transcriptional regulator [Kitasatospora
          setae KM-6054]
          Length = 115

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D      ++AEA  ++   + + L+ L   G++E  RGR 
Sbjct: 31 RPGDRLPSAKELAEALDVNVNTVLRGLRDLRDDGLLEFRRGRG 73


>gi|302672168|ref|YP_003832128.1| GntR family transcriptional regulator [Butyrivibrio
          proteoclasticus B316]
 gi|302396641|gb|ADL35546.1| transcriptional regulator GntR family [Butyrivibrio
          proteoclasticus B316]
          Length = 363

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++ +        ++ +   +S   +   +Q L + G++E+ RG  
Sbjct: 23 SLKSGEKIPSENELCDMFGLSRQTIRHAIQKLSEEGLLESRRGSG 67


>gi|111019365|ref|YP_702337.1| IclR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818895|gb|ABG94179.1| transcriptional regulator, IclR family protein [Rhodococcus
          jostii RHA1]
 gi|194277410|gb|ACF39363.1| transcriptional regulator [Rhodococcus sp. DK17]
          Length = 256

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +  A     PN  ++++A    +S   + +IL  L K G V    G  G   L      +
Sbjct: 18 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 72

Query: 74 TILD 77
          +I  
Sbjct: 73 SIGQ 76


>gi|94994537|ref|YP_602635.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS10750]
 gi|94548045|gb|ABF38091.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS10750]
          Length = 153

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98


>gi|71903628|ref|YP_280431.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS6180]
 gi|94990614|ref|YP_598714.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS10270]
 gi|71802723|gb|AAX72076.1| transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS6180]
 gi|94544122|gb|ABF34170.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS10270]
          Length = 153

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98


>gi|14590082|ref|NP_142146.1| transcriptional regulator [Pyrococcus horikoshii OT3]
 gi|18202075|sp|O57880|REG3_PYRHO RecName: Full=Uncharacterized HTH-type transcriptional regulator
          PH0140
 gi|3256526|dbj|BAA29209.1| 158aa long hypothetical transcriptional regulator [Pyrococcus
          horikoshii OT3]
          Length = 158

 Score = 33.8 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R ++   +  D     S+I+    + E  +   +  LVK G++ 
Sbjct: 17 RAILRL-LQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIR 59


>gi|329116322|ref|ZP_08245039.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus parauberis NCFD 2020]
 gi|326906727|gb|EGE53641.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus parauberis NCFD 2020]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|312878958|ref|ZP_07738758.1| transcriptional regulator, GntR family [Aminomonas paucivorans
          DSM 12260]
 gi|310782249|gb|EFQ22647.1| transcriptional regulator, GntR family [Aminomonas paucivorans
          DSM 12260]
          Length = 221

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +H   P   +++A+   IS   + + L+ L + G V++V G+ 
Sbjct: 27 LHEGEPLSENRLAQELAISRTPIREALRNLEQDGFVKSVPGKG 69


>gi|301301095|ref|ZP_07207254.1| transcriptional regulator, ArsR family [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|300851307|gb|EFK79032.1| transcriptional regulator, ArsR family [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 104

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64
           T Y I  L+Y     +    +S+I     +S+  +   L+ L + G+V   R G+R   
Sbjct: 27 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 81

Query: 65 RLC 67
           L 
Sbjct: 82 SLA 84


>gi|296533120|ref|ZP_06895753.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296266548|gb|EFH12540.1| ArsR family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 103

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
          R+L+ CA+       + ++     I +  L + L  L  AG+V T R G+    RL 
Sbjct: 25 RLLIACALVEGER-SVGELEAMLGIRQPGLSQQLAGLRAAGLVATRRSGKAVFYRLA 80


>gi|239934253|ref|ZP_04691206.1| putative arsenic resistance operon repressor ArsR [Streptomyces
          ghanaensis ATCC 14672]
          Length = 118

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A H      +  +     +S+  +   L+ L +AG+V + R
Sbjct: 39 LRLLSLIASHAGGEACVCDLIGPFDVSQPTISHHLKVLREAGLVGSER 86


>gi|227504033|ref|ZP_03934082.1| ArsR family transcriptional regulator [Corynebacterium striatum
          ATCC 6940]
 gi|227199363|gb|EEI79411.1| ArsR family transcriptional regulator [Corynebacterium striatum
          ATCC 6940]
          Length = 108

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + +L   A     P  ++ + ++  +S+  +   L+ L +AG++   R
Sbjct: 37 LSLLSQLATEGCGPVSVNDLTKSSGLSQPTVSHHLKKLTEAGLLTKER 84


>gi|227495824|ref|ZP_03926135.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834646|gb|EEH67029.1| transcriptional regulator [Actinomyces urogenitalis DSM 15434]
          Length = 385

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +  ++ +  P   +++A +  +S   L +  + L +AG+V+  R
Sbjct: 14 AAVLLSLASRGPASRTELAASLGLSAATLTRATRALAEAGLVDESR 59


>gi|261380384|ref|ZP_05984957.1| transcriptional regulator, ArsR family [Neisseria subflava
          NJ9703]
 gi|284796909|gb|EFC52256.1| transcriptional regulator, ArsR family [Neisseria subflava
          NJ9703]
          Length = 100

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          L      ++ P+ ++++AE+  + +  +   L  L +AG+V
Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66


>gi|297200627|ref|ZP_06918024.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197709758|gb|EDY53792.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 289

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++A    +S   + ++L  L   G +E+ +GR 
Sbjct: 40 RELAAKYQVSRDTVQRVLGVLADEGWIESRQGRG 73


>gi|170089355|ref|XP_001875900.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649160|gb|EDR13402.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 763

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
           +    + +    +S+++ A  I + +L ++L  LVKA I+
Sbjct: 601 VLLQYNKNDTLSLSELSAATSIPKDYLGQVLAILVKAKIL 640


>gi|161617806|ref|YP_001591771.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161367170|gb|ABX70938.1| hypothetical protein SPAB_05670 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|321222522|gb|EFX47594.1| Uxu operon transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
          Length = 241

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      +IAE   ++   + + L  L   G+VE  RG  
Sbjct: 12 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG 54


>gi|148984939|ref|ZP_01818192.1| transcriptional repressor CodY [Streptococcus pneumoniae SP3-BS71]
 gi|148988637|ref|ZP_01820070.1| transcriptional repressor CodY [Streptococcus pneumoniae SP6-BS73]
 gi|148993391|ref|ZP_01822908.1| transcriptional repressor CodY [Streptococcus pneumoniae SP9-BS68]
 gi|148997349|ref|ZP_01824954.1| transcriptional repressor CodY [Streptococcus pneumoniae SP11-BS70]
 gi|149003179|ref|ZP_01828075.1| transcriptional repressor CodY [Streptococcus pneumoniae SP14-BS69]
 gi|149007500|ref|ZP_01831135.1| transcriptional repressor CodY [Streptococcus pneumoniae SP18-BS74]
 gi|149012682|ref|ZP_01833658.1| transcriptional repressor CodY [Streptococcus pneumoniae SP19-BS75]
 gi|149022053|ref|ZP_01836015.1| transcriptional repressor CodY [Streptococcus pneumoniae SP23-BS72]
 gi|168483539|ref|ZP_02708491.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC1873-00]
 gi|168486851|ref|ZP_02711359.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488694|ref|ZP_02712893.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae SP195]
 gi|168491524|ref|ZP_02715667.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493487|ref|ZP_02717630.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575218|ref|ZP_02721181.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae MLV-016]
 gi|169832460|ref|YP_001694987.1| transcriptional repressor CodY [Streptococcus pneumoniae
           Hungary19A-6]
 gi|182684537|ref|YP_001836284.1| transcriptional repressor CodY [Streptococcus pneumoniae CGSP14]
 gi|221232343|ref|YP_002511496.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           pneumoniae ATCC 700669]
 gi|225855025|ref|YP_002736537.1| transcriptional repressor CodY [Streptococcus pneumoniae JJA]
 gi|225857208|ref|YP_002738719.1| transcriptional repressor CodY [Streptococcus pneumoniae P1031]
 gi|225859339|ref|YP_002740849.1| transcriptional repressor CodY [Streptococcus pneumoniae 70585]
 gi|225861415|ref|YP_002742924.1| transcriptional repressor CodY [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650265|ref|ZP_04524517.1| transcriptional repressor CodY [Streptococcus pneumoniae CCRI 1974]
 gi|237820851|ref|ZP_04596696.1| transcriptional repressor CodY [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298230289|ref|ZP_06963970.1| transcriptional repressor CodY [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255230|ref|ZP_06978816.1| transcriptional repressor CodY [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503321|ref|YP_003725261.1| CodY family transcriptional regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307068225|ref|YP_003877191.1| pleiotropic transcriptional repressor [Streptococcus pneumoniae
           AP200]
 gi|307127793|ref|YP_003879824.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae 670-6B]
 gi|226709189|sp|B1ID02|CODY_STRPI RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|226709190|sp|B2IRA0|CODY_STRPS RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|254765872|sp|C1C8H3|CODY_STRP7 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|254765873|sp|B8ZLU4|CODY_STRPJ RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|254765875|sp|C1CFG6|CODY_STRZJ RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|254765876|sp|C1CLT1|CODY_STRZP RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|254765877|sp|C1CSK2|CODY_STRZT RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|147756404|gb|EDK63445.1| transcriptional repressor CodY [Streptococcus pneumoniae SP11-BS70]
 gi|147758639|gb|EDK65636.1| transcriptional repressor CodY [Streptococcus pneumoniae SP14-BS69]
 gi|147760859|gb|EDK67829.1| transcriptional repressor CodY [Streptococcus pneumoniae SP18-BS74]
 gi|147763282|gb|EDK70220.1| transcriptional repressor CodY [Streptococcus pneumoniae SP19-BS75]
 gi|147922961|gb|EDK74077.1| transcriptional repressor CodY [Streptococcus pneumoniae SP3-BS71]
 gi|147925838|gb|EDK76913.1| transcriptional repressor CodY [Streptococcus pneumoniae SP6-BS73]
 gi|147927946|gb|EDK78966.1| transcriptional repressor CodY [Streptococcus pneumoniae SP9-BS68]
 gi|147929897|gb|EDK80886.1| transcriptional repressor CodY [Streptococcus pneumoniae SP23-BS72]
 gi|168994962|gb|ACA35574.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172043154|gb|EDT51200.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629871|gb|ACB90819.1| transcriptional repressor CodY [Streptococcus pneumoniae CGSP14]
 gi|183570227|gb|EDT90755.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572688|gb|EDT93216.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae SP195]
 gi|183574186|gb|EDT94714.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576471|gb|EDT96999.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578882|gb|EDT99410.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae MLV-016]
 gi|220674804|emb|CAR69377.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           pneumoniae ATCC 700669]
 gi|225722103|gb|ACO17957.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae 70585]
 gi|225722189|gb|ACO18042.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae JJA]
 gi|225725624|gb|ACO21476.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae P1031]
 gi|225727784|gb|ACO23635.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238916|gb|ADI70047.1| CodY family transcriptional regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794591|emb|CBW37035.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           pneumoniae INV104]
 gi|301800412|emb|CBW33044.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           pneumoniae OXC141]
 gi|306409762|gb|ADM85189.1| Pleiotropic transcriptional repressor [Streptococcus pneumoniae
           AP200]
 gi|306484855|gb|ADM91724.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae 670-6B]
 gi|327389769|gb|EGE88114.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA04375]
 gi|332072429|gb|EGI82912.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA17570]
 gi|332072753|gb|EGI83234.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA17545]
 gi|332073918|gb|EGI84396.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA41301]
 gi|332199625|gb|EGJ13700.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA41317]
 gi|332200145|gb|EGJ14218.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA47368]
 gi|332201023|gb|EGJ15094.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae GA47901]
          Length = 262

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|116669401|ref|YP_830334.1| GntR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609510|gb|ABK02234.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24]
          Length = 246

 Score = 33.8 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +A    +S   + K +  LV++G++   RG  
Sbjct: 45 DLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77


>gi|332670723|ref|YP_004453731.1| MarR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339761|gb|AEE46344.1| transcriptional regulator, MarR family [Cellulomonas fimi ATCC 484]
          Length = 176

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           VL++ A     P    ++A AC ++E  + ++L  + + G VE
Sbjct: 63  VLVHLARA---PYSQRELAGACGVTEQTMSRVLARMERTGYVE 102


>gi|300787709|ref|YP_003768000.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299797223|gb|ADJ47598.1| GntR family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 131

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M L  +    +RV       +D   ++  +AEA  I+   + K  + LV  G+ E   G 
Sbjct: 16 MQLVVQVKQALRV--GLLRPDDQLPKVRDVAEALAINPNTVLKAYRELVLEGLAEGRPGV 73

Query: 61 R 61
           
Sbjct: 74 G 74


>gi|296269057|ref|YP_003651689.1| GntR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296091844|gb|ADG87796.1| transcriptional regulator, GntR family with aminotransferase
          domain [Thermobispora bispora DSM 43833]
          Length = 479

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +   D      +I     +S + + + +  L   G+V +  G  
Sbjct: 21 SRPGDRLPSSREIMRRHGVSPITVSRAIARLAAEGLVISKPGSG 64


>gi|257462643|ref|ZP_05627053.1| aminotransferase class-I [Fusobacterium sp. D12]
 gi|317060290|ref|ZP_07924775.1| transcriptional regulator [Fusobacterium sp. D12]
 gi|313685966|gb|EFS22801.1| transcriptional regulator [Fusobacterium sp. D12]
          Length = 478

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR----GGVRL 66
           I Q++    ++   + K+ Q L + G + +++G+      G  L
Sbjct: 38 SIRQVSIKFEVNLNTVLKVFQTLEEEGYLYSIKGKGCFIKKGYHL 82


>gi|241760154|ref|ZP_04758252.1| regulatory protein ArsR [Neisseria flavescens SK114]
 gi|241319608|gb|EER56038.1| regulatory protein ArsR [Neisseria flavescens SK114]
          Length = 100

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          L      ++ P+ ++++AE+  + +  +   L  L +AG+V
Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66


>gi|255942771|ref|XP_002562154.1| Pc18g03140 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586887|emb|CAP94538.1| Pc18g03140 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 388

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 11  IRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +R+     +      +D    +++IAE    S  FL +IL+ L    I++
Sbjct: 54  LRISADLGLFRSLAESDASLTVTKIAELTRASPQFLERILRYLAATHIIK 103


>gi|254440608|ref|ZP_05054102.1| putative transcriptional regulator family [Octadecabacter
          antarcticus 307]
 gi|198256054|gb|EDY80368.1| putative transcriptional regulator family [Octadecabacter
          antarcticus 307]
          Length = 217

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 37 SELFLFKILQPLVKAGIVETVRGRRGG--VRLCRPADQIT 74
          S   L K L  L  AG++ +++G  G    RL +  +++ 
Sbjct: 36 SPTLLSKRLSELEAAGVIVSIKGTSGSKEYRLTKAGEELR 75


>gi|197363683|ref|YP_002143320.1| transcriptional regulator [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|197095160|emb|CAR60709.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|301159361|emb|CBW18879.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
          Length = 79

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ C +         ++A    +S     + L  + + G++++ R
Sbjct: 6  RLLILCMLCGSPKTSAGELARITGLSPSATSQHLARMREEGLIDSQR 52


>gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 14  LMYCAIHNDYPNRISQIAEAC-----CISELFLFKILQPLVK---AGIVETVRGRRGGVR 65
           L+             Q+A+        +    L   +  L +   +GIVETVRG  GG R
Sbjct: 158 LLALLQSRGRLLTPDQLADRVYGWVDGVESNALAVHIHNLRRKLGSGIVETVRG--GGYR 215

Query: 66  LCRP 69
           L  P
Sbjct: 216 LGAP 219


>gi|188535517|ref|YP_001909314.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188030559|emb|CAO98454.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 306

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQP 47
            A H + P  + +IA    +S   L ++ + 
Sbjct: 224 MAQHPEQPWSLEEIASCAHVSARHLTRLFRQ 254


>gi|184199676|ref|YP_001853883.1| MarR family transcriptional regulator [Kocuria rhizophila DC2201]
 gi|183579906|dbj|BAG28377.1| putative MarR family transcriptional regulator [Kocuria
          rhizophila DC2201]
          Length = 161

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          VL   +   ++ +++S +A A   S+  L +I+  + + G+V T  GR+
Sbjct: 46 VLAMLSEAPNHRHKMSALATATNTSQSRLSRIVARMERDGLV-TREGRQ 93


>gi|170694906|ref|ZP_02886056.1| transcriptional regulator, GntR family [Burkholderia graminis
           C4D1M]
 gi|170140266|gb|EDT08444.1| transcriptional regulator, GntR family [Burkholderia graminis
           C4D1M]
          Length = 228

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 6   RTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + DY  R L       A+         Q+A    +    + + L  L + G VET   RR
Sbjct: 19  KVDYAYRRLEEMIVTRALPPGALVSEVQLANEINVGRTPVREALARLKQFGFVETHP-RR 77

Query: 62  GGVRLCRPAD-QITILDVVKATEESFFVAEC 91
           G          Q+ +L+V +A E     A C
Sbjct: 78  GTFVSTVDVRKQLELLEVRRALEPLVVAAAC 108


>gi|126740162|ref|ZP_01755851.1| transcriptional regulator, GntR family protein [Roseobacter sp.
           SK209-2-6]
 gi|126718617|gb|EBA15330.1| transcriptional regulator, GntR family protein [Roseobacter sp.
           SK209-2-6]
          Length = 477

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR------P 69
             A  +  P      A    +S   +    + LV  G +++  G   G RLC       P
Sbjct: 35  DLAAGSLLP-PTRVFATELGVSRSTVVTAYEQLVAEGYLQSQPGS--GYRLCPVGEVELP 91

Query: 70  ADQITILDVVKATEESFFVAECFASHKID 98
           ++ +T+  V  A EE      CF + + D
Sbjct: 92  SEAMTLQSV--APEEKSRQVACFEAGQPD 118


>gi|27468803|ref|NP_765440.1| hypothetical protein SE1885 [Staphylococcus epidermidis ATCC
          12228]
 gi|57867764|ref|YP_189456.1| DeoR family transcriptional regulator [Staphylococcus epidermidis
          RP62A]
 gi|251811986|ref|ZP_04826459.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282875279|ref|ZP_06284152.1| transcriptional regulator, DeoR family [Staphylococcus
          epidermidis SK135]
 gi|293368370|ref|ZP_06614996.1| DeoR family transcriptional regulator [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|27316351|gb|AAO05526.1|AE016750_131 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57638422|gb|AAW55210.1| transcriptional regulator, DeoR family [Staphylococcus
          epidermidis RP62A]
 gi|251804495|gb|EES57152.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281296044|gb|EFA88565.1| transcriptional regulator, DeoR family [Staphylococcus
          epidermidis SK135]
 gi|291317502|gb|EFE57922.1| DeoR family transcriptional regulator [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329726530|gb|EGG62993.1| HTH domain protein [Staphylococcus epidermidis VCU144]
 gi|329733896|gb|EGG70220.1| HTH domain protein [Staphylococcus epidermidis VCU028]
 gi|329738023|gb|EGG74245.1| HTH domain protein [Staphylococcus epidermidis VCU045]
          Length = 229

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITI 75
          I +      SQ+A+   +S+  + + +  L   G+ V    G+ GG ++     +IT+
Sbjct: 14 IQSSDKITASQLAKQFNVSKRTILRDIDELEDQGVKVYARHGKLGGYQIKDAHAKITL 71


>gi|33603090|ref|NP_890650.1| transcriptional regulator [Bordetella bronchiseptica RB50]
 gi|33568721|emb|CAE34479.1| probable transcriptional regulator [Bordetella bronchiseptica
          RB50]
          Length = 271

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            R L    A H    P  + +IAEA  +      +IL  L   G VE   G RG
Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83


>gi|14590621|ref|NP_142689.1| hypothetical protein PH0751 [Pyrococcus horikoshii OT3]
 gi|3257159|dbj|BAA29842.1| 357aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 357

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          +Y AI       +  + E   + +  L+ I+Q L++ G +    GR
Sbjct: 23 VYLAILMKNGATVKDLLETLDVHQPQLYNIIQSLIRKGFIRASAGR 68


>gi|116668599|ref|YP_829532.1| GntR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116608708|gb|ABK01432.1| transcriptional regulator, GntR family [Arthrobacter sp. FB24]
          Length = 230

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
             D     + +     +S   +   L  L   G+VET RGR G   L  P 
Sbjct: 23 QPGDKLPSENTLIGEFGVSRTVVRAALTRLQAEGLVETERGR-GSFALTPPP 73


>gi|319794247|ref|YP_004155887.1| IclR family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596710|gb|ADU37776.1| transcriptional regulator, IclR family [Variovorax paradoxus EPS]
          Length = 279

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          G+RVL   +  N       ++A    +    +F++L  L   G +E   G R   RL 
Sbjct: 25 GLRVLCEFSREN-RTLSAPELARRFDLPRSTVFRLLTTLENMGFLERAEGGR-DYRLG 80


>gi|315441504|ref|YP_004074381.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
 gi|315265159|gb|ADU01900.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
          Length = 124

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           A H      +  I+    +S+  +   L+ L  AG++ + R   
Sbjct: 52 IASHAGGEACVCDISADIEVSQPTISHHLKVLRDAGLLTSQRRAS 96


>gi|307946386|ref|ZP_07661721.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Roseibium sp. TrichSKD4]
 gi|307770050|gb|EFO29276.1| toxin-antitoxin system, antitoxin component, ArsR family
          [Roseibium sp. TrichSKD4]
          Length = 126

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          +L   A        ++++AE   IS+  + K L+ L K+G++E  RG     R  RPA 
Sbjct: 28 ILTRLAQ---GEATVNELAEPFQISQPAISKHLKVLEKSGLIE--RGIN---RTKRPAR 78


>gi|300818223|ref|ZP_07098434.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 107-1]
 gi|300529114|gb|EFK50176.1| bacterial extracellular solute-binding protein, family 5
          [Escherichia coli MS 107-1]
          Length = 566

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRLCRPADQITILDVVK 80
            ++++AE C  SE  +  +L+   +AG +E    + RG+RG +R     + +    + +
Sbjct: 24 VTVNELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQ 83

Query: 81 ATE 83
          A E
Sbjct: 84 ALE 86


>gi|284045861|ref|YP_003396201.1| GntR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283950082|gb|ADB52826.1| GntR domain protein [Conexibacter woesei DSM 14684]
          Length = 243

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
          + +D      + A    +S + L   L+ L  AG+++ VR   GG  L   A  + + DV
Sbjct: 37 LPDDQLPPEREFAVQLGVSRMTLRTALRDLEAAGLLKRVRRGSGGGALVINAGTLGVTDV 96


>gi|256783282|ref|ZP_05521713.1| MarR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 150

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 22/35 (62%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          +  + P R++++A A  +S+  + +++  L +AG+
Sbjct: 42 LSREGPQRLTELARAEGVSQPNMTQLVTRLERAGL 76


>gi|225869157|ref|YP_002745105.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           equi subsp. zooepidemicus]
 gi|259586008|sp|C0MEA0|CODY_STRS7 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|225702433|emb|CAX00314.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           equi subsp. zooepidemicus]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|195977530|ref|YP_002122774.1| transcriptional repressor CodY [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|226709188|sp|B4U194|CODY_STREM RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|195974235|gb|ACG61761.1| GTP-sensing transcriptional pleiotropic repressor codY
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|194397588|ref|YP_002038214.1| transcriptional repressor CodY [Streptococcus pneumoniae G54]
 gi|194357255|gb|ACF55703.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae G54]
          Length = 262

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|161520632|ref|YP_001584059.1| GntR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189353182|ref|YP_001948809.1| GntR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160344682|gb|ABX17767.1| transcriptional regulator, GntR family [Burkholderia multivorans
          ATCC 17616]
 gi|189337204|dbj|BAG46273.1| GntR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 224

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58
           +A     S   L ++L  L + G+V  VR
Sbjct: 38 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 67


>gi|114761512|ref|ZP_01441427.1| transcriptional regulator, GntR family protein [Pelagibaca
          bermudensis HTCC2601]
 gi|114545760|gb|EAU48762.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          HTCC2601]
          Length = 247

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 24/43 (55%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +D    + ++ E   ++ + + + +Q LV+ G++ + RG+R
Sbjct: 31 RQDDPVPTLDELTEEFSLARVTVRQAIQLLVQEGLLSSHRGKR 73


>gi|94992548|ref|YP_600647.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS2096]
 gi|94546056|gb|ABF36103.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS2096]
          Length = 153

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98


>gi|2398776|emb|CAA67940.1| putative regulator of catechol degradative operon [Rhodococcus
          opacus]
          Length = 256

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +  A     PN  ++++A    +S   + +IL  L K G V    G  G   L      +
Sbjct: 18 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 72

Query: 74 TILD 77
          +I  
Sbjct: 73 SIGQ 76


>gi|92117769|ref|YP_577498.1| ArsR family transcriptional regulator [Nitrobacter hamburgensis
          X14]
 gi|91800663|gb|ABE63038.1| transcriptional regulator, ArsR family [Nitrobacter hamburgensis
          X14]
          Length = 115

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             H         IA+A  + +  +   L  L +AG+V   R
Sbjct: 25 LVKHEPKGLAAGDIAKAVAVPQNTMSSHLAVLSRAGLVSAQR 66


>gi|75677301|ref|YP_319722.1| ArsR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74422171|gb|ABA06370.1| transcriptional regulator, ArsR family [Nitrobacter winogradskyi
           Nb-255]
          Length = 120

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 3   LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRR 61
           L++ T   +R++               I EA    S   +   L  L  AG+VE+ R   
Sbjct: 13  LSQETR--LRIVRLLVKAGPEGMSAGAIGEAMDSASSSRMSFHLSHLEHAGLVESRRE-- 68

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
            G  +   A  +T+  +V+     F + +C   H   C
Sbjct: 69  -GRSIIYSAALVTLSSLVE-----FLMRDCCQGHPEVC 100


>gi|52784454|ref|YP_090283.1| hypothetical protein BLi00652 [Bacillus licheniformis ATCC 14580]
 gi|163119267|ref|YP_077880.2| hypothetical protein BL05058 [Bacillus licheniformis ATCC 14580]
 gi|52346956|gb|AAU39590.1| conserved hypothetical protein [Bacillus licheniformis ATCC
          14580]
 gi|145902773|gb|AAU22242.2| hypothetical protein BL05058 [Bacillus licheniformis ATCC 14580]
          Length = 315

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
          ++   ++      + ++A    +S+  + + LQ L + G+ + +  G  GG +
Sbjct: 10 MIMM-VNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQ 61


>gi|33598194|ref|NP_885837.1| transcriptional regulator [Bordetella parapertussis 12822]
 gi|33566752|emb|CAE38965.1| probable transcriptional regulator [Bordetella parapertussis]
          Length = 271

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            R L    A H    P  + +IAEA  +      +IL  L   G VE   G RG
Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83


>gi|27382195|ref|NP_773724.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|14041196|emb|CAC38738.1| hypothetical protein [Bradyrhizobium japonicum]
 gi|27355366|dbj|BAC52349.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 236

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 12  RVLMYCAIHNDY----------PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             L+  A  +            P     IA+    +   + +IL    + G+VE+ R R 
Sbjct: 156 HALLRLAKQSGKKLDHGIEIDFPISRQDIAQMTGTTLHTVSRILSGWEQQGLVESGRQR- 214

Query: 62  GGVRLCRPADQITIL 76
               + R   +I +L
Sbjct: 215 ---IILREPHRIVVL 226


>gi|21225694|ref|NP_631473.1| MarR family transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289767155|ref|ZP_06526533.1| MarR family transcriptional regulator [Streptomyces lividans
          TK24]
 gi|7160158|emb|CAB76343.1| putative MarR-family transcriptional regulator [Streptomyces
          coelicolor A3(2)]
 gi|289697354|gb|EFD64783.1| MarR family transcriptional regulator [Streptomyces lividans
          TK24]
          Length = 155

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 22/35 (62%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          +  + P R++++A A  +S+  + +++  L +AG+
Sbjct: 47 LSREGPQRLTELARAEGVSQPNMTQLVTRLERAGL 81


>gi|15675618|ref|NP_269792.1| transcriptional repressor CodY [Streptococcus pyogenes M1 GAS]
 gi|19746726|ref|NP_607862.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS8232]
 gi|21911080|ref|NP_665348.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS315]
 gi|71911325|ref|YP_282875.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS5005]
 gi|139473210|ref|YP_001127925.1| transcriptional repressor CodY [Streptococcus pyogenes str.
           Manfredo]
 gi|209559888|ref|YP_002286360.1| transcriptional repressor CodY [Streptococcus pyogenes NZ131]
 gi|306826767|ref|ZP_07460069.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pyogenes ATCC 10782]
 gi|61212506|sp|Q5XAC3|CODY_STRP6 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|61221145|sp|P0A349|CODY_STRP1 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|61221146|sp|P0A350|CODY_STRP3 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|61221147|sp|P0A351|CODY_STRP8 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|166218409|sp|A2RCV3|CODY_STRPG RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|226709191|sp|B5XI03|CODY_STRPZ RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|13622826|gb|AAK34513.1| putative transcriptional pleiotropic repressor [Streptococcus
           pyogenes M1 GAS]
 gi|19748952|gb|AAL98361.1| putative transcriptional pleiotropic repressor [Streptococcus
           pyogenes MGAS8232]
 gi|21905289|gb|AAM80151.1| putative transcriptional pleiotropic repressor [Streptococcus
           pyogenes MGAS315]
 gi|71854107|gb|AAZ52130.1| transcription pleiotropic repressor [Streptococcus pyogenes
           MGAS5005]
 gi|134271456|emb|CAM29676.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           pyogenes str. Manfredo]
 gi|209541089|gb|ACI61665.1| GTP-sensing transcriptional pleiotropic repressor codY
           [Streptococcus pyogenes NZ131]
 gi|304431056|gb|EFM34063.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pyogenes ATCC 10782]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|328956601|ref|YP_004373987.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Carnobacterium sp. 17-4]
 gi|328672925|gb|AEB28971.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor
          [Carnobacterium sp. 17-4]
          Length = 328

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRR 61
          ++ +    +R+L               +A++  +S   ++K ++ L + G  +E V    
Sbjct: 1  MSTK----LRILSLLEQQKGNSISGQSLADSLGLSRTSIWKGIKSLQEEGYIIEAV--TN 54

Query: 62 GGVRLCRPADQIT 74
           G RL   +D I+
Sbjct: 55 KGYRLSLSSDIIS 67


>gi|329944606|ref|ZP_08292746.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 170 str. F0386]
 gi|328530159|gb|EGF57042.1| transcriptional regulator, MarR family [Actinomyces sp. oral
          taxon 170 str. F0386]
          Length = 142

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           L+     ++     SQ+A  C IS+  + + ++ L +A  +       GG  L
Sbjct: 38 ALIMLQRRDEA--TASQLARDCNISQQAMSQTVKRLREAEFITLQPSPHGGRAL 89


>gi|313897820|ref|ZP_07831361.1| transcriptional regulator, LysR family [Clostridium sp. HGF2]
 gi|312957355|gb|EFR38982.1| transcriptional regulator, LysR family [Clostridium sp. HGF2]
          Length = 299

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 11 IRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQ----PLVKAGIVETVRG---RRG 62
          +RVL Y   I  +    IS  AE   IS+  L + ++     L K   V + R     + 
Sbjct: 3  LRVLHYFLTIAREQ--SISGAAEFLHISQPTLSRQMKDMEDELGKQLFVRSNRKITLTQE 60

Query: 63 GVRLCRPADQITILDVVKATEESFFVAE 90
          G  L + A++I  LD+VK TE+   + +
Sbjct: 61 GRILRKRAEEI--LDLVKKTEDEITLQD 86


>gi|255263369|ref|ZP_05342711.1| GntR domain protein [Thalassiobium sp. R2A62]
 gi|255105704|gb|EET48378.1| GntR domain protein [Thalassiobium sp. R2A62]
          Length = 256

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + +L       +      +++E   +S   L   L  L   G++++  G  
Sbjct: 21 LLILRGILRPGERLPSERELSERLGVSRPSLRDALADLSDRGLLDSRAGAG 71


>gi|261822938|ref|YP_003261044.1| transcriptional regulator, IclR family [Pectobacterium wasabiae
          WPP163]
 gi|261606951|gb|ACX89437.1| transcriptional regulator, IclR family [Pectobacterium wasabiae
          WPP163]
          Length = 252

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M + +  +  +R+L       +   +I+ I+    + +  L  +L+ L  AG ++  +  
Sbjct: 1  MPIIQSVERALRIL-DLFDEYNVEIKITDISTQIGLHKSTLHSLLKTLQVAGYIDQNK-E 58

Query: 61 RGGVRLCRP 69
           G  RL   
Sbjct: 59 NGKYRLGMK 67


>gi|239627197|ref|ZP_04670228.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239517343|gb|EEQ57209.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D     +++AE   IS   L + ++ L+  GI+E  RGR 
Sbjct: 28 GDRLPNETELAEELNISRTTLREAIKILIAYGILEIQRGRG 68


>gi|269128350|ref|YP_003301720.1| ArsR family transcriptional regulator [Thermomonospora curvata
          DSM 43183]
 gi|268313308|gb|ACY99682.1| transcriptional regulator, ArsR family [Thermomonospora curvata
          DSM 43183]
          Length = 104

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+L   A        + ++  A  ++   +   L+ L +AG+V + R
Sbjct: 26 LRLLSLIACRKGGEVCVCELTGAFDVTAPTISHHLKVLKQAGLVVSER 73


>gi|225869891|ref|YP_002745838.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           equi subsp. equi 4047]
 gi|254765871|sp|C0M7E5|CODY_STRE4 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|225699295|emb|CAW92648.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           equi subsp. equi 4047]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|221209886|ref|ZP_03582867.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD1]
 gi|221170574|gb|EEE03040.1| transcriptional regulator, GntR family [Burkholderia multivorans
          CGD1]
          Length = 244

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR 58
           +A     S   L ++L  L + G+V  VR
Sbjct: 58 DLAAEYGTSRNSLREVLHQLGREGLVTFVR 87


>gi|188025596|ref|ZP_02997578.1| hypothetical protein PROSTU_00975 [Providencia stuartii ATCC 25827]
 gi|188022954|gb|EDU60994.1| hypothetical protein PROSTU_00975 [Providencia stuartii ATCC 25827]
          Length = 269

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----C 67
           ++    +  D   +   + E    S+  + + L+ L   G+++T  G  GG  +      
Sbjct: 41  IMADNLMPGDRLPQEKDLIERYSASKSTVREALKSLEVQGLIKTKTGPGGGAFIDSMTEA 100

Query: 68  RPA---------DQITILDVV 79
           R             I+I D+ 
Sbjct: 101 RAMSLLSNYLFTRDISIKDIY 121


>gi|149180552|ref|ZP_01859056.1| transcriptional regulator (GntR family) protein [Bacillus sp.
          SG-1]
 gi|148851705|gb|EDL65851.1| transcriptional regulator (GntR family) protein [Bacillus sp.
          SG-1]
          Length = 132

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++    +  +A    I+   + K  + L   G + +V+GR 
Sbjct: 32 DEQLPSVRTLAGELTINPNTIQKAYRELENQGYIYSVKGRG 72


>gi|118590840|ref|ZP_01548240.1| putative transcriptional regulator, ArsR family protein [Stappia
          aggregata IAM 12614]
 gi|118436362|gb|EAV43003.1| putative transcriptional regulator, ArsR family protein [Stappia
          aggregata IAM 12614]
          Length = 111

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
          L+  T    R ++  A   D    +S++AE   +S   + K L+ L  AG+V+   RGR
Sbjct: 16 LSDGTR---RAIV--ARLADGETSLSELAEPFDMSLTAVSKHLRVLSNAGLVDIEKRGR 69


>gi|116695409|ref|YP_840985.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529908|emb|CAJ96255.1| predicted transcriptional regulator [Ralstonia eutropha H16]
          Length = 88

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
             P  +++IA+   +    L ++L  L  AG+
Sbjct: 25 GGSPWSLAKIAKRAQLPMSVLRRVLTQLQAAGL 57


>gi|110635178|ref|YP_675386.1| MarR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286162|gb|ABG64221.1| transcriptional regulator, MarR family [Chelativorans sp. BNC1]
          Length = 166

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +  A+H +     SQ+AE   +    + K +  L   G VE
Sbjct: 48 IMLALHLENGLTPSQLAERLGVRPPTITKTINRLAAQGFVE 88


>gi|50914324|ref|YP_060296.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS10394]
 gi|50903398|gb|AAT87113.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS10394]
          Length = 153

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 48 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 98


>gi|37679692|ref|NP_934301.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
          YJ016]
 gi|37198437|dbj|BAC94272.1| transcriptional regulator of sugar metabolism [Vibrio vulnificus
          YJ016]
          Length = 257

 Score = 33.8 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L
Sbjct: 14 ILAYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISL 63


>gi|333025293|ref|ZP_08453357.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332745145|gb|EGJ75586.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 372

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +AEA  +S   + + L  L +AG+V + R  RG   L
Sbjct: 317 LAEAHGLSAPEISRHLAVLKRAGLVTSSR--RGRYVL 351


>gi|311105804|ref|YP_003978657.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
          A8]
 gi|310760493|gb|ADP15942.1| bacterial regulatory protein, GntR family protein 28
          [Achromobacter xylosoxidans A8]
          Length = 247

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   + + +  L  +G V+T RG  
Sbjct: 49 ELAQMFAVSRNVVREAIARLKLSGYVDTRRGVG 81


>gi|297157248|gb|ADI06960.1| putative HTH-type transcriptional regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 189

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
           +    I Q+A+A  +    + +    L++AG++E +   +GG  L R     T+ 
Sbjct: 79  EGALSIGQLADALGLDVSTVNRQTGALLRAGLLERIPDPKGG--LARKLRATTLG 131


>gi|297517202|ref|ZP_06935588.1| transcriptional regulator, GntR family protein [Escherichia coli
          OP50]
          Length = 97

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|271969820|ref|YP_003344016.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270512995|gb|ACZ91273.1| Transcriptional regulators-like protein [Streptosporangium roseum
          DSM 43021]
          Length = 287

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          V++      D P++   +A    I+   + K+L  L +AG V   R
Sbjct: 49 VVLDMLADEDAPSQ-QDLAHRLGINRTIMVKLLDRLQQAGYVTRTR 93


>gi|256380772|ref|YP_003104432.1| GntR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255925075|gb|ACU40586.1| transcriptional regulator, GntR family with aminotransferase
          domain [Actinosynnema mirum DSM 43827]
          Length = 487

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +R+L+               ++AEA  +S   +   L  L   G+V + RG  
Sbjct: 38 AVRMLVLDGRLPAGTRLPAEREMAEALPVSRTMVSAALDQLRAEGLVASRRGAG 91


>gi|297567593|ref|YP_003686564.1| hypothetical protein Mesil_3239 [Meiothermus silvanus DSM 9946]
 gi|296852042|gb|ADH65056.1| hypothetical protein Mesil_3239 [Meiothermus silvanus DSM 9946]
          Length = 263

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 1   MHLT----KRTDYGIRVLMYCAIHNDYPNRISQIAEACCIS--ELFLFKILQPLVKAGIV 54
           M LT          + +LM   +    P     I            L  ++  L +AG V
Sbjct: 94  MRLTDLFFAFPRLPLLILMSLYLRP-SPLNAVLILALFGWPDTARTLRPLVAALREAGYV 152

Query: 55  ETVR--GRRGGVRLCR 68
              R  G  G   L R
Sbjct: 153 RVARSLGAGGAYLLAR 168


>gi|328472133|gb|EGF43008.1| GntR family transcriptional regulator [Listeria monocytogenes
          220]
          Length = 87

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|255655638|ref|ZP_05401047.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451641|ref|ZP_06893375.1| GntR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878886|ref|ZP_06902886.1| GntR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259559|gb|EFH06420.1| GntR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430158|gb|EFH16005.1| GntR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 122

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                +  +AE   ++   + K L  L + G+V + R
Sbjct: 31 GSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQR 68


>gi|222475764|ref|YP_002564285.1| hypothetical protein Hlac_2835 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454135|gb|ACM58399.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 306

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
            + VL Y     D P  +++IA+        + ++L+     G+V T  GR
Sbjct: 88  ALEVLYYL----DQPRTVAEIADRSDNYRNTVNRVLKRFRNCGLVGTDDGR 134


>gi|126738098|ref|ZP_01753819.1| transcriptional regulator, DeoR family protein [Roseobacter sp.
          SK209-2-6]
 gi|126720595|gb|EBA17300.1| transcriptional regulator, DeoR family protein [Roseobacter sp.
          SK209-2-6]
          Length = 258

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
          L+          R +++A+   +SE  + + ++ L KAG+VE V    GG  L
Sbjct: 8  LLEALRRLGGSGRSAELAKVLDVSEETVRRTIKALAKAGVVERV---HGGAYL 57


>gi|121594776|ref|YP_986672.1| ArsR family transcriptional regulator [Acidovorax sp. JS42]
 gi|222110609|ref|YP_002552873.1| ArsR family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|120606856|gb|ABM42596.1| transcriptional regulator, ArsR family [Acidovorax sp. JS42]
 gi|221730053|gb|ACM32873.1| transcriptional regulator, ArsR family [Acidovorax ebreus TPSY]
          Length = 107

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM      +    + ++ +   I +  L + L  L + G+V+T R
Sbjct: 33 LMLLCQLTEGERTVGELEQLTGIGQPTLSQQLGVLRRDGLVQTRR 77


>gi|94994968|ref|YP_603066.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10750]
 gi|123382151|sp|Q1J564|CODY_STRPF RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|94548476|gb|ABF38522.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes
           MGAS10750]
          Length = 260

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|311280533|ref|YP_003942764.1| transcriptional regulator, ArsR family [Enterobacter cloacae
          SCF1]
 gi|308749728|gb|ADO49480.1| transcriptional regulator, ArsR family [Enterobacter cloacae
          SCF1]
          Length = 112

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ C +       +S+I  A  I +  L + L  L +  +V T R
Sbjct: 29 RLLLLCHLSQGE-ASVSEIEAALGIGQPTLSQQLGVLRRENLVSTRR 74


>gi|298251436|ref|ZP_06975239.1| transcriptional regulator, MarR family [Ktedonobacter racemifer
          DSM 44963]
 gi|297546028|gb|EFH79896.1| transcriptional regulator, MarR family [Ktedonobacter racemifer
          DSM 44963]
          Length = 143

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++  ++  +     S++A    +    + K++Q + +AG+VE
Sbjct: 40 MLLLSLQREDGLTQSELATIHNVDLSTITKVVQRIERAGLVE 81


>gi|258651196|ref|YP_003200352.1| GntR family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554421|gb|ACV77363.1| transcriptional regulator, GntR family [Nakamurella multipartita
          DSM 44233]
          Length = 244

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +    P     ++AE    S   + + +  LV  G +E  +GR 
Sbjct: 21 LAPGSPVPTERELAERFGTSRTTVRQAIAELVVDGRLERTQGRG 64


>gi|300024504|ref|YP_003757115.1| transcriptional regulator [Hyphomicrobium denitrificans ATCC
          51888]
 gi|299526325|gb|ADJ24794.1| putative transcriptional regulator [Hyphomicrobium denitrificans
          ATCC 51888]
          Length = 89

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVR------GRRGGVRL 66
           IA    +S     K ++ L + G+V +        GR+GG  L
Sbjct: 30 DIAARFAMSTDAARKHMKQLQRDGLVRSRPDTYSFSGRQGGPVL 73


>gi|255606793|ref|XP_002538636.1| conserved hypothetical protein [Ricinus communis]
 gi|223511267|gb|EEF23748.1| conserved hypothetical protein [Ricinus communis]
          Length = 241

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 12 RVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          RVL       ++         +IAE   +S   + + L+ L K G+V+   GR 
Sbjct: 20 RVLADAISDGSLAPGTRLTQEEIAEQFAVSRSPVLQALRLLKKDGLVQDAPGRG 73


>gi|189460016|ref|ZP_03008801.1| hypothetical protein BACCOP_00651 [Bacteroides coprocola DSM
          17136]
 gi|189433266|gb|EDV02251.1| hypothetical protein BACCOP_00651 [Bacteroides coprocola DSM
          17136]
          Length = 242

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++E   IS   L + +  LV  G++   +G  
Sbjct: 39 DLSERLNISRNTLRQAINKLVFEGLLIRKKGVG 71


>gi|158312743|ref|YP_001505251.1| MarR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108148|gb|ABW10345.1| transcriptional regulator, MarR family [Frankia sp. EAN1pec]
          Length = 157

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL+  A    Y  R+S++A+   +S   L +++  L + G+VE
Sbjct: 41 VLVQLAEAPGYQLRMSELAQKVLLSRSGLTRLVDRLEREGLVE 83


>gi|254230842|ref|ZP_04924169.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
 gi|308231564|ref|ZP_07412931.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|308369408|ref|ZP_07417681.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu002]
 gi|308370425|ref|ZP_07421453.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|308371684|ref|ZP_07425823.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|308372907|ref|ZP_07430354.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu005]
 gi|308374018|ref|ZP_07434540.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|308375172|ref|ZP_07442974.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu007]
 gi|308376414|ref|ZP_07438763.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|308377437|ref|ZP_07479165.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|308378650|ref|ZP_07483359.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|308379792|ref|ZP_07487592.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|308395580|ref|ZP_07492095.2| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu012]
 gi|124599901|gb|EAY58911.1| hypothetical protein TBCG_00487 [Mycobacterium tuberculosis C]
 gi|308216811|gb|EFO76210.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu001]
 gi|308327673|gb|EFP16524.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu002]
 gi|308332024|gb|EFP20875.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu003]
 gi|308335811|gb|EFP24662.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu004]
 gi|308339416|gb|EFP28267.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu005]
 gi|308343292|gb|EFP32143.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu006]
 gi|308347187|gb|EFP36038.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu007]
 gi|308351129|gb|EFP39980.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu008]
 gi|308355759|gb|EFP44610.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu009]
 gi|308359818|gb|EFP48669.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu010]
 gi|308363621|gb|EFP52472.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu011]
 gi|308367275|gb|EFP56126.1| transcriptional regulator, gntR-family [Mycobacterium tuberculosis
           SUMu012]
 gi|323721170|gb|EGB30232.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 238

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE---E 84
             +AE   ++   L + L  L + G++E   G      + R  + +T   VV+A      
Sbjct: 42  RDLAERLGVNRTSLRQGLARLQQMGLIEVRHGSG---SVVRDPEGLTHPAVVEALVRKLG 98

Query: 85  SFFVAECFASHKIDCPLVGS 104
             F+ E         PL+G 
Sbjct: 99  PDFLVELLEIRAALGPLIGR 118


>gi|86356502|ref|YP_468394.1| IclR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280604|gb|ABC89667.1| probable transcriptional regulator protein, IclR family
          [Rhizobium etli CFN 42]
          Length = 264

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          + VL+    H D P R + I          L + L  LV+ G++E
Sbjct: 19 LMVLLDLVTHADTPLRFTDILARAGQPRGTLHRQLSHLVEEGLLE 63


>gi|7542434|gb|AAF63446.1|AF218267_3 ArgR-like transcriptional regulator [Pseudomonas putida]
          Length = 351

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 10  GIR-VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
           G+R  L     + + P  I +IAE   +S   L ++ +  V+A
Sbjct: 238 GVRLALELMHANIEDPIGIDEIAEHAGLSRRHLERLFRRHVQA 280


>gi|15891477|ref|NP_357149.1| GntR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15159889|gb|AAK89934.1| transcriptional regulator, GntR family [Agrobacterium tumefaciens
           str. C58]
          Length = 242

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 20/95 (21%)

Query: 2   HLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
            ++      +R     A       D     S++     +S   + + +  L   G+VE  
Sbjct: 15  KISS----ALR--RDLAEGVFRPGDRLPSESELTREYSVSRTVVREAIAILRADGLVEAR 68

Query: 58  RGRRGGVRL-CRPADQITILD--------VVKATE 83
           +G  G   +  +PA ++   D        V++  E
Sbjct: 69  KGA-GVFAIEAKPAKEVPFNDLAVGRISSVIELLE 102


>gi|77457050|ref|YP_346555.1| GntR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381053|gb|ABA72566.1| putative GntR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 274

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 17  CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------GGVRLC 67
                D     S I EA  +S   + + +  L  AG VET  G            G R+ 
Sbjct: 59  LLKRGDKLPTESAIMEAHGVSRTVVREAISRLQAAGQVETRHGIGTFVLDTPSPSGFRI- 117

Query: 68  RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            PA  +T+ DV+   E    +     S  +      +  L + +R AL+A  D +   S
Sbjct: 118 DPATVVTLRDVLAILELRISLE--VESAGLAAQRRSAEQL-AAMRAALDALNDSVAHAS 173


>gi|54025866|ref|YP_120108.1| hypothetical protein nfa38960 [Nocardia farcinica IFM 10152]
 gi|54017374|dbj|BAD58744.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 88

 Score = 33.8 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGR 60
          RV+            I+++ ++   +   + + ++ L   G++ E  RGR
Sbjct: 7  RVMAALNEQPGKQLTIAELIDSTGDNPAHVRRAVKALADRGLLAEATRGR 56


>gi|332520093|ref|ZP_08396557.1| AsnC-like transcription regulator [Lacinutrix algicola 5H-3-7-4]
 gi|332044652|gb|EGI80846.1| AsnC-like transcription regulator [Lacinutrix algicola 5H-3-7-4]
          Length = 156

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R LM      D    + +IA    IS   + + L+ L K+G++   +
Sbjct: 18 LRALM-----ADARTSVLEIARQVGISGAAIHQRLRKLEKSGLIAGSK 60


>gi|307269467|ref|ZP_07550807.1| HTH domain protein [Enterococcus faecalis TX4248]
 gi|306514215|gb|EFM82790.1| HTH domain protein [Enterococcus faecalis TX4248]
          Length = 121

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +L+     +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L
Sbjct: 10 ILIQL--QSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFL 60


>gi|300112991|ref|YP_003759566.1| heat-inducible transcription repressor HrcA [Nitrosococcus
          watsonii C-113]
 gi|299538928|gb|ADJ27245.1| heat-inducible transcription repressor HrcA [Nitrosococcus
          watsonii C-113]
          Length = 349

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAE--ACCISELFLFKILQPLVKAGIVET 56
          ++ ++ C I +  P     ++      +S   +  ++  L + G+V +
Sbjct: 18 LKAMVECYIRDGEPVGSRTLSRESRLDLSPATIRNVMADLEELGLVFS 65


>gi|169334126|ref|ZP_02861319.1| hypothetical protein ANASTE_00519 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258843|gb|EDS72809.1| hypothetical protein ANASTE_00519 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 149

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          VL+      +    +S +AE    S   + +I+  L   G ++ VR
Sbjct: 41 VLVVIDTFKEEYPSLSDVAEMVGSSHQNVKQIVNKLTDKGYLQIVR 86


>gi|241113521|ref|YP_002973356.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240861729|gb|ACS59395.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 117

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + +L   A   +    +S +A+   +S+    + L  L +  +V+T R  +
Sbjct: 32 LHILHLLA---EGEMSVSVLADEVGLSQSSTSQHLAILREQELVQTRRAAQ 79


>gi|126699221|ref|YP_001088118.1| GntR family transcriptional regulator [Clostridium difficile 630]
 gi|254975249|ref|ZP_05271721.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092639|ref|ZP_05322117.1| GntR family transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100745|ref|ZP_05329722.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306629|ref|ZP_05350800.1| GntR family transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255314376|ref|ZP_05355959.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517055|ref|ZP_05384731.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650158|ref|ZP_05397060.1| GntR family transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683282|ref|YP_003214567.1| GntR family transcriptional regulator [Clostridium difficile
          CD196]
 gi|260686878|ref|YP_003218011.1| GntR family transcriptional regulator [Clostridium difficile
          R20291]
 gi|306520153|ref|ZP_07406500.1| GntR-family transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115250658|emb|CAJ68482.1| Transcriptional regulator, GntR family [Clostridium difficile]
 gi|260209445|emb|CBA62948.1| GntR-family transcriptional regulator [Clostridium difficile
          CD196]
 gi|260212894|emb|CBE04131.1| GntR-family transcriptional regulator [Clostridium difficile
          R20291]
          Length = 122

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                +  +AE   ++   + K L  L + G+V + R
Sbjct: 31 GSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQR 68


>gi|83590615|ref|YP_430624.1| IclR family transcriptional regulator [Moorella thermoacetica
          ATCC 39073]
 gi|83573529|gb|ABC20081.1| transcriptional regulator, IclR family [Moorella thermoacetica
          ATCC 39073]
          Length = 272

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           + +L   A  +     ++++A    + +  L  +L  L   G +E      G  RL   
Sbjct: 21 ALMILDLLAA-SQREMSLAELAREMELPKSTLHGLLSTLRDYGYIE-QSAFDGRYRLG-- 76

Query: 70 ADQITILDVVKAT 82
             I + ++  A 
Sbjct: 77 ---IRLFEIGNAV 86


>gi|83951610|ref|ZP_00960342.1| pyruvate dehydrogenase complex repressor [Roseovarius nubinhibens
          ISM]
 gi|83836616|gb|EAP75913.1| pyruvate dehydrogenase complex repressor [Roseovarius nubinhibens
          ISM]
          Length = 254

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + +L       +       +AE   +S   L + L  L   G+++T  G  
Sbjct: 21 LLILRGILRPGERLPSERDLAERLGVSRPSLREALAELQGKGLLQTRPGAG 71


>gi|116751196|ref|YP_847883.1| SOS-response transcriptional repressor LexA [Syntrophobacter
          fumaroxidans MPOB]
 gi|116700260|gb|ABK19448.1| SOS-response transcriptional repressor, LexA [Syntrophobacter
          fumaroxidans MPOB]
          Length = 207

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            +P  + +++E   IS       +  LV+ G ++   G+  G+ + R   +
Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78


>gi|330992035|ref|ZP_08315984.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          sp. SXCC-1]
 gi|329761056|gb|EGG77551.1| ArsR family transcriptional regulator ArsR1 [Gluconacetobacter
          sp. SXCC-1]
          Length = 117

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   + +      H         +A    + +  +   L  L +AG++ + R
Sbjct: 13 LSQSTR--LEIFRLLVRHEPDGLPAGDVARHLDMPQNTISAHLATLTRAGLLTSQR 66


>gi|325962298|ref|YP_004240204.1| GntR family transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468385|gb|ADX72070.1| transcriptional regulator, GntR family [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 246

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +A    +S   + K +  LV++G++   RG  
Sbjct: 45 DLAAQLNLSRPTMRKAMDELVRSGLLVRKRGVG 77


>gi|303240415|ref|ZP_07326932.1| transcriptional regulator, MarR family [Acetivibrio
          cellulolyticus CD2]
 gi|302591980|gb|EFL61711.1| transcriptional regulator, MarR family [Acetivibrio
          cellulolyticus CD2]
          Length = 151

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             +IS+++E   +S   +  IL  L K G+V+ VR
Sbjct: 49 GKIKISELSEKVNLSNSTVSGILDRLEKQGLVQRVR 84


>gi|296161198|ref|ZP_06844007.1| transcriptional regulator, ArsR family [Burkholderia sp. Ch1-1]
 gi|295888539|gb|EFG68348.1| transcriptional regulator, ArsR family [Burkholderia sp. Ch1-1]
          Length = 110

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
          +   I R L+   +         +IA+   +S   L   L+ L  AG+V +  +GR
Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVNSEQKGR 69


>gi|284042350|ref|YP_003392690.1| GntR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946571|gb|ADB49315.1| transcriptional regulator, GntR family [Conexibacter woesei DSM
          14684]
          Length = 134

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           L ++  + +R  +      D    + ++     I+   + K  + L   G+V    G  
Sbjct: 21 QLVRQVRHALR--LGLLREGDQLPTVKEVVAQLAINPNTVLKAYRELEHDGLVAAKPGVG 78


>gi|255021894|ref|ZP_05293904.1| transcriptional regulator, Crp/Fnr family [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968718|gb|EET26270.1| transcriptional regulator, Crp/Fnr family [Acidithiobacillus caldus
           ATCC 51756]
          Length = 227

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           P + + IA    I+   L ++L+ L +AGI+  + GR 
Sbjct: 176 PAKKATIAGRIGITPETLSRVLRRLREAGII-AIEGRH 212


>gi|153827770|ref|ZP_01980437.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 623-39]
 gi|148876615|gb|EDL74750.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 623-39]
          Length = 452

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|148553664|ref|YP_001261246.1| MarR family transcriptional regulator [Sphingomonas wittichii
          RW1]
 gi|148498854|gb|ABQ67108.1| transcriptional regulator, MarR family [Sphingomonas wittichii
          RW1]
          Length = 157

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          RVLM           +S+IAE   +    + KI+Q +   G+V 
Sbjct: 53 RVLMCL--KEGQATSVSEIAELAIVKLPTMTKIVQRMQADGLVT 94


>gi|78065779|ref|YP_368548.1| IclR family transcriptional regulator [Burkholderia sp. 383]
 gi|77966524|gb|ABB07904.1| transcriptional regulator, IclR family [Burkholderia sp. 383]
          Length = 211

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|73539271|ref|YP_299638.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122608|gb|AAZ64794.1| transcriptional regulator, GntR family [Ralstonia eutropha
          JMP134]
          Length = 247

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            +AE   ++   + + +Q L   G++++ RG  
Sbjct: 41 RDLAEQYDVARNTVREAIQRLAARGLLQSRRGAG 74


>gi|15901426|ref|NP_346030.1| transcriptional repressor CodY [Streptococcus pneumoniae TIGR4]
 gi|111657435|ref|ZP_01408186.1| hypothetical protein SpneT_02001364 [Streptococcus pneumoniae
           TIGR4]
 gi|48474611|sp|Q97PM1|CODY_STRPN RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|14973076|gb|AAK75670.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pneumoniae TIGR4]
          Length = 262

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|115351621|ref|YP_773460.1| IclR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115281609|gb|ABI87126.1| transcriptional regulator, IclR family [Burkholderia ambifaria
           AMMD]
          Length = 247

 Score = 33.8 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
           L         P  ++++A    +       + + LV  G +  VR +RGG    R    I
Sbjct: 12  LFELFAAERRPLPLTELARLLNVPASSCLAMARTLVSRGYLYEVR-KRGGYYPTRRLQTI 70

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
                + AT+    +      H     L  +   T+VL K         T  +   +V +
Sbjct: 71  AAA--IDATDPVVDIV-----HPHLVALRDASRETAVLGKIQG------TSVTYLDVVES 117

Query: 134 RSSIK 138
             +I+
Sbjct: 118 EQAIR 122


>gi|325962817|ref|YP_004240723.1| hypothetical protein Asphe3_14150 [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323468904|gb|ADX72589.1| hypothetical protein Asphe3_14150 [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
          +  A+  D    ++ IA    I+     +IL+ L  AG +E  R GRR
Sbjct: 33 VLLAVARDPDILVADIAGRVGITTRAALQILKDLETAGYLERARVGRR 80


>gi|323494410|ref|ZP_08099519.1| DeoR family transcriptional regulator [Vibrio brasiliensis LMG
          20546]
 gi|323311340|gb|EGA64495.1| DeoR family transcriptional regulator [Vibrio brasiliensis LMG
          20546]
          Length = 240

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL 66
          +  +    ++++ +    S   + + L  L   G V ++  GR GG+RL
Sbjct: 14 LRRNGTATVAELVQEVGASRRTVLRDLNVLRDEGFVIDSEPGRGGGLRL 62


>gi|310641949|ref|YP_003946707.1| marr family transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309246899|gb|ADO56466.1| MarR family transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 186

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 21/121 (17%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            LT R  Y   +++  A   +    +  IA     S+    K++  L   G + T   + 
Sbjct: 37  KLTSR-QY--MIMLAIAHLPEDETTLVNIARKLETSKQSAQKLIVNLENKGYLITTPSK- 92

Query: 62  GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
                 R    I +            + E      ++C     C +  +  +      +V
Sbjct: 93  ------RDKRAINV-----------EITELGKRVMLECGEKAICLMADIFNEFTTEELEV 135

Query: 122 L 122
           L
Sbjct: 136 L 136


>gi|296393959|ref|YP_003658843.1| DtxR family iron (metal) dependent repressor [Segniliparus
          rotundus DSM 44985]
 gi|296181106|gb|ADG98012.1| iron (metal) dependent repressor, DtxR family [Segniliparus
          rotundus DSM 44985]
          Length = 233

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 8  DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          DY ++VL      ++ P     +AE   +S     + ++ LV  G+VE  R   G V L 
Sbjct: 19 DY-LKVLWNLGEWSEAPVTTKLLAEKLGVSASTASEGVRKLVDQGLVEHER--YGSVSLT 75

Query: 68 RPADQITILDVVK 80
          +      +  VV+
Sbjct: 76 QDGRAAAVS-VVR 87


>gi|288932138|ref|YP_003436198.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM
          10642]
 gi|288894386|gb|ADC65923.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           +  L+             +++E   I    ++++L+ L + G VE   G
Sbjct: 23 ALVALLRL-----NEATAREVSENTGIPRTKVYEVLRRLAEKGFVEIQPG 67


>gi|251783239|ref|YP_002997544.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391871|dbj|BAH82330.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323127964|gb|ADX25261.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|258573149|ref|XP_002540756.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901022|gb|EEP75423.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 423

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQP 47
           +  D    IS+IA+ C ISE  L +IL+ 
Sbjct: 105 VPPDGQISISEIAKKCNISEEVLARILRQ 133


>gi|229589468|ref|YP_002871587.1| putative GntR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361334|emb|CAY48201.1| putative GntR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 259

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------AD 71
             D     SQ+     +S   + +++  L  AG VET  G  G   L  P          
Sbjct: 46  RGDQLPTESQLMAEQGVSRTVVREVMSRLQAAGQVETRHGI-GSFVLSPPCTDSFRLDPS 104

Query: 72  Q-ITILDVVKATEESFFV 88
             +TI +V+   E    +
Sbjct: 105 TMVTIREVLAILELRIAL 122


>gi|258510649|ref|YP_003184083.1| transcriptional regulator, GntR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477375|gb|ACV57694.1| transcriptional regulator, GntR family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 137

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    +  +A +  I+   + K  Q L ++ ++E VRGR 
Sbjct: 35 GDRLPSVRDLAVSLAINHNTVAKAYQELERSRVIEVVRGRG 75


>gi|222153638|ref|YP_002562815.1| transcriptional repressor CodY [Streptococcus uberis 0140J]
 gi|254765874|sp|B9DVH6|CODY_STRU0 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|222114451|emb|CAR43273.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           uberis 0140J]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|221207776|ref|ZP_03580783.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD2]
 gi|221172273|gb|EEE04713.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD2]
          Length = 116

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +   I R L+    +        +IA+   +S   L   L+ L  AG+V++ +
Sbjct: 20 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 69


>gi|171185535|ref|YP_001794454.1| ArsR family transcriptional regulator [Thermoproteus neutrophilus
           V24Sta]
 gi|170934747|gb|ACB40008.1| transcriptional regulator, ArsR family [Thermoproteus neutrophilus
           V24Sta]
          Length = 293

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           +    P   S++A    +S   +   L+ L +AG+V + 
Sbjct: 242 VEERGPLTASEVAALTGLSPRTVRYALEKLREAGLVRST 280


>gi|169632101|ref|YP_001705837.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii SDF]
 gi|169797723|ref|YP_001715516.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii AYE]
 gi|184156414|ref|YP_001844753.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii ACICU]
 gi|213155486|ref|YP_002317531.1| L-lactate utilization transcriptional repressor [Acinetobacter
          baumannii AB0057]
 gi|215485075|ref|YP_002327316.1| Putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii AB307-0294]
 gi|239503802|ref|ZP_04663112.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii AB900]
 gi|260557672|ref|ZP_05829886.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter baumannii ATCC 19606]
 gi|301346086|ref|ZP_07226827.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii AB056]
 gi|301511328|ref|ZP_07236565.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii AB058]
 gi|301594186|ref|ZP_07239194.1| DNA-binding transcriptional repressor LldR [Acinetobacter
          baumannii AB059]
 gi|332853801|ref|ZP_08434984.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6013150]
 gi|332869243|ref|ZP_08438668.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6013113]
 gi|332875542|ref|ZP_08443355.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6014059]
 gi|169150650|emb|CAM88559.1| transcriptional repressor for L-lactate utilization (GntR family)
          [Acinetobacter baumannii AYE]
 gi|169150893|emb|CAO99499.1| transcriptional repressor for L-lactate utilization (GntR family)
          [Acinetobacter baumannii]
 gi|183208008|gb|ACC55406.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|193075982|gb|ABO10563.2| L-lactate utilization transcriptional repressor (GntR family)
          [Acinetobacter baumannii ATCC 17978]
 gi|213054646|gb|ACJ39548.1| L-lactate utilization transcriptional repressor [Acinetobacter
          baumannii AB0057]
 gi|213987593|gb|ACJ57892.1| Putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii AB307-0294]
 gi|260408845|gb|EEX02149.1| transcriptional repressor for L-lactate utilization
          [Acinetobacter baumannii ATCC 19606]
 gi|332728393|gb|EGJ59770.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6013150]
 gi|332732865|gb|EGJ64078.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6013113]
 gi|332736245|gb|EGJ67259.1| putative L-lactate dehydrogenase operon regulatory protein
          [Acinetobacter baumannii 6014059]
          Length = 250

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1  MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +    ++ L+   +     D      Q+A +  +S   L + +Q L   G++ + 
Sbjct: 1  MRISDQVVMKLQALIEERHM-KKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLISR 59

Query: 58 RG 59
          RG
Sbjct: 60 RG 61


>gi|241113077|ref|YP_002972912.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861285|gb|ACS58951.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 412

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R ++   IH   P   ++IA     ++  + +I+  L+  G++   R R G   L     
Sbjct: 26 RAIVLRCIHRQAPISRAEIARRTGFTKPAIARIVDRLLDEGLIMEARRRHG---LRGQP- 81

Query: 72 QITILDVVKATEESFFVAECFA 93
                   A E       CFA
Sbjct: 82 ---------AIELEINPDACFA 94


>gi|161522409|ref|YP_001585338.1| ArsR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189348715|ref|YP_001941911.1| ArsR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|221198547|ref|ZP_03571592.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD2M]
 gi|160345962|gb|ABX19046.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          ATCC 17616]
 gi|189338853|dbj|BAG47921.1| ArsR family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|221180998|gb|EEE13400.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD2M]
          Length = 113

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +   I R L+    +        +IA+   +S   L   L+ L  AG+V++ +
Sbjct: 17 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 66


>gi|50914851|ref|YP_060823.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10394]
 gi|94989143|ref|YP_597244.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS9429]
 gi|94991089|ref|YP_599189.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS10270]
 gi|94993036|ref|YP_601135.1| transcriptional repressor CodY [Streptococcus pyogenes MGAS2096]
 gi|50903925|gb|AAT87640.1| Transcription pleiotropic repressor [Streptococcus pyogenes
           MGAS10394]
 gi|94542651|gb|ABF32700.1| transcription pleiotropic repressor [Streptococcus pyogenes
           MGAS9429]
 gi|94544597|gb|ABF34645.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes
           MGAS10270]
 gi|94546544|gb|ABF36591.1| Transcription pleiotropic repressor codY [Streptococcus pyogenes
           MGAS2096]
          Length = 281

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 222 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 267


>gi|110347010|ref|YP_665828.1| ArsR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283121|gb|ABG61181.1| transcriptional regulator, ArsR family [Chelativorans sp. BNC1]
          Length = 124

 Score = 33.8 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           R+LM    H         IA    +    +   L  L +AG++E  R  R  +   R  
Sbjct: 22 FRLLME---HEPGGLPAGDIARHLAVPHNTMSTHLAILSRAGLIEAERHSRSIIYRAR-- 76

Query: 71 DQITILDVVKATEESFFVAECFASHKIDC 99
               LD V+     F V +C   H   C
Sbjct: 77 -----LDAVRDLTG-FLVKDCCGGHPEIC 99


>gi|325920631|ref|ZP_08182543.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325548887|gb|EGD19829.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 297

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
           R  MY   ++D   RI+++A+    S  ++ K  Q L
Sbjct: 177 RARMYLEGNSDRVVRIAELAQLTNFSSWYVSKTFQSL 213


>gi|309951508|gb|ADO95174.1| transcriptional regulator/arsenate reductase bifunctional protein
          [Sinorhizobium sp. M14]
          Length = 273

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          H+        I     + +  +   L  L +AG+V+T R
Sbjct: 28 HSPEGLPSGDIGRLLDVPQNTMSSHLNVLKRAGLVQTQR 66


>gi|319638039|ref|ZP_07992803.1| regulatory protein ArsR [Neisseria mucosa C102]
 gi|317400684|gb|EFV81341.1| regulatory protein ArsR [Neisseria mucosa C102]
          Length = 100

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          L      ++ P+ ++++AE+  + +  +   L  L +AG+V
Sbjct: 26 LAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66


>gi|302343271|ref|YP_003807800.1| LexA family transcriptional regulator [Desulfarculus baarsii DSM
          2075]
 gi|301639884|gb|ADK85206.1| transcriptional repressor, LexA family [Desulfarculus baarsii DSM
          2075]
          Length = 207

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            +P  + +++E   IS       +  LV+ G ++   G+  G+ + R   +
Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78


>gi|298247454|ref|ZP_06971259.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
 gi|297550113|gb|EFH83979.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
          Length = 156

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    + Q+A    I+   + K    L + G++E+ +G  
Sbjct: 35 GDQLPTVRQLASELTIAPNTIVKAYDELARLGLIESRQGVG 75


>gi|295676948|ref|YP_003605472.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002]
 gi|295436791|gb|ADG15961.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002]
          Length = 308

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+L   A H+D P  + ++A    +      +IL  +V   +V+  R   G  RL    
Sbjct: 50  MRLLDALAAHSD-PVSLKELALRTELHPSTAHRILNDMVMCRLVD--RSDPGTYRLGMRL 106

Query: 71  DQITILDVVKA 81
            +  + ++VKA
Sbjct: 107 LE--LGNLVKA 115


>gi|295395125|ref|ZP_06805334.1| IclR family transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
 gi|294972073|gb|EFG47939.1| IclR family transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
          Length = 255

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
           + +L + A  ++ P     IA +  +     ++IL  L + G+V  V     G  L 
Sbjct: 10 AVAILRHLAA-SNRPISAGAIARSGNVPRSSAYEILNVLEELGLVTKV---DAGYLLG 63


>gi|300088777|ref|YP_003759299.1| LexA family transcriptional regulator [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299528510|gb|ADJ26978.1| transcriptional repressor, LexA family [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
          Length = 207

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            +P  + +++E   IS       +  LV+ G ++   G+  G+ + R   +
Sbjct: 27 KGFPPTVKELSEIFEISPASAHDRINQLVRKGYLKREDGKSRGIAVARRPSE 78


>gi|295676212|ref|YP_003604736.1| transcriptional regulator, IclR family [Burkholderia sp.
          CCGE1002]
 gi|295436055|gb|ADG15225.1| transcriptional regulator, IclR family [Burkholderia sp.
          CCGE1002]
          Length = 281

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A  +  P    ++AE   I +  + +I   LV AG +
Sbjct: 33 GLTVLRAVAAAH-APLSNRELAELTGIPKPTVSRITATLVGAGFL 76


>gi|291614779|ref|YP_003524936.1| ArsR family transcriptional regulator [Sideroxydans
          lithotrophicus ES-1]
 gi|291584891|gb|ADE12549.1| transcriptional regulator, ArsR family [Sideroxydans
          lithotrophicus ES-1]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +L   A+       ++++A+   IS   + K L+ L +AG++   R
Sbjct: 21 ILARLAL---GETSVAELAKPFSISPPAVTKHLKVLQRAGLITQGR 63


>gi|313125908|ref|YP_004036178.1| transcriptional regulator [Halogeometricum borinquense DSM 11551]
 gi|312292273|gb|ADQ66733.1| transcriptional regulator [Halogeometricum borinquense DSM 11551]
          Length = 353

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          Y A+        S+IA+   I +  ++  ++ L   G+VE
Sbjct: 26 YLAVLEHGELTASEIADRTDIPQPRVYDTVRSLSDRGLVE 65


>gi|226314255|ref|YP_002774151.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097205|dbj|BAH45647.1| probable transcriptional regulator [Brevibacillus brevis NBRC
          100599]
          Length = 235

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPA 70
          RV +  ++ N      S++A    I+       L  LV+ G++ +   GR    RL  P 
Sbjct: 19 RVSILISLMNGKALPASELARNAKITPQTASTHLAKLVEGGLLVSESHGRHRYYRLASP- 77

Query: 71 DQITILDVVKATE 83
                DV  A E
Sbjct: 78 ------DVAHALE 84


>gi|225023150|ref|ZP_03712342.1| hypothetical protein EIKCOROL_00002 [Eikenella corrodens ATCC
          23834]
 gi|224944069|gb|EEG25278.1| hypothetical protein EIKCOROL_00002 [Eikenella corrodens ATCC
          23834]
          Length = 100

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
            L      ++ P+ ++++AE+  + +  +   L  L +AG+V
Sbjct: 24 HRLAVLCKLHERPHNVTELAESSGLPQAAMSSQLALLREAGLV 66


>gi|255021243|ref|ZP_05293293.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
 gi|209574034|gb|ACI62955.1| transcriptional activator PhoB family [Acidithiobacillus caldus]
 gi|254969358|gb|EET26870.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC-----ISELFLFKILQPLVK----AG 52
            L++R     R+  Y A+H       ++IA         + E  +   +  L K    AG
Sbjct: 184 QLSRRI---FRLFHYLALHPGQTFSAAEIAHHLSDGRKFVQENTIAAQIHRLRKALEAAG 240

Query: 53  ---IVETVRGRRGGVRLCRPAD 71
               +ETV G   G RL  PA 
Sbjct: 241 ADIWLETVHGF--GYRLSVPAS 260


>gi|182416872|ref|ZP_02948258.1| catabolite gene activator [Clostridium butyricum 5521]
 gi|237668081|ref|ZP_04528065.1| cyclic nucleotide-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182379334|gb|EDT76833.1| catabolite gene activator [Clostridium butyricum 5521]
 gi|237656429|gb|EEP53985.1| cyclic nucleotide-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 229

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVE 55
           S+IAE    S   L ++L    K GI+E
Sbjct: 179 SEIAELLGTSYRHLNRVLNKFCKEGILE 206


>gi|167566017|ref|ZP_02358933.1| transcriptional regulator, ArsR family protein [Burkholderia
          oklahomensis EO147]
          Length = 115

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R+LM C +       +S I     I +  L + L  L    +V+T R G+     L    
Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLAVLRDNALVDTRRDGKNIYYALASQP 91

Query: 71 DQITILDVV 79
            I I+ V+
Sbjct: 92 A-IAIMSVL 99


>gi|162149410|ref|YP_001603871.1| ArsR family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787987|emb|CAP57591.1| putative transcriptional regulator, ArsR family
          [Gluconacetobacter diazotrophicus PAl 5]
          Length = 130

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            R+L+    H         IA    + +  L   L  L ++G+V   R
Sbjct: 36 AFRLLV---RHEPEGLPAGGIAHRLGVPQNTLSTHLAILARSGLVRATR 81


>gi|118576206|ref|YP_875949.1| transcriptional regulator [Cenarchaeum symbiosum A]
 gi|118194727|gb|ABK77645.1| transcriptional regulator [Cenarchaeum symbiosum A]
          Length = 255

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 1  MHLTKRTD----------YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
          M +T RT           Y IR   Y  +        S+I++   +S   ++++L  L +
Sbjct: 1  MRITDRTRKALTSIGLTGYEIRA--YMELLRSGGMTASEISQRSGVSYSKIYEVLGSLEE 58

Query: 51 AGIVET 56
           G   +
Sbjct: 59 KGWTSS 64


>gi|52080752|ref|YP_079543.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786123|ref|YP_091952.1| hypothetical protein BLi02379 [Bacillus licheniformis ATCC 14580]
 gi|319645290|ref|ZP_07999523.1| BirA protein [Bacillus sp. BT1B_CT2]
 gi|52003963|gb|AAU23905.1| transcriptional regulator and biotin acetyl-CoA-carboxylase
          synthetase [Bacillus licheniformis ATCC 14580]
 gi|52348625|gb|AAU41259.1| BirA [Bacillus licheniformis ATCC 14580]
 gi|317393099|gb|EFV73893.1| BirA protein [Bacillus sp. BT1B_CT2]
          Length = 327

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQIT 74
          +       +I+E    S   ++K ++ L K+G  +E VR  + G ++ +  D+IT
Sbjct: 17 DGEFISGQKISEELGCSRTAVWKHIEDLRKSGYELEAVR--KLGYKMIKKPDKIT 69


>gi|116628143|ref|YP_820762.1| GntR family transcriptional regulator, putative [Streptococcus
          thermophilus LMD-9]
 gi|116101420|gb|ABJ66566.1| transcriptional regulator, GntR family [Streptococcus
          thermophilus LMD-9]
 gi|312278749|gb|ADQ63406.1| Transcriptional regulator, GntR family [Streptococcus
          thermophilus ND03]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                + + A+   ++   + +  Q L K G+V + R
Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68


>gi|332672135|ref|YP_004455143.1| ArsR family transcriptional regulator [Cellulomonas fimi ATCC
          484]
 gi|332341173|gb|AEE47756.1| transcriptional regulator, ArsR family [Cellulomonas fimi ATCC
          484]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R+L   A H      +  + E   +S+  +   L+ L +AG++ 
Sbjct: 46 LRLLSLIAAHAGGEACVCDLTEPVGLSQPTVSHHLKQLTEAGLLT 90


>gi|331005750|ref|ZP_08329110.1| Biotin-protein ligase [gamma proteobacterium IMCC1989]
 gi|330420439|gb|EGG94745.1| Biotin-protein ligase [gamma proteobacterium IMCC1989]
          Length = 325

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  +      + VL   A  +   +  S+I +A  +S   ++K LQ L+  G+ VE+V+G
Sbjct: 1  MKQST-----LLVLNCLA--DGCFHSGSEIGDAAGVSRAAIWKQLQKLIDIGLDVESVKG 53

Query: 60 RRGGVRL 66
          +  G RL
Sbjct: 54 K--GYRL 58


>gi|327539624|gb|EGF26232.1| Ribonuclease BN [Rhodopirellula baltica WH47]
          Length = 603

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI---VETVRGRRGGVRLCRPAD 71
           +  A          ++++   +S   + ++   L++A     V T  G+   + L RPA+
Sbjct: 470 VAIAFAEGEAVGRQELSDRLGLSSRVVHEMETRLIEANFLRRVVTGAGQENQLTLARPAN 529

Query: 72  QITILDVVK 80
            I + +V++
Sbjct: 530 NILLAEVMR 538


>gi|300711992|ref|YP_003737806.1| hypothetical protein HacjB3_13165 [Halalkalicoccus jeotgali B3]
 gi|299125675|gb|ADJ16014.1| hypothetical protein HacjB3_13165 [Halalkalicoccus jeotgali B3]
          Length = 203

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
           M  A+  +     S IAE   +S   +      L +AG++     R  G  + RP   I+
Sbjct: 120 MVLALLANPATTGSAIAERLDVSTATVSNTAADLEEAGLLT----RSNGYAVERPETLIS 175

Query: 75  IL 76
           +L
Sbjct: 176 LL 177


>gi|294630542|ref|ZP_06709102.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
 gi|292833875|gb|EFF92224.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
          Length = 224

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
           +       + +IAE   +S   + + L  L   G++E  + R  G R+     + +  D 
Sbjct: 47  LQPGQEFTVKEIAEQYGVSATPVREALVDLSAQGLLEADQHR--GFRV----HEYSPADF 100

Query: 79  VKATEESFFVAE 90
           V+  E    V +
Sbjct: 101 VEMIEARGLVVD 112


>gi|294085080|ref|YP_003551840.1| ROK family transcriptional regulator [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292664655|gb|ADE39756.1| transcriptional regulator, ROK family [Candidatus
          Puniceispirillum marinum IMCC1322]
          Length = 413

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           DY  +V++Y   H       ++IA +  ++   +  I+  L+KAG++++ 
Sbjct: 14 GDYNEKVVLYHVRHQKQ-VTKAEIARSSGLAAQTVSVIVNRLLKAGLLKSS 63


>gi|283769218|ref|ZP_06342122.1| transcriptional regulator, DeoR family [Bulleidia extructa W1219]
 gi|283104194|gb|EFC05573.1| transcriptional regulator, DeoR family [Bulleidia extructa W1219]
          Length = 299

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y           S++A+   +S   +++ +  +  AGI +  ++G+ GG+ +   
Sbjct: 7  FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSISSAGIPIYALQGKGGGIEIAED 64


>gi|311744319|ref|ZP_07718123.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
 gi|311312492|gb|EFQ82405.1| MarR family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
          Length = 159

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +++C +    P  IS++A A  +S     + +  LV+ G+VE
Sbjct: 42 MLHCVMRQGEPVAISELARAVGLSTAAAGRNVDQLVRLGLVE 83


>gi|262165748|ref|ZP_06033485.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          mimicus VM223]
 gi|262025464|gb|EEY44132.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          mimicus VM223]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L  P D 
Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66

Query: 73 ITI 75
          ++ 
Sbjct: 67 LSF 69


>gi|290963236|ref|YP_003494418.1| MarR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260652762|emb|CBG75895.1| putative MarR family transcriptional regulator [Streptomyces
           scabiei 87.22]
          Length = 187

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
              +YG+  +   +       R+S +A     S   L +++  L + G V 
Sbjct: 63  THFEYGV--MAALSESPRRELRMSDLAACAEGSLSRLSQVVARLERKGYVH 111


>gi|302548195|ref|ZP_07300537.1| GntR family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465813|gb|EFL28906.1| GntR family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 225

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 29  QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR--PADQITILDVVKATEESF 86
           +IAE   +S   + + L+ L + G+V    G RG +R+ +  P +   +  V +A E   
Sbjct: 42  EIAEHLSVSRGTVREALRHLQQEGLVTA--GARGMLRVSQLTPTETRELFQVREALEG-L 98

Query: 87  FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
            +A+  AS +       +  L   L+K  +AF       +
Sbjct: 99  AIAQIIASPR---RKDAAEALRKALKKLQDAFESGADLAT 135


>gi|322420290|ref|YP_004199513.1| regulatory protein GntR HTH [Geobacter sp. M18]
 gi|320126677|gb|ADW14237.1| regulatory protein GntR HTH [Geobacter sp. M18]
          Length = 240

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG---VRLCRPADQITILD 77
           +      ++A+   +S   + + L  L  +G+VET +G  GG     L   A  + + +
Sbjct: 31 GEKLPPERELADMFGVSRPSVREALNILTSSGLVETYQG--GGTLVRSLVENAAGMPLTE 88

Query: 78 VVKATEESFFV 88
          +++  +    +
Sbjct: 89 LIR-IDGDRAL 98


>gi|229821448|ref|YP_002882974.1| ArsR family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229567361|gb|ACQ81212.1| transcriptional regulator, ArsR family [Beutenbergia cavernae DSM
          12333]
          Length = 183

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET---VRGRRG 62
           D P    Q+A+A  +    L   ++ LV+ G +E+    RG RG
Sbjct: 30 KDTPLTNQQMADALGVPPATLLHHVRLLVERGFLESLPVRRGARG 74


>gi|256392989|ref|YP_003114553.1| DeoR family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256359215|gb|ACU72712.1| regulatory protein DeoR [Catenulispora acidiphila DSM 44928]
          Length = 396

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
               R++ IA    +S + + + +  L   G++E V    GG+RL R A 
Sbjct: 17 RGPLLRVTDIARTLGVSAVTVRRDVAQLADDGVIERV---HGGIRLPRAAA 64


>gi|227891327|ref|ZP_04009132.1| transcriptional regulator CzrA [Lactobacillus salivarius ATCC
          11741]
 gi|227866905|gb|EEJ74326.1| transcriptional regulator CzrA [Lactobacillus salivarius ATCC
          11741]
          Length = 113

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64
           T Y I  L+Y     +    +S+I     +S+  +   L+ L + G+V   R G+R   
Sbjct: 36 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 90

Query: 65 RLC 67
           L 
Sbjct: 91 SLA 93


>gi|313126625|ref|YP_004036895.1| transcriptional regulator [Halogeometricum borinquense DSM 11551]
 gi|312292990|gb|ADQ67450.1| predicted transcriptional regulator [Halogeometricum borinquense
          DSM 11551]
          Length = 208

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGR 60
          A     P+  S++A+    S   +   L  L  AG+V       +V+GR
Sbjct: 51 AALQREPSTASELADTVDTSLQNIRHHLDNLRNAGLVRVADTRYSVKGR 99


>gi|225868844|ref|YP_002744792.1| DNA-bind protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702120|emb|CAW99787.1| putative DNA-bind protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 299

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y           S++A+   +S   +++ +  +  AGI +  ++G+ GG+ +   
Sbjct: 7  FRILYYI--LEKGKVTASELADKFEVSVRTIYRDIDSISSAGIPIYALQGKGGGIEIAED 64


>gi|212225019|ref|YP_002308255.1| hypothetical protein TON_1867 [Thermococcus onnurineus NA1]
 gi|212009976|gb|ACJ17358.1| hypothetical protein TON_1867 [Thermococcus onnurineus NA1]
          Length = 335

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          ++  T   +RVL         P  + +++    +S   L  I + L + G++E
Sbjct: 19 ISMLTRAELRVLSVLH----EPATLKELSGQLGVSRSRLSIIARSLEQKGLIE 67


>gi|315231712|ref|YP_004072148.1| HTH-type transcriptional regulator Ptr2 [Thermococcus barophilus
          MP]
 gi|315184740|gb|ADT84925.1| HTH-type transcriptional regulator Ptr2 [Thermococcus barophilus
          MP]
          Length = 141

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          RV++   +  D     ++IA+   ISE  + K ++ L +AGI++
Sbjct: 7  RVIIDM-LTKDARTPFTEIAKVLGISETAVRKRVRALEEAGIIK 49


>gi|239918528|ref|YP_002958086.1| transcriptional regulator, ArsR family [Micrococcus luteus NCTC
          2665]
 gi|281415263|ref|ZP_06247005.1| transcriptional regulator, ArsR family protein [Micrococcus
          luteus NCTC 2665]
 gi|239839735|gb|ACS31532.1| transcriptional regulator, ArsR family [Micrococcus luteus NCTC
          2665]
          Length = 121

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +R+L + A           + E   IS+  +   ++ LV AG++ 
Sbjct: 50 LRLLSHVAAQGCNSVCACDLTEPLGISQPTVSHHMKKLVDAGLLT 94


>gi|251799102|ref|YP_003013833.1| hypothetical protein Pjdr2_5136 [Paenibacillus sp. JDR-2]
 gi|247546728|gb|ACT03747.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp. JDR-2]
          Length = 306

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  ++Y  ++N+     S+++    +S+  +++ ++ +  AGI V + +G
Sbjct: 1  MKLER-----LISIIYLLLNNE-VVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 VNGGY 59


>gi|68535092|ref|YP_249797.1| putative DNA-binding protein [Corynebacterium jeikeium K411]
 gi|68262691|emb|CAI36179.1| putative DNA-binding protein [Corynebacterium jeikeium K411]
          Length = 463

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  P     +AEA  +S   + + LQ +  AG+V   RG  
Sbjct: 409 SGRPMSTGDVAEALGLSAPPVRRALQAMRDAGLVH-WRGNG 448


>gi|57642125|ref|YP_184603.1| ArsR family transcriptional regulator [Thermococcus kodakarensis
          KOD1]
 gi|57160449|dbj|BAD86379.1| predicted transcription regulator, ArsR family [Thermococcus
          kodakarensis KOD1]
          Length = 102

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           A   + P+   Q+A+   ++   +   L  L K G+V +   R G
Sbjct: 25 IAALLERPSNARQLAKRLGLNYTTVRYHLDILQKNGLVTSTENRYG 70


>gi|16080556|ref|NP_391383.1| GntR family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221311453|ref|ZP_03593300.1| hypothetical protein Bsubs1_18961 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221315780|ref|ZP_03597585.1| hypothetical protein BsubsN3_18877 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221320695|ref|ZP_03601989.1| hypothetical protein BsubsJ_18840 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221324980|ref|ZP_03606274.1| hypothetical protein BsubsS_18996 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81669158|sp|O34817|YVOA_BACSU RecName: Full=HTH-type transcriptional repressor yvoA
 gi|283806768|pdb|2WV0|A Chain A, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806769|pdb|2WV0|B Chain B, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806770|pdb|2WV0|C Chain C, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806771|pdb|2WV0|D Chain D, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806772|pdb|2WV0|E Chain E, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806773|pdb|2WV0|F Chain F, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806774|pdb|2WV0|G Chain G, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806775|pdb|2WV0|H Chain H, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806776|pdb|2WV0|I Chain I, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|283806777|pdb|2WV0|J Chain J, Crystal Structure Of The Gntr-Hutc Family Member Yvoa
          From Bacillus Subtilis
 gi|2618854|gb|AAC67283.1| YvoA [Bacillus subtilis]
 gi|2636016|emb|CAB15508.1| transcriptional regulator (GntR family) [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|291486055|dbj|BAI87130.1| hypothetical protein BSNT_05332 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 243

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D P     + AE   IS + + + L  LV  G++  ++GR 
Sbjct: 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71


>gi|325525588|gb|EGD03375.1| IclR family regulatory protein [Burkholderia sp. TJI49]
          Length = 250

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----GVRLCR 68
           L+   +       ++ +A    I +  L ++L  L   G+V    GR+     G RL R
Sbjct: 13 ALLEHLVQAGDAVSLADLARDVDIPKASLHRMLASLEAGGLVIREPGRKNAYAVGPRLAR 72


>gi|324999511|ref|ZP_08120623.1| transcriptional regulator, GntR family protein [Pseudonocardia sp.
           P1]
          Length = 242

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R+ +  A   +      Q+A    +S + +   +  LV  G++E++ G  GGV   RP 
Sbjct: 40  LRLAIALAEIPEGKLNQVQVARQLGVSRMPIRAAIPDLVAEGLLESLPG--GGVA-VRPL 96

Query: 71  DQITILDVVKA 81
            +  +  V + 
Sbjct: 97  TETDVRQVYEV 107


>gi|322411904|gb|EFY02812.1| Transcriptional regulator, GntR family protein [Streptococcus
          dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68


>gi|322373364|ref|ZP_08047900.1| transcriptional regulator, GntR family [Streptococcus sp. C150]
 gi|321278406|gb|EFX55475.1| transcriptional regulator, GntR family [Streptococcus sp. C150]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                + + A+   ++   + +  Q L K G+V + R
Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68


>gi|313892205|ref|ZP_07825798.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Dialister microaerophilus UPII 345-E]
 gi|329121623|ref|ZP_08250244.1| iron-dependent repressor [Dialister micraerophilus DSM 19965]
 gi|313119343|gb|EFR42542.1| iron dependent repressor, N-terminal DNA binding domain protein
          [Dialister microaerophilus UPII 345-E]
 gi|327468778|gb|EGF14255.1| iron-dependent repressor [Dialister micraerophilus DSM 19965]
          Length = 218

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2  HLTK-RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           LT  + DY ++  +Y            ++++   +S   + +++  L K G+++
Sbjct: 3  KLTSGKDDY-LKA-IYLITEEHEVVSNKELSDMLQVSPPSVSEMISKLQKQGLID 55


>gi|300916523|ref|ZP_07133255.1| FCD domain protein [Escherichia coli MS 115-1]
 gi|300416169|gb|EFJ99479.1| FCD domain protein [Escherichia coli MS 115-1]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|255262051|ref|ZP_05341393.1| transcriptional regulator, GntR family [Thalassiobium sp. R2A62]
 gi|255104386|gb|EET47060.1| transcriptional regulator, GntR family [Thalassiobium sp. R2A62]
          Length = 242

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PA--DQIT 74
           ++     +++ +   +S   + + L+ L    ++ T RG  GG  + R     A   QIT
Sbjct: 31  DERLPSEAELCDQFDVSRSTVREALKRLGAQSLIRTQRGATGGAFVNRLKFEDAYTQQIT 90

Query: 75  ILDVVKATEESFFVAECFAS 94
              ++ +  E  F   C A 
Sbjct: 91  TSTLLLSMNEVSFATACEAR 110


>gi|239928498|ref|ZP_04685451.1| two-component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291436823|ref|ZP_06576213.1| two-component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339718|gb|EFE66674.1| two-component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 226

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
           +H D P    +IAE   +S     + L+ L + G
Sbjct: 169 LHADGPLSAQEIAERTGVSRQTAQRYLKLLERTG 202


>gi|313116915|ref|YP_004038039.1| hypothetical protein Hbor_33800 [Halogeometricum borinquense DSM
          11551]
 gi|312294867|gb|ADQ68903.1| hypothetical protein Hbor_33800 [Halogeometricum borinquense DSM
          11551]
          Length = 307

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          D  + IS++A     SE +L + +  LV+ G+V T R
Sbjct: 14 DRGDTISELATKLDHSESYLSRAVADLVEKGLVYTER 50


>gi|222151615|ref|YP_002560771.1| hypothetical protein MCCL_1368 [Macrococcus caseolyticus JCSC5402]
 gi|222120740|dbj|BAH18075.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 157

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 22/121 (18%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR---------------GGVR 65
            D       ++E   IS   + + L+ L   G++ET RG                 GG  
Sbjct: 40  GDKLPSERHLSELLNISRSSIREALRALEILGVIETRRGEGTYLSDMDNNQFFELIGGYL 99

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNAFFDVLT 123
           +   A    I D +   E S      F  HK   +C    +  +  V  K L  +     
Sbjct: 100 ITSRAQTGEIKDFIHMIESSIT----FEEHKTIEECINTSNTIMFRVW-KLLKRYEATYD 154

Query: 124 Q 124
           +
Sbjct: 155 E 155


>gi|212638764|ref|YP_002315284.1| manganese transport transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212560244|gb|ACJ33299.1| Mn-dependent transcriptional regulator (DtxR family)
          [Anoxybacillus flavithermus WK1]
          Length = 162

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K++Q L K          G+V T +G++ G R
Sbjct: 33 IYILIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLVYEKYRGLVLTPKGKKIGKR 92

Query: 66 L 66
          L
Sbjct: 93 L 93


>gi|254468689|ref|ZP_05082095.1| transcriptional regulator, MarR-family [beta proteobacterium
          KB13]
 gi|207087499|gb|EDZ64782.1| transcriptional regulator, MarR-family [beta proteobacterium
          KB13]
          Length = 160

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          VL+    + D     S+IA+   +    +  I++ L+  G+++  R
Sbjct: 44 VLLVVWENEDTTVTASEIAKKLNLDAPTVTPIIKKLIDQGLIKKQR 89


>gi|167766829|ref|ZP_02438882.1| hypothetical protein CLOSS21_01337 [Clostridium sp. SS2/1]
 gi|317498816|ref|ZP_07957103.1| arsR family Bacterial regulatory protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167711583|gb|EDS22162.1| hypothetical protein CLOSS21_01337 [Clostridium sp. SS2/1]
 gi|291560595|emb|CBL39395.1| transcriptional regulator, ArsR family [butyrate-producing
          bacterium SSC/2]
 gi|316893879|gb|EFV16074.1| arsR family Bacterial regulatory protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 130

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+  T   +R+L Y   H +    +  IAEA  +S   +   L+ L + G++ + R
Sbjct: 44 LSDSTR--LRIL-YLLYHRE--VCVRNIAEAIEMSPPAVSHHLRSLKQLGVITSRR 94


>gi|158425015|ref|YP_001526307.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158331904|dbj|BAF89389.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 18 AIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          A        + +++AE   ++   + + L  L + G+VE   GR 
Sbjct: 47 ARPAGARLPVEAELAERFGVNRHTVRRALGVLTERGLVEATPGRG 91


>gi|149201552|ref|ZP_01878526.1| regulatory protein GntR, HTH [Roseovarius sp. TM1035]
 gi|149144600|gb|EDM32629.1| regulatory protein GntR, HTH [Roseovarius sp. TM1035]
          Length = 242

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELADHFAVSRPTVREALKRLAAQSLIRTQRGAFGG 73


>gi|146743438|gb|ABQ43165.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Ca]
          Length = 350

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
              P   ++IA+     S     + L+ L + G++E V G   G+RL +  ++
Sbjct: 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEE 74


>gi|146743442|gb|ABQ43168.1| LexA-Gal4 chimeric protein [Yeast expression vector pNIA-Cb]
          Length = 349

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 20 HNDYPNRISQIAEACCI-SELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
              P   ++IA+     S     + L+ L + G++E V G   G+RL +  ++
Sbjct: 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEE 74


>gi|145594712|ref|YP_001159009.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145304049|gb|ABP54631.1| transcriptional regulator, AraC family [Salinispora tropica
          CNB-440]
          Length = 281

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
          R + Y     D P  +++IA++  +S  +  ++ +
Sbjct: 7  RAIEYLWERYDRPLTLTEIADSAGLSRFYFARLFR 41


>gi|73537589|ref|YP_297956.1| regulatory protein, IclR [Ralstonia eutropha JMP134]
 gi|72120926|gb|AAZ63112.1| regulatory protein, IclR [Ralstonia eutropha JMP134]
          Length = 275

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 10 GIRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG----- 62
           +R+  L+      D+P  +  + E   + +  L ++LQ L  AG+V+    R G     
Sbjct: 19 ALRLFGLLEVIATKDHPFNLQALVEETGLPKPTLHRMLQQLEAAGMVQ----RNGDGRHY 74

Query: 63 --GVRLCRPAD 71
            G+RL R A+
Sbjct: 75 GTGLRLRRLAE 85


>gi|20094298|ref|NP_614145.1| phosphate uptake regulator [Methanopyrus kandleri AV19]
 gi|19887344|gb|AAM02075.1| Phosphate uptake regulator [Methanopyrus kandleri AV19]
          Length = 311

 Score = 33.8 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           D P+   +IAE   +S  ++ ++L+PL++ G V 
Sbjct: 19 RDRPSTQKEIAEKVGVSRRYVTELLRPLIEEGAVR 53


>gi|327481590|gb|AEA84900.1| GntR family transcriptional regulator [Pseudomonas stutzeri DSM
          4166]
          Length = 247

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           DY +          +     +++  A  +S + + + L+ L   G+V + +G+ 
Sbjct: 31 GDYAVH---------ERLPSENELMTAFGVSRITIRQALRDLHNEGLVFSAQGKG 76


>gi|322412616|gb|EFY03524.1| transcriptional repressor CodY [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|209884781|ref|YP_002288638.1| transcriptional regulator, IclR family [Oligotropha
          carboxidovorans OM5]
 gi|209872977|gb|ACI92773.1| transcriptional regulator, IclR family [Oligotropha
          carboxidovorans OM5]
          Length = 258

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 11 IRV--LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-----G 63
          +R   LM     +  P   +++++    S   + ++ Q L + G+V   R   G     G
Sbjct: 17 LRAFKLMEAIARSSTPLSATELSDLTGTSRPSVVRLCQTLQEEGLV--SRAIDGKSYTYG 74

Query: 64 VRLCRPADQITIL 76
           RLCR    I   
Sbjct: 75 ARLCRLGMDIMAG 87


>gi|169828181|ref|YP_001698339.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
 gi|168992669|gb|ACA40209.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
          Length = 99

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          I  +    +  IA    IS     + ++ L + G V   R
Sbjct: 2  IQKEEEVTVRDIAGLLNISPNTASEHVKKLERHGWVSKER 41


>gi|149916874|ref|ZP_01905375.1| hypothetical protein PPSIR1_21539 [Plesiocystis pacifica SIR-1]
 gi|149822152|gb|EDM81543.1| hypothetical protein PPSIR1_21539 [Plesiocystis pacifica SIR-1]
          Length = 211

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M  T+R    +  +               +AE   +S   +++ L  L  A + V   RG
Sbjct: 1  MRRTER----LFAITELLRARRTGITAEALAERFEVSVRTIYRDLDSLRAAALPVIGERG 56

Query: 60 RRGGVRLCRP 69
          R GG+ L R 
Sbjct: 57 RGGGLALDRS 66


>gi|126736887|ref|ZP_01752622.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          SK209-2-6]
 gi|126721472|gb|EBA18175.1| transcriptional regulator, GntR family protein [Roseobacter sp.
          SK209-2-6]
          Length = 249

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
                  ++++    ++   + + L  + + G+V   RG   GV +     +  I   V
Sbjct: 36 QGSKLPSEAKLSARFGVNRHTVRRALAEMAEQGLVHARRGS--GVFVAARPTEYPIGKRV 93

Query: 80 K 80
          +
Sbjct: 94 R 94


>gi|91788193|ref|YP_549145.1| IclR family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697418|gb|ABE44247.1| transcriptional regulator, IclR family [Polaromonas sp. JS666]
          Length = 259

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          L+    + +    + +I+E   +      +IL  L     V+  R   G  RL     + 
Sbjct: 23 LLEILANREEAVSLKEISEKSGLHPSTAHRILNDLATGRFVD--RPSAGNYRLGMRLLE- 79

Query: 74 TILDVVKA 81
           + ++VKA
Sbjct: 80 -LGNLVKA 86


>gi|55821421|ref|YP_139863.1| GntR family transcriptional regulator [Streptococcus thermophilus
          LMG 18311]
 gi|55823346|ref|YP_141787.1| GntR family transcriptional regulator [Streptococcus thermophilus
          CNRZ1066]
 gi|55737406|gb|AAV61048.1| transcriptional regulator, GntR family, putative [Streptococcus
          thermophilus LMG 18311]
 gi|55739331|gb|AAV62972.1| transcriptional regulator, GntR family, putative [Streptococcus
          thermophilus CNRZ1066]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                + + A+   ++   + +  Q L K G+V + R
Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68


>gi|17549468|ref|NP_522808.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431721|emb|CAD18398.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 310

 Score = 33.8 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 1   MHLTKRTDYG---IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           M  +    Y     RV+         P+ +  +A    +S     +I + L    I  TV
Sbjct: 32  MKPSTERSYAQRIARVVEAIVADPGAPHTVESLAAVAHLSPYHFHRIYRALTGESIAATV 91

Query: 58  RGRRGGVRLCRPADQIT 74
           +      RL R A ++T
Sbjct: 92  QRV----RLARAAHRLT 104


>gi|321313054|ref|YP_004205341.1| GntR family transcriptional regulator [Bacillus subtilis BSn5]
 gi|320019328|gb|ADV94314.1| transcriptional regulator (GntR family) protein [Bacillus
          subtilis BSn5]
          Length = 243

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +  D P     + AE   IS + + + L  LV  G++  ++GR 
Sbjct: 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71


>gi|311107342|ref|YP_003980195.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
          A8]
 gi|310762031|gb|ADP17480.1| bacterial regulatory protein, GntR family protein 45
          [Achromobacter xylosoxidans A8]
          Length = 257

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           D     ++I+E   +S   + + L  L   G++   +G
Sbjct: 54 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 92


>gi|262171429|ref|ZP_06039107.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          mimicus MB-451]
 gi|261892505|gb|EEY38491.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio
          mimicus MB-451]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L  P D 
Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66

Query: 73 ITI 75
          ++ 
Sbjct: 67 LSF 69


>gi|260579591|ref|ZP_05847460.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602232|gb|EEW15540.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 461

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +  P     +AEA  +S   + + LQ +  AG+V   RG  
Sbjct: 407 SGRPMSTGDVAEALGLSAPPVRRALQAMRDAGLVH-WRGNG 446


>gi|239943419|ref|ZP_04695356.1| ArsR family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239989872|ref|ZP_04710536.1| ArsR family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
 gi|291446889|ref|ZP_06586279.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291349836|gb|EFE76740.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRP 69
           P R+  +A    IS   + K L+ L +AG+     RGR     L RP
Sbjct: 22 GPARVVDLAARHPISRPAVSKHLRVLTEAGLATVEDRGRERHYALARP 69


>gi|229528090|ref|ZP_04417481.1| 3-methyladenine DNA glycosylase [Vibrio cholerae 12129(1)]
 gi|229334452|gb|EEN99937.1| 3-methyladenine DNA glycosylase [Vibrio cholerae 12129(1)]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|167462325|ref|ZP_02327414.1| BirA [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381851|ref|ZP_08055805.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon
          repressor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154239|gb|EFX46561.1| biotin acetyl-CoA-carboxylase ligase and biotin regulon
          repressor-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 326

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPA 70
          R+L     +        Q++    +S   ++K +Q + + G   E  R +  G +L    
Sbjct: 4  RILAMFEQNPGEYLSGEQLSRELGVSRTAIWKHIQAMKQQGYRFEASRRK--GYKLLEEP 61

Query: 71 D 71
          +
Sbjct: 62 E 62


>gi|187922218|ref|YP_001893860.1| ArsR family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187713412|gb|ACD14636.1| transcriptional regulator, ArsR family [Burkholderia phytofirmans
          PsJN]
          Length = 110

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGR 60
          +   I R L+   +         +IA+   +S   L   L+ L  AG+V +  +GR
Sbjct: 17 SRLAIFRALV---VAGPEGMPAGEIAQQLGLSPSGLSFHLKDLSHAGLVNSEQKGR 69


>gi|254224704|ref|ZP_04918320.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae V51]
 gi|125622767|gb|EAZ51085.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae V51]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|148654762|ref|YP_001274967.1| CRP/FNR family transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566872|gb|ABQ89017.1| transcriptional regulator, Crp/Fnr family [Roseiflexus sp. RS-1]
          Length = 228

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 12  RVLMYCAIHNDYPNRI----------SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
             L+  A     P               +A+   +S   + ++L    + G+V++ RG
Sbjct: 151 HTLIRLADQYGAPTGAPGQVKIPLMQRDLADLIGVSHYTVNRLLHLWQQQGLVKSRRG 208


>gi|16330450|ref|NP_441178.1| hypothetical protein sll1961 [Synechocystis sp. PCC 6803]
 gi|1652940|dbj|BAA17858.1| sll1961 [Synechocystis sp. PCC 6803]
          Length = 388

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 20  HNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H  +      Q+A    +    + K+ Q L  AG+VE++ G  
Sbjct: 77  HPGHRLPSTRQLAMMTGLHRNTISKVYQNLEDAGLVESIAGSG 119


>gi|84386101|ref|ZP_00989130.1| transcriptional regulator, MarR family [Vibrio splendidus 12B01]
 gi|84378871|gb|EAP95725.1| transcriptional regulator, MarR family [Vibrio splendidus 12B01]
          Length = 160

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 2  HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           L+K  +YG+     +LM  AI       I +++    +S+     I+  L   G V+ V
Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNQTNVSQATTTTIIDRLELNGYVQRV 80

Query: 58 R 58
          R
Sbjct: 81 R 81


>gi|158314936|ref|YP_001507444.1| IclR family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158110341|gb|ABW12538.1| transcriptional regulator, IclR family [Frankia sp. EAN1pec]
          Length = 267

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          +L   A H   P   S ++    + +  +  +   +V   ++   R   GG +L 
Sbjct: 21 ILSLLAEHPKRPLGPSDLSRLTGVPKSTVLNLCAAMVDERLL---RRGSGGYQLG 72


>gi|19746208|ref|NP_607344.1| transcriptional regulator [Streptococcus pyogenes MGAS8232]
 gi|21910451|ref|NP_664719.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS315]
 gi|28896026|ref|NP_802376.1| GntR family transcriptional regulator [Streptococcus pyogenes
          SSI-1]
 gi|56807523|ref|ZP_00365453.1| COG1725: Predicted transcriptional regulators [Streptococcus
          pyogenes M49 591]
 gi|139473653|ref|YP_001128369.1| GntR family transcriptional regulator [Streptococcus pyogenes
          str. Manfredo]
 gi|209559543|ref|YP_002286015.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          NZ131]
 gi|19748391|gb|AAL97843.1| putative transcriptional regulator [Streptococcus pyogenes
          MGAS8232]
 gi|21904650|gb|AAM79522.1| putative transcriptional regulator (GntR family) [Streptococcus
          pyogenes MGAS315]
 gi|28811276|dbj|BAC64209.1| putative transcriptional regulator (GntR family) [Streptococcus
          pyogenes SSI-1]
 gi|134271900|emb|CAM30138.1| GntR family regulatory protein [Streptococcus pyogenes str.
          Manfredo]
 gi|209540744|gb|ACI61320.1| Transcriptional regulator, GntR family [Streptococcus pyogenes
          NZ131]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68


>gi|323484313|ref|ZP_08089680.1| GntR family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323694687|ref|ZP_08108849.1| GntR family Transcriptional regulator [Clostridium symbiosum
          WAL-14673]
 gi|323402307|gb|EGA94638.1| GntR family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323501279|gb|EGB17179.1| GntR family Transcriptional regulator [Clostridium symbiosum
          WAL-14673]
          Length = 178

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           N     +  +A    I+   + +    L + G + +V+GR 
Sbjct: 31 QNSQLPSVRSLATELSINPNTIQRAYAELERQGYIYSVKGRG 72


>gi|323135783|ref|ZP_08070866.1| regulatory protein ArsR [Methylocystis sp. ATCC 49242]
 gi|322398874|gb|EFY01393.1| regulatory protein ArsR [Methylocystis sp. ATCC 49242]
          Length = 126

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C +H      ++++ EA  +S+  L + L  L    +V+T R
Sbjct: 27 RLMVLCELHKGE-QSVTKLQEAIGLSQSSLSQHLARLRADDLVKTRR 72


>gi|315426227|dbj|BAJ47870.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum
          subterraneum]
 gi|315427892|dbj|BAJ49484.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum
          subterraneum]
          Length = 195

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILDV 78
          D P R + +A++  IS+  L   L  L+K  +V    +      G  L     +I   ++
Sbjct: 34 DGPRRFADLAKSLGISQKVLAHKLSNLMKHQLVSMDVS------GYILTEKGREI--GEL 85

Query: 79 VK 80
          VK
Sbjct: 86 VK 87


>gi|256393993|ref|YP_003115557.1| hypothetical protein Caci_4855 [Catenulispora acidiphila DSM
          44928]
 gi|256360219|gb|ACU73716.1| hypothetical protein Caci_4855 [Catenulispora acidiphila DSM
          44928]
          Length = 117

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           VL+  A +     R  ++AEA  I+E     I+  LV AG V   R
Sbjct: 18 HVLVEIARNPQALVR--ELAEASGITERAAAAIVSDLVDAGYVSRER 62


>gi|251782508|ref|YP_002996810.1| GntR family transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
 gi|242391137|dbj|BAH81596.1| transcriptional regulator, GntR family [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|323127394|gb|ADX24691.1| Transcriptional regulator, GntR family protein [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68


>gi|240142059|ref|YP_002966569.1| transcriptional regulator, ArsR family [Methylobacterium
          extorquens AM1]
 gi|240012003|gb|ACS43228.1| transcriptional regulator, ArsR family [Methylobacterium
          extorquens AM1]
          Length = 120

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R++               +AEA  +S   L   L+ L  AG++ + R
Sbjct: 20 LRIVRQLVTAGPEGMAAGMLAEAVGVSGTNLSFHLKELSHAGLITSRR 67


>gi|240141731|ref|YP_002966211.1| putative regulatory protein, Crp (cAMP receptor protein)
           [Methylobacterium extorquens AM1]
 gi|240011708|gb|ACS42934.1| putative regulatory protein, Crp (cAMP receptor protein)
           [Methylobacterium extorquens AM1]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P   + +A+   +S + + ++LQ L + G++E
Sbjct: 180 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 211


>gi|237731667|ref|ZP_04562148.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226907206|gb|EEH93124.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 256

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 8   DYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
           DY       + L++  +  +     S++A    +SE  + + L  L K G+ + V    G
Sbjct: 3   DYAAFPEQRQALIFQILQENGRVICSELANRLGVSEHTIRRDLHELSKDGVCKKV---YG 59

Query: 63  GVRLCRP-ADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKAL 115
           G  +  P ++ I +   +   ++S     C        C  + +      + +AL
Sbjct: 60  GAVITLPESEDIDVRKSINVAKKSNIAQRCARLVKSGSCIFIDTGSTNLAMAEAL 114


>gi|217969520|ref|YP_002354754.1| transcriptional regulator, IclR family [Thauera sp. MZ1T]
 gi|217506847|gb|ACK53858.1| transcriptional regulator, IclR family [Thauera sp. MZ1T]
          Length = 266

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          +++L   A H D P ++ Q+A    +      +IL  +  +G VE  R   G  RL    
Sbjct: 25 MKLLDVLAEHAD-PVQLKQLAIETGLHPSTAHRILGAMTHSGFVE--RSEAGAYRLG--- 78

Query: 71 DQITILDV 78
            I +L++
Sbjct: 79 --IRLLEL 84


>gi|221215723|ref|ZP_03588684.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD1]
 gi|221164425|gb|EED96910.1| transcriptional regulator, ArsR family [Burkholderia multivorans
          CGD1]
          Length = 116

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 7  TDYGI-RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +   I R L+    +        +IA+   +S   L   L+ L  AG+V++ +
Sbjct: 20 SRLAIFRALVVAGPNG---LAAGEIAQRLGLSPSGLSFHLKDLSHAGLVQSRQ 69


>gi|297197899|ref|ZP_06915296.1| metal-dependent regulatory protein [Streptomyces sviceus ATCC
          29083]
 gi|197717158|gb|EDY61192.1| metal-dependent regulatory protein [Streptomyces sviceus ATCC
          29083]
          Length = 132

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
          IRVL         P  +  +     I    L + L  L ++GIV + R G      L 
Sbjct: 22 IRVLELL---QHGPVPVRDLLADIDIEPSSLSQQLAVLRRSGIVVSTREGSTVSYALA 76


>gi|297618783|ref|YP_003706888.1| phosphate uptake regulator PhoU [Methanococcus voltae A3]
 gi|297377760|gb|ADI35915.1| phosphate uptake regulator, PhoU [Methanococcus voltae A3]
          Length = 282

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +D P    +IAE   +S  ++ K+L+PL+   +V+
Sbjct: 18 DDEPETQDEIAEKLDVSRRYVAKLLKPLIDDKVVK 52


>gi|281356861|ref|ZP_06243351.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC
          BAA-548]
 gi|281316419|gb|EFB00443.1| transcriptional regulator, GntR family [Victivallis vadensis ATCC
          BAA-548]
          Length = 344

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--ADQITI 75
             D  +  +  A    ++ +   K   PL +AG ++  RG  G   L  P   +QI +
Sbjct: 24 APGDRFHSENDAARRFGVTAVTARKAFAPLEQAGYIDRKRG-SGTFVLRLPDRPEQIRL 81


>gi|229543039|ref|ZP_04432099.1| transcriptional regulator, MarR family [Bacillus coagulans 36D1]
 gi|229327459|gb|EEN93134.1| transcriptional regulator, MarR family [Bacillus coagulans 36D1]
          Length = 199

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
          +TD     L   A   +      +I+E   I    + +I++ L +AG
Sbjct: 28 KTDNAFETLKLLAAEEN--VTAGRISEVLDIKPSSVTQIIKKLEEAG 72


>gi|66045573|ref|YP_235414.1| regulatory proteins, IclR [Pseudomonas syringae pv. syringae
          B728a]
 gi|63256280|gb|AAY37376.1| regulatory proteins, IclR [Pseudomonas syringae pv. syringae
          B728a]
          Length = 279

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 20/82 (24%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66
          +R L  C   ++   R++Q+A+   +S+    ++L+ L++ G+VE    + R      RL
Sbjct: 26 LRCLGDC---DEGGERVTQLAQRVGLSQPTTHRLLRSLMEEGMVEQDLLSKR-----YRL 77

Query: 67 --------CRPADQITILDVVK 80
                   +  +   + DVV+
Sbjct: 78 SIEFFALAAKAGNTGNLRDVVR 99


>gi|21222109|ref|NP_627888.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|256786804|ref|ZP_05525235.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289770694|ref|ZP_06530072.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|5019346|emb|CAB44399.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
 gi|289700893|gb|EFD68322.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 122

 Score = 33.8 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 52 LRLFSSVASHEGGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 98


>gi|330467425|ref|YP_004405168.1| ArsR family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810396|gb|AEB44568.1| ArsR family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 117

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
          +R+L       +    +S + E   +S+  +   L+ L +AG++E   RG     RL   
Sbjct: 37 LRLLSLIQSAPEQEASVSDLTEPLGLSQPTVSHHLRILTEAGLLERDKRGVWAYYRLVPS 96

Query: 70 A 70
          A
Sbjct: 97 A 97


>gi|331696853|ref|YP_004333092.1| iron (metal) dependent repressor, DtxR family [Pseudonocardia
          dioxanivorans CB1190]
 gi|326951542|gb|AEA25239.1| iron (metal) dependent repressor, DtxR family [Pseudonocardia
          dioxanivorans CB1190]
          Length = 220

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M  +  T+  ++VL      +D P  +S +A    ++   + ++++ L   G+V   R  
Sbjct: 1  MTESAATENYLKVLWTAGEWSDAPVTVSVLASRLGLAPSSVSEVVRRLTDRGLVAHAR-- 58

Query: 61 RGGVRLCRPADQITILDV 78
           G + L     +I +  V
Sbjct: 59 YGTIELTPDGRRIALGTV 76


>gi|329113298|ref|ZP_08242080.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001]
 gi|326697376|gb|EGE49035.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001]
          Length = 189

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 28  SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR---LCRPADQITILDV-VKATE 83
            +IAEA  I    + +I++ LVK G + + R +  G+R   L R      + +V  +AT+
Sbjct: 109 EEIAEAVGIKADHVSEIMRELVKFGAIFSEREKVAGMRGPGLVRYYMNRHVAEVGSRATQ 168

Query: 84  ESFFVAE 90
           E   +  
Sbjct: 169 EELALIP 175


>gi|299537603|ref|ZP_07050896.1| YobV [Lysinibacillus fusiformis ZC1]
 gi|298726972|gb|EFI67554.1| YobV [Lysinibacillus fusiformis ZC1]
          Length = 308

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M L +     +  +    I+     +  ++AE   +S   +++ ++ L  AG+ V + +G
Sbjct: 1  MKLER-----LLTMTMILINR-KKVKAQELAELFNVSIRTIYRDIETLSCAGVPVISQQG 54

Query: 60 RRGGVRL 66
            GG+ L
Sbjct: 55 VNGGISL 61


>gi|297197742|ref|ZP_06915139.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|297146850|gb|EDY60265.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 268

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +  +      ++     +S   + + +  L   G+VE  RGR GG
Sbjct: 54 LPGERLPAERELTALLHVSRPTVREAVARLQALGVVEIRRGRNGG 98


>gi|283835600|ref|ZP_06355341.1| transcriptional regulator, ArsR family [Citrobacter youngae ATCC
          29220]
 gi|291068812|gb|EFE06921.1| transcriptional regulator, ArsR family [Citrobacter youngae ATCC
          29220]
          Length = 99

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+L+ C +         ++A A  +S     + L  + + G++++ R
Sbjct: 26 RLLILCMLCGSPGTSAGELARATGLSPSATSQHLARMREEGLIDSQR 72


>gi|269138393|ref|YP_003295093.1| DNA-binding transcriptional repressor [Edwardsiella tarda EIB202]
 gi|267984053|gb|ACY83882.1| DNA-binding transcriptional repressor [Edwardsiella tarda EIB202]
 gi|304558420|gb|ADM41084.1| Uxu operon transcriptional regulator [Edwardsiella tarda FL6-60]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
             +       IAE   ++   + + L  L   G+VE  RG  G   L  PA   ++L
Sbjct: 29 RPGERLPPERDIAERLGVTRTVVREALIMLEINGLVEVRRGA-GIFVLEAPAQAESVL 85


>gi|262281394|ref|ZP_06059175.1| L-lactate utilization transcriptional repressor [Acinetobacter
          calcoaceticus RUH2202]
 gi|262257220|gb|EEY75957.1| L-lactate utilization transcriptional repressor [Acinetobacter
          calcoaceticus RUH2202]
          Length = 250

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 1  MHLTKRTDYGIRVLM---YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
          M ++ +    ++ L+   +     D      Q+A +  +S   L + +Q L   G++ + 
Sbjct: 1  MRISDQVVMKLQALIEERHM-RKGDRLPAERQLATSLGVSRPSLREAIQQLNSQGVLISR 59

Query: 58 RG 59
          RG
Sbjct: 60 RG 61


>gi|229514422|ref|ZP_04403883.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TMA 21]
 gi|229348402|gb|EEO13360.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TMA 21]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|284029663|ref|YP_003379594.1| GntR family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808956|gb|ADB30795.1| transcriptional regulator, GntR family [Kribbella flavida DSM
          17836]
          Length = 247

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +AEA  +S   + + +  LV  G++   RG  
Sbjct: 44 DLAEAYGLSRPTVRQAIARLVDQGLLVRKRGVG 76


>gi|262201865|ref|YP_003273073.1| ArsR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262085212|gb|ACY21180.1| regulatory protein ArsR [Gordonia bronchialis DSM 43247]
          Length = 99

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRL 66
          + +L+           +  IA     +E  + + L+ L   G V + R GR    RL
Sbjct: 29 LEILIVLHRRPG--IIVGDIAATVGRTETAVSQALRVLRHQGWVTSTRVGRSVSYRL 83


>gi|153212155|ref|ZP_01947950.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 1587]
 gi|124116707|gb|EAY35527.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 1587]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|157151495|ref|YP_001451205.1| repressor protein adcR [Streptococcus gordonii str. Challis
          substr. CH1]
 gi|30059135|gb|AAO43167.1| putative transcriptional repressor [Streptococcus gordonii str.
          Challis]
 gi|157076289|gb|ABV10972.1| repressor protein adcR [Streptococcus gordonii str. Challis
          substr. CH1]
          Length = 147

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A   +     S +A+   +S+  + K ++ L+  G++ET +
Sbjct: 42 HILMLLA---EEMLTNSDLAKKLNVSQAAVTKAVKSLINQGMLETFK 85


>gi|15675238|ref|NP_269412.1| GntR family transcriptional regulator [Streptococcus pyogenes M1
          GAS]
 gi|71910804|ref|YP_282354.1| GntR family transcriptional regulator [Streptococcus pyogenes
          MGAS5005]
 gi|13622408|gb|AAK34133.1| putative transcriptional regulator (GntR family) [Streptococcus
          pyogenes M1 GAS]
 gi|71853586|gb|AAZ51609.1| transcriptional regulator, GntR family [Streptococcus pyogenes
          MGAS5005]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 12 RVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           V+M          D    + + AE   ++   + +    L + G+V + R
Sbjct: 18 HVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQR 68


>gi|90422669|ref|YP_531039.1| GntR-like [Rhodopseudomonas palustris BisB18]
 gi|90104683|gb|ABD86720.1| transcriptional regulator, GntR family [Rhodopseudomonas
          palustris BisB18]
          Length = 252

 Score = 33.8 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
          ++AE   +S   + + L+ L +  ++ + RG  G   + RP
Sbjct: 50 ELAETYLVSRPIVREALRQLREQRLIYSRRGA-GSFVVARP 89


>gi|330968218|gb|EGH68478.1| IclR family transcriptional regulator [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 279

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 17/80 (21%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL-- 66
          VL      ++   R++Q+A+   +S+    ++L+ L+  G+VE    + R      RL  
Sbjct: 25 VLRCLGECDEGGERVTQLAQRVGLSQPTTHRLLRSLMDEGMVEQDLLSKR-----YRLSI 79

Query: 67 ------CRPADQITILDVVK 80
                 R  +   + DVV+
Sbjct: 80 EFFALAARAGNTGNLRDVVR 99


>gi|326382378|ref|ZP_08204070.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
 gi|326199108|gb|EGD56290.1| ArsR family transcriptional regulator [Gordonia neofelifaecis
          NRRL B-59395]
          Length = 109

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A H+     +  I+ A  +S+  +   L+ L  AG++E+ R
Sbjct: 38 IASHDGGQACVCDISPAVDVSQPTVSHHLKVLRTAGLLESER 79


>gi|317407663|gb|EFV87600.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 237

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
           D     ++I+E   +S   + + L  L   G++   +G
Sbjct: 34 GDKLPSENEISERFGVSRPVVREALLRLRADGLITAHQG 72


>gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300076670|gb|ADJ66069.1| GntR family transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 240

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
              +   P  + ++A+    S   + + L  L   GIV + RG  
Sbjct: 35 ELGENRKLPTEV-ELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79


>gi|326775637|ref|ZP_08234902.1| transcriptional regulator, GntR family with UTRA sensor domain
          [Streptomyces cf. griseus XylebKG-1]
 gi|326655970|gb|EGE40816.1| transcriptional regulator, GntR family with UTRA sensor domain
          [Streptomyces cf. griseus XylebKG-1]
          Length = 257

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A   D  +  +++ +   ++   + K +  L   G++ + +G+ 
Sbjct: 26 DLA-PGDQLSSENELKDRFGVTRTTVRKGIALLRAEGLITSKQGKG 70


>gi|296268115|ref|YP_003650747.1| MarR family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296090902|gb|ADG86854.1| transcriptional regulator, MarR family [Thermobispora bispora DSM
          43833]
          Length = 169

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          L+  A   +   R+S +A    +S   + +++  L + G+VE
Sbjct: 53 LIRLARSPERRLRMSDLAAQTSMSTSGITRVVDRLEREGLVE 94


>gi|291303171|ref|YP_003514449.1| MarR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572391|gb|ADD45356.1| transcriptional regulator, MarR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 333

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVR 65
           R+L+      + P   S+IA    ++   + + L+ L   G+V    +GR+   R
Sbjct: 268 RILLLL----EEPLATSEIARRLDVTPSAVSQQLRVLHDNGLVARARQGRQVLYR 318


>gi|262191924|ref|ZP_06050092.1| 3-methyladenine DNA glycosylase [Vibrio cholerae CT 5369-93]
 gi|262032224|gb|EEY50794.1| 3-methyladenine DNA glycosylase [Vibrio cholerae CT 5369-93]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|240103860|ref|YP_002960169.1| Bifunctional biotin operon repressor/biotin--[acetyl CoA
          carboxylase] (birA) [Thermococcus gammatolerans EJ3]
 gi|239911414|gb|ACS34305.1| Bifunctional biotin operon repressor/biotin--[acetyl CoA
          carboxylase] (birA) [Thermococcus gammatolerans EJ3]
          Length = 244

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           P   +++A    IS + ++K ++ L   G   ++R    G  L + A 
Sbjct: 25 GPASGTELARKLGISRVAVWKHIKELNSLGY--SIRATGKGYCLEKEAK 71


>gi|262201664|ref|YP_003272872.1| MarR family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262085011|gb|ACY20979.1| regulatory protein MarR [Gordonia bronchialis DSM 43247]
          Length = 142

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL       D+  R+S +A A  +S+  L +++  L K G+V+
Sbjct: 46 VLELLWDAEDHKLRMSDLAGAVHLSQSALSRVVARLEKDGLVQ 88


>gi|212703447|ref|ZP_03311575.1| hypothetical protein DESPIG_01491 [Desulfovibrio piger ATCC
          29098]
 gi|212673133|gb|EEB33616.1| hypothetical protein DESPIG_01491 [Desulfovibrio piger ATCC
          29098]
          Length = 223

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET--VRGRRGGVRLCRPADQI----T 74
               +   +AE   IS   + + L+ LV+ G+V +   +G+R  VRL    ++I    +
Sbjct: 27 PGQAIKEVALAEHLGISRAPVREALESLVQEGLVTSEPQKGKR--VRL-MSPEEIRNSYS 83

Query: 75 ILDVVKAT 82
          +  +++AT
Sbjct: 84 VGGILEAT 91


>gi|86144738|ref|ZP_01063070.1| transcriptional regulator, MarR family protein [Vibrio sp.
          MED222]
 gi|218675846|ref|YP_002394665.1| Transcriptional regulator, MarR family [Vibrio splendidus LGP32]
 gi|85837637|gb|EAQ55749.1| transcriptional regulator, MarR family protein [Vibrio sp.
          MED222]
 gi|218324114|emb|CAV25286.1| Transcriptional regulator, MarR family [Vibrio splendidus LGP32]
          Length = 160

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 2  HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           L+K  +YG+     +LM  AI       I +++    +S+     I+  L   G V+ V
Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNQTNVSQATTTTIIDRLELNGYVQRV 80

Query: 58 R 58
          R
Sbjct: 81 R 81


>gi|332528791|ref|ZP_08404768.1| regulatory protein, ArsR [Hylemonella gracilis ATCC 19624]
 gi|332041857|gb|EGI78206.1| regulatory protein, ArsR [Hylemonella gracilis ATCC 19624]
          Length = 119

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
          LM           +S++AEAC  S   + + L  L K G+VE   RG     R+  P
Sbjct: 32 LMILNQLRGGEANVSELAEACACSVANVSRHLTLLSKHGLVERDSRGANAYYRIADP 88


>gi|322391696|ref|ZP_08065163.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus peroris ATCC 700780]
 gi|321145406|gb|EFX40800.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus peroris ATCC 700780]
          Length = 262

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|304403789|ref|ZP_07385451.1| two component transcriptional regulator, AraC family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346767|gb|EFM12599.1| two component transcriptional regulator, AraC family [Paenibacillus
           curdlanolyticus YK9]
          Length = 514

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 16  YCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           Y A H+     +  IA+   +S  ++ K+ + 
Sbjct: 417 YIAEHSQEEISLETIAKRVQLSPHYISKMFKE 448


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 13  VLMYCAIHNDYPNRISQIAEAC---------CISELFLFKILQPLVKAGIVETVRGRRGG 63
           VL +  +        S+I E            I E+++  + + L +AG++ TVRG   G
Sbjct: 156 VLEHLVLRAGEVVSKSEILEHVWDFAYEGDPNIVEVYVSTLRRKL-RAGLIRTVRGA--G 212

Query: 64  VRLCRPA 70
            RL    
Sbjct: 213 YRLEASP 219


>gi|326774475|ref|ZP_08233740.1| transcriptional regulator, GntR family with UTRA sensor domain
          [Streptomyces cf. griseus XylebKG-1]
 gi|326654808|gb|EGE39654.1| transcriptional regulator, GntR family with UTRA sensor domain
          [Streptomyces cf. griseus XylebKG-1]
          Length = 252

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   L + L  L++ G++  VRGR 
Sbjct: 47 ELAQEFGVSRGTLRRALTTLIEEGLLRQVRGRG 79


>gi|296138520|ref|YP_003645763.1| ArsR family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296026654|gb|ADG77424.1| transcriptional regulator, ArsR family [Tsukamurella
          paurometabola DSM 20162]
          Length = 124

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          A   D    +++IAE   +S   + K L  L  A ++   R  +      RPA
Sbjct: 26 ARLADGDATLTEIAEHYDVSIQAVSKHLTVLENARLISRTRRAQ-----ARPA 73


>gi|269955250|ref|YP_003325039.1| MarR family transcriptional regulator [Xylanimonas
          cellulosilytica DSM 15894]
 gi|269303931|gb|ACZ29481.1| transcriptional regulator, MarR family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 172

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           +Y   +++  +   +   R+S++AE   +S   L   +  + + G+VE
Sbjct: 42 GEY--HLMVQLSEAPERTLRMSELAEYLALSRSRLTHTVDRMERRGLVE 88


>gi|254390154|ref|ZP_05005374.1| ArsR2 [Streptomyces clavuligerus ATCC 27064]
 gi|294817144|ref|ZP_06775786.1| Putative transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326445964|ref|ZP_08220698.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197703861|gb|EDY49673.1| ArsR2 [Streptomyces clavuligerus ATCC 27064]
 gi|294321959|gb|EFG04094.1| Putative transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 51 LRLFSAVASHESGEACVCDISD-VGVSQPTVSHHLKKLKEAGLLTSER 97


>gi|220921463|ref|YP_002496764.1| GntR domain-containing protein [Methylobacterium nodulans ORS
          2060]
 gi|219946069|gb|ACL56461.1| GntR domain protein [Methylobacterium nodulans ORS 2060]
          Length = 250

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          A +   P   +++A    +S   +   L+ L +  ++ + +G  G   L R
Sbjct: 42 AENQKLP-SENELAARFQVSRPVVRAALERLRRENVIVSRQGA-GSFVLAR 90


>gi|126740295|ref|ZP_01755984.1| putative transcriptional regulator [Roseobacter sp. SK209-2-6]
 gi|126718750|gb|EBA15463.1| putative transcriptional regulator [Roseobacter sp. SK209-2-6]
          Length = 102

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          + +LM             Q+A+   +S   + + +  L  AG+ V    GR GG +L
Sbjct: 7  LSILMRL--QTRGQKTAEQLAQELEVSLRTIHRDIDQLSYAGVPVNAEPGRNGGYKL 61


>gi|119716444|ref|YP_923409.1| ArsR family transcriptional regulator [Nocardioides sp. JS614]
 gi|119537105|gb|ABL81722.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614]
          Length = 111

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRR-----GGVR 65
           R+LM+  +   YP   +++A+   ++   +   L  L   G+V  V  GRR        R
Sbjct: 26  RILMHLRVAPAYP---AELADDLGVTRQSMSNHLGCLRGCGLVVAVPEGRRTRYELADAR 82

Query: 66  LCRPADQITILDVVKATEESFFVAECFASHKIDC 99
           L        + D++  T+       C  + + +C
Sbjct: 83  LAHALAD--LHDIILVTDPD----ACTETEEQEC 110


>gi|119389993|pdb|2HYF|A Chain A, The Structure Of Apo-Mntr From Bacillus Subtilis,
          Selenomethionine Derivative
 gi|119389994|pdb|2HYF|B Chain B, The Structure Of Apo-Mntr From Bacillus Subtilis,
          Selenomethionine Derivative
 gi|119389995|pdb|2HYF|C Chain C, The Structure Of Apo-Mntr From Bacillus Subtilis,
          Selenomethionine Derivative
 gi|119389996|pdb|2HYF|D Chain D, The Structure Of Apo-Mntr From Bacillus Subtilis,
          Selenomethionine Derivative
          Length = 142

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA---------GIVETVRGRRGGVR 65
          +Y  I      R+S IAEA  +    + K +Q L K          G+V T +G++ G R
Sbjct: 13 IYXLIEEKGYARVSDIAEALAVHPSSVTKXVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72

Query: 66 L 66
          L
Sbjct: 73 L 73


>gi|116248832|ref|YP_764673.1| DeoR family transcriptional regulator [Rhizobium leguminosarum
          bv. viciae 3841]
 gi|115253482|emb|CAK11873.1| putative deoR family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 254

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           +L   A H      + ++A    +S   + + L+ L   G +  + G  GGV   R AD
Sbjct: 11 HILEELAKHG--RVTVKELAAEFSVSPETVRRDLKQLEMEGHLRCIYG--GGVTPRRDAD 66

Query: 72 Q 72
          Q
Sbjct: 67 Q 67


>gi|114799323|ref|YP_761088.1| putative histidine utilization repressor [Hyphomonas neptunium
          ATCC 15444]
 gi|114739497|gb|ABI77622.1| putative histidine utilization repressor [Hyphomonas neptunium
          ATCC 15444]
          Length = 240

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 19 IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
          +  D    +  ++ E    S + + K +  L   G++  VR +R G  +  P    TILD
Sbjct: 27 LKPDDRIPLERELMEIYDCSRMTVNKAVSDLASRGLI--VRRKRAGSFVAHPPSDSTILD 84

Query: 78 V 78
          V
Sbjct: 85 V 85


>gi|56696318|ref|YP_166675.1| AraC family transcriptional regulator [Ruegeria pomeroyi DSS-3]
 gi|56678055|gb|AAV94721.1| transcriptional regulator, AraC family [Ruegeria pomeroyi DSS-3]
          Length = 329

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 2   HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
            LT R +     LM  A+  D P  +++IAE    S   L +  +
Sbjct: 221 KLTARAN----ALMEAAL--DEPLSLAEIAETLGTSPRTLQQQFR 259


>gi|85704207|ref|ZP_01035310.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          217]
 gi|85671527|gb|EAQ26385.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          217]
          Length = 244

 Score = 33.8 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++     +++A+   +S   + + L+ L    ++ T RG  GG
Sbjct: 31 DERLPSEAELADHFAVSRPTVREALKRLAAQSLIRTQRGAFGG 73


>gi|328951390|ref|YP_004368725.1| biotin/acetyl-CoA-carboxylase ligase [Marinithermus
          hydrothermalis DSM 14884]
 gi|328451714|gb|AEB12615.1| biotin/acetyl-CoA-carboxylase ligase [Marinithermus
          hydrothermalis DSM 14884]
          Length = 309

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLC 67
          ++       +A    +S + ++K  Q L +AG  +E  RGR  G RL 
Sbjct: 13 SETYQSGEALARRLGVSRVAVWKQAQALREAGYPIEVARGR--GYRLA 58


>gi|327485986|gb|AEA80392.1| ADA regulatory protein [Vibrio cholerae LMA3894-4]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|328542746|ref|YP_004302855.1| GntR family transcription regulator protein [polymorphum gilvum
          SL003B-26A1]
 gi|326412492|gb|ADZ69555.1| GntR family transcription regulator protein [Polymorphum gilvum
          SL003B-26A1]
          Length = 258

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +A+   +S   L + L  L + G++ +VRG  
Sbjct: 56 LAQEFDVSRPVLREALDKLREEGLIYSVRGSG 87


>gi|315426152|dbj|BAJ47796.1| transcriptional regulator, HxlR family [Candidatus Caldiarchaeum
          subterraneum]
          Length = 195

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRLCRPADQITILDV 78
          D P R + +A++  IS+  L   L  L+K  +V    +      G  L     +I   ++
Sbjct: 34 DGPRRFADLAKSLGISQKVLAHKLSNLMKHQLVSMDVS------GYILTEKGREI--GEL 85

Query: 79 VK 80
          VK
Sbjct: 86 VK 87


>gi|312863471|ref|ZP_07723709.1| transcriptional regulator, GntR family [Streptococcus
          vestibularis F0396]
 gi|311101007|gb|EFQ59212.1| transcriptional regulator, GntR family [Streptococcus
          vestibularis F0396]
          Length = 125

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                + + A+   ++   + +  Q L K G+V + R
Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68


>gi|302524918|ref|ZP_07277260.1| predicted protein [Streptomyces sp. AA4]
 gi|302433813|gb|EFL05629.1| predicted protein [Streptomyces sp. AA4]
          Length = 153

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           LM  A   D   R+ ++A+A  +++    +++  L + G+ E
Sbjct: 54 ALMSLADRPDGELRMQELADATSLNQSSATRLVGRLERTGLTE 96


>gi|298246854|ref|ZP_06970659.1| transcriptional regulator, AraC family [Ktedonobacter racemifer DSM
           44963]
 gi|297549513|gb|EFH83379.1| transcriptional regulator, AraC family [Ktedonobacter racemifer DSM
           44963]
          Length = 264

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 8   DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
               RV+ Y   H +       IAE    S   L ++ + 
Sbjct: 159 RLAYRVMDYLREHIEQDVNSELIAEELGYSYGHLDRVFRQ 198


>gi|289643080|ref|ZP_06475211.1| transcriptional regulator, HxlR family [Frankia symbiont of
          Datisca glomerata]
 gi|289507124|gb|EFD28092.1| transcriptional regulator, HxlR family [Frankia symbiont of
          Datisca glomerata]
          Length = 123

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
            L    I  D P     +A     +E  L + L+ L +AGI+E      G  RL 
Sbjct: 29 HALPVFWILRDGPTAFRSLAARLDATESHLSQRLRELREAGIIEVDE--AGDYRLS 82


>gi|260871082|ref|YP_003237484.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O111:H- str. 11128]
 gi|257767438|dbj|BAI38933.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O111:H- str. 11128]
 gi|323176261|gb|EFZ61853.1| FCD domain protein [Escherichia coli 1180]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|271961791|ref|YP_003335987.1| hypothetical protein Sros_0194 [Streptosporangium roseum DSM
          43021]
 gi|270504966|gb|ACZ83244.1| hypothetical protein Sros_0194 [Streptosporangium roseum DSM
          43021]
          Length = 161

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 1  MHLTKRTDYGI-----RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          MHL+  T  G+       L+  A       R+S +A    +S   + +++  L + G+V
Sbjct: 28 MHLS-FTAVGLSDIDFETLIRLARSPGQRLRMSDLAAQTSLSTSGVTRVVDRLEREGLV 85


>gi|254037369|ref|ZP_04871446.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300946739|ref|ZP_07160988.1| FCD domain protein [Escherichia coli MS 116-1]
 gi|300959127|ref|ZP_07171213.1| FCD domain protein [Escherichia coli MS 175-1]
 gi|226840475|gb|EEH72477.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300314275|gb|EFJ64059.1| FCD domain protein [Escherichia coli MS 175-1]
 gi|300453595|gb|EFK17215.1| FCD domain protein [Escherichia coli MS 116-1]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|225027886|ref|ZP_03717078.1| hypothetical protein EUBHAL_02146 [Eubacterium hallii DSM 3353]
 gi|224954833|gb|EEG36042.1| hypothetical protein EUBHAL_02146 [Eubacterium hallii DSM 3353]
          Length = 145

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          +   ++S I+E   +    + K ++ + K G VE
Sbjct: 48 EGKVKVSDISENLGLPRPSVTKTVKDMEKLGFVE 81


>gi|212695696|ref|ZP_03303824.1| hypothetical protein ANHYDRO_00214 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677369|gb|EEB36976.1| hypothetical protein ANHYDRO_00214 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 97

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLC 67
          +R++         P  + +IAE   +S+  +   L+ L    +V + R GR     L 
Sbjct: 26 LRIMNVL---FSGPTSVGEIAEVLDMSQSAISHQLKSLKDNNLVSSKRSGRSVYYELA 80


>gi|153802511|ref|ZP_01957097.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae MZO-3]
 gi|124121928|gb|EAY40671.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae MZO-3]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|33591907|ref|NP_879551.1| transcriptional regulator [Bordetella pertussis Tohama I]
 gi|33571551|emb|CAE41034.1| probable transcriptional regulator [Bordetella pertussis Tohama
          I]
 gi|332381324|gb|AEE66171.1| transcriptional regulator [Bordetella pertussis CS]
          Length = 271

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 10 GIRVLMYC-AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
            R L    A H    P  + +IAEA  +      +IL  L   G VE   G RG
Sbjct: 29 AARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRG 83


>gi|10956686|ref|NP_044288.1| hypothetical protein pSCL_p4 [Streptomyces clavuligerus ATCC
          27064]
 gi|254393830|ref|ZP_05008941.1| KORA protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444868|ref|ZP_08219602.1| hypothetical protein SclaA2_27555 [Streptomyces clavuligerus ATCC
          27064]
 gi|48762|emb|CAA38043.1| unnamed protein product [Streptomyces clavuligerus ATCC 27064]
 gi|197707428|gb|EDY53240.1| KORA protein [Streptomyces clavuligerus ATCC 27064]
          Length = 248

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            IA+   IS     K++  L   G+VE V+G  
Sbjct: 37 RNIAQEWGISRATAQKVITALKAQGLVEAVQGSG 70


>gi|114566313|ref|YP_753467.1| transcriptional repressor of the biotin operon / biotin
          acetyl-CoA-carboxylase synthetase; RBL03563
          [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337248|gb|ABI68096.1| transcriptional repressor of the biotin operon / biotin
          acetyl-CoA-carboxylase synthetase; RBL03563
          [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 325

 Score = 33.8 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GV 64
          R+L              ++AE   IS + ++K ++ L   G    + G  G G 
Sbjct: 4  RILGELCQSPGAYVSGKELAEKLGISRVAVWKHIENLKGEGY--AILGVSGKGY 55


>gi|332522722|ref|ZP_08398974.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313986|gb|EGJ26971.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|323357098|ref|YP_004223494.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273469|dbj|BAJ73614.1| transcriptional regulator [Microbacterium testaceum StLB037]
          Length = 234

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          GIR+L   A     P  I  +A    +     +++L+ L   G+V   R   G VRL 
Sbjct: 17 GIRLLEELADAR-TPLSIDDLAARVELHRSVAYRLLRTLEDHGLVT--RDAAGAVRLG 71


>gi|315222677|ref|ZP_07864566.1| transcriptional regulator, GntR family [Streptococcus anginosus
          F0211]
 gi|315188363|gb|EFU22089.1| transcriptional regulator, GntR family [Streptococcus anginosus
          F0211]
          Length = 121

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
             +    + ++A    ++   + + L  L K G V + R
Sbjct: 29 QAGEKLPAVRELAAEAGVNPNTIQRALSDLEKEGFVYSQR 68


>gi|298249530|ref|ZP_06973334.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297547534|gb|EFH81401.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 326

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              ++A    +SE  + + ++ L  AGI V   RG  GG  L
Sbjct: 19 LTSRELARRLEVSERTIHRDMEALGVAGIPVVAERGNGGGWGL 61


>gi|326792516|ref|YP_004310337.1| GntR family transcriptional regulator with UTRA sensor domain
          [Clostridium lentocellum DSM 5427]
 gi|326543280|gb|ADZ85139.1| transcriptional regulator, GntR family with UTRA sensor domain
          [Clostridium lentocellum DSM 5427]
          Length = 245

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 34 CCISELFLFKILQPLVKAGIVETVRGRR 61
             S   + + +  LVKAG V++++G+ 
Sbjct: 38 YDCSRNTVRRAIAQLVKAGYVQSLQGKG 65


>gi|288919872|ref|ZP_06414195.1| O-methyltransferase family 2 [Frankia sp. EUN1f]
 gi|288348704|gb|EFC82958.1| O-methyltransferase family 2 [Frankia sp. EUN1f]
          Length = 361

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 19/89 (21%)

Query: 6   RTDY-GIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            T Y  +   +   +     D P  + ++A    ++   L  +L  LV AG++E      
Sbjct: 38  YTRYWAVVAALDLGVFEALADGPGGVDELAARTEVAPTRLVVVLDYLVAAGLLEA----- 92

Query: 62  GG---VRLCRPAD-------QITILDVVK 80
           GG     L   A        ++++ D+++
Sbjct: 93  GGERRFALTPAARCFLLRDSELSMADMLR 121


>gi|261406655|ref|YP_003242896.1| GntR family transcriptional regulator [Paenibacillus sp.
          Y412MC10]
 gi|261283118|gb|ACX65089.1| transcriptional regulator, GntR family [Paenibacillus sp.
          Y412MC10]
          Length = 221

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          R ++   +        +++AE+  +S   + +  Q L   G+V T  G+
Sbjct: 25 RWIIDGTLQPGEKLLDAELAESLGVSRTPIREAFQLLEVQGLVSTHPGK 73


>gi|271501126|ref|YP_003334151.1| GntR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344681|gb|ACZ77446.1| transcriptional regulator, GntR family [Dickeya dadantii Ech586]
          Length = 239

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           DY     Q+A    ++   L + +  LV  G+V+  RG  G + L RP
Sbjct: 30 GDYLPSEQQLAARYDVNRHTLRRAVDELVNKGLVQRRRGI-GILVLMRP 77


>gi|222086665|ref|YP_002545199.1| transcriptional regulator protein (repressor of nodulation genes)
          [Agrobacterium radiobacter K84]
 gi|221724113|gb|ACM27269.1| transcriptional regulator protein (repressor of nodulation genes)
          [Agrobacterium radiobacter K84]
          Length = 105

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          R+++ C++       +  +A    +S+  L + L  L    +V+T R
Sbjct: 25 RLMILCSLVKGE-VPVGVLANQVGLSQSALSQHLSKLRAQKLVKTRR 70


>gi|295839600|ref|ZP_06826533.1| GntR family transcriptional regulator [Streptomyces sp. SPB74]
 gi|197696821|gb|EDY43754.1| GntR family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 258

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++     IS + L K L  LV+ G++ +  GR 
Sbjct: 46 RELCAQLGISRVTLRKALHHLVERGVLRSSHGRG 79


>gi|148974202|ref|ZP_01811735.1| transcriptional regulator, MarR family protein [Vibrionales
          bacterium SWAT-3]
 gi|145965899|gb|EDK31147.1| transcriptional regulator, MarR family protein [Vibrionales
          bacterium SWAT-3]
          Length = 160

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 2  HLTKRTDYGIR----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           L+K  +YG+     +LM  AI       I +++    +S+     I+  L   G V+ +
Sbjct: 24 KLSK--EYGLTGPQLILMR-AIQEMGNVTIKELSNHTNVSQATTTTIIDRLEVNGYVQRI 80

Query: 58 R 58
          R
Sbjct: 81 R 81


>gi|146318005|ref|YP_001197717.1| CodY family transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320188|ref|YP_001199899.1| transcriptional repressor CodY [Streptococcus suis 98HAH33]
 gi|253751217|ref|YP_003024358.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis SC84]
 gi|253753118|ref|YP_003026258.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis P1/7]
 gi|253754940|ref|YP_003028080.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis BM407]
 gi|145688811|gb|ABP89317.1| Pleiotropic transcriptional repressor [Streptococcus suis 05ZYH33]
 gi|145690994|gb|ABP91499.1| Pleiotropic transcriptional repressor [Streptococcus suis 98HAH33]
 gi|251815506|emb|CAZ51085.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis SC84]
 gi|251817404|emb|CAZ55141.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis BM407]
 gi|251819363|emb|CAR44761.1| GTP-sensing transcriptional pleiotropic repressor [Streptococcus
           suis P1/7]
 gi|292557781|gb|ADE30782.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus suis GZ1]
 gi|319757491|gb|ADV69433.1| transcriptional repressor CodY [Streptococcus suis JS14]
          Length = 262

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|156740325|ref|YP_001430454.1| transcriptional regulator TrmB [Roseiflexus castenholzii DSM
          13941]
 gi|156231653|gb|ABU56436.1| transcriptional regulator, TrmB [Roseiflexus castenholzii DSM
          13941]
          Length = 209

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-G-----VR 65
          ++L Y   H +    I  + E   IS   + + L  L   G++ T + R G G       
Sbjct: 14 KILTYLRRHGEA--TIKDLEELLGISTTAVREHLAHLEAKGLLTTRQARGGPGRPRLVYS 71

Query: 66 LCRPADQ 72
          L   A+ 
Sbjct: 72 LTPRAED 78


>gi|53803557|ref|YP_114590.1| LexA repressor [Methylococcus capsulatus str. Bath]
 gi|71658816|sp|Q605V8|LEXA_METCA RecName: Full=LexA repressor
 gi|53757318|gb|AAU91609.1| LexA repressor [Methylococcus capsulatus str. Bath]
          Length = 202

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 20 HNDYPNRISQIAEACCISELF-LFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +  +P  I++IA A  +S    + + L+ L + G++E +     G+RL   A++
Sbjct: 21 NEGFPPTIAEIARAIGVSSPHGVREQLRALERKGVIELIPSASRGIRLLARAEE 74


>gi|53719314|ref|YP_108300.1| GntR family transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|76809394|ref|YP_333568.1| hypothetical protein BURPS1710b_2173 [Burkholderia pseudomallei
          1710b]
 gi|167719503|ref|ZP_02402739.1| hypothetical protein BpseD_10797 [Burkholderia pseudomallei DM98]
 gi|167894189|ref|ZP_02481591.1| hypothetical protein Bpse7_10586 [Burkholderia pseudomallei 7894]
 gi|217421792|ref|ZP_03453296.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          576]
 gi|237812328|ref|YP_002896779.1| transcriptonal regulator, GntR-family [Burkholderia pseudomallei
          MSHR346]
 gi|254179748|ref|ZP_04886347.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          1655]
 gi|254188856|ref|ZP_04895367.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254259701|ref|ZP_04950755.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          1710a]
 gi|254297597|ref|ZP_04965050.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          406e]
 gi|52209728|emb|CAH35694.1| putative GntR-family transcriptional regulator [Burkholderia
          pseudomallei K96243]
 gi|76578847|gb|ABA48322.1| unnamed protein product [Burkholderia pseudomallei 1710b]
 gi|157807975|gb|EDO85145.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          406e]
 gi|157936535|gb|EDO92205.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          Pasteur 52237]
 gi|184210288|gb|EDU07331.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          1655]
 gi|217395534|gb|EEC35552.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          576]
 gi|237504459|gb|ACQ96777.1| transcriptonal regulator, GntR-family [Burkholderia pseudomallei
          MSHR346]
 gi|254218390|gb|EET07774.1| transcriptional regulator, GntR family [Burkholderia pseudomallei
          1710a]
          Length = 222

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
                 + ++E   IS   L +I + L K G+++       GV +  P+   TILD+ +
Sbjct: 29 PGQRLSEAALSENLQISRNTLREIFRILTKEGLLKHE--PNRGVSVAIPSIA-TILDIYR 85

Query: 81 ATEESFFVAECFA 93
                 + EC A
Sbjct: 86 V----RRLIECQA 94


>gi|226947167|ref|YP_002802240.1| transcriptional regualtory protein, GlmR, DeoR family
          [Azotobacter vinelandii DJ]
 gi|226722094|gb|ACO81265.1| transcriptional regualtory protein, GlmR, DeoR family
          [Azotobacter vinelandii DJ]
          Length = 254

 Score = 33.8 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +L   A   +    + ++A     SE+ + K L  L K G++     R GG
Sbjct: 13 ILALLAERGE--VSVDELARRFETSEVTIRKDLAALEKNGLLL---RRYGG 58


>gi|332162801|ref|YP_004299378.1| transcription regulator ArsR [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325667031|gb|ADZ43675.1| transcription regulator ArsR [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|330858991|emb|CBX69349.1| biofilm growth-associated repressor [Yersinia enterocolitica
          W22703]
          Length = 109

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+     +     +S++ EA  I +  L + L  L   G+V T R
Sbjct: 32 LLLLCQLSQGEKAVSELEEALGIHQPTLSQQLAVLRSDGLVNTRR 76


>gi|320174758|gb|EFW49886.1| Regulator of L-galactonate catabolism YjjM [Shigella dysenteriae
          CDC 74-1112]
          Length = 301

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|318080492|ref|ZP_07987824.1| transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 379

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +AEA  +S   + + L  L +AG+V + R  RG   L
Sbjct: 324 LAEAHGLSAPEISRHLTVLKRAGLVTSSR--RGRYVL 358


>gi|318061579|ref|ZP_07980300.1| transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 380

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +AEA  +S   + + L  L +AG+V + R  RG   L
Sbjct: 325 LAEAHGLSAPEISRHLTVLKRAGLVTSSR--RGRYVL 359


>gi|313889631|ref|ZP_07823274.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121928|gb|EFR45024.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 260

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|312882188|ref|ZP_07741936.1| GntR domain-containing protein [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309370150|gb|EFP97654.1| GntR domain-containing protein [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 243

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 2  HLTKRTDYG--IRVLMY--CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
           LT +      +  L+        +       +A++  +S   +   L  L + GI+   
Sbjct: 17 RLTLKAQIADKLSALIVSQMIKEGEPLPSERDLAKSYNVSRETIRGALSLLSQKGIIAIS 76

Query: 58 RGRR 61
          RG++
Sbjct: 77 RGKK 80


>gi|310640535|ref|YP_003945293.1| acetoin transport repressor [Paenibacillus polymyxa SC2]
 gi|309245485|gb|ADO55052.1| Acetoin transport repressor [Paenibacillus polymyxa SC2]
          Length = 129

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 13 VLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++MY ++  D     +  ++    ++   + K  + L + G + +V+G+ 
Sbjct: 23 MIMYGSLQPDEQLPSVRALSAQLTVNPNTIQKAYRELEREGYIYSVQGKG 72


>gi|331681341|ref|ZP_08381978.1| YjjM protein product [Escherichia coli H299]
 gi|331081562|gb|EGI52723.1| YjjM protein product [Escherichia coli H299]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|299137636|ref|ZP_07030817.1| transcriptional regulator, HxlR family [Acidobacterium sp.
          MP5ACTX8]
 gi|298600277|gb|EFI56434.1| transcriptional regulator, HxlR family [Acidobacterium sp.
          MP5ACTX8]
          Length = 134

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          V+   A   +       + +   IS+  L K L+ L + G+V 
Sbjct: 42 VMSVLAEAGEPLRFSRVLEQVEGISQKSLTKTLRQLERDGLVT 84


>gi|262402232|ref|ZP_06078793.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio sp.
          RC586]
 gi|262351014|gb|EEZ00147.1| glycerol-3-phosphate regulon repressor DeoR family [Vibrio sp.
          RC586]
          Length = 253

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L  P D 
Sbjct: 11 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 66

Query: 73 ITI 75
          ++ 
Sbjct: 67 LSF 69


>gi|256389489|ref|YP_003111053.1| ArsR family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256355715|gb|ACU69212.1| transcriptional regulator, ArsR family [Catenulispora acidiphila
          DSM 44928]
          Length = 171

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCI---SELFLFKILQPLVKAGIVETVRGRR-GG 63
          R+L       D P  I+Q+AE   I   S     K+   L KAG+V  V  R+ GG
Sbjct: 28 RILRVL---RDKPATITQVAERLGIAKGSSNHHMKV---LAKAGLVAVVETRKVGG 77


>gi|237785657|ref|YP_002906362.1| DtxR family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758569|gb|ACR17819.1| transcriptional regulator, DtxR family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 224

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
           +R +         P R   IAE    S   + + +  + + G++     R   + L    
Sbjct: 12  LRTIYELDEEGITPLRAR-IAERLEQSGPTVSQTVARMERDGLLRVAEDRH--LELTDAG 68

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCP----LVGSCGLTSVL-RKALNAFFDVLTQY 125
            Q+ I     A      +AEC  S  +  P       +C    V+        +DVL   
Sbjct: 69  RQVAI-----AVMRKHRLAECLLSTTLKLPKEKVHEEACRWEHVMSDDVERRLYDVLDAP 123

Query: 126 S 126
           +
Sbjct: 124 T 124


>gi|229522542|ref|ZP_04411958.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TM 11079-80]
 gi|229340527|gb|EEO05533.1| 3-methyladenine DNA glycosylase [Vibrio cholerae TM 11079-80]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|221212634|ref|ZP_03585611.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
 gi|221167733|gb|EEE00203.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD1]
          Length = 273

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66
           + VL   A     P  +SQ+A    I +  L ++++ L   G V      RG   G+ L
Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIAL 79

Query: 67 CRPADQ 72
             A Q
Sbjct: 80 GPRAAQ 85


>gi|218681420|ref|ZP_03529317.1| transcriptional regulator, AraC family protein [Rhizobium etli
          CIAT 894]
          Length = 143

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--TVRGRRGGVRLCRP 69
          R + +   H +    + +I+EA  +S   L ++       G+V   ++ G   G RL R 
Sbjct: 6  RAIWFIESHFESDLSLEEISEAAGLSRYHLSRVF------GLVTGHSISGYIRGRRLSRA 59


>gi|182433937|ref|YP_001821656.1| GntR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178462453|dbj|BAG16973.1| putative GntR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 252

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++A+   +S   L + L  L++ G++  VRGR 
Sbjct: 47 ELAQEFGVSRGTLRRALTTLIEEGLLRQVRGRG 79


>gi|169349721|ref|ZP_02866659.1| hypothetical protein CLOSPI_00459 [Clostridium spiroforme DSM
          1552]
 gi|169293796|gb|EDS75929.1| hypothetical protein CLOSPI_00459 [Clostridium spiroforme DSM
          1552]
          Length = 121

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 18/45 (40%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
               +    + +++    I+   + K  + L + G + ++ G+ 
Sbjct: 27 LMQPEEKLPSVRELSSDMHINPNTVVKAYRILEQQGFIYSIPGKG 71


>gi|153824724|ref|ZP_01977391.1| ada regulatory protein [Vibrio cholerae MZO-2]
 gi|149741680|gb|EDM55709.1| ada regulatory protein [Vibrio cholerae MZO-2]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|147672093|ref|YP_001215063.1| Ada family transcriptional regulator [Vibrio cholerae O395]
 gi|262168852|ref|ZP_06036546.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC27]
 gi|146314476|gb|ABQ19016.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae O395]
 gi|227015663|gb|ACP11872.1| ada regulatory protein [Vibrio cholerae O395]
 gi|262022551|gb|EEY41258.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC27]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|145297941|ref|YP_001140782.1| carbohydrate kinase [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|142850713|gb|ABO89034.1| carbohydrate kinase, PfkB family [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 363

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
          +  D      ++A+   IS   L   +  L++ G V+       G  L      + I 
Sbjct: 12 LRQDPMIAQQELADRLGISRSALASHISSLMRQGYVQGR-----GYVLREGPYAVVIG 64


>gi|157156458|ref|YP_001465875.1| GntR family transcriptional regulator [Escherichia coli E24377A]
 gi|168749483|ref|ZP_02774505.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4113]
 gi|168754926|ref|ZP_02779933.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4401]
 gi|168760603|ref|ZP_02785610.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4501]
 gi|168766637|ref|ZP_02791644.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4486]
 gi|168773933|ref|ZP_02798940.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4196]
 gi|168781645|ref|ZP_02806652.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4076]
 gi|168797928|ref|ZP_02822935.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC508]
 gi|170683487|ref|YP_001746812.1| GntR family transcriptional regulator [Escherichia coli SMS-3-5]
 gi|191168965|ref|ZP_03030733.1| transcriptional regulator, GntR family [Escherichia coli B7A]
 gi|193063752|ref|ZP_03044840.1| transcriptional regulator, GntR family [Escherichia coli E22]
 gi|195937630|ref|ZP_03083012.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. EC4024]
 gi|208807682|ref|ZP_03250019.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4206]
 gi|208813022|ref|ZP_03254351.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4045]
 gi|208821317|ref|ZP_03261637.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4042]
 gi|209398199|ref|YP_002273879.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4115]
 gi|209921824|ref|YP_002295908.1| hypothetical protein ECSE_4633 [Escherichia coli SE11]
 gi|217324989|ref|ZP_03441073.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. TW14588]
 gi|218556893|ref|YP_002389807.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI1]
 gi|218698195|ref|YP_002405862.1| putative DNA-binding transcriptional regulator [Escherichia coli
          55989]
 gi|218708036|ref|YP_002415555.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UMN026]
 gi|237704095|ref|ZP_04534576.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|254796354|ref|YP_003081191.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. TW14359]
 gi|256025277|ref|ZP_05439142.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
          4_1_40B]
 gi|261226715|ref|ZP_05940996.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261256901|ref|ZP_05949434.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291285737|ref|YP_003502555.1| transcriptional regulator, GntR family [Escherichia coli O55:H7
          str. CB9615]
 gi|293403027|ref|ZP_06647124.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293408043|ref|ZP_06651883.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417831|ref|ZP_06660453.1| yjjM protein [Escherichia coli B185]
 gi|293476622|ref|ZP_06665030.1| yjjM protein [Escherichia coli B088]
 gi|298378555|ref|ZP_06988439.1| yjjM protein [Escherichia coli FVEC1302]
 gi|300823811|ref|ZP_07103936.1| FCD domain protein [Escherichia coli MS 119-7]
 gi|300899315|ref|ZP_07117581.1| FCD domain protein [Escherichia coli MS 198-1]
 gi|300905342|ref|ZP_07123113.1| FCD domain protein [Escherichia coli MS 84-1]
 gi|300926406|ref|ZP_07142202.1| FCD domain protein [Escherichia coli MS 182-1]
 gi|300932034|ref|ZP_07147329.1| FCD domain protein [Escherichia coli MS 187-1]
 gi|300939342|ref|ZP_07154010.1| FCD domain protein [Escherichia coli MS 21-1]
 gi|301021398|ref|ZP_07185424.1| FCD domain protein [Escherichia coli MS 69-1]
 gi|301022260|ref|ZP_07186158.1| FCD domain protein [Escherichia coli MS 196-1]
 gi|301303457|ref|ZP_07209580.1| FCD domain protein [Escherichia coli MS 124-1]
 gi|301330296|ref|ZP_07222948.1| FCD domain protein [Escherichia coli MS 78-1]
 gi|301646874|ref|ZP_07246720.1| FCD domain protein [Escherichia coli MS 146-1]
 gi|307136557|ref|ZP_07495913.1| transcriptional regulator, GntR family protein [Escherichia coli
          H736]
 gi|307313707|ref|ZP_07593326.1| transcriptional regulator, GntR family [Escherichia coli W]
 gi|309795633|ref|ZP_07690049.1| FCD domain protein [Escherichia coli MS 145-7]
 gi|312966071|ref|ZP_07780297.1| FCD domain protein [Escherichia coli 2362-75]
 gi|331640398|ref|ZP_08341546.1| YjjM protein product [Escherichia coli H736]
 gi|331650843|ref|ZP_08351871.1| YjjM protein product [Escherichia coli M718]
 gi|331666026|ref|ZP_08366920.1| YjjM protein product [Escherichia coli TA143]
 gi|331671480|ref|ZP_08372278.1| YjjM protein product [Escherichia coli TA280]
 gi|331680468|ref|ZP_08381127.1| YjjM protein product [Escherichia coli H591]
 gi|157078488|gb|ABV18196.1| transcriptional regulator, GntR family [Escherichia coli E24377A]
 gi|170521205|gb|ACB19383.1| transcriptional regulator, GntR family [Escherichia coli SMS-3-5]
 gi|187770289|gb|EDU34133.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4196]
 gi|188016181|gb|EDU54303.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4113]
 gi|189000658|gb|EDU69644.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4076]
 gi|189357890|gb|EDU76309.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4401]
 gi|189364129|gb|EDU82548.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4486]
 gi|189368887|gb|EDU87303.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4501]
 gi|189379529|gb|EDU97945.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC508]
 gi|190901012|gb|EDV60793.1| transcriptional regulator, GntR family [Escherichia coli B7A]
 gi|192930739|gb|EDV83345.1| transcriptional regulator, GntR family [Escherichia coli E22]
 gi|208727483|gb|EDZ77084.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4206]
 gi|208734299|gb|EDZ82986.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4045]
 gi|208741440|gb|EDZ89122.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4042]
 gi|209159599|gb|ACI37032.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. EC4115]
 gi|209915083|dbj|BAG80157.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217321210|gb|EEC29634.1| transcriptional regulator, GntR family [Escherichia coli O157:H7
          str. TW14588]
 gi|218354927|emb|CAV02140.1| putative DNA-binding transcriptional regulator [Escherichia coli
          55989]
 gi|218363662|emb|CAR01320.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI1]
 gi|218435133|emb|CAR16091.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UMN026]
 gi|226902007|gb|EEH88266.1| transcriptional regulator [Escherichia sp. 3_2_53FAA]
 gi|254595754|gb|ACT75115.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. TW14359]
 gi|281181501|dbj|BAI57831.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284924537|emb|CBG37676.1| GntR-family transcriptional regulator [Escherichia coli 042]
 gi|290765610|gb|ADD59571.1| transcriptional regulator, GntR family [Escherichia coli O55:H7
          str. CB9615]
 gi|291321075|gb|EFE60517.1| yjjM protein [Escherichia coli B088]
 gi|291429942|gb|EFF02956.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291430549|gb|EFF03547.1| yjjM protein [Escherichia coli B185]
 gi|291472294|gb|EFF14776.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280889|gb|EFI22390.1| yjjM protein [Escherichia coli FVEC1302]
 gi|299881310|gb|EFI89521.1| FCD domain protein [Escherichia coli MS 196-1]
 gi|300357094|gb|EFJ72964.1| FCD domain protein [Escherichia coli MS 198-1]
 gi|300398139|gb|EFJ81677.1| FCD domain protein [Escherichia coli MS 69-1]
 gi|300402830|gb|EFJ86368.1| FCD domain protein [Escherichia coli MS 84-1]
 gi|300417513|gb|EFK00824.1| FCD domain protein [Escherichia coli MS 182-1]
 gi|300455746|gb|EFK19239.1| FCD domain protein [Escherichia coli MS 21-1]
 gi|300460179|gb|EFK23672.1| FCD domain protein [Escherichia coli MS 187-1]
 gi|300523723|gb|EFK44792.1| FCD domain protein [Escherichia coli MS 119-7]
 gi|300841184|gb|EFK68944.1| FCD domain protein [Escherichia coli MS 124-1]
 gi|300843718|gb|EFK71478.1| FCD domain protein [Escherichia coli MS 78-1]
 gi|301074927|gb|EFK89733.1| FCD domain protein [Escherichia coli MS 146-1]
 gi|306906530|gb|EFN37043.1| transcriptional regulator, GntR family [Escherichia coli W]
 gi|308120757|gb|EFO58019.1| FCD domain protein [Escherichia coli MS 145-7]
 gi|309704817|emb|CBJ04168.1| GntR-family transcriptional regulator [Escherichia coli ETEC
          H10407]
 gi|312289314|gb|EFR17208.1| FCD domain protein [Escherichia coli 2362-75]
 gi|315063661|gb|ADT77988.1| L-galactonate gene regulator [Escherichia coli W]
 gi|315255785|gb|EFU35753.1| FCD domain protein [Escherichia coli MS 85-1]
 gi|315284696|gb|EFU44141.1| FCD domain protein [Escherichia coli MS 110-3]
 gi|315616275|gb|EFU96894.1| FCD domain protein [Escherichia coli 3431]
 gi|320190524|gb|EFW65174.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli
          O157:H7 str. EC1212]
 gi|320200524|gb|EFW75110.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli
          EC4100B]
 gi|320638738|gb|EFX08396.1| transcriptional regulator, GntR family protein [Escherichia coli
          O157:H7 str. G5101]
 gi|320644450|gb|EFX13515.1| transcriptional regulator, GntR family protein [Escherichia coli
          O157:H- str. 493-89]
 gi|320649768|gb|EFX18292.1| transcriptional regulator, GntR family protein [Escherichia coli
          O157:H- str. H 2687]
 gi|320654818|gb|EFX22787.1| transcriptional regulator, GntR family protein [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320660670|gb|EFX28131.1| transcriptional regulator, GntR family protein [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320665597|gb|EFX32643.1| transcriptional regulator, GntR family protein [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323181898|gb|EFZ67310.1| FCD domain protein [Escherichia coli 1357]
 gi|323189798|gb|EFZ75076.1| FCD domain protein [Escherichia coli RN587/1]
 gi|323380258|gb|ADX52526.1| transcriptional regulator, GntR family [Escherichia coli KO11]
 gi|323945877|gb|EGB41922.1| FCD domain-containing protein [Escherichia coli H120]
 gi|323955314|gb|EGB51086.1| FCD domain-containing protein [Escherichia coli H263]
 gi|323965481|gb|EGB60936.1| FCD domain-containing protein [Escherichia coli M863]
 gi|324016900|gb|EGB86119.1| FCD domain protein [Escherichia coli MS 117-3]
 gi|324118564|gb|EGC12457.1| FCD domain-containing protein [Escherichia coli E1167]
 gi|326345327|gb|EGD69070.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli
          O157:H7 str. 1125]
 gi|326346819|gb|EGD70553.1| Regulator of L-galactonate catabolism YjjM [Escherichia coli
          O157:H7 str. 1044]
 gi|327250289|gb|EGE62008.1| FCD domain protein [Escherichia coli STEC_7v]
 gi|331040144|gb|EGI12351.1| YjjM protein product [Escherichia coli H736]
 gi|331051297|gb|EGI23346.1| YjjM protein product [Escherichia coli M718]
 gi|331057077|gb|EGI29071.1| YjjM protein product [Escherichia coli TA143]
 gi|331071325|gb|EGI42682.1| YjjM protein product [Escherichia coli TA280]
 gi|331071931|gb|EGI43267.1| YjjM protein product [Escherichia coli H591]
 gi|332346404|gb|AEE59738.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|49176497|ref|YP_026290.1| DNA-binding transcriptional activator for yjjMN; mutants fail to
          grow on L-galactonate [Escherichia coli str. K-12
          substr. MG1655]
 gi|89111066|ref|AP_004846.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K-12 substr. W3110]
 gi|193070099|ref|ZP_03051045.1| transcriptional regulator, GntR family [Escherichia coli E110019]
 gi|218561534|ref|YP_002394447.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|238903445|ref|YP_002929241.1| putative DNA-binding transcriptional regulator [Escherichia coli
          BW2952]
 gi|256019989|ref|ZP_05433854.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|312970046|ref|ZP_07784228.1| FCD domain protein [Escherichia coli 1827-70]
 gi|332281135|ref|ZP_08393548.1| conserved hypothetical protein [Shigella sp. D9]
 gi|54042332|sp|P39399|YJJM_ECOLI RecName: Full=Probable HTH-type transcriptional regulator YjjM
 gi|48995005|gb|AAT48248.1| DNA-binding transcriptional activator for yjjMN; mutants fail to
          grow on L-galactonate [Escherichia coli str. K-12
          substr. MG1655]
 gi|85677097|dbj|BAE78347.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K12 substr. W3110]
 gi|192956552|gb|EDV87009.1| transcriptional regulator, GntR family [Escherichia coli E110019]
 gi|218368303|emb|CAR06122.1| putative DNA-binding transcriptional regulator [Escherichia coli
          S88]
 gi|238862297|gb|ACR64295.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          BW2952]
 gi|260450831|gb|ACX41253.1| transcriptional regulator, GntR family [Escherichia coli DH1]
 gi|310337544|gb|EFQ02655.1| FCD domain protein [Escherichia coli 1827-70]
 gi|315138911|dbj|BAJ46070.1| putative DNA-binding transcriptional regulator [Escherichia coli
          DH1]
 gi|320179343|gb|EFW54301.1| Regulator of L-galactonate catabolism YjjM [Shigella boydii ATCC
          9905]
 gi|323166164|gb|EFZ51942.1| FCD domain protein [Shigella sonnei 53G]
 gi|323939711|gb|EGB35914.1| FCD domain-containing protein [Escherichia coli E482]
 gi|323975883|gb|EGB70979.1| FCD domain-containing protein [Escherichia coli TW10509]
 gi|332103487|gb|EGJ06833.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 304

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|15601771|ref|NP_233402.1| ada regulatory protein [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587006|ref|ZP_01676784.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 2740-80]
 gi|121726607|ref|ZP_01679843.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae V52]
 gi|153817633|ref|ZP_01970300.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae NCTC 8457]
 gi|153823361|ref|ZP_01976028.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae B33]
 gi|227812583|ref|YP_002812593.1| ada regulatory protein [Vibrio cholerae M66-2]
 gi|229505849|ref|ZP_04395358.1| 3-methyladenine DNA glycosylase [Vibrio cholerae BX 330286]
 gi|229510297|ref|ZP_04399777.1| 3-methyladenine DNA glycosylase [Vibrio cholerae B33]
 gi|229517572|ref|ZP_04407017.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC9]
 gi|229605382|ref|YP_002876086.1| 3-methyladenine DNA glycosylase [Vibrio cholerae MJ-1236]
 gi|254850178|ref|ZP_05239528.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746251|ref|ZP_05420198.1| ADA regulatory protein [Vibrio cholera CIRS 101]
 gi|262158134|ref|ZP_06029252.1| ADA regulatory protein [Vibrio cholerae INDRE 91/1]
 gi|298499786|ref|ZP_07009592.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9658461|gb|AAF96914.1| ada regulatory protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548741|gb|EAX58788.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae 2740-80]
 gi|121630913|gb|EAX63293.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae V52]
 gi|126511789|gb|EAZ74383.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae NCTC 8457]
 gi|126519134|gb|EAZ76357.1| transcriptional regulator, Ada family/DNA-3-methyladenine
           glycosylase II [Vibrio cholerae B33]
 gi|227011725|gb|ACP07936.1| ada regulatory protein [Vibrio cholerae M66-2]
 gi|229345608|gb|EEO10581.1| 3-methyladenine DNA glycosylase [Vibrio cholerae RC9]
 gi|229352742|gb|EEO17682.1| 3-methyladenine DNA glycosylase [Vibrio cholerae B33]
 gi|229356200|gb|EEO21118.1| 3-methyladenine DNA glycosylase [Vibrio cholerae BX 330286]
 gi|229371868|gb|ACQ62290.1| 3-methyladenine DNA glycosylase [Vibrio cholerae MJ-1236]
 gi|254845883|gb|EET24297.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736005|gb|EET91403.1| ADA regulatory protein [Vibrio cholera CIRS 101]
 gi|262030012|gb|EEY48658.1| ADA regulatory protein [Vibrio cholerae INDRE 91/1]
 gi|297541767|gb|EFH77818.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 452

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           +R L       +    +  +A    IS+ +L ++ Q 
Sbjct: 91  LRALTLI-EQGELDGSLETLASRLGISDRYLRQLFQR 126


>gi|329117679|ref|ZP_08246396.1| transcriptional regulator, GntR family [Streptococcus parauberis
          NCFD 2020]
 gi|326908084|gb|EGE54998.1| transcriptional regulator, GntR family [Streptococcus parauberis
          NCFD 2020]
          Length = 122

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    + + AE   ++   + +    L + G+V + R
Sbjct: 31 GDQLPTVREYAENAGVNPNTMQRAFTELEREGMVYSQR 68


>gi|307302723|ref|ZP_07582479.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307318571|ref|ZP_07598005.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306895911|gb|EFN26663.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306903087|gb|EFN33678.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 312

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 25  NRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRL-CRPADQI 73
             ++++AE   IS   + +I      AG + ++  GRRG   L  R  ++ 
Sbjct: 239 VSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEY 289


>gi|281356546|ref|ZP_06243038.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
 gi|281317238|gb|EFB01260.1| transcriptional regulator, AraC family [Victivallis vadensis ATCC
           BAA-548]
          Length = 302

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           ++L Y   H D P+ I +IA    +S   L ++ + 
Sbjct: 200 KILRYLDAHLDRPHTIERIAAEFRLSPATLHRLFRK 235


>gi|218752490|ref|ZP_03531286.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
          Length = 138

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               D    ++++AE        + + L  L  A +V T R
Sbjct: 34 LWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRR 75


>gi|315231001|ref|YP_004071437.1| transcriptional regulator [Thermococcus barophilus MP]
 gi|315184029|gb|ADT84214.1| transcriptional regulator [Thermococcus barophilus MP]
          Length = 97

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKI-LQPLVKAGIVETV 57
          ++++   A  N     +++IA +  IS   L K+ L+ L KAGIV++ 
Sbjct: 19 LKIVALLAREN-RVMYLNEIANSLGISRA-LAKVHLKKLEKAGIVKSK 64


>gi|194016220|ref|ZP_03054834.1| HTH-type transcriptional regulator LrpC [Bacillus pumilus ATCC
          7061]
 gi|194011693|gb|EDW21261.1| HTH-type transcriptional regulator LrpC [Bacillus pumilus ATCC
          7061]
          Length = 159

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          M +T   D  + +L       D    + ++++   +S   + + ++ L  AGI+E
Sbjct: 1  MKIT---DVDVHILNEL--KEDARLSMRELSKRVNLSAPAVAERVRKLEDAGIIE 50


>gi|146305373|ref|YP_001185838.1| ArsR family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573574|gb|ABP83106.1| transcriptional regulator, ArsR family [Pseudomonas mendocina
          ymp]
          Length = 104

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71
          L+     +     +S++     I +  L + L  L + G+VET R G++   R+  PA 
Sbjct: 30 LLLLCQLSQGERNVSELETLLGIQQPTLSQQLAVLRREGLVETRRDGKQIFYRISSPAA 88


>gi|56420280|ref|YP_147598.1| trehalose operon transcriptional repressor [Geobacillus
           kaustophilus HTA426]
 gi|56380122|dbj|BAD76030.1| transcriptional repressor of trehalose operon (GntR family)
           [Geobacillus kaustophilus HTA426]
          Length = 282

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A     S   + K L  L + G ++ ++G+ 
Sbjct: 71  DKLPSEHELAARYETSRETIRKALHLLSEHGYIQKMKGKG 110


>gi|110635610|ref|YP_675818.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286594|gb|ABG64653.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1]
          Length = 261

 Score = 33.8 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 38/134 (28%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--------RLCRPA 70
              D      ++A    +S   + + L+ L  +G+V+  +G +GG          L    
Sbjct: 37  RPGDKLPSERELANQLNVSRNAVREALRMLEMSGVVKLQKGAKGGAFIGDGNAEVLATGL 96

Query: 71  DQ----------------ITILDVV------KATEESFFVAE--------CFASHKIDCP 100
                             I + ++V      +ATE    + E        CFA   +D  
Sbjct: 97  KDLLNLRGLTIEQLTESRIWLAEIVVRVACERATERDLDLLEANIDEAERCFARGDLDGK 156

Query: 101 LVGSCGLTSVLRKA 114
           L       ++L +A
Sbjct: 157 LACQIEFHNILARA 170


>gi|332083703|gb|EGI88921.1| hypothetical protein SD15574_5359 [Shigella dysenteriae 155-74]
          Length = 146

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|331266725|ref|YP_004326355.1| transcriptional regulator, DeoR family [Streptococcus oralis Uo5]
 gi|326683397|emb|CBZ01015.1| transcriptional regulator, DeoR family [Streptococcus oralis Uo5]
          Length = 300

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRP 69
           R+L Y  +         ++A    +S   +++ ++ L  AGI + +V G+ GG+ L + 
Sbjct: 7  FRIL-YLLLEKGS-TTAPELARLFEVSVRTIYRDIERLSMAGIPLYSVPGKTGGIFLMKD 64


>gi|325279792|ref|YP_004252334.1| transcriptional regulator, Crp/Fnr family [Odoribacter splanchnicus
           DSM 20712]
 gi|324311601|gb|ADY32154.1| transcriptional regulator, Crp/Fnr family [Odoribacter splanchnicus
           DSM 20712]
          Length = 209

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           R+L Y    ++ P    +IA+   ++   L ++L  L   G + 
Sbjct: 153 RLLAYL-REHENPRSRQEIADILGVARPSLARVLSELADEGYLR 195


>gi|320185825|gb|EFW60578.1| Regulator of L-galactonate catabolism YjjM [Shigella flexneri CDC
          796-83]
 gi|332090544|gb|EGI95642.1| FCD domain protein [Shigella boydii 3594-74]
          Length = 304

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|330944832|ref|XP_003306428.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1]
 gi|311316041|gb|EFQ85452.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1]
          Length = 294

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 7   TDYGIRVLMYCAIHNDYPNRISQIAEACCI 36
           T+Y IR++ + A  ++ P  + ++AE   I
Sbjct: 151 TEYAIRIMRWLAF-SERPLSLDELAEVIAI 179


>gi|307294306|ref|ZP_07574150.1| regulatory protein MarR [Sphingobium chlorophenolicum L-1]
 gi|306880457|gb|EFN11674.1| regulatory protein MarR [Sphingobium chlorophenolicum L-1]
          Length = 135

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           LM        P+ +  +AEA  +S+  + + L  L   G +   R
Sbjct: 45 ALMLTVYIGAGPHTVRGLAEALNVSKPVITRALNKLSALGYLRRER 90


>gi|300815982|ref|ZP_07096205.1| FCD domain protein [Escherichia coli MS 107-1]
 gi|331666184|ref|ZP_08367065.1| YjjM protein product [Escherichia coli TA271]
 gi|300531189|gb|EFK52251.1| FCD domain protein [Escherichia coli MS 107-1]
 gi|331066395|gb|EGI38272.1| YjjM protein product [Escherichia coli TA271]
          Length = 304

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|292656538|ref|YP_003536435.1| transcription regulator [Haloferax volcanii DS2]
 gi|291372108|gb|ADE04335.1| transcription regulator [Haloferax volcanii DS2]
          Length = 161

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R ++Y    +        IA+    S+  + K +Q L   G+V+
Sbjct: 11 RAILYALQEDARNMSSGDIAKRTGTSDSTVRKRIQRLESEGVVK 54


>gi|302868261|ref|YP_003836898.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
 gi|315505358|ref|YP_004084245.1| transcriptional regulator, arsr family [Micromonospora sp. L5]
 gi|302571120|gb|ADL47322.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
 gi|315411977|gb|ADU10094.1| transcriptional regulator, ArsR family [Micromonospora sp. L5]
          Length = 120

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRP 69
           +R+L       +    +S +     +S+  +   L+ L +AG++E   RG     RL   
Sbjct: 40  LRLLSLIQSAPEGEASVSDLTAPLGLSQPTVSHHLRILTEAGLLEREKRGVWAYYRLV-- 97

Query: 70  ADQIT 74
              I+
Sbjct: 98  PSAIS 102


>gi|261407355|ref|YP_003243596.1| AraC family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261283818|gb|ACX65789.1| transcriptional regulator, AraC family [Paenibacillus sp. Y412MC10]
          Length = 778

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
           RV  +   H D  + ++  AE   +S  +L ++ + 
Sbjct: 680 RVCGHICRHPDGAHSLADCAELVGVSPSYLSRLFKK 715


>gi|260460875|ref|ZP_05809125.1| ROK family protein [Mesorhizobium opportunistum WSM2075]
 gi|259033452|gb|EEW34713.1| ROK family protein [Mesorhizobium opportunistum WSM2075]
          Length = 388

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 24/92 (26%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR----GRR------ 61
           R+++  +I  + P     IA    ++   +  I++ L + G + ++R    GR       
Sbjct: 17  RIVLE-SIRRNGPIARGDIARHVGLTVQTVSTIVRELEEQGYILSLREEPKGRGLPPATL 75

Query: 62  -----GGVR-------LCRPADQITI-LDVVK 80
                GG         L   A  I +  DV++
Sbjct: 76  RINPEGGYAVGIHLTPLGIDAALINLSGDVIE 107


>gi|257871084|ref|ZP_05650737.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus gallinarum EG2]
 gi|257805248|gb|EEV34070.1| CBS:Thioesterase superfamily:DRTGG [Enterococcus gallinarum EG2]
          Length = 443

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR----LCRPADQITILD 77
               +  IA+   +SE   ++ ++     G+V T++ R G +R    L +  +++T  +
Sbjct: 18 GDRISVRGIAKDLGVSEGTAYRAIKDAENIGLVSTIQ-RVGTIRIERKLKKHIEKLTFGE 76

Query: 78 VVKATEESF 86
          VV+  E   
Sbjct: 77 VVQIIEGEV 85


>gi|258655318|ref|YP_003204474.1| ArsR family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258558543|gb|ACV81485.1| transcriptional regulator, ArsR family [Nakamurella multipartita
          DSM 44233]
          Length = 118

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            A  +  P  ++++AE   I++  + K +Q L +AG+V   R
Sbjct: 26 MIARLSRGPATVNELAEPFAITKQAVSKHIQVLEQAGLVTRTR 68


>gi|297561868|ref|YP_003680842.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296846316|gb|ADH68336.1| regulatory protein, MarR [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
          Length = 163

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          R++ Y  + +       +IA+   +S   + + ++ L + G VE V    
Sbjct: 36 RIVGYLLVADREAVSAEEIADGARVSRGSVSQSVRRLREMGFVELVPAPG 85


>gi|225568690|ref|ZP_03777715.1| hypothetical protein CLOHYLEM_04768 [Clostridium hylemonae DSM
          15053]
 gi|225162189|gb|EEG74808.1| hypothetical protein CLOHYLEM_04768 [Clostridium hylemonae DSM
          15053]
          Length = 122

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L ++G+V + R
Sbjct: 31 GDKLPSVRDLALDAAVNPNTMQKALSELERSGLVYSQR 68


>gi|251798463|ref|YP_003013194.1| signal transduction protein with CBS and DRTGG domains
          [Paenibacillus sp. JDR-2]
 gi|247546089|gb|ACT03108.1| putative signal transduction protein with CBS and DRTGG domains
          [Paenibacillus sp. JDR-2]
          Length = 445

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR----PADQITILD 77
               +  IA+A  +SE   +K ++    +G+V T   R G VR+ R      DQ+T  +
Sbjct: 26 GEKISVRAIAKALGVSEGTAYKAIKEAEASGLVSTKE-RIGTVRIDRRRREALDQLTFGE 84

Query: 78 VVKATEESFF 87
          V +  E   F
Sbjct: 85 VAEIVEGHIF 94


>gi|163751427|ref|ZP_02158652.1| transcriptional regulator, DeoR family protein [Shewanella
          benthica KT99]
 gi|161328730|gb|EDP99878.1| transcriptional regulator, DeoR family protein [Shewanella
          benthica KT99]
          Length = 256

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          ++ D    + ++A     SE+ + K L  L K G++     R GG
Sbjct: 17 LNGDGEVSVDELALRFETSEVTIRKDLSALEKTGLLL---RRYGG 58


>gi|152984489|ref|YP_001350811.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150959647|gb|ABR81672.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 257

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 30  IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD-VVKATEESFFV 88
           +AE   +S   L + +Q LV  G++ + +G  GG  +       T  D ++   E +   
Sbjct: 40  LAEQFGVSRPSLREAIQKLVAKGLLVSRQG--GGNYVTESLGA-TFSDPLLHLLEGNPDA 96

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
                  +    L GSC           A++  L   S++
Sbjct: 97  QRDLLEFRHT--LEGSC-----------AYYAALRATSLD 123


>gi|323969458|gb|EGB64751.1| FCD domain-containing protein [Escherichia coli TA007]
          Length = 286

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 14 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 54


>gi|88854311|ref|ZP_01128978.1| putative GntR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
 gi|88816119|gb|EAR25974.1| putative GntR-family transcriptional regulator [marine
           actinobacterium PHSC20C1]
          Length = 267

 Score = 33.8 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
              +     + +A    ++   + + L  L   G+V T RGR GG
Sbjct: 63  RAGERLPSENDLARTFGVAPTTVRESLLALRGRGLVVTRRGRNGG 107


>gi|330974265|gb|EGH74331.1| regulatory protein, IclR [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 279

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 20/82 (24%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL 66
          +R L  C   ++   R++Q+A+   +S+    ++L+ L++ G+VE    + R      RL
Sbjct: 26 LRCLGDC---DEGGERVTQLAQRVGLSQPTTHRLLRSLMEEGMVEQDLLSKR-----YRL 77

Query: 67 --------CRPADQITILDVVK 80
                   +  +   + DVV+
Sbjct: 78 SIEFFALAAKAGNTGNLRDVVR 99


>gi|330816096|ref|YP_004359801.1| IclR family regulatory protein [Burkholderia gladioli BSR3]
 gi|327368489|gb|AEA59845.1| IclR family regulatory protein [Burkholderia gladioli BSR3]
          Length = 274

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 27 GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 70


>gi|328544267|ref|YP_004304376.1| transcriptional regulator, GntR family [polymorphum gilvum
          SL003B-26A1]
 gi|326414009|gb|ADZ71072.1| Transcriptional regulator, GntR family [Polymorphum gilvum
          SL003B-26A1]
          Length = 232

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +A    +S   L K+L  L   G++++++G  
Sbjct: 49 LAAEFGVSRTPLRKVLARLESDGLLQSIQGVG 80


>gi|313901917|ref|ZP_07835335.1| biotin/acetyl-CoA-carboxylase ligase [Thermaerobacter
          subterraneus DSM 13965]
 gi|313467812|gb|EFR63308.1| biotin/acetyl-CoA-carboxylase ligase [Thermaerobacter
          subterraneus DSM 13965]
          Length = 352

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL         P   + +AE   I+   L+K ++ L + G  VE       G  L
Sbjct: 17 RVLAALLAAGGQPVSGATLAEGLGITRAALWKHIEALRRDGWPVEGR--PHQGYTL 70


>gi|282861243|ref|ZP_06270308.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
 gi|282563901|gb|EFB69438.1| Helix-turn-helix type 11 domain protein [Streptomyces sp. ACTE]
          Length = 321

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              +++AE   +S   +++ ++ L  +G+ V   RGR GG+ L
Sbjct: 18 LVPATELAERLEVSVRTIYRDVEALSASGVPVYAERGRNGGIAL 61


>gi|256157761|ref|ZP_05455679.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M490/95/1]
 gi|256253271|ref|ZP_05458807.1| Bacterial regulatory protein, GntR family [Brucella ceti B1/94]
 gi|261220387|ref|ZP_05934668.1| GntR domain-containing protein [Brucella ceti B1/94]
 gi|265996264|ref|ZP_06108821.1| GntR domain-containing protein [Brucella ceti M490/95/1]
 gi|260918971|gb|EEX85624.1| GntR domain-containing protein [Brucella ceti B1/94]
 gi|262550561|gb|EEZ06722.1| GntR domain-containing protein [Brucella ceti M490/95/1]
          Length = 270

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|257057591|ref|YP_003135423.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256587463|gb|ACU98596.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 323

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +  L++  + +     ++++A+A  +S+  + + L  L  +G+ + T  GR GGVRL
Sbjct: 6  LVALLF-TLQSRRSATVAELAKALGVSQRTMHRDLAALQASGVPLWTEPGRYGGVRL 61


>gi|226361502|ref|YP_002779280.1| transcriptional regulator CatR [Rhodococcus opacus B4]
 gi|226239987|dbj|BAH50335.1| putative transcriptional regulator CatR [Rhodococcus opacus B4]
          Length = 260

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          +  A     PN  ++++A    +S   + +IL  L K G V    G  G   L      +
Sbjct: 22 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA---GSGGRWSLT--PRVL 76

Query: 74 TILD 77
          +I  
Sbjct: 77 SIGQ 80


>gi|261366581|ref|ZP_05979464.1| biotin-[acetyl-CoA-carboxylase] ligase [Subdoligranulum variabile
          DSM 15176]
 gi|282571400|gb|EFB76935.1| biotin-[acetyl-CoA-carboxylase] ligase [Subdoligranulum variabile
          DSM 15176]
          Length = 332

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
          VL              ++A+   +S   ++K +  L   G+ +E V  R  G RLC  A 
Sbjct: 6  VLAALECARGRYLSGQELAQQLGVSRTAVWKAVAALRADGVPIEAVTNR--GYRLCPEA- 62

Query: 72 QITILDVVKAT 82
           I   D V A 
Sbjct: 63 DILHGDAVTAL 73


>gi|221196777|ref|ZP_03569824.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
 gi|221203446|ref|ZP_03576465.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221177380|gb|EEE09808.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2]
 gi|221183331|gb|EEE15731.1| transcriptional regulator, IclR family [Burkholderia multivorans
          CGD2M]
          Length = 273

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE---TVRGRRGGVRL 66
           + VL   A     P  +SQ+A    I +  L ++++ L   G V      RG   G+ L
Sbjct: 21 ALAVLEALAS-GGQPYTLSQLAARLHIPKATLLRLIESLETRGYVIHMPDSRGHDRGIAL 79

Query: 67 CRPADQ 72
             A Q
Sbjct: 80 GPRAAQ 85


>gi|182439304|ref|YP_001827023.1| ArsR family transcriptional regulator [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178467820|dbj|BAG22340.1| putative ArsR-family transcriptional regulator [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 132

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
          IRVL      ++  + +S++     +    L + L  L +AG+V   R G      L  P
Sbjct: 22 IRVLELL---SEREHAVSEMLNEVGVEAAHLSQQLAVLRRAGLVTARREGSAVHYTLADP 78

Query: 70 ADQITILDVVKA 81
               + ++++ 
Sbjct: 79 G----VAELLRV 86


>gi|148558172|ref|YP_001257230.1| GntR family regulatory protein [Brucella ovis ATCC 25840]
 gi|148369457|gb|ABQ62329.1| bacterial regulatory protein, GntR family:Bacterial regulatory
          protein, DeoR family [Brucella ovis ATCC 25840]
          Length = 270

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|126641135|ref|YP_001084119.1| GntR family transcriptional regulator [Acinetobacter baumannii
          ATCC 17978]
          Length = 191

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
            +S + + + L  L   G+++T RGR GG  +C     
Sbjct: 1  MGVSPITVREALNTLRVKGLIDTRRGRNGGSFVCELPSD 39


>gi|172060136|ref|YP_001807788.1| IclR family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171992653|gb|ACB63572.1| transcriptional regulator, IclR family [Burkholderia ambifaria
          MC40-6]
          Length = 230

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +T     G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 20 ITALAR-GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 69


>gi|120601741|ref|YP_966141.1| biotin--acetyl-CoA-carboxylase ligase [Desulfovibrio vulgaris
          DP4]
 gi|120561970|gb|ABM27714.1| biotin--acetyl-CoA-carboxylase ligase [Desulfovibrio vulgaris
          DP4]
          Length = 330

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCR 68
          RVL       D      +++    +S   + K ++ L  AG V    T RG     RL R
Sbjct: 12 RVLERL-FEADGWCSGEELSRELGVSRAAVGKHVRALRAAGYVIEAVTRRG----YRLDR 66

Query: 69 PADQITILDVVK--ATE 83
                  +V++  ATE
Sbjct: 67 TTAPFEAAEVLRGLATE 83


>gi|15609777|ref|NP_217156.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          H37Rv]
 gi|15842181|ref|NP_337218.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          CDC1551]
 gi|31793826|ref|NP_856319.1| ArsR family transcriptional regulator [Mycobacterium bovis
          AF2122/97]
 gi|121638529|ref|YP_978753.1| ArsR family transcriptional regulator [Mycobacterium bovis BCG
          str. Pasteur 1173P2]
 gi|148662481|ref|YP_001284004.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra]
 gi|148823833|ref|YP_001288587.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          F11]
 gi|215404606|ref|ZP_03416787.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          02_1987]
 gi|215412436|ref|ZP_03421182.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          94_M4241A]
 gi|215431597|ref|ZP_03429516.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          EAS054]
 gi|215446899|ref|ZP_03433651.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          T85]
 gi|218754381|ref|ZP_03533177.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          GM 1503]
 gi|219558648|ref|ZP_03537724.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          T17]
 gi|224991023|ref|YP_002645710.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253798276|ref|YP_003031277.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis KZN 1435]
 gi|254232752|ref|ZP_04926079.1| hypothetical protein TBCG_02582 [Mycobacterium tuberculosis C]
 gi|254365306|ref|ZP_04981351.1| hypothetical transcriptional regulatory protein (probably
          arsR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|254551694|ref|ZP_05142141.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis '98-R604 INH-RIF-EM']
 gi|260187661|ref|ZP_05765135.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis CPHL_A]
 gi|260201771|ref|ZP_05769262.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis T46]
 gi|260205968|ref|ZP_05773459.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis K85]
 gi|289444182|ref|ZP_06433926.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis T46]
 gi|289448297|ref|ZP_06438041.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis CPHL_A]
 gi|289553571|ref|ZP_06442781.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis KZN 605]
 gi|289570815|ref|ZP_06451042.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis T17]
 gi|289575355|ref|ZP_06455582.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis K85]
 gi|289746443|ref|ZP_06505821.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289754759|ref|ZP_06514137.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054]
 gi|289758770|ref|ZP_06518148.1| transcription regulator ArsR [Mycobacterium tuberculosis T85]
 gi|289762814|ref|ZP_06522192.1| transcriptional regulatory protein (probably arsR-family)
          [Mycobacterium tuberculosis GM 1503]
 gi|294993083|ref|ZP_06798774.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis 210]
 gi|297635252|ref|ZP_06953032.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis KZN 4207]
 gi|297732247|ref|ZP_06961365.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis KZN R506]
 gi|298526116|ref|ZP_07013525.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306776919|ref|ZP_07415256.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu001]
 gi|306780823|ref|ZP_07419160.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu002]
 gi|306785447|ref|ZP_07423769.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu003]
 gi|306790046|ref|ZP_07428368.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu004]
 gi|306794128|ref|ZP_07432430.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu005]
 gi|306798544|ref|ZP_07436846.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu006]
 gi|306804404|ref|ZP_07441072.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu008]
 gi|306807555|ref|ZP_07444223.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu007]
 gi|306968694|ref|ZP_07481355.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu009]
 gi|306973033|ref|ZP_07485694.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu010]
 gi|307080743|ref|ZP_07489913.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu011]
 gi|307085332|ref|ZP_07494445.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu012]
 gi|313659580|ref|ZP_07816460.1| transcriptional regulator, arsR-family protein [Mycobacterium
          tuberculosis KZN V2475]
 gi|1550681|emb|CAB02346.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ARSR-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|13882468|gb|AAK47032.1| transcriptional regulator, ArsR family [Mycobacterium
          tuberculosis CDC1551]
 gi|31619420|emb|CAD94858.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY
          ARSR-FAMILY) [Mycobacterium bovis AF2122/97]
 gi|121494177|emb|CAL72655.1| Possible transcriptional regulatory protein (probably
          arsR-family) [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|124601811|gb|EAY60821.1| hypothetical protein TBCG_02582 [Mycobacterium tuberculosis C]
 gi|134150819|gb|EBA42864.1| hypothetical transcriptional regulatory protein (probably
          arsR-family) [Mycobacterium tuberculosis str. Haarlem]
 gi|148506633|gb|ABQ74442.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148722360|gb|ABR06985.1| hypothetical transcriptional regulatory protein, arsR-family
          [Mycobacterium tuberculosis F11]
 gi|224774136|dbj|BAH26942.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253319779|gb|ACT24382.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis KZN 1435]
 gi|289417101|gb|EFD14341.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis T46]
 gi|289421255|gb|EFD18456.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis CPHL_A]
 gi|289438203|gb|EFD20696.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis KZN 605]
 gi|289539786|gb|EFD44364.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis K85]
 gi|289544569|gb|EFD48217.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis T17]
 gi|289686971|gb|EFD54459.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289695346|gb|EFD62775.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054]
 gi|289710320|gb|EFD74336.1| transcriptional regulatory protein (probably arsR-family)
          [Mycobacterium tuberculosis GM 1503]
 gi|289714334|gb|EFD78346.1| transcription regulator ArsR [Mycobacterium tuberculosis T85]
 gi|298495910|gb|EFI31204.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308214693|gb|EFO74092.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu001]
 gi|308326328|gb|EFP15179.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu002]
 gi|308329871|gb|EFP18722.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu003]
 gi|308333488|gb|EFP22339.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu004]
 gi|308337522|gb|EFP26373.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu005]
 gi|308341189|gb|EFP30040.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu006]
 gi|308346049|gb|EFP34900.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu007]
 gi|308348998|gb|EFP37849.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu008]
 gi|308353723|gb|EFP42574.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu009]
 gi|308357566|gb|EFP46417.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu010]
 gi|308361510|gb|EFP50361.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu011]
 gi|308365123|gb|EFP53974.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis SUMu012]
 gi|323718754|gb|EGB27913.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326904253|gb|EGE51186.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis W-148]
 gi|328458048|gb|AEB03471.1| transcriptional regulator, arsR-family [Mycobacterium
          tuberculosis KZN 4207]
          Length = 119

 Score = 33.8 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          ++++ Y            Q+A A  +S+  +   L  L KAG+V + R
Sbjct: 45 VKIMSYLFSSPAGEQVSGQLAAALSLSDGTVSHHLAQLRKAGLVISDR 92


>gi|331091309|ref|ZP_08340149.1| hypothetical protein HMPREF9477_00792 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404470|gb|EGG84014.1| hypothetical protein HMPREF9477_00792 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 122

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           D    +  +A    ++   + K L  L + G+V + R
Sbjct: 31 GDKLPSVRDLALEAAVNPNTMQKALSELERQGLVYSQR 68


>gi|302528441|ref|ZP_07280783.1| predicted protein [Streptomyces sp. AA4]
 gi|302437336|gb|EFL09152.1| predicted protein [Streptomyces sp. AA4]
          Length = 239

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R  M  A+ +     + ++A A  I+     + +  L  AG V  V+ GR   VRL  P 
Sbjct: 26 RATMCLALLDGRAWTVGELAAAARIAVSTASEHVTRLADAGFVARVKQGRHAYVRLANP- 84

Query: 71 DQITILDVVKAT 82
              + ++++  
Sbjct: 85 ---RVAELIEHL 93


>gi|294851132|ref|ZP_06791805.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294819721|gb|EFG36720.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 259

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           M  A        I ++AE   +S+  + +    LV  GI+++ RG  
Sbjct: 55  MSLA-PGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGAG 100


>gi|317132646|ref|YP_004091960.1| hypothetical protein Ethha_1702 [Ethanoligenens harbinense
          YUAN-3]
 gi|315470625|gb|ADU27229.1| hypothetical protein Ethha_1702 [Ethanoligenens harbinense
          YUAN-3]
          Length = 62

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 25 NRISQIAEACCISELFLFKILQP----LVKAGIVETVRGR 60
            + ++AE   +S+ + +KI+      L + G + TV GR
Sbjct: 1  MTVGEVAEELGVSKSYAYKIVHQLNDELKRMGYL-TVSGR 39


>gi|290956868|ref|YP_003488050.1| ArsR family transcriptional regulator [Streptomyces scabiei
          87.22]
 gi|260646394|emb|CBG69490.1| putative ArsR family transcriptional regulator [Streptomyces
          scabiei 87.22]
          Length = 121

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +R+    A H      +  I++   +S+  +   L+ L +AG++ + R
Sbjct: 48 LRLFSAVASHEGGEACVCDISD-VGVSQPTVSHHLKKLREAGLLSSER 94


>gi|258624591|ref|ZP_05719529.1| Glycerol-3-phosphate regulon repressor [Vibrio mimicus VM603]
 gi|258583138|gb|EEW07949.1| Glycerol-3-phosphate regulon repressor [Vibrio mimicus VM603]
          Length = 255

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
          +L Y           + ++E   +S   + K +  L   G+V   R   GG+ L  P D 
Sbjct: 13 ILEYL-QQTHGVLSSALLSERFDVSVQTIRKDMNDLSDKGMV---RRVHGGISLPSPNDN 68

Query: 73 ITI 75
          ++ 
Sbjct: 69 LSF 71


>gi|256374625|ref|YP_003098285.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255918928|gb|ACU34439.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
          43827]
          Length = 153

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           A+  D P    ++AE   +S   +  ++  L +AG V  VR
Sbjct: 48 LALAGDVPVTAGRMAELSGLSTGAVTGVIDRLERAGYVRRVR 89


>gi|256378220|ref|YP_003101880.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255922523|gb|ACU38034.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
          43827]
          Length = 166

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5  KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
            ++Y  +VL + +   +    +SQ+A++  ++   L +I+  L K G + 
Sbjct: 43 SHSEY--QVLWWLSTSTEKVLHMSQLADSAGVTASHLSRIVARLEKRGWIT 91


>gi|255505510|ref|ZP_05346554.3| putative transcriptional regulator [Bryantella formatexigens DSM
          14469]
 gi|255267318|gb|EET60523.1| putative transcriptional regulator [Bryantella formatexigens DSM
          14469]
          Length = 327

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGV 64
                  ++AE   +S   + + +  L +AGI + T +G  GG+
Sbjct: 30 QKESVTAPELAEQFEVSRRTISRDIDSLCRAGIPIVTKQGINGGI 74


>gi|217963597|ref|YP_002349275.1| GntR family transcriptional regulator [Listeria monocytogenes
          HCC23]
 gi|217332867|gb|ACK38661.1| transcriptional regulator, GntR family [Listeria monocytogenes
          HCC23]
 gi|307571827|emb|CAR85006.1| transcriptional regulator, GntR family [Listeria monocytogenes
          L99]
          Length = 131

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|148251868|ref|YP_001236453.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146404041|gb|ABQ32547.1| putative transcriptional regulator with a cAMP-binding domain-like,
           Crp/Fnr family [Bradyrhizobium sp. BTAi1]
          Length = 253

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           P    Q+A    +   ++ +++Q     GI++T RG 
Sbjct: 177 PLTHEQLATLLGVGRSYVSRVVQTFRAEGILDTRRGA 213


>gi|145223761|ref|YP_001134439.1| regulatory protein, IclR [Mycobacterium gilvum PYR-GCK]
 gi|145216247|gb|ABP45651.1| transcriptional regulator, IclR family [Mycobacterium gilvum
          PYR-GCK]
          Length = 264

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          LM           +++++    +    + ++L+ LV  G V  +  RR    L      I
Sbjct: 28 LMELIGRAGGECSLTELSAESPLPPPTIHRLLRTLVGLGYVRQLPNRR--YALG--PRLI 83

Query: 74 TILDV 78
           + +V
Sbjct: 84 RLGEV 88


>gi|238026671|ref|YP_002910902.1| IclR family regulatory protein [Burkholderia glumae BGR1]
 gi|119029701|gb|ABL59968.1| IclR family regulatory protein [Burkholderia glumae BGR1]
 gi|237875865|gb|ACR28198.1| IclR family regulatory protein [Burkholderia glumae BGR1]
          Length = 275

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 27 GLAVLRRIAA-ADAPVSNRELTELTGIPKPTVSRITATLVSAGFL 70


>gi|119964297|ref|YP_949438.1| MarR family transcriptional regulator [Arthrobacter aurescens
          TC1]
 gi|119951156|gb|ABM10067.1| putative transcriptional regulator, MarR family [Arthrobacter
          aurescens TC1]
          Length = 159

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 2  HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           L+   DY +  +   +        +S++A     S   L  ++  L K G VE
Sbjct: 38 KLSLF-DYNVLAM--LSETEGRYLPMSELAARTSASLSRLSHVVTKLQKRGWVE 88


>gi|6007837|gb|AAF01064.1|AF189258_3 transcriptional regulator [Streptomyces venezuelae ATCC 10712]
          Length = 507

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 19 IHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG--GVRLCRPA 70
          +H          +A+   +S   + +    LV  G +E  RG     G  L  PA
Sbjct: 25 LHPGTRLPSSRALADDLDVSRSVVVEAYGQLVAEGYLEATRGAGTRVGPHLAEPA 79


>gi|90962609|ref|YP_536525.1| ArsR family transcriptional regulator [Lactobacillus salivarius
          UCC118]
 gi|90821803|gb|ABE00442.1| Transcriptional regulator, ArsR family [Lactobacillus salivarius
          UCC118]
          Length = 116

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 6  RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64
           T Y I  L+Y     +    +S+I     +S+  +   L+ L + G+V   R G+R   
Sbjct: 39 YTRYKILYLLY-----ERELSVSEITSEIGVSQSAISHQLKLLRQTGLVSGRRDGQRILY 93

Query: 65 RLC 67
           L 
Sbjct: 94 SLA 96


>gi|328544359|ref|YP_004304468.1| ArsR family transcriptional regulator [polymorphum gilvum
          SL003B-26A1]
 gi|326414101|gb|ADZ71164.1| ArsR family transcriptional regulator [Polymorphum gilvum
          SL003B-26A1]
          Length = 118

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L+      +    + ++AE   +    + + L  L   G+V T R
Sbjct: 26 LLLLCHMAERECSVGELAERTGMRMPTVSQQLSLLRAQGLVNTRR 70


>gi|295106713|emb|CBL04256.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 157

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D    +  +A    I+   + K    LV  G +E+ RGR 
Sbjct: 34 GDQLPTVRGLASEISINYNTVNKAYLSLVSDGYLESTRGRG 74


>gi|317053107|ref|YP_004119461.1| transcriptional regulator, ArsR family [Pantoea sp. At-9b]
 gi|316953434|gb|ADU72905.1| transcriptional regulator, ArsR family [Pantoea sp. At-9b]
          Length = 94

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          + +    + H   P  ++++     I++ +L + L  L KA ++   R
Sbjct: 24 LHIAFTLSQH---PATVAELEATTRIAQPYLSQHLASLRKAQLLVATR 68


>gi|260847174|ref|YP_003224952.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O103:H2 str. 12009]
 gi|257762321|dbj|BAI33818.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O103:H2 str. 12009]
          Length = 304

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|255016967|ref|ZP_05289093.1| hypothetical protein LmonF_02478 [Listeria monocytogenes FSL
          F2-515]
          Length = 91

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 36 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKG 78


>gi|228476965|ref|ZP_04061603.1| transcriptional regulator, GntR family [Streptococcus salivarius
          SK126]
 gi|228250984|gb|EEK10155.1| transcriptional regulator, GntR family [Streptococcus salivarius
          SK126]
          Length = 125

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
                + + A+   ++   + +  Q L K G+V + R
Sbjct: 31 GQQLLPVREFAQEAGVNPNTVQRAFQELEKEGLVYSAR 68


>gi|205373103|ref|ZP_03225907.1| manganese transport transcriptional regulator [Bacillus
          coahuilensis m4-4]
          Length = 141

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRG 59
          +Y  I N    R+S IAE+  +    + K++Q L K   +  E  RG
Sbjct: 13 IYLLIENKGYARVSDIAESLSVHPSSVTKMVQKLDKDNYLVYERYRG 59


>gi|254438114|ref|ZP_05051608.1| UbiC transcription regulator-associated domain protein
          [Octadecabacter antarcticus 307]
 gi|198253560|gb|EDY77874.1| UbiC transcription regulator-associated domain protein
          [Octadecabacter antarcticus 307]
          Length = 250

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            A  +D      + AE   IS + + K +  LV  G+VE  +G  
Sbjct: 36 DLA-PDDQLPPEREFAEIAQISRVTVRKAVSLLVADGLVEQRQGAG 80


>gi|167750177|ref|ZP_02422304.1| hypothetical protein EUBSIR_01146 [Eubacterium siraeum DSM 15702]
 gi|167656920|gb|EDS01050.1| hypothetical protein EUBSIR_01146 [Eubacterium siraeum DSM 15702]
          Length = 249

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
            ++  A++      I++++E   +S   + + L  L   G +  VRG
Sbjct: 7  HSMIIKAVNERASVTIAELSEILNVSASTVKRDLIILANEGKIIKVRG 54


>gi|148380212|ref|YP_001254753.1| MarR family regulatory protein [Clostridium botulinum A str. ATCC
          3502]
 gi|148289696|emb|CAL83801.1| MarR family regulatory protein [Clostridium botulinum A str. ATCC
          3502]
          Length = 141

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T   IR+L Y   + +    I  +A+    S     + ++ L+K G+V   R
Sbjct: 30 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 79


>gi|146337420|ref|YP_001202468.1| hypothetical protein BRADO0258 [Bradyrhizobium sp. ORS278]
 gi|146190226|emb|CAL74218.1| conserved hypothetical protein; putative transcriptional regulator
           with a cAMP-binding domain-like, Crp/Fnr family
           [Bradyrhizobium sp. ORS278]
          Length = 253

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           P    Q+A    +   ++ +++Q     GI++T RG 
Sbjct: 177 PLTHEQLATLLGVGRSYVSRVVQTFRAEGILDTRRGA 213


>gi|108804723|ref|YP_644660.1| GntR family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108765966|gb|ABG04848.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 263

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRR-------GGVRLCRPADQITILDVVKA 81
          +A    +S   L + LQ LV+ G++  V+GR        G + L +    +T+ +++ A
Sbjct: 39 LAAEFGVSRGTLRQALQSLVEEGLLTQVQGRGTFVSAPSGDLPLAQRL--VTMYEILAA 95


>gi|46580961|ref|YP_011769.1| birA bifunctional protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46450381|gb|AAS97029.1| birA bifunctional protein [Desulfovibrio vulgaris str.
          Hildenborough]
          Length = 330

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRGGVRLCR 68
          RVL       D      +++    +S   + K ++ L  AG V    T RG     RL R
Sbjct: 12 RVLERL-FEADGWCSGEELSRELGVSRAAVGKHVRALRAAGYVIEAVTRRG----YRLDR 66

Query: 69 PADQITILDVVK--ATE 83
                  +V++  ATE
Sbjct: 67 TTAPFEAAEVLRGLATE 83


>gi|85703925|ref|ZP_01035028.1| Transcriptional Regulator, GntR family protein [Roseovarius sp.
          217]
 gi|85671245|gb|EAQ26103.1| Transcriptional Regulator, GntR family protein [Roseovarius sp.
          217]
          Length = 244

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 21 NDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
           D P    ++IA+   +S   + K +  LV  G++E  +G   G  L RP+  +T+
Sbjct: 34 PDEPIPSEARIAKEYAVSVGTVRKAVDGLVAEGLLERRQGS--GTYLRRPSFDVTL 87


>gi|170021682|ref|YP_001726636.1| GntR family transcriptional regulator [Escherichia coli ATCC
          8739]
 gi|188492107|ref|ZP_02999377.1| transcriptional regulator, GntR family [Escherichia coli 53638]
 gi|169756610|gb|ACA79309.1| transcriptional regulator, GntR family [Escherichia coli ATCC
          8739]
 gi|188487306|gb|EDU62409.1| transcriptional regulator, GntR family [Escherichia coli 53638]
          Length = 304

 Score = 33.8 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|308178697|ref|YP_003918103.1| ArsR family transcriptional regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746160|emb|CBT77132.1| putative ArsR-family transcriptional regulator [Arthrobacter
           arilaitensis Re117]
          Length = 122

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R+L+       YP   +++A+A  +S   +   L  L   GIV     GR+    +  P 
Sbjct: 25  RILLSLLHEPGYP---AELAQALGLSRANVSNHLTCLRGCGIVVAKMEGRKTRYEITDPH 81

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
               +  +V  T        C  S   DC     
Sbjct: 82  LTTALSALVDVTLAVDDQVPCLDSSCPDCATSAD 115


>gi|297528762|ref|YP_003670037.1| ArsR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252014|gb|ADI25460.1| transcriptional regulator, ArsR family [Geobacillus sp. C56-T3]
          Length = 106

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          +L   A   D    I+ I+++  IS   + K L+ L +AG+V   + GR    RL    
Sbjct: 18 MLQLLA---DNELSIAAISKSFPISRTAVNKHLRVLSEAGLVSCRKTGRETRYRLEPEP 73


>gi|239933954|ref|ZP_04690907.1| DeoR family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 332

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              +A    ++   + + +  L   G  + TV+G  GG RL
Sbjct: 25 SGEALAGRLEVTSRTVRRDIDRLRGLGYPITTVKGPDGGYRL 66


>gi|257053108|ref|YP_003130941.1| hypothetical protein Huta_2040 [Halorhabdus utahensis DSM 12940]
 gi|256691871|gb|ACV12208.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 310

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 15 MYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          +  A+    D  + ISQ+A     SE +L + +  L + G+V T R
Sbjct: 5  IELAVLATVDRGDTISQLATKLDHSESYLSRAVGDLAQNGLVYTER 50


>gi|254380700|ref|ZP_04996066.1| AraC-family transcriptional regulator [Streptomyces sp. Mg1]
 gi|194339611|gb|EDX20577.1| AraC-family transcriptional regulator [Streptomyces sp. Mg1]
          Length = 334

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 10  GIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQP 47
            +RV+ +   + D P   +  IA A  IS  +L ++ Q 
Sbjct: 218 ALRVMAFIRDNADDPLLDVPAIAAAHHISVSYLHRVFQQ 256


>gi|239827288|ref|YP_002949912.1| IclR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239807581|gb|ACS24646.1| transcriptional regulator, IclR family [Geobacillus sp. WCH70]
          Length = 256

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           + + +           +++IA+   I++  +++IL  L + G +E
Sbjct: 13 ALHI-IDIVSSEKDGLGVTEIAKQMDINKSSVYRILSTLAQYGYIE 57


>gi|241206081|ref|YP_002977177.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859971|gb|ACS57638.1| ROK family protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 401

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRR 61
          RV++  A+  +     + +A A  +++  +  I++ L + G+V +     RGR 
Sbjct: 24 RVMID-ALRINGALSRADLARATRLTKQTVSNIIEELERDGLVSSQEAVRRGRG 76


>gi|163797409|ref|ZP_02191361.1| putative GntR-family transcriptional regulator [alpha
          proteobacterium BAL199]
 gi|159177328|gb|EDP61885.1| putative GntR-family transcriptional regulator [alpha
          proteobacterium BAL199]
          Length = 241

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D    + Q+     +S + + + +Q L + G+V   RGR 
Sbjct: 30 APGDLLPSLEQLMAEFDVSRVTVRQAIQILSQEGLVTPQRGRG 72


>gi|153932778|ref|YP_001384516.1| MarR family transcriptional regulator [Clostridium botulinum A
          str. ATCC 19397]
 gi|153936662|ref|YP_001388032.1| MarR family transcriptional regulator [Clostridium botulinum A
          str. Hall]
 gi|152928822|gb|ABS34322.1| transcriptional regulator, MarR family [Clostridium botulinum A
          str. ATCC 19397]
 gi|152932576|gb|ABS38075.1| transcriptional regulator, MarR family [Clostridium botulinum A
          str. Hall]
          Length = 142

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T   IR+L Y   + +    I  +A+    S     + ++ L+K G+V   R
Sbjct: 31 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 80


>gi|126728893|ref|ZP_01744708.1| transcriptional regulator, AsnC family protein [Sagittula
          stellata E-37]
 gi|126710823|gb|EBA09874.1| transcriptional regulator, AsnC family protein [Sagittula
          stellata E-37]
          Length = 151

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          R+L +     D  +  +++A+   ++   L + L+ L + G+++ VRG 
Sbjct: 8  RILRH--YQADPDSPAAELADRAGVTPSTLARRLERLRETGVLKGVRGV 54


>gi|24380188|ref|NP_722143.1| transcriptional repressor CodY [Streptococcus mutans UA159]
 gi|290579836|ref|YP_003484228.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|48474284|sp|P59388|CODY_STRMU RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|24378192|gb|AAN59449.1|AE015009_9 putative transcriptional regulator [Streptococcus mutans UA159]
 gi|254996735|dbj|BAH87336.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 261

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|109898422|ref|YP_661677.1| ArsR family transcriptional regulator [Pseudoalteromonas
          atlantica T6c]
 gi|109700703|gb|ABG40623.1| transcriptional regulator, ArsR family [Pseudoalteromonas
          atlantica T6c]
          Length = 100

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            LM   + N+    +S + +   I +  L + L  L +  +V T R
Sbjct: 24 HRLMLLCLLNNGEMSVSSLNQQVAIPQSSLSQHLAALRREKLVVTRR 70


>gi|110635305|ref|YP_675513.1| GntR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286289|gb|ABG64348.1| transcriptional regulator, GntR family [Chelativorans sp. BNC1]
          Length = 242

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           H +     +++ +   +S   + K L+ L K G+VE  R   
Sbjct: 30 AHGERLPSEAELVKQFNVSRQTIHKALRELAKFGLVERNRRAG 72


>gi|69250562|ref|ZP_00605167.1| conserved hypothetical protein [Enterococcus faecium DO]
 gi|68193929|gb|EAN08502.1| conserved hypothetical protein [Enterococcus faecium DO]
          Length = 100

 Score = 33.8 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L
Sbjct: 10 ILIQLQSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFL 60


>gi|327489053|gb|EGF20848.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1058]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|327458860|gb|EGF05208.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1057]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|322387455|ref|ZP_08061065.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus infantis ATCC 700779]
 gi|321141984|gb|EFX37479.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus infantis ATCC 700779]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|306845494|ref|ZP_07478064.1| GntR domain-containing protein [Brucella sp. BO1]
 gi|306274105|gb|EFM55930.1| GntR domain-containing protein [Brucella sp. BO1]
          Length = 270

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|294811646|ref|ZP_06770289.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294324245|gb|EFG05888.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 475

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
           +       + E   +S + + + L  L   G+V T  G  G  R  RP
Sbjct: 24 GEKLPSSRALVERHRVSPVTVSRALAQLTAEGLVVTRPGA-GAYR-ARP 70


>gi|288904302|ref|YP_003429523.1| transcriptional regulator, MarR family [Streptococcus
          gallolyticus UCN34]
 gi|306830332|ref|ZP_07463502.1| adc operon repressor AdcR [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325977298|ref|YP_004287014.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|288731027|emb|CBI12571.1| putative transcriptional regulator, MarR family [Streptococcus
          gallolyticus UCN34]
 gi|304427357|gb|EFM30459.1| adc operon repressor AdcR [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325177226|emb|CBZ47270.1| Uncharacterized HTH-type transcriptional regulator yhjH
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
          Length = 148

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  +         S +A+   IS+  + K ++ LV  G++ +V+
Sbjct: 41 HILMLLSQ---ERLTNSDLAKRLNISQAAVTKAIKYLVSQGMLASVK 84


>gi|288932075|ref|YP_003436135.1| AsnC family transcriptional regulator [Ferroglobus placidus DSM
          10642]
 gi|288894323|gb|ADC65860.1| putative transcriptional regulator, AsnC family [Ferroglobus
          placidus DSM 10642]
          Length = 168

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          A+  +     S++A++  IS   L K ++ LVK G++E
Sbjct: 12 ALMENSRLSFSELAKSLGISRPTLKKRVEELVKNGVIE 49


>gi|254706272|ref|ZP_05168100.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          M163/99/10]
 gi|254711435|ref|ZP_05173246.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          B2/94]
 gi|256029935|ref|ZP_05443549.1| Bacterial regulatory protein, GntR family [Brucella pinnipedialis
          M292/94/1]
 gi|261313718|ref|ZP_05952915.1| GntR domain-containing protein [Brucella pinnipedialis
          M163/99/10]
 gi|261319040|ref|ZP_05958237.1| GntR domain-containing protein [Brucella pinnipedialis B2/94]
 gi|265986956|ref|ZP_06099513.1| GntR domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|261298263|gb|EEY01760.1| GntR domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261302744|gb|EEY06241.1| GntR domain-containing protein [Brucella pinnipedialis
          M163/99/10]
 gi|264659153|gb|EEZ29414.1| GntR domain-containing protein [Brucella pinnipedialis M292/94/1]
          Length = 270

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|271972133|ref|YP_003344763.1| putative transcriptional regulator, GntR family
          [Streptosporangium roseum DSM 43021]
 gi|270513743|gb|ACZ92020.1| putative transcriptional regulator, GntR family
          [Streptosporangium roseum DSM 43021]
          Length = 259

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 13/41 (31%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                +  +A    +S     K +  L   G++ T  G  
Sbjct: 28 GGKLPAVRDLAARYGVSRNTAAKAVALLKTDGLITTRYGSG 68


>gi|229138331|ref|ZP_04266925.1| Biotin--[acetyl-CoA-carboxylase] synthetase [Bacillus cereus
          BDRD-ST26]
 gi|228645096|gb|EEL01334.1| Biotin--[acetyl-CoA-carboxylase] synthetase [Bacillus cereus
          BDRD-ST26]
          Length = 317

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
          +        I++    S   ++K ++ L   G  +E VR    G R+    D++T  ++
Sbjct: 8  DGEFVSGQTISDKLGCSRTAVWKHMEDLRNEGYELEAVRRL--GYRIASKPDKVTANEI 64


>gi|227820409|ref|YP_002824380.1| transcriptional regulator protein, ArsR family [Sinorhizobium
          fredii NGR234]
 gi|227339408|gb|ACP23627.1| probable transcriptional regulator protein, ArsR family
          [Sinorhizobium fredii NGR234]
          Length = 118

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 3  LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T   ++++    +          +AE   +S   +   L+ L +AG++   R
Sbjct: 13 LSQETR--LKIIRMLVVAGADGVSAGVMAENLGVSPSNISFHLKELERAGLITQQR 66


>gi|170761728|ref|YP_001787640.1| MarR family transcriptional regulator [Clostridium botulinum A3
          str. Loch Maree]
 gi|169408717|gb|ACA57128.1| transcriptional regulator, MarR family [Clostridium botulinum A3
          str. Loch Maree]
          Length = 142

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          T   IR+L Y   + +    I  +A+    S     + ++ L+K G+V   R
Sbjct: 31 THQAIRLLQYIDKNKE--TTIGDLAKHINTSSNTASEHIKRLIKKGLVTKQR 80


>gi|169631705|ref|YP_001705354.1| IclR family transcriptional regulator [Mycobacterium abscessus
          ATCC 19977]
 gi|169243672|emb|CAM64700.1| Putative transcriptional regulator, IclR family [Mycobacterium
          abscessus]
          Length = 286

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +R++   A     P  +S+IA +  IS      ++  L  AG V
Sbjct: 12 VRIVEMLAAAM-QPKTVSEIAASTGISRATATAVVNELEAAGWV 54


>gi|182417717|ref|ZP_02949035.1| transcriptional regulator, DeoR family [Clostridium butyricum
          5521]
 gi|237668810|ref|ZP_04528794.1| transcriptional regulator, DeoR family [Clostridium butyricum E4
          str. BoNT E BL5262]
 gi|182378441|gb|EDT75972.1| transcriptional regulator, DeoR family [Clostridium butyricum
          5521]
 gi|237657158|gb|EEP54714.1| transcriptional regulator, DeoR family [Clostridium butyricum E4
          str. BoNT E BL5262]
          Length = 254

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
          ++  D    +  ++E   +SE  + K LQ L K  +++  R   G +++ R
Sbjct: 13 SLEQDGKIFVKDLSERFNVSESMIRKDLQALEKQNMLK--RTYGGAIQITR 61


>gi|116249450|ref|YP_765291.1| putative nodulation protein NolR [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115254100|emb|CAK12497.1| putative nodulation like protein NolR [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 117

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          + +L   A   +    +S +A+   +S+    + L  L +  +V+T R  +
Sbjct: 32 LHILHLLA---EGEMSVSVLADEVGLSQSSTSQHLAILREQELVQTRRAAQ 79


>gi|17989411|ref|NP_542044.1| pyruvate dehydrogenase complex repressor [Brucella melitensis bv.
          1 str. 16M]
 gi|225686032|ref|YP_002734004.1| GntR domain-containing protein [Brucella melitensis ATCC 23457]
 gi|256043096|ref|ZP_05446040.1| GntR domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111918|ref|ZP_05452874.1| GntR domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|256262844|ref|ZP_05465376.1| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
 gi|260564323|ref|ZP_05834808.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989531|ref|ZP_06102088.1| GntR domain-containing protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|265993367|ref|ZP_06105924.1| GntR domain-containing protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|17985287|gb|AAL54308.1| pyruvate dehydrogenase complex repressor [Brucella melitensis bv.
          1 str. 16M]
 gi|225642137|gb|ACO02050.1| GntR domain protein [Brucella melitensis ATCC 23457]
 gi|260151966|gb|EEW87059.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764237|gb|EEZ10269.1| GntR domain-containing protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|263000200|gb|EEZ12890.1| GntR domain-containing protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|263092671|gb|EEZ16887.1| bacterial regulatory protein [Brucella melitensis bv. 2 str.
          63/9]
          Length = 270

 Score = 33.4 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|319789943|ref|YP_004151576.1| iron (metal) dependent repressor, DtxR family [Thermovibrio
           ammonificans HB-1]
 gi|317114445|gb|ADU96935.1| iron (metal) dependent repressor, DtxR family [Thermovibrio
           ammonificans HB-1]
          Length = 145

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 15  MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---------ETVRGRRGGVR 65
           +Y         R+ +IA+A  +    + ++L+ L K G V          T +GR    +
Sbjct: 18  IYLLESQKRVARVKEIAQARGVKMPTVSEVLKRLSKKGYVLYESYGYVRTTKKGREYAQK 77

Query: 66  LCRPADQ-ITIL-DVVKATEESFFVAECFASHK 96
           L R     IT L DV+K  +E      C   H 
Sbjct: 78  LYRKHRALITFLKDVLKLPKEVAEREGCLMEHH 110


>gi|295394383|ref|ZP_06804607.1| probable transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
 gi|294972735|gb|EFG48586.1| probable transcriptional regulator [Brevibacterium mcbrellneri
          ATCC 49030]
          Length = 326

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
                ++A    +S   + + ++ L  AG+ V T +GR G + L R A 
Sbjct: 25 ERMTSKELARRFEVSPRTILRDVEALSAAGVPVFTEQGRNGAIVLDRRAR 74


>gi|294011249|ref|YP_003544709.1| MarR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292674579|dbj|BAI96097.1| MarR-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 140

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           LM        P+ +  +AEA  +S+  + + L  L   G +   R
Sbjct: 50 ALMLTVYIGAGPHTVRGLAEALNVSKPVITRALNKLSALGYLRRER 95


>gi|291443567|ref|ZP_06582957.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|291346514|gb|EFE73418.1| GntR-family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 233

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD--V 78
               R  ++A+   +S   + ++++ L    +VE+ R         RP +   + D  V
Sbjct: 27 PGSVLRTDELAQRFDVSRTVIREVIRVLESMHLVESRRRVG---VTVRPTETWNVYDPRV 83

Query: 79 VK 80
          ++
Sbjct: 84 IR 85


>gi|239943418|ref|ZP_04695355.1| AraC family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989871|ref|ZP_04710535.1| AraC family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291446887|ref|ZP_06586277.1| hypothetical protein SSGG_04105 [Streptomyces roseosporus NRRL
           15998]
 gi|291349834|gb|EFE76738.1| hypothetical protein SSGG_04105 [Streptomyces roseosporus NRRL
           15998]
          Length = 319

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 10  GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG---IVETVRGRRGGVRL 66
            +R +        +P   +++A    +S   L K    LV  G    +   R       L
Sbjct: 209 ALRAM---HEDPAHPWTTTELAGRAGVSRTTLAKRFTELVGDGPVAYLTEWRMTLAADLL 265

Query: 67  CRPADQITILDVVKAT 82
            RP  ++T+  V +  
Sbjct: 266 TRP--ELTVAAVARRV 279


>gi|229113566|ref|ZP_04243014.1| Transcriptional regulator, ArsR [Bacillus cereus Rock1-15]
 gi|228669865|gb|EEL25260.1| Transcriptional regulator, ArsR [Bacillus cereus Rock1-15]
          Length = 92

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
              +S++++   ISE  + + L+ LV+  IV++ R    G RL    +   I+++V+  
Sbjct: 32 GSLSVSELSKLTQISEAVILQHLRKLVQGNIVKSERK---GKRLYCRLEDNKIVEIVRVL 88


>gi|260881544|ref|ZP_05404689.2| transcriptional regulator, GntR family [Mitsuokella multacida DSM
          20544]
 gi|260848737|gb|EEX68744.1| transcriptional regulator, GntR family [Mitsuokella multacida DSM
          20544]
          Length = 237

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +      ++ E   +S + + K +  LVK G+V   RG  
Sbjct: 23 GEQLALEREMCEQYGVSRITIKKAVDQLVKEGLVVKRRGSG 63


>gi|289937509|ref|YP_003482111.1| transcriptional regulator, IclR family [Natrialba magadii ATCC
          43099]
 gi|289533200|gb|ADD07549.1| transcriptional regulator, IclR family [Natrialba magadii ATCC
          43099]
          Length = 258

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR--------- 61
          +R++      N     +S++A    +S+  + K L  L +   V    G+          
Sbjct: 20 LRIVEELKHQNGA--TVSELATTVGVSKGTVHKHLATLREHDYVVNDNGKYRIGLHFLDI 77

Query: 62 GGVRL 66
          GG  L
Sbjct: 78 GGYAL 82


>gi|220912600|ref|YP_002487909.1| transcriptional regulator [Arthrobacter chlorophenolicus A6]
 gi|219859478|gb|ACL39820.1| putative transcriptional regulator [Arthrobacter chlorophenolicus
          A6]
          Length = 271

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
          A+    P   +++ +    +   + + L  L +AGI+E  R  R G    RPA +  +
Sbjct: 37 AVLEHGPVSAAELGDMLGFTPAAVRRHLDHLSRAGIIEVKRVARAGAGAGRPARRYVL 94


>gi|297195652|ref|ZP_06913050.1| ArsR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197719006|gb|EDY62914.1| ArsR family transcriptional regulator [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 113

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          IRVL       D P  +  +  A  I    L + L  L ++GIV   R
Sbjct: 22 IRVLELL---QDGPMPVRDLLAAIEIEPSSLSQQLAVLRRSGIVRATR 66


>gi|167573095|ref|ZP_02365969.1| transcriptional regulator, ArsR family protein [Burkholderia
          oklahomensis C6786]
          Length = 115

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
          R+LM C +       +S I     I +  L + L  L    +V+T R G+     L    
Sbjct: 32 RLLMMCELAQCGELCVSDIEARLDIHQPTLSQQLAVLRDNALVDTRRDGKNIYYALASQP 91

Query: 71 DQITILDVV 79
            I I+ V+
Sbjct: 92 A-IAIMSVL 99


>gi|125717426|ref|YP_001034559.1| CodY family transcriptional regulator [Streptococcus sanguinis
           SK36]
 gi|323353269|ref|ZP_08087802.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis VMC66]
 gi|166218410|sp|A3CLF4|CODY_STRSV RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|125497343|gb|ABN44009.1| GTP-sensing transcriptional pleiotropic repressor, putative
           [Streptococcus sanguinis SK36]
 gi|322121215|gb|EFX92978.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis VMC66]
 gi|324990755|gb|EGC22691.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK353]
 gi|324993496|gb|EGC25416.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK405]
 gi|324995194|gb|EGC27106.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK678]
 gi|325690287|gb|EGD32291.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK115]
 gi|325693548|gb|EGD35467.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK150]
 gi|325696978|gb|EGD38865.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK160]
 gi|327461768|gb|EGF08099.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1]
 gi|328945673|gb|EGG39824.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1087]
 gi|332360525|gb|EGJ38335.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1056]
 gi|332363356|gb|EGJ41141.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK49]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|159043802|ref|YP_001532596.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911562|gb|ABV92995.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 287

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITI 75
                   R S IA A  +    L   L  L  AG+V + R GR    R    A+   +
Sbjct: 25 LVRRGPSGVRPSDIAAALGLKPNTLSVYLAALQAAGLVASQRAGRAVLYR----AELRRV 80

Query: 76 LDVVKATEESFFVAECFASHKIDC 99
            +V      + V +C       C
Sbjct: 81 GALV-----DYLVDDCCRGRPDLC 99


>gi|116253549|ref|YP_769387.1| ROK family transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115258197|emb|CAK09298.1| putative ROK family transcriptional regulator [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 401

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET----VRGRR 61
          RV++  A+  +     + +A A  +++  +  I++ L + G+V +     RGR 
Sbjct: 24 RVMID-ALRINGALSRADLARATRLTKQTVSNIIEELERDGLVSSQEAVRRGRG 76


>gi|114766315|ref|ZP_01445301.1| transcriptional regulator, GntR family protein [Pelagibaca
          bermudensis HTCC2601]
 gi|114541432|gb|EAU44478.1| transcriptional regulator, GntR family protein [Roseovarius sp.
          HTCC2601]
          Length = 251

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
               D     ++++    ++     + L  L +  +V + RG   GV +        I 
Sbjct: 22 LYRAGDKLPTEAELSSRFGVNRHTARRALADLAERDLVHSRRGA--GVFVKATPLDYPIG 79

Query: 77 DVVK 80
          + V+
Sbjct: 80 ERVR 83


>gi|28869718|ref|NP_792337.1| IclR family transcriptional regulator [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|28852960|gb|AAO56032.1| transcriptional regulator, IclR family [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 279

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 17/80 (21%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE----TVRGRRGGVRL-- 66
          VL       +   R++Q+A+   +S+    ++L+ L+  G+VE    + R      RL  
Sbjct: 25 VLRCLGECGEGGERVTQLAQRVGLSQPTTHRLLRSLMDEGMVEQDLLSKR-----YRLSI 79

Query: 67 ------CRPADQITILDVVK 80
                 R  +   + DVV+
Sbjct: 80 EFFALAARAGNTGNLRDVVR 99


>gi|72162322|ref|YP_289979.1| transcriptional repressor protein [Thermobifida fusca YX]
 gi|71916054|gb|AAZ55956.1| putative transcriptional repressor protein [Thermobifida fusca
          YX]
          Length = 389

 Score = 33.4 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRG-GVRLCRPA 70
          A+        ++IA A  +S   +  I++ L   G+V     +  GRR   V L RP 
Sbjct: 26 ALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVVSVRETSSNGRRARAVTLQRPP 83


>gi|329889027|ref|ZP_08267370.1| bacterial regulatory protein, crp family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328844328|gb|EGF93892.1| bacterial regulatory protein, crp family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 253

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           P     +A+   +S + + + LQ L +AG+V+   GR
Sbjct: 188 PLTQDMLADILGLSAVHINRTLQQLRRAGLVDYRTGR 224


>gi|325568869|ref|ZP_08145162.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325157907|gb|EGC70063.1| transcriptional regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 236

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++AE   +S   + + +Q LV  G +E  + R 
Sbjct: 33 ELAEIYGVSRPTIRQAIQALVNEGYLEKRKRRG 65


>gi|311277470|ref|YP_003939701.1| GntR domain-containing protein [Enterobacter cloacae SCF1]
 gi|308746665|gb|ADO46417.1| GntR domain protein [Enterobacter cloacae SCF1]
          Length = 258

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           Q+A    +S   L + L  LV  G++ + RG  
Sbjct: 35 RQLAALLGVSRNSLREALAKLVSEGLLVSRRGGG 68


>gi|307543892|ref|YP_003896371.1| GntR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307215916|emb|CBV41186.1| transcriptional regulator, GntR family [Halomonas elongata DSM
           2581]
          Length = 249

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 17/84 (20%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-----CRPAD---- 71
            D     +++ E   +S+  + +  + L   G+VET  G  GG  +      R       
Sbjct: 29  GDRLPGEAELMERLGVSKGTVRESTRVLEAQGLVETRTGPGGGAFVHAMSEARAISLLSH 88

Query: 72  -----QITILDVVK---ATEESFF 87
                 I+I D+ +   A E    
Sbjct: 89  YLFFQDISIRDIYQIRLALEPELA 112


>gi|307543808|ref|YP_003896287.1| GntR family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307215832|emb|CBV41102.1| K05799 GntR family transcriptional regulator, transcriptional
          repressor for pyruvate dehydrogenase complex [Halomonas
          elongata DSM 2581]
          Length = 257

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++AE   +S   + + +Q L   G++ + +G  
Sbjct: 38 RELAERFGVSRPSVREAIQKLAARGLLASRQGGG 71


>gi|299138710|ref|ZP_07031888.1| transcriptional regulator, DeoR family [Acidobacterium sp.
           MP5ACTX8]
 gi|298599346|gb|EFI55506.1| transcriptional regulator, DeoR family [Acidobacterium sp.
           MP5ACTX8]
          Length = 266

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 19/122 (15%)

Query: 14  LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR-----LCR 68
           ++   I  +    +S++++   IS + + K L  L   G+++      GG       L  
Sbjct: 24  MLDL-IQRNGRVLVSELSDVFGISRITIRKDLDYLESKGLLQ---RSHGGALPRSSVLAD 79

Query: 69  PA----DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           P     +Q  + +  +  E +  + E     +  C L+ S   T+ + +AL AF   LT 
Sbjct: 80  PPLKAKEQHQLKEKQRIAEAAVKLVE-----EGHCVLLDSGTTTTAIARALTAF-SSLTV 133

Query: 125 YS 126
            +
Sbjct: 134 VT 135


>gi|291442380|ref|ZP_06581770.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
 gi|291345275|gb|EFE72231.1| DeoR-family transcriptional regulator [Streptomyces ghanaensis
          ATCC 14672]
          Length = 339

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              +A    ++   + + +  L   G  + TV+G  GG RL
Sbjct: 32 SGEALAGRLEVTSRTVRRDIDRLRGLGYPITTVKGPDGGYRL 73


>gi|262283762|ref|ZP_06061526.1| repressor protein adcR [Streptococcus sp. 2_1_36FAA]
 gi|262260608|gb|EEY79310.1| repressor protein adcR [Streptococcus sp. 2_1_36FAA]
          Length = 147

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM  A   +     S +A+   +S+  + K ++ L+  G++ET +
Sbjct: 42 HILMLLA---EEMLTNSDLAKKLNVSQAAVTKAVKSLINQGMLETFK 85


>gi|255262810|ref|ZP_05342152.1| DeoR family transcriptional regulator [Thalassiobium sp. R2A62]
 gi|255105145|gb|EET47819.1| DeoR family transcriptional regulator [Thalassiobium sp. R2A62]
          Length = 267

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          L+          R S +AE   +SE  + + ++ L K G+V+ V    GGV L 
Sbjct: 15 LLETLRAQGGSARTSHLAEVLNVSEETIRRTVKALAKTGMVQRV---HGGVYLS 65


>gi|297582737|ref|YP_003698517.1| ROK family protein [Bacillus selenitireducens MLS10]
 gi|297141194|gb|ADH97951.1| ROK family protein [Bacillus selenitireducens MLS10]
          Length = 404

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
          I    P   + I++   ++   +  I+  L+K G+V+   GR G  +  R  
Sbjct: 24 IRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK--EGRTGASKGGRRP 73


>gi|152980076|ref|YP_001354579.1| heat-inducible transcription repressor [Janthinobacterium sp.
          Marseille]
 gi|151280153|gb|ABR88563.1| heat-inducible transcriptional repressor [Janthinobacterium sp.
          Marseille]
          Length = 342

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVET 56
          M L  R    ++ L+   I +  P    ++++     +S   +  I+  L + G V +
Sbjct: 1  MQLDNRAQTLLKALVERYIADGQPVGSRELSKISGLDLSPATIRNIMADLEEMGFVAS 58


>gi|78061330|ref|YP_371238.1| IclR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969215|gb|ABB10594.1| transcriptional regulator, IclR family [Burkholderia sp. 383]
          Length = 259

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
            R+L + A        +S IA    ++ + + ++L  L  A ++E      G  RL   
Sbjct: 22 AFRLLRFIA-EGGSTANLSDIARQIDVNRVTVKRLLDSLEAAELIEPHP-SGGSYRLGMS 79


>gi|23499939|ref|NP_699379.1| GntR family transcriptional regulator [Brucella suis 1330]
 gi|62317124|ref|YP_222977.1| GntR family transcriptional regulator [Brucella abortus bv. 1
          str. 9-941]
 gi|83269111|ref|YP_418402.1| GntR family regulatory protein [Brucella melitensis biovar
          Abortus 2308]
 gi|161620257|ref|YP_001594143.1| GntR domain-containing protein [Brucella canis ATCC 23365]
 gi|163844366|ref|YP_001622021.1| hypothetical protein BSUIS_B0180 [Brucella suis ATCC 23445]
 gi|189022387|ref|YP_001932128.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 gi|225628645|ref|ZP_03786679.1| GntR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237816687|ref|ZP_04595679.1| GntR family transcriptional regulator [Brucella abortus str. 2308
          A]
 gi|254691389|ref|ZP_05154643.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 6
          str. 870]
 gi|254695311|ref|ZP_05157139.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 3
          str. Tulya]
 gi|254698407|ref|ZP_05160235.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 2
          str. 86/8/59]
 gi|254699473|ref|ZP_05161301.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 5
          str. 513]
 gi|254702596|ref|ZP_05164424.1| Bacterial regulatory protein, GntR family [Brucella suis bv. 3
          str. 686]
 gi|254712035|ref|ZP_05173846.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M644/93/1]
 gi|254715104|ref|ZP_05176915.1| Bacterial regulatory protein, GntR family [Brucella ceti
          M13/05/1]
 gi|254719915|ref|ZP_05181726.1| Bacterial regulatory protein, GntR family [Brucella sp. 83/13]
 gi|254731854|ref|ZP_05190432.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 4
          str. 292]
 gi|256014963|ref|YP_003104972.1| transcriptional regulator, GntR family [Brucella microti CCM
          4915]
 gi|256059588|ref|ZP_05449786.1| Bacterial regulatory protein, GntR family [Brucella neotomae
          5K33]
 gi|256256574|ref|ZP_05462110.1| Bacterial regulatory protein, GntR family [Brucella abortus bv. 9
          str. C68]
 gi|260544362|ref|ZP_05820183.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260568496|ref|ZP_05838965.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260757002|ref|ZP_05869350.1| GntR domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260759624|ref|ZP_05871972.1| GntR domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260762867|ref|ZP_05875199.1| GntR domain-containing protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260882813|ref|ZP_05894427.1| GntR domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261215681|ref|ZP_05929962.1| GntR domain-containing protein [Brucella abortus bv. 3 str.
          Tulya]
 gi|261216812|ref|ZP_05931093.1| GntR domain-containing protein [Brucella ceti M13/05/1]
 gi|261319679|ref|ZP_05958876.1| GntR domain-containing protein [Brucella ceti M644/93/1]
 gi|261323555|ref|ZP_05962752.1| GntR domain-containing protein [Brucella neotomae 5K33]
 gi|261749925|ref|ZP_05993634.1| GntR domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261753178|ref|ZP_05996887.1| GntR domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|265984922|ref|ZP_06097657.1| GntR domain-containing protein [Brucella sp. 83/13]
 gi|297249931|ref|ZP_06933632.1| GntR family transcriptional regulator [Brucella abortus bv. 5
          str. B3196]
 gi|306838502|ref|ZP_07471340.1| GntR domain-containing protein [Brucella sp. NF 2653]
 gi|23463517|gb|AAN33384.1| transcriptional regulator, GntR family [Brucella suis 1330]
 gi|62197317|gb|AAX75616.1| transcriptional regulator, GntR family [Brucella abortus bv. 1
          str. 9-941]
 gi|82939385|emb|CAJ12338.1| Bacterial regulatory protein, GntR family:Bacterial regulatory
          protein, DeoR family [Brucella melitensis biovar
          Abortus 2308]
 gi|161337068|gb|ABX63372.1| GntR domain protein [Brucella canis ATCC 23365]
 gi|163675089|gb|ABY39199.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020961|gb|ACD73682.1| Bacterial regulatory protein, GntR family [Brucella abortus S19]
 gi|225616491|gb|EEH13539.1| GntR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237787500|gb|EEP61716.1| GntR family transcriptional regulator [Brucella abortus str. 2308
          A]
 gi|255997623|gb|ACU49310.1| transcriptional regulator, GntR family [Brucella microti CCM
          4915]
 gi|260097633|gb|EEW81507.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260155161|gb|EEW90242.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669942|gb|EEX56882.1| GntR domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260673288|gb|EEX60109.1| GntR domain-containing protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260677110|gb|EEX63931.1| GntR domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260872341|gb|EEX79410.1| GntR domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|260917288|gb|EEX84149.1| GntR domain-containing protein [Brucella abortus bv. 3 str.
          Tulya]
 gi|260921901|gb|EEX88469.1| GntR domain-containing protein [Brucella ceti M13/05/1]
 gi|261292369|gb|EEX95865.1| GntR domain-containing protein [Brucella ceti M644/93/1]
 gi|261299535|gb|EEY03032.1| GntR domain-containing protein [Brucella neotomae 5K33]
 gi|261739678|gb|EEY27604.1| GntR domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261742931|gb|EEY30857.1| GntR domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|264663514|gb|EEZ33775.1| GntR domain-containing protein [Brucella sp. 83/13]
 gi|297173800|gb|EFH33164.1| GntR family transcriptional regulator [Brucella abortus bv. 5
          str. B3196]
 gi|306406369|gb|EFM62610.1| GntR domain-containing protein [Brucella sp. NF 2653]
          Length = 270

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|46908475|ref|YP_014864.1| GntR family transcriptional regulator [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47093356|ref|ZP_00231124.1| transcriptional regulator, GntR family [Listeria monocytogenes
          str. 4b H7858]
 gi|226224849|ref|YP_002758956.1| transcriptional regulator (GntR family) [Listeria monocytogenes
          Clip81459]
 gi|254825195|ref|ZP_05230196.1| transcriptional regulator [Listeria monocytogenes FSL J1-194]
 gi|254853364|ref|ZP_05242712.1| transcriptional regulator [Listeria monocytogenes FSL R2-503]
 gi|254931646|ref|ZP_05265005.1| transcriptional regulator [Listeria monocytogenes HPB2262]
 gi|254992051|ref|ZP_05274241.1| transcriptional regulator (GntR family) protein [Listeria
          monocytogenes FSL J2-064]
 gi|255520404|ref|ZP_05387641.1| transcriptional regulator (GntR family) protein [Listeria
          monocytogenes FSL J1-175]
 gi|300763949|ref|ZP_07073945.1| GntR family transcriptional regulator [Listeria monocytogenes FSL
          N1-017]
 gi|46881746|gb|AAT05041.1| transcriptional regulator, GntR family [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47018275|gb|EAL09040.1| transcriptional regulator, GntR family [Listeria monocytogenes
          str. 4b H7858]
 gi|225877311|emb|CAS06025.1| Putative transcriptional regulator (GntR family) [Listeria
          monocytogenes serotype 4b str. CLIP 80459]
 gi|258606729|gb|EEW19337.1| transcriptional regulator [Listeria monocytogenes FSL R2-503]
 gi|293583201|gb|EFF95233.1| transcriptional regulator [Listeria monocytogenes HPB2262]
 gi|293594440|gb|EFG02201.1| transcriptional regulator [Listeria monocytogenes FSL J1-194]
 gi|300515290|gb|EFK42341.1| GntR family transcriptional regulator [Listeria monocytogenes FSL
          N1-017]
 gi|328465822|gb|EGF37010.1| GntR family transcriptional regulator [Listeria monocytogenes
          1816]
          Length = 131

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|322387021|ref|ZP_08060634.1| adc operon repressor AdcR [Streptococcus infantis ATCC 700779]
 gi|321142165|gb|EFX37657.1| adc operon repressor AdcR [Streptococcus infantis ATCC 700779]
          Length = 146

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM     ++     S++A    +S+  + K ++ L+K G++ET +
Sbjct: 42 HILMLL---SEESLTNSELARRLNVSQAAVTKAIKSLIKEGMLETSK 85


>gi|313607316|gb|EFR83736.1| GntR family transcriptional regulator [Listeria monocytogenes FSL
          F2-208]
          Length = 131

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|311107780|ref|YP_003980633.1| ArsR family transcriptional regulator [Achromobacter xylosoxidans
          A8]
 gi|310762469|gb|ADP17918.1| bacterial regulatory protein, ArsR family protein 6
          [Achromobacter xylosoxidans A8]
          Length = 245

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRGRRGGVRLC 67
          R  M C + +      +++A A  I         Q L + G+VE  V+G+    RL 
Sbjct: 22 RARMLCVLLDGRARTATELAAAADIGASTASSHFQRLRERGLVEMAVQGKHRYYRLA 78


>gi|320108220|ref|YP_004183810.1| AraC family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319926741|gb|ADV83816.1| transcriptional regulator, AraC family [Terriglobus saanensis
           SP1PR4]
          Length = 357

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
           +   Y  + +D    +S++AE   +S   L K+ +
Sbjct: 96  KACAYLDLQSDRTVPLSKLAEHVGLSPFHLQKLFR 130


>gi|304406607|ref|ZP_07388263.1| transcriptional regulator, AraC family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344665|gb|EFM10503.1| transcriptional regulator, AraC family [Paenibacillus
           curdlanolyticus YK9]
          Length = 325

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
            L Y   +   P  + ++A+   IS   L +I         +E+  G     RL R
Sbjct: 216 ALQYMHANYASPLTLQEVADRIQISVRQLQRIFNKFG----IESFSGYLEDFRLQR 267


>gi|302523781|ref|ZP_07276123.1| predicted protein [Streptomyces sp. AA4]
 gi|302432676|gb|EFL04492.1| predicted protein [Streptomyces sp. AA4]
          Length = 479

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           ++A+A  +S   +   L  L   G+V + RG  
Sbjct: 55 RELADALGVSRTLIGAALDRLRADGLVASRRGAG 88


>gi|289640662|ref|ZP_06472834.1| transcriptional regulator, MarR family [Frankia symbiont of
          Datisca glomerata]
 gi|289509551|gb|EFD30478.1| transcriptional regulator, MarR family [Frankia symbiont of
          Datisca glomerata]
          Length = 163

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          VL+  +   +   R++++AEA  +S   L +++  L + G+VE
Sbjct: 46 VLVQLSEAPEGALRMNELAEAVLLSRSGLTRLVDRLEREGLVE 88


>gi|282855850|ref|ZP_06265151.1| transcriptional regulator, ArsR family [Pyramidobacter piscolens
           W5455]
 gi|282586318|gb|EFB91585.1| transcriptional regulator, ArsR family [Pyramidobacter piscolens
           W5455]
          Length = 122

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 27  ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
           +  +A    +SE  + + L+ L +AGIV   R    G  +   AD+ T+ D+ +      
Sbjct: 29  VRALARELELSEAAVSQHLKVLREAGIVIGQRR---GYFMHYDADRRTLQDLAREI-GDL 84

Query: 87  FVAE--CFASHKIDCPLVGSCG 106
              E  C  + +        C 
Sbjct: 85  GAVERTCPPNERSRQNAGARCR 106


>gi|290893591|ref|ZP_06556573.1| transcriptional regulator [Listeria monocytogenes FSL J2-071]
 gi|290556793|gb|EFD90325.1| transcriptional regulator [Listeria monocytogenes FSL J2-071]
          Length = 131

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|256397535|ref|YP_003119099.1| MarR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363761|gb|ACU77258.1| transcriptional regulator, MarR family [Catenulispora acidiphila
           DSM 44928]
          Length = 355

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPA 70
           R+L+        P   +++A    ++   + + L+ L+ AG+  T R R G   L  R  
Sbjct: 271 RMLLML----GEPVSTTELARQLGVTPGAVSQHLKVLLDAGL--TSRARHGRSVLYARSP 324


>gi|256826024|ref|YP_003149984.1| ArsR family transcriptional regulator [Kytococcus sedentarius DSM
          20547]
 gi|256689417|gb|ACV07219.1| transcriptional regulator, ArsR family [Kytococcus sedentarius
          DSM 20547]
          Length = 121

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          ++   A  +       +IAE   +S   + + L+ L +AG+V +VRG
Sbjct: 18 IVTRLAEQD---LAAGEIAEFFPVSRPGISRHLRVLREAGLV-SVRG 60


>gi|256379355|ref|YP_003103015.1| ArsR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923658|gb|ACU39169.1| transcriptional regulator, ArsR family [Actinosynnema mirum DSM
           43827]
          Length = 299

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +R L       + P  +S++A A  ++   + + L  L  AG+  + R
Sbjct: 238 LRAL-------ERPVSVSELAGALGVTAGAVSQHLGVLRAAGLAVSRR 278


>gi|169629690|ref|YP_001703339.1| ArsR family transcriptional regulator [Mycobacterium abscessus ATCC
           19977]
 gi|169241657|emb|CAM62685.1| Putative transcriptional regulator, ArsR family [Mycobacterium
           abscessus]
          Length = 106

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVRLCRPA 70
           R  +  ++ +  P   S++AEA  +S       L  L   G+V  +  GRR    L    
Sbjct: 22  RAAILLSLRS-RPGYPSELAEAVGVSRQITSNHLACLRGCGLVVGIAEGRRTRYELADE- 79

Query: 71  DQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
                  + +A ++   +          CP+   C
Sbjct: 80  ------RIGRALDDLVDLV--LTVDPSYCPVGEEC 106


>gi|167768748|ref|ZP_02440801.1| hypothetical protein ANACOL_00065 [Anaerotruncus colihominis DSM
          17241]
 gi|167668920|gb|EDS13050.1| hypothetical protein ANACOL_00065 [Anaerotruncus colihominis DSM
          17241]
          Length = 256

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
            ++      ++AE   +S   +   L  L + G+++ VRG  
Sbjct: 40 AQSERLPSEVELAERLSVSRTVIRDALSDLEREGLIDRVRGIG 82


>gi|57854761|ref|YP_187538.1| transcriptional regulator, putative [Staphylococcus epidermidis
          RP62A]
 gi|57635994|gb|AAW52783.1| transcriptional regulator, putative [Staphylococcus epidermidis
          RP62A]
          Length = 111

 Score = 33.4 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          +   + +       +IA+   IS   +++ ++ L +AGI + +  G+  G  L
Sbjct: 10 ILIQLQSKKIIPAKEIAQRFNISLRTVYRDIRTLEEAGIPIGSEAGK--GYFL 60


>gi|329896380|ref|ZP_08271479.1| transcriptional activator HlyU [gamma proteobacterium IMCC3088]
 gi|328921800|gb|EGG29171.1| transcriptional activator HlyU [gamma proteobacterium IMCC3088]
          Length = 110

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          LM      +    + +++    I +  L + L  +   G+VE+ R
Sbjct: 26 LMVLCQLKNGEASVGELSRMLNIKQSPLSQHLARMRHEGVVESRR 70


>gi|302389451|ref|YP_003825272.1| biotin/acetyl-CoA-carboxylase ligase [Thermosediminibacter oceani
          DSM 16646]
 gi|302200079|gb|ADL07649.1| biotin/acetyl-CoA-carboxylase ligase [Thermosediminibacter oceani
          DSM 16646]
          Length = 327

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
                   +I+    +S   ++K +  L + G  ++++     G  L +  D
Sbjct: 18 KKGQYVSGEEISARFGVSRTAIWKQVNHLRQVGYEIDSLPRV--GYCLKKSPD 68


>gi|302024233|ref|ZP_07249444.1| AraC family regulatory protein [Streptococcus suis 05HAS68]
          Length = 279

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQP 47
           H  +P ++S+IA+   +S  +L+KI + 
Sbjct: 185 HYAHPIKVSEIADFLALSRSYLYKIFKQ 212


>gi|298248866|ref|ZP_06972671.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
 gi|297551525|gb|EFH85391.1| transcriptional regulator, GntR family [Ktedonobacter racemifer
          DSM 44963]
          Length = 253

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
                   + E   +S   + K +Q L++ G+VE  RG+ 
Sbjct: 31 GSQLPTEDDLIEEFEVSRTTIRKTIQSLIQQGLVEIRRGKG 71


>gi|293607774|ref|ZP_06690105.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
 gi|292813912|gb|EFF73062.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
          43553]
          Length = 251

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
          +++    +S + + + L  L    +++T RGR GG
Sbjct: 44 ELSRLMGVSPVTVREALNTLRARQLIDTRRGRNGG 78


>gi|302868195|ref|YP_003836832.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
 gi|315505409|ref|YP_004084296.1| regulatory protein arsr [Micromonospora sp. L5]
 gi|302571054|gb|ADL47256.1| regulatory protein ArsR [Micromonospora aurantiaca ATCC 27029]
 gi|315412028|gb|ADU10145.1| regulatory protein ArsR [Micromonospora sp. L5]
          Length = 135

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPAD 71
          +L+        P  IS++ E   +S   + K ++ L  AG+V T + GR    RL     
Sbjct: 31 ILIRLGA---GPATISELTEPTGMSLTGMRKHVRALEDAGLVVTRKVGRSRQCRLSEAPL 87

Query: 72 Q 72
           
Sbjct: 88 D 88


>gi|253752255|ref|YP_003025396.1| AraC family transcriptional regulator [Streptococcus suis SC84]
 gi|253754081|ref|YP_003027222.1| AraC family transcriptional regulator [Streptococcus suis P1/7]
 gi|253756015|ref|YP_003029155.1| AraC family transcriptional regulator [Streptococcus suis BM407]
 gi|251816544|emb|CAZ52180.1| AraC family regulatory protein [Streptococcus suis SC84]
 gi|251818479|emb|CAZ56308.1| AraC family regulatory protein [Streptococcus suis BM407]
 gi|251820327|emb|CAR46862.1| AraC family regulatory protein [Streptococcus suis P1/7]
 gi|319758644|gb|ADV70586.1| AraC-type DNA-binding domain-containing protein [Streptococcus suis
           JS14]
          Length = 279

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQP 47
           H  +P ++S+IA+   +S  +L+KI + 
Sbjct: 185 HYAHPIKVSEIADFLALSRSYLYKIFKQ 212


>gi|239940476|ref|ZP_04692413.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239986957|ref|ZP_04707621.1| ArsR family transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 137

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 11  IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRP 69
           IRVL      ++  + +S++     +    L + L  L +AG+V   R G      L  P
Sbjct: 36  IRVLELL---SERDHAVSEMLNEVGVEAAHLSQQLAVLRRAGLVTARREGSAVHYTLADP 92

Query: 70  ADQITILDVVKA 81
                + ++++ 
Sbjct: 93  G----VAELLRV 100


>gi|217969707|ref|YP_002354941.1| Crp/Fnr family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507034|gb|ACK54045.1| transcriptional regulator, Crp/Fnr family [Thauera sp. MZ1T]
          Length = 227

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           P     IA    ++   L +I   L  AG++ TV+G+R
Sbjct: 177 PTSKQVIASRLNLTPETLSRIFHDLSDAGLI-TVQGKR 213


>gi|254474385|ref|ZP_05087771.1| ROK domain protein [Ruegeria sp. R11]
 gi|214028628|gb|EEB69463.1| ROK domain protein [Ruegeria sp. R11]
          Length = 400

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 23/96 (23%)

Query: 10  GIRV----LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV---ETVRGRRG 62
           G+RV    L+   +  + P   S +A    +S   +  IL+ L   G++   E  RGR G
Sbjct: 17  GVRVFNERLILSLLQRNGPMPGSALARGTGLSSQTVSVILRKLETDGLLKRGEAQRGRVG 76

Query: 63  ----------------GVRLCRPADQITILDVVKAT 82
                           G+++ R + ++ +LDV  A 
Sbjct: 77  KPSVPMGLNPDGLFSYGLKIGRRSAEVLLLDVCGAV 112


>gi|148266356|ref|YP_001233062.1| regulatory protein, IclR [Geobacter uraniireducens Rf4]
 gi|146399856|gb|ABQ28489.1| transcriptional regulator, IclR family [Geobacter uraniireducens
          Rf4]
          Length = 263

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 1  MHLTKRTDYGIRVLMYCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
          M + ++T+Y IR + + A+        +D    +S ++    + +  +F++L  L     
Sbjct: 1  MKMNRKTNYIIRSVCH-ALDVLEQFHGDDAELGVSDLSRRLQLPKNNVFRLLATLEHRNY 59

Query: 54 VETVR 58
          VE  R
Sbjct: 60 VEQNR 64


>gi|146321416|ref|YP_001201127.1| AraC-type DNA-binding domain-containing protein [Streptococcus suis
           98HAH33]
 gi|145692222|gb|ABP92727.1| AraC-type DNA-binding domain-containing protein [Streptococcus suis
           98HAH33]
          Length = 192

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQP 47
           H  +P ++S+IA+   +S  +L+KI + 
Sbjct: 98  HYAHPIKVSEIADFLALSRSYLYKIFKQ 125


>gi|146319214|ref|YP_001198926.1| AraC family transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145690020|gb|ABP90526.1| AraC-type DNA-binding domain-containing protein [Streptococcus suis
           05ZYH33]
 gi|292558846|gb|ADE31847.1| putative MSM operon regulatory protein [Streptococcus suis GZ1]
          Length = 331

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQP 47
           H  +P ++S+IA+   +S  +L+KI + 
Sbjct: 237 HYAHPIKVSEIADFLALSRSYLYKIFKQ 264


>gi|146309798|ref|YP_001174872.1| DNA-binding transcriptional repressor LldR [Enterobacter sp. 638]
 gi|145316674|gb|ABP58821.1| transcriptional regulator, GntR family [Enterobacter sp. 638]
          Length = 257

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 11 IRVLMY-CAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          +R L+    +          Q+A    +S   L + L  L   G++ + RG  
Sbjct: 16 VRALIEELQLEAGMKLPAERQLAAQLGVSRNSLREALATLTSEGVLLSRRGGG 68


>gi|114570107|ref|YP_756787.1| ArsR family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340569|gb|ABI65849.1| transcriptional regulator, ArsR family [Maricaulis maris MCS10]
          Length = 114

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
           A   +    ++++AE   IS   + K L+ L  AGI+   RG+R   R
Sbjct: 23 LARLAEADATVNELAEPFEISLPAISKHLRVLEAAGII--SRGKRAQFR 69


>gi|110668525|ref|YP_658336.1| transcription regulator [Haloquadratum walsbyi DSM 16790]
 gi|109626272|emb|CAJ52730.1| transcription regulator [Haloquadratum walsbyi DSM 16790]
          Length = 158

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R +++    +      S IAE    ++  + K +Q L  AGI++
Sbjct: 11 RAILHALQMDARNMSSSDIAERTGTADSTVRKRIQRLESAGIIK 54


>gi|9507354|ref|NP_040448.1| hypothetical protein pIJ101_p09 [Plasmid pIJ101]
 gi|125523|sp|P22405|KORA_STRLI RecName: Full=Protein korA
 gi|484012|gb|AAA88411.1| putative [Plasmid pIJ101]
          Length = 241

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
          H D    +  +A    IS     K+ + L   G+ E  +G
Sbjct: 27 HGDTLPSVRDLAAQYEISTATAQKVHRTLKAEGLAEAKQG 66


>gi|13477074|ref|NP_108645.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14027838|dbj|BAB54431.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 247

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 19 IHNDYPNRISQ-IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
          ++        Q ++E   +S   + + +  L   G+VE  +G  G   L 
Sbjct: 31 LNPGSLLPTEQQLSEKFGVSRNVVREAIAQLRADGMVEARQGI-GSFVLA 79


>gi|16801406|ref|NP_471674.1| hypothetical protein lin2343 [Listeria innocua Clip11262]
 gi|16414866|emb|CAC97570.1| lin2343 [Listeria innocua Clip11262]
 gi|313617607|gb|EFR89915.1| GntR family transcriptional regulator [Listeria innocua FSL
          S4-378]
 gi|313622714|gb|EFR93066.1| GntR family transcriptional regulator [Listeria innocua FSL
          J1-023]
          Length = 129

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +    I + A    ++   + K  Q L +  ++ TV+G+ 
Sbjct: 30 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIVTVKGKG 72


>gi|157163804|ref|YP_001461122.1| GntR family transcriptional regulator [Escherichia coli HS]
 gi|157069484|gb|ABV08739.1| transcriptional regulator, GntR family [Escherichia coli HS]
          Length = 304

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          S +AE   IS   +  IL  L + G++  V        + R  D
Sbjct: 32 SALAEMYNISRTTVRHILSHLRECGVLTQV---GNDYVIARKPD 72


>gi|223933336|ref|ZP_03625324.1| transcriptional regulator, AraC family [Streptococcus suis 89/1591]
 gi|330833185|ref|YP_004402010.1| AraC family transcriptional regulator [Streptococcus suis ST3]
 gi|223897986|gb|EEF64359.1| transcriptional regulator, AraC family [Streptococcus suis 89/1591]
 gi|329307408|gb|AEB81824.1| transcriptional regulator, AraC family [Streptococcus suis ST3]
          Length = 279

 Score = 33.4 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQP 47
           H  +P ++S+IA+   +S  +L+KI + 
Sbjct: 185 HYAHPIKVSEIADFLALSRSYLYKIFKQ 212


>gi|330941640|gb|EGH44419.1| transcriptional regulator GntR [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 204

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R+L+   +        + +AE+  IS   L +  + L + G++        GV + +  D
Sbjct: 22 RMLVEGELVPGQRLSEAALAESLDISRNTLREAFRVLTREGLLTHE--PNRGVTVAK-PD 78

Query: 72 QITILDVVKA 81
            +I+D+ + 
Sbjct: 79 MASIIDIYRI 88


>gi|323359947|ref|YP_004226343.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323276318|dbj|BAJ76463.1| transcriptional regulator containing a DNA-binding HTH domain and
          an aminotransferase domain [Microbacterium testaceum
          StLB037]
          Length = 445

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
           +  +A    ++   +    + L +AG+VE  RGR G     R AD+ T+  
Sbjct: 34 SVRAVAAELGVNRNTVVAAYRQLAQAGLVEA-RGRGG----TRVADRTTVAQ 80


>gi|312965107|ref|ZP_07779344.1| protein mlc [Escherichia coli 2362-75]
 gi|312290198|gb|EFR18081.1| protein mlc [Escherichia coli 2362-75]
          Length = 406

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 23  YPNRISQIAEACCISELFLFKILQPLVKAGIVE------TVRGRRG-------------G 63
            P    QIAE   ++   + KI + L++ G+++      +  GRR              G
Sbjct: 31  GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90

Query: 64  VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
           VRL R    IT+ D+              +      P      L   L   LNA    + 
Sbjct: 91  VRLGRHDATITLFDLSSKV---------LSEEHYPLPERTQQTLEHAL---LNAIAQFID 138

Query: 124 QY--SIECLVR 132
            Y   +  L+ 
Sbjct: 139 SYQRKLRELIA 149


>gi|306840993|ref|ZP_07473733.1| GntR domain-containing protein [Brucella sp. BO2]
 gi|306289000|gb|EFM60268.1| GntR domain-containing protein [Brucella sp. BO2]
          Length = 270

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 34 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 74


>gi|284043777|ref|YP_003394117.1| ArsR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947998|gb|ADB50742.1| transcriptional regulator, ArsR family [Conexibacter woesei DSM
          14684]
          Length = 115

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            +  D P  +S IAE   ++   + + L+ L +AG+V   R
Sbjct: 26 LGLLLDGPQTVSAIAERYEMARPSVSEHLRVLREAGLVTETR 67


>gi|284042780|ref|YP_003393120.1| GntR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947001|gb|ADB49745.1| GntR domain protein [Conexibacter woesei DSM 14684]
          Length = 202

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             D      ++A    +S   L + L+ L   GI+E+ +G  
Sbjct: 21 APGDRLPPERELAARLGVSRSSLREGLRRLSDLGIIESRQGSG 63


>gi|266625284|ref|ZP_06118219.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
 gi|288862815|gb|EFC95113.1| transcriptional regulator, GntR family [Clostridium hathewayi DSM
          13479]
          Length = 251

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
          M + +R +Y            D+      + +   IS + + + +  L +AG ++  RG 
Sbjct: 21 MQI-ERGEY---------NRGDFLPTEKMLMDQYEISRVTVRQAMAALSQAGYIKCSRGI 70

Query: 61 R 61
           
Sbjct: 71 G 71


>gi|261407033|ref|YP_003243274.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261283496|gb|ACX65467.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10]
          Length = 104

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 13  VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLC--RP 69
           ++M  A +      ++ IA    +S   +   L+ L ++G +++  +G      L   +P
Sbjct: 30  IIMVLAQNKSG-LNVNAIAGHINLSRPAVSHHLKVLKQSGYIQSEKKGVENYYILTVRKP 88

Query: 70  ADQITILDVVKATE 83
            +Q  +  ++ A E
Sbjct: 89  LEQ--LKTLINAIE 100


>gi|146342205|ref|YP_001207253.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195011|emb|CAL79036.1| putative transcriptional regulator, GntR family, with an UbiC
          transcription regulator-associated domain
          [Bradyrhizobium sp. ORS278]
          Length = 241

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
          ++IAE+  ++   + + L  L + G+V   RG  
Sbjct: 39 TEIAESYRVNRHTVRRALATLAERGLVRAERGSG 72


>gi|145296277|ref|YP_001139098.1| hypothetical protein cgR_2194 [Corynebacterium glutamicum R]
 gi|140846197|dbj|BAF55196.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 251

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D     +++      S   + + +  L   G++ + RGRR
Sbjct: 28 GDSIPSEAELCRRFNTSRGPVRQAIATLRAEGLLSSSRGRR 68


>gi|27378198|ref|NP_769727.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27351345|dbj|BAC48352.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
          110]
          Length = 120

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 3  LTKRTDY-GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
          L++ T     R L+    H         +A    +    L   L  L +A +V + R
Sbjct: 13 LSQSTRLEAFRTLV---KHEPDGLAAGDLARQLEVPPNTLSAHLSILTRARLVTSER 66


>gi|83855056|ref|ZP_00948586.1| transcriptional regulator, ArsR family protein [Sulfitobacter sp.
          NAS-14.1]
 gi|83842899|gb|EAP82066.1| transcriptional regulator, ArsR family protein [Sulfitobacter sp.
          NAS-14.1]
          Length = 126

 Score = 33.4 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60
          R ++   + +D       +A+   IS   + K L  L +AG+ V+  RGR
Sbjct: 22 RAILAMLLEDDMAVT--DVADPFGISLAAISKHLSVLERAGLIVQEKRGR 69


>gi|332366173|gb|EGJ43929.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK1059]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|326410357|gb|ADZ67421.1| GntR domain-containing protein [Brucella melitensis M28]
 gi|326553650|gb|ADZ88289.1| GntR domain-containing protein [Brucella melitensis M5-90]
          Length = 253

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           D      ++A    IS   L   L+ L  AG++ +  G  
Sbjct: 17 GDRLPGERELARQFDISRPILRDALKRLETAGLLTSRHGGG 57


>gi|298246699|ref|ZP_06970504.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
 gi|297549358|gb|EFH83224.1| Helix-turn-helix type 11 domain protein [Ktedonobacter racemifer
          DSM 44963]
          Length = 316

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 12 RVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
          RVL    +         +++A    +    +   ++ LV  GI VE  RGR G  RL
Sbjct: 8  RVLTVLELLQAHGRMTGAELARRLEVDVRTVRNYIETLVDLGIPVEAERGRYGAYRL 64


>gi|289760956|ref|ZP_06520334.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          GM 1503]
 gi|289708462|gb|EFD72478.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          GM 1503]
          Length = 140

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               D    ++++AE        + + L  L  A +V T R
Sbjct: 36 LWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRR 77


>gi|284998413|ref|YP_003420181.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5]
 gi|284446309|gb|ADB87811.1| regulatory protein, MarR [Sulfolobus islandicus L.D.8.5]
          Length = 86

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R L+     N  P  IS++ +   IS   + KI+  L + G+VE
Sbjct: 9  RALLELLKENGLP--ISELQKRSKISGSVISKIVDSLKEKGLVE 50


>gi|284045426|ref|YP_003395766.1| IclR family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949647|gb|ADB52391.1| transcriptional regulator, IclR family [Conexibacter woesei DSM
          14684]
          Length = 266

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
          L+ C    D    + Q+     +    + ++LQ L + GIVE+
Sbjct: 23 LIQCIAQTDDAVSVGQLTAQMDLPSSTVHRLLQLLKRDGIVES 65


>gi|295680753|ref|YP_003609327.1| IclR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440648|gb|ADG19816.1| transcriptional regulator, IclR family [Burkholderia sp.
          CCGE1002]
          Length = 261

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          G+RVL + A   +    ++ IA+A  +      ++L  L++ G V 
Sbjct: 6  GLRVLDFLASQPEGAGLLA-IADALSLPRSTCHRLLAELIEGGYVR 50


>gi|270293147|ref|ZP_06199358.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. M143]
 gi|270279126|gb|EFA24972.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sp. M143]
          Length = 262

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPADQITILDVV 79
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G         ++ I D+ 
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL------KVLISDIF 254

Query: 80  KAT 82
           +  
Sbjct: 255 EEV 257


>gi|253583801|ref|ZP_04860999.1| transcription regulator [Fusobacterium varium ATCC 27725]
 gi|251834373|gb|EES62936.1| transcription regulator [Fusobacterium varium ATCC 27725]
          Length = 466

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           I QI      +   + K+ + L + G + + +G+ 
Sbjct: 36 SIRQIGIKYNTNINTVLKVFKMLERDGYIFSEKGKG 71


>gi|241766019|ref|ZP_04763939.1| regulatory protein GntR HTH [Acidovorax delafieldii 2AN]
 gi|241363991|gb|EER59254.1| regulatory protein GntR HTH [Acidovorax delafieldii 2AN]
          Length = 242

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 32  EACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------ADQI-TILDVVKAT 82
           E   +S   + + +  L  AG+VET  G  G   L +          DQ+ T+ +V+   
Sbjct: 45  ETFGVSRTVVREAISRLQAAGLVETRHGI-GTFVLAQDSGPSFRISPDQLGTLREVIAVL 103

Query: 83  EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           E    V     +  +         L   +R AL AF   + +
Sbjct: 104 EFRISVET--EAAALAAVRRNDDNLRE-MRDALGAFTAAMEE 142


>gi|315498707|ref|YP_004087511.1| transcriptional regulator, gntr family [Asticcacaulis excentricus
          CB 48]
 gi|315416719|gb|ADU13360.1| transcriptional regulator, GntR family [Asticcacaulis excentricus
          CB 48]
          Length = 245

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           IR  ++ A  +D       +AEA  +S + + K +  LV  G++   RG  
Sbjct: 29 AIRARVFVA--DDAIPPERDLAEAFDVSRITVRKAIDGLVTEGLLSRRRGAG 78


>gi|228994579|ref|ZP_04154410.1| Transcriptional regulator, DeoR [Bacillus pseudomycoides DSM
          12442]
 gi|228765149|gb|EEM13872.1| Transcriptional regulator, DeoR [Bacillus pseudomycoides DSM
          12442]
          Length = 251

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRL 66
              ++AE   IS   +++ +  L  +G+ + +  G  GG RL
Sbjct: 1  MTAKELAEELEISIRTVYRYIDALCASGVPIISDAGHNGGYRL 43


>gi|228476441|ref|ZP_04061131.1| zinc transport transcriptional repressor [Streptococcus salivarius
           SK126]
 gi|228251862|gb|EEK10908.1| zinc transport transcriptional repressor [Streptococcus salivarius
           SK126]
          Length = 147

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG----VRLC 67
            +LM     ++     S++A+   +S+  + K ++ LVK G++E  + +  G      L 
Sbjct: 42  HILMLL---SEGRKTNSELAKTLNVSQAAVTKAVKTLVKEGMLEAKKDKDDGRVTYFVLT 98

Query: 68  RPADQI 73
           + A  I
Sbjct: 99  QEAKPI 104


>gi|227830941|ref|YP_002832721.1| regulatory protein MarR [Sulfolobus islandicus L.S.2.15]
 gi|227457389|gb|ACP36076.1| regulatory protein MarR [Sulfolobus islandicus L.S.2.15]
          Length = 90

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
          R L+     N  P  IS++ +   IS   + KI+  L + G+VE
Sbjct: 9  RALLELLKENGLP--ISELQKRSKISGSVISKIVDSLKEKGLVE 50


>gi|289811389|ref|ZP_06542018.1| DNA-binding transcriptional repressor UxuR [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 91

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
             +      +IAE   ++   + + L  L   G+VE  RG  
Sbjct: 12 RPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAG 54


>gi|209696227|ref|YP_002264157.1| putative glucitol operon repressor [Aliivibrio salmonicida
          LFI1238]
 gi|208010180|emb|CAQ80507.1| putative glucitol operon repressor [Aliivibrio salmonicida
          LFI1238]
          Length = 254

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
           +++   I       + +++E   ISE+ + K L  L K G++     + GG  L
Sbjct: 11 HMILSLLIEKGE-ITVEELSELFDISEVTIRKDLTELEKNGLLM---RKYGGAVL 61


>gi|188584599|ref|YP_001928044.1| Crp/Fnr family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179348097|gb|ACB83509.1| transcriptional regulator, Crp/Fnr family [Methylobacterium populi
           BJ001]
          Length = 298

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 24  PNRISQIAEACCISELFLFKILQPLVKAGIVE 55
           P   + +A+   +S + + ++LQ L + G++E
Sbjct: 225 PITQADLADTLGMSCVHINRVLQKLRRDGLIE 256


>gi|94970484|ref|YP_592532.1| MarR family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94552534|gb|ABF42458.1| transcriptional regulator, MarR family with acetyltransferase
          activity [Candidatus Koribacter versatilis Ellin345]
          Length = 310

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          +RVL   A  +      SQIAE   +   ++ +++Q L    ++
Sbjct: 40 LRVLYEVAHEDG--ITASQIAERLGMDPGYVSRLVQELKARQLL 81


>gi|76786992|ref|YP_330289.1| transcriptional repressor CodY [Streptococcus agalactiae A909]
 gi|123601356|sp|Q3JZL4|CODY_STRA1 RecName: Full=GTP-sensing transcriptional pleiotropic repressor
           CodY
 gi|76562049|gb|ABA44633.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus agalactiae A909]
          Length = 261

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 22  DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           +     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 202 EGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|15607967|ref|NP_215342.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|31792015|ref|NP_854508.1| transcriptional regulatory protein [Mycobacterium bovis
          AF2122/97]
 gi|121636751|ref|YP_976974.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148660605|ref|YP_001282128.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra]
 gi|148822033|ref|YP_001286787.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167967515|ref|ZP_02549792.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|215410397|ref|ZP_03419205.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215410406|ref|ZP_03419214.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215426088|ref|ZP_03424007.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215429678|ref|ZP_03427597.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|215444964|ref|ZP_03431716.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|219556686|ref|ZP_03535762.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224989222|ref|YP_002643909.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253797774|ref|YP_003030775.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254363764|ref|ZP_04979810.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254549799|ref|ZP_05140246.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260185720|ref|ZP_05763194.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260199842|ref|ZP_05767333.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260204017|ref|ZP_05771508.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289442230|ref|ZP_06431974.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289446391|ref|ZP_06436135.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289553084|ref|ZP_06442294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289568780|ref|ZP_06449007.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289573445|ref|ZP_06453672.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289749343|ref|ZP_06508721.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289752876|ref|ZP_06512254.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289756914|ref|ZP_06516292.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|294996307|ref|ZP_06801998.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297633339|ref|ZP_06951119.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297730323|ref|ZP_06959441.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298524322|ref|ZP_07011731.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|306774950|ref|ZP_07413287.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306782138|ref|ZP_07420475.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306783493|ref|ZP_07421815.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787857|ref|ZP_07426179.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306794852|ref|ZP_07433154.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306796596|ref|ZP_07434898.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306802454|ref|ZP_07439122.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306806663|ref|ZP_07443331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306966862|ref|ZP_07479523.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306971053|ref|ZP_07483714.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307078785|ref|ZP_07487955.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307083346|ref|ZP_07492459.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657648|ref|ZP_07814528.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|2916885|emb|CAA17633.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|31617602|emb|CAD93712.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121492398|emb|CAL70866.1| Probable transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|134149278|gb|EBA41323.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148504757|gb|ABQ72566.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148720560|gb|ABR05185.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224772335|dbj|BAH25141.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253319277|gb|ACT23880.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289415149|gb|EFD12389.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289419349|gb|EFD16550.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289437716|gb|EFD20209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289537876|gb|EFD42454.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289542534|gb|EFD46182.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289689930|gb|EFD57359.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289693463|gb|EFD60892.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289712478|gb|EFD76490.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|298494116|gb|EFI29410.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|308216504|gb|EFO75903.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308325159|gb|EFP14010.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308331714|gb|EFP20565.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308335512|gb|EFP24363.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308336857|gb|EFP25708.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308342989|gb|EFP31840.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308346872|gb|EFP35723.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308350813|gb|EFP39664.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308355446|gb|EFP44297.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308359402|gb|EFP48253.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308363307|gb|EFP52158.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308366958|gb|EFP55809.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|326904954|gb|EGE51887.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328457553|gb|AEB02976.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 130

 Score = 33.4 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
               D    ++++AE        + + L  L  A +V T R
Sbjct: 34 LWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRR 75


>gi|332561020|ref|ZP_08415338.1| phage late control D family protein [Rhodobacter sphaeroides
          WS8N]
 gi|332274818|gb|EGJ20134.1| phage late control D family protein [Rhodobacter sphaeroides
          WS8N]
          Length = 37

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 40 FLFKILQPLVKAGIVETVRGRRG 62
           L  +   L + G+V + RGR+G
Sbjct: 13 HLESVSHQLDQGGLVTSFRGRKG 35


>gi|325688125|gb|EGD30144.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK72]
 gi|327469124|gb|EGF14596.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK330]
 gi|327473505|gb|EGF18925.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK408]
 gi|332363917|gb|EGJ41696.1| GTP-sensing transcriptional pleiotropic repressor CodY
           [Streptococcus sanguinis SK355]
          Length = 262

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 21  NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVR 65
           N+     S IA+   I+   +   L+ L  AGI+E+   G +G   
Sbjct: 201 NEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGMKGTYL 246


>gi|323917989|gb|ADY11210.1| IclR-type transcriptional regulator [Burkholderia cepacia]
          Length = 278

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          G+ VL   A   D P    ++ E   I +  + +I   LV AG +
Sbjct: 30 GLTVLRRVAA-ADAPLSNRELTELTGIPKPTVSRITATLVSAGFL 73


>gi|315444087|ref|YP_004076966.1| IclR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315262390|gb|ADT99131.1| transcriptional regulator, IclR family [Mycobacterium sp. Spyr1]
          Length = 253

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
          LM           +++++    +    + ++L+ LV  G V  +  RR    L      I
Sbjct: 17 LMELIGRAGGECSLTELSAESPLPPPTIHRLLRTLVGLGYVRQLPNRR--YALG--PRLI 72

Query: 74 TILDV 78
           + +V
Sbjct: 73 RLGEV 77


>gi|313835277|gb|EFS72991.1| FCD domain protein [Propionibacterium acnes HL037PA2]
 gi|314928227|gb|EFS92058.1| FCD domain protein [Propionibacterium acnes HL044PA1]
 gi|314970056|gb|EFT14154.1| FCD domain protein [Propionibacterium acnes HL037PA3]
          Length = 274

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 19  IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL-CRPADQITILD 77
           ++        ++A +  +S   + + ++ L   GI+ +  GR  G R+  RP+D I    
Sbjct: 67  VNGSRLPPERELATSLGVSRGAVREAIRALEAQGILSSGTGRGNGTRVDARPSDAI--GR 124

Query: 78  VVK 80
           +++
Sbjct: 125 ILR 127


>gi|308071174|ref|YP_003872779.1| cAMP-binding protein [Paenibacillus polymyxa E681]
 gi|305860453|gb|ADM72241.1| cAMP-binding protein [Paenibacillus polymyxa E681]
          Length = 234

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 18  AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG------RRGGVRLC 67
           A H +   + +  +A     S   L ++++ +++ G VE  +G      R+G   L 
Sbjct: 170 AFHEELRASSLVDVANLIGTSYRHLNRVIRKMIEDGWVERTKGYIVIRDRKGLSELA 226


>gi|302334922|ref|YP_003800129.1| transcriptional regulator, GntR family [Olsenella uli DSM 7084]
 gi|301318762|gb|ADK67249.1| transcriptional regulator, GntR family [Olsenella uli DSM 7084]
          Length = 119

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 18/36 (50%)

Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           + +++    ++   + +  + L + G + +VRG+ 
Sbjct: 37 SVRELSSRLAVNPNTIQRAYRELEQEGCISSVRGKG 72


>gi|297155570|gb|ADI05282.1| transcriptional regulator, AsnC family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 269

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
          R L++ A+  D    +  + EA  +SE    +  + L  AG++  V    GG RL   A 
Sbjct: 13 RGLVH-ALQIDGRAPLRTLGEALGVSENTAARRYRRLRSAGVLRVVGALNGG-RLGYNAW 70

Query: 72 QITI 75
           I +
Sbjct: 71 TIRL 74


>gi|297571083|ref|YP_003696857.1| ArsR family transcriptional regulator [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296931430|gb|ADH92238.1| transcriptional regulator, ArsR family [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 99

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
            + +  P  +S +AE   +S+  + + L+ L   G+V   R
Sbjct: 26 LVLLDKEPLGVSALAELANMSQPLVSQHLRTLRAVGLVTATR 67


>gi|296131762|ref|YP_003639009.1| biotin/acetyl-CoA-carboxylase ligase [Thermincola sp. JR]
 gi|296030340|gb|ADG81108.1| biotin/acetyl-CoA-carboxylase ligase [Thermincola potens JR]
          Length = 324

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD-----QITIL 76
              +I+    +S   ++K +Q L + G     R + G  RL    D     +IT+ 
Sbjct: 17 LSGEEISSRLQVSRTAVWKHIQALREDGYTIESRSKVG-YRLVTVPDRLYPGEITVG 72


>gi|260777444|ref|ZP_05886338.1| transcriptional regulator AsnC family [Vibrio coralliilyticus
          ATCC BAA-450]
 gi|260607110|gb|EEX33384.1| transcriptional regulator AsnC family [Vibrio coralliilyticus
          ATCC BAA-450]
          Length = 151

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
           +LM      D     + IA+   +S     + ++ L + G++ + R
Sbjct: 7  HILMLL--QKDARQSTADIADKVGLSPSPCARRIKRLEEEGVIASYR 51


>gi|242240698|ref|YP_002988879.1| GntR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132755|gb|ACS87057.1| transcriptional regulator, GntR family [Dickeya dadantii Ech703]
          Length = 232

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 20  HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRPADQITILD 77
           H       + ++E+  IS   L ++ + L + G++  E  RG           D  +I+D
Sbjct: 42  HPGQRLSEAALSESLAISRNTLREVFRLLTQEGLLRYEPNRGV-----FVATPDMSSIID 96

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
           + +       + EC A  K          + + + +A  
Sbjct: 97  IYRV----RRIIECQALAKAYPMHPAVKTMRAAIERARQ 131


>gi|253990852|ref|YP_003042208.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211639187|emb|CAR67800.1| Transcriptional regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782302|emb|CAQ85466.1| Transcriptional regulator [Photorhabdus asymbiotica]
          Length = 223

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGVRLCRPA 70
            LM           + ++AE   ++     + LQ L +AG V++ R G+    RL    
Sbjct: 27 HRLMLLEHITQGERPVERLAELTGLTIANSSQHLQHLKRAGFVQSRREGKNVYYRLGNGP 86


>gi|261405135|ref|YP_003241376.1| Helix-turn-helix type 11 domain-containing protein [Paenibacillus
          sp. Y412MC10]
 gi|261281598|gb|ACX63569.1| Helix-turn-helix type 11 domain protein [Paenibacillus sp.
          Y412MC10]
          Length = 316

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 1  MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRG 59
          M + +     I VL+     N       ++A+   +S   +++ +  L +AGI +   +G
Sbjct: 1  MKIDRL--LAITVLLL----NRGRLSAKELADRFEVSSKTIYRDMDTLCQAGIPIVAHQG 54

Query: 60 RRGGV 64
            GG 
Sbjct: 55 ITGGF 59


>gi|206974884|ref|ZP_03235799.1| biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase
          [Bacillus cereus H3081.97]
 gi|206746903|gb|EDZ58295.1| biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase
          [Bacillus cereus H3081.97]
          Length = 326

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPADQITILDV 78
          +        I++    S   ++K ++ L   G  +E VR    G R+    D++T  ++
Sbjct: 17 DGEFVSGQTISDKLGCSRTAVWKHMEDLRNEGYELEAVRRL--GYRIASKPDKVTANEI 73


>gi|167746639|ref|ZP_02418766.1| hypothetical protein ANACAC_01350 [Anaerostipes caccae DSM 14662]
 gi|317471466|ref|ZP_07930818.1| gntR family bacterial regulatory protein [Anaerostipes sp.
          3_2_56FAA]
 gi|167653599|gb|EDR97728.1| hypothetical protein ANACAC_01350 [Anaerostipes caccae DSM 14662]
 gi|316901081|gb|EFV23043.1| gntR family bacterial regulatory protein [Anaerostipes sp.
          3_2_56FAA]
          Length = 229

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
           +      +I+E   +S   + + +  L   G + + +G  
Sbjct: 26 GEKLPPEREISEQLGVSRNSVREAIHMLEMMGFISSQQGAG 66


>gi|254361982|ref|ZP_04978113.1| FadR family transcriptional regulator [Mannheimia haemolytica
          PHL213]
 gi|261493701|ref|ZP_05990220.1| FadR family transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. BOVINE]
 gi|261494368|ref|ZP_05990862.1| FadR family transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|153093529|gb|EDN74509.1| FadR family transcriptional regulator [Mannheimia haemolytica
          PHL213]
 gi|261310017|gb|EEY11226.1| FadR family transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261310701|gb|EEY11885.1| FadR family transcriptional regulator [Mannheimia haemolytica
          serotype A2 str. BOVINE]
          Length = 241

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           ++AE   ++   L ++LQ L + G +    G+
Sbjct: 39 RELAERIGVTRTTLREVLQRLAREGWLSIQHGK 71


>gi|150376985|ref|YP_001313581.1| transcriptional regulator IclR [Sinorhizobium medicae WSM419]
 gi|150031532|gb|ABR63648.1| Transcriptional regulator IclR [Sinorhizobium medicae WSM419]
          Length = 254

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
          L+     ++ P  ++ +AE   +    L ++ Q LV+ G +
Sbjct: 20 LIEVVGLSEKPVTLNDLAERIDMPRATLHRLCQRLVEEGFL 60


>gi|76801216|ref|YP_326224.1| hypothetical protein NP1128A [Natronomonas pharaonis DSM 2160]
 gi|76557081|emb|CAI48655.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 202

 Score = 33.4 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 12  RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
           R+L+     +D     S IA+A  +S   + K    L  AG+++    R  G    R  +
Sbjct: 117 RMLIEL--LSDPQISGSDIADALGVSRSTVSKYAAELEAAGLLD----REDGYT-VRQPE 169

Query: 72  QITILDVVK 80
            + +  VV+
Sbjct: 170 TL-VALVVR 177


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.189    0.613 

Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,670,605,203
Number of Sequences: 14124377
Number of extensions: 211429556
Number of successful extensions: 766345
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 9984
Number of HSP's successfully gapped in prelim test: 4594
Number of HSP's that attempted gapping in prelim test: 748820
Number of HSP's gapped (non-prelim): 14932
length of query: 144
length of database: 4,842,793,630
effective HSP length: 108
effective length of query: 36
effective length of database: 3,317,360,914
effective search space: 119424992904
effective search space used: 119424992904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.5 bits)
S2: 77 (33.8 bits)